Query 046583
Match_columns 400
No_of_seqs 219 out of 1458
Neff 8.9
Searched_HMMs 13730
Date Tue Mar 26 00:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046583.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046583hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1exqa_ c.55.3.2 (A:) Retrovir 75.4 3.9 0.00028 31.1 7.2 66 46-123 5-70 (154)
2 d2bw3a2 c.55.3.12 (A:163-609) 70.8 17 0.0012 31.7 11.6 96 44-144 12-112 (447)
3 d1c6va_ c.55.3.2 (A:) Retrovir 70.3 5.6 0.00041 30.2 7.0 64 45-120 5-68 (159)
4 d1cxqa_ c.55.3.2 (A:) Retrovir 60.0 12 0.00088 27.7 7.0 71 43-120 6-76 (147)
5 d1no1a_ a.179.1.1 (A:) Repliso 33.8 24 0.0017 21.2 3.6 44 118-177 8-51 (67)
6 d1bcoa2 c.55.3.3 (A:258-480) m 19.3 1.3E+02 0.0095 23.1 7.1 71 45-118 7-83 (223)
7 d2ch5a2 c.55.1.5 (A:1-117) N-a 18.4 50 0.0036 23.1 3.7 52 70-122 64-115 (117)
8 d1ob1c2 g.3.11.4 (C:46-96) Mer 17.0 13 0.00095 22.1 -0.1 18 302-319 28-49 (51)
9 d1yb3a1 d.296.1.2 (A:2-167) Hy 16.1 1.1E+02 0.0082 22.3 5.1 46 42-89 38-88 (166)
10 d1u04a2 c.55.3.10 (A:324-770) 11.4 1.1E+02 0.0078 27.2 4.6 28 46-73 231-258 (447)
No 1
>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=75.38 E-value=3.9 Score=31.10 Aligned_cols=66 Identities=18% Similarity=0.109 Sum_probs=44.7
Q ss_pred EEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHHH
Q 046583 46 LITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEAV 123 (400)
Q Consensus 46 vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~Ai 123 (400)
++.+|-|+..++| +.+.+|..-+ ++.++.+ .+++.+.-.-||..+... ..|..|.||+.....++.
T Consensus 5 ~W~~D~~~~~~k~-----ilv~vD~~Sr-~~~~~~~-~~~~~~~v~~~l~~~~~~-----~~p~~I~sDnG~eF~s~~ 70 (154)
T d1exqa_ 5 IWQLDCTHLEGKV-----ILVAVHVASG-YIEAEVI-PAETGQETAYFLLKLAGR-----WPVKTIHTDNGSNFTGAT 70 (154)
T ss_dssp EEEEEEEEETTEE-----EEEEEETTTT-EEEEEEE-SSSSHHHHHHHHHHHHHH-----SCCCEEECCCCGGGTSHH
T ss_pred ceeeEEEEECCEE-----EEEEEECcCC-cEEEEEe-cCcchHHHHhhhhhheec-----cCCCEEEEcCCccccchh
Confidence 8899999987753 4456776644 5666665 455666666666665432 347889999998876443
No 2
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}
Probab=70.78 E-value=17 Score=31.73 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=59.7
Q ss_pred ccEEEeec-eeecCCcCeEEEEEEEecCCCC--eeEeEEEEeecc--chhcHHHHHHHHhhcccccCCCCeEEEccCchh
Q 046583 44 RKLITIDG-WEIDGPYKSVMLVAVCRDGNDA--VLPIAFCEVQEE--NLDSWAFFLTNLTYGLRFERGEGLCILADGDNG 118 (400)
Q Consensus 44 ~~vi~iD~-t~~~~~y~~~ll~a~g~d~~~~--~~~la~a~~~~E--~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~ 118 (400)
+=-|.+|+ |--.++....-+++-=+| +++ ...|||.-++.+ +.++-...+....+..++....-..+++|+...
T Consensus 12 ~~s~~~D~Wts~~~~~~~l~v~~~yi~-~~~~~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~~~~~D~a~n 90 (447)
T d2bw3a2 12 GASATIDLWTDNYIKRNFLGVTLHYHE-NNELRDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGAN 90 (447)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEEEE-TTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHH
T ss_pred CEEEEEEeecCCCCCeEEEEEEEEEEE-CCceeEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEEEEEcCCcHh
Confidence 44578899 443333222112222234 344 466777656543 557766666666566677666778899999887
Q ss_pred HHHHHHhhcCCcchhhcHhhhhhhhh
Q 046583 119 VDEAVEEFLPYAVYRQCCFSLYGRMV 144 (400)
Q Consensus 119 l~~Ai~~vfP~a~h~~C~~Hi~~n~~ 144 (400)
+..+ +++..+..|..|...-+.
T Consensus 91 ~~~~----~~~~~~i~C~aH~Lnl~v 112 (447)
T d2bw3a2 91 VVKS----LANNIRINCSSHLLSNVL 112 (447)
T ss_dssp HHHH----TTTSEEEECHHHHHHHHH
T ss_pred hHHH----hhccccccchhhhhhhhh
Confidence 7655 667888999999776543
No 3
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
Probab=70.33 E-value=5.6 Score=30.23 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=39.5
Q ss_pred cEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHH
Q 046583 45 KLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVD 120 (400)
Q Consensus 45 ~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~ 120 (400)
-++.+|-||+.++| +|+ .+|.. -.++.|+.+ .+++.+.-.-||..+.... ++..|.||+.....
T Consensus 5 g~W~~D~t~~~~k~---il~--~vD~~-Sr~~~~~~~-~~~~a~~v~~~l~~~~~~~-----~~~~I~sDnG~~F~ 68 (159)
T d1c6va_ 5 GTWQMDCTHLEGKI---VIV--AVHVA-SGFIEAEVI-PQETGRQTALFLLKLAGRW-----PITHLHTDNGANFA 68 (159)
T ss_dssp TEEEEEEEEETTEE---EEE--EECTT-SCCEEEEEC-SSCSHHHHHHHHHHHHTTS-----CCCEEECCCCSSTT
T ss_pred CceeeEEEEECCEE---EEE--EEECC-CCeEEEEEe-eccCHHHHHHHHHHHhhcc-----CCceeEecCCCccc
Confidence 36789999987653 444 45654 455677755 4456666566665554322 24468999988753
No 4
>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
Probab=59.99 E-value=12 Score=27.66 Aligned_cols=71 Identities=11% Similarity=-0.102 Sum_probs=41.7
Q ss_pred CccEEEeeceeecCCcCeEEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHH
Q 046583 43 CRKLITIDGWEIDGPYKSVMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVD 120 (400)
Q Consensus 43 ~~~vi~iD~t~~~~~y~~~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~ 120 (400)
...++.+|-|+..... +.-++.+.+|..-+ ++.++. ..+++.+.-...|..+.... ..|..|.||......
T Consensus 6 P~~~w~~D~~~~~~~~-~~~~l~v~vD~~Sr-~i~~~~-~~~~t~~~~~~~l~~~~~~~----g~p~~i~sDnG~~F~ 76 (147)
T d1cxqa_ 6 PLQIWQTDFTLEPRMA-PRSWLAVTVDTASS-AIVVTQ-HGRVTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFT 76 (147)
T ss_dssp CCCEEEEEEEECGGGT-TSCEEEEEEETTTC-CEEEEE-ESSCCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHH
T ss_pred CCCEEEEEEEEecCCC-CeEEEEEEEecccc-eecccc-cCccchHHHHHHHHHHHHHh----CCCeEEEeccccccc
Confidence 4568899988876433 33333455665554 345554 45555555444444443333 357899999987764
No 5
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=33.78 E-value=24 Score=21.19 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=24.3
Q ss_pred hHHHHHHhhcCCcchhhcHhhhhhhhhccCCChhHHHHHHHHhhcccHHHHHHHHHHHHh
Q 046583 118 GVDEAVEEFLPYAVYRQCCFSLYGRMVGKFPDVGVHSAFWGACRSTDRKNFIYHMSIIET 177 (400)
Q Consensus 118 ~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~~~~~~~~~~~~~~a~~~~~f~~~~~~l~~ 177 (400)
.|.+|+.+.+|+ +|...+++..+++-.+...+-+.+++|+.+..
T Consensus 8 qilkavsefypg----------------rfqpddlkgtvkawhrvlaeyeleeimnnltd 51 (67)
T d1no1a_ 8 QILKAVSEFYPG----------------RFQPDDLKGTVKAWHRVLAEYELEEIMNNLTD 51 (67)
T ss_dssp HHHHHHHHHSTT----------------TCCCTTHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC----------------CCCccccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467788888886 34444555544443333334444556666543
No 6
>d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain {Bacteriophage mu [TaxId: 10677]}
Probab=19.33 E-value=1.3e+02 Score=23.15 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=42.4
Q ss_pred cEEEeeceeecCC---cCe---EEEEEEEecCCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchh
Q 046583 45 KLITIDGWEIDGP---YKS---VMLVAVCRDGNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNG 118 (400)
Q Consensus 45 ~vi~iD~t~~~~~---y~~---~ll~a~g~d~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~ 118 (400)
.+|.+||+-+..- ..| -..+.+-+|..-+. ++||.+..+++.++-...|+......+ ...+..+.+|...+
T Consensus 7 ~~v~~D~~~~dv~~~~~dg~~~Rp~l~~~iD~~SR~-Ilg~~i~~~~s~~~v~~~l~~a~~~~~--~p~~~~~~~DnG~~ 83 (223)
T d1bcoa2 7 QWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRK-ILGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDNTRG 83 (223)
T ss_dssp TEEEEEEEECSBCEECTTSCEECCEEEEEEETTTCC-EEEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCCTTS
T ss_pred eeEEcCCcEEEEEEECCCCCCceeEEEEEEECCCCc-EEEEEEeccCCHHHHHHHHHHHHHhhC--CCcccEEeecCCcc
Confidence 5788898888421 112 22344456655544 789999887777776666655543322 23456677886554
No 7
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.37 E-value=50 Score=23.12 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=33.0
Q ss_pred CCCCeeEeEEEEeeccchhcHHHHHHHHhhcccccCCCCeEEEccCchhHHHH
Q 046583 70 GNDAVLPIAFCEVQEENLDSWAFFLTNLTYGLRFERGEGLCILADGDNGVDEA 122 (400)
Q Consensus 70 ~~~~~~~la~a~~~~E~~esw~w~l~~l~~~l~~~~~~~~~iisD~~~~l~~A 122 (400)
....+..+++++..-++.+.-..+.+.|++.++ +....+.|.+|-..++..|
T Consensus 64 ~~~~i~~i~~GlAG~~~~~~~~~l~~~l~~~~~-~~~~~v~v~nDa~~Al~~a 115 (117)
T d2ch5a2 64 PLVPLRSLGLSLSGGDQEDAGRILIEELRDRFP-YLSESYLITTDAAGSIATA 115 (117)
T ss_dssp TTCCBSEEEEEETTTTCHHHHHHHHHHHHHHCT-TSBSCEEEEEHHHHHHHHH
T ss_pred CCccccEEEEEeeccCcchhHHHHHHHHHHHCC-CCCceEEEeccHHHHHhhc
Confidence 334455667777777777777778788877643 1234577778866555443
No 8
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=17.01 E-value=13 Score=22.13 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=14.1
Q ss_pred CCccccCcccc----CCCCchh
Q 046583 302 LMTCSCRLWQL----SGIPCEH 319 (400)
Q Consensus 302 ~~~CsC~~~~~----~GiPC~H 319 (400)
+..|+|.+... .|+-|+|
T Consensus 28 kIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 28 KITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp CCEEEECSTTCCEEGGGTEECC
T ss_pred eEEEEecCCCCCcccceEEeec
Confidence 46799998766 4888887
No 9
>d1yb3a1 d.296.1.2 (A:2-167) Hypothetical protein PF0168 {Pyrococcus furiosus [TaxId: 2261]}
Probab=16.14 E-value=1.1e+02 Score=22.33 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=31.8
Q ss_pred cCccEEEeeceeecCCcCeEEEEE-----EEecCCCCeeEeEEEEeeccchhc
Q 046583 42 RCRKLITIDGWEIDGPYKSVMLVA-----VCRDGNDAVLPIAFCEVQEENLDS 89 (400)
Q Consensus 42 ~~~~vi~iD~t~~~~~y~~~ll~a-----~g~d~~~~~~~la~a~~~~E~~es 89 (400)
.|+-+|.+||-+..-+|--|.+.+ +|.+..+--+.+ |+-..+-.+.
T Consensus 38 vf~aYl~~DgeW~~m~YPhPaf~ikp~gevGatp~~~yFv~--av~kE~lse~ 88 (166)
T d1yb3a1 38 VFNAYLYIDGKWEEMKYPHPAFAVKPGGEVGATPQGFYFVF--AFPKEELSKE 88 (166)
T ss_dssp ECSCEEEETTEEEECCSCEEEEEEETTEEEEEETTEEEEEE--EEEGGGCCHH
T ss_pred hhceEEEEcCEEEeeeCCCCceeeccCcccccCcceeEEEE--EecHHHhhHH
Confidence 477789999999999998887654 677766555554 4444443333
No 10
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
Probab=11.43 E-value=1.1e+02 Score=27.17 Aligned_cols=28 Identities=21% Similarity=0.042 Sum_probs=19.0
Q ss_pred EEEeeceeecCCcCeEEEEEEEecCCCC
Q 046583 46 LITIDGWEIDGPYKSVMLVAVCRDGNDA 73 (400)
Q Consensus 46 vi~iD~t~~~~~y~~~ll~a~g~d~~~~ 73 (400)
+|++|.||-+..-+.....|+.++++|.
T Consensus 231 IIGiDVth~~~~~~~~~g~a~v~~~~g~ 258 (447)
T d1u04a2 231 IIGIDVAPMKRSEGYIGGSAVMFDSQGY 258 (447)
T ss_dssp EEEEEEEEECCTTTCEEEEEEEEETTSC
T ss_pred EEEEeccccCCCCeEEEEEEEEEeCCCc
Confidence 7999999986544445555556666654
Done!