BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046583
         (400 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BH02|TOR4A_MOUSE Torsin-4A OS=Mus musculus GN=Tor4a PE=2 SV=1
          Length = 426

 Score = 37.0 bits (84), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 357 EITHWEWQTKANVLPPMKNSTNSSGSNEANCHSKVTTLNDLF 398
           EITH+  Q  + +LPP+++S  S+ + E+     +T+L +L 
Sbjct: 301 EITHFVLQNASRMLPPLRHSAGSTQTEESPAQELLTSLRELL 342


>sp|P58021|TM9S2_MOUSE Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2
           SV=1
          Length = 662

 Score = 37.0 bits (84), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 250 GWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 308
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 346 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 404

Query: 309 LWQLSGIPCEH-ACRCIHSWADK 330
           LW L G P  + A R   S+  +
Sbjct: 405 LWVLLGTPAGYVAARFYKSFGGE 427


>sp|Q66HG5|TM9S2_RAT Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2
           PE=2 SV=1
          Length = 663

 Score = 37.0 bits (84), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 250 GWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 308
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 347 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 405

Query: 309 LWQLSGIPCEH-ACRCIHSWADK 330
           LW L G P  + A R   S+  +
Sbjct: 406 LWVLLGTPAGYVAARFYKSFGGE 428


>sp|Q99805|TM9S2_HUMAN Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1
           SV=1
          Length = 663

 Score = 37.0 bits (84), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 250 GWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 308
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 347 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 405

Query: 309 LWQLSGIPCEHA 320
           LW L G P  + 
Sbjct: 406 LWVLLGTPAGYV 417


>sp|Q5R8Y6|TM9S2_PONAB Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2
           SV=1
          Length = 663

 Score = 36.6 bits (83), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 250 GWEWVYDKITPTARQQIIHNVFQSDGWNVDVPSNNAVSFVSRHGFVFEVNR-ELMTCSCR 308
           GW+ V+  I    R+ ++ +VF   G  + + +   + F    GF+   NR  LMTC+  
Sbjct: 347 GWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACL-GFLSPANRGALMTCAVV 405

Query: 309 LWQLSGIPCEH-ACRCIHSWADK 330
           LW L G P  + A R   S+  +
Sbjct: 406 LWVLLGTPAGYVAARFYKSFGGE 428


>sp|Q3EBQ3|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2
           PE=2 SV=1
          Length = 807

 Score = 32.3 bits (72), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 288 FVSRHGFVFEVNRELMT--CSCRLWQLSGIPCEHACRCIHSW--ADKLDKYVHRLWS 340
           F  R  F   +N EL+   CSC L++  G  C+HA   + S   +    +Y+ + WS
Sbjct: 493 FEERQNFFVALNNELLDACCSCHLFEYQGFLCKHAILVLQSADVSRVPSQYILKRWS 549


>sp|Q6WNV7|VP3_ROTEL Protein VP3 OS=Rotavirus A (isolate Equine/United Kingdom/L338/1988
           G13-P12[18]-I6-Rx-Cx-M6-A6-Nx-Tx-Ex-Hx) PE=3 SV=1
          Length = 835

 Score = 32.0 bits (71), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 19/107 (17%)

Query: 3   DINDRNIVIIETTTDHPLSPEVFNRMFVFLYDTAYAFKTRCRKLITIDGWEIDG----PY 58
           D+++ N  +I T  ++ +S  V+N +  F Y+ ++  K R   L ++D  +I+G     +
Sbjct: 592 DLSNNNFNLIGTNVENSVSGHVYNAIIYFRYNYSFDLK-RWIHLHSVDKVKIEGGRYYEH 650

Query: 59  KSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFER 105
             + L+  CR   +      F ++Q++        LT L Y    ER
Sbjct: 651 APIELIYACRSAKE------FAKMQDD--------LTTLRYANEIER 683


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,459,713
Number of Sequences: 539616
Number of extensions: 6214063
Number of successful extensions: 11612
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11611
Number of HSP's gapped (non-prelim): 9
length of query: 400
length of database: 191,569,459
effective HSP length: 120
effective length of query: 280
effective length of database: 126,815,539
effective search space: 35508350920
effective search space used: 35508350920
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)