Query 046582
Match_columns 381
No_of_seqs 200 out of 1395
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:37:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 5.9E-57 1.3E-61 423.1 36.7 361 20-381 8-369 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.9E-54 6.3E-59 405.8 35.4 352 18-381 7-368 (477)
3 PLN02670 transferase, transfer 100.0 3.4E-54 7.4E-59 402.6 34.0 349 19-381 5-364 (472)
4 PLN02992 coniferyl-alcohol glu 100.0 5.5E-54 1.2E-58 401.5 33.8 333 20-381 5-363 (481)
5 PLN03007 UDP-glucosyltransfera 100.0 5.3E-53 1.2E-57 400.6 37.3 359 19-381 4-370 (482)
6 PLN02208 glycosyltransferase f 100.0 1.8E-53 3.9E-58 396.8 32.7 330 20-381 4-336 (442)
7 PLN03015 UDP-glucosyl transfer 100.0 3.3E-53 7.1E-58 394.0 33.5 334 20-381 3-360 (470)
8 PLN02764 glycosyltransferase f 100.0 5.1E-53 1.1E-57 391.6 33.4 332 19-381 4-342 (453)
9 PLN03004 UDP-glycosyltransfera 100.0 7.8E-53 1.7E-57 391.8 33.4 342 20-381 3-359 (451)
10 PLN00414 glycosyltransferase f 100.0 7.5E-53 1.6E-57 393.0 33.0 332 19-381 3-337 (446)
11 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.1E-52 4.6E-57 390.5 34.1 336 14-381 1-349 (451)
12 PLN02555 limonoid glucosyltran 100.0 1.2E-51 2.7E-56 386.7 33.9 346 14-381 1-362 (480)
13 PLN00164 glucosyltransferase; 100.0 3.2E-51 7E-56 386.5 34.8 337 20-381 3-364 (480)
14 PLN02207 UDP-glycosyltransfera 100.0 3.6E-51 7.7E-56 381.9 34.5 340 19-381 2-357 (468)
15 PLN02173 UDP-glucosyl transfer 100.0 3.6E-51 7.8E-56 380.5 32.7 326 18-381 3-342 (449)
16 PLN02152 indole-3-acetate beta 100.0 3.9E-51 8.6E-56 380.9 32.8 334 20-381 3-352 (455)
17 PLN02562 UDP-glycosyltransfera 100.0 2.5E-50 5.5E-55 377.7 34.3 330 20-381 6-353 (448)
18 PLN02167 UDP-glycosyltransfera 100.0 9.9E-50 2.1E-54 377.2 33.9 347 19-381 2-365 (475)
19 PLN02554 UDP-glycosyltransfera 100.0 2.7E-49 5.9E-54 374.8 33.7 340 20-381 2-367 (481)
20 PLN02210 UDP-glucosyl transfer 100.0 8.6E-49 1.9E-53 367.7 33.4 331 19-381 7-349 (456)
21 PLN02448 UDP-glycosyltransfera 100.0 1.1E-46 2.3E-51 355.8 33.5 331 18-381 8-348 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 5.8E-37 1.3E-41 291.5 18.0 307 21-381 21-371 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.5E-38 3.3E-43 307.2 -2.6 302 22-381 2-348 (500)
24 KOG1192 UDP-glucuronosyl and U 100.0 4.6E-33 9.9E-38 269.1 6.9 320 20-381 5-361 (496)
25 TIGR01426 MGT glycosyltransfer 99.9 1.8E-23 4E-28 196.0 22.5 285 27-381 2-298 (392)
26 cd03784 GT1_Gtf_like This fami 99.9 2.5E-22 5.4E-27 189.1 22.5 298 21-381 1-311 (401)
27 COG1819 Glycosyl transferases, 99.7 2.5E-16 5.4E-21 146.5 14.5 123 21-160 2-124 (406)
28 PF03033 Glyco_transf_28: Glyc 99.2 5.8E-12 1.3E-16 100.2 4.0 120 23-163 1-132 (139)
29 TIGR00661 MJ1255 conserved hyp 98.7 1E-06 2.2E-11 80.4 17.6 115 23-160 2-121 (321)
30 PF13528 Glyco_trans_1_3: Glyc 98.3 7.5E-06 1.6E-10 74.6 11.8 119 22-162 2-124 (318)
31 PRK12446 undecaprenyldiphospho 98.0 9E-05 2E-09 68.3 12.5 115 22-159 3-121 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.5 0.0021 4.5E-08 59.0 12.5 115 22-160 2-122 (357)
33 cd03785 GT1_MurG MurG is an N- 97.4 0.0029 6.3E-08 58.3 12.9 116 22-158 1-118 (350)
34 PRK00726 murG undecaprenyldiph 97.3 0.0049 1.1E-07 57.1 13.1 117 21-158 2-120 (357)
35 TIGR01133 murG undecaprenyldip 97.3 0.0054 1.2E-07 56.5 13.0 116 22-158 2-119 (348)
36 TIGR00215 lpxB lipid-A-disacch 97.0 0.0051 1.1E-07 57.6 9.9 112 21-159 6-120 (385)
37 PLN02871 UDP-sulfoquinovose:DA 97.0 0.38 8.2E-06 46.4 22.9 41 18-58 56-101 (465)
38 PF04007 DUF354: Protein of un 96.4 0.051 1.1E-06 49.5 11.6 104 32-163 11-114 (335)
39 cd03816 GT1_ALG1_like This fam 96.4 0.089 1.9E-06 49.9 13.9 121 20-159 3-128 (415)
40 PF13477 Glyco_trans_4_2: Glyc 96.3 0.05 1.1E-06 42.6 9.9 100 23-158 2-105 (139)
41 cd03818 GT1_ExpC_like This fam 96.2 0.16 3.4E-06 47.8 14.1 115 23-160 2-117 (396)
42 TIGR03590 PseG pseudaminic aci 96.0 0.099 2.2E-06 46.6 11.2 80 29-142 12-91 (279)
43 cd03794 GT1_wbuB_like This fam 95.9 1.4 3.1E-05 40.3 22.9 29 31-59 14-42 (394)
44 PRK00025 lpxB lipid-A-disaccha 95.7 0.095 2.1E-06 48.9 10.2 35 21-56 2-36 (380)
45 PF13579 Glyco_trans_4_4: Glyc 95.3 0.015 3.2E-07 46.4 2.9 98 35-160 5-104 (160)
46 cd03823 GT1_ExpE7_like This fa 95.2 0.25 5.4E-06 45.0 11.1 29 31-59 15-43 (359)
47 PRK10307 putative glycosyl tra 94.9 0.24 5.1E-06 46.9 10.4 23 36-58 20-42 (412)
48 cd03800 GT1_Sucrose_synthase T 94.9 0.17 3.8E-06 47.2 9.3 108 31-158 21-130 (398)
49 cd04962 GT1_like_5 This family 94.9 0.34 7.3E-06 44.8 11.2 37 22-58 2-39 (371)
50 PRK13609 diacylglycerol glucos 94.8 0.24 5.2E-06 46.3 10.0 37 21-57 5-42 (380)
51 TIGR02470 sucr_synth sucrose s 93.8 1.2 2.6E-05 45.4 12.7 113 31-158 279-414 (784)
52 cd03796 GT1_PIG-A_like This fa 93.6 0.42 9.1E-06 45.0 9.1 101 32-158 15-119 (398)
53 cd03802 GT1_AviGT4_like This f 93.4 1.2 2.7E-05 40.3 11.5 28 31-58 19-46 (335)
54 cd03808 GT1_cap1E_like This fa 93.3 0.65 1.4E-05 42.1 9.7 38 23-60 2-39 (359)
55 TIGR02468 sucrsPsyn_pln sucros 93.3 1.3 2.8E-05 46.5 12.2 120 32-161 196-342 (1050)
56 PF08660 Alg14: Oligosaccharid 93.3 1.9 4.1E-05 35.2 11.0 111 29-159 6-128 (170)
57 PF12000 Glyco_trans_4_3: Gkyc 93.1 1.5 3.3E-05 35.6 10.1 44 116-160 52-96 (171)
58 cd03817 GT1_UGDG_like This fam 93.0 0.61 1.3E-05 42.6 9.0 32 28-59 11-42 (374)
59 COG4671 Predicted glycosyl tra 92.9 0.53 1.2E-05 42.4 7.7 56 21-84 10-69 (400)
60 PLN00142 sucrose synthase 92.4 0.76 1.6E-05 46.8 9.1 38 123-160 400-439 (815)
61 cd03805 GT1_ALG2_like This fam 92.4 2.9 6.2E-05 39.0 12.7 37 22-58 2-40 (392)
62 TIGR03449 mycothiol_MshA UDP-N 92.2 1.6 3.5E-05 41.0 10.8 110 30-159 19-131 (405)
63 TIGR02472 sucr_P_syn_N sucrose 91.7 1.1 2.5E-05 42.7 9.2 112 32-158 27-143 (439)
64 cd03819 GT1_WavL_like This fam 91.6 1.9 4.1E-05 39.4 10.4 98 31-160 10-109 (355)
65 COG3980 spsG Spore coat polysa 90.9 2.2 4.7E-05 37.4 9.0 96 22-163 2-104 (318)
66 PLN02275 transferase, transfer 90.4 11 0.00023 35.1 14.2 57 21-83 5-62 (371)
67 cd03801 GT1_YqgM_like This fam 89.1 4.4 9.6E-05 36.6 10.6 29 31-59 14-42 (374)
68 cd01635 Glycosyltransferase_GT 88.9 4.1 8.9E-05 34.1 9.6 26 30-55 12-37 (229)
69 PRK02261 methylaspartate mutas 88.9 2.8 6E-05 32.8 7.6 45 19-63 2-46 (137)
70 COG1817 Uncharacterized protei 88.7 8.8 0.00019 34.3 11.1 103 31-162 10-114 (346)
71 cd03812 GT1_CapH_like This fam 88.5 6.1 0.00013 36.1 11.0 32 29-60 10-41 (358)
72 cd03820 GT1_amsD_like This fam 86.5 5.3 0.00011 35.8 9.3 29 31-59 13-41 (348)
73 COG1703 ArgK Putative periplas 86.4 5 0.00011 35.6 8.3 42 19-60 50-91 (323)
74 COG1519 KdtA 3-deoxy-D-manno-o 86.2 12 0.00027 34.8 11.1 100 22-160 50-154 (419)
75 cd04955 GT1_like_6 This family 85.3 5.7 0.00012 36.3 9.0 30 30-59 14-43 (363)
76 cd03798 GT1_wlbH_like This fam 84.2 31 0.00068 31.0 23.5 31 30-60 13-43 (377)
77 PRK13932 stationary phase surv 83.9 8.6 0.00019 33.6 8.7 40 20-61 5-44 (257)
78 cd03814 GT1_like_2 This family 83.0 1.8 4E-05 39.4 4.6 28 31-58 14-41 (364)
79 cd02067 B12-binding B12 bindin 83.0 5.4 0.00012 30.1 6.5 39 22-60 1-39 (119)
80 PF13439 Glyco_transf_4: Glyco 82.9 1.6 3.5E-05 35.1 3.8 29 31-59 12-40 (177)
81 cd03807 GT1_WbnK_like This fam 82.3 22 0.00048 32.0 11.6 31 29-59 10-40 (365)
82 PRK05749 3-deoxy-D-manno-octul 81.9 9.3 0.0002 36.2 9.1 99 22-159 51-154 (425)
83 PRK00654 glgA glycogen synthas 81.0 2.4 5.3E-05 40.8 4.7 28 30-57 16-43 (466)
84 COG0801 FolK 7,8-dihydro-6-hyd 80.9 3.4 7.4E-05 33.0 4.7 35 297-331 3-37 (160)
85 COG0496 SurE Predicted acid ph 80.9 6.6 0.00014 34.0 6.7 28 33-61 12-39 (252)
86 PLN02846 digalactosyldiacylgly 80.6 2.5 5.4E-05 40.5 4.6 40 19-58 3-47 (462)
87 cd03806 GT1_ALG11_like This fa 80.1 34 0.00074 32.4 12.2 117 32-162 15-139 (419)
88 PRK13608 diacylglycerol glucos 79.7 23 0.0005 33.2 10.8 33 22-54 7-43 (391)
89 PRK13933 stationary phase surv 78.6 18 0.0004 31.5 8.8 38 22-61 2-39 (253)
90 PRK01021 lpxB lipid-A-disaccha 78.5 26 0.00056 34.7 10.7 34 130-163 309-347 (608)
91 PF06722 DUF1205: Protein of u 78.5 3.4 7.3E-05 30.1 3.7 56 281-336 26-86 (97)
92 cd03825 GT1_wcfI_like This fam 78.0 3.4 7.4E-05 37.8 4.6 38 22-59 2-41 (365)
93 TIGR00715 precor6x_red precorr 76.2 16 0.00035 32.0 7.9 23 37-59 12-34 (256)
94 PRK00346 surE 5'(3')-nucleotid 76.1 11 0.00025 32.8 6.9 28 33-61 12-39 (250)
95 PRK10422 lipopolysaccharide co 76.1 26 0.00056 32.3 9.8 44 20-63 5-50 (352)
96 PRK13931 stationary phase surv 75.8 17 0.00038 31.8 8.0 27 35-61 14-43 (261)
97 TIGR00347 bioD dethiobiotin sy 75.8 39 0.00085 27.0 10.1 28 27-54 5-32 (166)
98 TIGR02095 glgA glycogen/starch 75.5 4.6 9.9E-05 39.0 4.9 28 31-58 17-44 (473)
99 TIGR00236 wecB UDP-N-acetylglu 75.4 38 0.00081 31.3 10.8 110 22-158 2-116 (365)
100 TIGR02201 heptsyl_trn_III lipo 74.6 37 0.00079 31.1 10.4 43 22-64 1-45 (344)
101 PF02310 B12-binding: B12 bind 74.1 21 0.00045 26.8 7.4 42 22-63 2-43 (121)
102 cd03821 GT1_Bme6_like This fam 74.1 4.8 0.0001 36.6 4.5 30 30-59 13-42 (375)
103 PRK13935 stationary phase surv 73.6 33 0.00072 30.0 9.1 38 22-61 2-39 (253)
104 cd03786 GT1_UDP-GlcNAc_2-Epime 73.5 47 0.001 30.5 11.0 32 27-58 5-37 (363)
105 PF02585 PIG-L: GlcNAc-PI de-N 73.1 29 0.00064 26.4 8.0 31 24-55 2-32 (128)
106 PRK08057 cobalt-precorrin-6x r 72.8 24 0.00052 30.8 8.1 40 119-160 55-100 (248)
107 cd02070 corrinoid_protein_B12- 72.5 19 0.00041 30.2 7.3 42 20-61 82-123 (201)
108 cd03791 GT1_Glycogen_synthase_ 72.1 5.5 0.00012 38.4 4.5 27 32-58 17-43 (476)
109 cd04951 GT1_WbdM_like This fam 71.3 5.1 0.00011 36.5 4.0 28 30-57 11-38 (360)
110 COG1066 Sms Predicted ATP-depe 71.2 45 0.00098 31.3 9.6 44 21-65 94-137 (456)
111 TIGR02370 pyl_corrinoid methyl 71.1 22 0.00047 29.8 7.3 47 19-65 83-129 (197)
112 PF02441 Flavoprotein: Flavopr 70.5 7 0.00015 30.1 4.0 41 22-63 2-42 (129)
113 cd01121 Sms Sms (bacterial rad 70.3 92 0.002 29.1 11.9 43 22-64 84-126 (372)
114 cd03792 GT1_Trehalose_phosphor 68.8 45 0.00097 30.8 9.7 30 29-58 10-39 (372)
115 COG0541 Ffh Signal recognition 68.7 61 0.0013 30.6 10.0 44 20-63 100-143 (451)
116 PRK12475 thiamine/molybdopteri 68.6 43 0.00094 30.7 9.2 31 20-55 24-55 (338)
117 COG3914 Spy Predicted O-linked 68.4 14 0.00031 35.8 6.1 43 293-335 427-469 (620)
118 PRK09922 UDP-D-galactose:(gluc 68.0 38 0.00082 31.2 9.0 37 22-58 2-43 (359)
119 PRK10916 ADP-heptose:LPS hepto 67.9 43 0.00093 30.8 9.3 43 22-64 2-46 (348)
120 PF01975 SurE: Survival protei 67.8 10 0.00022 31.8 4.5 39 22-61 2-40 (196)
121 cd05844 GT1_like_7 Glycosyltra 67.5 36 0.00078 31.1 8.8 38 120-159 73-112 (367)
122 TIGR03087 stp1 sugar transfera 67.2 5.8 0.00013 37.2 3.5 31 27-58 9-40 (397)
123 PF04413 Glycos_transf_N: 3-De 67.1 41 0.00089 27.8 8.1 100 22-160 22-126 (186)
124 cd03811 GT1_WabH_like This fam 66.8 9.2 0.0002 34.2 4.6 30 30-59 11-40 (353)
125 PF02951 GSH-S_N: Prokaryotic 66.7 11 0.00023 28.7 4.1 38 22-59 2-42 (119)
126 PF02571 CbiJ: Precorrin-6x re 66.6 38 0.00083 29.5 8.1 39 119-159 56-100 (249)
127 COG1797 CobB Cobyrinic acid a, 65.7 41 0.00088 31.8 8.3 32 23-54 4-35 (451)
128 PF00448 SRP54: SRP54-type pro 65.5 80 0.0017 26.4 10.2 38 22-59 3-40 (196)
129 TIGR02655 circ_KaiC circadian 65.0 1.1E+02 0.0023 29.8 11.7 46 21-66 264-309 (484)
130 PF12146 Hydrolase_4: Putative 65.0 14 0.0003 25.7 4.2 33 22-54 17-49 (79)
131 PRK14099 glycogen synthase; Pr 64.6 12 0.00025 36.4 5.0 39 19-57 2-46 (485)
132 TIGR01425 SRP54_euk signal rec 64.4 94 0.002 29.6 10.7 40 21-60 101-140 (429)
133 PRK10867 signal recognition pa 64.4 89 0.0019 29.8 10.6 42 21-62 101-143 (433)
134 TIGR02149 glgA_Coryne glycogen 64.0 82 0.0018 29.1 10.6 22 35-57 20-41 (388)
135 PRK01077 cobyrinic acid a,c-di 63.8 1.2E+02 0.0026 29.1 11.7 35 22-56 5-40 (451)
136 PLN02605 monogalactosyldiacylg 63.7 59 0.0013 30.3 9.4 32 23-54 2-36 (382)
137 COG1484 DnaC DNA replication p 63.5 13 0.00028 32.6 4.6 45 21-65 106-150 (254)
138 TIGR03088 stp2 sugar transfera 63.2 92 0.002 28.6 10.7 32 25-56 7-39 (374)
139 cd02069 methionine_synthase_B1 62.8 41 0.00088 28.6 7.4 45 19-63 87-131 (213)
140 COG1618 Predicted nucleotide k 62.7 59 0.0013 26.3 7.6 38 20-57 5-43 (179)
141 PF04127 DFP: DNA / pantothena 62.5 8.7 0.00019 31.8 3.2 34 23-58 20-53 (185)
142 PF08323 Glyco_transf_5: Starc 61.7 8.6 0.00019 33.5 3.2 27 32-58 17-43 (245)
143 COG0552 FtsY Signal recognitio 61.4 1.2E+02 0.0026 27.6 10.2 42 20-61 139-180 (340)
144 TIGR00959 ffh signal recogniti 61.0 1.1E+02 0.0024 29.1 10.6 42 21-62 100-142 (428)
145 COG2910 Putative NADH-flavin r 60.5 8.8 0.00019 31.5 2.7 20 38-57 14-33 (211)
146 PRK06321 replicative DNA helic 60.0 1.7E+02 0.0037 28.3 12.0 42 22-63 228-270 (472)
147 cd02071 MM_CoA_mut_B12_BD meth 59.9 47 0.001 25.2 6.7 40 22-61 1-40 (122)
148 PRK11823 DNA repair protein Ra 59.9 1.6E+02 0.0034 28.3 11.6 43 22-64 82-124 (446)
149 PF02684 LpxB: Lipid-A-disacch 59.6 93 0.002 29.0 9.6 32 130-161 81-117 (373)
150 cd03795 GT1_like_4 This family 59.5 15 0.00033 33.3 4.7 31 30-60 13-43 (357)
151 COG2185 Sbm Methylmalonyl-CoA 58.9 19 0.0004 28.3 4.2 39 19-57 11-49 (143)
152 PRK08305 spoVFB dipicolinate s 58.8 15 0.00033 30.7 4.0 38 21-59 6-44 (196)
153 PLN02316 synthase/transferase 58.6 28 0.0006 37.0 6.6 40 20-59 587-632 (1036)
154 TIGR03568 NeuC_NnaA UDP-N-acet 58.6 62 0.0013 30.1 8.5 39 118-158 82-123 (365)
155 PRK11889 flhF flagellar biosyn 57.3 1.3E+02 0.0028 28.5 10.0 40 21-60 242-281 (436)
156 cd03789 GT1_LPS_heptosyltransf 55.8 74 0.0016 28.0 8.3 43 22-64 1-45 (279)
157 TIGR00064 ftsY signal recognit 55.2 1.5E+02 0.0033 26.2 11.2 39 21-59 73-111 (272)
158 cd01840 SGNH_hydrolase_yrhL_li 54.8 22 0.00047 28.1 4.2 36 295-331 51-86 (150)
159 PF04244 DPRP: Deoxyribodipyri 54.2 22 0.00048 30.4 4.4 25 33-57 47-71 (224)
160 TIGR03492 conserved hypothetic 53.9 55 0.0012 30.8 7.4 31 130-161 92-122 (396)
161 PRK06849 hypothetical protein; 53.7 1.5E+02 0.0032 27.7 10.3 35 21-59 5-39 (389)
162 PRK05636 replicative DNA helic 53.4 1.4E+02 0.003 29.2 10.2 43 21-63 266-309 (505)
163 KOG2941 Beta-1,4-mannosyltrans 53.3 1.9E+02 0.004 26.7 11.3 60 19-84 11-70 (444)
164 cd03412 CbiK_N Anaerobic cobal 52.4 27 0.00058 26.8 4.2 38 296-333 2-41 (127)
165 TIGR00416 sms DNA repair prote 52.0 1.9E+02 0.004 27.9 10.7 43 22-64 96-138 (454)
166 PRK05986 cob(I)alamin adenolsy 51.9 1.4E+02 0.003 24.9 10.8 37 19-55 21-57 (191)
167 PLN02939 transferase, transfer 51.8 28 0.00061 36.5 5.3 40 19-58 480-525 (977)
168 PF01210 NAD_Gly3P_dh_N: NAD-d 51.7 12 0.00026 30.0 2.3 21 38-58 12-32 (157)
169 TIGR02195 heptsyl_trn_II lipop 51.6 77 0.0017 28.8 7.9 42 22-63 1-44 (334)
170 PRK14092 2-amino-4-hydroxy-6-h 51.2 37 0.0008 27.4 4.9 29 296-324 8-36 (163)
171 PF13450 NAD_binding_8: NAD(P) 51.1 20 0.00044 23.9 3.0 20 38-57 9-28 (68)
172 PRK05920 aromatic acid decarbo 50.3 33 0.00072 28.9 4.7 40 21-61 4-43 (204)
173 smart00851 MGS MGS-like domain 49.9 89 0.0019 22.0 7.8 27 37-65 2-28 (90)
174 TIGR02852 spore_dpaB dipicolin 49.7 23 0.00049 29.4 3.6 37 22-58 2-38 (187)
175 PF13844 Glyco_transf_41: Glyc 49.0 34 0.00073 32.9 5.1 73 294-370 283-356 (468)
176 TIGR00379 cobB cobyrinic acid 48.9 2.4E+02 0.0052 27.1 11.0 30 27-56 7-36 (449)
177 PRK14098 glycogen synthase; Pr 48.8 33 0.00071 33.4 5.2 37 21-57 6-48 (489)
178 cd01424 MGS_CPS_II Methylglyox 48.7 1.1E+02 0.0023 22.6 8.5 84 32-157 10-100 (110)
179 cd03799 GT1_amsK_like This is 48.4 33 0.00072 31.0 5.0 28 31-58 11-38 (355)
180 PRK09165 replicative DNA helic 48.2 1.9E+02 0.0042 28.2 10.3 43 22-64 219-276 (497)
181 PRK07773 replicative DNA helic 48.1 1.9E+02 0.004 30.7 10.8 44 21-64 218-262 (886)
182 KOG0780 Signal recognition par 47.8 1.8E+02 0.0039 27.3 9.1 40 21-60 102-141 (483)
183 cd03822 GT1_ecORF704_like This 47.7 27 0.00059 31.6 4.3 28 31-58 13-40 (366)
184 PRK14974 cell division protein 47.7 2.3E+02 0.0049 26.1 10.2 39 21-59 141-179 (336)
185 PRK00784 cobyric acid synthase 46.8 2.1E+02 0.0045 27.9 10.3 35 22-56 4-39 (488)
186 KOG4626 O-linked N-acetylgluco 46.8 37 0.0008 33.6 4.9 44 294-337 757-800 (966)
187 PRK12342 hypothetical protein; 46.7 46 0.00099 29.2 5.2 39 121-161 101-145 (254)
188 COG1090 Predicted nucleoside-d 46.4 2.1E+02 0.0046 25.4 9.3 20 38-57 12-31 (297)
189 COG0763 LpxB Lipid A disacchar 45.9 1.8E+02 0.0038 27.1 8.9 44 118-164 75-123 (381)
190 PRK09620 hypothetical protein; 45.2 41 0.00088 28.9 4.7 33 23-57 20-52 (229)
191 cd01452 VWA_26S_proteasome_sub 45.2 1.8E+02 0.0039 24.1 8.9 62 21-83 109-173 (187)
192 TIGR01498 folK 2-amino-4-hydro 45.1 22 0.00048 27.4 2.7 30 298-327 1-30 (127)
193 PRK00090 bioD dithiobiotin syn 45.1 1.9E+02 0.0041 24.4 10.4 29 27-55 7-35 (222)
194 PRK14089 ipid-A-disaccharide s 45.0 57 0.0012 30.1 5.8 45 119-164 65-114 (347)
195 PRK02122 glucosamine-6-phospha 44.9 48 0.001 33.5 5.7 35 20-55 370-404 (652)
196 TIGR01501 MthylAspMutase methy 44.1 1.4E+02 0.003 23.2 7.0 42 21-62 2-43 (134)
197 PF06925 MGDG_synth: Monogalac 43.6 47 0.001 26.8 4.7 42 117-160 77-124 (169)
198 TIGR02113 coaC_strep phosphopa 42.9 40 0.00087 27.7 4.1 37 22-59 2-38 (177)
199 PF07355 GRDB: Glycine/sarcosi 42.8 59 0.0013 29.7 5.3 38 119-158 70-117 (349)
200 PRK07688 thiamine/molybdopteri 42.4 2.2E+02 0.0048 26.2 9.2 32 20-56 24-56 (339)
201 COG2120 Uncharacterized protei 42.4 50 0.0011 28.6 4.8 33 22-55 13-45 (237)
202 PRK07313 phosphopantothenoylcy 41.8 33 0.00072 28.3 3.5 39 22-61 3-41 (182)
203 COG0003 ArsA Predicted ATPase 41.4 2.6E+02 0.0057 25.5 9.4 40 22-61 3-43 (322)
204 TIGR03878 thermo_KaiC_2 KaiC d 41.0 2.5E+02 0.0054 24.6 10.5 40 21-60 37-76 (259)
205 PF00070 Pyr_redox: Pyridine n 40.7 45 0.00097 22.8 3.6 23 36-58 10-32 (80)
206 PRK03359 putative electron tra 40.7 61 0.0013 28.4 5.1 39 121-161 104-148 (256)
207 PF02558 ApbA: Ketopantoate re 40.5 43 0.00094 26.2 3.9 21 38-58 11-31 (151)
208 cd02065 B12-binding_like B12 b 40.3 91 0.002 23.3 5.6 39 23-61 2-40 (125)
209 COG4088 Predicted nucleotide k 40.3 42 0.00091 28.4 3.7 35 22-56 3-37 (261)
210 PRK05632 phosphate acetyltrans 40.0 4E+02 0.0087 27.3 11.5 36 22-57 4-40 (684)
211 TIGR02329 propionate_PrpR prop 39.4 3.2E+02 0.0069 27.0 10.3 29 130-161 144-172 (526)
212 PLN00016 RNA-binding protein; 39.1 41 0.00088 31.3 4.1 37 21-57 53-89 (378)
213 COG1492 CobQ Cobyric acid synt 39.0 2.1E+02 0.0046 27.6 8.6 43 117-159 111-164 (486)
214 cd01141 TroA_d Periplasmic bin 38.9 54 0.0012 26.8 4.4 38 119-159 60-99 (186)
215 COG0381 WecB UDP-N-acetylgluco 38.8 1.7E+02 0.0037 27.3 7.8 109 26-158 8-122 (383)
216 PRK06732 phosphopantothenate-- 38.8 35 0.00076 29.3 3.3 33 23-57 17-49 (229)
217 PRK10416 signal recognition pa 38.6 3.1E+02 0.0066 25.0 11.1 39 21-59 115-153 (318)
218 TIGR00421 ubiX_pad polyprenyl 38.5 41 0.00089 27.7 3.5 38 23-61 2-39 (181)
219 cd01421 IMPCH Inosine monophos 38.1 1.6E+02 0.0036 24.3 6.8 30 35-66 11-40 (187)
220 COG2845 Uncharacterized protei 37.5 41 0.00088 30.3 3.4 49 282-330 165-232 (354)
221 PF09314 DUF1972: Domain of un 37.4 52 0.0011 27.2 3.9 46 32-84 18-63 (185)
222 TIGR02699 archaeo_AfpA archaeo 37.2 57 0.0012 26.7 4.1 38 23-61 2-41 (174)
223 PF06180 CbiK: Cobalt chelatas 37.2 62 0.0013 28.5 4.6 39 296-334 2-43 (262)
224 PF03205 MobB: Molybdopterin g 36.5 77 0.0017 24.8 4.6 33 22-54 2-34 (140)
225 PRK11519 tyrosine kinase; Prov 35.9 55 0.0012 33.7 4.7 38 21-58 526-565 (719)
226 PRK13982 bifunctional SbtC-lik 35.8 36 0.00077 32.8 3.1 39 20-58 256-306 (475)
227 cd02034 CooC The accessory pro 35.1 1E+02 0.0022 23.2 5.0 37 22-58 1-37 (116)
228 PRK09219 xanthine phosphoribos 35.0 97 0.0021 25.7 5.2 40 120-161 41-82 (189)
229 cd06533 Glyco_transf_WecG_TagA 34.9 1.5E+02 0.0032 24.0 6.3 86 229-333 48-133 (171)
230 PRK14491 putative bifunctional 34.7 83 0.0018 31.5 5.6 44 13-56 3-46 (597)
231 PRK12311 rpsB 30S ribosomal pr 34.5 58 0.0013 29.6 4.1 33 130-162 151-185 (326)
232 KOG0541 Alkyl hydroperoxide re 34.2 1.1E+02 0.0024 24.4 5.0 53 30-83 60-112 (171)
233 PRK13604 luxD acyl transferase 34.0 90 0.0019 28.2 5.1 33 22-54 38-70 (307)
234 TIGR00745 apbA_panE 2-dehydrop 33.2 44 0.00096 29.6 3.2 19 39-57 5-23 (293)
235 TIGR01918 various_sel_PB selen 32.9 1E+02 0.0023 29.0 5.4 39 119-159 66-114 (431)
236 TIGR01917 gly_red_sel_B glycin 32.8 1E+02 0.0022 29.0 5.4 39 119-159 66-114 (431)
237 COG2894 MinD Septum formation 32.8 89 0.0019 26.8 4.5 36 22-57 3-40 (272)
238 cd03115 SRP The signal recogni 32.7 2.6E+02 0.0056 22.4 10.9 38 23-60 3-40 (173)
239 COG3349 Uncharacterized conser 32.7 36 0.00079 32.7 2.6 31 22-57 2-32 (485)
240 cd01983 Fer4_NifH The Fer4_Nif 32.5 1.2E+02 0.0025 21.0 4.9 33 23-55 2-34 (99)
241 COG0052 RpsB Ribosomal protein 32.5 3.4E+02 0.0073 23.7 11.2 34 130-163 155-190 (252)
242 PRK03094 hypothetical protein; 31.8 46 0.001 23.2 2.3 21 37-57 10-30 (80)
243 COG0503 Apt Adenine/guanine ph 31.7 1.3E+02 0.0029 24.6 5.5 37 120-158 44-82 (179)
244 PRK00652 lpxK tetraacyldisacch 31.7 97 0.0021 28.3 5.1 35 21-55 50-86 (325)
245 PLN02211 methyl indole-3-aceta 31.7 98 0.0021 27.2 5.1 43 14-57 12-54 (273)
246 PF03808 Glyco_tran_WecB: Glyc 31.6 1.8E+02 0.004 23.5 6.3 85 229-333 50-135 (172)
247 PRK06029 3-octaprenyl-4-hydrox 31.4 78 0.0017 26.2 4.0 39 22-61 3-42 (185)
248 PRK06249 2-dehydropantoate 2-r 31.3 64 0.0014 29.2 3.9 34 20-58 5-38 (313)
249 COG1255 Uncharacterized protei 31.3 55 0.0012 24.6 2.7 27 22-54 16-42 (129)
250 PRK08939 primosomal protein Dn 31.3 72 0.0016 28.8 4.2 41 21-61 157-197 (306)
251 PF13460 NAD_binding_10: NADH( 31.2 53 0.0012 26.5 3.2 21 38-58 12-32 (183)
252 PF03698 UPF0180: Uncharacteri 31.0 47 0.001 23.2 2.2 22 37-58 10-31 (80)
253 TIGR01012 Sa_S2_E_A ribosomal 31.0 72 0.0016 26.7 3.8 33 130-162 107-141 (196)
254 PRK05973 replicative DNA helic 30.7 1.3E+02 0.0027 26.1 5.4 45 21-65 65-109 (237)
255 KOG1014 17 beta-hydroxysteroid 30.7 52 0.0011 29.5 3.0 31 22-55 50-80 (312)
256 cd02032 Bchl_like This family 30.5 93 0.002 27.2 4.8 34 22-55 2-35 (267)
257 COG0467 RAD55 RecA-superfamily 30.5 1.3E+02 0.0028 26.2 5.7 46 21-66 24-69 (260)
258 COG2210 Peroxiredoxin family p 30.4 1.2E+02 0.0025 23.7 4.5 34 24-57 7-40 (137)
259 TIGR00313 cobQ cobyric acid sy 30.3 5.2E+02 0.011 25.1 12.2 31 27-57 6-36 (475)
260 PRK10239 2-amino-4-hydroxy-6-h 30.2 56 0.0012 26.3 2.9 27 297-323 3-29 (159)
261 cd06559 Endonuclease_V Endonuc 29.9 68 0.0015 27.1 3.5 41 121-161 83-130 (208)
262 COG0300 DltE Short-chain dehyd 29.8 55 0.0012 28.8 3.1 31 22-55 7-37 (265)
263 PF02702 KdpD: Osmosensitive K 29.7 1.1E+02 0.0024 25.8 4.6 38 20-57 5-42 (211)
264 PRK06719 precorrin-2 dehydroge 29.6 70 0.0015 25.6 3.4 35 19-58 12-46 (157)
265 TIGR02193 heptsyl_trn_I lipopo 29.5 71 0.0015 28.8 3.9 43 22-64 1-45 (319)
266 PRK04020 rps2P 30S ribosomal p 29.4 77 0.0017 26.7 3.7 32 131-162 114-147 (204)
267 TIGR02700 flavo_MJ0208 archaeo 29.4 92 0.002 26.8 4.4 38 23-61 2-42 (234)
268 PF01288 HPPK: 7,8-dihydro-6-h 29.4 65 0.0014 24.7 3.1 26 299-324 1-26 (127)
269 COG0569 TrkA K+ transport syst 29.4 49 0.0011 28.3 2.7 21 36-56 11-31 (225)
270 PRK04940 hypothetical protein; 29.4 1.1E+02 0.0025 25.1 4.6 32 131-162 60-92 (180)
271 PLN02949 transferase, transfer 29.4 5.3E+02 0.011 24.9 13.5 129 20-165 33-173 (463)
272 COG0162 TyrS Tyrosyl-tRNA synt 29.3 64 0.0014 30.3 3.6 36 21-57 35-73 (401)
273 PF10657 RC-P840_PscD: Photosy 29.3 85 0.0018 23.6 3.4 40 20-59 46-85 (144)
274 TIGR00176 mobB molybdopterin-g 29.3 1.2E+02 0.0025 24.2 4.7 34 23-56 2-35 (155)
275 cd00483 HPPK 7,8-dihydro-6-hyd 29.2 56 0.0012 25.1 2.7 27 298-324 1-27 (128)
276 PF01738 DLH: Dienelactone hyd 29.2 1.3E+02 0.0027 25.3 5.2 33 22-54 15-47 (218)
277 PRK06835 DNA replication prote 29.1 85 0.0018 28.7 4.3 42 21-62 184-225 (329)
278 TIGR00521 coaBC_dfp phosphopan 29.0 92 0.002 29.3 4.6 42 21-63 4-45 (390)
279 PRK04148 hypothetical protein; 29.0 59 0.0013 25.3 2.8 28 21-54 18-45 (134)
280 PF03853 YjeF_N: YjeF-related 29.0 65 0.0014 26.1 3.2 35 20-55 25-59 (169)
281 cd01829 SGNH_hydrolase_peri2 S 28.9 1.2E+02 0.0026 24.9 4.9 47 284-331 50-115 (200)
282 PLN02891 IMP cyclohydrolase 28.7 3.4E+02 0.0075 26.6 8.2 90 35-140 33-123 (547)
283 PF12695 Abhydrolase_5: Alpha/ 28.6 1.3E+02 0.0028 22.8 4.9 33 25-57 3-35 (145)
284 PF13614 AAA_31: AAA domain; P 28.6 1.8E+02 0.0038 22.7 5.7 39 23-61 4-42 (157)
285 PF01695 IstB_IS21: IstB-like 28.3 81 0.0018 25.8 3.7 42 20-61 47-88 (178)
286 PRK06603 enoyl-(acyl carrier p 28.1 1.2E+02 0.0027 26.3 5.1 32 22-54 9-40 (260)
287 TIGR01281 DPOR_bchL light-inde 28.1 1.1E+02 0.0024 26.7 4.8 33 22-54 2-34 (268)
288 PF07894 DUF1669: Protein of u 28.0 1.1E+02 0.0024 27.2 4.6 45 115-160 133-182 (284)
289 PF09001 DUF1890: Domain of un 28.0 47 0.001 25.8 2.0 30 32-61 11-40 (139)
290 PRK05299 rpsB 30S ribosomal pr 27.9 83 0.0018 27.6 3.8 33 130-162 156-190 (258)
291 cd03466 Nitrogenase_NifN_2 Nit 27.8 5.4E+02 0.012 24.5 11.9 35 119-158 362-396 (429)
292 PRK00039 ruvC Holliday junctio 27.8 1.7E+02 0.0037 23.6 5.4 48 114-163 46-108 (164)
293 TIGR01011 rpsB_bact ribosomal 27.6 90 0.002 26.8 4.0 33 130-162 154-188 (225)
294 PLN02293 adenine phosphoribosy 27.6 1.9E+02 0.0041 24.0 5.7 38 119-158 52-91 (187)
295 COG2085 Predicted dinucleotide 27.5 71 0.0015 27.0 3.1 24 37-60 13-36 (211)
296 COG2874 FlaH Predicted ATPases 27.5 2.5E+02 0.0054 24.1 6.2 38 23-60 31-68 (235)
297 PF03403 PAF-AH_p_II: Platelet 27.3 77 0.0017 29.6 3.8 37 19-55 98-134 (379)
298 TIGR02114 coaB_strep phosphopa 27.2 62 0.0013 27.8 2.9 31 23-55 16-46 (227)
299 CHL00067 rps2 ribosomal protei 27.2 94 0.002 26.8 4.0 33 130-162 160-194 (230)
300 PF03796 DnaB_C: DnaB-like hel 27.1 1.8E+02 0.0038 25.4 5.9 43 22-64 21-64 (259)
301 PF07015 VirC1: VirC1 protein; 26.5 1.9E+02 0.0042 24.9 5.6 39 24-62 6-44 (231)
302 TIGR03880 KaiC_arch_3 KaiC dom 26.5 3.9E+02 0.0085 22.5 12.1 44 22-65 18-61 (224)
303 COG1087 GalE UDP-glucose 4-epi 26.4 4.9E+02 0.011 23.6 10.1 43 286-333 238-281 (329)
304 cd01124 KaiC KaiC is a circadi 26.1 2.1E+02 0.0045 23.1 5.9 43 23-65 2-44 (187)
305 PRK13886 conjugal transfer pro 26.1 2E+02 0.0042 25.0 5.7 40 20-59 3-42 (241)
306 PRK06731 flhF flagellar biosyn 26.1 4.6E+02 0.01 23.2 10.6 39 21-59 76-114 (270)
307 TIGR00708 cobA cob(I)alamin ad 26.1 3.7E+02 0.0079 22.0 12.0 34 21-54 6-39 (173)
308 PRK00881 purH bifunctional pho 26.1 2.9E+02 0.0062 27.0 7.2 30 35-66 15-44 (513)
309 PF03308 ArgK: ArgK protein; 25.7 1.7E+02 0.0036 25.8 5.2 42 19-60 28-69 (266)
310 cd00861 ProRS_anticodon_short 25.6 1.4E+02 0.003 20.9 4.2 44 22-65 3-49 (94)
311 PRK12367 short chain dehydroge 25.4 1.2E+02 0.0026 26.2 4.5 42 12-56 5-46 (245)
312 PF14626 RNase_Zc3h12a_2: Zc3h 25.3 1E+02 0.0022 23.3 3.3 28 34-61 9-36 (122)
313 PRK05579 bifunctional phosphop 25.3 1.2E+02 0.0027 28.5 4.7 43 20-63 6-48 (399)
314 COG1763 MobB Molybdopterin-gua 25.2 1.8E+02 0.004 23.4 5.1 34 22-55 4-37 (161)
315 cd03416 CbiX_SirB_N Sirohydroc 25.2 1.3E+02 0.0028 21.6 4.0 35 297-331 2-38 (101)
316 PRK10964 ADP-heptose:LPS hepto 25.1 1.1E+02 0.0024 27.6 4.4 40 22-61 2-43 (322)
317 cd01981 Pchlide_reductase_B Pc 25.0 1.2E+02 0.0027 28.8 4.8 35 121-160 362-396 (430)
318 KOG0332 ATP-dependent RNA heli 24.9 1E+02 0.0022 28.6 3.9 25 37-61 343-367 (477)
319 COG2099 CobK Precorrin-6x redu 24.9 1E+02 0.0022 26.8 3.7 40 118-159 55-100 (257)
320 PF04493 Endonuclease_5: Endon 24.9 1.3E+02 0.0028 25.4 4.3 41 121-161 79-126 (206)
321 TIGR01007 eps_fam capsular exo 24.7 1.5E+02 0.0033 24.6 4.8 32 27-58 25-56 (204)
322 cd01147 HemV-2 Metal binding p 24.7 1.3E+02 0.0028 26.0 4.6 39 120-161 66-107 (262)
323 cd01828 sialate_O-acetylestera 24.6 1.5E+02 0.0033 23.5 4.7 46 284-331 40-94 (169)
324 PF12894 Apc4_WD40: Anaphase-p 24.5 19 0.00041 22.1 -0.5 20 358-377 14-33 (47)
325 PRK10916 ADP-heptose:LPS hepto 24.4 5.5E+02 0.012 23.4 9.6 35 121-161 255-289 (348)
326 TIGR01744 XPRTase xanthine pho 24.0 1.9E+02 0.0042 24.0 5.2 31 130-160 49-81 (191)
327 PF01380 SIS: SIS domain SIS d 23.9 1.9E+02 0.004 21.7 4.9 32 30-61 62-93 (131)
328 PF01266 DAO: FAD dependent ox 23.9 73 0.0016 28.8 3.0 20 38-57 12-31 (358)
329 PF03720 UDPG_MGDP_dh_C: UDP-g 23.8 1.5E+02 0.0032 21.7 4.1 29 35-63 17-45 (106)
330 PLN03050 pyridoxine (pyridoxam 23.7 76 0.0016 27.6 2.8 33 21-56 61-95 (246)
331 PLN02496 probable phosphopanto 23.7 1.3E+02 0.0028 25.5 4.1 41 19-61 18-58 (209)
332 TIGR03837 efp_adjacent_2 conse 23.4 1E+02 0.0022 28.5 3.7 31 28-58 8-39 (371)
333 CHL00072 chlL photochlorophyll 23.3 1.7E+02 0.0036 26.2 5.0 34 22-55 2-35 (290)
334 TIGR01689 EcbF-BcbF capsule bi 23.3 1.2E+02 0.0027 23.2 3.6 26 36-61 28-53 (126)
335 PRK09739 hypothetical protein; 23.3 2.3E+02 0.005 23.5 5.7 20 36-55 22-41 (199)
336 COG2109 BtuR ATP:corrinoid ade 23.3 4.4E+02 0.0096 22.0 10.6 37 19-55 27-63 (198)
337 PRK06522 2-dehydropantoate 2-r 23.2 99 0.0021 27.6 3.6 30 22-56 2-31 (304)
338 TIGR01743 purR_Bsub pur operon 23.1 1.9E+02 0.0041 25.6 5.1 30 130-159 127-158 (268)
339 cd02040 NifH NifH gene encodes 23.1 1.5E+02 0.0033 25.8 4.8 34 22-55 3-36 (270)
340 CHL00076 chlB photochlorophyll 23.0 1.3E+02 0.0029 29.4 4.7 34 121-159 366-399 (513)
341 cd01143 YvrC Periplasmic bindi 22.9 1.5E+02 0.0032 24.2 4.4 38 120-160 52-90 (195)
342 PF00551 Formyl_trans_N: Formy 22.8 4.2E+02 0.0091 21.6 9.7 41 119-161 69-110 (181)
343 PF02350 Epimerase_2: UDP-N-ac 22.8 71 0.0015 29.4 2.7 43 294-336 179-226 (346)
344 PF05762 VWA_CoxE: VWA domain 22.8 2E+02 0.0044 24.4 5.3 37 21-57 151-188 (222)
345 PF06506 PrpR_N: Propionate ca 22.6 90 0.0019 25.4 3.0 29 130-161 124-152 (176)
346 COG0451 WcaG Nucleoside-diphos 22.5 1.1E+02 0.0025 27.1 3.9 25 31-57 9-33 (314)
347 TIGR03446 mycothiol_Mca mycoth 22.5 1.6E+02 0.0035 26.3 4.7 32 23-55 4-35 (283)
348 cd01965 Nitrogenase_MoFe_beta_ 22.5 1.5E+02 0.0031 28.3 4.8 34 121-159 363-396 (428)
349 PTZ00254 40S ribosomal protein 22.5 1.2E+02 0.0027 26.4 3.8 32 131-162 118-151 (249)
350 PF05728 UPF0227: Uncharacteri 22.5 1.9E+02 0.0041 24.0 4.8 43 120-162 48-91 (187)
351 cd01833 XynB_like SGNH_hydrola 22.3 1.7E+02 0.0036 22.9 4.5 46 284-330 31-85 (157)
352 PRK02910 light-independent pro 22.3 1.5E+02 0.0032 29.2 4.8 34 121-159 354-387 (519)
353 PRK06718 precorrin-2 dehydroge 22.1 1.5E+02 0.0033 24.8 4.3 34 20-58 10-43 (202)
354 PRK00771 signal recognition pa 22.1 2.2E+02 0.0047 27.3 5.7 42 20-61 95-136 (437)
355 TIGR01358 DAHP_synth_II 3-deox 22.0 2.2E+02 0.0047 27.1 5.5 22 313-334 326-347 (443)
356 TIGR01278 DPOR_BchB light-inde 22.0 1.5E+02 0.0032 29.1 4.7 35 121-160 356-390 (511)
357 PRK08309 short chain dehydroge 22.0 1.6E+02 0.0035 24.0 4.4 20 37-56 12-31 (177)
358 cd02037 MRP-like MRP (Multiple 21.8 1.7E+02 0.0036 23.5 4.4 34 24-57 4-37 (169)
359 PRK09213 pur operon repressor; 21.8 2.1E+02 0.0045 25.4 5.2 30 130-159 129-160 (271)
360 PF10087 DUF2325: Uncharacteri 21.7 2E+02 0.0044 20.6 4.4 35 131-165 48-88 (97)
361 PF02374 ArsA_ATPase: Anion-tr 21.7 2.2E+02 0.0048 25.7 5.5 39 23-61 4-42 (305)
362 PF10093 DUF2331: Uncharacteri 21.6 1.1E+02 0.0023 28.5 3.4 31 28-58 8-39 (374)
363 TIGR00234 tyrS tyrosyl-tRNA sy 21.4 91 0.002 29.2 3.0 34 23-57 35-71 (377)
364 PRK14494 putative molybdopteri 21.3 2E+02 0.0043 24.8 4.8 34 22-55 3-36 (229)
365 PF02606 LpxK: Tetraacyldisacc 21.2 1.2E+02 0.0027 27.7 3.8 34 23-56 40-73 (326)
366 KOG0081 GTPase Rab27, small G 21.1 3.6E+02 0.0078 21.7 5.7 35 129-163 122-166 (219)
367 cd00550 ArsA_ATPase Oxyanion-t 21.1 1.7E+02 0.0036 25.6 4.5 37 23-59 3-39 (254)
368 cd02033 BchX Chlorophyllide re 21.1 2.1E+02 0.0046 26.2 5.2 39 21-59 32-70 (329)
369 PRK07952 DNA replication prote 21.0 1.6E+02 0.0034 25.7 4.2 38 22-59 101-138 (244)
370 cd03409 Chelatase_Class_II Cla 20.9 2.6E+02 0.0057 19.8 5.0 37 297-333 2-41 (101)
371 PRK13869 plasmid-partitioning 20.9 1.7E+02 0.0038 27.6 4.8 27 29-55 131-157 (405)
372 TIGR03172 probable selenium-de 20.8 1.3E+02 0.0029 25.9 3.7 30 30-59 7-36 (232)
373 TIGR00355 purH phosphoribosyla 20.7 3.9E+02 0.0085 26.1 7.0 37 35-82 11-47 (511)
374 PRK01906 tetraacyldisaccharide 20.7 1.3E+02 0.0029 27.6 3.9 31 25-55 63-93 (338)
375 cd00561 CobA_CobO_BtuR ATP:cor 20.7 4.5E+02 0.0098 21.1 12.0 33 22-54 4-36 (159)
376 PRK09361 radB DNA repair and r 20.7 2.3E+02 0.005 23.9 5.3 37 21-57 24-60 (225)
377 PF08357 SEFIR: SEFIR domain; 20.7 1.4E+02 0.003 23.4 3.6 30 24-53 5-35 (150)
378 cd02067 B12-binding B12 bindin 20.6 1.6E+02 0.0035 21.9 3.8 37 19-55 49-86 (119)
379 cd03109 DTBS Dethiobiotin synt 20.5 2E+02 0.0044 22.1 4.4 35 24-58 3-37 (134)
380 cd01715 ETF_alpha The electron 20.4 2.4E+02 0.0052 22.6 5.1 39 118-158 72-113 (168)
381 PRK13234 nifH nitrogenase redu 20.4 2.2E+02 0.0047 25.5 5.2 34 22-55 6-39 (295)
382 PF02780 Transketolase_C: Tran 20.3 1.7E+02 0.0037 22.0 4.0 34 20-55 9-42 (124)
383 PLN02291 phospho-2-dehydro-3-d 20.3 2.4E+02 0.0052 27.0 5.4 22 313-334 346-367 (474)
384 PF01497 Peripla_BP_2: Peripla 20.3 1.4E+02 0.003 25.3 3.8 40 120-162 52-93 (238)
385 COG0543 UbiB 2-polyprenylpheno 20.2 1.4E+02 0.003 26.1 3.8 37 23-61 110-148 (252)
386 TIGR00288 conserved hypothetic 20.1 1.5E+02 0.0032 23.9 3.5 32 22-58 108-139 (160)
387 PRK06222 ferredoxin-NADP(+) re 20.0 1.6E+02 0.0034 26.2 4.2 38 21-60 99-136 (281)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=5.9e-57 Score=423.11 Aligned_cols=361 Identities=58% Similarity=1.060 Sum_probs=264.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENID 99 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
+.|++++|+|++||++||++||+.|+.||+.||+++++.+..++.+........+..++++.+|++...+++|++.+...
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 47999999999999999999999999999999999999887666554321111112489999998755457887655433
Q ss_pred CCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhcCCC
Q 046582 100 MLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSKVHE 179 (381)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~ 179 (381)
......+...+......+.+.+++++++...+++|||+|.|++|+..+|+++|||.+.|++++++....++++.......
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~ 167 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHL 167 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccc
Confidence 22222344445555566778888888764357899999999999999999999999999999988777665543322111
Q ss_pred CCCCCCCccccCCCCCCCCcccCcCCCCCCCC-CcHHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHccCCCceEEe
Q 046582 180 NVASDSEYFNIPGLPDHIGFTRVQIPIPTHKR-DDKKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKKGKQGKVWCI 258 (381)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~~~~~~v~~v 258 (381)
....+..+..+|++|....++..+++ +++.+ ..+..+.........+++++++|||++||++++++++..+++++++|
T Consensus 168 ~~~~~~~~~~iPg~p~~~~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~V 246 (491)
T PLN02534 168 SVSSDSEPFVVPGMPQSIEITRAQLP-GAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCV 246 (491)
T ss_pred cCCCCCceeecCCCCccccccHHHCC-hhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEE
Confidence 11122234568888754446777888 65432 33333443333333457799999999999999999987666789999
Q ss_pred CcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEEeCCCchh
Q 046582 259 GPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVTRVGSKLE 338 (381)
Q Consensus 259 Gpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~~~~~~~~ 338 (381)
||++.......+...++......+.+|.+|||+++++|||||||||+..++++|+.+++.||+.++++|||+++.+....
T Consensus 247 GPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~ 326 (491)
T PLN02534 247 GPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHS 326 (491)
T ss_pred CcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCcccc
Confidence 99975321110000011100113457999999999999999999999999999999999999999999999999532111
Q ss_pred hhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 339 ELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 339 ~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
+.....+|++|.++++++|+++.+|+||.+||+|++|+|||||
T Consensus 327 ~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH 369 (491)
T PLN02534 327 ELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTH 369 (491)
T ss_pred chhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEec
Confidence 1111117899999988999999899999999999999999999
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-54 Score=405.77 Aligned_cols=352 Identities=34% Similarity=0.585 Sum_probs=260.5
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCC
Q 046582 18 ASQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCEN 97 (381)
Q Consensus 18 ~~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 97 (381)
.+++||+++|+|++||++||++||+.|+.+|+.||+++++.+..++.+... ...+++++.++++.. +++|++.+.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~lPdG~~~ 81 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSIPSGVEN 81 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCCCCCCcC
Confidence 356899999999999999999999999999999999999988876654321 113588888887654 478877665
Q ss_pred CCCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhcC
Q 046582 98 IDMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSKV 177 (381)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~~ 177 (381)
..... .+....+......+.+.+++++++...+++|||+|.|++|+..+|+++|||.+.|++++++.++.+++++....
T Consensus 82 ~~~~~-~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 82 VKDLP-PSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred hhhcc-hhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 43222 12233345555566677777777643467999999999999999999999999999999999888888754221
Q ss_pred CCC-CCCCCCc---cccCCCCCCCCcccCcCCCCCCCCC----cHHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHc
Q 046582 178 HEN-VASDSEY---FNIPGLPDHIGFTRVQIPIPTHKRD----DKKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKK 249 (381)
Q Consensus 178 ~~~-~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~ 249 (381)
... ...++.. ..+||++. ++.++++ .+++.. .....+.+.......++++++|||++||+++++++++
T Consensus 161 ~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 161 TKINPDDQNEILSFSKIPNCPK---YPWWQIS-SLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred ccccccccccccccCCCCCCCC---cChHhCc-hhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 110 0111111 24677764 7888888 666431 1222222333334567889999999999999999987
Q ss_pred cCC-CceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEE
Q 046582 250 GKQ-GKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFI 328 (381)
Q Consensus 250 ~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~l 328 (381)
.++ +++++|||+++..........++...+..+++|.+|||+++++|||||||||+..++.+++++++.+|+.++++||
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 655 6899999997542110000001111111356899999999988999999999999999999999999999999999
Q ss_pred EEEeCCCchh-hhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 329 WVTRVGSKLE-ELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 329 W~~~~~~~~~-~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
|+++.+.... .... +|++|.++++++|+++.+|+||.+||+|++|++||||
T Consensus 317 w~~~~~~~~~~~~~~--lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH 368 (477)
T PLN02863 317 WCVKEPVNEESDYSN--IPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTH 368 (477)
T ss_pred EEECCCcccccchhh--CCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEec
Confidence 9998543211 1123 8999999999999999899999999999999999999
No 3
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.4e-54 Score=402.57 Aligned_cols=349 Identities=29% Similarity=0.477 Sum_probs=250.6
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCC
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENI 98 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (381)
.+.||+++|+|++||++||++||+.|+.||..||+++++.+..++.+... ....+++++.++++.. +++|++.+..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~-dglp~~~~~~ 80 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSV-PGLPSSAESS 80 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCcc-CCCCCCcccc
Confidence 35799999999999999999999999999999999999988765543211 0112589999987654 3777654432
Q ss_pred CCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhcCC
Q 046582 99 DMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSKVH 178 (381)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~ 178 (381)
..... .....+......+.+.+++++++ .+++|||+|.|+.|+..+|+++|||.+.|+++++..++.++++......
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 81 TDVPY-TKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred cccch-hhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 21110 11122334445677889999887 4789999999999999999999999999999998877776544321111
Q ss_pred CCCCCCCCc-cccCCC-CC--CCCcccCcCCCCCCCCC----c-HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHc
Q 046582 179 ENVASDSEY-FNIPGL-PD--HIGFTRVQIPIPTHKRD----D-KKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKK 249 (381)
Q Consensus 179 ~~~~~~~~~-~~~p~~-~~--~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~ 249 (381)
.....++.. ..+|++ |. .+.++..+++ +++... . +..+. +......+++++++|||++||++++++++.
T Consensus 158 ~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 158 GDLRSTAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred ccCCCccccccCCCCcCCCCccccccHHHhh-HHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 111111111 124443 21 1124456777 665321 1 22222 333345678999999999999999999987
Q ss_pred cCCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEE
Q 046582 250 GKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIW 329 (381)
Q Consensus 250 ~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW 329 (381)
..++++++|||+.+....... .........++|.+|||+++++|||||||||+..++.+|+++++.||+.++++|||
T Consensus 236 ~~~~~v~~VGPl~~~~~~~~~---~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIEDDEE---DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred hhCCCeEEEecCCcccccccc---ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 655689999999753110000 00000012367999999998889999999999999999999999999999999999
Q ss_pred EEeCCCch-hh-hhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 330 VTRVGSKL-EE-LEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 330 ~~~~~~~~-~~-~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
++++.... .+ ... +|++|.++++++|+++.+|+||.+||+||+||+||||
T Consensus 313 v~r~~~~~~~~~~~~--lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtH 364 (472)
T PLN02670 313 VLRNEPGTTQNALEM--LPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTH 364 (472)
T ss_pred EEcCCcccccchhhc--CChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeec
Confidence 99964221 11 123 9999999999999998899999999999999999999
No 4
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=5.5e-54 Score=401.48 Aligned_cols=333 Identities=25% Similarity=0.355 Sum_probs=246.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLA-QHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENI 98 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~-~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (381)
++||+++|+|++||++||++||+.|+ ++|++||+++++.+..++.+... ...+++++.+|++.. +++++...
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~-~glp~~~~-- 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDI-SGLVDPSA-- 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccc-cCCCCCCc--
Confidence 57999999999999999999999998 79999999999987655432211 112588888886543 24442110
Q ss_pred CCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhc-C
Q 046582 99 DMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSK-V 177 (381)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~-~ 177 (381)
.....+......+.+.+++++++...+++|||+|.++.|+..+|+++|||.+.|+++++..++.+.+++... .
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 78 ------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred ------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 111223333445567788887764357899999999999999999999999999999988877666654321 1
Q ss_pred CC-CCCCCCCccccCCCCCCCCcccCcCCCCCC-CCCc-HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHcc----
Q 046582 178 HE-NVASDSEYFNIPGLPDHIGFTRVQIPIPTH-KRDD-KKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKKG---- 250 (381)
Q Consensus 178 ~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~~---- 250 (381)
.. ....+..+..+||++. ++..|++ ..+ .+.. ....+.+......+++++++|||++||++++++++..
T Consensus 152 ~~~~~~~~~~~~~iPg~~~---l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~ 227 (481)
T PLN02992 152 IKEEHTVQRKPLAMPGCEP---VRFEDTL-DAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLG 227 (481)
T ss_pred cccccccCCCCcccCCCCc---cCHHHhh-HhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccc
Confidence 11 0001112356888875 6777887 533 3322 1223333344567889999999999999999988652
Q ss_pred --CCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEE
Q 046582 251 --KQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFI 328 (381)
Q Consensus 251 --~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~l 328 (381)
.++++++|||+++.... ...+.+|.+|||+++++|||||||||+..++.+|+++|+.||+.++++||
T Consensus 228 ~~~~~~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~fl 296 (481)
T PLN02992 228 RVARVPVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFV 296 (481)
T ss_pred cccCCceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 12579999999753210 01356799999999989999999999999999999999999999999999
Q ss_pred EEEeCCCch---------------hhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 329 WVTRVGSKL---------------EELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 329 W~~~~~~~~---------------~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
|+++.+... ++..+. +|++|++|++++|+++.+|+||.+||+|++||+||||
T Consensus 297 W~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH 363 (481)
T PLN02992 297 WVVRPPVDGSACSAYFSANGGETRDNTPEY-LPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTH 363 (481)
T ss_pred EEEeCCcccccccccccCcccccccchhhh-CCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEec
Confidence 999853110 111223 8999999999999999999999999999999999999
No 5
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5.3e-53 Score=400.60 Aligned_cols=359 Identities=44% Similarity=0.799 Sum_probs=254.5
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhh--cCCCCeeEEEecCCCcccCCCCCCC
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARAT--QSGLQIRLTEIQFPWKEAGLPEGCE 96 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 96 (381)
++.||+++|+|++||++|+++||++|+.||++||+++++.+..++++...... ..+..+++..++++..++++|++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 35799999999999999999999999999999999999988876665432210 0111245555555543346776654
Q ss_pred CCCCCC------ChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHH
Q 046582 97 NIDMLP------SIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMN 170 (381)
Q Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~ 170 (381)
...... ...+...+....+.+.+.+++++++ .++||||+|.++.|+..+|+++|||.+.|++++++..+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 332110 1122333444455677788888876 57999999999999999999999999999999987777666
Q ss_pred HhhhhcCCCCCCCCCCccccCCCCCCCCcccCcCCCCCCCCCcHHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHcc
Q 046582 171 LLRDSKVHENVASDSEYFNIPGLPDHIGFTRVQIPIPTHKRDDKKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKKG 250 (381)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~~ 250 (381)
.+.................+|++|..+.++..+++ ..-....+...+........+++++++|||++||.+..+++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~ 240 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQIN-DADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSF 240 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcC-CCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhc
Confidence 54332111111111122347887643334455555 33211113334444444567788999999999999999988876
Q ss_pred CCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEE
Q 046582 251 KQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWV 330 (381)
Q Consensus 251 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~ 330 (381)
.+.++++|||+.+......+...++...+..+.+|.+|||+++++|||||||||+..++.+++.+++.+|+.++++|||+
T Consensus 241 ~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~ 320 (482)
T PLN03007 241 VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWV 320 (482)
T ss_pred cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 55679999998654221100000111111235789999999988999999999999999999999999999999999999
Q ss_pred EeCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 331 TRVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 331 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
++.+...++.... +|++|.++++++|+++.+|+||.+||+|++|++||||
T Consensus 321 ~~~~~~~~~~~~~-lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH 370 (482)
T PLN03007 321 VRKNENQGEKEEW-LPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTH 370 (482)
T ss_pred EecCCcccchhhc-CCHHHHHHhccCCEEEecCCCHHHHhccCccceeeec
Confidence 9964321111112 8999999999999999999999999999999999999
No 6
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.8e-53 Score=396.75 Aligned_cols=330 Identities=25% Similarity=0.381 Sum_probs=245.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENID 99 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
++|++++|+|++||++|+++||+.|++|||+||++|+..+..++.+.. ....++++..++++.. +++|++.+...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~-dgLp~g~~~~~ 78 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPV-NGLPAGAETTS 78 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCc-cCCCCCccccc
Confidence 579999999999999999999999999999999999887766554321 1112567777765422 36776644221
Q ss_pred CCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhcCCC
Q 046582 100 MLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSKVHE 179 (381)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~ 179 (381)
... ......+....+.+.+.+++++++ .++||||+| ++.|+..+|+++|||++.|+++++..+. +++++. .
T Consensus 79 ~l~-~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~ 149 (442)
T PLN02208 79 DIP-ISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----G 149 (442)
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----c
Confidence 110 112223344456677888888887 578999999 6789999999999999999999987654 444321 0
Q ss_pred CCCCCCCccccCCCCCC-CCcccCcCCCCCCCCCc-HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHccCCCceEE
Q 046582 180 NVASDSEYFNIPGLPDH-IGFTRVQIPIPTHKRDD-KKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKKGKQGKVWC 257 (381)
Q Consensus 180 ~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~~~~~~v~~ 257 (381)
.. ...+|++|.. +.++..+++ .+..... +..+..++.....+++++++|||++||++++++++...++++++
T Consensus 150 ~~-----~~~~pglp~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 150 KL-----GVPPPGYPSSKVLFRENDAH-ALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred cc-----CCCCCCCCCcccccCHHHcC-cccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 01 1125777641 224566777 5421111 22233333345668899999999999999999987766689999
Q ss_pred eCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEEeCCCch
Q 046582 258 IGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVTRVGSKL 337 (381)
Q Consensus 258 vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~~~~~~~ 337 (381)
|||+++.... ...++.+|.+|||+++++|||||||||+..++.+|+.+++.+++.++++|+|.++.+...
T Consensus 224 vGpl~~~~~~----------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 224 TGPMFPEPDT----------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred EeecccCcCC----------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 9999864210 012578999999999988999999999999999999999999988999999999854211
Q ss_pred -hhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 338 -EELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 338 -~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
..... +|++|+++++++|+++.+|+||.+||+||+||+||||
T Consensus 294 ~~~~~~--lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtH 336 (442)
T PLN02208 294 STVQEG--LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNH 336 (442)
T ss_pred cchhhh--CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEcc
Confidence 11123 9999999999999999999999999999999999999
No 7
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.3e-53 Score=393.99 Aligned_cols=334 Identities=28% Similarity=0.412 Sum_probs=246.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhH--HHHHHhhhcCCCCeeEEEecCCCcccCC-CCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQH-GAIVTIVTTPVNAARF--KTVLARATQSGLQIRLTEIQFPWKEAGL-PEGC 95 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~r-Gh~Vt~~t~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 95 (381)
++|++++|+|++||++||+.||+.|+.+ |..||++++..+...+ ........ ...+++++.+|++.. +++ +.+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~~- 79 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEPD- 79 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCCC-
Confidence 5799999999999999999999999987 9999999877665433 11111110 112588988886532 133 111
Q ss_pred CCCCCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCC-eEEEecchHHHHHHHHHhhh
Q 046582 96 ENIDMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVP-RIIFHGFSCFCLLCMNLLRD 174 (381)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP-~v~~~~~~~~~~~~~~~~~~ 174 (381)
. .....+......+.+.+++++++...+++|||+|.|++|+..+|+++||| .+.|++++++.+..+++++.
T Consensus 80 -------~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 80 -------A-TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred -------c-cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 0 12234455556677888988886534689999999999999999999999 58888888877767777654
Q ss_pred hcC-CCC-CCCCCCccccCCCCCCCCcccCcCCCCCCC-CCc--HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHc
Q 046582 175 SKV-HEN-VASDSEYFNIPGLPDHIGFTRVQIPIPTHK-RDD--KKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKK 249 (381)
Q Consensus 175 ~~~-~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~ 249 (381)
... ... ......+..+||+|. ++..++| .++. +.. +..+. +......+++++++|||++||+..+++++.
T Consensus 152 ~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp-~~~~~~~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~ 226 (470)
T PLN03015 152 LDTVVEGEYVDIKEPLKIPGCKP---VGPKELM-ETMLDRSDQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALRE 226 (470)
T ss_pred hhcccccccCCCCCeeeCCCCCC---CChHHCC-HhhcCCCcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 211 111 001123456899975 7888888 5443 321 22333 233346789999999999999999999876
Q ss_pred cC------CCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhC
Q 046582 250 GK------QGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEAS 323 (381)
Q Consensus 250 ~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~ 323 (381)
.. ++++++|||++..... ...+++|.+|||+++++|||||||||+..++.+|+++|+.+|+.+
T Consensus 227 ~~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s 295 (470)
T PLN03015 227 DMELNRVMKVPVYPIGPIVRTNVH-----------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELS 295 (470)
T ss_pred hcccccccCCceEEecCCCCCccc-----------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhC
Confidence 42 2579999999742110 013458999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCc--------hhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 324 KKPFIWVTRVGSK--------LEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 324 ~~~~lW~~~~~~~--------~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
+++|||+++.+.. .++.... +|++|.+|++++|+++.+|+||.+||+|++||+||||
T Consensus 296 ~~~FlWv~r~~~~~~~~~~~~~~~~~~~-lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH 360 (470)
T PLN03015 296 GQRFVWVLRRPASYLGASSSDDDQVSAS-LPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSH 360 (470)
T ss_pred CCcEEEEEecCccccccccccccchhhc-CChHHHHhhccCceEEEecCCHHHHhccCccCeEEec
Confidence 9999999985321 1112223 9999999999999998899999999999999999999
No 8
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=5.1e-53 Score=391.60 Aligned_cols=332 Identities=26% Similarity=0.418 Sum_probs=245.6
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCC
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENI 98 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (381)
.+.||+++|++++||++||++||+.|+.||+.||+++++.+..++.+. ...+....++++.+|.+ +++|++.+.+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~---~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHV---DGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCc---CCCCCccccc
Confidence 367999999999999999999999999999999999998876655432 10001112455555432 3777765443
Q ss_pred CCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhcCC
Q 046582 99 DMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSKVH 178 (381)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~ 178 (381)
..... .....+..+.+.+.+.+++++++ .++||||+| ++.|+..+|+++|||.+.|++++++.+++++. +.
T Consensus 79 ~~~~~-~~~~~~~~a~~~~~~~~~~~l~~--~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~---- 149 (453)
T PLN02764 79 SEIPV-TSADLLMSAMDLTRDQVEVVVRA--VEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG---- 149 (453)
T ss_pred ccCCh-hHHHHHHHHHHHhHHHHHHHHHh--CCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----
Confidence 32221 22334555556677889999987 467999999 48899999999999999999999987766542 10
Q ss_pred CCCCCCCCccccCCCCCC-CCcccCcCCCCCCC--CC----cHHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHccC
Q 046582 179 ENVASDSEYFNIPGLPDH-IGFTRVQIPIPTHK--RD----DKKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKKGK 251 (381)
Q Consensus 179 ~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~~~ 251 (381)
... ...+||+|.. +.++..+++ .+.. +. ....++.++.....+++++++|||++||++++++++...
T Consensus 150 ~~~-----~~~~pglp~~~v~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~ 223 (453)
T PLN02764 150 GEL-----GVPPPGYPSSKVLLRKQDAY-TMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHC 223 (453)
T ss_pred ccC-----CCCCCCCCCCcccCcHhhCc-chhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhc
Confidence 001 1124777631 124556666 4422 11 123444444345677889999999999999999997754
Q ss_pred CCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEE
Q 046582 252 QGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVT 331 (381)
Q Consensus 252 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~ 331 (381)
++++++|||+++... . . ...+.+|.+|||+|+++|||||||||+..++.+|+.+++.+|+.++++|+|++
T Consensus 224 ~~~v~~VGPL~~~~~-~------~---~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 224 RKKVLLTGPVFPEPD-K------T---RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred CCcEEEeccCccCcc-c------c---ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 568999999975421 0 0 01346899999999999999999999999999999999999999999999999
Q ss_pred eCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 332 RVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 332 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
+.....++.... +|++|++|++++|+++.+|+||.+||+|++|++||||
T Consensus 294 r~~~~~~~~~~~-lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH 342 (453)
T PLN02764 294 KPPRGSSTIQEA-LPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSH 342 (453)
T ss_pred eCCCCCcchhhh-CCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEec
Confidence 964321111122 9999999999999999999999999999999999999
No 9
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=7.8e-53 Score=391.84 Aligned_cols=342 Identities=25% Similarity=0.418 Sum_probs=241.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEE--eCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHG--AIVTIV--TTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGC 95 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rG--h~Vt~~--t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 95 (381)
+.||+++|+|++||++||++||+.|+.|| +.||+. ++..+...+.+.........++++++.+|++. ..+++.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT---PYSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC---CCCCcc
Confidence 45999999999999999999999999998 566664 44433322222111111111368999887542 111211
Q ss_pred CCCCCCCChhHHHHHHHHHHhcHHHHHHHHhhc--CCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhh
Q 046582 96 ENIDMLPSIDLASKFFNSLSMLQLPFENLFKEQ--TPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLR 173 (381)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~ 173 (381)
.. . ......+......+...+++++++. +.+++|||+|.|++|+..+|+++|||.+.|++++++.++.+++++
T Consensus 80 ~~--~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 80 TS--R---HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred cc--c---cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 11 0 0111223333344555566666643 135699999999999999999999999999999998888887765
Q ss_pred hhcCCCCCCC-C-CCccccCCCCCCCCcccCcCCCCCCCCCc--HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHc
Q 046582 174 DSKVHENVAS-D-SEYFNIPGLPDHIGFTRVQIPIPTHKRDD--KKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKK 249 (381)
Q Consensus 174 ~~~~~~~~~~-~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~ 249 (381)
.......... + ..+..+||+|. ++..|++ +++.... ....+.+......+++++++|||++||++++++++.
T Consensus 155 ~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~ 230 (451)
T PLN03004 155 TIDETTPGKNLKDIPTVHIPGVPP---MKGSDMP-KAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITE 230 (451)
T ss_pred hccccccccccccCCeecCCCCCC---CChHHCc-hhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHh
Confidence 3211000000 1 12356888875 7888998 7664322 123334444456778899999999999999999976
Q ss_pred cCC-CceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEE
Q 046582 250 GKQ-GKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFI 328 (381)
Q Consensus 250 ~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~l 328 (381)
..+ +++++|||+++..... . .. . ..+.+|.+|||+++++|||||||||+..++.+|+++|+.||+.++++||
T Consensus 231 ~~~~~~v~~vGPl~~~~~~~-~---~~--~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~Fl 303 (451)
T PLN03004 231 ELCFRNIYPIGPLIVNGRIE-D---RN--D-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFL 303 (451)
T ss_pred cCCCCCEEEEeeeccCcccc-c---cc--c-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 532 5899999997532100 0 00 0 1245799999999989999999999999999999999999999999999
Q ss_pred EEEeCCCch----hhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 329 WVTRVGSKL----EELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 329 W~~~~~~~~----~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
|+++.+... .+...+ +|++|++|++++|+++.+|+||.+||+|++||+||||
T Consensus 304 W~~r~~~~~~~~~~~~~~~-lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH 359 (451)
T PLN03004 304 WVVRNPPELEKTELDLKSL-LPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTH 359 (451)
T ss_pred EEEcCCccccccccchhhh-CChHHHHhccCCcEEEEeeCCHHHHhCCCccceEecc
Confidence 999954210 011223 8999999999999999899999999999999999999
No 10
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.5e-53 Score=393.01 Aligned_cols=332 Identities=26% Similarity=0.427 Sum_probs=244.5
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCC
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENI 98 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (381)
+++||+++|+|++||++||++||+.|++||++||++++..+..++++... ...+++++.++++.. +++|++.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~-dGLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPV-DGLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCc-CCCCCccccc
Confidence 46899999999999999999999999999999999999877665543210 112478877765532 4777664332
Q ss_pred CCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhcCC
Q 046582 99 DMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSKVH 178 (381)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~ 178 (381)
..... .....+......+.+.++++++. .++||||+|. ++|+..+|+++|||.+.|+++++..++.+++...
T Consensus 78 ~~l~~-~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~---- 149 (446)
T PLN00414 78 SDLPN-STKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA---- 149 (446)
T ss_pred ccchh-hHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh----
Confidence 21111 11223445556677788888876 5789999995 8899999999999999999999987776654211
Q ss_pred CCCCCCCCccccCCCCCC-CCcccCc--CCCCCCCCCcHHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHccCCCce
Q 046582 179 ENVASDSEYFNIPGLPDH-IGFTRVQ--IPIPTHKRDDKKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKKGKQGKV 255 (381)
Q Consensus 179 ~~~~~~~~~~~~p~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~~~~~~v 255 (381)
..+ ..+|++|.. +.++..+ ++ .++.. ....+.+......+++++++|||++||+.++++++...++++
T Consensus 150 -~~~-----~~~pg~p~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v 220 (446)
T PLN00414 150 -ELG-----FPPPDYPLSKVALRGHDANVC-SLFAN--SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKV 220 (446)
T ss_pred -hcC-----CCCCCCCCCcCcCchhhcccc-hhhcc--cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCe
Confidence 001 124666531 1122222 23 33322 112333444456778999999999999999999987655689
Q ss_pred EEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEEeCCC
Q 046582 256 WCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVTRVGS 335 (381)
Q Consensus 256 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~~~~~ 335 (381)
++|||+.+..... .. ...+.+|.+|||+|+++|||||||||+..++.+|+.+++.+|+.++++|||+++.+.
T Consensus 221 ~~VGPl~~~~~~~-----~~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~ 292 (446)
T PLN00414 221 LLTGPMLPEPQNK-----SG---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK 292 (446)
T ss_pred EEEcccCCCcccc-----cC---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 9999997542110 00 113467999999999999999999999999999999999999999999999998743
Q ss_pred chhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 336 KLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 336 ~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
..++.... +|++|+++++++|+++.+|+||.+||+|++|++||||
T Consensus 293 ~~~~~~~~-lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH 337 (446)
T PLN00414 293 GSSTVQEA-LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNH 337 (446)
T ss_pred Ccccchhh-CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEec
Confidence 22111223 9999999999999999899999999999999999999
No 11
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.1e-52 Score=390.52 Aligned_cols=336 Identities=26% Similarity=0.442 Sum_probs=240.6
Q ss_pred ccccCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCC
Q 046582 14 MISEASQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPE 93 (381)
Q Consensus 14 m~~~~~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 93 (381)
|+....+.||+++|++++||++||++||+.|+.||+.||++++..+... .. ....++++..+|+ ++|+
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip~-----glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIPE-----SLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCCC-----CCCc
Confidence 4444456799999999999999999999999999999999998876421 10 0112588888763 5665
Q ss_pred C-CCCCCCCCChhHHHHHHHHHHhcHHHHHHHHhhc----CCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHH
Q 046582 94 G-CENIDMLPSIDLASKFFNSLSMLQLPFENLFKEQ----TPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLC 168 (381)
Q Consensus 94 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~ 168 (381)
+ .+.. . ....+......+.+.+++++++. ..+++|||+|.|+.|+..+|+++|||.+.|++++++.++.
T Consensus 69 ~~~~~~---~---~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~ 142 (451)
T PLN02410 69 SDFKNL---G---PIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVC 142 (451)
T ss_pred cccccc---C---HHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHH
Confidence 3 2211 1 11111112223444455554432 2467999999999999999999999999999999988777
Q ss_pred HHHhhhhcCC---CCCCC--CCCccccCCCCCCCCcccCcCCCCCCCCC--cHHHHHHHHHHhhhcCcEEEeccHHHhhH
Q 046582 169 MNLLRDSKVH---ENVAS--DSEYFNIPGLPDHIGFTRVQIPIPTHKRD--DKKELREKIWAAEKKTYGAIINTFEEIES 241 (381)
Q Consensus 169 ~~~~~~~~~~---~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ns~~~le~ 241 (381)
+++++..... ..... .+....+|+++. ++..+++ .+.... .+...+.... ...+++++++|||++||+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp-~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~ 217 (451)
T PLN02410 143 RSVFDKLYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFP-VSHWASLESIMELYRNTV-DKRTASSVIINTASCLES 217 (451)
T ss_pred HHHHHHHHhccCCCCccccccCccccCCCCCC---CChHHCc-chhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhH
Confidence 7665332110 01111 112345888874 6777887 544211 1222222222 346789999999999999
Q ss_pred HHHHHHHccCCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHh
Q 046582 242 AFVEGCKKGKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLE 321 (381)
Q Consensus 242 ~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~ 321 (381)
++++++++..++++++|||+++..... . .......+|.+|||+++++|||||||||+..++.+|+++++.||+
T Consensus 218 ~~~~~l~~~~~~~v~~vGpl~~~~~~~------~-~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe 290 (451)
T PLN02410 218 SSLSRLQQQLQIPVYPIGPLHLVASAP------T-SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLD 290 (451)
T ss_pred HHHHHHHhccCCCEEEecccccccCCC------c-cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHH
Confidence 999999876667899999997642111 0 001234579999999999999999999999999999999999999
Q ss_pred hCCCCEEEEEeCCCc-hhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 322 ASKKPFIWVTRVGSK-LEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 322 ~~~~~~lW~~~~~~~-~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
.++++|||+++.+.. .++.... +|++|++|++++++++ +|+||.+||+|++|++||||
T Consensus 291 ~s~~~FlWv~r~~~~~~~~~~~~-lp~~f~er~~~~g~v~-~w~PQ~~iL~h~~v~~fvtH 349 (451)
T PLN02410 291 SSNQQFLWVIRPGSVRGSEWIES-LPKEFSKIISGRGYIV-KWAPQKEVLSHPAVGGFWSH 349 (451)
T ss_pred hcCCCeEEEEccCcccccchhhc-CChhHHHhccCCeEEE-ccCCHHHHhCCCccCeeeec
Confidence 999999999995321 1111112 8999999999888888 89999999999999999999
No 12
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.2e-51 Score=386.71 Aligned_cols=346 Identities=27% Similarity=0.451 Sum_probs=245.7
Q ss_pred ccccCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHH---Hhh-hcCC-CCeeEEEecCCCcc
Q 046582 14 MISEASQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVL---ARA-TQSG-LQIRLTEIQFPWKE 88 (381)
Q Consensus 14 m~~~~~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~---~~~-~~~~-~~i~~~~~~~~~~~ 88 (381)
|..+..++||+++|+|++||++||+.||+.|+.||..||+++++.+..++.+.. ... ...+ ..++|..++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 556667789999999999999999999999999999999999998776554211 000 0000 124444333
Q ss_pred cCCCCCCCCCCCCCChhHHHHHHHHHH-hcHHHHHHHHhhc---CCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHH
Q 046582 89 AGLPEGCENIDMLPSIDLASKFFNSLS-MLQLPFENLFKEQ---TPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCF 164 (381)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~---~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~ 164 (381)
+++|++.+.. . +. ..+..... .+.+.++++++.. ..+++|||+|.|+.|+..+|+++|||.+.|++++++
T Consensus 76 dglp~~~~~~---~--~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~ 149 (480)
T PLN02555 76 DGWAEDDPRR---Q--DL-DLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCA 149 (480)
T ss_pred CCCCCCcccc---c--CH-HHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHH
Confidence 3566554321 1 11 12333332 4556666666542 134599999999999999999999999999999998
Q ss_pred HHHHHHHhhhhcC-CCCCCCCCCccccCCCCCCCCcccCcCCCCCCCCC-cH---HHHHHHHHHhhhcCcEEEeccHHHh
Q 046582 165 CLLCMNLLRDSKV-HENVASDSEYFNIPGLPDHIGFTRVQIPIPTHKRD-DK---KELREKIWAAEKKTYGAIINTFEEI 239 (381)
Q Consensus 165 ~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~ns~~~l 239 (381)
.++.+++++.... ......++.+..+||+|. ++.+++| +++... .. ...+.+......+++++++|||++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eL 225 (480)
T PLN02555 150 CFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIP-SFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQEL 225 (480)
T ss_pred HHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCc-ccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHH
Confidence 8888777643211 111111223456899985 7888999 776432 11 1222333345667899999999999
Q ss_pred hHHHHHHHHccCCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHH
Q 046582 240 ESAFVEGCKKGKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLG 319 (381)
Q Consensus 240 e~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~a 319 (381)
|+++++++++.. +++.|||+++....... ......+..+++|.+|||+++++|||||||||+..++.+++.+++.+
T Consensus 226 E~~~~~~l~~~~--~v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~ 301 (480)
T PLN02555 226 EKEIIDYMSKLC--PIKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYG 301 (480)
T ss_pred hHHHHHHHhhCC--CEEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHH
Confidence 999999987643 49999999754211100 00111123457899999999988999999999999999999999999
Q ss_pred HhhCCCCEEEEEeCCCch--hhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 320 LEASKKPFIWVTRVGSKL--EELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 320 l~~~~~~~lW~~~~~~~~--~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
|+.++++|||+++..... .+... +|++|.++++++++++ +|+||.+||+||+|++||||
T Consensus 302 l~~~~~~flW~~~~~~~~~~~~~~~--lp~~~~~~~~~~g~v~-~W~PQ~~iL~H~~v~~FvtH 362 (480)
T PLN02555 302 VLNSGVSFLWVMRPPHKDSGVEPHV--LPEEFLEKAGDKGKIV-QWCPQEKVLAHPSVACFVTH 362 (480)
T ss_pred HHhcCCeEEEEEecCcccccchhhc--CChhhhhhcCCceEEE-ecCCHHHHhCCCccCeEEec
Confidence 999999999999853211 01112 8999999887777767 89999999999999999999
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.2e-51 Score=386.46 Aligned_cols=337 Identities=26% Similarity=0.413 Sum_probs=246.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC----CeEEEEeCCcch----hhHHHHHHhhhcCCCCeeEEEecCCCcccCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHG----AIVTIVTTPVNA----ARFKTVLARATQSGLQIRLTEIQFPWKEAGL 91 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rG----h~Vt~~t~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 91 (381)
+.||+++|++++||++||++||+.|+.|| +.||++++..+. .++.....+....+.+++++.+|++. .
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----~ 78 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE----P 78 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----C
Confidence 57999999999999999999999999997 799999876543 23333322111112258898887542 2
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHH
Q 046582 92 PEGCENIDMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNL 171 (381)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~ 171 (381)
+++.+. ....+......+.+.+++++++...+++|||+|.|++|+..+|+++|||.+.|+++++..++.+++
T Consensus 79 p~~~e~--------~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 150 (480)
T PLN00164 79 PTDAAG--------VEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLR 150 (480)
T ss_pred CCcccc--------HHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhh
Confidence 332221 111222233456677888877643467999999999999999999999999999999988888877
Q ss_pred hhhhcCCCC--CCCCCCccccCCCCCCCCcccCcCCCCCCCCCc--HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHH
Q 046582 172 LRDSKVHEN--VASDSEYFNIPGLPDHIGFTRVQIPIPTHKRDD--KKELREKIWAAEKKTYGAIINTFEEIESAFVEGC 247 (381)
Q Consensus 172 ~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~ 247 (381)
++....... ......+..+||++. ++..++| .++.... ....+........+++++++|||++||+++++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 226 (480)
T PLN00164 151 LPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLP-APVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAI 226 (480)
T ss_pred hhhhcccccCcccccCcceecCCCCC---CChHHCC-chhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHH
Confidence 654211100 011012335888875 7888998 6554321 1122333334567889999999999999999999
Q ss_pred HccC------CCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHh
Q 046582 248 KKGK------QGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLE 321 (381)
Q Consensus 248 ~~~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~ 321 (381)
+... .++++.|||+++..... . ....+++|.+|||+++++|||||||||+..++.+|+++++.||+
T Consensus 227 ~~~~~~~~~~~~~v~~vGPl~~~~~~~-------~-~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~ 298 (480)
T PLN00164 227 ADGRCTPGRPAPTVYPIGPVISLAFTP-------P-AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLE 298 (480)
T ss_pred HhccccccCCCCceEEeCCCccccccC-------C-CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 7642 15799999997532110 0 11245789999999999999999999999999999999999999
Q ss_pred hCCCCEEEEEeCCCch-------hhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 322 ASKKPFIWVTRVGSKL-------EELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 322 ~~~~~~lW~~~~~~~~-------~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
.++++|||+++.+... .+.... +|++|.++++++|+++.+|+||.+||+|++|++||||
T Consensus 299 ~s~~~flWv~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH 364 (480)
T PLN00164 299 RSGHRFLWVLRGPPAAGSRHPTDADLDEL-LPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTH 364 (480)
T ss_pred HcCCCEEEEEcCCcccccccccccchhhh-CChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEee
Confidence 9999999999854210 011223 8999999999999999999999999999999999999
No 14
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.6e-51 Score=381.92 Aligned_cols=340 Identities=23% Similarity=0.396 Sum_probs=241.7
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCcch-hhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCC
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHG--AIVTIVTTPVNA-ARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGC 95 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rG--h~Vt~~t~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 95 (381)
.+.|++++|+|++||++||++||+.|+.|| ..||++++..+. ..+...........++++++.+|+... .++..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTLG 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCccc
Confidence 457999999999999999999999999998 999999888765 333332221111113689999884211 11100
Q ss_pred CCCCCCCChhHHHHHHHHHHh----cHHHHHHHHhhc--C-CCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHH
Q 046582 96 ENIDMLPSIDLASKFFNSLSM----LQLPFENLFKEQ--T-PKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLC 168 (381)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~----~~~~l~~ll~~~--~-~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~ 168 (381)
. .. +....+...... +.+.+++++++. + .+.+|||+|.|++|+..+|+++|||.+.|+++++..++.
T Consensus 79 -~---~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~ 152 (468)
T PLN02207 79 -G---TQ--SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAM 152 (468)
T ss_pred -c---cc--CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 0 00 111222233323 355667776542 1 235899999999999999999999999999999988877
Q ss_pred HHHhhhhcC-CCC--CCCCCCccccCCC-CCCCCcccCcCCCCCCCCCc-HHHHHHHHHHhhhcCcEEEeccHHHhhHHH
Q 046582 169 MNLLRDSKV-HEN--VASDSEYFNIPGL-PDHIGFTRVQIPIPTHKRDD-KKELREKIWAAEKKTYGAIINTFEEIESAF 243 (381)
Q Consensus 169 ~~~~~~~~~-~~~--~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ns~~~le~~~ 243 (381)
+++++.... ... ++..+....+||+ +. ++..++| .++.... +.. +.+......+++++++|||++||.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp-~~~~~~~~~~~-~~~~~~~~~~~~~vlvNtf~~LE~~~ 227 (468)
T PLN02207 153 MQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLP-SALFVEDGYDA-YVKLAILFTKANGILVNSSFDIEPYS 227 (468)
T ss_pred HHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCc-chhcCCccHHH-HHHHHHhcccCCEEEEEchHHHhHHH
Confidence 776643211 000 1111234568998 43 7888998 7664322 332 23333456788999999999999999
Q ss_pred HHHHHcc-CCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhh
Q 046582 244 VEGCKKG-KQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEA 322 (381)
Q Consensus 244 ~~~~~~~-~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~ 322 (381)
+++++.. ..++++.|||+++...... +......+++|.+|||+++++|||||||||+..++.+++++++.||+.
T Consensus 228 ~~~~~~~~~~p~v~~VGPl~~~~~~~~-----~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~ 302 (468)
T PLN02207 228 VNHFLDEQNYPSVYAVGPIFDLKAQPH-----PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLEL 302 (468)
T ss_pred HHHHHhccCCCcEEEecCCcccccCCC-----CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHH
Confidence 9888541 2368999999986422110 000001236899999999988999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 323 SKKPFIWVTRVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 323 ~~~~~lW~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
++++|||+++++... ..++ +|++|+++++++++++ +|+||.+||+||+||+||||
T Consensus 303 ~~~~flW~~r~~~~~--~~~~-lp~~f~er~~~~g~i~-~W~PQ~~IL~H~~vg~FvTH 357 (468)
T PLN02207 303 CQYRFLWSLRTEEVT--NDDL-LPEGFLDRVSGRGMIC-GWSPQVEILAHKAVGGFVSH 357 (468)
T ss_pred CCCcEEEEEeCCCcc--cccc-CCHHHHhhcCCCeEEE-EeCCHHHHhcccccceeeec
Confidence 999999999963211 0123 8999999998888777 99999999999999999999
No 15
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.6e-51 Score=380.51 Aligned_cols=326 Identities=24% Similarity=0.381 Sum_probs=236.9
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCC-CC
Q 046582 18 ASQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEG-CE 96 (381)
Q Consensus 18 ~~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~ 96 (381)
+++.|++++|+|++||++||++||+.|+.+|+.||+++++.+..++... ..++++++.+++ ++|++ .+
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipd-----glp~~~~~ 71 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISD-----GYDQGGFS 71 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCC-----CCCCcccc
Confidence 3457999999999999999999999999999999999998776544221 113589988863 56653 22
Q ss_pred CCCCCCChhHHHHHHHHH-HhcHHHHHHHHhhc--CCC-CcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHh
Q 046582 97 NIDMLPSIDLASKFFNSL-SMLQLPFENLFKEQ--TPK-PCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLL 172 (381)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~--~~~-~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~ 172 (381)
... . ...+.... ..+.+.+++++++. +.+ .+|||+|.|++|+..+|+++|||.+.|++++++.+..+++.
T Consensus 72 ~~~-----~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~ 145 (449)
T PLN02173 72 SAG-----S-VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS 145 (449)
T ss_pred ccc-----C-HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH
Confidence 211 1 11233333 25566777777653 123 49999999999999999999999999999887776555432
Q ss_pred hhhcCCCCCCCCCCccccCCCCCCCCcccCcCCCCCCCCC-c---HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHH
Q 046582 173 RDSKVHENVASDSEYFNIPGLPDHIGFTRVQIPIPTHKRD-D---KKELREKIWAAEKKTYGAIINTFEEIESAFVEGCK 248 (381)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~ 248 (381)
.. . +......+|++|. ++..+++ .++... . ..+.+.+......+++++++|||++||++.+++++
T Consensus 146 ~~---~----~~~~~~~~pg~p~---l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 214 (449)
T PLN02173 146 YI---N----NGSLTLPIKDLPL---LELQDLP-TFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLS 214 (449)
T ss_pred Hh---c----cCCccCCCCCCCC---CChhhCC-hhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHH
Confidence 11 0 0112345788875 6788898 766431 1 22223333445678899999999999999999987
Q ss_pred ccCCCceEEeCcCcCCCc--cch-hhhhcCCCCC--CCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhC
Q 046582 249 KGKQGKVWCIGPVSLCNK--ESI-DKVERGNKAA--IDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEAS 323 (381)
Q Consensus 249 ~~~~~~v~~vGpl~~~~~--~~~-~~~~~~~~~~--~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~ 323 (381)
.. .++++|||+++... ... .........+ ..+++|.+|||+++++|||||||||+..++.+++++++.+| +
T Consensus 215 ~~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s 290 (449)
T PLN02173 215 KV--CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--S 290 (449)
T ss_pred hc--CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--c
Confidence 64 47999999975311 000 0000000011 12456999999999999999999999999999999999999 7
Q ss_pred CCCEEEEEeCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 324 KKPFIWVTRVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 324 ~~~~lW~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
+++|||+++.+.. .. +|++|.+++.++|+++.+|+||.+||+|++|++||||
T Consensus 291 ~~~flWvvr~~~~----~~--lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtH 342 (449)
T PLN02173 291 NFSYLWVVRASEE----SK--LPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTH 342 (449)
T ss_pred CCCEEEEEeccch----hc--ccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEec
Confidence 8899999986421 12 8999999986676666699999999999999999999
No 16
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.9e-51 Score=380.86 Aligned_cols=334 Identities=22% Similarity=0.407 Sum_probs=237.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQ-HGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENI 98 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~-rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (381)
+.||+++|+|++||++||++||+.|+. +|+.||++++..+.. +...... ...++++++.++ ++++++.+..
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~~~ 74 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVISN 74 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCccccc
Confidence 469999999999999999999999996 799999999885421 1111111 111258888875 3566553211
Q ss_pred CCCCChhHHHHHHHHHHhcHHHHHHHHhhc---CCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhh
Q 046582 99 DMLPSIDLASKFFNSLSMLQLPFENLFKEQ---TPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDS 175 (381)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~ 175 (381)
. . .....+......+.+.+++++++. +.+.+|||+|.+++|+..+|+++|||.+.|++++++.++.+++++..
T Consensus 75 ~--~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 75 T--D--DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred c--c--cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 1 0 122223333345556666666542 13569999999999999999999999999999999888877765421
Q ss_pred cCCCCCCCCCCccccCCCCCCCCcccCcCCCCCCCCC---c-HHHHHHHHHHhhhc--CcEEEeccHHHhhHHHHHHHHc
Q 046582 176 KVHENVASDSEYFNIPGLPDHIGFTRVQIPIPTHKRD---D-KKELREKIWAAEKK--TYGAIINTFEEIESAFVEGCKK 249 (381)
Q Consensus 176 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~--~~~~~~ns~~~le~~~~~~~~~ 249 (381)
......+||+|. ++.+++| +++... . ....+.+......+ ++++++|||++||++.+++++.
T Consensus 151 --------~~~~~~iPglp~---l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 151 --------NNSVFEFPNLPS---LEIRDLP-SFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred --------CCCeeecCCCCC---CchHHCc-hhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 112346888875 7788999 776432 1 12333333333332 4699999999999999998865
Q ss_pred cCCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEE
Q 046582 250 GKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIW 329 (381)
Q Consensus 250 ~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW 329 (381)
.+++.|||+++...............+..+.+|.+|||+++++|||||||||++.++.+|+++|+.||++++++|||
T Consensus 219 ---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 295 (455)
T PLN02152 219 ---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLW 295 (455)
T ss_pred ---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 26999999975321000000000000123468999999999889999999999999999999999999999999999
Q ss_pred EEeCCCch------hhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 330 VTRVGSKL------EELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 330 ~~~~~~~~------~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
+++++... .+.....+|++|.++++++++++ +|+||.+||+|++||+||||
T Consensus 296 v~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~-~W~PQ~~iL~h~~vg~fvtH 352 (455)
T PLN02152 296 VITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIV-SWCSQIEVLRHRAVGCFVTH 352 (455)
T ss_pred EEecCcccccccccccccccccchhHHHhccCCeEEE-eeCCHHHHhCCcccceEEee
Confidence 99863211 00001015789999988888777 99999999999999999999
No 17
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.5e-50 Score=377.68 Aligned_cols=330 Identities=25% Similarity=0.416 Sum_probs=240.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENID 99 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
+.||+++|+|++||++||++||+.|+.+|++||++|+..+..++.+... ...+++++.+|+ +++++.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~-----g~~~~~---- 72 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISD-----GQDDDP---- 72 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCC-----CCCCCc----
Confidence 4699999999999999999999999999999999999987765544311 112588888764 333211
Q ss_pred CCCChhHHHHHHHHHH-hcHHHHHHHHhhcC--CCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhc
Q 046582 100 MLPSIDLASKFFNSLS-MLQLPFENLFKEQT--PKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSK 176 (381)
Q Consensus 100 ~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~--~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~ 176 (381)
.. +. ..+...+. .+.+.+++++++.. .+++|||+|.++.|+..+|+++|||.+.|+++++..++.+++++...
T Consensus 73 --~~-~~-~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~ 148 (448)
T PLN02562 73 --PR-DF-FSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELV 148 (448)
T ss_pred --cc-cH-HHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHh
Confidence 11 11 23344444 56777888877632 24589999999999999999999999999999988777766654321
Q ss_pred CC---CCCCCCC--Cc-cccCCCCCCCCcccCcCCCCCCCCC--c--HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHH
Q 046582 177 VH---ENVASDS--EY-FNIPGLPDHIGFTRVQIPIPTHKRD--D--KKELREKIWAAEKKTYGAIINTFEEIESAFVEG 246 (381)
Q Consensus 177 ~~---~~~~~~~--~~-~~~p~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~ 246 (381)
.. ...+.+. .+ ..+|++|. ++..+++ .++... . ....+.+......+++++++|||++||...++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 224 (448)
T PLN02562 149 RTGLISETGCPRQLEKICVLPEQPL---LSTEDLP-WLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKN 224 (448)
T ss_pred hccccccccccccccccccCCCCCC---CChhhCc-chhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHH
Confidence 11 1111111 11 25788875 6778888 765321 1 123333444456678899999999999988887
Q ss_pred HHcc----CCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCc-CCChhhHHHHHHHHh
Q 046582 247 CKKG----KQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSIC-NLKSSQLIELGLGLE 321 (381)
Q Consensus 247 ~~~~----~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~-~~~~~~~~~l~~al~ 321 (381)
++.. ..++++.|||+++..... .+.......+.+|.+|||+++++|||||||||+. .++.+++++++.||+
T Consensus 225 ~~~~~~~~~~~~v~~iGpl~~~~~~~----~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~ 300 (448)
T PLN02562 225 HQASYNNGQNPQILQIGPLHNQEATT----ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALE 300 (448)
T ss_pred HHhhhccccCCCEEEecCcccccccc----cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHH
Confidence 6531 236899999998643210 0011111234678899999998899999999987 589999999999999
Q ss_pred hCCCCEEEEEeCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 322 ASKKPFIWVTRVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 322 ~~~~~~lW~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
++|++|||+++.... .. +|++|.+++.++++++ +|+||.+||+|++|++||||
T Consensus 301 ~~g~~fiW~~~~~~~----~~--l~~~~~~~~~~~~~v~-~w~PQ~~iL~h~~v~~fvtH 353 (448)
T PLN02562 301 ASGRPFIWVLNPVWR----EG--LPPGYVERVSKQGKVV-SWAPQLEVLKHQAVGCYLTH 353 (448)
T ss_pred HCCCCEEEEEcCCch----hh--CCHHHHHHhccCEEEE-ecCCHHHHhCCCccceEEec
Confidence 999999999986421 12 8999999887777666 99999999999999999999
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.9e-50 Score=377.21 Aligned_cols=347 Identities=25% Similarity=0.414 Sum_probs=235.3
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCC---eEEEEeCCcchh-hHHHHHHhhhcCCCCeeEEEecCCCcccCCCCC
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGA---IVTIVTTPVNAA-RFKTVLARATQSGLQIRLTEIQFPWKEAGLPEG 94 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh---~Vt~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 94 (381)
++.||+++|+|++||++||++||+.|+.||. .||++++..+.. ..+..........++++++.+|++. . +.+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~-p~~ 77 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ---D-PPP 77 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC---C-Ccc
Confidence 5679999999999999999999999999984 567766543321 1122121111111359999988642 1 211
Q ss_pred CCCCCCCCChhHHHHHHHH-HHhcHHHHHHHHhhc---CC-CCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHH
Q 046582 95 CENIDMLPSIDLASKFFNS-LSMLQLPFENLFKEQ---TP-KPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCM 169 (381)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~~---~~-~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~ 169 (381)
.+....... ..+..+... .+.+.+.+++++.+. +. +++|||+|.|++|+..+|+++|||.+.|+++++..++.+
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~ 156 (475)
T PLN02167 78 MELFVKASE-AYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMM 156 (475)
T ss_pred ccccccchH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 110010000 111112211 123344455544321 12 469999999999999999999999999999999888887
Q ss_pred HHhhhhc-CCC-CC--CCCCCccccCCCCCCCCcccCcCCCCCCCCCcHHHHHHHHHHhhhcCcEEEeccHHHhhHHHHH
Q 046582 170 NLLRDSK-VHE-NV--ASDSEYFNIPGLPDHIGFTRVQIPIPTHKRDDKKELREKIWAAEKKTYGAIINTFEEIESAFVE 245 (381)
Q Consensus 170 ~~~~~~~-~~~-~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~ 245 (381)
++++... ... .. .+.+.+..+||++. .++..+++ .++........+.+......+++++++|||++||+++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~--~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 233 (475)
T PLN02167 157 KYLPERHRKTASEFDLSSGEEELPIPGFVN--SVPTKVLP-PGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFD 233 (475)
T ss_pred HHHHHhccccccccccCCCCCeeECCCCCC--CCChhhCc-hhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHH
Confidence 7665321 111 00 11112345888842 16777887 544332212223334445678899999999999999999
Q ss_pred HHHccC--CCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhC
Q 046582 246 GCKKGK--QGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEAS 323 (381)
Q Consensus 246 ~~~~~~--~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~ 323 (381)
+++... -++++.|||+++...... ...+...+.+|.+|||+++++|||||||||+..++.+++.+++.||+++
T Consensus 234 ~l~~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~ 308 (475)
T PLN02167 234 YFSRLPENYPPVYPVGPILSLKDRTS-----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELV 308 (475)
T ss_pred HHHhhcccCCeeEEeccccccccccC-----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhC
Confidence 986531 168999999986422100 0001113468999999999899999999999999999999999999999
Q ss_pred CCCEEEEEeCCCch--hhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 324 KKPFIWVTRVGSKL--EELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 324 ~~~~lW~~~~~~~~--~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
+++|||+++.+... +.... +|++|.+|++++++++ +|+||.+||+|++|++||||
T Consensus 309 ~~~flw~~~~~~~~~~~~~~~--lp~~~~er~~~rg~v~-~w~PQ~~iL~h~~vg~fvtH 365 (475)
T PLN02167 309 GCRFLWSIRTNPAEYASPYEP--LPEGFMDRVMGRGLVC-GWAPQVEILAHKAIGGFVSH 365 (475)
T ss_pred CCcEEEEEecCcccccchhhh--CChHHHHHhccCeeee-ccCCHHHHhcCcccCeEEee
Confidence 99999999864211 11123 8999999999999777 99999999999999999999
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.7e-49 Score=374.80 Aligned_cols=340 Identities=26% Similarity=0.404 Sum_probs=240.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhH---HHHHHhhhc-CCCCeeEEEecCCCcccCCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHG--AIVTIVTTPVNAARF---KTVLARATQ-SGLQIRLTEIQFPWKEAGLPE 93 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rG--h~Vt~~t~~~~~~~~---~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~ 93 (381)
|.||+++|+|++||++||++||+.|+.|| ..||+++++.+..++ .....+... ..++++++.+|++.. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 46999999999999999999999999998 889999888775422 111111100 123589988875421 11
Q ss_pred CCCCCCCCCChhHHHHHHHHHHhcHHHHHHHHhhc---C-CCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHH
Q 046582 94 GCENIDMLPSIDLASKFFNSLSMLQLPFENLFKEQ---T-PKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCM 169 (381)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~---~-~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~ 169 (381)
. . .......+....+.+.+.+++++.+. . .+.+|||+|.|+.|+..+|+++|||.+.|++++++.++.+
T Consensus 78 ~-~------~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 78 T-E------DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred c-c------chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 0 0 00111111122234455666665431 1 2348999999999999999999999999999999998888
Q ss_pred HHhhhhcCC---C--CCCCCCCccccCCCCCCCCcccCcCCCCCCCCCcHHHHHHHHHHhhhcCcEEEeccHHHhhHHHH
Q 046582 170 NLLRDSKVH---E--NVASDSEYFNIPGLPDHIGFTRVQIPIPTHKRDDKKELREKIWAAEKKTYGAIINTFEEIESAFV 244 (381)
Q Consensus 170 ~~~~~~~~~---~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~ 244 (381)
++++..... . .+.++..+..+|+++. +++..++| .++....+...+.+......+++++++|||++||+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~--pl~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~ 227 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTR--PYPVKCLP-SVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQAL 227 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCC--CCCHHHCC-CcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHH
Confidence 877542111 1 1111112345888731 16778888 65543232333444445567899999999999999999
Q ss_pred HHHHcc--CCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhh
Q 046582 245 EGCKKG--KQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEA 322 (381)
Q Consensus 245 ~~~~~~--~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~ 322 (381)
.++++. ..++++.|||++........ ....++.+|.+|||+++++|||||||||+..++.+++++++.||++
T Consensus 228 ~~l~~~~~~~~~v~~vGpl~~~~~~~~~------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~ 301 (481)
T PLN02554 228 KFFSGSSGDLPPVYPVGPVLHLENSGDD------SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALER 301 (481)
T ss_pred HHHHhcccCCCCEEEeCCCccccccccc------cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHH
Confidence 988753 22689999999432211100 0012567899999999888999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCch---------hhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 323 SKKPFIWVTRVGSKL---------EELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 323 ~~~~~lW~~~~~~~~---------~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
++++|||+++.+... .+.... +|++|.+|++++++++ +|+||.+||+||+|++||||
T Consensus 302 ~~~~flW~~~~~~~~~~~~~~~~~~~~~~~-lp~~~~~r~~~~g~v~-~W~PQ~~iL~H~~v~~FvtH 367 (481)
T PLN02554 302 SGHRFLWSLRRASPNIMKEPPGEFTNLEEI-LPEGFLDRTKDIGKVI-GWAPQVAVLAKPAIGGFVTH 367 (481)
T ss_pred cCCCeEEEEcCCcccccccccccccchhhh-CChHHHHHhccCceEE-eeCCHHHHhCCcccCccccc
Confidence 999999999863210 011122 7999999998888777 99999999999999999999
No 20
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=8.6e-49 Score=367.67 Aligned_cols=331 Identities=25% Similarity=0.394 Sum_probs=236.1
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHH--HHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCC
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARL--LAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCE 96 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~--L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 96 (381)
++.||+++|+|++||++||++||++ |++||++||+++++.+..++++.. .....+++..++ +++|++..
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~-----~glp~~~~ 77 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFS-----DGLPKDDP 77 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECC-----CCCCCCcc
Confidence 4679999999999999999999999 569999999999998766543211 011235554443 35665432
Q ss_pred CCCCCCChhHHHHHHHHH-HhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhh
Q 046582 97 NIDMLPSIDLASKFFNSL-SMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDS 175 (381)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~ 175 (381)
. ... .+...+ +.+.+.+++++++ .++||||+|.++.|+..+|+++|||.+.|++.++..+..+++++..
T Consensus 78 ~-------~~~-~~~~~~~~~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~ 147 (456)
T PLN02210 78 R-------APE-TLLKSLNKVGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK 147 (456)
T ss_pred c-------CHH-HHHHHHHHhhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc
Confidence 1 111 223333 3556678888877 5799999999999999999999999999999988877776655321
Q ss_pred -cCCCCCCCCCCccccCCCCCCCCcccCcCCCCCCCCC-c--HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHccC
Q 046582 176 -KVHENVASDSEYFNIPGLPDHIGFTRVQIPIPTHKRD-D--KKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKKGK 251 (381)
Q Consensus 176 -~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~~~ 251 (381)
.........+....+|+++. ++..+++ .++... + +.....+......+++++++|||+++|++.++++++.
T Consensus 148 ~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~- 222 (456)
T PLN02210 148 TNSFPDLEDLNQTVELPALPL---LEVRDLP-SFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL- 222 (456)
T ss_pred cCCCCcccccCCeeeCCCCCC---CChhhCC-hhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc-
Confidence 11111111112345888874 6778888 655432 1 2233334444456788999999999999999998773
Q ss_pred CCceEEeCcCcCCCc--cchhhhhcCC--CCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCE
Q 046582 252 QGKVWCIGPVSLCNK--ESIDKVERGN--KAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPF 327 (381)
Q Consensus 252 ~~~v~~vGpl~~~~~--~~~~~~~~~~--~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~ 327 (381)
+++++|||+++... ........+. ..+..+.+|.+|||+++++|||||||||+...+.+++++++.||+.++++|
T Consensus 223 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~f 301 (456)
T PLN02210 223 -KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPF 301 (456)
T ss_pred -CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 58999999975210 0000000000 012346789999999998899999999999999999999999999999999
Q ss_pred EEEEeCCCchhhhhhccchhhHHHHhC-CCceEecCcchhHHhhcCCCceeeccC
Q 046582 328 IWVTRVGSKLEELEKWLVEENFEERIK-GTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 328 lW~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
||+++.+... . .+.+|.+++. ++|+++ +|+||.+||+|++|++||||
T Consensus 302 lw~~~~~~~~----~--~~~~~~~~~~~~~g~v~-~w~PQ~~iL~h~~vg~FitH 349 (456)
T PLN02210 302 LWVIRPKEKA----Q--NVQVLQEMVKEGQGVVL-EWSPQEKILSHMAISCFVTH 349 (456)
T ss_pred EEEEeCCccc----c--chhhHHhhccCCCeEEE-ecCCHHHHhcCcCcCeEEee
Confidence 9999864221 1 3456667663 778766 99999999999999999999
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-46 Score=355.80 Aligned_cols=331 Identities=25% Similarity=0.394 Sum_probs=235.4
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCC
Q 046582 18 ASQFHFLLLPFLAQGHLIPMIDIARLLAQH--GAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGC 95 (381)
Q Consensus 18 ~~~~~i~~~~~~~~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 95 (381)
..+.||+++|+|++||++||++||++|++| ||+||+++++.+..++++.. ...+++|+.+++ +++++.
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~-----~~p~~~ 77 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPN-----VIPSEL 77 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCC-----CCCCcc
Confidence 346899999999999999999999999999 99999999998877665531 113689988873 233332
Q ss_pred CCCCCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhh
Q 046582 96 ENIDMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDS 175 (381)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~ 175 (381)
... . +....+......+.+.+++++++...++||||+|.++.|+..+|+++|||++.++++++..++.+++++..
T Consensus 78 ~~~---~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~ 152 (459)
T PLN02448 78 VRA---A--DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLL 152 (459)
T ss_pred ccc---c--CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhh
Confidence 111 1 11222222233566677888776434789999999999999999999999999999998777776665432
Q ss_pred cCCC--CCCCC---CC-ccccCCCCCCCCcccCcCCCCCCCCCc--HHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHH
Q 046582 176 KVHE--NVASD---SE-YFNIPGLPDHIGFTRVQIPIPTHKRDD--KKELREKIWAAEKKTYGAIINTFEEIESAFVEGC 247 (381)
Q Consensus 176 ~~~~--~~~~~---~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~ 247 (381)
.... ....+ +. ...+|+++. ++..+++ .++.... ..+.+.+......++.++++|||++||+.+++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l 228 (459)
T PLN02448 153 PQNGHFPVELSESGEERVDYIPGLSS---TRLSDLP-PIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDAL 228 (459)
T ss_pred hhccCCCCccccccCCccccCCCCCC---CChHHCc-hhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHH
Confidence 1110 11110 11 124777764 6777888 6654322 1223333334456778999999999999999999
Q ss_pred HccCCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCE
Q 046582 248 KKGKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPF 327 (381)
Q Consensus 248 ~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~ 327 (381)
+..++.+++.|||+.+....... ..+. .....+.+|.+||++++++|||||||||+..++.++++++++||+.++++|
T Consensus 229 ~~~~~~~~~~iGP~~~~~~~~~~-~~~~-~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~ 306 (459)
T PLN02448 229 KSKFPFPVYPIGPSIPYMELKDN-SSSS-NNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRF 306 (459)
T ss_pred HhhcCCceEEecCcccccccCCC-cccc-ccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCE
Confidence 87666689999999753211000 0000 001123589999999988899999999999999999999999999999999
Q ss_pred EEEEeCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 328 IWVTRVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 328 lW~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
||+++.+. .++.++..++++++ +|+||.+||+|++|++||||
T Consensus 307 lw~~~~~~-----------~~~~~~~~~~~~v~-~w~pQ~~iL~h~~v~~fvtH 348 (459)
T PLN02448 307 LWVARGEA-----------SRLKEICGDMGLVV-PWCDQLKVLCHSSVGGFWTH 348 (459)
T ss_pred EEEEcCch-----------hhHhHhccCCEEEe-ccCCHHHHhccCccceEEec
Confidence 99987531 12333334455555 99999999999999999999
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=5.8e-37 Score=291.53 Aligned_cols=307 Identities=15% Similarity=0.138 Sum_probs=201.0
Q ss_pred cEEE-EEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcc--cCCCCCCCC
Q 046582 21 FHFL-LLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKE--AGLPEGCEN 97 (381)
Q Consensus 21 ~~i~-~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~ 97 (381)
.+|+ ++|.++.||+..+.+|+++|++|||+||++++...... ... ...+++.+.++..... +.+.. ...
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~-~~~------~~~~~~~i~~~~~~~~~~~~~~~-~~~ 92 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYY-ASH------LCGNITEIDASLSVEYFKKLVKS-SAV 92 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccccc-ccC------CCCCEEEEEcCCChHHHHHHHhh-hhH
Confidence 3565 55989999999999999999999999999988642110 000 1125555554321110 00000 000
Q ss_pred C---CCC-CChhH----HHHHHHHHH-hc-HHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHc-CCCeEEEecchHHHH
Q 046582 98 I---DML-PSIDL----ASKFFNSLS-ML-QLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKF-NVPRIIFHGFSCFCL 166 (381)
Q Consensus 98 ~---~~~-~~~~~----~~~~~~~~~-~~-~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l-~iP~v~~~~~~~~~~ 166 (381)
. ... ..... ...+...++ .+ .+.+.+++++...+||++|+|.+..|++.+|+++ ++|.|.+++++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 0 000 00000 011122222 22 3456777762226899999999999999999999 999988877654322
Q ss_pred HHHHHhhhhcCCCCCC-CCCCccccCCCCCCCCcccCcCCCCCCCCC-cH----------H-------HHHHHH------
Q 046582 167 LCMNLLRDSKVHENVA-SDSEYFNIPGLPDHIGFTRVQIPIPTHKRD-DK----------K-------ELREKI------ 221 (381)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~----------~-------~~~~~~------ 221 (381)
. ...++ +|..++|+|.+. ....+-| +|++|. ++ . ++.++.
T Consensus 173 ~----------~~~~gg~p~~~syvP~~~----~~~~~~M-sf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~ 237 (507)
T PHA03392 173 N----------FETMGAVSRHPVYYPNLW----RSKFGNL-NVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTP 237 (507)
T ss_pred H----------HHhhccCCCCCeeeCCcc----cCCCCCC-CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCC
Confidence 1 12234 777888999876 4556777 888883 11 0 011111
Q ss_pred --HHhhhcCcEEEeccHHHhhHHHHHHHHccCCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEE
Q 046582 222 --WAAEKKTYGAIINTFEEIESAFVEGCKKGKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVY 299 (381)
Q Consensus 222 --~~~~~~~~~~~~ns~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIy 299 (381)
.+..++...+++|+...++ +.|+ +++++..|||++..... ..++++++++||+++++ ++||
T Consensus 238 ~~~~l~~~~~l~lvns~~~~d-----~~rp-~~p~v~~vGgi~~~~~~----------~~~l~~~l~~fl~~~~~-g~V~ 300 (507)
T PHA03392 238 TIRELRNRVQLLFVNVHPVFD-----NNRP-VPPSVQYLGGLHLHKKP----------PQPLDDYLEEFLNNSTN-GVVY 300 (507)
T ss_pred CHHHHHhCCcEEEEecCcccc-----CCCC-CCCCeeeecccccCCCC----------CCCCCHHHHHHHhcCCC-cEEE
Confidence 0111234567777766665 4454 45899999999874211 12478999999998754 6999
Q ss_pred EeeCCCcC---CChhhHHHHHHHHhhCCCCEEEEEeCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCce
Q 046582 300 VCLGSICN---LKSSQLIELGLGLEASKKPFIWVTRVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVG 376 (381)
Q Consensus 300 vSfGS~~~---~~~~~~~~l~~al~~~~~~~lW~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~ 376 (381)
|||||+.. ++.+.++.+++||++++++||||+++.. .+.+ .++|+.+.+|+||.+||+||+++
T Consensus 301 vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~---------~~~~-----~p~Nv~i~~w~Pq~~lL~hp~v~ 366 (507)
T PHA03392 301 VSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV---------EAIN-----LPANVLTQKWFPQRAVLKHKNVK 366 (507)
T ss_pred EECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc---------Cccc-----CCCceEEecCCCHHHHhcCCCCC
Confidence 99999874 7888899999999999999999998642 1101 34688888999999999999999
Q ss_pred eeccC
Q 046582 377 GFLTH 381 (381)
Q Consensus 377 ~FitH 381 (381)
+||||
T Consensus 367 ~fItH 371 (507)
T PHA03392 367 AFVTQ 371 (507)
T ss_pred EEEec
Confidence 99999
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.5e-38 Score=307.15 Aligned_cols=302 Identities=23% Similarity=0.253 Sum_probs=160.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCC--
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENID-- 99 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-- 99 (381)
+|+++|. ++||+++|..|+++|++|||+||++++..... +... ...+++++.++.+.......+......
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6788885 77999999999999999999999998754221 1111 112455555553322111111111000
Q ss_pred ---CCCChhHHHHHHHHH----HhcHHHH---------HHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchH
Q 046582 100 ---MLPSIDLASKFFNSL----SMLQLPF---------ENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSC 163 (381)
Q Consensus 100 ---~~~~~~~~~~~~~~~----~~~~~~l---------~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~ 163 (381)
............... ......+ .+.+++ .+||++|+|.+.+|+..+|+.+++|.+.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 000000001111111 0111111 122233 4799999999999999999999999877544332
Q ss_pred HHHHHHHHhhhhcCCCC-CCCCCCccccCCCCCCCCcccCcCCCCCCCCC-cH-HHHHHH-HHHhhhc------------
Q 046582 164 FCLLCMNLLRDSKVHEN-VASDSEYFNIPGLPDHIGFTRVQIPIPTHKRD-DK-KELREK-IWAAEKK------------ 227 (381)
Q Consensus 164 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~------------ 227 (381)
.. ..... .+.+..++++|... ....+.+ +|.+|. ++ ..+... .......
T Consensus 152 ~~----------~~~~~~~g~p~~psyvP~~~----s~~~~~m-sf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (500)
T PF00201_consen 152 MY----------DLSSFSGGVPSPPSYVPSMF----SDFSDRM-SFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGF 216 (500)
T ss_dssp CS----------CCTCCTSCCCTSTTSTTCBC----CCSGTTS-SSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-
T ss_pred cc----------hhhhhccCCCCChHHhcccc----ccCCCcc-chhhhhhhhhhhhhhccccccchhhHHHHHhhhccc
Confidence 11 01122 25566777888765 3455667 888873 21 111111 1111111
Q ss_pred ----------CcEEEeccHHHhhHHHHHHHHccCCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcE
Q 046582 228 ----------TYGAIINTFEEIESAFVEGCKKGKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSV 297 (381)
Q Consensus 228 ----------~~~~~~ns~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~sv 297 (381)
+..+++|+... +++.++. .|+++.||+++...++ +++.+++.|+++..++||
T Consensus 217 ~~~~~~~~~~~~l~l~ns~~~-----ld~prp~-~p~v~~vGgl~~~~~~------------~l~~~~~~~~~~~~~~~v 278 (500)
T PF00201_consen 217 PFSFRELLSNASLVLINSHPS-----LDFPRPL-LPNVVEVGGLHIKPAK------------PLPEELWNFLDSSGKKGV 278 (500)
T ss_dssp GGGCHHHHHHHHHCCSSTEEE---------HHH-HCTSTTGCGC-S----------------TCHHHHHHHTSTTTTTEE
T ss_pred ccccHHHHHHHHHHhhhcccc-----CcCCcch-hhcccccCcccccccc------------ccccccchhhhccCCCCE
Confidence 11111222111 1223332 2688889998765332 378899999998556679
Q ss_pred EEEeeCCCcC-CChhhHHHHHHHHhhCCCCEEEEEeCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCce
Q 046582 298 VYVCLGSICN-LKSSQLIELGLGLEASKKPFIWVTRVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVG 376 (381)
Q Consensus 298 IyvSfGS~~~-~~~~~~~~l~~al~~~~~~~lW~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~ 376 (381)
|||||||++. ++.++++++++||++++++||||+++... .. +| +|+++.+|+||+|||+||+|+
T Consensus 279 v~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~----~~--l~---------~n~~~~~W~PQ~~lL~hp~v~ 343 (500)
T PF00201_consen 279 VYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP----EN--LP---------KNVLIVKWLPQNDLLAHPRVK 343 (500)
T ss_dssp EEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG----CH--HH---------TTEEEESS--HHHHHTSTTEE
T ss_pred EEEecCcccchhHHHHHHHHHHHHhhCCCccccccccccc----cc--cc---------ceEEEeccccchhhhhcccce
Confidence 9999999986 66666899999999999999999987421 11 33 567777999999999999999
Q ss_pred eeccC
Q 046582 377 GFLTH 381 (381)
Q Consensus 377 ~FitH 381 (381)
+||||
T Consensus 344 ~fitH 348 (500)
T PF00201_consen 344 LFITH 348 (500)
T ss_dssp EEEES
T ss_pred eeeec
Confidence 99999
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.97 E-value=4.6e-33 Score=269.05 Aligned_cols=320 Identities=30% Similarity=0.382 Sum_probs=181.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeE---EEecCCCcccCCCCCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRL---TEIQFPWKEAGLPEGCE 96 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~ 96 (381)
+.+++++++|++||++|+..+|++|++|||+||++++..+....... . ....+.. ...++....++++.+..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-S----KSKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-c----cceeeeeeecChHHhhhhhhhhccchH
Confidence 46899999999999999999999999999999999888665432210 0 0001111 11111000012222211
Q ss_pred CCCCCCChhHHHHHHHHHH-hcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcC-CCeEEEecchHHHHHHHHHhhh
Q 046582 97 NIDMLPSIDLASKFFNSLS-MLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFN-VPRIIFHGFSCFCLLCMNLLRD 174 (381)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~-iP~v~~~~~~~~~~~~~~~~~~ 174 (381)
... .........+...+. .+.+....+......+||++|+|.+..|...+|.... ++...+.+.+......
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------ 152 (496)
T KOG1192|consen 80 DDD-LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLAL------ 152 (496)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhc------
Confidence 100 000000112222222 2223233333332234999999999778888887775 8887777776655322
Q ss_pred hcCCCCCCCCCCccccCCCCCCCCcccCcCCCCCCCCCc------HHHHHH---------HHH-Hhh-------hcCcEE
Q 046582 175 SKVHENVASDSEYFNIPGLPDHIGFTRVQIPIPTHKRDD------KKELRE---------KIW-AAE-------KKTYGA 231 (381)
Q Consensus 175 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---------~~~-~~~-------~~~~~~ 231 (381)
+.+....++|.... ....+.+ ++.++.. ...... ... ... ..+..+
T Consensus 153 -------g~~~~~~~~p~~~~---~~~~~~~-~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 221 (496)
T KOG1192|consen 153 -------GLPSPLSYVPSPFS---LSSGDDM-SFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGI 221 (496)
T ss_pred -------CCcCcccccCcccC---ccccccC-cHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHh
Confidence 22222334444331 0111222 3333311 000000 000 000 011123
Q ss_pred Eecc-HHHhhHHHHHHHHcc-CCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCC--cEEEEeeCCCc-
Q 046582 232 IINT-FEEIESAFVEGCKKG-KQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPS--SVVYVCLGSIC- 306 (381)
Q Consensus 232 ~~ns-~~~le~~~~~~~~~~-~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~--svIyvSfGS~~- 306 (381)
+.|+ +..++.......+.. ..+++++|||+++..... ....+++|++..+.+ |||||||||++
T Consensus 222 ~~~~~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~ 289 (496)
T KOG1192|consen 222 IVNASFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ------------KSPLPLEWLDILDESRHSVVYISFGSMVN 289 (496)
T ss_pred hhcCeEEEEccCcccCCCCCCCCCCceEECcEEecCccc------------cccccHHHHHHHhhccCCeEEEECCcccc
Confidence 3333 444444333233222 247899999998763211 112567777776665 89999999999
Q ss_pred --CCChhhHHHHHHHHhhC-CCCEEEEEeCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHh-hcCCCceeeccC
Q 046582 307 --NLKSSQLIELGLGLEAS-KKPFIWVTRVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMI-LSHPAVGGFLTH 381 (381)
Q Consensus 307 --~~~~~~~~~l~~al~~~-~~~~lW~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~v-L~Hp~v~~FitH 381 (381)
.++++++.+++.||+++ +++|||+++++.... +++++.++ ...|++..+|+||.++ |+|++|||||||
T Consensus 290 ~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~------~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTH 361 (496)
T KOG1192|consen 290 SADLPEEQKKELAKALESLQGVTFLWKYRPDDSIY------FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTH 361 (496)
T ss_pred cccCCHHHHHHHHHHHHhCCCceEEEEecCCcchh------hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEEC
Confidence 69999999999999999 889999999864321 23333322 2346777799999999 599999999999
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.92 E-value=1.8e-23 Score=195.96 Aligned_cols=285 Identities=18% Similarity=0.164 Sum_probs=160.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhH
Q 046582 27 PFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDL 106 (381)
Q Consensus 27 ~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (381)
.+|+.||++|++.||++|++|||+||+++++.+.+.+++. ++.+..++.........+. ... ......
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~--~~~-~~~~~~ 69 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE--NTE-EEPIDI 69 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc--ccC-cchHHH
Confidence 5789999999999999999999999999999888777664 7888777643211001110 000 001112
Q ss_pred HHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhcCCCCCCCCCC
Q 046582 107 ASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSKVHENVASDSE 186 (381)
Q Consensus 107 ~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (381)
...+........+.+.++++. .++|+||+|.++.++..+|+++|||+|.+++...... ..
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~------------------~~ 129 (392)
T TIGR01426 70 IEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE------------------EF 129 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc------------------cc
Confidence 222222222222334444444 5899999999988999999999999998864432110 00
Q ss_pred ccccCCCCCCCCcccCcCCCCCCCCCcHHHHHHHHHHhh--h----------cCcEEEeccHHHhhHHHHHHHHccCCCc
Q 046582 187 YFNIPGLPDHIGFTRVQIPIPTHKRDDKKELREKIWAAE--K----------KTYGAIINTFEEIESAFVEGCKKGKQGK 254 (381)
Q Consensus 187 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~ns~~~le~~~~~~~~~~~~~~ 254 (381)
+...|.+.... +........... .+.+.+.+..... . .....+..+-..+ ......++++
T Consensus 130 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l-----~~~~~~~~~~ 201 (392)
T TIGR01426 130 EEMVSPAGEGS-AEEGAIAERGLA--EYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAF-----QPAGETFDDS 201 (392)
T ss_pred cccccccchhh-hhhhccccchhH--HHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHh-----CCCccccCCC
Confidence 00000000000 000000000000 0101111111100 0 0000111111112 1223345677
Q ss_pred eEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEEeCC
Q 046582 255 VWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVTRVG 334 (381)
Q Consensus 255 v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~~~~ 334 (381)
+..+||+.... .+...|+...+.+.+|||||||+.....+.++++++++.+.+++++|.....
T Consensus 202 ~~~~Gp~~~~~-----------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~ 264 (392)
T TIGR01426 202 FTFVGPCIGDR-----------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG 264 (392)
T ss_pred eEEECCCCCCc-----------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 88899875421 1122366655556699999999877666678889999999999999987544
Q ss_pred CchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 335 SKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 335 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
...+.... ...|+.+.+|+||.++|+|.+ +||||
T Consensus 265 ~~~~~~~~-----------~~~~v~~~~~~p~~~ll~~~~--~~I~h 298 (392)
T TIGR01426 265 VDPADLGE-----------LPPNVEVRQWVPQLEILKKAD--AFITH 298 (392)
T ss_pred CChhHhcc-----------CCCCeEEeCCCCHHHHHhhCC--EEEEC
Confidence 22111111 235777779999999999855 79998
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.90 E-value=2.5e-22 Score=189.09 Aligned_cols=298 Identities=13% Similarity=0.081 Sum_probs=158.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCC-CCCCCCC
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLP-EGCENID 99 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~ 99 (381)
+||++++.|+.||++|++.||++|++|||+|+++++......+++. ++++..++......... .......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 4799999999999999999999999999999999998776655543 78887775432110000 0000000
Q ss_pred CCCChh---HHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchHHHHHHHHHhhhhc
Q 046582 100 MLPSID---LASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSCFCLLCMNLLRDSK 176 (381)
Q Consensus 100 ~~~~~~---~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~~~~~~~~~~~~~~ 176 (381)
...... ....+........+.+.+.++. .++|+||+|.+.+++..+|+++|||++.+++++.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~--------- 140 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS--------- 140 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc---------
Confidence 000001 1111111122222222333333 68999999998889999999999999998876532100
Q ss_pred CCCCCCCCCCccccCCCCCCCCcccCcCCCCCCCCCcHHHHHHHHHHhhhcCcEEEeccHHHhhHHHHHHHHccCCCceE
Q 046582 177 VHENVASDSEYFNIPGLPDHIGFTRVQIPIPTHKRDDKKELREKIWAAEKKTYGAIINTFEEIESAFVEGCKKGKQGKVW 256 (381)
Q Consensus 177 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~~~le~~~~~~~~~~~~~~v~ 256 (381)
...|-.. ....... .......+...........++..++-.... +. .. ..+.++
T Consensus 141 -----------~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~--~~------~~--~~~~~~ 194 (401)
T cd03784 141 -----------AFPPPLG----RANLRLY-ALLEAELWQDLLGAWLRARRRRLGLPPLSL--LD------GS--DVPELY 194 (401)
T ss_pred -----------cCCCccc----hHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--cc------cC--CCcEEE
Confidence 0000000 0000000 000000000000101111111111000000 00 00 001122
Q ss_pred EeCcCcCCCccchhhhh-------c-CCCCCCCchhhccccccCCCCcEEEEeeCCCcCCCh-hhHHHHHHHHhhCCCCE
Q 046582 257 CIGPVSLCNKESIDKVE-------R-GNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNLKS-SQLIELGLGLEASKKPF 327 (381)
Q Consensus 257 ~vGpl~~~~~~~~~~~~-------~-~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~~~-~~~~~l~~al~~~~~~~ 327 (381)
.+.+........++... + .......+.++..|+++. +.+|||+|||+..... +....+++++...+.++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~ 272 (401)
T cd03784 195 GFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRA 272 (401)
T ss_pred ecCcccCCCCCCccccCcEeCCCCCCCCCCCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeE
Confidence 22222211111111100 0 000123467788999864 3499999999987444 45678999999999999
Q ss_pred EEEEeCCCchhhhhhccchhhHHHHhCCCceEecCcchhHHhhcCCCceeeccC
Q 046582 328 IWVTRVGSKLEELEKWLVEENFEERIKGTGLLIRGWAPQVMILSHPAVGGFLTH 381 (381)
Q Consensus 328 lW~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~W~PQ~~vL~Hp~v~~FitH 381 (381)
||......... .. .+.|+.+.+|+||.++|.| +.+||||
T Consensus 273 i~~~g~~~~~~--~~-----------~~~~v~~~~~~p~~~ll~~--~d~~I~h 311 (401)
T cd03784 273 ILSLGWGGLGA--ED-----------LPDNVRVVDFVPHDWLLPR--CAAVVHH 311 (401)
T ss_pred EEEccCccccc--cC-----------CCCceEEeCCCCHHHHhhh--hheeeec
Confidence 99987643210 00 3467888799999999999 7789998
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.70 E-value=2.5e-16 Score=146.54 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=76.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCC
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDM 100 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (381)
+||+++..+..||++|.++|+++|.++||+|+++++..+.+.+++. ++.|...+..........+.. ..
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~--~~ 70 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKF--AG 70 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhh--hc
Confidence 5799999999999999999999999999999999999888887775 555655543200000111100 00
Q ss_pred CCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEec
Q 046582 101 LPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~ 160 (381)
.. .... ...........+.+++.+ ..+|+++.|.-...+ .++..+++|++....
T Consensus 71 ~~--~~~~-~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 124 (406)
T COG1819 71 VK--SFRR-LLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINV 124 (406)
T ss_pred cc--hhHH-HhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhh
Confidence 00 0000 111111122233344444 478999888876666 777888888777543
No 28
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.24 E-value=5.8e-12 Score=100.15 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=77.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCC
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLP 102 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (381)
|++++.++.||++|+++|+++|.+|||+|++.++....+.+++. +++++.++.+. .++.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~---~~~~--------- 59 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDS---RLPR--------- 59 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCG---GGGH---------
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCc---CcCc---------
Confidence 68999999999999999999999999999999999888877554 89998876420 0000
Q ss_pred ChhHHHHH---HH---HHHhcHHHHHHHHhhc----C--CCCcEEEECCCCcchHHHHHHcCCCeEEEecchH
Q 046582 103 SIDLASKF---FN---SLSMLQLPFENLFKEQ----T--PKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSC 163 (381)
Q Consensus 103 ~~~~~~~~---~~---~~~~~~~~l~~ll~~~----~--~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~ 163 (381)
.......+ .. ......+.+++...+. . ...|+++.+.....+..+|++++||.+.....+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 60 SLEPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred ccchhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 00011111 11 1111222222222111 1 2577888888788889999999999998766653
No 29
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.72 E-value=1e-06 Score=80.39 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=64.7
Q ss_pred EEE-EcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCee-EEEecCCCcccCCCCCCCCCCC
Q 046582 23 FLL-LPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIR-LTEIQFPWKEAGLPEGCENIDM 100 (381)
Q Consensus 23 i~~-~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~ 100 (381)
|++ +...+.||+.+.++|+++|.+ ||+|+++++......++.. ++. +...+.... ...++. .
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~--~~~~~~--~-- 65 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKL--KGEDGK--V-- 65 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceE--eecCCc--C--
Confidence 444 444566999999999999999 9999999766522222221 222 222211000 001110 0
Q ss_pred CCChhHHHHHHH--HH-HhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEec
Q 046582 101 LPSIDLASKFFN--SL-SMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 101 ~~~~~~~~~~~~--~~-~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~ 160 (381)
+....+.. .. ........+++++ .+||+||+| +.+.+..+|..+|||.+.+.-
T Consensus 66 ----~~~~~l~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 66 ----NIVKTLRNKEYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred ----cHHHHHHhhccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEec
Confidence 11111110 00 0011123355566 689999999 555567789999999998754
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.31 E-value=7.5e-06 Score=74.61 Aligned_cols=119 Identities=21% Similarity=0.213 Sum_probs=66.6
Q ss_pred EEEEE-cCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCC
Q 046582 22 HFLLL-PFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDM 100 (381)
Q Consensus 22 ~i~~~-~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (381)
||++. ..-+.||+.-.+.|+++| |||+|++++.......+.. .+.+..++.-... . .++ ..+
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~-~~~--~~~- 64 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPI-Q-ENG--RLD- 64 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEe-c-cCC--ccc-
Confidence 44444 444889999999999999 6999999987744332221 1233333211000 0 000 010
Q ss_pred CCChhHHHHHH---HHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecch
Q 046582 101 LPSIDLASKFF---NSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 101 ~~~~~~~~~~~---~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~ 162 (381)
......... .........+.+++++ .++|+||+|. .+.+...|+..|+|++.+....
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~ 124 (318)
T PF13528_consen 65 --RWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQY 124 (318)
T ss_pred --hHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehH
Confidence 001111111 1111122233445555 6899999995 4445678899999999886654
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.01 E-value=9e-05 Score=68.34 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDML 101 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 101 (381)
+|++...++-||+.|.+++|++|.++||+|++++.....+. +.. ...++.++.++.. ++...
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~-----~~~g~~~~~~~~~----~l~~~------- 64 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TII-----EKENIPYYSISSG----KLRRY------- 64 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccC-----cccCCcEEEEecc----CcCCC-------
Confidence 68999999999999999999999999999999976543321 111 1125666666421 22110
Q ss_pred CChhHHHHHHHHHHhcHHH--HHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEEe
Q 046582 102 PSIDLASKFFNSLSMLQLP--FENLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~--l~~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~~ 159 (381)
..+..+......+... ..+++++ .+||+||..--+. .+...|..+++|.+..-
T Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 65 ---FDLKNIKDPFLVMKGVMDAYVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 0011222212222221 2344565 6999999866444 34667778899998763
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.48 E-value=0.0021 Score=59.03 Aligned_cols=115 Identities=22% Similarity=0.222 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeCCcchh-hHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGA-IVTIVTTPVNAA-RFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENID 99 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh-~Vt~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
+|++...++-||+.|-++|+++|.++|+ +|.++.+....+ .+. ...++.++.++.. ++...
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~--------~~~~~~~~~I~~~----~~~~~----- 64 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV--------KQYGIEFELIPSG----GLRRK----- 64 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec--------cccCceEEEEecc----ccccc-----
Confidence 5788888888999999999999999999 466664333222 111 1125666666532 11111
Q ss_pred CCCChhHHHHHHHHHHhc--HHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEEec
Q 046582 100 MLPSIDLASKFFNSLSML--QLPFENLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~l~~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~~~ 160 (381)
.....+...+..+ ....++++++ .++|+||.-.-+. .+...|..+|||.+..-.
T Consensus 65 -----~~~~~~~~~~~~~~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq 122 (357)
T COG0707 65 -----GSLKLLKAPFKLLKGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ 122 (357)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHHhCCCCEEEEec
Confidence 0111111112211 2345667777 6999999754443 344556678999988633
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.42 E-value=0.0029 Score=58.35 Aligned_cols=116 Identities=22% Similarity=0.211 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDML 101 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 101 (381)
+|++......||......+++.|.++||+|++++....... ... ...+++++.++.. .....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~----~~~~~------- 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RLV-----PKAGIPLHTIPVG----GLRRK------- 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hcc-----cccCCceEEEEec----CcCCC-------
Confidence 47888888889999999999999999999999986532110 110 1124666666532 11110
Q ss_pred CChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEE
Q 046582 102 PSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~ 158 (381)
.....+...... ......+.+++++ .++|+|++..-.. ++..+|...++|.+..
T Consensus 63 ~~~~~~~~~~~~-~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 63 GSLKKLKAPFKL-LKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred ChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 000111111111 1112345566666 6899999865332 3455677789998864
No 34
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.30 E-value=0.0049 Score=57.08 Aligned_cols=117 Identities=22% Similarity=0.178 Sum_probs=68.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCC
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDM 100 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (381)
++|+++..+..||...+..|+++|.++||+|++++....... ... ...+++++.++.. +....
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~-~~~------~~~g~~~~~~~~~----~~~~~------ 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEA-RLV------PKAGIEFHFIPSG----GLRRK------ 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh-hcc------ccCCCcEEEEecc----CcCCC------
Confidence 478999887789999999999999999999999987542110 000 1125666665421 11100
Q ss_pred CCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCC-c-chHHHHHHcCCCeEEE
Q 046582 101 LPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGH-P-WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~-~-~~~~~a~~l~iP~v~~ 158 (381)
.....+....... .....+.+++++ .++|+|++.... . .+..++...++|.|..
T Consensus 65 -~~~~~l~~~~~~~-~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 65 -GSLANLKAPFKLL-KGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred -ChHHHHHHHHHHH-HHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 0001111111111 112234556666 689999988633 2 3334466678998765
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.27 E-value=0.0054 Score=56.48 Aligned_cols=116 Identities=21% Similarity=0.191 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDML 101 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 101 (381)
+|+++.....||+.....|+++|.++||+|++++...... .... ...+++++.++.. .... .
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~----~~~~----~--- 63 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVG----GLRR----K--- 63 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEecc----CcCC----C---
Confidence 6899999999999977899999999999999997643211 0110 1125666665431 1000 0
Q ss_pred CChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEE
Q 046582 102 PSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~ 158 (381)
.....+........ ....+.+++++ .++|+|++..... .+..++...++|.+.+
T Consensus 64 ~~~~~l~~~~~~~~-~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 64 GSFRLIKTPLKLLK-AVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 00011111111111 12245566666 6999999875433 2334567779998753
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=97.00 E-value=0.0051 Score=57.59 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=65.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCC
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDM 100 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (381)
++|++....+.||+.|- +|+++|.++|++|+++..... .+++... ...+++..++. .++
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-----~~~~~~~~l~v----~G~--------- 64 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-----EVLYSMEELSV----MGL--------- 64 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-----ccccChHHhhh----ccH---------
Confidence 47999999999999999 999999999999999864422 2222200 00122222110 010
Q ss_pred CCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEE-ECCCCcc--hHHHHHHcCCCeEEEe
Q 046582 101 LPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCII-SDMGHPW--TVDTAAKFNVPRIIFH 159 (381)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI-~d~~~~~--~~~~a~~l~iP~v~~~ 159 (381)
...+..+.... .....+.+++++ .+||+|| .|.-... ....|+.+|+|.+.+.
T Consensus 65 ---~~~l~~~~~~~-~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i 120 (385)
T TIGR00215 65 ---REVLGRLGRLL-KIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI 120 (385)
T ss_pred ---HHHHHHHHHHH-HHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe
Confidence 01112221111 122345566666 6999999 6742222 2236788899998873
No 37
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.98 E-value=0.38 Score=46.37 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCC-----CCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 18 ASQFHFLLLPFLA-----QGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 18 ~~~~~i~~~~~~~-----~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
..++||+++..+. .|=-+-+..++++|.++||+|+++++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4467888774332 2444677899999999999999998764
No 38
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.42 E-value=0.051 Score=49.46 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHHHHH
Q 046582 32 GHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLASKFF 111 (381)
Q Consensus 32 gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (381)
-|+..+..++++|.++||+|.+.+-... .....+. ..++++..+... + . .....+.
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~-----~yg~~y~~iG~~----g--~-----------~~~~Kl~ 66 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLD-----LYGIDYIVIGKH----G--D-----------SLYGKLL 66 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHH-----HcCCCeEEEcCC----C--C-----------CHHHHHH
Confidence 4999999999999999999987764322 1222221 127777776410 1 1 1112222
Q ss_pred HHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecchH
Q 046582 112 NSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFSC 163 (381)
Q Consensus 112 ~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~~ 163 (381)
.......+ +-+++++ .++|++|+-. ...+..+|..+|+|.|.+.=...
T Consensus 67 ~~~~R~~~-l~~~~~~--~~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 67 ESIERQYK-LLKLIKK--FKPDVAISFG-SPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred HHHHHHHH-HHHHHHh--hCCCEEEecC-cHHHHHHHHHhCCCeEEEecCch
Confidence 22222222 3334444 5899999632 34566688999999999866543
No 39
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.41 E-value=0.089 Score=49.87 Aligned_cols=121 Identities=17% Similarity=0.002 Sum_probs=65.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENID 99 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
..+|++++....|+-.=+..+|++|+++||+||+++........+.. ...++.++.++.. +.....
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~------~~~~v~~~~~~~~------~~~~~~-- 68 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL------SNPNITIHPLPPP------PQRLNK-- 68 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh------cCCCEEEEECCCC------cccccc--
Confidence 34677777777777667788999999999999999765322111101 1236777766421 000000
Q ss_pred CCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECC-CCc--c--hHHHHHHcCCCeEEEe
Q 046582 100 MLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDM-GHP--W--TVDTAAKFNVPRIIFH 159 (381)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~-~~~--~--~~~~a~~l~iP~v~~~ 159 (381)
.......+..........+..++.. .++|+|++.. ... . +..++...++|.|..+
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~~~l~~~--~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~ 128 (415)
T cd03816 69 ---LPFLLFAPLKVLWQFFSLLWLLYKL--RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDW 128 (415)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEc
Confidence 0011111122222233344445555 5899999643 221 1 2233555689987643
No 40
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.33 E-value=0.05 Score=42.59 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=59.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCC
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLP 102 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (381)
|+++......| ...+++.|.++||+|++++.......... ..++.++.++.+ ..
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~---------~k------ 55 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSP---------RK------ 55 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCC---------CC------
Confidence 55555554444 56889999999999999998544322111 136777776421 00
Q ss_pred ChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCc-chH--HHHHHcC-CCeEEE
Q 046582 103 SIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHP-WTV--DTAAKFN-VPRIIF 158 (381)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~-~~~--~~a~~l~-iP~v~~ 158 (381)
.....+ . +. .+.+++++ .+||+|.+..... +.. .++...+ +|.+..
T Consensus 56 --~~~~~~----~-~~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 56 --SPLNYI----K-YF-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred --ccHHHH----H-HH-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 001111 1 12 56777777 6899998777655 332 2445667 787753
No 41
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.17 E-value=0.16 Score=47.83 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=61.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCC
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLP 102 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (381)
|+|+.--..| ++..||++|+++||+|++++....... .. +++++.+...... .. ....
T Consensus 2 il~~~~~~p~---~~~~la~~L~~~G~~v~~~~~~~~~~~----------~~-~v~~~~~~~~~~~----~~----~~~~ 59 (396)
T cd03818 2 ILFVHQNFPG---QFRHLAPALAAQGHEVVFLTEPNAAPP----------PG-GVRVVRYRPPRGP----TS----GTHP 59 (396)
T ss_pred EEEECCCCch---hHHHHHHHHHHCCCEEEEEecCCCCCC----------CC-CeeEEEecCCCCC----CC----CCCc
Confidence 4555433333 478899999999999999987654321 11 4666666432110 00 0000
Q ss_pred ChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHc-CCCeEEEec
Q 046582 103 SIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKF-NVPRIIFHG 160 (381)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l-~iP~v~~~~ 160 (381)
..............+...+..+..+ +.+||+|++.....++..+.+.+ ++|.|.+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~ 117 (396)
T cd03818 60 YLREFEEAVLRGQAVARALLALRAK-GFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFE 117 (396)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhc-CCCCCEEEECCccchhhhHHHhCCCCCEEEEEe
Confidence 0011111111112223333444322 36899999987666666666665 588887653
No 42
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.99 E-value=0.099 Score=46.58 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHH
Q 046582 29 LAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLAS 108 (381)
Q Consensus 29 ~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (381)
-+.||+.=.++||++|.++||+|++++........+.. . ..++.+..++.. .+.
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i-~-----~~g~~v~~~~~~-------~~~------------- 65 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLL-L-----SAGFPVYELPDE-------SSR------------- 65 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHH-H-----HcCCeEEEecCC-------Cch-------------
Confidence 46799999999999999999999999876544322221 1 125666655421 000
Q ss_pred HHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCc
Q 046582 109 KFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHP 142 (381)
Q Consensus 109 ~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~ 142 (381)
..-...+.+++++ .++|++|+|.+..
T Consensus 66 ------~~d~~~~~~~l~~--~~~d~vV~D~y~~ 91 (279)
T TIGR03590 66 ------YDDALELINLLEE--EKFDILIVDHYGL 91 (279)
T ss_pred ------hhhHHHHHHHHHh--cCCCEEEEcCCCC
Confidence 0111235566666 5899999999754
No 43
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=95.86 E-value=1.4 Score=40.34 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.|+......+++.|+++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 48999999999999999999999987644
No 44
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.68 E-value=0.095 Score=48.94 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
++|+++.....||+.|-. ++++|.++++++.++..
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~ 36 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGV 36 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEE
Confidence 379999999999999999 99999999888888753
No 45
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.26 E-value=0.015 Score=46.43 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHHHHHHHH
Q 046582 35 IPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLASKFFNSL 114 (381)
Q Consensus 35 ~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (381)
.-+..|+++|+++||+||++++.......+. ...+++++.++..... . .. ....
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~---~~------~~~~------ 58 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEE-------EEDGVRVHRLPLPRRP----W---PL------RLLR------ 58 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SE-------EETTEEEEEE--S-SS----S---GG------GHCC------
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCccccc-------ccCCceEEeccCCccc----h---hh------hhHH------
Confidence 3467899999999999999986654431110 1136777777643110 0 00 0000
Q ss_pred HhcHHHHHHHHhhcCCCCcEEEECCCCc-chHHHHH-HcCCCeEEEec
Q 046582 115 SMLQLPFENLFKEQTPKPCCIISDMGHP-WTVDTAA-KFNVPRIIFHG 160 (381)
Q Consensus 115 ~~~~~~l~~ll~~~~~~~DlvI~d~~~~-~~~~~a~-~l~iP~v~~~~ 160 (381)
....+.+++.....++|+|.+..... ....++. ..++|.|...-
T Consensus 59 --~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 59 --FLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp --HHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred --HHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 01223444411126899999776432 3334455 77999877543
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.15 E-value=0.25 Score=45.03 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.|+-.....++++|+++||+|+++++...
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 43 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGED 43 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCC
Confidence 58889999999999999999999987654
No 47
>PRK10307 putative glycosyl transferase; Provisional
Probab=94.92 E-value=0.24 Score=46.86 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc
Q 046582 36 PMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 36 p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
-...|+++|.++||+|+++++..
T Consensus 20 ~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 20 YTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred hHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999999999999764
No 48
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.87 E-value=0.17 Score=47.21 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHHHH
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLASKF 110 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (381)
-|.-..+..|+++|+++||+|++++........... ....++.++.++..... ... .......+
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~ 84 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAGPAE-YLP----------KEELWPYL 84 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEeccccccc-CCC----------hhhcchhH
Confidence 478889999999999999999999864332211100 01125666555421100 000 00000011
Q ss_pred HHHHHhcHHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEE
Q 046582 111 FNSLSMLQLPFENLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 111 ~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~ 158 (381)
......+.+.+.....++|+|++..... .+..++..+++|+|..
T Consensus 85 ----~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 85 ----DEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred ----HHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 1111222333333112899999875433 3456678889998764
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.87 E-value=0.34 Score=44.82 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=28.7
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 22 HFLLLPFL-AQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 22 ~i~~~~~~-~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
+|+++.+| ..|.-.-...+++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 34444443 44888999999999999999999998653
No 50
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=94.79 E-value=0.24 Score=46.26 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=29.7
Q ss_pred cEEEEEcCCC-CCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 21 FHFLLLPFLA-QGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 21 ~~i~~~~~~~-~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
.+|++++... .||..+..+|+++|.++||+|+++...
T Consensus 5 ~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 5 PKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 4677766664 499999999999999999987766543
No 51
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=93.78 E-value=1.2 Score=45.37 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHH--------HHhCCC----eEEEEeCCcchh-------hHHHHHHhhhcCCCCeeEEEecCCCccc-C
Q 046582 31 QGHLIPMIDIARL--------LAQHGA----IVTIVTTPVNAA-------RFKTVLARATQSGLQIRLTEIQFPWKEA-G 90 (381)
Q Consensus 31 ~gH~~p~~~la~~--------L~~rGh----~Vt~~t~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 90 (381)
-|+..=.+.+|++ |+++|| +|+++|-..... .++.. ....+++++.+|+..... .
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~-----~~~~~~~I~rvp~g~~~~~~ 353 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKV-----YGTEHAWILRVPFRTENGII 353 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccc-----cCCCceEEEEecCCCCcccc
Confidence 5777777878876 578999 777887432211 01111 112467777777543210 0
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHhcHHHHH-HHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEE
Q 046582 91 LPEGCENIDMLPSIDLASKFFNSLSMLQLPFE-NLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~ 158 (381)
++. ..+. ..++.-.+.+.+.+. .+.++...+||+|++..... .+..+++++|||.+.+
T Consensus 354 ~~~------~i~k----~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t 414 (784)
T TIGR02470 354 LRN------WISR----FEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTI 414 (784)
T ss_pred ccc------ccCH----HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEE
Confidence 111 0111 112222233333333 34333335899999877654 4677899999997765
No 52
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.63 E-value=0.42 Score=44.95 Aligned_cols=101 Identities=11% Similarity=0.116 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHHHHH
Q 046582 32 GHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLASKFF 111 (381)
Q Consensus 32 gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (381)
|--.-...+++.|+++||+|+++++......-... ...++.++.+|... ..... .. ..+.
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~------~~~~i~v~~~p~~~----~~~~~----~~------~~~~ 74 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY------LTNGLKVYYLPFVV----FYNQS----TL------PTFF 74 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc------ccCceeEEEeccee----ccCCc----cc------cchh
Confidence 55678899999999999999999865321100000 11256666655321 10000 00 0001
Q ss_pred HHHHhcHHHHHHHHhhcCCCCcEEEECCCCc----chHHHHHHcCCCeEEE
Q 046582 112 NSLSMLQLPFENLFKEQTPKPCCIISDMGHP----WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 112 ~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~----~~~~~a~~l~iP~v~~ 158 (381)
. ....+.+++.. .++|+|-+-.... .+..+++.+++|.|..
T Consensus 75 ~----~~~~l~~~~~~--~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 75 G----TFPLLRNILIR--ERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred h----hHHHHHHHHHh--cCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 1 11234555555 5899999665332 2345577889997763
No 53
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=93.39 E-value=1.2 Score=40.29 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
.|--.-...|++.|.++||+|++++...
T Consensus 19 GG~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 19 GGTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred CcHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 3556778999999999999999998654
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=93.34 E-value=0.65 Score=42.07 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=31.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
|++++....|+...+..++++|.++||+|++++.....
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 55555557799999999999999999999999876544
No 55
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=93.29 E-value=1.3 Score=46.46 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhH--------HHHHH-------hhhcCCCCeeEEEecCCCcccCCCCC
Q 046582 32 GHLIPMIDIARLLAQHG--AIVTIVTTPVNAARF--------KTVLA-------RATQSGLQIRLTEIQFPWKEAGLPEG 94 (381)
Q Consensus 32 gH~~p~~~la~~L~~rG--h~Vt~~t~~~~~~~~--------~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~ 94 (381)
|+..=...||++|+++| |+|+++|-....+.+ +.... ......++++++.+|+......++
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~-- 273 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIP-- 273 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcC--
Confidence 57778899999999998 899999855432211 00000 000012367777776532210111
Q ss_pred CCCCCCCCChhHHHHHHHHHHhcHHHHHH----HHhhc----CCCCcEEEECCCCc--chHHHHHHcCCCeEEEecc
Q 046582 95 CENIDMLPSIDLASKFFNSLSMLQLPFEN----LFKEQ----TPKPCCIISDMGHP--WTVDTAAKFNVPRIIFHGF 161 (381)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----ll~~~----~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~~~~ 161 (381)
...+...+....+.+...+.+ +.++. ...||+|-+..... .+..+++.+|||.|...-+
T Consensus 274 --------Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~HS 342 (1050)
T TIGR02468 274 --------KEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHS 342 (1050)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECcc
Confidence 111111121112222222111 11111 12599999886554 5667888999997775443
No 56
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.25 E-value=1.9 Score=35.18 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHH-HhCCCeEEE-EeCCcch--hhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCCh
Q 046582 29 LAQGHLIPMIDIARLL-AQHGAIVTI-VTTPVNA--ARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSI 104 (381)
Q Consensus 29 ~~~gH~~p~~~la~~L-~~rGh~Vt~-~t~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (381)
++-||+.=|+.|.+.+ .++....++ ++..... .++....... .....+..++ .-. .. ..
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~---~~~~~~~~~~---------r~r-~v----~q 68 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS---SKRHKILEIP---------RAR-EV----GQ 68 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc---cccceeeccc---------eEE-Ee----ch
Confidence 3449999999999999 445444444 4433332 2222221110 0011222222 100 00 00
Q ss_pred hHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcc--hHHHHHHc------CCCeEEEe
Q 046582 105 DLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPW--TVDTAAKF------NVPRIIFH 159 (381)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~--~~~~a~~l------~iP~v~~~ 159 (381)
.........+..+...+.-+++. +||+||+.--..| ...+|..+ |.+.|.+=
T Consensus 69 ~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE 128 (170)
T PF08660_consen 69 SYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE 128 (170)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE
Confidence 11222333333334455555555 8999998876664 34456666 77777763
No 57
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.06 E-value=1.5 Score=35.65 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=34.1
Q ss_pred hcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHc-CCCeEEEec
Q 046582 116 MLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKF-NVPRIIFHG 160 (381)
Q Consensus 116 ~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l-~iP~v~~~~ 160 (381)
.....+.+|.++ +..||+||...-.-.++-+-+.+ ++|.+.+.=
T Consensus 52 av~~a~~~L~~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 52 AVARAARQLRAQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHHHHHHHHc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 445667777776 57899999998877788888888 899888743
No 58
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=93.03 E-value=0.61 Score=42.65 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 28 FLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 28 ~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
....|+......++++|+++||+|+++++...
T Consensus 11 p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 11 PQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred CCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 34568999999999999999999999987643
No 59
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=92.86 E-value=0.53 Score=42.37 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=42.6
Q ss_pred cEEEEEcCC--CCCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecC
Q 046582 21 FHFLLLPFL--AQGHLIPMIDIARLLAQH--GAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQF 84 (381)
Q Consensus 21 ~~i~~~~~~--~~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 84 (381)
.+|++...- +-||..=.+.||+.|++. |.+|+++|+.....-+. ...+++++.+|.
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~~~gVd~V~LPs 69 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------GPAGVDFVKLPS 69 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------CcccCceEecCc
Confidence 477777654 569999999999999997 99999999775543221 113788988874
No 60
>PLN00142 sucrose synthase
Probab=92.44 E-value=0.76 Score=46.83 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=27.5
Q ss_pred HHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEEec
Q 046582 123 NLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 123 ~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~~~ 160 (381)
.+.++...+||+|.+..... .+..+++++|||.|...-
T Consensus 400 ~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 400 EILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred HHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 33343335799999887655 567889999999987653
No 61
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=92.36 E-value=2.9 Score=38.98 Aligned_cols=37 Identities=27% Similarity=0.231 Sum_probs=26.5
Q ss_pred EEEEEc-CCC-CCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 22 HFLLLP-FLA-QGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 22 ~i~~~~-~~~-~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
+|+++. ... .|=-.-+..||++|+++||+|+++++..
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 355443 322 3445567899999999999999998653
No 62
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=92.16 E-value=1.6 Score=41.00 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHHH
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLASK 109 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (381)
..|--.-...|+++|+++||+||++++......-... ....+++++.++.... .. ... . .
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~----~~-------~~~-~---~ 78 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVV-----EVAPGVRVRNVVAGPY----EG-------LDK-E---D 78 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCcc-----ccCCCcEEEEecCCCc----cc-------CCH-H---H
Confidence 3477788999999999999999999865321110000 0112566665532110 00 000 0 0
Q ss_pred HHHHHHh-cHHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEEe
Q 046582 110 FFNSLSM-LQLPFENLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 110 ~~~~~~~-~~~~l~~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~~ 159 (381)
+...... ....++.++.....++|+|-+..... .+..+++.+++|+|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~ 131 (405)
T TIGR03449 79 LPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTA 131 (405)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEec
Confidence 1111111 12234444443224799997665333 34455677899987644
No 63
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=91.69 E-value=1.1 Score=42.69 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhCCC--eEEEEeCCcchhhH-HHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHH
Q 046582 32 GHLIPMIDIARLLAQHGA--IVTIVTTPVNAARF-KTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLAS 108 (381)
Q Consensus 32 gH~~p~~~la~~L~~rGh--~Vt~~t~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (381)
|=-.-+..|+++|+++|| +|+++|........ ............+++++.++... ..... ..
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~------~~~~~---------~~ 91 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGP------RRYLR---------KE 91 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCC------CCCcC---------hh
Confidence 445677899999999998 99999853211000 00000000011356666665311 00000 00
Q ss_pred HHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEE
Q 046582 109 KFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 109 ~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~ 158 (381)
.+......+...+.+++++...+||+|-+..... .+..+++.+++|+|..
T Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t 143 (439)
T TIGR02472 92 LLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFT 143 (439)
T ss_pred hhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEe
Confidence 0111112223334444443223799999876433 3445667789998664
No 64
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=91.59 E-value=1.9 Score=39.41 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHHHH
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLASKF 110 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (381)
.|--.....++++|+++||+|+++++...... .. ...+++++.++.. .. .....+
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~--~~------~~~~~~~~~~~~~-------~~----------~~~~~~ 64 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVA--EL------EAEGSRHIKLPFI-------SK----------NPLRIL 64 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHH--HH------HhcCCeEEEcccc-------cc----------chhhhH
Confidence 47778889999999999999999986543211 11 0125555554321 00 000000
Q ss_pred HHHHHhcHHHHHHHHhhcCCCCcEEEECCCCc-c-hHHHHHHcCCCeEEEec
Q 046582 111 FNSLSMLQLPFENLFKEQTPKPCCIISDMGHP-W-TVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 111 ~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~-~-~~~~a~~l~iP~v~~~~ 160 (381)
.. ...+.++++. .++|+|++..... + +..++..+++|.+....
T Consensus 65 -~~----~~~l~~~~~~--~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 65 -LN----VARLRRLIRE--EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred -HH----HHHHHHHHHH--cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 01 1224445555 5899999876433 2 33445677899876544
No 65
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.93 E-value=2.2 Score=37.40 Aligned_cols=96 Identities=21% Similarity=0.130 Sum_probs=61.0
Q ss_pred EEEEEcCC----CCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCC
Q 046582 22 HFLLLPFL----AQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCEN 97 (381)
Q Consensus 22 ~i~~~~~~----~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 97 (381)
||+++.-. +.||+.=++.||++|.++|..+++++......-+.+.. .++.+ +..
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-------~~f~~------------~~~--- 59 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-------EGFKV------------LEG--- 59 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-------hhccc------------eee---
Confidence 45554433 56999999999999999999999998775443221110 00100 000
Q ss_pred CCCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcc---hHHHHHHcCCCeEEEecchH
Q 046582 98 IDMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPW---TVDTAAKFNVPRIIFHGFSC 163 (381)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~---~~~~a~~l~iP~v~~~~~~~ 163 (381)
. .-. .+++ .++|++|.|.+..- .-.+..+.+.+.+.|-.-..
T Consensus 60 -----------------~----~~n-~ik~--~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~ 104 (318)
T COG3980 60 -----------------R----GNN-LIKE--EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENA 104 (318)
T ss_pred -----------------e----ccc-cccc--ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCc
Confidence 0 000 3444 69999999998763 45567788999999854443
No 66
>PLN02275 transferase, transferring glycosyl groups
Probab=90.36 E-value=11 Score=35.12 Aligned_cols=57 Identities=14% Similarity=-0.022 Sum_probs=37.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEec
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGA-IVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQ 83 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh-~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 83 (381)
.++.++..+-.|.-.-+..++..|+++|| +||+++........+.. ...+++++.++
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~------~~~~v~v~r~~ 62 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALL------NHPSIHIHLMV 62 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHh------cCCcEEEEECC
Confidence 35556666777888889999999999986 79999754432211111 22367777765
No 67
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=89.11 E-value=4.4 Score=36.55 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.|+...+..+++.|.+.||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~ 42 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDG 42 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCC
Confidence 68999999999999999999999987644
No 68
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=88.94 E-value=4.1 Score=34.08 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
..|+-.....+++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999987
No 69
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.89 E-value=2.8 Score=32.82 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARF 63 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~ 63 (381)
++.++++.+.++.+|-.-..-++..|.++|++|+++......+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 467899999999999999999999999999999999765544433
No 70
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.69 E-value=8.8 Score=34.25 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCcc--hhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHH
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPVN--AARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLAS 108 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (381)
.-|+..+..+..+|.++||+|-+-+-... ...++.+ |+.+..+.-. + . . ....
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~----g----~-----~---tl~~ 64 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKH----G----G-----V---TLKE 64 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeeccc----C----C-----c---cHHH
Confidence 46888999999999999999875543322 1222222 6776665310 0 0 0 1111
Q ss_pred HHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecch
Q 046582 109 KFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 109 ~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~~ 162 (381)
.+....+. .-.+.++..+ .++|+.+. ...+-+..+|--+|+|.+++.-..
T Consensus 65 Kl~~~~eR-~~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 65 KLLESAER-VYKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHHH-HHHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 22222211 1246677777 79999998 556678888999999999986554
No 71
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=88.46 E-value=6.1 Score=36.07 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 29 LAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 29 ~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
..-|.-.-+..++++|.++||+|++++.....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 35588899999999999999999999866443
No 72
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=86.54 E-value=5.3 Score=35.81 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.|....+..++++|+++||+|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 57778888999999999999999987654
No 73
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=86.39 E-value=5 Score=35.64 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
+..+|-+--+|+-|-..-.-.|+++|.++||+|-++.-.+..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 445788999999999999999999999999999999755543
No 74
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=86.18 E-value=12 Score=34.84 Aligned_cols=100 Identities=14% Similarity=0.294 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEe-CCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH--GAIVTIVT-TPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENI 98 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r--Gh~Vt~~t-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (381)
-++-+...+.|-++-...|.++|.++ +..+++-| ++...+.+++. .++.+....+|.+
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~------~~~~v~h~YlP~D------------- 110 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAAL------FGDSVIHQYLPLD------------- 110 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHH------cCCCeEEEecCcC-------------
Confidence 47778888899999999999999999 78877765 33344444443 2223555555531
Q ss_pred CCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEE-ECC-CCcchHHHHHHcCCCeEEEec
Q 046582 99 DMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCII-SDM-GHPWTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI-~d~-~~~~~~~~a~~l~iP~v~~~~ 160 (381)
+...+++.++. .++|++| +|. +.++...-+++.|+|.+.+..
T Consensus 111 ------------------~~~~v~rFl~~--~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 111 ------------------LPIAVRRFLRK--WRPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred ------------------chHHHHHHHHh--cCCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 01234566666 5788766 776 455777888999999988743
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=85.31 E-value=5.7 Score=36.29 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
..|=-.-...++++|.++||+|++++....
T Consensus 14 ~gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 14 YGGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred cCcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 345567788999999999999999986543
No 76
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=84.21 E-value=31 Score=31.01 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
..|+..-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 3689999999999999999999999876543
No 77
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=83.95 E-value=8.6 Score=33.60 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
+++|++..=-+. |.--+..|+++|.+.| +|+++.|....+
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 467776655442 3356788889998888 799999887654
No 78
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=83.00 E-value=1.8 Score=39.40 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
.|+.+.+..|+++|+++||+|+++++..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~ 41 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGP 41 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899999999999999999999998764
No 79
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=82.97 E-value=5.4 Score=30.14 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
++++.+.++..|.....-++..|.++|++|..+......
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 478999999999999999999999999999887544333
No 80
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=82.90 E-value=1.6 Score=35.06 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.|=-..+..|+++|+++||+||++++...
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 46678899999999999999999987644
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=82.33 E-value=22 Score=31.96 Aligned_cols=31 Identities=6% Similarity=0.006 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 29 LAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 29 ~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
..-|.-.....|+++|.+.||+|.+++....
T Consensus 10 ~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 10 DVGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred cCccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 3468999999999999999999999976543
No 82
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=81.93 E-value=9.3 Score=36.23 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=58.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEE--EeC-CcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTI--VTT-PVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENI 98 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~--~t~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (381)
.++-+...+-|.+.-...|+++|.++++++.+ .+. ......+.+. ...++.+..+|.+ .
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~------~~~~~~~~~~P~d-----~------- 112 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQAL------FGDDVEHRYLPYD-----L------- 112 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHh------cCCCceEEEecCC-----c-------
Confidence 46677778889999999999999998765332 221 2222222221 1113444444421 0
Q ss_pred CCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCC--CcchHHHHHHcCCCeEEEe
Q 046582 99 DMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMG--HPWTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~--~~~~~~~a~~l~iP~v~~~ 159 (381)
...++++++. .+||+++.... .+.....+.+.|+|.+.+.
T Consensus 113 -------------------~~~~~~~l~~--~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 113 -------------------PGAVRRFLRF--WRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred -------------------HHHHHHHHHh--hCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 0234556666 68999984322 2334456778899998764
No 83
>PRK00654 glgA glycogen synthase; Provisional
Probab=80.95 E-value=2.4 Score=40.84 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
.-|.-.....|+++|+++||+|+++++.
T Consensus 16 ~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 16 TGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred cCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3467788899999999999999999975
No 84
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=80.89 E-value=3.4 Score=33.05 Aligned_cols=35 Identities=26% Similarity=0.140 Sum_probs=29.2
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEE
Q 046582 297 VVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVT 331 (381)
Q Consensus 297 vIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~ 331 (381)
.+|+|+||+..-+.++++...++|.+.+..-+++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999999888889999999988886555553
No 85
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=80.86 E-value=6.6 Score=34.04 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 33 HLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 33 H~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
|.--+..|++.|. .+++||++.|..+.+
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qS 39 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQS 39 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCc
Confidence 4455677888888 999999999987765
No 86
>PLN02846 digalactosyldiacylglycerol synthase
Probab=80.64 E-value=2.5 Score=40.47 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCC----CCHHHHHHHHHHHHhCC-CeEEEEeCCc
Q 046582 19 SQFHFLLLPFLAQ----GHLIPMIDIARLLAQHG-AIVTIVTTPV 58 (381)
Q Consensus 19 ~~~~i~~~~~~~~----gH~~p~~~la~~L~~rG-h~Vt~~t~~~ 58 (381)
+++||++++-... |=....+.++..|+++| |+|+++.|..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 3578998876543 55567788888999999 8999998753
No 87
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=80.14 E-value=34 Score=32.42 Aligned_cols=117 Identities=19% Similarity=0.161 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhC--CCeEEEEeCCcchhh---HHHHHHhh-hcCCCCeeEEEec-CCCcccCCCCCCCCCCCCCCh
Q 046582 32 GHLIPMIDIARLLAQH--GAIVTIVTTPVNAAR---FKTVLARA-TQSGLQIRLTEIQ-FPWKEAGLPEGCENIDMLPSI 104 (381)
Q Consensus 32 gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~~---~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 104 (381)
|==..+...+..|.++ ||+|+++|+...... +.+..... .....++.++.+. .. ..++... .
T Consensus 15 g~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~---~~~~~~~--~------ 83 (419)
T cd03806 15 GGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYR---KLVEAST--Y------ 83 (419)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecce---eeecccc--C------
Confidence 3446778888999988 899999998765532 11111110 0111233433321 00 0111100 0
Q ss_pred hHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCcchHHHHHH-cCCCeEEEecch
Q 046582 105 DLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHPWTVDTAAK-FNVPRIIFHGFS 162 (381)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~-l~iP~v~~~~~~ 162 (381)
..+..++.....+.-.++.+.. .+||++|.+.-...+..++.. .++|.+.+.-.+
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~~---~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P 139 (419)
T cd03806 84 PRFTLLGQALGSMILGLEALLK---LVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYP 139 (419)
T ss_pred CceeeHHHHHHHHHHHHHHHHh---cCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCC
Confidence 0011122222222223343332 379999988866666666665 478988876544
No 88
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=79.69 E-value=23 Score=33.20 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=25.0
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhCCC---eEEEE
Q 046582 22 HFLLLPFL-AQGHLIPMIDIARLLAQHGA---IVTIV 54 (381)
Q Consensus 22 ~i~~~~~~-~~gH~~p~~~la~~L~~rGh---~Vt~~ 54 (381)
+|++++.. +.||...-.+|.++|.++|. +|.++
T Consensus 7 ~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 7 KILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 56655544 67999999999999998864 45544
No 89
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=78.59 E-value=18 Score=31.55 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
|||+..=-+. |.--+..|+++|.+ +|+|+++.|....+
T Consensus 2 ~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 2 NILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred eEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 3444433332 23337888888865 68999999887654
No 90
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=78.54 E-value=26 Score=34.72 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=24.1
Q ss_pred CCCcEEE-ECCCCc--chHHHHHHcCC--CeEEEecchH
Q 046582 130 PKPCCII-SDMGHP--WTVDTAAKFNV--PRIIFHGFSC 163 (381)
Q Consensus 130 ~~~DlvI-~d~~~~--~~~~~a~~l~i--P~v~~~~~~~ 163 (381)
.++|++| .|.-.. -....+++.|+ |++.+.+...
T Consensus 309 ~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqV 347 (608)
T PRK01021 309 TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSI 347 (608)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccc
Confidence 5899998 688443 45567788896 9887755444
No 91
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=78.49 E-value=3.4 Score=30.13 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=45.3
Q ss_pred CchhhccccccCCCCcEEEEeeCCCcCC---Ch--hhHHHHHHHHhhCCCCEEEEEeCCCc
Q 046582 281 DVPECLTWLDSQQPSSVVYVCLGSICNL---KS--SQLIELGLGLEASKKPFIWVTRVGSK 336 (381)
Q Consensus 281 ~~~~l~~fLd~~~~~svIyvSfGS~~~~---~~--~~~~~l~~al~~~~~~~lW~~~~~~~ 336 (381)
-+..+..||...+.+.-|.+++||.... .. ..+..++++++.++.-|+-.......
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 3467788998887778899999999873 32 46789999999999999999876543
No 92
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=77.97 E-value=3.4 Score=37.81 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=30.1
Q ss_pred EEEEEcCC-C-CCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 22 HFLLLPFL-A-QGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 22 ~i~~~~~~-~-~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
+|+++... . .|+-.-...++++|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 45555443 3 58999999999999999999999986543
No 93
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=76.17 E-value=16 Score=32.00 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcc
Q 046582 37 MIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 37 ~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
-..|+++|.++||+|+..+....
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCC
Confidence 57899999999999998765543
No 94
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=76.08 E-value=11 Score=32.76 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 33 HLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 33 H~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
|.--+..|+++|.+. |+|+++.|....+
T Consensus 12 ~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 12 HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 344578899999988 7999999887654
No 95
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=76.08 E-value=26 Score=32.31 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhH
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQH--GAIVTIVTTPVNAARF 63 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~~~ 63 (381)
..+|+++-...-|++.-...+.+.|.++ +.+||+++...+...+
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 3579999999999999999999999997 8999999988766544
No 96
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=75.85 E-value=17 Score=31.84 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhC---CCeEEEEeCCcchh
Q 046582 35 IPMIDIARLLAQH---GAIVTIVTTPVNAA 61 (381)
Q Consensus 35 ~p~~~la~~L~~r---Gh~Vt~~t~~~~~~ 61 (381)
--+.+|++.|.+. |++|+++.|....+
T Consensus 14 ~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 14 PGLEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred HhHHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 3456677777663 47999999887654
No 97
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=75.76 E-value=39 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=24.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 27 PFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 27 ~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
+.++.|-....+.|++.|+++|.+|-++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4456789999999999999999999886
No 98
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=75.55 E-value=4.6 Score=39.01 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
-|=-.....|+++|+++||+|+++++.-
T Consensus 17 GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 17 GGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3555778999999999999999999754
No 99
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=75.37 E-value=38 Score=31.29 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=60.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHHHHHHhhhcCCCCeeE-EEecCCCcccCCCCCCCCCC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH-GAIVTIVTTPVNAARFKTVLARATQSGLQIRL-TEIQFPWKEAGLPEGCENID 99 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r-Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~ 99 (381)
+|++ -+++..|+.-+..+.++|.++ +.++.++.+............ . .++.. +.+. +... +
T Consensus 2 ~i~~-~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~----~-~~i~~~~~~~-------~~~~----~ 64 (365)
T TIGR00236 2 KVSI-VLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD----L-FHLPPDYDLN-------IMSP----G 64 (365)
T ss_pred eEEE-EEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH----h-cCCCCCeeee-------cCCC----C
Confidence 3444 345678999999999999987 667666655444333322211 0 12221 1111 1000 0
Q ss_pred CCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEEC--CCC-cchHHHHHHcCCCeEEE
Q 046582 100 MLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISD--MGH-PWTVDTAAKFNVPRIIF 158 (381)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d--~~~-~~~~~~a~~l~iP~v~~ 158 (381)
. .... ........+.+++++ .+||+|++- ... .++..+|.++|||++-+
T Consensus 65 --~--~~~~----~~~~~~~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 65 --Q--TLGE----ITSNMLEGLEELLLE--EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred --C--CHHH----HHHHHHHHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 0 1111 111222456677777 689999965 332 24667788899998754
No 100
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=74.64 E-value=37 Score=31.13 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH--GAIVTIVTTPVNAARFK 64 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~~~~ 64 (381)
+|+++-..+-|++.-...+.+.|.++ +.+|++++...+...++
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 45 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILS 45 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHh
Confidence 47888888899999999999999996 88999999887665443
No 101
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=74.11 E-value=21 Score=26.82 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARF 63 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~ 63 (381)
++++...+..-|-.-+..++..|.++||+|.++-.....+.+
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 688999999999999999999999999999998555443333
No 102
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=74.07 E-value=4.8 Score=36.57 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
..|+......++++|+++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 459999999999999999999999987644
No 103
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=73.61 E-value=33 Score=29.96 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
|||+..=-+. |.--+.+|++.|.+ +|+|+++.|....+
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 3444433332 33457788888865 67999999887654
No 104
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=73.52 E-value=47 Score=30.45 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=24.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCc
Q 046582 27 PFLAQGHLIPMIDIARLLAQH-GAIVTIVTTPV 58 (381)
Q Consensus 27 ~~~~~gH~~p~~~la~~L~~r-Gh~Vt~~t~~~ 58 (381)
-+++.....=+..|.++|.++ |+++.++.+..
T Consensus 5 ~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~ 37 (363)
T cd03786 5 VTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQ 37 (363)
T ss_pred EEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 345567777788888999987 99999775543
No 105
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=73.06 E-value=29 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=20.7
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 24 LLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 24 ~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
++.|.|- -=...+..+...+.++|++|++++
T Consensus 2 vi~aHpD-De~l~~gg~i~~~~~~g~~v~vv~ 32 (128)
T PF02585_consen 2 VIAAHPD-DEELGCGGTIAKLAEAGHRVVVVT 32 (128)
T ss_dssp EEESSTT-HHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred EEEECCC-chHHhhHHHHHHHHhcCCeEEEEE
Confidence 4555553 223466777888999999999875
No 106
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=72.77 E-value=24 Score=30.78 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCCcEEE--ECCCCc----chHHHHHHcCCCeEEEec
Q 046582 119 LPFENLFKEQTPKPCCII--SDMGHP----WTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI--~d~~~~----~~~~~a~~l~iP~v~~~~ 160 (381)
+.+++++++ .++++|| +.+|.. -+..+|+++|||++-|--
T Consensus 55 ~~l~~~l~~--~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 55 EGLAAYLRE--EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HHHHHHHHH--CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 456777777 6889877 444432 356778899999998853
No 107
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=72.51 E-value=19 Score=30.21 Aligned_cols=42 Identities=17% Similarity=0.034 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
+.++++.+.++..|-....-++..|.++|++|+.+......+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~ 123 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPE 123 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 568999999999999999999999999999998876443333
No 108
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=72.08 E-value=5.5 Score=38.43 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 32 GHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 32 gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
|=-.....|+++|+++||+|+++++.-
T Consensus 17 Gl~~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 17 GLGDVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 445667889999999999999999653
No 109
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=71.30 E-value=5.1 Score=36.52 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
..|+......|+++|.++||+|++++..
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 4688999999999999999999999743
No 110
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=71.17 E-value=45 Score=31.29 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKT 65 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~ 65 (381)
.-+++---|+-|--.-+++++..|+++| .|-+++++....+++-
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qikl 137 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKL 137 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH
Confidence 3678888899999999999999999999 9999999988776653
No 111
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=71.14 E-value=22 Score=29.80 Aligned_cols=47 Identities=13% Similarity=-0.101 Sum_probs=38.9
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKT 65 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~ 65 (381)
++.++++.+.++.-|-....-++.-|..+|++|+++....-.+.+-+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 35689999999999999999999999999999999866554444333
No 112
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=70.46 E-value=7 Score=30.11 Aligned_cols=41 Identities=22% Similarity=0.134 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARF 63 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~ 63 (381)
||++.-+++.+=.. ...+.++|.++|++|+++.++.-...+
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 67777777644444 999999999999999999776544333
No 113
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=70.34 E-value=92 Score=29.05 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFK 64 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~ 64 (381)
-+++.--|+.|-..-+++++..++++|.+|-+++.+....++.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 4667777788999999999999999999999998876655443
No 114
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=68.82 E-value=45 Score=30.82 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 29 LAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 29 ~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
..-|=-.-...+++.|.+.||+|+++++..
T Consensus 10 ~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 345777788899999999999999998654
No 115
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.69 E-value=61 Score=30.63 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=38.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARF 63 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~ 63 (381)
...|+++-.-+.|-..-...||+.|.++|+.|-++....+.+.+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 34688899999999999999999999999999999888776543
No 116
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=68.56 E-value=43 Score=30.74 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEe
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGA-IVTIVT 55 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh-~Vt~~t 55 (381)
+.+|+++-.++-| ..+|+.|++.|+ ++|++=
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD 55 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIAD 55 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEc
Confidence 4578888887655 778999999998 777763
No 117
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=68.39 E-value=14 Score=35.84 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=38.5
Q ss_pred CCCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEEeCCC
Q 046582 293 QPSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVTRVGS 335 (381)
Q Consensus 293 ~~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~~~~~ 335 (381)
+++.|||+||+...++.++-+..-.+-|+..|-.|+|-...++
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~ 469 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD 469 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4567999999999999999999999999999999999988753
No 118
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=67.96 E-value=38 Score=31.19 Aligned_cols=37 Identities=3% Similarity=0.002 Sum_probs=26.3
Q ss_pred EEEEEcCC--C-CCCHHHHHHHHHHHHhC--CCeEEEEeCCc
Q 046582 22 HFLLLPFL--A-QGHLIPMIDIARLLAQH--GAIVTIVTTPV 58 (381)
Q Consensus 22 ~i~~~~~~--~-~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~ 58 (381)
||+++... . -|=-.-+..++++|.++ ||+|+++++..
T Consensus 2 kI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~ 43 (359)
T PRK09922 2 KIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRND 43 (359)
T ss_pred eeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCC
Confidence 45554432 2 34457789999999999 89999887654
No 119
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=67.88 E-value=43 Score=30.78 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH--GAIVTIVTTPVNAARFK 64 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~~~~ 64 (381)
+|+++-..+-|++.-...+.+.|.++ +.+||+++.......++
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 46 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLS 46 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHh
Confidence 58888889999999999999999996 89999999876655443
No 120
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=67.83 E-value=10 Score=31.77 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
+||+..=-+. +.--+..|+++|.+.||+|+++.|....+
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 4555555444 55568889999988889999999887754
No 121
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=67.52 E-value=36 Score=31.08 Aligned_cols=38 Identities=16% Similarity=0.440 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCCcEEEECCCCc--chHHHHHHcCCCeEEEe
Q 046582 120 PFENLFKEQTPKPCCIISDMGHP--WTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 120 ~l~~ll~~~~~~~DlvI~d~~~~--~~~~~a~~l~iP~v~~~ 159 (381)
.+..++++ .++|+|.+..... .+..+++++|+|.+...
T Consensus 73 ~~~~~~~~--~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~ 112 (367)
T cd05844 73 QLRRLLRR--HRPDLVHAHFGFDGVYALPLARRLGVPLVVTF 112 (367)
T ss_pred HHHHHHHh--hCCCEEEeccCchHHHHHHHHHHcCCCEEEEE
Confidence 34446666 6899998754332 44566788999987643
No 122
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=67.23 E-value=5.8 Score=37.21 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=24.8
Q ss_pred cCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 27 PFL-AQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 27 ~~~-~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
|+| ..|.-.=..+++++|+++ |+||+++...
T Consensus 9 P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 9 PYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 444 348888899999999876 9999998654
No 123
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=67.11 E-value=41 Score=27.82 Aligned_cols=100 Identities=10% Similarity=0.188 Sum_probs=48.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCcchh-hHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH--GAIVTIVTTPVNAA-RFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENI 98 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 98 (381)
.++-+-..+-|=++-...|+++|.++ |++|.+-++..... .+.+.. .+.+....+|.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~------~~~v~~~~~P~D------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL------PDRVDVQYLPLD------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-------GGG-SEEE---S-------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC------CCCeEEEEeCcc-------------
Confidence 56666677789999999999999997 88877765543332 232221 012333333321
Q ss_pred CCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEE-ECC-CCcchHHHHHHcCCCeEEEec
Q 046582 99 DMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCII-SDM-GHPWTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI-~d~-~~~~~~~~a~~l~iP~v~~~~ 160 (381)
+...++.+++. .++|++| ++. +.+..+..|++.|||.+.+..
T Consensus 83 ------------------~~~~~~rfl~~--~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ------------------FPWAVRRFLDH--WRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------------------SHHHHHHHHHH--H--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------------------CHHHHHHHHHH--hCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 01234555655 4677766 665 334556678889999988754
No 124
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=66.79 E-value=9.2 Score=34.24 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
..|+...+..+++.|.++||+|++++....
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 568999999999999999999999986644
No 125
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=66.69 E-value=11 Score=28.72 Aligned_cols=38 Identities=5% Similarity=-0.162 Sum_probs=23.5
Q ss_pred EEEEEcCCCCC---CHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 22 HFLLLPFLAQG---HLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 22 ~i~~~~~~~~g---H~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
+|+|+--|-.+ .-.--.+++.+-++|||+|.++.+...
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 45555555322 223467889999999999999976644
No 126
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=66.60 E-value=38 Score=29.52 Aligned_cols=39 Identities=10% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCCCcEEE--ECCCCc----chHHHHHHcCCCeEEEe
Q 046582 119 LPFENLFKEQTPKPCCII--SDMGHP----WTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI--~d~~~~----~~~~~a~~l~iP~v~~~ 159 (381)
+.+.+++++ .++++|| +.+|.. -+..+|+++|||.+-|-
T Consensus 56 ~~l~~~l~~--~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 56 EGLAEFLRE--NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHHHh--CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 456777777 6888887 444432 35677889999998874
No 127
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=65.74 E-value=41 Score=31.76 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
++--|..+.|-....+.|++.|.+||++|.-+
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 45556678899999999999999999999855
No 128
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=65.49 E-value=80 Score=26.36 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.++++-..+-|-..-...||..+..+|.+|.+++...+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 35566666779999999999999999999999997765
No 129
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=65.01 E-value=1.1e+02 Score=29.80 Aligned_cols=46 Identities=7% Similarity=-0.042 Sum_probs=39.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTV 66 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~ 66 (381)
.-+++.-.|+.|-..-.++++.+.+++|..|.+++.+.....+...
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 4678888889999999999999999999999999998887765543
No 130
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=65.00 E-value=14 Score=25.68 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
-++++..+...|..-+..+|+.|+++|..|...
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 466667777799999999999999999998755
No 131
>PRK14099 glycogen synthase; Provisional
Probab=64.62 E-value=12 Score=36.38 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=31.0
Q ss_pred CCcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 19 SQFHFLLLPFL------AQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 19 ~~~~i~~~~~~------~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
++++|++++.- .-|=-..+..|.++|+++||+|.+++|.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 35678887654 2356678899999999999999999875
No 132
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=64.40 E-value=94 Score=29.60 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
..|+++-.++.|-..-...||..|.++|++|.+++...+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3577888889999999999999999999999999887665
No 133
>PRK10867 signal recognition particle protein; Provisional
Probab=64.36 E-value=89 Score=29.82 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhh
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQH-GAIVTIVTTPVNAAR 62 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~r-Gh~Vt~~t~~~~~~~ 62 (381)
..|+++-.++.|-..-...||..|+++ |+.|.+++...+...
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 457788888999999999999999999 999999988766543
No 134
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=64.05 E-value=82 Score=29.07 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 046582 35 IPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 35 ~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
.-...|+++|.++ |+|++++..
T Consensus 20 ~~v~~l~~~l~~~-~~v~v~~~~ 41 (388)
T TIGR02149 20 VHVEELTRELARL-MDVDVRCFG 41 (388)
T ss_pred HHHHHHHHHHHHh-cCeeEEcCC
Confidence 5577999999987 888887654
No 135
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=63.79 E-value=1.2e+02 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.2
Q ss_pred EEEEE-cCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 22 HFLLL-PFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 22 ~i~~~-~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
++++. +..+.|-..-...|++.|+++|++|..+=+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 45555 445568999999999999999999998844
No 136
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=63.70 E-value=59 Score=30.32 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=24.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC-CC--eEEEE
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQH-GA--IVTIV 54 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~r-Gh--~Vt~~ 54 (381)
+++....+.||..--.+|.++|.++ |. +|+++
T Consensus 2 lils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~ 36 (382)
T PLN02605 2 LILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIV 36 (382)
T ss_pred EEEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 4455566789999999999999875 54 55554
No 137
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=63.51 E-value=13 Score=32.60 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=38.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKT 65 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~ 65 (381)
..+++.-.++.|-..-..+|+.+|.++|+.|++++.......++.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 368888888888888899999999999999999998877665544
No 138
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=63.17 E-value=92 Score=28.62 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=24.9
Q ss_pred EEcCCC-CCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 25 LLPFLA-QGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 25 ~~~~~~-~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
+++... .|--+-+..|++.|.++||++++++.
T Consensus 7 ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~ 39 (374)
T TIGR03088 7 VVYRFDVGGLENGLVNLINHLPADRYRHAVVAL 39 (374)
T ss_pred EeCCCCCCcHHHHHHHHHhhccccccceEEEEc
Confidence 444444 45569999999999999999988864
No 139
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=62.84 E-value=41 Score=28.56 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=37.8
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARF 63 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~ 63 (381)
++.++++.+.++..|-.-..-++..|..+|++|+++....-.+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 356899999999999999999999999999999999655444333
No 140
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=62.71 E-value=59 Score=26.31 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEE-EEeCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVT-IVTTP 57 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt-~~t~~ 57 (381)
.++|++.-.|+.|-..-.+.+++.|.++|++|- ++|++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 368999999999999999999999999999997 45554
No 141
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.48 E-value=8.7 Score=31.79 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=22.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
|=+++..+.|.. -..||+++..||++||++....
T Consensus 20 VR~ItN~SSG~~--G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 20 VRFITNRSSGKM--GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp SEEEEES--SHH--HHHHHHHHHHTT-EEEEEE-TT
T ss_pred ceEecCCCcCHH--HHHHHHHHHHCCCEEEEEecCc
Confidence 445555666654 3578999999999999998774
No 142
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=61.68 E-value=8.6 Score=33.46 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 32 GHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 32 gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
|=-.....|+++|+++||+|++++|.-
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 445678899999999999999999864
No 143
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.37 E-value=1.2e+02 Score=27.63 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
...++++-.-+.|-..-...||+.|.+.|+.|-+....-+..
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA 180 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA 180 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH
Confidence 345788888899999999999999999999999998776643
No 144
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=61.01 E-value=1.1e+02 Score=29.15 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhh
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLA-QHGAIVTIVTTPVNAAR 62 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~-~rGh~Vt~~t~~~~~~~ 62 (381)
..++++..++.|-..-...||..|. ++|.+|.+++...+...
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 3577888889999999999999997 68999999988866543
No 145
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=60.46 E-value=8.8 Score=31.55 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 046582 38 IDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 38 ~~la~~L~~rGh~Vt~~t~~ 57 (381)
..|+++..+|||+||-++-.
T Consensus 14 s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 14 SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred HHHHHHHHhCCCeeEEEEeC
Confidence 46899999999999988643
No 146
>PRK06321 replicative DNA helicase; Provisional
Probab=59.99 E-value=1.7e+02 Score=28.34 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCcchhhH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQ-HGAIVTIVTTPVNAARF 63 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~-rGh~Vt~~t~~~~~~~~ 63 (381)
-+++..-|+.|-....+.+|...+. .|..|-+++.+-....+
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 5678888899999999999999984 59999999888665543
No 147
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.92 E-value=47 Score=25.21 Aligned_cols=40 Identities=23% Similarity=0.078 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
|+++.+.++..|-.-..-++.-|..+|++|..+......+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e 40 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPE 40 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 5789999999999999999999999999999987654433
No 148
>PRK11823 DNA repair protein RadA; Provisional
Probab=59.90 E-value=1.6e+02 Score=28.32 Aligned_cols=43 Identities=23% Similarity=0.199 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFK 64 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~ 64 (381)
-+++.--|+.|-..-+++++..++++|.+|.+++.+.....+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 5677778889999999999999999999999999887665543
No 149
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=59.57 E-value=93 Score=29.05 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=22.1
Q ss_pred CCCcEEE-ECCCCc--chHHHHHHcCCC--eEEEecc
Q 046582 130 PKPCCII-SDMGHP--WTVDTAAKFNVP--RIIFHGF 161 (381)
Q Consensus 130 ~~~DlvI-~d~~~~--~~~~~a~~l~iP--~v~~~~~ 161 (381)
.++|++| .|.-.+ -....+++.|++ ++.+.+.
T Consensus 81 ~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~P 117 (373)
T PF02684_consen 81 EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISP 117 (373)
T ss_pred cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECC
Confidence 5899988 888433 455667788888 6655443
No 150
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=59.49 E-value=15 Score=33.27 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
..|.-.-...++++|.++||+|++++.....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4588899999999999999999999876543
No 151
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.91 E-value=19 Score=28.29 Aligned_cols=39 Identities=26% Similarity=0.116 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
.+++|++.+.+..||-.=..-+++.|++.|.+|......
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~ 49 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLF 49 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCc
Confidence 578999999999999999999999999999999876543
No 152
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=58.78 E-value=15 Score=30.65 Aligned_cols=38 Identities=13% Similarity=-0.078 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCCCHHH-HHHHHHHHHhCCCeEEEEeCCcc
Q 046582 21 FHFLLLPFLAQGHLIP-MIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p-~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.+|++.-+++ +...- ...++++|.++||+|+++.++.-
T Consensus 6 k~IllgVTGs-iaa~k~a~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 6 KRIGFGLTGS-HCTYDEVMPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred CEEEEEEcCH-HHHHHHHHHHHHHHHhCcCEEEEEECHhH
Confidence 4677776665 55555 68999999999999999877643
No 153
>PLN02316 synthase/transferase
Probab=58.58 E-value=28 Score=37.04 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=30.3
Q ss_pred CcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 20 QFHFLLLPFL------AQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 20 ~~~i~~~~~~------~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.++|++++.- .-|=-.....|+++|+++||+|.++++...
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 4688877642 224446678999999999999999998643
No 154
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=58.56 E-value=62 Score=30.07 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCCcEEEE--CCCCc-chHHHHHHcCCCeEEE
Q 046582 118 QLPFENLFKEQTPKPCCIIS--DMGHP-WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 118 ~~~l~~ll~~~~~~~DlvI~--d~~~~-~~~~~a~~l~iP~v~~ 158 (381)
...+.+++++ .+||+||+ |.+.. ++..+|.++|||++-+
T Consensus 82 ~~~~~~~~~~--~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hv 123 (365)
T TIGR03568 82 IIGFSDAFER--LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHI 123 (365)
T ss_pred HHHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEE
Confidence 3456777777 68999884 44444 5567788999999854
No 155
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.28 E-value=1.3e+02 Score=28.52 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=35.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
..|+++-..+.|-..-...||.+|..+|.+|.+++...+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677888888999999999999999999999999877653
No 156
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=55.83 E-value=74 Score=28.03 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCcchhhHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHG--AIVTIVTTPVNAARFK 64 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rG--h~Vt~~t~~~~~~~~~ 64 (381)
+|+++-..+-|++.-...+.++|.++. -+||+++.......++
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 478888889999999999999999974 7999999886665443
No 157
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=55.25 E-value=1.5e+02 Score=26.23 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=33.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
..++++..++.|-..-...||..|+++|++|.++....+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 356677788889999999999999999999999987754
No 158
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=54.78 E-value=22 Score=28.08 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=29.6
Q ss_pred CcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEE
Q 046582 295 SSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVT 331 (381)
Q Consensus 295 ~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~ 331 (381)
..+|.|++||+-....++++++++.+. .+.+++|.-
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~ 86 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVN 86 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEE
Confidence 349999999999988888999999885 357888864
No 159
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=54.23 E-value=22 Score=30.43 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 33 HLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 33 H~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
|+.-|.+.|++|.++|++|+++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999766
No 160
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=53.92 E-value=55 Score=30.81 Aligned_cols=31 Identities=13% Similarity=-0.171 Sum_probs=22.1
Q ss_pred CCCcEEEECCCCcchHHHHHHcCCCeEEEecc
Q 046582 130 PKPCCIISDMGHPWTVDTAAKFNVPRIIFHGF 161 (381)
Q Consensus 130 ~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~ 161 (381)
.++|+||.=--+. ....|...|+|.+++.+.
T Consensus 92 ~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~ 122 (396)
T TIGR03492 92 KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTA 122 (396)
T ss_pred hcCCEEEEECcHH-HHHHHHHcCCCceEEEee
Confidence 3789988443223 677788889999887554
No 161
>PRK06849 hypothetical protein; Provisional
Probab=53.73 E-value=1.5e+02 Score=27.73 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.+|++.-.. ...-+.+++.|.++||+|+++.....
T Consensus 5 ~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 5 KTVLITGAR----APAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 456666332 23578999999999999999866543
No 162
>PRK05636 replicative DNA helicase; Provisional
Probab=53.41 E-value=1.4e+02 Score=29.20 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=34.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCcchhhH
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLA-QHGAIVTIVTTPVNAARF 63 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~-~rGh~Vt~~t~~~~~~~~ 63 (381)
--+++..-|+.|-....+.+|...+ ++|..|.+++.+-....+
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 3567788889999999999999887 458899899887665543
No 163
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.32 E-value=1.9e+02 Score=26.72 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=44.5
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecC
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQF 84 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 84 (381)
++.|++++..+.-||.-=|.-=|.-|++.|.+|+++......+. ++.. ..++|+++.++.
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~l~-----~hprI~ih~m~~ 70 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EELL-----NHPRIRIHGMPN 70 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HHHh-----cCCceEEEeCCC
Confidence 35688888888889998899999999999999999865443221 1221 235899998863
No 164
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=52.40 E-value=27 Score=26.84 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=29.0
Q ss_pred cEEEEeeCCCcCCChhhHHHHHHHHhh-CC-CCEEEEEeC
Q 046582 296 SVVYVCLGSICNLKSSQLIELGLGLEA-SK-KPFIWVTRV 333 (381)
Q Consensus 296 svIyvSfGS~~~~~~~~~~~l~~al~~-~~-~~~lW~~~~ 333 (381)
+++.++|||...-..+.+..+.+.+++ .+ ..|-|.+-.
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999998555667888888854 44 588898863
No 165
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=52.05 E-value=1.9e+02 Score=27.93 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFK 64 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~ 64 (381)
-+++.--|+.|-..-+++++..++++|.+|.+++.+....++.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 5677777889999999999999999999999999887655443
No 166
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=51.92 E-value=1.4e+02 Score=24.86 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
.+-.|.+.+..+.|-....+.+|-+.+.+|++|.++-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3567999999999999999999999999999999874
No 167
>PLN02939 transferase, transferring glycosyl groups
Probab=51.83 E-value=28 Score=36.51 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=31.5
Q ss_pred CCcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 19 SQFHFLLLPFL------AQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 19 ~~~~i~~~~~~------~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
+.++|++++.- .-|=-.....|.++|+++||+|.+++|.-
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45788887653 23555788899999999999999999854
No 168
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=51.70 E-value=12 Score=29.95 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCc
Q 046582 38 IDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 38 ~~la~~L~~rGh~Vt~~t~~~ 58 (381)
.++|..|+++||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 478999999999999998764
No 169
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=51.63 E-value=77 Score=28.82 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH--GAIVTIVTTPVNAARF 63 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~~~ 63 (381)
+|+++-..+-|++.-...+.+.|.++ +.+||+++.......+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~ 44 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLL 44 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHH
Confidence 47888888899999999999999996 8999999976554443
No 170
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=51.16 E-value=37 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=21.3
Q ss_pred cEEEEeeCCCcCCChhhHHHHHHHHhhCC
Q 046582 296 SVVYVCLGSICNLKSSQLIELGLGLEASK 324 (381)
Q Consensus 296 svIyvSfGS~~~~~~~~~~~l~~al~~~~ 324 (381)
-.+|+|+||+..-+.+.++...+.|++.+
T Consensus 8 ~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 8 ALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 37899999999755666666666676644
No 171
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=51.05 E-value=20 Score=23.91 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 046582 38 IDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 38 ~~la~~L~~rGh~Vt~~t~~ 57 (381)
+..|..|+++|++|+++--.
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56788999999999999533
No 172
>PRK05920 aromatic acid decarboxylase; Validated
Probab=50.32 E-value=33 Score=28.86 Aligned_cols=40 Identities=15% Similarity=0.006 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
.+|++.-+++ +...=...+.++|.+.||+|+++.+..-..
T Consensus 4 krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A~~ 43 (204)
T PRK05920 4 KRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAAQK 43 (204)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 4677666665 555788899999999999999998765433
No 173
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=49.86 E-value=89 Score=22.03 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 046582 37 MIDIARLLAQHGAIVTIVTTPVNAARFKT 65 (381)
Q Consensus 37 ~~~la~~L~~rGh~Vt~~t~~~~~~~~~~ 65 (381)
++.+++.|++.|+++ +.+...+..+++
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHH
Confidence 468899999999987 344444544433
No 174
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=49.68 E-value=23 Score=29.38 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
+|++.-+++.|=+.-...+.++|.++|++|+++.+..
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 4666666655555555699999999999999887664
No 175
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=48.97 E-value=34 Score=32.89 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=44.3
Q ss_pred CCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEEeCCCchhhhhhccchhhHHH-HhCCCceEecCcchhHHhh
Q 046582 294 PSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVTRVGSKLEELEKWLVEENFEE-RIKGTGLLIRGWAPQVMIL 370 (381)
Q Consensus 294 ~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~~~~W~PQ~~vL 370 (381)
++.|+|-||.+..+++++.+...++-|++.|...||-.+.+....+ . +-.-+.+ .+..+-++...+.|+.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~--~--l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEA--R--LRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHH--H--HHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHH--H--HHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 4569999999999999999999999999999999999876643211 1 2111211 1123345556777776655
No 176
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=48.86 E-value=2.4e+02 Score=27.10 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=25.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 27 PFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 27 ~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
+....|-......|++.|.++|++|..+=+
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 444568899999999999999999998843
No 177
>PRK14098 glycogen synthase; Provisional
Probab=48.80 E-value=33 Score=33.39 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=29.6
Q ss_pred cEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 21 FHFLLLPFL------AQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 21 ~~i~~~~~~------~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
++|++++.- .-|=-..+..|.++|+++||+|.++.|.
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 577777654 2355678899999999999999999875
No 178
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=48.68 E-value=1.1e+02 Score=22.59 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCCChhHHHHHH
Q 046582 32 GHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLPSIDLASKFF 111 (381)
Q Consensus 32 gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (381)
++-.-+..+++.|.+.|+++ ++++..+..+++. ++....+.. ...
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~~---------gi~~~~v~~------~~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYLQEA---------GIPVEVVNK------VSE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHHHHc---------CCeEEEEee------cCC------------------
Confidence 46667889999999999987 3445555444432 555444321 110
Q ss_pred HHHHhcHHHHHHHHhhcCCCCcEEEECCC-------CcchHHHHHHcCCCeEE
Q 046582 112 NSLSMLQLPFENLFKEQTPKPCCIISDMG-------HPWTVDTAAKFNVPRII 157 (381)
Q Consensus 112 ~~~~~~~~~l~~ll~~~~~~~DlvI~d~~-------~~~~~~~a~~l~iP~v~ 157 (381)
-...+.+++++ .++|+||.-.- .+.....|-.+|||.+.
T Consensus 55 -----~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -----GRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -----CchhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 01234555555 68999997432 23445668889999874
No 179
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=48.35 E-value=33 Score=31.03 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
.+--..+..+++.|.++||+|++++...
T Consensus 11 ~~~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 11 RLSETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred CcchHHHHHHHHHHHhCCCeEEEEEecC
Confidence 3456778999999999999999998653
No 180
>PRK09165 replicative DNA helicase; Provisional
Probab=48.20 E-value=1.9e+02 Score=28.21 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC---------------CCeEEEEeCCcchhhHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH---------------GAIVTIVTTPVNAARFK 64 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r---------------Gh~Vt~~t~~~~~~~~~ 64 (381)
-+++..-|+.|-....+.+|...+.+ |..|.+++.+-....+.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 57788888999999999999988854 78899999887765543
No 181
>PRK07773 replicative DNA helicase; Validated
Probab=48.14 E-value=1.9e+02 Score=30.72 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHH
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQH-GAIVTIVTTPVNAARFK 64 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~r-Gh~Vt~~t~~~~~~~~~ 64 (381)
--+++..-|+.|-....+++|...+.+ |..|.+++.+.....+.
T Consensus 218 ~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 218 QLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 357788888999999999999999865 88999999887765543
No 182
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.80 E-value=1.8e+02 Score=27.30 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
.-|+|+-.-+.|-..-...+|..+.++|+.+-++....+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 4677888889999999999999999999999998776554
No 183
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=47.74 E-value=27 Score=31.63 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
.|--.-...|+++|+++||+|++++...
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 4778889999999999999999997543
No 184
>PRK14974 cell division protein FtsY; Provisional
Probab=47.74 E-value=2.3e+02 Score=26.08 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
..++++-.++.|-..-...||..|.++|++|.+++...+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 467888888999999999999999999999999876644
No 185
>PRK00784 cobyric acid synthase; Provisional
Probab=46.84 E-value=2.1e+02 Score=27.92 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=27.9
Q ss_pred EEEEE-cCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 22 HFLLL-PFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 22 ~i~~~-~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
.+++. +-..-|-......|++.|.++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 35555 445579999999999999999999987644
No 186
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.82 E-value=37 Score=33.60 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=39.6
Q ss_pred CCcEEEEeeCCCcCCChhhHHHHHHHHhhCCCCEEEEEeCCCch
Q 046582 294 PSSVVYVCLGSICNLKSSQLIELGLGLEASKKPFIWVTRVGSKL 337 (381)
Q Consensus 294 ~~svIyvSfGS~~~~~~~~~~~l~~al~~~~~~~lW~~~~~~~~ 337 (381)
++.|||-+|--..+++++.++..++-|...|-.+||..+.+...
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g 800 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG 800 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc
Confidence 45699999999999999999999999999999999999987543
No 187
>PRK12342 hypothetical protein; Provisional
Probab=46.69 E-value=46 Score=29.16 Aligned_cols=39 Identities=8% Similarity=-0.060 Sum_probs=27.6
Q ss_pred HHHHHhhcCCCCcEEEECCCCc------chHHHHHHcCCCeEEEecc
Q 046582 121 FENLFKEQTPKPCCIISDMGHP------WTVDTAAKFNVPRIIFHGF 161 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~------~~~~~a~~l~iP~v~~~~~ 161 (381)
+.+.++. ..||+|++.--.. -+..+|+.||+|++.+...
T Consensus 101 La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 101 LAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 4444444 3599999765443 4788999999999887543
No 188
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=46.41 E-value=2.1e+02 Score=25.42 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 046582 38 IDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 38 ~~la~~L~~rGh~Vt~~t~~ 57 (381)
.+|..+|.+.||+||++|=.
T Consensus 12 ~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcC
Confidence 57888999999999999844
No 189
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=45.89 E-value=1.8e+02 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcCCCCcEEE-ECCCCc--chHHHHHHcC--CCeEEEecchHH
Q 046582 118 QLPFENLFKEQTPKPCCII-SDMGHP--WTVDTAAKFN--VPRIIFHGFSCF 164 (381)
Q Consensus 118 ~~~l~~ll~~~~~~~DlvI-~d~~~~--~~~~~a~~l~--iP~v~~~~~~~~ 164 (381)
++.++.++++ ++|++| .|.-.+ -...-.++.| +|.|-+.+.+.+
T Consensus 75 ~~~~~~i~~~---kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVW 123 (381)
T COG0763 75 RELVRYILAN---KPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVW 123 (381)
T ss_pred HHHHHHHHhc---CCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECccee
Confidence 3445555554 899988 887443 2333345666 898877555443
No 190
>PRK09620 hypothetical protein; Provisional
Probab=45.23 E-value=41 Score=28.94 Aligned_cols=33 Identities=24% Similarity=0.082 Sum_probs=24.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
|=+++..+.|.+- ..||++|.++|++|+++...
T Consensus 20 VR~itN~SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 20 VRGHTNMAKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred eeEecCCCcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 4455666666654 67899999999999999654
No 191
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=45.20 E-value=1.8e+02 Score=24.14 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=43.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe---CCcchhhHHHHHHhhhcCCCCeeEEEec
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT---TPVNAARFKTVLARATQSGLQIRLTEIQ 83 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t---~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 83 (381)
..|+|+..++.-|-.-+..+++.|++.|.+|.++. ...+.++++...... ..+.+-+++.+|
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~-~~~~~s~~~~~~ 173 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV-NGKDGSHLVSVP 173 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh-cCCCCceEEEeC
Confidence 34888888888887778899999999999999885 334555555554322 122345666665
No 192
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=45.10 E-value=22 Score=27.36 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=19.9
Q ss_pred EEEeeCCCcCCChhhHHHHHHHHhhCCCCE
Q 046582 298 VYVCLGSICNLKSSQLIELGLGLEASKKPF 327 (381)
Q Consensus 298 IyvSfGS~~~~~~~~~~~l~~al~~~~~~~ 327 (381)
+|+|+||+..-+.+.++...+.|++.+..+
T Consensus 1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~~~i 30 (127)
T TIGR01498 1 AYIALGSNLGDRLKNLRAALAALAALPVRL 30 (127)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHhcCCcce
Confidence 599999998755555666666666544333
No 193
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=45.07 E-value=1.9e+02 Score=24.39 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=25.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 27 PFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 27 ~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
+....|-......|++.|.++|++|-++=
T Consensus 7 t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 7 TDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 44567999999999999999999998764
No 194
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=44.96 E-value=57 Score=30.07 Aligned_cols=45 Identities=7% Similarity=-0.043 Sum_probs=28.3
Q ss_pred HHHHHHHhhcCCCCcEEE-ECCCCc--chHHHHHHc--CCCeEEEecchHH
Q 046582 119 LPFENLFKEQTPKPCCII-SDMGHP--WTVDTAAKF--NVPRIIFHGFSCF 164 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI-~d~~~~--~~~~~a~~l--~iP~v~~~~~~~~ 164 (381)
..++++.+.. .++|++| .|.-.+ .....+++. |||++.+.+...+
T Consensus 65 ~~~~~~~~~~-~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~PqvW 114 (347)
T PRK14089 65 KAIKEMVELA-KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQVW 114 (347)
T ss_pred HHHHHHHHHh-cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccce
Confidence 3344444432 5899988 788433 455566777 7999887655443
No 195
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=44.90 E-value=48 Score=33.51 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
+..|+|.|.|- --..-|.....+|+++||+|+++.
T Consensus 370 ~rvLv~spHPD-Devi~~GGTlarl~~~G~~V~vv~ 404 (652)
T PRK02122 370 KRVIIFSPHPD-DDVISMGGTFRRLVEQGHDVHVAY 404 (652)
T ss_pred ceEEEEEeCCC-chHhhhHHHHHHHHHCCCcEEEEE
Confidence 34677888885 688899999999999999999873
No 196
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.10 E-value=1.4e+02 Score=23.23 Aligned_cols=42 Identities=10% Similarity=-0.037 Sum_probs=35.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAAR 62 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~ 62 (381)
.+|++.+..+.+|-.=-.-++..|.++|++|..+......+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~ 43 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEE 43 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 478999999999999999999999999999998865544443
No 197
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=43.61 E-value=47 Score=26.79 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=26.5
Q ss_pred cHHHHHHHHhhcCCCCcEEEECCCCcchH--H-HHH--Hc-CCCeEEEec
Q 046582 117 LQLPFENLFKEQTPKPCCIISDMGHPWTV--D-TAA--KF-NVPRIIFHG 160 (381)
Q Consensus 117 ~~~~l~~ll~~~~~~~DlvI~d~~~~~~~--~-~a~--~l-~iP~v~~~~ 160 (381)
+.+.+.+++++ .+||+||+-..+.... . +-+ .+ ++|.+.+.+
T Consensus 77 ~~~~l~~~l~~--~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 77 FARRLIRLLRE--FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHhh--cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 44567888888 7999999887664322 2 212 23 467665544
No 198
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=42.88 E-value=40 Score=27.66 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
+|++.-+++ +...-...+.++|.++|++|.++.+..-
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHH
Confidence 466666665 5566667999999999999999877643
No 199
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=42.81 E-value=59 Score=29.75 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcc-------h---HHHHHHcCCCeEEE
Q 046582 119 LPFENLFKEQTPKPCCIISDMGHPW-------T---VDTAAKFNVPRIIF 158 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI~d~~~~~-------~---~~~a~~l~iP~v~~ 158 (381)
+.+.++++. .++|++|+-+.+.. + ..+.++++||.+.-
T Consensus 70 ~~i~~mv~~--~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 70 KKILEMVKK--LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHh--cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 445556666 69999999997752 1 23556899999875
No 200
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=42.42 E-value=2.2e+02 Score=26.17 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGA-IVTIVTT 56 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh-~Vt~~t~ 56 (381)
+.+|+++-.++-| ..+++.|+..|. +++++=.
T Consensus 24 ~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (339)
T PRK07688 24 EKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDR 56 (339)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeC
Confidence 4578888887655 567888999998 7887744
No 201
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=42.40 E-value=50 Score=28.57 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
-+++.|.|- -=..-+......|+++||+|++++
T Consensus 13 vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~ 45 (237)
T COG2120 13 VLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVC 45 (237)
T ss_pred EEEEecCCc-chhhccHHHHHHHHHCCCeEEEEE
Confidence 456667764 444667778888899999999885
No 202
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=41.85 E-value=33 Score=28.27 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
+|++.-+++.| ..-...+.++|.++|++|.++.+..-.+
T Consensus 3 ~Ill~vtGsia-a~~~~~li~~L~~~g~~V~vv~T~~A~~ 41 (182)
T PRK07313 3 NILLAVSGSIA-AYKAADLTSQLTKRGYQVTVLMTKAATK 41 (182)
T ss_pred EEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 57777666644 4458999999999999999987765433
No 203
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.41 E-value=2.6e+02 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=30.3
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 22 HFLLLPF-LAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 22 ~i~~~~~-~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
|++++.. ++-|-..--.++|-.|++.|.+|-++++++-+.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 5555544 566898888999999999998877777766543
No 204
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=41.02 E-value=2.5e+02 Score=24.59 Aligned_cols=40 Identities=20% Similarity=0.090 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
.-+++.-.|+.|-....++++.+.+++|..|.+++.+...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 3577788889999999999999999999999999887533
No 205
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=40.75 E-value=45 Score=22.85 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCc
Q 046582 36 PMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 36 p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
.-+.+|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 34688999999999999997543
No 206
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=40.66 E-value=61 Score=28.40 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=27.6
Q ss_pred HHHHHhhcCCCCcEEEECCCCc------chHHHHHHcCCCeEEEecc
Q 046582 121 FENLFKEQTPKPCCIISDMGHP------WTVDTAAKFNVPRIIFHGF 161 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~------~~~~~a~~l~iP~v~~~~~ 161 (381)
+.+.++. ..||||++-.-.. -+..+|+.||+|++.+...
T Consensus 104 La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 4444444 3699999765432 4678999999999887543
No 207
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=40.52 E-value=43 Score=26.22 Aligned_cols=21 Identities=38% Similarity=0.246 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCc
Q 046582 38 IDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 38 ~~la~~L~~rGh~Vt~~t~~~ 58 (381)
.-+|..|+++||+|++++...
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHHCCCceEEEEccc
Confidence 357889999999999998665
No 208
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=40.28 E-value=91 Score=23.31 Aligned_cols=39 Identities=21% Similarity=-0.001 Sum_probs=31.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
++....++..|......++..|.++|++|.++.......
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~ 40 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPE 40 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHH
Confidence 566677778999999999999999999999886554433
No 209
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=40.26 E-value=42 Score=28.38 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
-|++.-+|+.|-...-..||++|.+++|+|-.++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 46677788999999999999999999999876654
No 210
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=40.03 E-value=4e+02 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=28.9
Q ss_pred EEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 22 HFLLLPF-LAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 22 ~i~~~~~-~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
.|++.++ ...|-....+.|++.|.++|.+|.++=|.
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi 40 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPI 40 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCc
Confidence 3555544 45799999999999999999999988543
No 211
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=39.40 E-value=3.2e+02 Score=26.97 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=24.4
Q ss_pred CCCcEEEECCCCcchHHHHHHcCCCeEEEecc
Q 046582 130 PKPCCIISDMGHPWTVDTAAKFNVPRIIFHGF 161 (381)
Q Consensus 130 ~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~ 161 (381)
.++++||.|.. +..+|+++|++.|.+.+.
T Consensus 144 ~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 144 RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 48999999974 568999999999988664
No 212
>PLN00016 RNA-binding protein; Provisional
Probab=39.14 E-value=41 Score=31.34 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
.+|++...-+-|+=.--..|+++|.++||+|+.++-.
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 3577763333344444567889999999999988743
No 213
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=39.00 E-value=2.1e+02 Score=27.63 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=29.8
Q ss_pred cHHHHHHHHhhcCCCCcEEEECCCCcc-----------hHHHHHHcCCCeEEEe
Q 046582 117 LQLPFENLFKEQTPKPCCIISDMGHPW-----------TVDTAAKFNVPRIIFH 159 (381)
Q Consensus 117 ~~~~l~~ll~~~~~~~DlvI~d~~~~~-----------~~~~a~~l~iP~v~~~ 159 (381)
+...+.+.++...+.+|+|+.+.+.++ ...+|+..++|++.+.
T Consensus 111 l~~~v~~s~~~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~dapvILV~ 164 (486)
T COG1492 111 LWVAVKESLERLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIADAPVILVG 164 (486)
T ss_pred HHHHHHHHHHHhhhcccEEEEecCCChhhcCcccccccceeeehhcCCCEEEEE
Confidence 344455555544468999999998764 3567788888988764
No 214
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.86 E-value=54 Score=26.77 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCc-c-hHHHHHHcCCCeEEEe
Q 046582 119 LPFENLFKEQTPKPCCIISDMGHP-W-TVDTAAKFNVPRIIFH 159 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI~d~~~~-~-~~~~a~~l~iP~v~~~ 159 (381)
..++++++. +||+||...... . ....-++.|||++.+.
T Consensus 60 ~n~E~ll~l---~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVAL---KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhcc---CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 457888876 899999754332 2 4444568899988874
No 215
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=38.84 E-value=1.7e+02 Score=27.26 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=58.0
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCC-CeEEEEeCCcch--hhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCCCCCCC
Q 046582 26 LPFLAQGHLIPMIDIARLLAQHG-AIVTIVTTPVNA--ARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCENIDMLP 102 (381)
Q Consensus 26 ~~~~~~gH~~p~~~la~~L~~rG-h~Vt~~t~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (381)
+-++++=-+.=|..|.++|.+.+ .+..++.+..+. ......... .++.. | .. .+.- ...
T Consensus 8 ~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~-----~~i~~---p--dy--~L~i----~~~-- 69 (383)
T COG0381 8 TIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLEL-----FGIRK---P--DY--DLNI----MKP-- 69 (383)
T ss_pred EEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHH-----hCCCC---C--Cc--chhc----ccc--
Confidence 33556778889999999999987 676666554443 222221100 01211 1 00 0000 000
Q ss_pred ChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEE--CCCCc-chHHHHHHcCCCeEEE
Q 046582 103 SIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIIS--DMGHP-WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~--d~~~~-~~~~~a~~l~iP~v~~ 158 (381)
. ..+.+....+-..+++++.+ .+||+|++ |.... ++..+|-+.+||+.=+
T Consensus 70 ~----~tl~~~t~~~i~~~~~vl~~--~kPD~VlVhGDT~t~lA~alaa~~~~IpV~Hv 122 (383)
T COG0381 70 G----QTLGEITGNIIEGLSKVLEE--EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHV 122 (383)
T ss_pred C----CCHHHHHHHHHHHHHHHHHh--hCCCEEEEeCCcchHHHHHHHHHHhCCceEEE
Confidence 0 11222222334567778777 79999884 54444 4456677888996543
No 216
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=38.76 E-value=35 Score=29.33 Aligned_cols=33 Identities=30% Similarity=0.202 Sum_probs=25.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
|-+++..+.|-+ -.+||++|+++||+|+++...
T Consensus 17 VR~itN~SSG~i--G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 17 VRGITNHSTGQL--GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred ceeecCccchHH--HHHHHHHHHhCCCEEEEEECc
Confidence 666777766644 367889999999999998643
No 217
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=38.62 E-value=3.1e+02 Score=24.98 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
..++++-.++.|-..-...||..|+.+|++|.++....+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 457777788889999999999999999999999987654
No 218
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=38.55 E-value=41 Score=27.71 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=26.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
|++.-+++.|-.. ...++++|.++|++|.++.++.-..
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~ 39 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKE 39 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHH
Confidence 4444444444443 3789999999999999998775443
No 219
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=38.12 E-value=1.6e+02 Score=24.33 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 046582 35 IPMIDIARLLAQHGAIVTIVTTPVNAARFKTV 66 (381)
Q Consensus 35 ~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~ 66 (381)
.-+..+|+.|.+.|.++ +++...+..++..
T Consensus 11 ~~l~~lAk~L~~lGf~I--~AT~GTAk~L~e~ 40 (187)
T cd01421 11 TGLVEFAKELVELGVEI--LSTGGTAKFLKEA 40 (187)
T ss_pred ccHHHHHHHHHHCCCEE--EEccHHHHHHHHc
Confidence 44778999999999987 3555566555543
No 220
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.51 E-value=41 Score=30.30 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=37.5
Q ss_pred chhhccccccCCCCcEEEEeeCCCcC--C---------------C--hhhHHHHHHHHhhCCCCEEEE
Q 046582 282 VPECLTWLDSQQPSSVVYVCLGSICN--L---------------K--SSQLIELGLGLEASKKPFIWV 330 (381)
Q Consensus 282 ~~~l~~fLd~~~~~svIyvSfGS~~~--~---------------~--~~~~~~l~~al~~~~~~~lW~ 330 (381)
|+.+.+.|++.++..+|.|.||++-. + . ...+.+|++.......+|+|.
T Consensus 165 pk~i~~~l~~~~~~a~vVV~lGaND~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~~~~V~Wv 232 (354)
T COG2845 165 PKAIPELLDKHPKPAAVVVMLGANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTHKVPVLWV 232 (354)
T ss_pred HHHHHHHHHhcCCccEEEEEecCCCHHhcccCCeeeecCchHHHHHHHHHHHHHHHHhcccCCcEEEe
Confidence 46778888888666799999999863 1 1 123567888888899999997
No 221
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=37.38 E-value=52 Score=27.22 Aligned_cols=46 Identities=20% Similarity=0.060 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecC
Q 046582 32 GHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQF 84 (381)
Q Consensus 32 gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 84 (381)
|-=...-.|+..|+++||+|||.........-.. ...+++...++.
T Consensus 18 GfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~-------~y~gv~l~~i~~ 63 (185)
T PF09314_consen 18 GFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEF-------EYNGVRLVYIPA 63 (185)
T ss_pred cHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCc-------ccCCeEEEEeCC
Confidence 4445566788888889999999865443321111 123677776653
No 222
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=37.23 E-value=57 Score=26.70 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCHHH-HHHHHHHHHh-CCCeEEEEeCCcchh
Q 046582 23 FLLLPFLAQGHLIP-MIDIARLLAQ-HGAIVTIVTTPVNAA 61 (381)
Q Consensus 23 i~~~~~~~~gH~~p-~~~la~~L~~-rGh~Vt~~t~~~~~~ 61 (381)
|++.-+++ ||... ...+.++|.+ +||+|+++.+..-..
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 34444443 78766 8899999985 699999998765443
No 223
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=37.22 E-value=62 Score=28.48 Aligned_cols=39 Identities=5% Similarity=0.043 Sum_probs=25.0
Q ss_pred cEEEEeeCCCcCCChh-hHHHHHHHHhh--CCCCEEEEEeCC
Q 046582 296 SVVYVCLGSICNLKSS-QLIELGLGLEA--SKKPFIWVTRVG 334 (381)
Q Consensus 296 svIyvSfGS~~~~~~~-~~~~l~~al~~--~~~~~lW~~~~~ 334 (381)
.++.+||||...-..+ .+..+.+.+++ .++.|-|.+...
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4899999999885554 66777777765 567999998764
No 224
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=36.49 E-value=77 Score=24.78 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
.|.++-....|-..-...|+++|.+||++|-++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 577777788899999999999999999999865
No 225
>PRK11519 tyrosine kinase; Provisional
Probab=35.91 E-value=55 Score=33.65 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=30.2
Q ss_pred cEEEEEc--CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 21 FHFLLLP--FLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 21 ~~i~~~~--~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
.++++++ .++.|-......||..|++.|++|-++-...
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3555444 4688999999999999999999999885543
No 226
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=35.84 E-value=36 Score=32.83 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCCCCHHHH------------HHHHHHHHhCCCeEEEEeCCc
Q 046582 20 QFHFLLLPFLAQGHLIPM------------IDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~------------~~la~~L~~rGh~Vt~~t~~~ 58 (381)
..+|++...|+.--+.|. ..||+++..||++||+++++.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 347888777777777665 578999999999999998664
No 227
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=35.11 E-value=1e+02 Score=23.15 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
||++..-++.|-......+++.|+++|.+|-++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 3778888889999999999999999999999887665
No 228
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=34.98 E-value=97 Score=25.73 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCcEEE-ECCCC-cchHHHHHHcCCCeEEEecc
Q 046582 120 PFENLFKEQTPKPCCII-SDMGH-PWTVDTAAKFNVPRIIFHGF 161 (381)
Q Consensus 120 ~l~~ll~~~~~~~DlvI-~d~~~-~~~~~~a~~l~iP~v~~~~~ 161 (381)
.+.+.++. .++|+|+ .+.-. +.+..+|..+|+|.+.+--.
T Consensus 41 ~la~~~~~--~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 41 EFARRFKD--EGITKILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred HHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 33344444 4789998 44433 47788999999999887543
No 229
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=34.87 E-value=1.5e+02 Score=24.04 Aligned_cols=86 Identities=9% Similarity=0.003 Sum_probs=46.5
Q ss_pred cEEEeccHHHhhHHHHHHHHccCCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCC
Q 046582 229 YGAIINTFEEIESAFVEGCKKGKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNL 308 (381)
Q Consensus 229 ~~~~~ns~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~ 308 (381)
...++-+-++.-....+.++..+ |++.-+|-....... ....++.+.+.+.+++ +|+|++|+=-
T Consensus 48 ~v~llG~~~~~~~~~~~~l~~~y-p~l~i~g~~~g~~~~------------~~~~~i~~~I~~~~pd-iv~vglG~Pk-- 111 (171)
T cd06533 48 RVFLLGAKPEVLEKAAERLRARY-PGLKIVGYHHGYFGP------------EEEEEIIERINASGAD-ILFVGLGAPK-- 111 (171)
T ss_pred eEEEECCCHHHHHHHHHHHHHHC-CCcEEEEecCCCCCh------------hhHHHHHHHHHHcCCC-EEEEECCCCH--
Confidence 34445444443344445566655 566666643332111 1234577888877776 9999999732
Q ss_pred ChhhHHHHHHHHhhCCCCEEEEEeC
Q 046582 309 KSSQLIELGLGLEASKKPFIWVTRV 333 (381)
Q Consensus 309 ~~~~~~~l~~al~~~~~~~lW~~~~ 333 (381)
. -.-+.+-...++..++--+..
T Consensus 112 --Q-E~~~~~~~~~l~~~v~~~vG~ 133 (171)
T cd06533 112 --Q-ELWIARHKDRLPVPVAIGVGG 133 (171)
T ss_pred --H-HHHHHHHHHHCCCCEEEEece
Confidence 1 111233333456676666655
No 230
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=34.72 E-value=83 Score=31.52 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=36.2
Q ss_pred cccccCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 13 AMISEASQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 13 ~m~~~~~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
+|...++..-|.++-+...|-..-+..|+.+|.+||++|-++=.
T Consensus 3 ~~~~~~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 3 PFTNPLSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred cccCCCCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 35555545567788888999999999999999999999998853
No 231
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=34.45 E-value=58 Score=29.64 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=25.4
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCeEEEecch
Q 046582 130 PKPCCII-SDMGHP-WTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 130 ~~~DlvI-~d~~~~-~~~~~a~~l~iP~v~~~~~~ 162 (381)
..||+|| .|.-.- .+..=|.++|||+|.+.-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 4688877 777544 67778999999999986544
No 232
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=34.24 E-value=1.1e+02 Score=24.41 Aligned_cols=53 Identities=13% Similarity=0.095 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEec
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQ 83 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 83 (381)
+++|+.-+..-+++|..+|.+..++.+..+...+.+...... ....++|..-+
T Consensus 60 s~~HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g-~~~~V~f~aD~ 112 (171)
T KOG0541|consen 60 SSSHVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLG-ANDHVKFVADP 112 (171)
T ss_pred ccccCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcC-ccceEEEEecC
Confidence 679999999999999999999888766655444444332221 22356776544
No 233
>PRK13604 luxD acyl transferase; Provisional
Probab=33.95 E-value=90 Score=28.22 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
..+++..+..++..-+..+|+.|+++|..|..+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 455555665667667999999999999998765
No 234
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=33.24 E-value=44 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCeEEEEeCC
Q 046582 39 DIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 39 ~la~~L~~rGh~Vt~~t~~ 57 (381)
.+|..|++.||+||++.-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999754
No 235
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=32.86 E-value=1e+02 Score=29.02 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcc-------h---HHHHHHcCCCeEEEe
Q 046582 119 LPFENLFKEQTPKPCCIISDMGHPW-------T---VDTAAKFNVPRIIFH 159 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI~d~~~~~-------~---~~~a~~l~iP~v~~~ 159 (381)
+.+.++++. .++|++|+...+.. + ..+.+++|||.+.-.
T Consensus 66 ~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 66 ARVLEMLKD--KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 445566666 69999999997752 1 234567999998754
No 236
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=32.80 E-value=1e+02 Score=29.04 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcc-------h---HHHHHHcCCCeEEEe
Q 046582 119 LPFENLFKEQTPKPCCIISDMGHPW-------T---VDTAAKFNVPRIIFH 159 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI~d~~~~~-------~---~~~a~~l~iP~v~~~ 159 (381)
+.+.++++. .++|++|+...+.. + ..+.+++|||.+.-.
T Consensus 66 ~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 66 AKVLEMIKG--ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 445566666 69999999997752 1 234567999988754
No 237
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=32.78 E-value=89 Score=26.77 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=29.6
Q ss_pred EEEEEcCC--CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 22 HFLLLPFL--AQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 22 ~i~~~~~~--~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
++++++++ +-|-..-.-+|+..||++|+.|.++-..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 56666665 6688899999999999999999988544
No 238
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=32.75 E-value=2.6e+02 Score=22.37 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=32.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
+++.-.++.|-......++..|+++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56777788899999999999999999999999877554
No 239
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=32.67 E-value=36 Score=32.71 Aligned_cols=31 Identities=19% Similarity=0.021 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
||+++-.+.- -++-|.+|+++||+||++-..
T Consensus 2 rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 2 RVAIAGAGLA-----GLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred eEEEEcccHH-----HHHHHHHHHhCCCceEEEecc
Confidence 4555544432 367789999999999999544
No 240
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=32.54 E-value=1.2e+02 Score=20.96 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
+++...++.|=..-...++..|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 445555677888999999999999999998765
No 241
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=32.47 E-value=3.4e+02 Score=23.65 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=25.4
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCeEEEecchH
Q 046582 130 PKPCCII-SDMGHP-WTVDTAAKFNVPRIIFHGFSC 163 (381)
Q Consensus 130 ~~~DlvI-~d~~~~-~~~~~a~~l~iP~v~~~~~~~ 163 (381)
.-||+++ .|+-.- -+..-|.++|||+|.+.-+.+
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 4488876 787554 567779999999999865543
No 242
>PRK03094 hypothetical protein; Provisional
Probab=31.83 E-value=46 Score=23.18 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 046582 37 MIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 37 ~~~la~~L~~rGh~Vt~~t~~ 57 (381)
+..+.++|.++||+|.=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999877543
No 243
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=31.74 E-value=1.3e+02 Score=24.62 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCCcEEE-ECCC-CcchHHHHHHcCCCeEEE
Q 046582 120 PFENLFKEQTPKPCCII-SDMG-HPWTVDTAAKFNVPRIIF 158 (381)
Q Consensus 120 ~l~~ll~~~~~~~DlvI-~d~~-~~~~~~~a~~l~iP~v~~ 158 (381)
.+.+..+. .++|.|+ .+.- +..+..+|.++|+|.|.+
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 34444444 4799999 5554 347889999999999887
No 244
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=31.71 E-value=97 Score=28.30 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.5
Q ss_pred cEEEE--EcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 21 FHFLL--LPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 21 ~~i~~--~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
+-|.+ ++.++.|-.-....|++.|.++|++|.+++
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 35667 788999999999999999999999999887
No 245
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=31.69 E-value=98 Score=27.24 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=30.1
Q ss_pred ccccCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 14 MISEASQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 14 m~~~~~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
|..+.++..|++++..+.+. .-+..++..|.++||+|..+.-.
T Consensus 12 ~~~~~~~p~vvliHG~~~~~-~~w~~~~~~L~~~g~~vi~~dl~ 54 (273)
T PLN02211 12 MKPNRQPPHFVLIHGISGGS-WCWYKIRCLMENSGYKVTCIDLK 54 (273)
T ss_pred ccccCCCCeEEEECCCCCCc-CcHHHHHHHHHhCCCEEEEeccc
Confidence 33434456788888876544 45688889999999998776443
No 246
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.62 E-value=1.8e+02 Score=23.53 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=48.8
Q ss_pred cEEEeccHHHhhHHHHHHHHccCCCceEEeCcCcCCCccchhhhhcCCCCCCCchhhccccccCCCCcEEEEeeCCCcCC
Q 046582 229 YGAIINTFEEIESAFVEGCKKGKQGKVWCIGPVSLCNKESIDKVERGNKAAIDVPECLTWLDSQQPSSVVYVCLGSICNL 308 (381)
Q Consensus 229 ~~~~~ns~~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~fLd~~~~~svIyvSfGS~~~~ 308 (381)
...++-+-++.-......++..+ |.+.-+|-....-.. ...+++.+.+.++++. +|.+++|+--
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~~g~f~~------------~~~~~i~~~I~~~~pd-iv~vglG~Pk-- 113 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYHHGYFDE------------EEEEAIINRINASGPD-IVFVGLGAPK-- 113 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCCh------------hhHHHHHHHHHHcCCC-EEEEECCCCH--
Confidence 44455555554445566677766 566666644332111 2457788888887776 9999998732
Q ss_pred ChhhHHHH-HHHHhhCCCCEEEEEeC
Q 046582 309 KSSQLIEL-GLGLEASKKPFIWVTRV 333 (381)
Q Consensus 309 ~~~~~~~l-~~al~~~~~~~lW~~~~ 333 (381)
| +.+ .+--..++.++.--+..
T Consensus 114 ---Q-E~~~~~~~~~l~~~v~i~vG~ 135 (172)
T PF03808_consen 114 ---Q-ERWIARHRQRLPAGVIIGVGG 135 (172)
T ss_pred ---H-HHHHHHHHHHCCCCEEEEECc
Confidence 1 233 33334467674444443
No 247
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=31.36 E-value=78 Score=26.19 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCcchh
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQ-HGAIVTIVTTPVNAA 61 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~-rGh~Vt~~t~~~~~~ 61 (381)
+|++.-+++.+ ..=...++++|.+ .||+|+++.+..-..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~ 42 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQ 42 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHH
Confidence 57777777655 6668999999999 599999998775443
No 248
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=31.31 E-value=64 Score=29.16 Aligned_cols=34 Identities=18% Similarity=0.006 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
+++|+++-.++.| ..+|..|+++||+|+++.-..
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 4679988777644 567888999999999997543
No 249
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.27 E-value=55 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
+|+=+-.+ .++.+|++|+++|.+|+..
T Consensus 16 kVvEVGiG------~~~~VA~~L~e~g~dv~at 42 (129)
T COG1255 16 KVVEVGIG------FFLDVAKRLAERGFDVLAT 42 (129)
T ss_pred cEEEEccc------hHHHHHHHHHHcCCcEEEE
Confidence 56655544 4789999999999988765
No 250
>PRK08939 primosomal protein DnaI; Reviewed
Probab=31.25 E-value=72 Score=28.84 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
.-+++.-.++.|-..-+.++|++|+++|..|++++.+....
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35888878888999999999999999999999997664443
No 251
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.19 E-value=53 Score=26.55 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCc
Q 046582 38 IDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 38 ~~la~~L~~rGh~Vt~~t~~~ 58 (381)
..++++|.++||+|+.++-..
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSG
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 568999999999999997543
No 252
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=30.97 E-value=47 Score=23.18 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCc
Q 046582 37 MIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 37 ~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
+..+.+.|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 5578999999999999886554
No 253
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=30.96 E-value=72 Score=26.66 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=24.6
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCeEEEecch
Q 046582 130 PKPCCII-SDMGHP-WTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 130 ~~~DlvI-~d~~~~-~~~~~a~~l~iP~v~~~~~~ 162 (381)
..||++| .|+..- -+..-|.++|||+|.+.-+.
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 3577776 787654 66777999999999986543
No 254
>PRK05973 replicative DNA helicase; Provisional
Probab=30.75 E-value=1.3e+02 Score=26.11 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKT 65 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~ 65 (381)
.-+++.-.|+.|-....++++.+-+++|..|.+++.+.....+..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 457788888999999999999999999999999998877655443
No 255
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=30.68 E-value=52 Score=29.54 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
.-++++..+.|= -.+.|++||+||.+|.+++
T Consensus 50 ~WAVVTGaTDGI---GKayA~eLAkrG~nvvLIs 80 (312)
T KOG1014|consen 50 SWAVVTGATDGI---GKAYARELAKRGFNVVLIS 80 (312)
T ss_pred CEEEEECCCCcc---hHHHHHHHHHcCCEEEEEe
Confidence 466666665542 3689999999999988775
No 256
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=30.55 E-value=93 Score=27.23 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
.|.++.=++-|...-...||..|+++|++|-++=
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4666777788999999999999999999988773
No 257
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=30.47 E-value=1.3e+02 Score=26.23 Aligned_cols=46 Identities=17% Similarity=0.056 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKTV 66 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~ 66 (381)
..+++.-.|+.|......+++.+.+++|..|-+++.......+.+.
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 4688888999999999999999999999999999988876655443
No 258
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=30.43 E-value=1.2e+02 Score=23.70 Aligned_cols=34 Identities=24% Similarity=0.080 Sum_probs=28.3
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 24 LLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 24 ~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
.++.++...-+.+..-++...+.+|++|+++.+.
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 4555666688899999999999999999998664
No 259
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=30.31 E-value=5.2e+02 Score=25.10 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=25.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 27 PFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 27 ~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
|...-|-......|++.|.++|.+|..+=+.
T Consensus 6 T~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 6 TTSSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 3344688889999999999999999987553
No 260
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=30.19 E-value=56 Score=26.26 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=19.4
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHhhC
Q 046582 297 VVYVCLGSICNLKSSQLIELGLGLEAS 323 (381)
Q Consensus 297 vIyvSfGS~~~~~~~~~~~l~~al~~~ 323 (381)
.+|+++||+..-+.+.++.-.+.|++.
T Consensus 3 ~v~i~lGSN~g~~~~~l~~A~~~L~~~ 29 (159)
T PRK10239 3 VAYIAIGSNLASPLEQVNAALKALGDI 29 (159)
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcC
Confidence 589999999865555566666666554
No 261
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=29.90 E-value=68 Score=27.10 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=25.8
Q ss_pred HHHHHhhcCCCCcEEEECCCCc---chHHHHH----HcCCCeEEEecc
Q 046582 121 FENLFKEQTPKPCCIISDMGHP---WTVDTAA----KFNVPRIIFHGF 161 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~---~~~~~a~----~l~iP~v~~~~~ 161 (381)
+.+++++....+|+++.|-... -..++|. .+|+|.|++.=.
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 4444444435799999998754 3445544 456788887544
No 262
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=29.79 E-value=55 Score=28.82 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
+-++++..+.| =-..+|+.|++|||+|.++.
T Consensus 7 ~~~lITGASsG---IG~~~A~~lA~~g~~liLva 37 (265)
T COG0300 7 KTALITGASSG---IGAELAKQLARRGYNLILVA 37 (265)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCEEEEEe
Confidence 45555555544 24689999999999999885
No 263
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=29.72 E-value=1.1e+02 Score=25.75 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
+.+|.+-..|+-|-..-|+.=|++|.++|.+|.+-.-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 57899999999999999999999999999999876444
No 264
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=29.57 E-value=70 Score=25.59 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
+..+++++-.+. .-.+.++.|.+.|++||++++..
T Consensus 12 ~~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 12 HNKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCcc
Confidence 345777775543 34788999999999999997553
No 265
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.47 E-value=71 Score=28.80 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCcchhhHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH--GAIVTIVTTPVNAARFK 64 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~~~~ 64 (381)
+|+++-...-|++.-...+.+.|.++ +.+||+++...+...++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 47888888899999999999999997 99999999876655443
No 266
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=29.41 E-value=77 Score=26.68 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=24.3
Q ss_pred CCcEEE-ECCCCc-chHHHHHHcCCCeEEEecch
Q 046582 131 KPCCII-SDMGHP-WTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 131 ~~DlvI-~d~~~~-~~~~~a~~l~iP~v~~~~~~ 162 (381)
.||++| .|.-.- -+..-|.++|||.|.+.-+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 578877 787554 56677999999999986544
No 267
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=29.40 E-value=92 Score=26.85 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCH-HHHHHHHHHHHhC--CCeEEEEeCCcchh
Q 046582 23 FLLLPFLAQGHL-IPMIDIARLLAQH--GAIVTIVTTPVNAA 61 (381)
Q Consensus 23 i~~~~~~~~gH~-~p~~~la~~L~~r--Gh~Vt~~t~~~~~~ 61 (381)
|++.-+++ |+. .=...|+++|.++ |++|.++.+..-..
T Consensus 2 i~~~itGs-~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~ 42 (234)
T TIGR02700 2 IGWGITGA-GHLLVESFQVMKELKREIEELRVSTFVSRAGEE 42 (234)
T ss_pred eEEEEeCc-cHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHh
Confidence 34433443 555 5888999999999 99999998765433
No 268
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=29.40 E-value=65 Score=24.72 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=20.6
Q ss_pred EEeeCCCcCCChhhHHHHHHHHhhCC
Q 046582 299 YVCLGSICNLKSSQLIELGLGLEASK 324 (381)
Q Consensus 299 yvSfGS~~~~~~~~~~~l~~al~~~~ 324 (381)
|+|+||+..-+.+.+....+.|++.+
T Consensus 1 ~i~LGSN~~~~~~~l~~A~~~L~~~~ 26 (127)
T PF01288_consen 1 YISLGSNLGDREQNLRQALQALSALP 26 (127)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHCST
T ss_pred CEEEeCchHhHHHHHHHHHHHHhcCC
Confidence 89999997656666778888888773
No 269
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.39 E-value=49 Score=28.34 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeC
Q 046582 36 PMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 36 p~~~la~~L~~rGh~Vt~~t~ 56 (381)
.-..+|+.|.++||+|+++-.
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~ 31 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDR 31 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEc
Confidence 346899999999999999843
No 270
>PRK04940 hypothetical protein; Provisional
Probab=29.39 E-value=1.1e+02 Score=25.08 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=24.3
Q ss_pred CCcEEEECCC-CcchHHHHHHcCCCeEEEecch
Q 046582 131 KPCCIISDMG-HPWTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 131 ~~DlvI~d~~-~~~~~~~a~~l~iP~v~~~~~~ 162 (381)
+.+++|--.+ .+|+.-+|+++|+|.|.+.|.-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 3567774444 4588999999999999997764
No 271
>PLN02949 transferase, transferring glycosyl groups
Probab=29.35 E-value=5.3e+02 Score=24.91 Aligned_cols=129 Identities=15% Similarity=0.110 Sum_probs=66.3
Q ss_pred CcEEEEEcCCC---CCCHHHHHHHHHHHHhCCC--eEEEEeCCcchhhHHHHHHhhhcCCCCe------eEEEecCCCcc
Q 046582 20 QFHFLLLPFLA---QGHLIPMIDIARLLAQHGA--IVTIVTTPVNAARFKTVLARATQSGLQI------RLTEIQFPWKE 88 (381)
Q Consensus 20 ~~~i~~~~~~~---~gH~~p~~~la~~L~~rGh--~Vt~~t~~~~~~~~~~~~~~~~~~~~~i------~~~~~~~~~~~ 88 (381)
+.+|+|+.... .|==..+...+..|.++|| +|+++|+...... +..+.+.. ..-++ .|+.+.-.
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~-~~~l~~~~-~~~~i~~~~~~~~v~l~~~--- 107 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASP-DSLAARAR-DRFGVELLSPPKVVHLRKR--- 107 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCH-HHHHHHHH-hhcceecCCCceEEEeccc---
Confidence 44666665443 2555788888999999999 7777786643322 22111000 01122 22222100
Q ss_pred cCCCCCCCCCCCCCChhHHHHHHHHHHhcHHHHHHHHhhcCCCCcEEEECCCCc-chHHHHHHcCCCeEEEecchHHH
Q 046582 89 AGLPEGCENIDMLPSIDLASKFFNSLSMLQLPFENLFKEQTPKPCCIISDMGHP-WTVDTAAKFNVPRIIFHGFSCFC 165 (381)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~DlvI~d~~~~-~~~~~a~~l~iP~v~~~~~~~~~ 165 (381)
+-++... . ..+..++..+..+.-.++.+.+. ++.|+.|...+ ....+++.+++|.+.+.-.+...
T Consensus 108 ~~~~~~~-----~---~~~t~~~~~~~~~~l~~~~~~~~----~p~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p~~~ 173 (463)
T PLN02949 108 KWIEEET-----Y---PRFTMIGQSLGSVYLAWEALCKF----TPLYFFDTSGYAFTYPLARLFGCKVVCYTHYPTIS 173 (463)
T ss_pred ccccccc-----C---CceehHHHHHHHHHHHHHHHHhc----CCCEEEeCCCcccHHHHHHhcCCcEEEEEeCCcch
Confidence 0111110 0 11223344444444445555432 34688888764 55667776799999887666433
No 272
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.35 E-value=64 Score=30.34 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=27.1
Q ss_pred cEEEEEcCC---CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 21 FHFLLLPFL---AQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 21 ~~i~~~~~~---~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
..+-+=|+. --||+.|+..|. .|+++||+|+++...
T Consensus 35 ~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 35 VYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred EEEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 346666666 238999887764 799999999998654
No 273
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=29.28 E-value=85 Score=23.62 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
+..|-+.|..+.+.+.|.-.+.+.|.+.-.++.++|+.+.
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 4679999999999999999999999999999999998865
No 274
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=29.26 E-value=1.2e+02 Score=24.21 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
+.++-..+.|-..-+..|+++|.++|++|.++-.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~ 35 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKH 35 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4566667889999999999999999999998854
No 275
>cd00483 HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.
Probab=29.23 E-value=56 Score=25.13 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=18.4
Q ss_pred EEEeeCCCcCCChhhHHHHHHHHhhCC
Q 046582 298 VYVCLGSICNLKSSQLIELGLGLEASK 324 (381)
Q Consensus 298 IyvSfGS~~~~~~~~~~~l~~al~~~~ 324 (381)
+|+|+||+..-+.+.++.....|++.+
T Consensus 1 ~~i~LGSN~~~~~~~l~~A~~~L~~~~ 27 (128)
T cd00483 1 VYLALGSNLGDRLANLRAALRALAALP 27 (128)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHHcCC
Confidence 589999998744455566666665543
No 276
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=29.22 E-value=1.3e+02 Score=25.31 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
..+++-....|-...+..+|+.|+++|+.|.+.
T Consensus 15 ~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~p 47 (218)
T PF01738_consen 15 PAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAP 47 (218)
T ss_dssp EEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE
T ss_pred CEEEEEcCCCCCchHHHHHHHHHHhcCCCEEec
Confidence 344444566788899999999999999776654
No 277
>PRK06835 DNA replication protein DnaC; Validated
Probab=29.10 E-value=85 Score=28.72 Aligned_cols=42 Identities=19% Similarity=0.053 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAAR 62 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~ 62 (381)
..|++.-.++.|-..-..++|++|.++|+.|.+++.......
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 457777777888888889999999999999999887654443
No 278
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=29.02 E-value=92 Score=29.29 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARF 63 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~ 63 (381)
.+|++.-+++ +...-...++++|.++|++|+++.+..-...+
T Consensus 4 k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 4 KKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 4677776665 55566899999999999999998776544333
No 279
>PRK04148 hypothetical protein; Provisional
Probab=28.98 E-value=59 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
.+++.+-.+ .| ..+|..|++.||+|+.+
T Consensus 18 ~kileIG~G-fG-----~~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 18 KKIVELGIG-FY-----FKVAKKLKESGFDVIVI 45 (134)
T ss_pred CEEEEEEec-CC-----HHHHHHHHHCCCEEEEE
Confidence 467777666 33 34688899999999988
No 280
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=28.96 E-value=65 Score=26.10 Aligned_cols=35 Identities=26% Similarity=0.056 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
..+|+++..++. -=-=-+.+|+.|+++|++|+++.
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 456777776641 11124678899999999999953
No 281
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.86 E-value=1.2e+02 Score=24.93 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=29.7
Q ss_pred hhccccccCCCCcEEEEeeCCCcCC---C------------hhh----HHHHHHHHhhCCCCEEEEE
Q 046582 284 ECLTWLDSQQPSSVVYVCLGSICNL---K------------SSQ----LIELGLGLEASKKPFIWVT 331 (381)
Q Consensus 284 ~l~~fLd~~~~~svIyvSfGS~~~~---~------------~~~----~~~l~~al~~~~~~~lW~~ 331 (381)
.+.+++.+.++. +|.+++|++-.. + .++ ++.+++.++..+.+++|.-
T Consensus 50 ~~~~~l~~~~pd-~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~ 115 (200)
T cd01829 50 KLKELIAEEKPD-VVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVG 115 (200)
T ss_pred HHHHHHhcCCCC-EEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 355555555554 999999998642 1 122 3456666666678988863
No 282
>PLN02891 IMP cyclohydrolase
Probab=28.72 E-value=3.4e+02 Score=26.59 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEecCCCcccCCCCCCCC-CCCCCChhHHHHHHHH
Q 046582 35 IPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEIQFPWKEAGLPEGCEN-IDMLPSIDLASKFFNS 113 (381)
Q Consensus 35 ~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 113 (381)
.-+..+|+.|.+.|.+ ++++....+.++.. ++.+..+..- -++|+...- .... .......+. .
T Consensus 33 tgi~~fAk~L~~~gve--IiSTgGTak~L~e~---------Gi~v~~Vsd~---TgfPEiL~GRVKTL-HPkIhgGIL-a 96 (547)
T PLN02891 33 TDLALLANGLQELGYT--IVSTGGTASALEAA---------GVSVTKVEEL---TNFPEMLDGRVKTL-HPAVHGGIL-A 96 (547)
T ss_pred cCHHHHHHHHHHCCCE--EEEcchHHHHHHHc---------CCceeeHHhc---cCCchhhCCccccc-Cchhhhhhh-c
Confidence 3467899999999866 56666666655553 6766665421 134432210 0000 001111111 0
Q ss_pred HHhcHHHHHHHHhhcCCCCcEEEECCC
Q 046582 114 LSMLQLPFENLFKEQTPKPCCIISDMG 140 (381)
Q Consensus 114 ~~~~~~~l~~ll~~~~~~~DlvI~d~~ 140 (381)
-....+.++++-+..-..+|+||+..+
T Consensus 97 ~r~~~~h~~~l~~~~I~~IDlVvVNLY 123 (547)
T PLN02891 97 RRDQEHHMEALNEHGIGTIDVVVVNLY 123 (547)
T ss_pred CCCCHHHHHHHHHcCCCceeeEEEecc
Confidence 012334455555543357899988764
No 283
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=28.57 E-value=1.3e+02 Score=22.83 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=24.3
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 25 LLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 25 ~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
++-.+..+.-.-+..+++.|+++|+.|..+...
T Consensus 3 v~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 3 VLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 344444456777899999999999998877443
No 284
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=28.56 E-value=1.8e+02 Score=22.72 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
.++-+.++.|=..-...||..|+++|++|-++-......
T Consensus 4 ~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~ 42 (157)
T PF13614_consen 4 AVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSP 42 (157)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCC
Confidence 445567788999999999999999999988876555443
No 285
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=28.33 E-value=81 Score=25.82 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
...+++.-.++.|-..-..++++++.++|+.|-+++......
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 346888888888988889999999999999999987654433
No 286
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.07 E-value=1.2e+02 Score=26.28 Aligned_cols=32 Identities=25% Similarity=0.159 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
++++++..+.|. ---.++|++|+++|++|.+.
T Consensus 9 k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~ 40 (260)
T PRK06603 9 KKGLITGIANNM-SISWAIAQLAKKHGAELWFT 40 (260)
T ss_pred cEEEEECCCCCc-chHHHHHHHHHHcCCEEEEE
Confidence 678888887521 13468889999999998775
No 287
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.07 E-value=1.1e+02 Score=26.73 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
+|.+..=++-|-..-...||..|+++|++|-++
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 466666778899999999999999999998877
No 288
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=28.01 E-value=1.1e+02 Score=27.17 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=34.5
Q ss_pred HhcHHHHHHHHhhcCCCCcEEEECCCCc----c-hHHHHHHcCCCeEEEec
Q 046582 115 SMLQLPFENLFKEQTPKPCCIISDMGHP----W-TVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 115 ~~~~~~l~~ll~~~~~~~DlvI~d~~~~----~-~~~~a~~l~iP~v~~~~ 160 (381)
..+++.+++++++. .+.-+||.|.|.= | .+.+|.+.++|++++.-
T Consensus 133 p~IKE~vR~~I~~A-~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD 182 (284)
T PF07894_consen 133 PHIKEVVRRMIQQA-QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLD 182 (284)
T ss_pred CCHHHHHHHHHHHh-cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEec
Confidence 35678888888874 7899999999863 2 45677799999977643
No 289
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=27.97 E-value=47 Score=25.76 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 32 GHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 32 gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
..+--.+-++..|.++||+|++...+.-..
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~k 40 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALK 40 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHh
Confidence 344556778899999999999997764333
No 290
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=27.93 E-value=83 Score=27.63 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=25.0
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCeEEEecch
Q 046582 130 PKPCCII-SDMGHP-WTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 130 ~~~DlvI-~d~~~~-~~~~~a~~l~iP~v~~~~~~ 162 (381)
..||+|| .|.-.- .+..=|.++|||+|++.-+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 4688887 677544 66777999999999986543
No 291
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=27.82 E-value=5.4e+02 Score=24.52 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEE
Q 046582 119 LPFENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIF 158 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~ 158 (381)
..+++++++ .++|++|.+.. ...+|+++|+|.+.+
T Consensus 362 ~e~~~~l~~--~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKE--LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHh--cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 346677776 58999998875 568999999998765
No 292
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=27.77 E-value=1.7e+02 Score=23.61 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=31.9
Q ss_pred HHhcHHHHHHHHhhcCCCCcEEEECCCCcc---------------hHHHHHHcCCCeEEEecchH
Q 046582 114 LSMLQLPFENLFKEQTPKPCCIISDMGHPW---------------TVDTAAKFNVPRIIFHGFSC 163 (381)
Q Consensus 114 ~~~~~~~l~~ll~~~~~~~DlvI~d~~~~~---------------~~~~a~~l~iP~v~~~~~~~ 163 (381)
...+.+.+++++++ .+||.++.|..++. ...++.+.|+|..-+.+...
T Consensus 46 l~~I~~~l~~~i~~--~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~V 108 (164)
T PRK00039 46 LKQIYDGLSELIDE--YQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQV 108 (164)
T ss_pred HHHHHHHHHHHHHH--hCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHh
Confidence 34455778888887 68999988875432 12345567888777755543
No 293
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=27.60 E-value=90 Score=26.75 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=24.9
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCeEEEecch
Q 046582 130 PKPCCII-SDMGHP-WTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 130 ~~~DlvI-~d~~~~-~~~~~a~~l~iP~v~~~~~~ 162 (381)
..||+|| .|+--- .+..-|.++|||+|.+.-+.
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCC
Confidence 4688887 676543 66777999999999986544
No 294
>PLN02293 adenine phosphoribosyltransferase
Probab=27.56 E-value=1.9e+02 Score=23.96 Aligned_cols=38 Identities=5% Similarity=0.002 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCcEEE-ECCCC-cchHHHHHHcCCCeEEE
Q 046582 119 LPFENLFKEQTPKPCCII-SDMGH-PWTVDTAAKFNVPRIIF 158 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI-~d~~~-~~~~~~a~~l~iP~v~~ 158 (381)
+.+.+.+++ .++|+|+ .|.-. ..+..+|..+|+|.+.+
T Consensus 52 ~~l~~~~~~--~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 52 DLFVERYRD--MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHhh--cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 344444444 4789988 45433 37788999999997754
No 295
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=27.47 E-value=71 Score=26.99 Aligned_cols=24 Identities=25% Similarity=0.091 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcch
Q 046582 37 MIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 37 ~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
-..||++|+..||+|++.+.....
T Consensus 13 G~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 13 GSALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred HHHHHHHHHhCCCeEEEecCCChh
Confidence 367899999999999999765443
No 296
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.45 E-value=2.5e+02 Score=24.05 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
+++----+.|-..-..+++-.+...||+|++++++...
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 44444456799999999999999999999999988653
No 297
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=27.28 E-value=77 Score=29.64 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
.+.-|+++..+..|+-+-...++.+||.+|+=|-.+-
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aie 134 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIE 134 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE-
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEec
Confidence 4567999999999999999999999999998877664
No 298
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=27.15 E-value=62 Score=27.75 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=23.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
|-+++..+.| ---.++|++|+++|++|+++.
T Consensus 16 VR~itN~SSG--gIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 16 VRSITNHSTG--HLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred ceeecCCccc--HHHHHHHHHHHHCCCEEEEEc
Confidence 5566666655 345788999999999999874
No 299
>CHL00067 rps2 ribosomal protein S2
Probab=27.15 E-value=94 Score=26.76 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=25.0
Q ss_pred CCCcEEE-ECCCCc-chHHHHHHcCCCeEEEecch
Q 046582 130 PKPCCII-SDMGHP-WTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 130 ~~~DlvI-~d~~~~-~~~~~a~~l~iP~v~~~~~~ 162 (381)
..||+|| .|+-.- .+..-|.++|||+|++.-+.
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCC
Confidence 4688877 666544 67777999999999986554
No 300
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=27.11 E-value=1.8e+02 Score=25.35 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCcchhhHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH-GAIVTIVTTPVNAARFK 64 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r-Gh~Vt~~t~~~~~~~~~ 64 (381)
-+++...|+.|-...++++|..++.+ |+.|-+++.+-....+.
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~ 64 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELA 64 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Confidence 57778888999999999999999998 69999999987765543
No 301
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=26.51 E-value=1.9e+02 Score=24.88 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=32.7
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 046582 24 LLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAAR 62 (381)
Q Consensus 24 ~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~ 62 (381)
+..+=++-|-..-.+.||.+|+++|-.|+++=..++.+.
T Consensus 6 f~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 6 FASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred EecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 344556789999999999999999999999987777653
No 302
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=26.50 E-value=3.9e+02 Score=22.48 Aligned_cols=44 Identities=7% Similarity=0.038 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKT 65 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~ 65 (381)
-+++.-.|+.|-....++++.+-+++|+.|.+++.+.....+.+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 46667778889999999999988889999999998877665544
No 303
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=26.44 E-value=4.9e+02 Score=23.61 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=24.5
Q ss_pred ccccccCCCCcEEEEeeCCCcCCChhhHHHHHHHHhh-CCCCEEEEEeC
Q 046582 286 LTWLDSQQPSSVVYVCLGSICNLKSSQLIELGLGLEA-SKKPFIWVTRV 333 (381)
Q Consensus 286 ~~fLd~~~~~svIyvSfGS~~~~~~~~~~~l~~al~~-~~~~~lW~~~~ 333 (381)
.++|.+.+ +---+.+||-...+-.+ +++++++ ++.+|--++.+
T Consensus 238 l~~L~~~g--~~~~~NLG~G~G~SV~e---vi~a~~~vtg~~ip~~~~~ 281 (329)
T COG1087 238 LKYLKEGG--SNNIFNLGSGNGFSVLE---VIEAAKKVTGRDIPVEIAP 281 (329)
T ss_pred HHHHHhCC--ceeEEEccCCCceeHHH---HHHHHHHHhCCcCceeeCC
Confidence 35676632 23677899988877544 4444443 45555555543
No 304
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=26.15 E-value=2.1e+02 Score=23.13 Aligned_cols=43 Identities=14% Similarity=-0.048 Sum_probs=35.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhHHH
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARFKT 65 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~ 65 (381)
+++.-.|+.|-..-..+++.+.+++|..|.+++.+.....+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 4667777889999999999999999999999998877665443
No 305
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=26.13 E-value=2e+02 Score=25.04 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=33.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
+.+++...-++.|-......||..|+++|++|.++-..+.
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3466666777889999999999999999999998865543
No 306
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.09 E-value=4.6e+02 Score=23.19 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.+++++-..+.|-..-+..|+..+..+|+.|.+++....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 578888888889999999999999999999999987654
No 307
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=26.08 E-value=3.7e+02 Score=22.00 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
--|.+.+..+.|-..-.+.+|-+.+.+|++|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 4678888899999999999999999999999655
No 308
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=26.06 E-value=2.9e+02 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhHHHH
Q 046582 35 IPMIDIARLLAQHGAIVTIVTTPVNAARFKTV 66 (381)
Q Consensus 35 ~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~ 66 (381)
.-+..+++.|.+.|.++ +++...++.+++.
T Consensus 15 ~~iv~lAk~L~~lGfeI--~AT~GTak~L~e~ 44 (513)
T PRK00881 15 TGIVEFAKALVELGVEI--LSTGGTAKLLAEA 44 (513)
T ss_pred ccHHHHHHHHHHCCCEE--EEcchHHHHHHHC
Confidence 44789999999999987 3555666655553
No 309
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=25.68 E-value=1.7e+02 Score=25.80 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
+..+|-+.-.|+-|--.-.-.|+++|.++|++|-++.-.+..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS 69 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS 69 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC
Confidence 345788999999999999999999999999999999766543
No 310
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.60 E-value=1.4e+02 Score=20.89 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=30.4
Q ss_pred EEEEEcCCCC--CCHHHHHHHHHHHHhCCCeEEEEe-CCcchhhHHH
Q 046582 22 HFLLLPFLAQ--GHLIPMIDIARLLAQHGAIVTIVT-TPVNAARFKT 65 (381)
Q Consensus 22 ~i~~~~~~~~--gH~~p~~~la~~L~~rGh~Vt~~t-~~~~~~~~~~ 65 (381)
.++++|.... .+..-...++..|.+.|.+|.+-. ......+++.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~ 49 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFAD 49 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhH
Confidence 5788887753 466778889999999999998753 3333344433
No 311
>PRK12367 short chain dehydrogenase; Provisional
Probab=25.39 E-value=1.2e+02 Score=26.17 Aligned_cols=42 Identities=14% Similarity=-0.007 Sum_probs=27.6
Q ss_pred ccccccCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 12 SAMISEASQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 12 ~~m~~~~~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
.||+.++-+.+.++++..+. ---.+++++|+++|++|.++.-
T Consensus 5 ~~~~~~~l~~k~~lITGas~---gIG~ala~~l~~~G~~Vi~~~r 46 (245)
T PRK12367 5 DPMAQSTWQGKRIGITGASG---ALGKALTKAFRAKGAKVIGLTH 46 (245)
T ss_pred chhhHHhhCCCEEEEEcCCc---HHHHHHHHHHHHCCCEEEEEEC
Confidence 34665543335566665553 2347889999999999987753
No 312
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=25.33 E-value=1e+02 Score=23.31 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 34 LIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 34 ~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
+.++..+.-.+.-|||.+|++-|.-+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~ 36 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKN 36 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhc
Confidence 4567777777788999999998875543
No 313
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=25.27 E-value=1.2e+02 Score=28.54 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAARF 63 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~~~ 63 (381)
+.+|++.-+++ +...=...+.++|.++|++|.++.+..-...+
T Consensus 6 ~k~IllgvTGs-iaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 6 GKRIVLGVSGG-IAAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCeEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 34777777776 45667789999999999999999776544333
No 314
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=25.24 E-value=1.8e+02 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
.+-++-+-..|-..-+-+|+++|.+||++|-++=
T Consensus 4 Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred EEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 4667777888999999999999999999999883
No 315
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=25.18 E-value=1.3e+02 Score=21.64 Aligned_cols=35 Identities=17% Similarity=0.037 Sum_probs=24.3
Q ss_pred EEEEeeCCCcCCChhhHHHHHHHHhhC--CCCEEEEE
Q 046582 297 VVYVCLGSICNLKSSQLIELGLGLEAS--KKPFIWVT 331 (381)
Q Consensus 297 vIyvSfGS~~~~~~~~~~~l~~al~~~--~~~~lW~~ 331 (381)
+|+++.||...-..+.+..+++.+++. ...|-+.+
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~af 38 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAF 38 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 789999998764445677888888653 34565554
No 316
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=25.11 E-value=1.1e+02 Score=27.65 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCcchh
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQH--GAIVTIVTTPVNAA 61 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~r--Gh~Vt~~t~~~~~~ 61 (381)
||+++-..+-|++.-...+.+.|.++ +.+||+++...+..
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~ 43 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQ 43 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHH
Confidence 68999999999999999999999997 99999999775544
No 317
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.04 E-value=1.2e+02 Score=28.78 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEec
Q 046582 121 FENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~ 160 (381)
+++++++ .++|++|.+.. ...+|+++|+|.+.++.
T Consensus 362 ~~~~i~~--~~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 362 VGDMIAR--TEPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHh--hCCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 4445554 57899988763 44568899999877643
No 318
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.90 E-value=1e+02 Score=28.58 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 37 MIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 37 ~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
..-|.++|.+.||+|+++++.....
T Consensus 343 a~~l~~~m~~~Gh~V~~l~G~l~~~ 367 (477)
T KOG0332|consen 343 AMWLYEEMRAEGHQVSLLHGDLTVE 367 (477)
T ss_pred HHHHHHHHHhcCceeEEeeccchhH
Confidence 3457788888899999888765543
No 319
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.88 E-value=1e+02 Score=26.83 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCCCcEEE--ECCCCc----chHHHHHHcCCCeEEEe
Q 046582 118 QLPFENLFKEQTPKPCCII--SDMGHP----WTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 118 ~~~l~~ll~~~~~~~DlvI--~d~~~~----~~~~~a~~l~iP~v~~~ 159 (381)
.+.+.+++++ .++|++| +.+|.. -+..+|+..|||.+.|-
T Consensus 55 ~e~l~~~l~e--~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 55 AEGLAAFLRE--EGIDLLIDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHH--cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 3567778887 6888887 333322 25678889999998874
No 320
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=24.87 E-value=1.3e+02 Score=25.41 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=22.3
Q ss_pred HHHHHhhcCCCCcEEEECCCCc---chHH----HHHHcCCCeEEEecc
Q 046582 121 FENLFKEQTPKPCCIISDMGHP---WTVD----TAAKFNVPRIIFHGF 161 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~---~~~~----~a~~l~iP~v~~~~~ 161 (381)
+.++++....++|++++|-... -..+ ++-.+++|.|++.=.
T Consensus 79 ~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~ 126 (206)
T PF04493_consen 79 ILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKS 126 (206)
T ss_dssp HHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS
T ss_pred HHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCc
Confidence 4444555446789999998754 2233 444668898887544
No 321
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=24.73 E-value=1.5e+02 Score=24.59 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=26.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 27 PFLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 27 ~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
+-++.|-..-...||..|+++|++|.++=...
T Consensus 25 ~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 25 VKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 45567889999999999999999998884443
No 322
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.71 E-value=1.3e+02 Score=26.00 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCCCcEEEECCCCcc--hHH-HHHHcCCCeEEEecc
Q 046582 120 PFENLFKEQTPKPCCIISDMGHPW--TVD-TAAKFNVPRIIFHGF 161 (381)
Q Consensus 120 ~l~~ll~~~~~~~DlvI~d~~~~~--~~~-~a~~l~iP~v~~~~~ 161 (381)
.++++++. +||+||....... ... +.+.+|+|++.+...
T Consensus 66 n~E~i~~l---~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 66 NYEKIAAL---KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CHHHHHhc---CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 46777776 8999997654332 223 334588999887643
No 323
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.56 E-value=1.5e+02 Score=23.52 Aligned_cols=46 Identities=9% Similarity=0.038 Sum_probs=30.1
Q ss_pred hhccccccCCCCcEEEEeeCCCcC---CChhh----HHHHHHHHhh--CCCCEEEEE
Q 046582 284 ECLTWLDSQQPSSVVYVCLGSICN---LKSSQ----LIELGLGLEA--SKKPFIWVT 331 (381)
Q Consensus 284 ~l~~fLd~~~~~svIyvSfGS~~~---~~~~~----~~~l~~al~~--~~~~~lW~~ 331 (381)
.+.+++.. +++ +|.+.+|++-. .+.++ ++++++.+.+ .+.+|+|.-
T Consensus 40 ~l~~~~~~-~pd-~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~ 94 (169)
T cd01828 40 RLDEDVAL-QPK-AIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQS 94 (169)
T ss_pred HHHHHhcc-CCC-EEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 34455533 333 99999999875 34444 4556777766 677999963
No 324
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=24.55 E-value=19 Score=22.15 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=14.2
Q ss_pred eEecCcchhHHhhcCCCcee
Q 046582 358 LLIRGWAPQVMILSHPAVGG 377 (381)
Q Consensus 358 ~~~~~W~PQ~~vL~Hp~v~~ 377 (381)
+-...|.|+.|+||=...++
T Consensus 14 v~~~~w~P~mdLiA~~t~~g 33 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDG 33 (47)
T ss_pred EEEEEECCCCCEEEEEECCC
Confidence 44458999999997554443
No 325
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.36 E-value=5.5e+02 Score=23.42 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEecc
Q 046582 121 FENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHGF 161 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~ 161 (381)
+..+++ +.|++|+. .+...-+|..+|+|.|.++..
T Consensus 255 l~ali~----~a~l~I~n--DTGp~HlAaA~g~P~valfGp 289 (348)
T PRK10916 255 AVILIA----ACKAIVTN--DSGLMHVAAALNRPLVALYGP 289 (348)
T ss_pred HHHHHH----hCCEEEec--CChHHHHHHHhCCCEEEEECC
Confidence 344554 36898843 345778999999999988653
No 326
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=23.99 E-value=1.9e+02 Score=23.97 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=23.3
Q ss_pred CCCcEEE-ECCCC-cchHHHHHHcCCCeEEEec
Q 046582 130 PKPCCII-SDMGH-PWTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 130 ~~~DlvI-~d~~~-~~~~~~a~~l~iP~v~~~~ 160 (381)
.++|+|+ .+.-. ..+..+|..+|+|.+.+--
T Consensus 49 ~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 49 DGITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 4799998 44433 3677889999999988743
No 327
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.94 E-value=1.9e+02 Score=21.67 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
..|....+..+++.+.++|..|..+|.....+
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 45888999999999999999998888765544
No 328
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=23.88 E-value=73 Score=28.83 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 046582 38 IDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 38 ~~la~~L~~rGh~Vt~~t~~ 57 (381)
+.+|.+|+++|++||++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 57889999999999999655
No 329
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=23.77 E-value=1.5e+02 Score=21.73 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhH
Q 046582 35 IPMIDIARLLAQHGAIVTIVTTPVNAARF 63 (381)
Q Consensus 35 ~p~~~la~~L~~rGh~Vt~~t~~~~~~~~ 63 (381)
.|.+.|+++|.++|.+|.+.=|.......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 58899999999999999988665544433
No 330
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=23.72 E-value=76 Score=27.64 Aligned_cols=33 Identities=30% Similarity=0.219 Sum_probs=24.5
Q ss_pred cEEEEEcCCCC--CCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 21 FHFLLLPFLAQ--GHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 21 ~~i~~~~~~~~--gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
.+|+++..++- |+ -+.+|+.|+++|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 36777766643 43 35688999999999999874
No 331
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=23.70 E-value=1.3e+02 Score=25.45 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
++.||++.-+++-+ ..=...|.+.|. +||+|.++.++.-.+
T Consensus 18 ~~k~IllgVtGSIA-Ayk~~~lvr~L~-~g~~V~VvmT~~A~~ 58 (209)
T PLN02496 18 RKPRILLAASGSVA-AIKFGNLCHCFS-EWAEVRAVVTKASLH 58 (209)
T ss_pred CCCEEEEEEeCHHH-HHHHHHHHHHhc-CCCeEEEEEChhHhh
Confidence 34577777776544 334466888887 599999997765443
No 332
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=23.40 E-value=1e+02 Score=28.48 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCc
Q 046582 28 FLAQGHLIPMIDIARLLAQ-HGAIVTIVTTPV 58 (381)
Q Consensus 28 ~~~~gH~~p~~~la~~L~~-rGh~Vt~~t~~~ 58 (381)
.--+|++-..-+||+.|++ +|++|++.+-..
T Consensus 8 IDNyGDIGV~WRLArqLa~e~g~~VrLwvDdl 39 (371)
T TIGR03837 8 VDNYGDIGVCWRLARQLAAEHGHQVRLWVDDL 39 (371)
T ss_pred ecCCcchHHHHHHHHHHHHHhCCEEEEEECCH
Confidence 4467999999999999997 799999987653
No 333
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=23.34 E-value=1.7e+02 Score=26.21 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=30.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
+|++.-=++-|-..-...||..|+++|++|-++=
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID 35 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIG 35 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4777788888999999999999999999998874
No 334
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=23.31 E-value=1.2e+02 Score=23.24 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 36 PMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 36 p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
......++|.++||+|+++|+.....
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchh
Confidence 45566677789999999999886543
No 335
>PRK09739 hypothetical protein; Provisional
Probab=23.28 E-value=2.3e+02 Score=23.49 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCCeEEEEe
Q 046582 36 PMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 36 p~~~la~~L~~rGh~Vt~~t 55 (381)
-...++++|.++||+|+++-
T Consensus 22 l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 22 VAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 35556677778899999774
No 336
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=23.26 E-value=4.4e+02 Score=21.98 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
.+--|.+++..+.|-..--+.+|-+-+-+|.+|-++-
T Consensus 27 ~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 27 EKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred ccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 4457889999999999999999988888888888763
No 337
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=23.16 E-value=99 Score=27.55 Aligned_cols=30 Identities=33% Similarity=0.224 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
+|+++-.+..| ..+|..|+++||+||++..
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 45555544433 5688889999999999975
No 338
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.09 E-value=1.9e+02 Score=25.61 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred CCCcEEE-ECCCC-cchHHHHHHcCCCeEEEe
Q 046582 130 PKPCCII-SDMGH-PWTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 130 ~~~DlvI-~d~~~-~~~~~~a~~l~iP~v~~~ 159 (381)
.++|+|+ .+.-. +.+..+|..+|+|.+.+-
T Consensus 127 ~~iD~VvgvetkGIpLA~avA~~L~vp~vivR 158 (268)
T TIGR01743 127 REIDAVMTVATKGIPLAYAVASVLNVPLVIVR 158 (268)
T ss_pred CCCCEEEEEccchHHHHHHHHHHHCCCEEEEE
Confidence 4789998 44433 477889999999988863
No 339
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=23.07 E-value=1.5e+02 Score=25.75 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
.|+++.=++-|-..-...||..|+++|++|-++=
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4666677888999999999999999999999883
No 340
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.99 E-value=1.3e+02 Score=29.41 Aligned_cols=34 Identities=9% Similarity=0.260 Sum_probs=24.4
Q ss_pred HHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEe
Q 046582 121 FENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~ 159 (381)
+++++++ .++|+||.+.. ...+|+++|||++.++
T Consensus 366 i~~~I~~--~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 366 VGDMIAR--VEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHh--cCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 4555555 57999998763 4456889999987765
No 341
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.85 E-value=1.5e+02 Score=24.17 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCCCcEEEECCCCc-chHHHHHHcCCCeEEEec
Q 046582 120 PFENLFKEQTPKPCCIISDMGHP-WTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 120 ~l~~ll~~~~~~~DlvI~d~~~~-~~~~~a~~l~iP~v~~~~ 160 (381)
.++.+++- +||+||...... ....--++.|+|++.+..
T Consensus 52 n~E~l~~l---~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 52 NVEKIVAL---KPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred CHHHHhcc---CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 46777775 899999755332 233445677899877643
No 342
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=22.84 E-value=4.2e+02 Score=21.57 Aligned_cols=41 Identities=12% Similarity=-0.066 Sum_probs=23.6
Q ss_pred HHHHHHHhhcCCCCcEEEECCCCc-chHHHHHHcCCCeEEEecc
Q 046582 119 LPFENLFKEQTPKPCCIISDMGHP-WTVDTAAKFNVPRIIFHGF 161 (381)
Q Consensus 119 ~~l~~ll~~~~~~~DlvI~d~~~~-~~~~~a~~l~iP~v~~~~~ 161 (381)
+.+.+.+++ .++|++|+-.+.. ....+-+......+.+.++
T Consensus 69 ~~~~~~l~~--~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 69 EELLELLES--LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHHHHHHHH--TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred hHHHHHHHh--hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 445566666 5899998766543 4445556666666666554
No 343
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=22.84 E-value=71 Score=29.42 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCcEEEEeeCCCcCCC-h---hhHHHHHHHHhhC-CCCEEEEEeCCCc
Q 046582 294 PSSVVYVCLGSICNLK-S---SQLIELGLGLEAS-KKPFIWVTRVGSK 336 (381)
Q Consensus 294 ~~svIyvSfGS~~~~~-~---~~~~~l~~al~~~-~~~~lW~~~~~~~ 336 (381)
++..+++++=...... + +++.++++++.+. +.+|||.+.+.+.
T Consensus 179 ~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~ 226 (346)
T PF02350_consen 179 PKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR 226 (346)
T ss_dssp TSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH
T ss_pred CCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch
Confidence 3458999985555555 3 3445566666665 6789999986543
No 344
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=22.80 E-value=2e+02 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=29.3
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 21 FHFLLLPFL-AQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 21 ~~i~~~~~~-~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
..|++++=+ ..+...+.....++|.++|++|.+++|.
T Consensus 151 t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 151 TTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred cEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 346666655 5688888888889999999999988887
No 345
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.62 E-value=90 Score=25.44 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=20.9
Q ss_pred CCCcEEEECCCCcchHHHHHHcCCCeEEEecc
Q 046582 130 PKPCCIISDMGHPWTVDTAAKFNVPRIIFHGF 161 (381)
Q Consensus 130 ~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~~ 161 (381)
.++|++|.+.. ...+|+++|+|.+.+.++
T Consensus 124 ~G~~viVGg~~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 124 EGVDVIVGGGV---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp TT--EEEESHH---HHHHHHHTTSEEEESS--
T ss_pred cCCcEEECCHH---HHHHHHHcCCcEEEEEec
Confidence 47999998874 468899999999887654
No 346
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=22.54 E-value=1.1e+02 Score=27.06 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 31 QGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 31 ~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
.|.+- ..|+++|.++||+|..+...
T Consensus 9 tGfiG--~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 9 AGFIG--SHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred cccHH--HHHHHHHHhCCCeEEEEeCC
Confidence 46555 88999999999999998743
No 347
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=22.53 E-value=1.6e+02 Score=26.26 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=22.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
+++.+.|- -=..-+......++++||+|++++
T Consensus 4 L~V~AHPD-DE~l~~GGtiA~~a~~G~~V~vV~ 35 (283)
T TIGR03446 4 MAVHAHPD-DESSKGAATMARYAAEGHDVMVVT 35 (283)
T ss_pred EEEEeCCC-cHHHhHHHHHHHHHHCCCeEEEEE
Confidence 45666663 233456677778889999999875
No 348
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.49 E-value=1.5e+02 Score=28.32 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEe
Q 046582 121 FENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~ 159 (381)
+++++++ .++|++|.+.. ...+|+++|+|.+.++
T Consensus 363 l~~~i~~--~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 363 LESLAKE--EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHhhc--cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 4444554 57999998875 4678889999997653
No 349
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=22.48 E-value=1.2e+02 Score=26.36 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCcEEE-ECCCCc-chHHHHHHcCCCeEEEecch
Q 046582 131 KPCCII-SDMGHP-WTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 131 ~~DlvI-~d~~~~-~~~~~a~~l~iP~v~~~~~~ 162 (381)
.||++| +|...- -+..-|.++|||+|.+.-+.
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTd 151 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTD 151 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCC
Confidence 466666 787554 56777999999999986543
No 350
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.46 E-value=1.9e+02 Score=23.98 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCCcEEEECCCC-cchHHHHHHcCCCeEEEecch
Q 046582 120 PFENLFKEQTPKPCCIISDMGH-PWTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 120 ~l~~ll~~~~~~~DlvI~d~~~-~~~~~~a~~l~iP~v~~~~~~ 162 (381)
.+++++++......++|-..+. +++.-+|+++++|.|.+.++-
T Consensus 48 ~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 48 QLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4456666532222466644443 477789999999998887654
No 351
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.30 E-value=1.7e+02 Score=22.85 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=28.8
Q ss_pred hhccccccCCCCcEEEEeeCCCcCC---Chh----hHHHHHHHHhhC--CCCEEEE
Q 046582 284 ECLTWLDSQQPSSVVYVCLGSICNL---KSS----QLIELGLGLEAS--KKPFIWV 330 (381)
Q Consensus 284 ~l~~fLd~~~~~svIyvSfGS~~~~---~~~----~~~~l~~al~~~--~~~~lW~ 330 (381)
.+.+|+...++. +|.+.+|++-.. +.+ .++++++.+++. +.+++|.
T Consensus 31 ~~~~~~~~~~pd-~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~ 85 (157)
T cd01833 31 AAADWVLAAKPD-VVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVA 85 (157)
T ss_pred HhhhccccCCCC-EEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344666665554 999999999752 333 344566666543 4567775
No 352
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=22.30 E-value=1.5e+02 Score=29.20 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEe
Q 046582 121 FENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~ 159 (381)
+++.+++ .++|+||.+. ....+|+++|+|++.++
T Consensus 354 l~~~i~~--~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 354 VEDAIAE--AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHh--cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 3444444 4788888665 34567888888887664
No 353
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=22.14 E-value=1.5e+02 Score=24.84 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
..+++++-.+. .-...++.|.++|++||++++..
T Consensus 10 ~k~vLVIGgG~-----va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 10 NKRVVIVGGGK-----VAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCEEEEECCCH-----HHHHHHHHHHHCCCeEEEEcCCC
Confidence 34677775543 23677899999999999998654
No 354
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.08 E-value=2.2e+02 Score=27.30 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
...++++-.++.|-..-...||..|.++|++|.+++...+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 346788888899999999999999999999999998776543
No 355
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=22.03 E-value=2.2e+02 Score=27.08 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCCCEEEEEeCC
Q 046582 313 LIELGLGLEASKKPFIWVTRVG 334 (381)
Q Consensus 313 ~~~l~~al~~~~~~~lW~~~~~ 334 (381)
+=.++++.++.|.+|+|..+.-
T Consensus 326 LP~li~aV~~~G~~VvW~cDPM 347 (443)
T TIGR01358 326 LPPLLRAVKAAGRRVVWVCDPM 347 (443)
T ss_pred HHHHHHHHHHcCCceEEeecCC
Confidence 4458999999999999998763
No 356
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=22.00 E-value=1.5e+02 Score=29.13 Aligned_cols=35 Identities=9% Similarity=0.241 Sum_probs=23.8
Q ss_pred HHHHHhhcCCCCcEEEECCCCcchHHHHHHcCCCeEEEec
Q 046582 121 FENLFKEQTPKPCCIISDMGHPWTVDTAAKFNVPRIIFHG 160 (381)
Q Consensus 121 l~~ll~~~~~~~DlvI~d~~~~~~~~~a~~l~iP~v~~~~ 160 (381)
+++.+++ .++|++|.+. ....+|+++|+|++.++.
T Consensus 356 i~~~i~~--~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 356 VADAIAA--LEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHh--cCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 3444444 5788888776 355678889999876643
No 357
>PRK08309 short chain dehydrogenase; Provisional
Probab=21.98 E-value=1.6e+02 Score=24.01 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 046582 37 MIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 37 ~~~la~~L~~rGh~Vt~~t~ 56 (381)
...+++.|+++|++|++++-
T Consensus 12 gg~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 12 LKRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred HHHHHHHHHHCcCEEEEEEC
Confidence 35799999999999998753
No 358
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=21.83 E-value=1.7e+02 Score=23.47 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=28.3
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 24 LLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 24 ~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
+..+-++.|-..--..||..|+++|++|.++=..
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 4455678899999999999999999999988544
No 359
>PRK09213 pur operon repressor; Provisional
Probab=21.83 E-value=2.1e+02 Score=25.39 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCCcEEE-ECCCC-cchHHHHHHcCCCeEEEe
Q 046582 130 PKPCCII-SDMGH-PWTVDTAAKFNVPRIIFH 159 (381)
Q Consensus 130 ~~~DlvI-~d~~~-~~~~~~a~~l~iP~v~~~ 159 (381)
.++|+|+ .+.-. +.+..+|..+|+|.+.+-
T Consensus 129 ~~iD~Vvtvet~GIplA~~vA~~L~vp~vivR 160 (271)
T PRK09213 129 KKIDAVMTVETKGIPLAYAVANYLNVPFVIVR 160 (271)
T ss_pred cCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 4688888 44433 367788889999987763
No 360
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.71 E-value=2e+02 Score=20.57 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=24.4
Q ss_pred CCcEEE--ECCCCc----chHHHHHHcCCCeEEEecchHHH
Q 046582 131 KPCCII--SDMGHP----WTVDTAAKFNVPRIIFHGFSCFC 165 (381)
Q Consensus 131 ~~DlvI--~d~~~~----~~~~~a~~l~iP~v~~~~~~~~~ 165 (381)
+.|+|| +|...- .+-..|.+.|+|++..-..+...
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 467776 666542 35577889999999987666544
No 361
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=21.68 E-value=2.2e+02 Score=25.70 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=31.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNAA 61 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~~ 61 (381)
|++.--++-|-...-.++|-.++++|++|-++++.+.+.
T Consensus 4 ~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 4 LFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred EEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 555556677999999999999999999999998887654
No 362
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=21.62 E-value=1.1e+02 Score=28.54 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCc
Q 046582 28 FLAQGHLIPMIDIARLLAQH-GAIVTIVTTPV 58 (381)
Q Consensus 28 ~~~~gH~~p~~~la~~L~~r-Gh~Vt~~t~~~ 58 (381)
.--+|++-..-+||+.|+++ |++|++.+-..
T Consensus 8 IDNfGDIGVcWRLArqLa~e~g~~VrLwvDdl 39 (374)
T PF10093_consen 8 IDNFGDIGVCWRLARQLAAEHGQQVRLWVDDL 39 (374)
T ss_pred ccCCcchHHHHHHHHHHHHHhCCeEEEEECCH
Confidence 34579999999999999987 99999997653
No 363
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=21.36 E-value=91 Score=29.16 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=24.6
Q ss_pred EEEEcCC---CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 23 FLLLPFL---AQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 23 i~~~~~~---~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
+-+=|++ --||..|+..+ +.|++.||+|.++...
T Consensus 35 ~G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 35 VGFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred EeeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 4455555 23999986554 6899999999988644
No 364
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=21.25 E-value=2e+02 Score=24.78 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
.|.++-..+.|-..-...|+++|.++|++|-++-
T Consensus 3 vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 3 AIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3556666788999999999999999999999983
No 365
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=21.18 E-value=1.2e+02 Score=27.66 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTT 56 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~ 56 (381)
|-=++.++.|-.-....|++.|.++|++|.+++-
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSR 73 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQARGYRPAILSR 73 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhcCCceEEEcC
Confidence 3346788999999999999999999999998873
No 366
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.13 E-value=3.6e+02 Score=21.73 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=25.6
Q ss_pred CCCCcEEEECCCCc----------chHHHHHHcCCCeEEEecchH
Q 046582 129 TPKPCCIISDMGHP----------WTVDTAAKFNVPRIIFHGFSC 163 (381)
Q Consensus 129 ~~~~DlvI~d~~~~----------~~~~~a~~l~iP~v~~~~~~~ 163 (381)
.+.||+|++..-.- -+..+|+++|+|.+-.+.+..
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 36899999765431 367889999999887665543
No 367
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=21.12 E-value=1.7e+02 Score=25.56 Aligned_cols=37 Identities=22% Similarity=0.101 Sum_probs=31.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
+++..-++.|.......+|..++++|++|-++.....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 5566677889999999999999999999999987664
No 368
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=21.10 E-value=2.1e+02 Score=26.19 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
..|++..-++.|-..-...||..|+++|++|-++-....
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 456677778889999999999999999999999855433
No 369
>PRK07952 DNA replication protein DnaC; Validated
Probab=21.01 E-value=1.6e+02 Score=25.68 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
.+++.-.++.|-..-..+++.+|.++|+.|.+++....
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 57777778888888899999999999999988865433
No 370
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=20.95 E-value=2.6e+02 Score=19.78 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=24.3
Q ss_pred EEEEeeCCCcC-CChhhHHHHHHHHhh-C-CCCEEEEEeC
Q 046582 297 VVYVCLGSICN-LKSSQLIELGLGLEA-S-KKPFIWVTRV 333 (381)
Q Consensus 297 vIyvSfGS~~~-~~~~~~~~l~~al~~-~-~~~~lW~~~~ 333 (381)
+|++++||-.. -..+....+++.+++ . ...+.+.+..
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~ 41 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQS 41 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEEC
Confidence 78999999865 444566777777765 3 2455555543
No 371
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=20.85 E-value=1.7e+02 Score=27.61 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 29 LAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 29 ~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
++-|-..-...||..|+.+|++|-++=
T Consensus 131 GGvGKTTta~nLA~~LA~~G~rVLlID 157 (405)
T PRK13869 131 GGSGKTTTSAHLAQYLALQGYRVLAVD 157 (405)
T ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEc
Confidence 677999999999999999999998883
No 372
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=20.77 E-value=1.3e+02 Score=25.90 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 046582 30 AQGHLIPMIDIARLLAQHGAIVTIVTTPVN 59 (381)
Q Consensus 30 ~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~ 59 (381)
+.|-..-+..|+++|.++|.+|-+-|+...
T Consensus 7 ~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m 36 (232)
T TIGR03172 7 AGGKTSTMFWLAAEYRKEGYRVLVTTTTRM 36 (232)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEECCccc
Confidence 468899999999999999999998876643
No 373
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=20.71 E-value=3.9e+02 Score=26.07 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhHHHHHHhhhcCCCCeeEEEe
Q 046582 35 IPMIDIARLLAQHGAIVTIVTTPVNAARFKTVLARATQSGLQIRLTEI 82 (381)
Q Consensus 35 ~p~~~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~~ 82 (381)
.=+..+++.|.+.|.++ +++....+.++.. ++.+..+
T Consensus 11 ~~iv~lAk~L~~lGfeI--iATgGTak~L~e~---------GI~v~~V 47 (511)
T TIGR00355 11 TGIVEFAQGLVERGVEL--LSTGGTAKLLAEA---------GVPVTEV 47 (511)
T ss_pred ccHHHHHHHHHHCCCEE--EEechHHHHHHHC---------CCeEEEe
Confidence 34678999999999987 4555666655553 6665555
No 374
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=20.69 E-value=1.3e+02 Score=27.57 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=28.2
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 25 LLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 25 ~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
=++.++.|-.-....|++.|.++|++|.+++
T Consensus 63 NitvGGTGKTP~v~~La~~l~~~G~~~~IlS 93 (338)
T PRK01906 63 NVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (338)
T ss_pred CccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence 3678899999999999999999999999887
No 375
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=20.69 E-value=4.5e+02 Score=21.10 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIV 54 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~ 54 (381)
-|.+.+.++.|-......+|-+.+.+|++|.++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467788889999999999999999999999984
No 376
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=20.68 E-value=2.3e+02 Score=23.90 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=33.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTP 57 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~ 57 (381)
.-+.+.-.++.|...-.++++.+.+++|..|.+++++
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3567888889999999999999999999999999888
No 377
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=20.66 E-value=1.4e+02 Score=23.37 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=25.0
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhC-CCeEEE
Q 046582 24 LLLPFLAQGHLIPMIDIARLLAQH-GAIVTI 53 (381)
Q Consensus 24 ~~~~~~~~gH~~p~~~la~~L~~r-Gh~Vt~ 53 (381)
+.-+.-+..|..-+++||..|.+. |.+|.+
T Consensus 5 I~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 5 ISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 344455779999999999999999 999885
No 378
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.58 E-value=1.6e+02 Score=21.90 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEe
Q 046582 19 SQFHFLLLPFLAQGHLIPMIDIARLLAQHGA-IVTIVT 55 (381)
Q Consensus 19 ~~~~i~~~~~~~~gH~~p~~~la~~L~~rGh-~Vt~~t 55 (381)
.++.++.++.....|......+++.|.+++. ++.++.
T Consensus 49 ~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~v 86 (119)
T cd02067 49 EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLV 86 (119)
T ss_pred cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEE
Confidence 3556777777777888888888888888877 776654
No 379
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=20.47 E-value=2e+02 Score=22.06 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=28.9
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 24 LLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 24 ~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
+|++..+.|-......|++.|.++|.+|-++=+..
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~ 37 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQ 37 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45566667889999999999999999999985543
No 380
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=20.45 E-value=2.4e+02 Score=22.61 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCCcEEEECCCCc---chHHHHHHcCCCeEEE
Q 046582 118 QLPFENLFKEQTPKPCCIISDMGHP---WTVDTAAKFNVPRIIF 158 (381)
Q Consensus 118 ~~~l~~ll~~~~~~~DlvI~d~~~~---~~~~~a~~l~iP~v~~ 158 (381)
.+.+.+++++ .++|+|+.-.-.. .+..+|.+||.|.+.-
T Consensus 72 a~al~~~i~~--~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtd 113 (168)
T cd01715 72 APALVALAKK--EKPSHILAGATSFGKDLAPRVAAKLDVGLISD 113 (168)
T ss_pred HHHHHHHHHh--cCCCEEEECCCccccchHHHHHHHhCCCceee
Confidence 3455666666 4799999655433 6778999999998764
No 381
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=20.36 E-value=2.2e+02 Score=25.52 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
+|.|..-++-|-..-...||..|+++|++|-++=
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4556667788999999999999999999999884
No 382
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=20.33 E-value=1.7e+02 Score=21.99 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 046582 20 QFHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVT 55 (381)
Q Consensus 20 ~~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t 55 (381)
...+++++++.. +...+..+++|.+.|.+++++.
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEe
Confidence 346788887765 4667888999999999988874
No 383
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=20.28 E-value=2.4e+02 Score=27.00 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=18.5
Q ss_pred HHHHHHHHhhCCCCEEEEEeCC
Q 046582 313 LIELGLGLEASKKPFIWVTRVG 334 (381)
Q Consensus 313 ~~~l~~al~~~~~~~lW~~~~~ 334 (381)
+=.++++.++.|.+|+|..+.-
T Consensus 346 LP~Li~aV~~~G~~VvW~cDPM 367 (474)
T PLN02291 346 LPHLIRAVRRAGQIVTWVSDPM 367 (474)
T ss_pred HHHHHHHHHHcCCceEEeecCC
Confidence 3458999999999999998763
No 384
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=20.27 E-value=1.4e+02 Score=25.30 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCCCcEEEECCCC--cchHHHHHHcCCCeEEEecch
Q 046582 120 PFENLFKEQTPKPCCIISDMGH--PWTVDTAAKFNVPRIIFHGFS 162 (381)
Q Consensus 120 ~l~~ll~~~~~~~DlvI~d~~~--~~~~~~a~~l~iP~v~~~~~~ 162 (381)
.++.+++. +||+||..... .-...-....++|++.+....
T Consensus 52 ~~E~i~~l---~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 52 NLEAILAL---KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp -HHHHHHT-----SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred cHHHHHhC---CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 45777776 89999977766 334444557799999986654
No 385
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=20.21 E-value=1.4e+02 Score=26.06 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCcchh
Q 046582 23 FLLLPFLAQGHLIPMIDIARLLAQHG--AIVTIVTTPVNAA 61 (381)
Q Consensus 23 i~~~~~~~~gH~~p~~~la~~L~~rG--h~Vt~~t~~~~~~ 61 (381)
++++..+. | +.|+.+++++|.++| .+||++.......
T Consensus 110 vlliagGt-G-~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~ 148 (252)
T COG0543 110 VLLIAGGT-G-IAPLYAIAKELKEKGDANKVTLLYGARTAK 148 (252)
T ss_pred EEEEeccc-C-HhHHHHHHHHHHhcCCCceEEEEEeccChh
Confidence 55555442 3 689999999999999 9999998665543
No 386
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.09 E-value=1.5e+02 Score=23.92 Aligned_cols=32 Identities=6% Similarity=0.156 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCc
Q 046582 22 HFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPV 58 (381)
Q Consensus 22 ~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~ 58 (381)
.+++++. .|++. .|+.+|.++|-+|.++..+.
T Consensus 108 ~~vLvSg--D~DF~---~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 108 AVALVTR--DADFL---PVINKAKENGKETIVIGAEP 139 (160)
T ss_pred EEEEEec--cHhHH---HHHHHHHHCCCEEEEEeCCC
Confidence 4555543 36654 56788889999999998654
No 387
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=20.03 E-value=1.6e+02 Score=26.15 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 046582 21 FHFLLLPFLAQGHLIPMIDIARLLAQHGAIVTIVTTPVNA 60 (381)
Q Consensus 21 ~~i~~~~~~~~gH~~p~~~la~~L~~rGh~Vt~~t~~~~~ 60 (381)
.+++++..+ .=+.|++.++++|+++|++|+++-.....
T Consensus 99 ~~~llIaGG--iGiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVGGG--VGIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEeCc--CcHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 367766644 24899999999999999999988655443
Done!