Query 046583
Match_columns 400
No_of_seqs 219 out of 1458
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 00:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hot_A Transposable element ma 86.9 5.1 0.00017 37.0 11.3 71 44-117 150-252 (345)
2 3kks_A Integrase, IN; beta-str 74.4 9.9 0.00034 29.9 7.4 65 45-121 3-67 (152)
3 3l3u_A POL polyprotein; DNA in 62.6 21 0.00072 28.5 7.1 66 43-120 8-73 (163)
4 1bco_A MUA domain II, bacterio 62.5 17 0.00057 33.4 7.1 73 43-120 15-95 (327)
5 1c0m_A Protein (integrase); HI 60.2 20 0.00067 31.1 6.8 72 43-121 9-80 (238)
6 1cxq_A Avian sarcoma virus int 59.5 24 0.00083 28.2 6.9 72 43-121 10-81 (162)
7 3f2k_A Histone-lysine N-methyl 54.0 33 0.0011 29.5 7.1 120 55-177 66-212 (226)
8 3av9_A Integrase, IN; protein- 52.9 36 0.0012 27.9 7.0 67 42-120 27-93 (183)
9 2bw3_A Transposase; DNA recomb 51.9 53 0.0018 32.1 9.2 98 44-145 99-200 (534)
10 2x78_A Integrase; viral protei 49.1 42 0.0014 27.7 6.9 71 43-121 12-83 (200)
11 3hph_A Integrase, IN; protein- 47.9 51 0.0017 27.7 7.3 65 45-121 61-125 (219)
12 2nrr_A Uvrabc system protein C 44.5 36 0.0012 27.8 5.3 41 87-128 60-100 (159)
13 2l0z_A Glycoprotein G2; zinc-b 41.9 12 0.00042 22.7 1.6 14 303-316 22-35 (42)
14 2qh9_A UPF0215 protein AF_1433 40.4 1.2E+02 0.0041 25.2 8.2 66 45-117 8-74 (184)
15 1c6v_A Protein (SIV integrase) 39.0 1E+02 0.0035 23.9 7.6 65 43-119 8-72 (164)
16 2nrt_A Uvrabc system protein C 38.6 55 0.0019 28.2 5.9 41 87-128 65-105 (220)
17 3f9k_A Integrase; protein-prot 37.7 91 0.0031 25.9 7.3 63 45-119 60-122 (210)
18 2lsn_A Reverse transcriptase; 36.9 1.5E+02 0.0051 24.0 8.2 80 43-125 6-93 (165)
19 1ex4_A Integrase; SH3-like dom 36.5 66 0.0022 27.6 6.3 66 44-121 9-74 (239)
20 1k6y_A Integrase; HIV-1, domai 27.8 97 0.0033 25.7 5.8 65 44-120 58-122 (212)
21 3aa1_C 23MER peptide from plec 26.9 28 0.00095 18.5 1.2 15 368-382 10-24 (26)
22 3u3g_D Ribonuclease H, RNAse H 26.6 2.1E+02 0.0071 21.6 8.3 79 46-127 5-89 (140)
23 2f7t_A MOS1 transposase; RNAse 26.3 2.1E+02 0.0072 24.1 7.8 56 60-118 71-135 (227)
24 3hst_B Protein RV2228C/MT2287; 23.8 2.4E+02 0.0082 21.4 10.1 81 45-127 4-86 (141)
25 1jl1_A Ribonuclease HI; RNAse 20.7 2.6E+02 0.0089 22.0 6.8 75 45-125 5-80 (155)
No 1
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=86.87 E-value=5.1 Score=36.98 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=48.0
Q ss_pred ccEEEeeceeecCC-----------------------cCeEEEEEEEecCCCCeeEeEEEEee---ccchhcHHHHHHHH
Q 046583 44 RKLITIDGWEIDGP-----------------------YKSVMLVAVCRDGNDAVLPIAFCEVQ---EENLDSWAFFLTNL 97 (400)
Q Consensus 44 ~~vi~iD~t~~~~~-----------------------y~~~ll~a~g~d~~~~~~~la~a~~~---~E~~esw~w~l~~l 97 (400)
..||+.|-+..... .++.++++.+++.+| .+++.+++ .-+.+.|.-+|+.+
T Consensus 150 ~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~ 226 (345)
T 3hot_A 150 HRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINL 226 (345)
T ss_dssp GGEEEEEEEEEESCCCCCCEEEECSSSCCCCEECCCTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHH
T ss_pred HhhhcccceeEEecCccceeeeccCCCCCCCCcCccCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHH
Confidence 57888888776532 445677777778777 56777776 56788888888876
Q ss_pred hhcccc--cC----CCCeEEEccCch
Q 046583 98 TYGLRF--ER----GEGLCILADGDN 117 (400)
Q Consensus 98 ~~~l~~--~~----~~~~~iisD~~~ 117 (400)
...+.. .. ..+.+++.|...
T Consensus 227 ~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 227 NRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp HHHHHHHSTTCC---CCCEEECCCCT
T ss_pred HHHHHHhchhhhcCCCceEEEECCCC
Confidence 543210 11 346789999865
No 2
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=74.37 E-value=9.9 Score=29.89 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=44.2
Q ss_pred cEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHH
Q 046583 45 KLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDE 121 (400)
Q Consensus 45 ~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~ 121 (400)
.++.+|.|+..++ ++++.+|...+.. +++.+- +++.+...-+|..+.... . |..|.||+......
T Consensus 3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~----g-p~~i~sDnG~~f~s 67 (152)
T 3kks_A 3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVIP-EETALQVALCILQLIQRY----T-VLHLHSDNGPCFTA 67 (152)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEES-SSCHHHHHHHHHHHHHHS----C-CSEEEECSCHHHHS
T ss_pred cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEeC-CcCHHHHHHHHHHHHHHh----C-CcEEecCCchHhhH
Confidence 5788999998432 4556677665543 666554 677777766666665543 2 89999999887654
No 3
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=62.62 E-value=21 Score=28.48 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=44.9
Q ss_pred CccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHH
Q 046583 43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVD 120 (400)
Q Consensus 43 ~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~ 120 (400)
-..++.+|.|+..++ ++++.+|...+. ++++.+ .+++.+.-.-+|..+....| +.+|.||+.....
T Consensus 8 p~~~w~~D~t~~~g~-----y~~~~iD~~sr~-~~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~i~sD~G~~f~ 73 (163)
T 3l3u_A 8 SPGIWQLDCTHLEGK-----VILVAVHVASGY-IEAEVI-PAETGQETAYFLLKLAGRWP-----VKTVHTDNGSNFT 73 (163)
T ss_dssp CTTEEEEEEEEETTE-----EEEEEEETTTCC-EEEEEE-SSCCHHHHHHHHHHHHHHSC-----CCEEEECCCGGGG
T ss_pred CCCEEEEEecccCCc-----EEEEEEecCCCc-EEEEEe-CCCcHHHHHHHHHHHHHHcC-----CcEEeecChHhhh
Confidence 456899999998653 466677776654 366666 45577666666666655432 4789999988754
No 4
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=62.46 E-value=17 Score=33.41 Aligned_cols=73 Identities=15% Similarity=0.034 Sum_probs=51.2
Q ss_pred CccEEEeeceeecCC----cC--eEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCe--EEEcc
Q 046583 43 CRKLITIDGWEIDGP----YK--SVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGL--CILAD 114 (400)
Q Consensus 43 ~~~vi~iD~t~~~~~----y~--~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~--~iisD 114 (400)
...++.+|+|++... .+ +...+.+.+|..... ++||.+..+|+.++-.-.|+......| .|. .|.+|
T Consensus 15 p~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR~-ivg~~~~~~~~~~~v~~aL~~a~~~~G----~P~~~~i~sD 89 (327)
T 1bco_A 15 AMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRK-ILGWRCDVSENIDSIRLSFMDVVTRYG----IPEDFHITID 89 (327)
T ss_dssp TTTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTCC-EEEEEEESSCCHHHHHHHHHHHHHHHC----EESSCEEECC
T ss_pred CCcEEEecCCEEEEEEECCCCccceeEEEEEEECCCCc-EEEEEEECCCCHHHHHHHHHHHHHhcC----CCCCcEEEee
Confidence 456999999987543 12 134566667876654 689999999988887777766655433 355 99999
Q ss_pred CchhHH
Q 046583 115 GDNGVD 120 (400)
Q Consensus 115 ~~~~l~ 120 (400)
+.....
T Consensus 90 nG~~f~ 95 (327)
T 1bco_A 90 NTRGAA 95 (327)
T ss_dssp CTTSTT
T ss_pred Cchhhc
Confidence 987653
No 5
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=60.22 E-value=20 Score=31.11 Aligned_cols=72 Identities=10% Similarity=-0.122 Sum_probs=48.8
Q ss_pred CccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHH
Q 046583 43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDE 121 (400)
Q Consensus 43 ~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~ 121 (400)
-..++.+|-|+.... ++..++++.+|...+ +++|+.+- +++.+.-..+|+.+....| .|.+|.||+.....+
T Consensus 9 P~~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 9 PLQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG----RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TTSEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEEECSCHHHHS
T ss_pred CCCEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC----CCcEEEECCCCcccc
Confidence 345899999987643 333555666776554 45677776 7777777777766655543 377999999887643
No 6
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=59.54 E-value=24 Score=28.17 Aligned_cols=72 Identities=10% Similarity=-0.120 Sum_probs=47.6
Q ss_pred CccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHH
Q 046583 43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDE 121 (400)
Q Consensus 43 ~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~ 121 (400)
...++.+|-|+.... +|..++++.+|...+. ++|+.+- +++.+.-.-+|+.+....| .|..|.||+......
T Consensus 10 p~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 10 PLQIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVLG----RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCCEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEECCSCHHHHS
T ss_pred CCCEEEeeeeecccC-CCCEEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHHC----CCeEEEeCCchhhhh
Confidence 446899999987543 3345556667876544 5677765 6666665566665554432 467999999887653
No 7
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=53.98 E-value=33 Score=29.52 Aligned_cols=120 Identities=11% Similarity=0.143 Sum_probs=62.1
Q ss_pred cCCcCeEEEEEEEecCCCCeeEeEEEEe---eccchhcHHHHHHHHhhcc----c-ccCCCCeEEEccCchhH-----HH
Q 046583 55 DGPYKSVMLVAVCRDGNDAVLPIAFCEV---QEENLDSWAFFLTNLTYGL----R-FERGEGLCILADGDNGV-----DE 121 (400)
Q Consensus 55 ~~~y~~~ll~a~g~d~~~~~~~la~a~~---~~E~~esw~w~l~~l~~~l----~-~~~~~~~~iisD~~~~l-----~~ 121 (400)
++++++.+++.++.+++|.+. +.++ +.-|.+.|.-+|+.+...+ + +......+++.|....= ..
T Consensus 66 ~~~~~~~vmv~~~~s~~G~~~---~~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~H~~~~~~~ 142 (226)
T 3f2k_A 66 PILHPKKVMVTIWWSAAGLIH---YSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTLQ 142 (226)
T ss_dssp ---CCCEEEEEEEEETTEEEE---EEECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHHHHSTTHHH
T ss_pred cccCCcceEEEEEeecCCcEE---EEEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCccchhhhHHH
Confidence 445667888889999888663 4455 3567788888887653221 1 11245678899986532 22
Q ss_pred HHHhh------c----CCcchhh-cHhhhhhhhhc--cCCC-hhHHHHHHHHhhcccHHHHHHHHHHHHh
Q 046583 122 AVEEF------L----PYAVYRQ-CCFSLYGRMVG--KFPD-VGVHSAFWGACRSTDRKNFIYHMSIIET 177 (400)
Q Consensus 122 Ai~~v------f----P~a~h~~-C~~Hi~~n~~~--~~~~-~~~~~~~~~~~~a~~~~~f~~~~~~l~~ 177 (400)
.+.+. + |+..-.- -.|..+++... .+.+ .++.+.+..+..+.+.+.+....+.|..
T Consensus 143 ~l~~~~~~~~~~P~ySPdlnpie~~~w~~lk~~l~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~ 212 (226)
T 3f2k_A 143 KLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQGKRFHNQQDAENAFQEFVESQSTDFYATGINQLIS 212 (226)
T ss_dssp HHHHHTCEECCCCTTCGGGCHHHHTHHHHHHHHHTTCBCSSHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHhhcceeecCCCCCCCcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHhHHhhcCcHHHHHHHHHHHH
Confidence 23222 1 2222221 22333333221 1223 2455555555556666666666655543
No 8
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=52.86 E-value=36 Score=27.89 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=40.6
Q ss_pred cCccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHH
Q 046583 42 RCRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVD 120 (400)
Q Consensus 42 ~~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~ 120 (400)
.-..++.+|-++..++ .+++++ |..-+. ++|+.+-. ++.+.-.-++..+.... ++.+|.+|+.....
T Consensus 27 ~p~~~w~~D~~~~~g~---~~l~~v--D~~Sr~-~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~ef~ 93 (183)
T 3av9_A 27 SSPGIWQLDCTHLEGK---VILVAV--HVASGY-IEAEVIPA-ETGQETAYFLLKLAGRW-----PVKTVHTDNGSNFT 93 (183)
T ss_dssp CCTTEEEEEEEEETTE---EEEEEE--ETTTTE-EEEEEESS-CCHHHHHHHHHHHHHHS-----CCCEEECSSHHHHH
T ss_pred CCCCEEEEeccccCCc---EEEEEE--ECCCCC-EEEEEeCC-ccchHHHHHHHHHHHHc-----CCcEEEecCchhcc
Confidence 4567899999998432 244444 765554 46776554 44444444444443332 24899999988764
No 9
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=51.91 E-value=53 Score=32.10 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=61.1
Q ss_pred ccEEEeeceeec-CCcCeEEEEEEEec-CCCCeeEeEEEEeec--cchhcHHHHHHHHhhcccccCCCCeEEEccCchhH
Q 046583 44 RKLITIDGWEID-GPYKSVMLVAVCRD-GNDAVLPIAFCEVQE--ENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGV 119 (400)
Q Consensus 44 ~~vi~iD~t~~~-~~y~~~ll~a~g~d-~~~~~~~la~a~~~~--E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l 119 (400)
+=-|.+|+.--. +.....-+++-.++ ..-+..+|++.-++. .+.++-...+..+.+..|+....-+.++||....+
T Consensus 99 ~~sl~~D~wt~~~~~~~~l~i~v~~i~~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~ 178 (534)
T 2bw3_A 99 GASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANV 178 (534)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHH
T ss_pred ceEEEEecccCCCCCcceeEEEEEEeeCCceEEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHH
Confidence 445889987665 23222222332333 222346778877764 55566555555555555654334677899999998
Q ss_pred HHHHHhhcCCcchhhcHhhhhhhhhc
Q 046583 120 DEAVEEFLPYAVYRQCCFSLYGRMVG 145 (400)
Q Consensus 120 ~~Ai~~vfP~a~h~~C~~Hi~~n~~~ 145 (400)
..|++.. .|..|.-|...-+.+
T Consensus 179 ~~~~~~~----~~i~C~~H~lnLi~~ 200 (534)
T 2bw3_A 179 VKSLANN----IRINCSSHLLSNVLE 200 (534)
T ss_dssp HHHTTTS----EEEECHHHHHHHHHH
T ss_pred HHHHhcC----cccccHHHHHHHHHH
Confidence 8887753 588999998876654
No 10
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=49.15 E-value=42 Score=27.70 Aligned_cols=71 Identities=15% Similarity=0.033 Sum_probs=45.9
Q ss_pred CccEEEeec-eeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHH
Q 046583 43 CRKLITIDG-WEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDE 121 (400)
Q Consensus 43 ~~~vi~iD~-t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~ 121 (400)
...++.+|- ++.... +|..++++.+|..-+. .+++.+ .+.+.+...-+|+.+.. ...|..|.||+.....+
T Consensus 12 p~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l~~~~~-----~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 12 PFDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSLNVLTS-----IAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TTSEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHHHHHTT-----TCCCSEEEECSCHHHHS
T ss_pred cccEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHHHHHHH-----hCCCcEEEecCCcceeh
Confidence 345889996 455433 4566777778876554 566766 66666665555554432 24578999999876543
No 11
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=47.86 E-value=51 Score=27.74 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=42.4
Q ss_pred cEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHH
Q 046583 45 KLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDE 121 (400)
Q Consensus 45 ~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~ 121 (400)
.++.+|-|+..++ ++++.+|..-+.. .++.+ .+++.+...-+|..+.... . |..|.||+......
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~----g-p~~i~sDnG~~F~s 125 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAERV-KGETGQEFRVQTMKWYAMF----A-PKSLQSDNGPAFVA 125 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SCCCHHHHHHHHHHHHHHH----C-CCEEEECCCHHHHS
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEEe-CCCCHHHHHHHHHHHHHHh----C-CcEEEeCCCchhhh
Confidence 5788999977443 5566677666554 55654 4555656555655554432 2 88999999987654
No 12
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=44.46 E-value=36 Score=27.76 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=30.1
Q ss_pred hhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHHHHhhcC
Q 046583 87 LDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 128 (400)
Q Consensus 87 ~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~Ai~~vfP 128 (400)
.+.|.-.=|.+..++... ..|-.|+.|+.+|-.+|+.+++-
T Consensus 60 ~DDya~M~Evl~RR~~r~-~~PDLilIDGGkgQl~aA~~vl~ 100 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYSKH-PLPNLLFVDGGIGQVNAAIEALK 100 (159)
T ss_dssp -CHHHHHHHHHHHHHTTS-CCCSEEEESSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccC-CCCCEEEEeCCHHHHHHHHHHHH
Confidence 367777777666654322 46888999999999999998863
No 13
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=41.88 E-value=12 Score=22.73 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=12.6
Q ss_pred CccccCccccCCCC
Q 046583 303 MTCSCRLWQLSGIP 316 (400)
Q Consensus 303 ~~CsC~~~~~~GiP 316 (400)
..|+|+.|...|.|
T Consensus 22 ~~C~CG~y~~~~kp 35 (42)
T 2l0z_A 22 GGCRCGKYPNLKKP 35 (42)
T ss_dssp SSBTTTTBCCCCCC
T ss_pred ceeccccccCCCCc
Confidence 57999999999887
No 14
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=40.38 E-value=1.2e+02 Score=25.20 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=49.7
Q ss_pred cEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCC-CCeEEEccCch
Q 046583 45 KLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERG-EGLCILADGDN 117 (400)
Q Consensus 45 ~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~-~~~~iisD~~~ 117 (400)
.|+.+|-.|. . +...++.+-.+ +..+.-++|+.+.-...++..-+++.+++. . .. .+-+|+.|+.-
T Consensus 8 rv~GiDds~~--~-~~~~l~gvv~~-~~~v~g~~~~~~~vdG~dat~~i~~~~~~l-~--~~p~~~vvllDG~g 74 (184)
T 2qh9_A 8 RFLGIDDSFD--D-RKCCVVGCVTC-GGYVEGFLYTEIDIDGLDATDKLISMVRRS-K--FREQIKCIFLPGIT 74 (184)
T ss_dssp EEEEEEEEEC--S-SCEEEEEEEEE-TTEEEEEEEEEECTTCSCHHHHHHHHHTTC-T--TTTTEEEEEESSSE
T ss_pred EEEEEEcccC--C-CceEEEEEEEE-CCEEEEEEEEEEEECChhHHHHHHHHHHhc-C--CCCCCcEEEECCEe
Confidence 5899999987 2 45555555566 788999999999999999999888877653 2 12 25899999875
No 15
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=39.01 E-value=1e+02 Score=23.94 Aligned_cols=65 Identities=15% Similarity=0.012 Sum_probs=40.5
Q ss_pred CccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhH
Q 046583 43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGV 119 (400)
Q Consensus 43 ~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l 119 (400)
-..++.+|-++. +|. +..+.+|..-+ +.+++.+- +++.+...-++..+.... +|.+|.+|+....
T Consensus 8 ~~~~w~~D~~~~----~g~-~~l~~iD~~Sr-~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~i~sDnG~~f 72 (164)
T 1c6v_A 8 DLGTWQMDCTHL----EGK-IVIVAVHVASG-FIEAEVIP-QETGRQTALFLLKLAGRW-----PITHLHTDNGANF 72 (164)
T ss_dssp CTTEEEEEEEEE----TTE-EEEEEECTTSC-CEEEEECS-SCSHHHHHHHHHHHHTTS-----CCCEEECCCCSST
T ss_pred CCCEEEEeeccc----CCE-EEEEEEEccCC-EEEEEEcC-CCchHHHHHHHHHHHHhc-----CCCEEEeCCchhh
Confidence 346789999998 233 23333887655 45666554 456666655555544332 3689999998764
No 16
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=38.56 E-value=55 Score=28.22 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=31.3
Q ss_pred hhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHHHHhhcC
Q 046583 87 LDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 128 (400)
Q Consensus 87 ~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~Ai~~vfP 128 (400)
.++|.-.=|.+..++... ..|-.|+.|+.+|-.+|+.+++-
T Consensus 65 ~DDya~m~Evl~RR~~r~-~~PDLiliDGGkgQl~~a~~vl~ 105 (220)
T 2nrt_A 65 PDDYESIRTVVKRRYSKH-PLPNLLFVDGGIGQVNAAIEALK 105 (220)
T ss_dssp CCHHHHHHHHHHHHHTTS-CCCSEEEESSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccC-CCCCEEEEeCCHHHHHHHHHHHH
Confidence 467777777776664322 56888999999999999998873
No 17
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=37.74 E-value=91 Score=25.92 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=41.5
Q ss_pred cEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhH
Q 046583 45 KLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGV 119 (400)
Q Consensus 45 ~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l 119 (400)
.++.+|-|+..++ ++++.+|..-+ ++.++.+-. ++.+.-.-++..+....| +..|.||+....
T Consensus 60 ~~w~~D~~~~~~~-----y~l~~vD~~sr-~~~~~~~~~-~~~~~~~~~l~~~~~~~g-----~~~i~sDnG~~F 122 (210)
T 3f9k_A 60 GTWQMDCTHLEGK-----IIIVAVHVASG-FIEAEVIPQ-ESGRQTALFLLKLASRWP-----ITHLHTDNGANF 122 (210)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEESS-CCHHHHHHHHHHHHTTSC-----CSEEEECCCTTT
T ss_pred CeEeEeecccCCe-----EEEEEEEcCCC-cEEEEEeCC-cchHHHHHHHHHHHHHcC-----CCEEEeCCCchh
Confidence 4789999888543 35566676665 566666554 677666666666655432 235999998874
No 18
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=36.94 E-value=1.5e+02 Score=24.02 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=44.7
Q ss_pred CccEEEeeceeecCCcC-----eEEEEEEEecCCCCeeEeEEEEeeccchhcH---HHHHHHHhhcccccCCCCeEEEcc
Q 046583 43 CRKLITIDGWEIDGPYK-----SVMLVAVCRDGNDAVLPIAFCEVQEENLDSW---AFFLTNLTYGLRFERGEGLCILAD 114 (400)
Q Consensus 43 ~~~vi~iD~t~~~~~y~-----~~ll~a~g~d~~~~~~~la~a~~~~E~~esw---~w~l~~l~~~l~~~~~~~~~iisD 114 (400)
+.-||+.||..+.|+.. +-.-++++.+.....+.-++........+.- .-+...++.++. ...++.|.||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~--~~~~v~I~TD 83 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALK--IPGPVLVITD 83 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHH--SSSCEEEEES
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhc--CCCeEEEEeC
Confidence 34579999999988653 3455555655555555555665554444332 222233333322 2457899999
Q ss_pred CchhHHHHHHh
Q 046583 115 GDNGVDEAVEE 125 (400)
Q Consensus 115 ~~~~l~~Ai~~ 125 (400)
-.-.+ ++|.+
T Consensus 84 S~Yvi-~~it~ 93 (165)
T 2lsn_A 84 SFYVA-ESANK 93 (165)
T ss_dssp CHHHH-HHHHT
T ss_pred hHHHH-hhhhh
Confidence 76543 44443
No 19
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=36.48 E-value=66 Score=27.57 Aligned_cols=66 Identities=23% Similarity=0.160 Sum_probs=39.5
Q ss_pred ccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHH
Q 046583 44 RKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDE 121 (400)
Q Consensus 44 ~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~ 121 (400)
..++.+|.|+..++ .+++++ |...+ +++++.+-. ++.+...-++..+... .++.+|.||+.....+
T Consensus 9 ~~~w~~D~t~~~g~---~~l~~v--D~~Sr-~i~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~i~sDnG~eF~s 74 (239)
T 1ex4_A 9 PGIWQLDCTHLEGK---VILVAV--HVASG-YIEAEVIPA-ETGQETAYFLLKLAGR-----WPVKTIHTDNGSNFTG 74 (239)
T ss_dssp GGEEEEEEEEETTE---EEEEEE--CTTTC-CEEEECCSS-SSTTHHHHHHHHHHHH-----SCCCEEEECCCHHHHC
T ss_pred CCEEEEeccccCCe---EEEEEE--ECCCC-eEEEEEeCC-CCHHHHHHHHHHHHHh-----cCCcEEEecCcHHHHH
Confidence 45899999998332 344444 65444 456776554 4444444444334332 2358999999987643
No 20
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=27.85 E-value=97 Score=25.69 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=37.8
Q ss_pred ccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHH
Q 046583 44 RKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVD 120 (400)
Q Consensus 44 ~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~ 120 (400)
..++.+|-++..++ .+++++ |..-+ +++++.+-.. +.+...-++..+.... ++.+|.||+.....
T Consensus 58 ~~~w~~D~~~~~~~---~~l~~v--D~~Sr-~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~i~sDnG~~f~ 122 (212)
T 1k6y_A 58 PGIWQLDCTHLEGK---VILVAV--HVASG-YIEAEVIPAE-TGQETAYFLLKLAGRW-----PVKTVHTDNGSNFT 122 (212)
T ss_dssp TTEEEEEEEEETTE---EEEEEE--ETTTT-EEEEEEESSC-CHHHHHHHHHHHHHHS-----CCCEEECCCSTTTT
T ss_pred CCeeeEEEecCCCe---EEEEEE--EccCC-cEEEEEecCc-chHHHHHHHHHHHHhc-----CCeEEEcCCCcccc
Confidence 45789999988322 244444 65444 4556665544 4444444444444332 24899999988753
No 21
>3aa1_C 23MER peptide from pleckstrin homology domain-CON family O member 1; actin capping protein, barbed END regulation; HET: MES; 1.90A {Homo sapiens}
Probab=26.86 E-value=28 Score=18.53 Aligned_cols=15 Identities=7% Similarity=0.049 Sum_probs=9.7
Q ss_pred ccCCCCCCCCCCCCC
Q 046583 368 NVLPPMKNSTNSSGS 382 (400)
Q Consensus 368 ~~~pP~~~r~~~~~~ 382 (400)
...-|.-||.|+||.
T Consensus 10 rakip~~rr~ptrgh 24 (26)
T 3aa1_C 10 RAKIQHSRRPPTRGX 24 (26)
T ss_dssp SCCCCSCCCCCCC--
T ss_pred hhcCcccccCCCCCC
Confidence 344578889999985
No 22
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=26.62 E-value=2.1e+02 Score=21.61 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=42.4
Q ss_pred EEEeeceeecCCcCeEEEEEEEecCCCCee-EeEEEE-eeccchhcHHHHHHHHhhcccccCCC----CeEEEccCchhH
Q 046583 46 LITIDGWEIDGPYKSVMLVAVCRDGNDAVL-PIAFCE-VQEENLDSWAFFLTNLTYGLRFERGE----GLCILADGDNGV 119 (400)
Q Consensus 46 vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~-~la~a~-~~~E~~esw~w~l~~l~~~l~~~~~~----~~~iisD~~~~l 119 (400)
+|++||.+..+.-.+-.-+++ .+.+|+.+ -++..+ -.+-+..-+.-++..|+.+... +.. ++.|.||- +.+
T Consensus 5 ~iy~DGs~~~n~g~~G~G~v~-~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~-~~~~~~~~v~i~tDS-~~v 81 (140)
T 3u3g_D 5 IIYTDGGARGNPGPAGIGVVI-TDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMF-GDKLVDMEVEVRMDS-ELI 81 (140)
T ss_dssp EEEEEEEESSTTEEEEEEEEE-ECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGG-GGGGTTCEEEEEESC-HHH
T ss_pred EEEEecCCCCCCCCcEEEEEE-EeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHc-CCCCCCceEEEEeCh-HHH
Confidence 689999998765333333333 45566543 222221 1223334455666666654322 233 78899996 455
Q ss_pred HHHHHhhc
Q 046583 120 DEAVEEFL 127 (400)
Q Consensus 120 ~~Ai~~vf 127 (400)
.+++..-+
T Consensus 82 i~~i~~~~ 89 (140)
T 3u3g_D 82 VRQMQGVY 89 (140)
T ss_dssp HHHHTTSS
T ss_pred HHHhCCCc
Confidence 56666644
No 23
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=26.27 E-value=2.1e+02 Score=24.06 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=32.8
Q ss_pred eEEEEEEEecCCCCeeEeEEEEe---eccchhcHHHHHHHHhhccc-----ccCCCC-eEEEccCchh
Q 046583 60 SVMLVAVCRDGNDAVLPIAFCEV---QEENLDSWAFFLTNLTYGLR-----FERGEG-LCILADGDNG 118 (400)
Q Consensus 60 ~~ll~a~g~d~~~~~~~la~a~~---~~E~~esw~w~l~~l~~~l~-----~~~~~~-~~iisD~~~~ 118 (400)
+.+++..+++.+|. +++.++ ..-|.+.|.-+|+.+...+. +....+ .+++.|....
T Consensus 71 ~~vmv~g~~~~~G~---~~~~~~~~~~~in~~~y~~~L~~l~~~~~~~~p~~~~~~~~~~~~~Dna~~ 135 (227)
T 2f7t_A 71 KKTMLCVWWDQSGV---IYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPS 135 (227)
T ss_dssp -EEEEEEEEETTEE---EEEEECCTTCCCCHHHHHHHHHHHHHHHHHHCHHHHTTSSCCEEECCCCGG
T ss_pred CeeEEEEEEecCce---EEeEecCCCceecHHHHHHHHHHHHHHHHHhChHhhccCCceEEEECCCch
Confidence 44566666766554 344455 34567888888886654321 112344 7899998763
No 24
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=23.83 E-value=2.4e+02 Score=21.37 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=43.3
Q ss_pred cEEEeeceeecCCcCeEEEEEEEecCCCCee-EeEEEE-eeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHH
Q 046583 45 KLITIDGWEIDGPYKSVMLVAVCRDGNDAVL-PIAFCE-VQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEA 122 (400)
Q Consensus 45 ~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~-~la~a~-~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~A 122 (400)
=+|++||.+..+.-.+-.-+++.-+.+|..+ -++..+ ..+-+..-+.-++..|+.+... +..++.|.||- +.+.++
T Consensus 4 ~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~-~~~~v~i~tDS-~~vv~~ 81 (141)
T 3hst_B 4 VVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKL-GATEAAVLMDS-KLVVEQ 81 (141)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHH-TCSEEEEEESC-HHHHHH
T ss_pred EEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHC-CCceEEEEeCh-HHHHHH
Confidence 4689999998664333333333332224322 222222 2233445566666666654322 24678899996 455566
Q ss_pred HHhhc
Q 046583 123 VEEFL 127 (400)
Q Consensus 123 i~~vf 127 (400)
+..-+
T Consensus 82 i~~~~ 86 (141)
T 3hst_B 82 MSGRW 86 (141)
T ss_dssp HTTSS
T ss_pred HhCCc
Confidence 66644
No 25
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=20.72 E-value=2.6e+02 Score=21.97 Aligned_cols=75 Identities=8% Similarity=-0.071 Sum_probs=38.6
Q ss_pred cEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEE-eeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHHH
Q 046583 45 KLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCE-VQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAV 123 (400)
Q Consensus 45 ~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~-~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~Ai 123 (400)
-+|++||.+..+.-.+-..+++..+ ++...+.-.+ ..+-+..-+.-++..|+.+. ...++.|.||-... .++|
T Consensus 5 ~~iytDGs~~~n~~~~G~G~v~~~~--~~~~~~~~~~~~~tn~~aEl~A~~~aL~~~~---~~~~v~I~tDS~~v-i~~i 78 (155)
T 1jl1_A 5 VEIFTAGSALGNPGPGGYGAILRYR--GREKTFSAGYTRTTNNRMELMAAIVALEALK---EHAEVILSTDSQYV-RQGI 78 (155)
T ss_dssp EEEEEEEEESSTTEEEEEEEEEEET--TEEEEEEEEEEEECHHHHHHHHHHHHHHTCC---SCCEEEEEECCHHH-HHHH
T ss_pred EEEEEccccCCCCCceEEEEEEEEC--CeEEEEecCCCCCcHHHHHHHHHHHHHHHhC---cCCcEEEEeCHHHH-HHHH
Confidence 4689999998765333333333322 2222232222 12233344555666665542 13678899996544 3455
Q ss_pred Hh
Q 046583 124 EE 125 (400)
Q Consensus 124 ~~ 125 (400)
..
T Consensus 79 ~~ 80 (155)
T 1jl1_A 79 TQ 80 (155)
T ss_dssp HT
T ss_pred HH
Confidence 44
Done!