Query 046585
Match_columns 810
No_of_seqs 342 out of 1709
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 13:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-214 2E-219 1853.2 74.9 783 2-810 29-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 3E-151 6E-156 1273.0 44.1 623 2-726 19-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 2.1E-89 4.6E-94 746.7 19.1 297 9-314 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 1E-38 2.2E-43 370.4 15.4 289 3-300 1-332 (673)
5 KOG4729 Galactoside-binding le 99.8 4E-20 8.8E-25 189.8 7.9 91 719-810 35-130 (265)
6 PF02449 Glyco_hydro_42: Beta- 99.8 7.7E-20 1.7E-24 204.9 9.4 142 24-184 2-162 (374)
7 PF02140 Gal_Lectin: Galactose 99.8 3E-20 6.4E-25 163.2 4.6 76 732-809 1-80 (80)
8 PF02836 Glyco_hydro_2_C: Glyc 99.5 9.1E-13 2E-17 143.4 18.4 193 3-236 1-213 (298)
9 PRK10150 beta-D-glucuronidase; 99.4 4.4E-11 9.6E-16 142.4 24.2 158 2-194 277-448 (604)
10 PRK10340 ebgA cryptic beta-D-g 99.2 1.4E-10 3.1E-15 144.6 17.2 257 2-315 319-602 (1021)
11 PRK09525 lacZ beta-D-galactosi 99.2 4.5E-10 9.7E-15 140.1 17.9 148 2-194 335-488 (1027)
12 COG3250 LacZ Beta-galactosidas 99.0 2.5E-09 5.5E-14 129.1 14.8 119 2-162 285-409 (808)
13 PF00150 Cellulase: Cellulase 98.9 1.8E-08 3.9E-13 107.4 14.4 160 13-194 4-171 (281)
14 PF13364 BetaGal_dom4_5: Beta- 98.9 4.3E-09 9.3E-14 98.4 6.9 68 604-700 34-104 (111)
15 PF13364 BetaGal_dom4_5: Beta- 98.6 4.1E-07 9E-12 85.1 10.3 85 441-536 24-110 (111)
16 PF03198 Glyco_hydro_72: Gluca 98.1 3.3E-05 7.1E-10 83.6 14.3 151 3-191 11-179 (314)
17 smart00633 Glyco_10 Glycosyl h 98.0 1.3E-05 2.7E-10 85.7 8.7 116 55-195 3-125 (254)
18 PF02837 Glyco_hydro_2_N: Glyc 98.0 4E-05 8.7E-10 76.1 10.5 99 447-558 63-164 (167)
19 PF13204 DUF4038: Protein of u 97.9 0.00023 4.9E-09 77.7 15.6 225 7-261 2-274 (289)
20 TIGR03356 BGL beta-galactosida 97.7 8.8E-05 1.9E-09 85.1 8.3 96 32-139 54-150 (427)
21 PLN02705 beta-amylase 97.6 0.00019 4.1E-09 82.9 8.8 80 30-115 266-357 (681)
22 PLN02905 beta-amylase 97.5 0.00025 5.5E-09 82.1 9.1 80 30-115 284-375 (702)
23 PLN02801 beta-amylase 97.5 0.00028 6E-09 80.4 9.0 80 30-115 35-126 (517)
24 PLN00197 beta-amylase; Provisi 97.5 0.00033 7.1E-09 80.4 9.2 80 30-115 125-216 (573)
25 PLN02803 beta-amylase 97.4 0.00053 1.1E-08 78.6 9.2 80 30-115 105-196 (548)
26 PLN02161 beta-amylase 97.4 0.00063 1.4E-08 77.6 9.3 81 30-116 115-207 (531)
27 COG3693 XynA Beta-1,4-xylanase 97.1 0.0024 5.2E-08 69.2 9.7 132 42-196 56-194 (345)
28 PF00331 Glyco_hydro_10: Glyco 97.0 0.0012 2.6E-08 73.1 7.0 157 19-196 11-179 (320)
29 PF14488 DUF4434: Domain of un 97.0 0.01 2.3E-07 59.6 12.5 135 27-192 15-158 (166)
30 PF01373 Glyco_hydro_14: Glyco 97.0 0.00096 2.1E-08 74.8 5.4 113 33-157 17-153 (402)
31 PF07745 Glyco_hydro_53: Glyco 96.9 0.0044 9.6E-08 68.7 9.8 143 35-196 27-178 (332)
32 PF00232 Glyco_hydro_1: Glycos 96.6 0.0021 4.5E-08 74.6 4.6 96 32-139 58-155 (455)
33 COG2730 BglC Endoglucanase [Ca 96.4 0.011 2.5E-07 67.5 9.0 118 30-162 66-193 (407)
34 PF02837 Glyco_hydro_2_N: Glyc 96.3 0.0085 1.8E-07 59.4 6.5 65 604-699 67-135 (167)
35 PRK10150 beta-D-glucuronidase; 96.1 0.03 6.4E-07 67.4 11.3 74 449-534 62-137 (604)
36 PRK15014 6-phospho-beta-glucos 96.0 0.019 4E-07 67.1 8.6 96 32-139 69-167 (477)
37 PRK09852 cryptic 6-phospho-bet 96.0 0.0067 1.4E-07 70.6 4.9 96 32-139 71-169 (474)
38 PLN02998 beta-glucosidase 96.0 0.0062 1.3E-07 71.3 4.6 100 32-139 82-183 (497)
39 PLN02814 beta-glucosidase 95.9 0.0066 1.4E-07 71.2 4.3 96 32-139 77-174 (504)
40 TIGR01233 lacG 6-phospho-beta- 95.5 0.037 8.1E-07 64.5 8.5 96 32-139 53-149 (467)
41 KOG2230 Predicted beta-mannosi 95.5 0.17 3.6E-06 58.6 13.1 149 8-196 328-494 (867)
42 COG3867 Arabinogalactan endo-1 95.5 0.077 1.7E-06 57.1 9.9 111 35-162 66-183 (403)
43 PRK09593 arb 6-phospho-beta-gl 95.5 0.019 4.1E-07 67.0 5.8 100 32-139 73-175 (478)
44 PLN02849 beta-glucosidase 95.5 0.014 3E-07 68.5 4.5 100 32-139 79-180 (503)
45 PRK09589 celA 6-phospho-beta-g 95.3 0.021 4.5E-07 66.6 5.3 100 32-139 67-169 (476)
46 PRK10340 ebgA cryptic beta-D-g 95.3 0.067 1.5E-06 68.0 10.1 94 451-560 108-206 (1021)
47 PRK09525 lacZ beta-D-galactosi 95.2 0.099 2.1E-06 66.5 11.4 93 451-559 119-217 (1027)
48 PRK13511 6-phospho-beta-galact 95.2 0.058 1.3E-06 62.9 8.7 96 32-139 54-150 (469)
49 PF14871 GHL6: Hypothetical gl 95.1 0.13 2.8E-06 49.8 9.1 98 36-138 4-123 (132)
50 COG2723 BglB Beta-glucosidase/ 94.1 0.059 1.3E-06 61.9 4.8 96 32-139 59-157 (460)
51 PF02638 DUF187: Glycosyl hydr 92.6 0.39 8.5E-06 53.1 8.3 117 30-157 17-161 (311)
52 PRK09936 hypothetical protein; 91.0 1.8 3.8E-05 47.1 10.7 57 28-90 34-91 (296)
53 TIGR01515 branching_enzym alph 90.9 4.1 8.8E-05 49.4 15.0 57 36-92 160-227 (613)
54 smart00642 Aamy Alpha-amylase 90.8 0.64 1.4E-05 46.7 6.9 66 33-98 20-97 (166)
55 smart00812 Alpha_L_fucos Alpha 89.5 34 0.00073 39.2 20.1 243 28-322 80-337 (384)
56 PRK05402 glycogen branching en 89.2 5.2 0.00011 49.4 14.4 54 38-91 272-335 (726)
57 COG3934 Endo-beta-mannanase [C 88.9 0.3 6.4E-06 55.8 3.0 158 9-184 3-169 (587)
58 TIGR00542 hxl6Piso_put hexulos 88.0 7 0.00015 42.1 12.8 131 31-189 15-149 (279)
59 PF05913 DUF871: Bacterial pro 87.7 0.81 1.8E-05 51.6 5.5 71 20-96 2-72 (357)
60 cd00019 AP2Ec AP endonuclease 87.2 6 0.00013 42.6 11.7 98 32-158 10-108 (279)
61 PRK12568 glycogen branching en 87.2 14 0.0003 45.6 15.8 54 37-93 275-341 (730)
62 PRK13210 putative L-xylulose 5 86.8 7.3 0.00016 41.8 12.1 129 32-189 16-149 (284)
63 PRK09441 cytoplasmic alpha-amy 86.5 1.1 2.3E-05 52.6 5.9 68 24-91 7-101 (479)
64 COG1649 Uncharacterized protei 86.4 2.4 5.3E-05 48.5 8.4 122 30-161 62-210 (418)
65 PRK14706 glycogen branching en 85.7 17 0.00037 44.3 15.6 51 38-91 174-237 (639)
66 PRK01060 endonuclease IV; Prov 84.3 16 0.00034 39.3 13.2 95 34-156 14-110 (281)
67 PF01261 AP_endonuc_2: Xylose 84.2 3.4 7.4E-05 41.5 7.6 124 38-189 1-128 (213)
68 PLN02447 1,4-alpha-glucan-bran 83.8 1.9 4.1E-05 53.0 6.4 61 32-93 251-322 (758)
69 PF14307 Glyco_tran_WbsX: Glyc 83.1 13 0.00028 41.7 12.3 137 28-193 54-195 (345)
70 PRK14705 glycogen branching en 82.6 21 0.00046 46.4 15.1 52 37-91 771-835 (1224)
71 PRK12313 glycogen branching en 81.9 2.7 5.8E-05 51.1 6.7 51 38-91 177-240 (633)
72 PF00128 Alpha-amylase: Alpha 81.8 1.7 3.6E-05 46.6 4.4 57 35-91 7-72 (316)
73 PF01229 Glyco_hydro_39: Glyco 81.3 6.8 0.00015 46.0 9.6 68 22-92 29-105 (486)
74 PF11875 DUF3395: Domain of un 80.5 3.2 7E-05 41.1 5.6 67 743-809 55-133 (151)
75 TIGR02402 trehalose_TreZ malto 80.4 3 6.4E-05 49.8 6.3 53 36-91 115-180 (542)
76 PRK09856 fructoselysine 3-epim 80.2 31 0.00068 36.8 13.6 130 32-189 13-145 (275)
77 TIGR02631 xylA_Arthro xylose i 80.0 30 0.00065 39.5 13.9 91 30-139 30-125 (382)
78 PF13200 DUF4015: Putative gly 78.6 7.2 0.00016 43.3 8.1 111 30-141 11-136 (316)
79 PRK13209 L-xylulose 5-phosphat 78.3 27 0.00058 37.5 12.4 127 31-189 20-154 (283)
80 COG3623 SgaU Putative L-xylulo 77.3 28 0.00061 36.9 11.3 98 30-156 16-115 (287)
81 PF02679 ComA: (2R)-phospho-3- 77.0 4.5 9.7E-05 43.2 5.7 52 31-92 83-134 (244)
82 COG3589 Uncharacterized conser 76.7 5.5 0.00012 44.1 6.3 72 20-98 4-76 (360)
83 TIGR03234 OH-pyruv-isom hydrox 76.3 48 0.001 35.0 13.4 43 33-89 15-57 (254)
84 smart00518 AP2Ec AP endonuclea 76.2 45 0.00098 35.5 13.4 93 34-156 12-105 (273)
85 COG0296 GlgB 1,4-alpha-glucan 76.2 5.1 0.00011 48.3 6.4 53 35-90 168-233 (628)
86 PRK09997 hydroxypyruvate isome 75.7 42 0.00091 35.6 12.9 42 34-89 17-58 (258)
87 TIGR02403 trehalose_treC alpha 75.6 4.2 9.1E-05 48.5 5.6 59 33-91 28-95 (543)
88 PLN02960 alpha-amylase 75.5 5.4 0.00012 49.7 6.5 56 36-91 421-486 (897)
89 PF14587 Glyco_hydr_30_2: O-Gl 74.9 27 0.00059 39.7 11.4 140 42-196 57-227 (384)
90 PRK10785 maltodextrin glucosid 73.0 7.1 0.00015 47.2 6.8 57 35-91 182-246 (598)
91 PRK09505 malS alpha-amylase; R 72.6 7.2 0.00016 47.8 6.6 58 34-91 232-312 (683)
92 PRK09989 hypothetical protein; 71.7 47 0.001 35.3 12.0 43 33-89 16-58 (258)
93 PF03659 Glyco_hydro_71: Glyco 71.3 15 0.00033 41.9 8.6 53 30-91 15-67 (386)
94 PRK10933 trehalose-6-phosphate 71.1 8.3 0.00018 46.1 6.7 55 34-91 35-101 (551)
95 TIGR02104 pulA_typeI pullulana 69.8 8.6 0.00019 46.6 6.5 56 36-91 168-249 (605)
96 TIGR02456 treS_nterm trehalose 69.6 6.6 0.00014 46.8 5.4 58 33-90 29-95 (539)
97 cd06593 GH31_xylosidase_YicI Y 68.8 9.3 0.0002 42.0 6.0 68 29-96 21-91 (308)
98 TIGR00677 fadh2_euk methylenet 66.3 20 0.00043 39.2 7.8 109 18-140 130-251 (281)
99 cd06568 GH20_SpHex_like A subg 66.1 57 0.0012 36.5 11.6 72 7-91 3-95 (329)
100 PF02055 Glyco_hydro_30: O-Gly 66.1 40 0.00087 39.9 10.8 276 15-317 74-425 (496)
101 PLN02361 alpha-amylase 65.8 14 0.00029 42.6 6.7 57 35-91 32-96 (401)
102 PF01791 DeoC: DeoC/LacD famil 65.6 2.5 5.5E-05 44.6 0.7 53 35-90 79-131 (236)
103 PF11324 DUF3126: Protein of u 64.8 12 0.00027 31.5 4.5 20 476-495 25-44 (63)
104 TIGR03849 arch_ComA phosphosul 64.6 13 0.00028 39.6 5.8 51 32-92 71-121 (237)
105 PF13199 Glyco_hydro_66: Glyco 63.7 13 0.00029 44.4 6.3 79 32-110 118-211 (559)
106 cd04908 ACT_Bt0572_1 N-termina 63.5 19 0.00042 29.9 5.6 55 31-89 12-66 (66)
107 TIGR01531 glyc_debranch glycog 62.0 29 0.00062 45.6 9.1 90 30-125 130-234 (1464)
108 PRK14582 pgaB outer membrane N 61.1 36 0.00078 41.7 9.4 111 32-160 334-468 (671)
109 PF06832 BiPBP_C: Penicillin-B 60.4 15 0.00033 32.6 4.7 51 470-537 34-84 (89)
110 TIGR02100 glgX_debranch glycog 59.8 14 0.0003 45.5 5.6 55 37-91 189-265 (688)
111 PRK14510 putative bifunctional 59.3 14 0.00031 48.3 5.9 56 36-91 191-267 (1221)
112 KOG4729 Galactoside-binding le 58.4 13 0.00028 39.8 4.4 84 725-810 140-231 (265)
113 TIGR02401 trehalose_TreY malto 57.1 23 0.0005 44.2 6.9 64 30-93 14-87 (825)
114 cd06589 GH31 The enzymes of gl 56.7 33 0.00072 36.9 7.4 65 30-95 22-90 (265)
115 PF08308 PEGA: PEGA domain; I 56.7 9.7 0.00021 32.2 2.7 23 471-493 3-25 (71)
116 KOG0626 Beta-glucosidase, lact 56.5 21 0.00046 42.0 6.1 113 33-155 92-208 (524)
117 PRK12677 xylose isomerase; Pro 56.3 1E+02 0.0022 35.3 11.5 90 32-139 31-124 (384)
118 PF02449 Glyco_hydro_42: Beta- 56.2 26 0.00057 39.6 6.8 135 171-317 211-373 (374)
119 PRK13398 3-deoxy-7-phosphohept 55.2 43 0.00093 36.4 7.9 76 9-91 20-98 (266)
120 PLN00196 alpha-amylase; Provis 54.8 28 0.00061 40.4 6.8 57 35-91 47-112 (428)
121 PF02065 Melibiase: Melibiase; 54.6 77 0.0017 36.5 10.2 89 25-113 51-148 (394)
122 PRK03705 glycogen debranching 54.0 22 0.00047 43.6 6.0 55 37-91 184-262 (658)
123 PF14683 CBM-like: Polysacchar 53.9 11 0.00024 38.0 2.9 62 629-704 92-153 (167)
124 cd06592 GH31_glucosidase_KIAA1 53.2 34 0.00073 37.7 6.9 68 27-97 25-96 (303)
125 smart00481 POLIIIAc DNA polyme 52.9 40 0.00086 28.0 5.8 45 33-90 16-60 (67)
126 PRK14511 maltooligosyl trehalo 52.3 31 0.00067 43.4 7.0 60 30-93 18-91 (879)
127 PRK14507 putative bifunctional 51.5 30 0.00064 46.6 6.9 60 30-93 756-829 (1693)
128 KOG0496 Beta-galactosidase [Ca 51.4 3.8 8.3E-05 48.9 -0.9 59 733-791 331-389 (649)
129 PF01261 AP_endonuc_2: Xylose 51.1 1.1E+02 0.0023 30.6 9.7 104 32-163 27-137 (213)
130 cd06563 GH20_chitobiase-like T 50.2 76 0.0017 35.8 9.3 60 29-91 15-106 (357)
131 TIGR02103 pullul_strch alpha-1 50.2 30 0.00065 43.8 6.5 21 71-91 404-424 (898)
132 cd06591 GH31_xylosidase_XylS X 49.6 28 0.00061 38.6 5.6 65 30-95 22-90 (319)
133 cd06418 GH25_BacA-like BacA is 49.4 82 0.0018 33.0 8.7 91 30-142 50-141 (212)
134 cd06545 GH18_3CO4_chitinase Th 48.7 87 0.0019 33.3 9.0 96 62-186 36-132 (253)
135 cd06565 GH20_GcnA-like Glycosy 48.4 95 0.0021 34.2 9.4 59 30-91 15-80 (301)
136 TIGR02102 pullulan_Gpos pullul 48.1 30 0.00065 44.8 6.1 21 71-91 555-575 (1111)
137 PRK09267 flavodoxin FldA; Vali 47.9 1.3E+02 0.0028 29.7 9.6 119 12-138 44-167 (169)
138 cd06602 GH31_MGAM_SI_GAA This 47.5 33 0.00072 38.4 5.8 74 24-98 13-93 (339)
139 COG1306 Uncharacterized conser 47.4 35 0.00075 37.5 5.5 59 30-91 75-144 (400)
140 cd06598 GH31_transferase_CtsZ 47.3 35 0.00075 37.9 5.8 67 30-96 22-95 (317)
141 PRK00042 tpiA triosephosphate 47.2 33 0.00071 36.9 5.4 48 38-92 79-127 (250)
142 PRK08673 3-deoxy-7-phosphohept 47.1 50 0.0011 37.1 7.0 76 9-91 86-164 (335)
143 TIGR00419 tim triosephosphate 46.6 39 0.00085 35.3 5.7 44 38-91 74-117 (205)
144 PF10566 Glyco_hydro_97: Glyco 45.7 71 0.0015 34.9 7.7 114 30-151 30-159 (273)
145 COG5309 Exo-beta-1,3-glucanase 45.3 2.1E+02 0.0046 31.3 10.8 119 30-196 61-179 (305)
146 cd06601 GH31_lyase_GLase GLase 45.3 1.1E+02 0.0023 34.4 9.3 72 24-96 13-89 (332)
147 smart00854 PGA_cap Bacterial c 45.1 1.5E+02 0.0033 31.2 10.1 45 35-88 63-107 (239)
148 PRK09875 putative hydrolase; P 44.9 1.1E+02 0.0024 33.6 9.2 63 31-110 33-95 (292)
149 PF12876 Cellulase-like: Sugar 44.8 26 0.00057 31.1 3.6 48 146-193 6-62 (88)
150 cd07381 MPP_CapA CapA and rela 44.8 1.5E+02 0.0032 31.1 10.0 45 35-88 67-111 (239)
151 PRK09432 metF 5,10-methylenete 44.8 57 0.0012 36.0 6.9 87 37-140 168-266 (296)
152 cd06603 GH31_GANC_GANAB_alpha 44.4 38 0.00083 37.9 5.6 74 24-98 13-91 (339)
153 PLN02877 alpha-amylase/limit d 43.2 46 0.001 42.4 6.5 21 71-91 466-486 (970)
154 PRK08645 bifunctional homocyst 43.0 75 0.0016 38.7 8.2 111 13-139 459-578 (612)
155 cd06599 GH31_glycosidase_Aec37 42.3 55 0.0012 36.3 6.4 66 31-96 28-98 (317)
156 cd00311 TIM Triosephosphate is 41.8 57 0.0012 34.9 6.2 49 38-92 77-125 (242)
157 cd06600 GH31_MGAM-like This fa 41.8 44 0.00096 37.0 5.6 73 24-97 13-90 (317)
158 KOG3833 Uncharacterized conser 41.6 26 0.00057 38.5 3.6 54 32-91 443-499 (505)
159 cd06547 GH85_ENGase Endo-beta- 41.0 82 0.0018 35.5 7.6 111 48-193 32-148 (339)
160 PLN03059 beta-galactosidase; P 40.8 52 0.0011 41.2 6.4 40 453-494 620-659 (840)
161 TIGR00676 fadh2 5,10-methylene 39.9 1.1E+02 0.0024 33.1 8.2 109 17-139 125-246 (272)
162 cd06604 GH31_glucosidase_II_Ma 39.1 54 0.0012 36.7 5.8 72 24-96 13-89 (339)
163 cd02742 GH20_hexosaminidase Be 39.0 97 0.0021 34.1 7.7 60 29-91 13-92 (303)
164 cd06570 GH20_chitobiase-like_1 38.8 1.1E+02 0.0023 34.0 8.0 60 29-91 15-88 (311)
165 TIGR00587 nfo apurinic endonuc 38.7 2.1E+02 0.0045 30.9 10.1 83 35-139 14-98 (274)
166 COG2884 FtsE Predicted ATPase 38.3 27 0.00059 36.3 2.9 16 630-645 55-70 (223)
167 cd06562 GH20_HexA_HexB-like Be 38.2 1.6E+02 0.0034 33.2 9.4 74 8-91 4-90 (348)
168 cd06595 GH31_xylosidase_XylS-l 37.9 65 0.0014 35.3 6.1 65 30-94 23-97 (292)
169 PF01055 Glyco_hydro_31: Glyco 37.8 45 0.00099 38.4 5.1 70 30-100 41-112 (441)
170 PTZ00372 endonuclease 4-like p 37.7 4.7E+02 0.01 30.4 13.0 90 35-156 144-239 (413)
171 PF08924 DUF1906: Domain of un 37.5 78 0.0017 30.8 5.9 92 30-141 36-128 (136)
172 PRK09856 fructoselysine 3-epim 37.2 46 0.00099 35.5 4.7 55 33-91 91-149 (275)
173 KOG2024 Beta-Glucuronidase GUS 37.0 43 0.00094 36.2 4.2 43 448-490 84-130 (297)
174 TIGR00433 bioB biotin syntheta 35.7 56 0.0012 35.4 5.2 51 35-88 123-175 (296)
175 PRK12858 tagatose 1,6-diphosph 35.6 46 0.001 37.5 4.5 62 28-91 102-163 (340)
176 PF02228 Gag_p19: Major core p 35.5 16 0.00034 32.1 0.6 38 30-84 20-57 (92)
177 TIGR02455 TreS_stutzeri trehal 35.3 97 0.0021 37.8 7.2 72 37-108 79-175 (688)
178 PRK14565 triosephosphate isome 35.2 66 0.0014 34.4 5.4 49 37-92 77-126 (237)
179 KOG0259 Tyrosine aminotransfer 35.0 51 0.0011 37.5 4.6 61 26-90 177-238 (447)
180 COG0366 AmyA Glycosidases [Car 34.9 71 0.0015 37.0 6.2 56 36-91 33-97 (505)
181 cd06416 GH25_Lys1-like Lys-1 i 34.7 98 0.0021 31.6 6.5 87 22-111 56-157 (196)
182 PF07691 PA14: PA14 domain; I 34.4 1.6E+02 0.0035 27.7 7.6 40 453-495 47-86 (145)
183 PLN02784 alpha-amylase 34.1 89 0.0019 39.3 6.9 57 35-91 524-588 (894)
184 PF08531 Bac_rhamnosid_N: Alph 34.0 85 0.0018 31.6 5.8 60 470-535 6-67 (172)
185 cd08560 GDPD_EcGlpQ_like_1 Gly 33.7 1.1E+02 0.0024 34.6 7.2 53 33-91 246-298 (356)
186 PF14701 hDGE_amylase: glucano 33.3 1.5E+02 0.0031 34.5 8.0 91 30-126 20-127 (423)
187 PRK13209 L-xylulose 5-phosphat 33.2 2.5E+02 0.0055 29.9 9.7 102 30-161 55-161 (283)
188 COG0149 TpiA Triosephosphate i 32.8 92 0.002 33.6 6.0 48 38-92 81-129 (251)
189 PTZ00333 triosephosphate isome 32.8 96 0.0021 33.5 6.2 48 38-92 82-130 (255)
190 PRK05265 pyridoxine 5'-phospha 32.5 62 0.0013 34.6 4.5 48 32-97 113-161 (239)
191 PLN02429 triosephosphate isome 32.5 75 0.0016 35.4 5.4 45 38-92 140-188 (315)
192 cd06564 GH20_DspB_LnbB-like Gl 32.2 1.3E+02 0.0028 33.5 7.4 145 25-189 12-196 (326)
193 cd06597 GH31_transferase_CtsY 31.7 93 0.002 34.9 6.2 73 24-96 13-110 (340)
194 PRK14566 triosephosphate isome 31.6 1E+02 0.0022 33.5 6.1 48 38-92 88-136 (260)
195 COG1523 PulA Type II secretory 31.1 75 0.0016 39.2 5.6 54 38-91 206-285 (697)
196 PRK10966 exonuclease subunit S 30.6 4.1E+02 0.0089 30.7 11.3 86 15-113 40-135 (407)
197 PRK13210 putative L-xylulose 5 30.4 72 0.0016 34.0 4.9 60 32-92 94-154 (284)
198 PRK09997 hydroxypyruvate isome 30.0 69 0.0015 34.0 4.6 60 32-91 85-144 (258)
199 PRK10076 pyruvate formate lyas 29.7 1.6E+02 0.0035 30.8 7.2 127 31-189 53-209 (213)
200 PRK15492 triosephosphate isome 29.3 1.1E+02 0.0025 33.0 6.1 49 38-92 87-135 (260)
201 cd01299 Met_dep_hydrolase_A Me 28.6 1.1E+02 0.0024 33.6 6.1 61 30-91 118-180 (342)
202 COG1663 LpxK Tetraacyldisaccha 27.7 98 0.0021 34.8 5.3 58 12-85 231-288 (336)
203 COG1891 Uncharacterized protei 27.6 21 0.00046 36.2 0.1 65 18-90 117-186 (235)
204 TIGR01698 PUNP purine nucleoti 27.5 86 0.0019 33.5 4.7 40 11-50 47-87 (237)
205 PRK14567 triosephosphate isome 27.5 1.3E+02 0.0028 32.5 6.1 49 38-92 78-126 (253)
206 TIGR03234 OH-pyruv-isom hydrox 27.3 78 0.0017 33.4 4.4 59 32-91 84-143 (254)
207 PF07488 Glyco_hydro_67M: Glyc 27.1 4.6E+02 0.0099 29.3 10.0 135 30-187 55-189 (328)
208 PF02606 LpxK: Tetraacyldisacc 26.9 1.3E+02 0.0029 33.6 6.3 58 11-84 224-281 (326)
209 PLN02561 triosephosphate isome 26.8 1.4E+02 0.003 32.3 6.1 50 37-92 80-129 (253)
210 COG5520 O-Glycosyl hydrolase [ 26.6 3.4E+02 0.0074 30.9 9.1 113 43-185 77-205 (433)
211 PLN02389 biotin synthase 26.4 87 0.0019 35.8 4.8 46 34-87 177-229 (379)
212 cd00537 MTHFR Methylenetetrahy 26.2 2E+02 0.0043 31.0 7.3 92 35-140 150-250 (274)
213 COG0156 BioF 7-keto-8-aminopel 26.1 87 0.0019 35.9 4.7 67 12-90 137-207 (388)
214 cd06569 GH20_Sm-chitobiase-lik 26.1 1.3E+02 0.0027 35.3 6.1 73 6-91 6-117 (445)
215 cd04882 ACT_Bt0572_2 C-termina 26.1 1.1E+02 0.0025 24.4 4.3 54 32-87 11-64 (65)
216 cd02810 DHOD_DHPD_FMN Dihydroo 25.5 1.6E+02 0.0034 31.8 6.5 60 30-93 109-171 (289)
217 PRK06703 flavodoxin; Provision 25.4 2.8E+02 0.0061 26.7 7.7 102 13-139 47-148 (151)
218 KOG1065 Maltase glucoamylase a 25.3 1.2E+02 0.0026 37.8 5.8 63 30-97 309-377 (805)
219 COG1735 Php Predicted metal-de 24.9 2.8E+02 0.006 30.9 7.9 58 36-110 52-109 (316)
220 PF01120 Alpha_L_fucos: Alpha- 24.4 1E+03 0.022 26.6 16.1 232 36-319 95-341 (346)
221 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.7 1.8E+02 0.0038 31.6 6.4 50 29-90 88-137 (275)
222 PRK12331 oxaloacetate decarbox 23.7 1.6E+02 0.0034 34.5 6.3 55 25-91 89-143 (448)
223 PF00728 Glyco_hydro_20: Glyco 23.7 98 0.0021 34.3 4.5 59 30-91 16-93 (351)
224 PRK07094 biotin synthase; Prov 23.6 71 0.0015 35.2 3.4 50 35-87 129-181 (323)
225 cd06415 GH25_Cpl1-like Cpl-1 l 23.4 2.9E+02 0.0063 28.2 7.6 99 13-113 20-157 (196)
226 PF08531 Bac_rhamnosid_N: Alph 23.2 99 0.0021 31.1 4.0 23 623-645 7-29 (172)
227 TIGR00539 hemN_rel putative ox 23.1 1.7E+02 0.0038 32.8 6.4 58 21-86 90-151 (360)
228 PRK09485 mmuM homocysteine met 22.9 7.9E+02 0.017 27.0 11.4 101 32-183 200-303 (304)
229 cd07944 DRE_TIM_HOA_like 4-hyd 22.4 1.5E+02 0.0033 32.0 5.5 65 28-92 16-81 (266)
230 PF08306 Glyco_hydro_98M: Glyc 22.4 93 0.002 34.6 3.8 60 18-88 104-170 (324)
231 PRK14456 ribosomal RNA large s 22.2 3.3E+02 0.0071 31.1 8.3 118 35-192 221-348 (368)
232 PF00121 TIM: Triosephosphate 22.2 78 0.0017 33.9 3.2 48 38-92 77-125 (244)
233 PF13380 CoA_binding_2: CoA bi 22.2 1.6E+02 0.0034 27.7 4.9 44 29-88 63-106 (116)
234 cd00544 CobU Adenosylcobinamid 22.2 5.5E+02 0.012 25.8 9.1 50 127-184 101-150 (169)
235 TIGR03700 mena_SCO4494 putativ 22.1 70 0.0015 36.0 3.0 51 34-87 149-204 (351)
236 TIGR01361 DAHP_synth_Bsub phos 22.1 1.6E+02 0.0035 31.8 5.6 75 10-91 19-96 (260)
237 PF07755 DUF1611: Protein of u 22.0 64 0.0014 35.7 2.5 61 16-91 34-95 (301)
238 PRK08599 coproporphyrinogen II 21.8 1.2E+02 0.0025 34.4 4.7 60 20-86 89-151 (377)
239 cd06594 GH31_glucosidase_YihQ 21.5 2.4E+02 0.0052 31.3 7.0 68 30-97 21-97 (317)
240 COG2876 AroA 3-deoxy-D-arabino 21.3 3E+02 0.0064 30.1 7.1 58 30-91 57-116 (286)
241 PRK04302 triosephosphate isome 21.2 1.7E+02 0.0037 30.6 5.5 60 24-93 62-123 (223)
242 KOG0622 Ornithine decarboxylas 21.2 1.4E+02 0.003 34.4 5.0 62 30-92 191-253 (448)
243 COG2179 Predicted hydrolase of 21.1 1.8E+02 0.0039 29.6 5.2 45 37-90 19-68 (175)
244 cd00019 AP2Ec AP endonuclease 21.1 98 0.0021 33.2 3.8 57 32-92 85-144 (279)
245 KOG1412 Aspartate aminotransfe 21.1 1.9E+02 0.004 32.4 5.7 118 29-196 130-250 (410)
246 PF02811 PHP: PHP domain; Int 21.0 1.8E+02 0.0039 28.1 5.4 46 33-91 17-62 (175)
247 PF07071 DUF1341: Protein of u 20.9 2.1E+02 0.0046 29.9 5.8 42 35-91 138-182 (218)
248 PRK09860 putative alcohol dehy 20.9 2.2E+02 0.0048 32.4 6.7 66 14-92 31-96 (383)
249 TIGR03551 F420_cofH 7,8-dideme 20.9 81 0.0018 35.3 3.2 50 35-87 141-195 (343)
250 cd00003 PNPsynthase Pyridoxine 20.7 1.3E+02 0.0028 32.1 4.4 49 31-97 109-158 (234)
251 PLN03036 glutamine synthetase; 20.6 2.2E+02 0.0049 33.2 6.7 66 33-104 231-308 (432)
252 PLN02231 alanine transaminase 20.5 2.7E+02 0.0059 33.3 7.6 59 28-90 252-310 (534)
253 TIGR00542 hxl6Piso_put hexulos 20.3 1.4E+02 0.0031 31.9 4.9 58 33-91 95-153 (279)
254 TIGR01210 conserved hypothetic 20.2 2E+02 0.0043 31.9 5.9 61 20-88 106-172 (313)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.1e-214 Score=1853.24 Aligned_cols=783 Identities=48% Similarity=0.911 Sum_probs=727.4
Q ss_pred EEEEecCcEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHH
Q 046585 2 KVEYDANAIIIDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQ 81 (810)
Q Consensus 2 ~v~~d~~~f~ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~ 81 (810)
+|+||+++|+|||+|++|+||+|||||++|++|+|||+||||+|||||+||||||+|||+||+|||+|++||++||++|+
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~ 108 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQ 108 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccccc
Q 046585 82 DAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYG 161 (810)
Q Consensus 82 ~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg 161 (810)
|+||+|||||||||||||++||||.||+++|+|++||+||+|+++|++|+++|+++|+++++++++||||||+|||||||
T Consensus 109 e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 109 AAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred HcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHHHHhcCCCcCeEEecCCCCCcccccCCCCcccCcCCCCCCCCCccccccccccccccCCCC
Q 046585 162 NIMEKYGDAGKKYIKWCANMAVAQNISEPWIMCQQSDAPEPMINTCNGFYCDQFTPNNPKSPKMWTENWTGWFKLWGGRD 241 (810)
Q Consensus 162 ~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~p~~P~~~~E~~~GWfd~WG~~~ 241 (810)
++...|+.+|++||+||+++++++|++|||+||++.+.+++++++|||.+|+.|.+.++.+|+||||||+|||++||+++
T Consensus 189 s~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~ 268 (840)
T PLN03059 189 PVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAV 268 (840)
T ss_pred ceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCC
Confidence 98666767899999999999999999999999999888888999999999998988778899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeeeeeeeccCCCCCCCCCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhccc
Q 046585 242 PQRTAEDLAFSVARFFQSGGVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHEAIKQAEKF 321 (810)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApL~E~G~~~t~Ky~~lr~l~~~i~~~~~~ 321 (810)
+.|+++|+++++++||++|+|++||||||||||||||+||++++|||||||||+|+|++++|||.+||++|.+++.+++.
T Consensus 269 ~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~ 348 (840)
T PLN03059 269 PNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPA 348 (840)
T ss_pred CcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999988999999999999999999999999999999999998557999999999999988888
Q ss_pred ccCCccccccccccccCeeeEEeecCccee--eeecCCCCCceeEEcCCCCceeccCceeeecccccceeeccceecccc
Q 046585 322 FTDGIVETKNISTYVNLTQFTVKATGERFC--MLSNGDNTGDYTADLGPDGKFFVPAWSVTFLQGCTEEVYNTAKINTQR 399 (810)
Q Consensus 322 l~~~~p~~~~~~~~~~~~~~~~y~~~~~~~--fl~n~~~~~~~~v~~~~~~~~~lp~~sv~il~~~~~~~~~t~~v~~~~ 399 (810)
|+..+|....+| +.+++.+|+..+ .| |+.|++.+...+|.|+++ +|.||+|||+|||||+.++|+|+++++|+
T Consensus 349 l~~~~p~~~~lg---~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~-~y~lp~~Svsilpd~~~~lfnta~v~~q~ 423 (840)
T PLN03059 349 LVSVDPTVTSLG---SNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNG-QYDLPPWSVSILPDCKTAVFNTARLGAQS 423 (840)
T ss_pred ccCCCCceeccC---CceeEEEccCcc-chhhheeccCCCCceeEEECCc-ccccCccceeecccccceeeecccccccc
Confidence 887777777777 889999998665 57 999999999999999999 99999999999999999999999999997
Q ss_pred ceeeeccCccCccccccccccCCCCcc-cccCCCCcccccchhhhccCCCCCcceEEEEEeecCCCCc-c----ccceeE
Q 046585 400 SVMVNKHSHENEKPAKLAWAWTPEPIQ-DTLDGNGKFKAARLLDQKEASGDGSDYLWYMTRVDTKDMS-L----ENATLR 473 (810)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~w~~~~~~e~-~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~-~----~~~~L~ 473 (810)
+.+++.+. ...+.|+++ .|+ .+...+.+++...++||+++|+|.+||+||+|+|....++ . .+.+|+
T Consensus 424 ~~~~~~~~-----~~~~~w~~~--~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~ 496 (840)
T PLN03059 424 SQMKMNPV-----GSTFSWQSY--NEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLT 496 (840)
T ss_pred ceeecccc-----cccccceee--cccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEE
Confidence 76644322 245699998 888 4444556788889999999999999999999999876543 0 346799
Q ss_pred eCCcceEEEEEECCEEEEEEecccccccccccCCCceeeEEcccccccCCccEEEEEEEccCcccccCCcCCCCCcceee
Q 046585 474 VSTKGHGLHAYVNGQLIGTQFSRQATGQQMVTGDDYSFGFDKAVSSLKKGVNVISLLSVTVGLTNYGAFYDLHPTGLVEG 553 (810)
Q Consensus 474 v~~~~D~a~vfvng~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~~g 553 (810)
|.+++|++||||||+++|++++ ...+..++++.+++ ++.|.|+|+||||||||+|||++|+++.|||+ |
T Consensus 497 v~~~~d~~~vFVNg~~~Gt~~~---------~~~~~~~~~~~~v~-l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~-g 565 (840)
T PLN03059 497 IFSAGHALHVFINGQLAGTVYG---------ELSNPKLTFSQNVK-LTVGINKISLLSVAVGLPNVGLHFETWNAGVL-G 565 (840)
T ss_pred EcccCcEEEEEECCEEEEEEEe---------ecCCcceEEecccc-cCCCceEEEEEEEeCCCCccCccccccccccc-c
Confidence 9999999999999999999987 44555688888888 88999999999999999999999999999999 9
Q ss_pred cEEEcccCCccccCCCCceEEeecCCcccccccCCCCC-CCCCccCCC-CCCCCceEEEEEEECCCCCCceEEEeCCCcc
Q 046585 554 SVLLREKGKDIIDATGYEWSYKVGLNGEAQHFYDPNSK-NVNWSCTDV-PKDRPMTWYKTSFKTPPGKEAVVVDLLGMGK 631 (810)
Q Consensus 554 ~V~l~g~~~~~~~L~~~~W~~~~~l~ge~~~~~~~~~~-~~~w~~~~~-~~~~~~~~yk~~F~~p~~~d~~~Ldl~g~gK 631 (810)
+|+|++.++++++|++|.|.|+++|+||.++|+.++.. .++|...+. +...||+|||++|++|++.|||||||+||||
T Consensus 566 ~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGK 645 (840)
T PLN03059 566 PVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGK 645 (840)
T ss_pred cEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCC
Confidence 99999988888899999999999999999999887533 788976543 4456799999999999999999999999999
Q ss_pred EEEEECCeeceeccccccccCCCCCCCCCcCCcccCCcccCCCCCccceeeecCcccccCCCCcEEEEEEeccCCCCcee
Q 046585 632 GHAWVNGRSIGRYWPTQIAETSGCDPHCNYRGTYKDDKCRTNCGNPSQRWYHVPRSFLNKNADNTLILFEEVGGAPWNVT 711 (810)
Q Consensus 632 G~vwVNG~nlGRYW~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~PqqtlYhvP~~~Lk~~g~N~ivvfE~~g~~p~~i~ 711 (810)
|+|||||+||||||+. .++.++|+.|+|+|.|. ++||+||||||||||||||++||| +|+|+||||||+|++|..|+
T Consensus 646 G~aWVNG~nIGRYW~~-~a~~~gC~~c~y~g~~~-~~kc~~~cggP~q~lYHVPr~~Lk-~g~N~lViFEe~gg~p~~I~ 722 (840)
T PLN03059 646 GQIWINGQSIGRHWPA-YTAHGSCNGCNYAGTFD-DKKCRTNCGEPSQRWYHVPRSWLK-PSGNLLIVFEEWGGNPAGIS 722 (840)
T ss_pred eeEEECCccccccccc-ccccCCCcccccccccc-chhhhccCCCceeEEEeCcHHHhc-cCCceEEEEEecCCCCCceE
Confidence 9999999999999976 35567789999999997 999999999999999999999999 99999999999999999999
Q ss_pred eEeeeeccccccccCCCc-------------------eEEecCCCCeEEEEeeeecCCCCCCCCCCCcCcccCCchHHHH
Q 046585 712 FQVVTVGTVCANAQEGNK-------------------VELRCQGHRKISEIQFASFGDPLGTCGSFSVGNHQADQTVSVV 772 (810)
Q Consensus 712 l~~~~v~~vC~~v~e~~~-------------------~~L~C~~g~~i~~I~~A~yGr~~~~C~~~~~~~C~~~~s~~~v 772 (810)
|+++.++.+|+++.|++. ++|+|+.|++|++|.+|+||||.++|++++.++|++++|+++|
T Consensus 723 ~~~~~~~~~c~~~~e~~p~~~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV 802 (840)
T PLN03059 723 LVKRTTDSVCADIFEGQPALKNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAF 802 (840)
T ss_pred EEEeecCcccccccccCCccccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHH
Confidence 999999999999999983 9999999999988999999999999999999999999999999
Q ss_pred HhhcCCCCCcEEEecCCCcCCCCCCCCceEEEEEEEcC
Q 046585 773 EKLCLGKPSCSIEVSQSTFGHSSLGNLTSRLAVQAVCK 810 (810)
Q Consensus 773 ~~~C~Gk~~C~v~~~~~~Fg~DPC~gt~KyL~v~y~C~ 810 (810)
+++|+||++|+|.|++.+||+|||+||+|||+|+|.|+
T Consensus 803 ~kaC~Gk~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 803 ERNCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred HHHCCCCCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence 99999999999999999997799999999999999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-151 Score=1272.95 Aligned_cols=623 Identities=50% Similarity=0.959 Sum_probs=569.1
Q ss_pred EEEEecCcEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHH
Q 046585 2 KVEYDANAIIIDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQ 81 (810)
Q Consensus 2 ~v~~d~~~f~ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~ 81 (810)
.|+||+++|++||+|++++||+|||+|++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++|+
T Consensus 19 ~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~ 98 (649)
T KOG0496|consen 19 NVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIH 98 (649)
T ss_pred EEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccccc
Q 046585 82 DAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYG 161 (810)
Q Consensus 82 ~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg 161 (810)
+.||+||||+||||||||++||+|.||...|+|.+||+|++|+++|++|+++|++++| +|+++|||||||+|||||||
T Consensus 99 ~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 99 KAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENEYG 176 (649)
T ss_pred HCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeechhh
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHHHHhcCCCcCeEEecCCCCCcccccCCCCccc-CcCC-CCCCCCCccccccccccccccCC
Q 046585 162 NIMEKYGDAGKKYIKWCANMAVAQNISEPWIMCQQSDAPEPMINTCNGFYC-DQFT-PNNPKSPKMWTENWTGWFKLWGG 239 (810)
Q Consensus 162 ~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~-~~~~-~~~p~~P~~~~E~~~GWfd~WG~ 239 (810)
.+...|++.++.|++|-+.++...+.++||+||.+.++++.++++|||++| +.|. +++|++|+||||+|+|||++||+
T Consensus 177 ~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~wGg 256 (649)
T KOG0496|consen 177 NYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHWGG 256 (649)
T ss_pred HHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhhCC
Confidence 877667888999999999999999999999999999999999999999999 8888 89999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCceeeeeeeeccCCCCCCCCCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhc
Q 046585 240 RDPQRTAEDLAFSVARFFQSGGVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHEAIKQAE 319 (810)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApL~E~G~~~t~Ky~~lr~l~~~i~~~~ 319 (810)
+++.|++|+++..+++|+++|+|++||||||||||||++|| ++.+|||||||||+ |..++|||.|+|.+|..++.++
T Consensus 257 ~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~e 333 (649)
T KOG0496|consen 257 PHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCE 333 (649)
T ss_pred CCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhhcC
Confidence 99999999999999999999999999999999999999998 99999999999999 9999999999999999999998
Q ss_pred ccccCCccccccccccccCeeeEEeecCccee--eeecCCCCCceeEEcCCCCceeccCceeeecccccceeeccceecc
Q 046585 320 KFFTDGIVETKNISTYVNLTQFTVKATGERFC--MLSNGDNTGDYTADLGPDGKFFVPAWSVTFLQGCTEEVYNTAKINT 397 (810)
Q Consensus 320 ~~l~~~~p~~~~~~~~~~~~~~~~y~~~~~~~--fl~n~~~~~~~~v~~~~~~~~~lp~~sv~il~~~~~~~~~t~~v~~ 397 (810)
+.+..+++....++ ...+.| |+.|++..+...+.|++. .+.+|+|+++|+|+|++++|+|+++.+
T Consensus 334 p~lv~gd~~~~kyg------------~~~~~C~~Fl~n~~~~~~~~v~f~~~-~y~~~~~slsilpdck~~~~nta~~~~ 400 (649)
T KOG0496|consen 334 PALVAGDITTAKYG------------NLREACAAFLSNNNGAPAAPVPFNKP-KYRLPPWSLSILPDCKTVVYNTAKVMA 400 (649)
T ss_pred ccccccCccccccc------------chhhHHHHHHhcCCCCCCCccccCCC-ccccCceeEEechhhcchhhhcccccc
Confidence 88877776554444 233457 999999999999999988 999999999999999999999998743
Q ss_pred ccceeeeccCccCccccccccccCCCCcccccCCCCcccccchhhhccCCCCCcceEEEEEeecCCCCccccceeEeC-C
Q 046585 398 QRSVMVNKHSHENEKPAKLAWAWTPEPIQDTLDGNGKFKAARLLDQKEASGDGSDYLWYMTRVDTKDMSLENATLRVS-T 476 (810)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~L~v~-~ 476 (810)
+ |... .||++ +|..++ .+||++|+|.++.+.++ ...|+|. +
T Consensus 401 ~-------------------~~~~--~e~~~------------~~~~~~---~~~~ll~~~~~t~d~sd--~t~~~i~ls 442 (649)
T KOG0496|consen 401 Q-------------------WISF--TEPIP------------SEAVGQ---SFGGLLEQTNLTKDKSD--TTSLKIPLS 442 (649)
T ss_pred c-------------------cccc--cCCCc------------cccccC---cceEEEEEEeeccccCC--CceEeeccc
Confidence 2 3333 55543 555544 88899999999876532 3568888 9
Q ss_pred cceEEEEEECCEEEEEEecccccccccccCCCceeeEEcccccccCCccEEEEEEEccCcccccCCcCCCCCcceeecEE
Q 046585 477 KGHGLHAYVNGQLIGTQFSRQATGQQMVTGDDYSFGFDKAVSSLKKGVNVISLLSVTVGLTNYGAFYDLHPTGLVEGSVL 556 (810)
Q Consensus 477 ~~D~a~vfvng~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~~g~V~ 556 (810)
++|++||||||+++|++++ +.....+.+..++. |..|.|+|+|||||+||+||| +++++.|||+ |+|+
T Consensus 443 ~g~~~hVfvNg~~~G~~~g---------~~~~~~~~~~~~~~-l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~-g~v~ 510 (649)
T KOG0496|consen 443 LGHALHVFVNGEFAGSLHG---------NNEKIKLNLSQPVG-LKAGENKLALLSENVGLPNYG-HFENDFKGIL-GPVY 510 (649)
T ss_pred ccceEEEEECCEEeeeEec---------cccceeEEeecccc-cccCcceEEEEEEecCCCCcC-cccccccccc-cceE
Confidence 9999999999999999998 44556688888888 999999999999999999999 8899999999 9999
Q ss_pred EcccCCccccCCCCceEEeecCCcccccccCCCCC-CCCCccCCC-CCCCCceEEEEEEECCCCCCceEEEeCCCccEEE
Q 046585 557 LREKGKDIIDATGYEWSYKVGLNGEAQHFYDPNSK-NVNWSCTDV-PKDRPMTWYKTSFKTPPGKEAVVVDLLGMGKGHA 634 (810)
Q Consensus 557 l~g~~~~~~~L~~~~W~~~~~l~ge~~~~~~~~~~-~~~w~~~~~-~~~~~~~~yk~~F~~p~~~d~~~Ldl~g~gKG~v 634 (810)
|+|. +|+++++|.|+++|.||...+++.+.. .++|..... +..+|.+||+ +|++|++.+||||||.|||||+|
T Consensus 511 l~g~----~~l~~~~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~v 585 (649)
T KOG0496|consen 511 LNGL----IDLTWTKWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQV 585 (649)
T ss_pred Eeee----eccceeecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEE
Confidence 9997 578888999999999999999988765 688886654 3346889999 99999999999999999999999
Q ss_pred EECCeeceeccccccccCCCCCCCCCcCCcccCCcccCCCCCccceeeecCcccccCCCCcEEEEEEeccCCCCceeeEe
Q 046585 635 WVNGRSIGRYWPTQIAETSGCDPHCNYRGTYKDDKCRTNCGNPSQRWYHVPRSFLNKNADNTLILFEEVGGAPWNVTFQV 714 (810)
Q Consensus 635 wVNG~nlGRYW~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~PqqtlYhvP~~~Lk~~g~N~ivvfE~~g~~p~~i~l~~ 714 (810)
||||+||||||+++ | || +.||||++||| ++.|+||||||+|++|..|++++
T Consensus 586 wVNG~niGRYW~~~-------------G--------------~Q-~~yhvPr~~Lk-~~~N~lvvfEee~~~p~~i~~~~ 636 (649)
T KOG0496|consen 586 WVNGQNIGRYWPSF-------------G--------------PQ-RTYHVPRSWLK-PSGNLLVVFEEEGGDPNGISFVT 636 (649)
T ss_pred EECCcccccccCCC-------------C--------------Cc-eEEECcHHHhC-cCCceEEEEEeccCCCccceEEE
Confidence 99999999999875 3 85 55559999999 99999999999999999999999
Q ss_pred eeeccccccccC
Q 046585 715 VTVGTVCANAQE 726 (810)
Q Consensus 715 ~~v~~vC~~v~e 726 (810)
+.+..+|..+.|
T Consensus 637 ~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 637 RPVLSTCAYVRE 648 (649)
T ss_pred eEeeeEeeeccc
Confidence 988888877654
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=2.1e-89 Score=746.71 Aligned_cols=297 Identities=41% Similarity=0.812 Sum_probs=229.5
Q ss_pred cEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE
Q 046585 9 AIIIDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI 88 (810)
Q Consensus 9 ~f~ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi 88 (810)
+|+|||||++|+||||||||+|+++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccC
Q 046585 89 IRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYG 168 (810)
Q Consensus 89 lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 168 (810)
|||||||||||++||+|.||.+++++++|++|+.|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8899999999999999999953
Q ss_pred chhHHHHHHHHHHHHhcCCC-cCeEEecCCC--------CCcccccCCCCcccCc--------CCCCCCCCCcccccccc
Q 046585 169 DAGKKYIKWCANMAVAQNIS-EPWIMCQQSD--------APEPMINTCNGFYCDQ--------FTPNNPKSPKMWTENWT 231 (810)
Q Consensus 169 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~ng~~~~~--------~~~~~p~~P~~~~E~~~ 231 (810)
.++++||+.|++++++.+++ ++.++++... .++..+.+++++.+.+ ....+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999998 5567776532 1222222333344421 12456889999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHcCCceeeeeeeeccCCCCCCCCCCCc----cccCCCCCCCCCCCCCCChhHHH
Q 046585 232 GWFKLWGGRDPQRTAEDLAFSVARFFQSGGVLNNYYMYHGGTNFGRTAGGPYI----ATSYDYNAPLDEYGNLNQPKWGH 307 (810)
Q Consensus 232 GWfd~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~----~TSYDYdApL~E~G~~~t~Ky~~ 307 (810)
|||++||++++.+++++++.++++++++|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ ||||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999955 799999999999999986543 5999999999999998 799999
Q ss_pred HHHHHHH
Q 046585 308 LKQLHEA 314 (810)
Q Consensus 308 lr~l~~~ 314 (810)
||+||++
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-38 Score=370.39 Aligned_cols=289 Identities=22% Similarity=0.338 Sum_probs=217.9
Q ss_pred EEEecCcEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEE-ccccCcCCCcCcceeccCchhHHHHHHHHH
Q 046585 3 VEYDANAIIIDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIET-YIFWDVHEPQRRKYDFSGNLDFVKFFKLVQ 81 (810)
Q Consensus 3 v~~d~~~f~ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~t-yv~Wn~hEp~~G~~df~g~~dl~~fl~la~ 81 (810)
|.+++..|++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.||.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4578899999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCCEEEEecCc-ccccccCCCCCCceeccCCCccc---------ccCChhHHHHHHHHHHHHHHHHHhccccccCCCcE
Q 046585 82 DAGLYAIIRIGP-YVCAEWNYGGFPMWLHNTPGIQL---------RTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPI 151 (810)
Q Consensus 82 ~~gL~Vilr~GP-yicaEw~~GG~P~WL~~~p~~~~---------R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpI 151 (810)
+.||+||||||| ..|.+|..+++|.||..++.-.. ..+++.|++++++.+.+|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 99999999999999987665222 3456778888777444444442 5789999
Q ss_pred EEEcccccccccccccCchhHHHHHHHHHHHHhc-CCCcCeEEec-CCCCC-cccccCCC-----Cccc--CcCCCCCCC
Q 046585 152 ILAQIENEYGNIMEKYGDAGKKYIKWCANMAVAQ-NISEPWIMCQ-QSDAP-EPMINTCN-----GFYC--DQFTPNNPK 221 (810)
Q Consensus 152 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~-~~~~~~~n-----g~~~--~~~~~~~p~ 221 (810)
|+|||+||||++.+.+..|.+.+..||++.+-.. .+..+|=+.- ..+.. ...+.+.+ +... -++..+...
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999854434568889999999988422 2233431110 10000 00011111 1100 123333333
Q ss_pred C----Cccccccccccc-cccCCCCCCCC-HHHHHHHHHHHHHcCCceeeeeeeeccCCCC------CCCCCC---C---
Q 046585 222 S----PKMWTENWTGWF-KLWGGRDPQRT-AEDLAFSVARFFQSGGVLNNYYMYHGGTNFG------RTAGGP---Y--- 283 (810)
Q Consensus 222 ~----P~~~~E~~~GWf-d~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~Ga~---~--- 283 (810)
+ +....|.|-+|| +.|..+.-... .+.-+..+++.|....+ -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 3 777788899999 88887655444 33445566677777766 6999999999999 777754 2
Q ss_pred ----ccccCCCCCCCCCCCCC
Q 046585 284 ----IATSYDYNAPLDEYGNL 300 (810)
Q Consensus 284 ----~~TSYDYdApL~E~G~~ 300 (810)
..|+|++++.+.+.|.+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 57999999999999984
No 5
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.80 E-value=4e-20 Score=189.77 Aligned_cols=91 Identities=22% Similarity=0.369 Sum_probs=81.2
Q ss_pred cccccccCCCceEEecCCCCeEEEEeeeecCCCC-CCCCC--C--CcCcccCCchHHHHHhhcCCCCCcEEEecCCCcCC
Q 046585 719 TVCANAQEGNKVELRCQGHRKISEIQFASFGDPL-GTCGS--F--SVGNHQADQTVSVVEKLCLGKPSCSIEVSQSTFGH 793 (810)
Q Consensus 719 ~vC~~v~e~~~~~L~C~~g~~i~~I~~A~yGr~~-~~C~~--~--~~~~C~~~~s~~~v~~~C~Gk~~C~v~~~~~~Fg~ 793 (810)
.+-..+|||+.++|+||.|.+| +|+.|+|||.+ ..|.. . -..+|..++|+++++++|++|++|.|.|..++||.
T Consensus 35 ~~r~~aCdG~~i~L~CP~~dvI-sv~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~ 113 (265)
T KOG4729|consen 35 SRREYACDGERITLSCPRGDVI-SVQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGD 113 (265)
T ss_pred ceeEEeecCceEEEEcCCCCEE-EEEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCC
Confidence 3445678999999999999987 59999999964 68963 2 24699999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEcC
Q 046585 794 SSLGNLTSRLAVQAVCK 810 (810)
Q Consensus 794 DPC~gt~KyL~v~y~C~ 810 (810)
||||||+|||+|+|.|.
T Consensus 114 DPCPgT~KYLev~Y~Cv 130 (265)
T KOG4729|consen 114 DPCPGTSKYLEVQYGCV 130 (265)
T ss_pred CCCCCchhheEEEeccC
Confidence 99999999999999993
No 6
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.80 E-value=7.7e-20 Score=204.86 Aligned_cols=142 Identities=22% Similarity=0.360 Sum_probs=112.1
Q ss_pred ecCCCCCcccHHHHHHHHHHcCCCEEEE-ccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 046585 24 IHYPRSTPEMWPDLIRKAKEGGVDAIET-YIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYG 102 (810)
Q Consensus 24 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~t-yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~G 102 (810)
+++..++++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 5677899999999999999999999997 56799999999999999 899999999999999999975 67
Q ss_pred CCCceecc-CCCccc----------------ccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccccccccc
Q 046585 103 GFPMWLHN-TPGIQL----------------RTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIME 165 (810)
Q Consensus 103 G~P~WL~~-~p~~~~----------------R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~ 165 (810)
..|.||.+ +|++.. ..++|.|++++++++++|+++++++| .||+|||+||++...
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~- 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHR- 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCc-
Confidence 79999975 677532 24578999999999999999988654 799999999998742
Q ss_pred ccC-chhHHHHHHHHHHHHh
Q 046585 166 KYG-DAGKKYIKWCANMAVA 184 (810)
Q Consensus 166 ~~~-~~~~~y~~~l~~~~~~ 184 (810)
+|+ .+.++|.+||++++..
T Consensus 143 ~~~~~~~~~f~~wLk~kY~t 162 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGT 162 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSS
T ss_pred CCChHHHHHHHHHHHHHhCC
Confidence 344 3678899999999864
No 7
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.80 E-value=3e-20 Score=163.18 Aligned_cols=76 Identities=32% Similarity=0.502 Sum_probs=60.6
Q ss_pred EecCCCCeEEEEeeeecCCCC-CCCCCC---CcCcccCCchHHHHHhhcCCCCCcEEEecCCCcCCCCCCCCceEEEEEE
Q 046585 732 LRCQGHRKISEIQFASFGDPL-GTCGSF---SVGNHQADQTVSVVEKLCLGKPSCSIEVSQSTFGHSSLGNLTSRLAVQA 807 (810)
Q Consensus 732 L~C~~g~~i~~I~~A~yGr~~-~~C~~~---~~~~C~~~~s~~~v~~~C~Gk~~C~v~~~~~~Fg~DPC~gt~KyL~v~y 807 (810)
|+||.|+. +.|.+|+|||+. .+|+.. ..++|+++.++++|+++|+||++|.|.+++.+|| ||||||+|||+|+|
T Consensus 1 L~C~~g~~-I~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKV-ISIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEE-EEEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCE-EEEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 89999965 479999999976 589743 3568999999999999999999999999999997 99999999999999
Q ss_pred Ec
Q 046585 808 VC 809 (810)
Q Consensus 808 ~C 809 (810)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.48 E-value=9.1e-13 Score=143.37 Aligned_cols=193 Identities=17% Similarity=0.267 Sum_probs=126.7
Q ss_pred EEEecCcEEECCEEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHH
Q 046585 3 VEYDANAIIIDGKRKVIIAGSIHYPR------STPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKF 76 (810)
Q Consensus 3 v~~d~~~f~ldG~p~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~f 76 (810)
|.+.++.|+|||||+++.|...|.+. ++++.|+.+|++||+||+|+|++ .++.+.| +|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~----~h~p~~~------------~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT----HHYPPSP------------RF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE----TTS--SH------------HH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc----ccccCcH------------HH
Confidence 67889999999999999999999763 58899999999999999999999 4443444 89
Q ss_pred HHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcc
Q 046585 77 FKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI 156 (810)
Q Consensus 77 l~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 156 (810)
+++|.++||.|+..+.=.-++.|..-| .......|+.+.+.+.+-+++++.+.++|| .||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFG---------NCNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTS---------CTSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCC---------ccccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 999999999999876310112222111 012456789999988888888888877655 8999999
Q ss_pred cccccccccccCchhHHHHHHHHHHHHhcCCCcCeEEecCC--CCCccc-ccCCCCccc-----CcCC----C--CCCCC
Q 046585 157 ENEYGNIMEKYGDAGKKYIKWCANMAVAQNISEPWIMCQQS--DAPEPM-INTCNGFYC-----DQFT----P--NNPKS 222 (810)
Q Consensus 157 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~--~~~~~~-~~~~ng~~~-----~~~~----~--~~p~~ 222 (810)
.||-. ...+++.|.+++++.+.+.|+...... ...+.. .+...+.|. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99993 346889999999999999887543331 011111 111111111 0111 1 35889
Q ss_pred Cccccccccccccc
Q 046585 223 PKMWTENWTGWFKL 236 (810)
Q Consensus 223 P~~~~E~~~GWfd~ 236 (810)
|++.+||....+..
T Consensus 200 P~i~sEyg~~~~~~ 213 (298)
T PF02836_consen 200 PIIISEYGADAYNS 213 (298)
T ss_dssp -EEEEEESEBBSST
T ss_pred CeEehhcccccccc
Confidence 99999997665543
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.38 E-value=4.4e-11 Score=142.39 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=112.9
Q ss_pred EEEEecCcEEECCEEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHH
Q 046585 2 KVEYDANAIIIDGKRKVIIAGSIHYPR------STPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVK 75 (810)
Q Consensus 2 ~v~~d~~~f~ldG~p~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~ 75 (810)
+|++++..|+|||+|+++.|...|... ++++.|+.+|+.||++|+|+|++ .+..+.| +
T Consensus 277 ~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----sh~p~~~------------~ 340 (604)
T PRK10150 277 SVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----SHYPYSE------------E 340 (604)
T ss_pred EEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----ccCCCCH------------H
Confidence 477888999999999999999998652 57788999999999999999999 3333344 8
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCCCCceec-------c-CCCcccccCChhHHHHHHHHHHHHHHHHHhccccccC
Q 046585 76 FFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH-------N-TPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQ 147 (810)
Q Consensus 76 fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~-------~-~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~ 147 (810)
|+++|.|+||+|+.... .-|+..|+. . .+....-..+|.+.++..+-+++++.+.+ |
T Consensus 341 ~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~-------N 405 (604)
T PRK10150 341 MLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK-------N 405 (604)
T ss_pred HHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc-------C
Confidence 99999999999998753 111112221 0 11111112346666666555565655555 5
Q ss_pred CCcEEEEcccccccccccccCchhHHHHHHHHHHHHhcCCCcCeEEe
Q 046585 148 GGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMAVAQNISEPWIMC 194 (810)
Q Consensus 148 gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 194 (810)
+..||||-|.||.... ......+++.|.+.+++.+.+.|+...
T Consensus 406 HPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 406 HPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 5699999999997532 123457889999999999988887544
No 10
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.22 E-value=1.4e-10 Score=144.65 Aligned_cols=257 Identities=14% Similarity=0.161 Sum_probs=153.7
Q ss_pred EEEEecCcEEECCEEeEEEEEEecCCC------CCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHH
Q 046585 2 KVEYDANAIIIDGKRKVIIAGSIHYPR------STPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVK 75 (810)
Q Consensus 2 ~v~~d~~~f~ldG~p~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~ 75 (810)
+|.++++.|+|||+|+++.|...|.+. ++++.|+++|+.||++|+|+|++ .+..+.| +
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------R 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 467788899999999999999998542 47899999999999999999999 4444455 8
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEc
Q 046585 76 FFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQ 155 (810)
Q Consensus 76 fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Q 155 (810)
|+++|.|+||+|+-.. |..|..|...+ +...-+++|.+.++..+=+++++.+.+ |+..||||-
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~~~~~~~mV~Rdr-------NHPSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVYVDRIVRHIHAQK-------NHPSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEE
Confidence 9999999999999876 33222221100 001124677776554444444444444 566999999
Q ss_pred ccccccccccccCchhHHHHHHHHHHHHhcCCCcCeEEecCCCCCcccccCCCCccc-----CcCCCCCCCCCccccccc
Q 046585 156 IENEYGNIMEKYGDAGKKYIKWCANMAVAQNISEPWIMCQQSDAPEPMINTCNGFYC-----DQFTPNNPKSPKMWTENW 230 (810)
Q Consensus 156 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~-----~~~~~~~p~~P~~~~E~~ 230 (810)
+.||-+. + . .++.|.+.+++.+.+.|+. ..+... ..+.+...-.|. ..+....+++|++.+||-
T Consensus 446 lGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~-~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 446 LGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRD-AEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred CccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcC-ccccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 9999863 2 1 2467888899988888763 222111 111222211121 122233467999999984
Q ss_pred cccccccCCCCCCCCHHHHHHHHHH-----------HHHcCC-----ceeeeeeeeccCCCCCCCCCCCccccCCCCCCC
Q 046585 231 TGWFKLWGGRDPQRTAEDLAFSVAR-----------FFQSGG-----VLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPL 294 (810)
Q Consensus 231 ~GWfd~WG~~~~~~~~~~~~~~~~~-----------~l~~g~-----s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApL 294 (810)
.+. |.. ....++.-..+.+ ++..|. .. .-|+.+||- ||-+. . ..++--+.-+
T Consensus 515 ham----gn~--~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G-~~~~~ygGd-~g~~p---~-~~~f~~~Glv 582 (1021)
T PRK10340 515 HAM----GNG--PGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNG-NVWYKYGGD-YGDYP---N-NYNFCIDGLI 582 (1021)
T ss_pred hcc----CCC--CCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCC-CEEEEECCC-CCCCC---C-CcCcccceeE
Confidence 221 110 0012333222221 011000 00 124455553 55321 1 1223334678
Q ss_pred CCCCCCCChhHHHHHHHHHHH
Q 046585 295 DEYGNLNQPKWGHLKQLHEAI 315 (810)
Q Consensus 295 ~E~G~~~t~Ky~~lr~l~~~i 315 (810)
+-+|.+ .|.|.+.|.+.+-+
T Consensus 583 ~~dr~p-~p~~~e~k~~~~pv 602 (1021)
T PRK10340 583 YPDQTP-GPGLKEYKQVIAPV 602 (1021)
T ss_pred CCCCCC-ChhHHHHHHhcceE
Confidence 888986 89999999886543
No 11
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.17 E-value=4.5e-10 Score=140.10 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=108.6
Q ss_pred EEEEecCcEEECCEEeEEEEEEecCC------CCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHH
Q 046585 2 KVEYDANAIIIDGKRKVIIAGSIHYP------RSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVK 75 (810)
Q Consensus 2 ~v~~d~~~f~ldG~p~~~~sG~~Hy~------r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~ 75 (810)
+|+++++.|+|||+|+++.|...|.+ +++++.|+++|+.||++|+|+|++ .++.+.| +
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------L 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 46778889999999999999999844 368899999999999999999999 5555556 8
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEc
Q 046585 76 FFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQ 155 (810)
Q Consensus 76 fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Q 155 (810)
|+++|.|+||+|+-...=..++-+ |. .. -.+||.|.+++.+=+++++.+.+ |+..||||-
T Consensus 399 fydlcDe~GilV~dE~~~e~hg~~-----~~---~~-----~~~dp~~~~~~~~~~~~mV~Rdr-------NHPSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEANIETHGMV-----PM---NR-----LSDDPRWLPAMSERVTRMVQRDR-------NHPSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecCccccCCc-----cc---cC-----CCCCHHHHHHHHHHHHHHHHhCC-------CCCEEEEEe
Confidence 999999999999988531111111 11 00 13578787665544444444444 566999999
Q ss_pred ccccccccccccCchhHHHHHHHHHHHHhcCCCcCeEEe
Q 046585 156 IENEYGNIMEKYGDAGKKYIKWCANMAVAQNISEPWIMC 194 (810)
Q Consensus 156 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 194 (810)
+.||-+. + ...+.|.+.+++.+.+.|+...
T Consensus 459 lgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 459 LGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 9999763 2 1346777888888888887554
No 12
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=2.5e-09 Score=129.13 Aligned_cols=119 Identities=23% Similarity=0.360 Sum_probs=97.3
Q ss_pred EEEEecCcEEECCEEeEEEEEEecCC-----CC-CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHH
Q 046585 2 KVEYDANAIIIDGKRKVIIAGSIHYP-----RS-TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVK 75 (810)
Q Consensus 2 ~v~~d~~~f~ldG~p~~~~sG~~Hy~-----r~-~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~ 75 (810)
+|.+++..|.|||||+++-|..-|.+ |. ..+..+++|++||++|+|+|+| + |-|.. .+
T Consensus 285 ~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~-----------~~ 348 (808)
T COG3250 285 TVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS-----------EE 348 (808)
T ss_pred EEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC-----------HH
Confidence 47888899999999999999999987 33 4555899999999999999999 3 55544 38
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEc
Q 046585 76 FFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQ 155 (810)
Q Consensus 76 fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Q 155 (810)
|++||.++||+||-.+ ..||-. +| +|+.|++.+..=+++++.+.+.|| .||||-
T Consensus 349 ~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiWs 402 (808)
T COG3250 349 FYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIWS 402 (808)
T ss_pred HHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEEe
Confidence 9999999999999886 233322 12 788899888887888877777555 899999
Q ss_pred ccccccc
Q 046585 156 IENEYGN 162 (810)
Q Consensus 156 iENEyg~ 162 (810)
+.||-|.
T Consensus 403 ~gNE~~~ 409 (808)
T COG3250 403 LGNESGH 409 (808)
T ss_pred ccccccC
Confidence 9999874
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.90 E-value=1.8e-08 Score=107.40 Aligned_cols=160 Identities=17% Similarity=0.236 Sum_probs=110.9
Q ss_pred CCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCc-CCCcCcc-eeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 13 DGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDV-HEPQRRK-YDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 13 dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~-hEp~~G~-~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
+|+++.+.+-+.|.... ..-++.+++||++|+|+||+.|.|.. .++.|+. ++=+.-..|+++|+.|+++||+|||-
T Consensus 4 ~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999993221 27789999999999999999999954 4477764 66556679999999999999999987
Q ss_pred cCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccc--cC
Q 046585 91 IGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEK--YG 168 (810)
Q Consensus 91 ~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~--~~ 168 (810)
+- + .|.|...... -...+...+...++++.|+.+++. ..+|++++|=||....... ..
T Consensus 82 ~h----~------~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----N------APGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----E------STTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----c------Cccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 52 1 1667432111 112333445555566667777653 3479999999999763210 00
Q ss_pred ----chhHHHHHHHHHHHHhcCCCcCeEEe
Q 046585 169 ----DAGKKYIKWCANMAVAQNISEPWIMC 194 (810)
Q Consensus 169 ----~~~~~y~~~l~~~~~~~g~~vp~~~~ 194 (810)
..-.++++.+.+.+|+.+.+.+++.-
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 11245777788888888888766543
No 14
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.86 E-value=4.3e-09 Score=98.39 Aligned_cols=68 Identities=25% Similarity=0.630 Sum_probs=48.9
Q ss_pred CCceEEEEEEECCCCCCceE-EEe--CCCccEEEEECCeeceeccccccccCCCCCCCCCcCCcccCCcccCCCCCccce
Q 046585 604 RPMTWYKTSFKTPPGKEAVV-VDL--LGMGKGHAWVNGRSIGRYWPTQIAETSGCDPHCNYRGTYKDDKCRTNCGNPSQR 680 (810)
Q Consensus 604 ~~~~~yk~~F~~p~~~d~~~-Ldl--~g~gKG~vwVNG~nlGRYW~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~Pqqt 680 (810)
.+..|||++|+.......+. |+. +...+.+|||||++|||||+.+ | ||++
T Consensus 34 ~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-------------g--------------~q~t 86 (111)
T PF13364_consen 34 AGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-------------G--------------PQTT 86 (111)
T ss_dssp SCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTT-------------E--------------CCEE
T ss_pred CCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCCC-------------C--------------ccEE
Confidence 46799999996422111233 333 3578999999999999999654 3 9999
Q ss_pred eeecCcccccCCCCcEEEEE
Q 046585 681 WYHVPRSFLNKNADNTLILF 700 (810)
Q Consensus 681 lYhvP~~~Lk~~g~N~ivvf 700 (810)
+. ||+.+|+ .++|.|+|+
T Consensus 87 f~-~p~~il~-~~n~v~~vl 104 (111)
T PF13364_consen 87 FS-VPAGILK-YGNNVLVVL 104 (111)
T ss_dssp EE-E-BTTBT-TCEEEEEEE
T ss_pred EE-eCceeec-CCCEEEEEE
Confidence 88 9999999 665565554
No 15
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.56 E-value=4.1e-07 Score=85.06 Aligned_cols=85 Identities=22% Similarity=0.322 Sum_probs=59.4
Q ss_pred hhhccCCCCCcceEEEEEeecCCCCccccce-eEeC-CcceEEEEEECCEEEEEEecccccccccccCCCceeeEEcccc
Q 046585 441 LDQKEASGDGSDYLWYMTRVDTKDMSLENAT-LRVS-TKGHGLHAYVNGQLIGTQFSRQATGQQMVTGDDYSFGFDKAVS 518 (810)
Q Consensus 441 ~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~-L~v~-~~~D~a~vfvng~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (810)
.+..+..++..|++|||++|...+.+ .... |.+. +.+++++|||||+++|+...+ .....+|.+|..
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~-~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~----------~g~q~tf~~p~~ 92 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQD-TSLTPLNIQGGNAFRASVWVNGWFLGSYWPG----------IGPQTTFSVPAG 92 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEE-EEEE-EEECSSTTEEEEEEETTEEEEEEETT----------TECCEEEEE-BT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcc-eeEEEEeccCCCceEEEEEECCEEeeeecCC----------CCccEEEEeCce
Confidence 45556667799999999999764332 2233 4443 689999999999999998731 112256666754
Q ss_pred cccCCccEEEEEEEccCc
Q 046585 519 SLKKGVNVISLLSVTVGL 536 (810)
Q Consensus 519 ~l~~g~~~L~ILven~Gr 536 (810)
.|+.+.++|.+|+.+||+
T Consensus 93 il~~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 93 ILKYGNNVLVVLWDNMGH 110 (111)
T ss_dssp TBTTCEEEEEEEEE-STT
T ss_pred eecCCCEEEEEEEeCCCC
Confidence 266677899999999995
No 16
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.14 E-value=3.3e-05 Score=83.61 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=87.7
Q ss_pred EEEecCcEE--ECCEEeEEEEEEecCCCC-----------CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccC
Q 046585 3 VEYDANAII--IDGKRKVIIAGSIHYPRS-----------TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSG 69 (810)
Q Consensus 3 v~~d~~~f~--ldG~p~~~~sG~~Hy~r~-----------~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g 69 (810)
|+..++.|. .+|++|+|.|-.+.+--. .++.|++++..||++|+|||++|- ..|..
T Consensus 11 I~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~~------- 79 (314)
T PF03198_consen 11 IEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPSK------- 79 (314)
T ss_dssp EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS-------
T ss_pred EEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCCC-------
Confidence 677788888 799999999988765432 568899999999999999999962 23333
Q ss_pred chhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccccCCh--hHHHHHHHHHHHHHHHHHhccccccC
Q 046585 70 NLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNND--IFKNEMQVFTTKIVNMCKEANLFASQ 147 (810)
Q Consensus 70 ~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~--~y~~~~~~~~~~l~~~~~~~~~~~~~ 147 (810)
|=++++++.++.|||||+-.+. |...+-..+| .|-...-.-+.++++.+++++
T Consensus 80 --nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~----- 134 (314)
T PF03198_consen 80 --NHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD----- 134 (314)
T ss_dssp ----HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T-----
T ss_pred --CHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC-----
Confidence 7789999999999999998652 2222333445 454333333445566667554
Q ss_pred CCcEEEEccccccccccc--ccCchhHHHHHHHHHHHHhcCC-CcCe
Q 046585 148 GGPIILAQIENEYGNIME--KYGDAGKKYIKWCANMAVAQNI-SEPW 191 (810)
Q Consensus 148 gGpII~~QiENEyg~~~~--~~~~~~~~y~~~l~~~~~~~g~-~vp~ 191 (810)
+++++=+.||.-.-.. .-.+.-|+..+-+|+-.++.+. .+|+
T Consensus 135 --N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 --NTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp --TEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred --ceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 8999999999854210 0112446666777777777766 4565
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.04 E-value=1.3e-05 Score=85.72 Aligned_cols=116 Identities=21% Similarity=0.353 Sum_probs=87.4
Q ss_pred cCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHH
Q 046585 55 WDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKI 134 (810)
Q Consensus 55 Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l 134 (810)
|...||+||+|||+ .++++++.|+++||.| |..+.+ |.. ..|.|+...+ .+...+++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 89999999999999 9999999999999998 333222 433 6899987432 345678888888888
Q ss_pred HHHHHhccccccCCCcEEEEccccccccccc------cc-CchhHHHHHHHHHHHHhcCCCcCeEEec
Q 046585 135 VNMCKEANLFASQGGPIILAQIENEYGNIME------KY-GDAGKKYIKWCANMAVAQNISEPWIMCQ 195 (810)
Q Consensus 135 ~~~~~~~~~~~~~gGpII~~QiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 195 (810)
+.+++ |.|..|+|=||.-.... .+ ...+.+|+...-+.+++...++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 46899999999533110 01 1134579999999999998888888765
No 18
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=97.98 E-value=4e-05 Score=76.05 Aligned_cols=99 Identities=23% Similarity=0.226 Sum_probs=69.1
Q ss_pred CCCCcceEEEEEeecCCCCc-cccceeEeCCcceEEEEEECCEEEEEEecccccccccccCCCceeeEEcccccccCCc-
Q 046585 447 SGDGSDYLWYMTRVDTKDMS-LENATLRVSTKGHGLHAYVNGQLIGTQFSRQATGQQMVTGDDYSFGFDKAVSSLKKGV- 524 (810)
Q Consensus 447 t~d~~Gyl~Y~t~i~~~~~~-~~~~~L~v~~~~D~a~vfvng~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~- 524 (810)
.....|+.|||++|..+... -....|.+.++.+.+.|||||+++|.... .. ..+.++++-. ++.|.
T Consensus 63 ~~~~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~---------~~--~~~~~dIt~~-l~~g~~ 130 (167)
T PF02837_consen 63 LWDYSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG---------GY--TPFEFDITDY-LKPGEE 130 (167)
T ss_dssp TSTCCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES---------TT--S-EEEECGGG-SSSEEE
T ss_pred ccccCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC---------Cc--CCeEEeChhh-ccCCCC
Confidence 34578999999999876421 14567889999999999999999999865 11 2356666655 88887
Q ss_pred cEEEEEEEccCcccccCCc-CCCCCcceeecEEEc
Q 046585 525 NVISLLSVTVGLTNYGAFY-DLHPTGLVEGSVLLR 558 (810)
Q Consensus 525 ~~L~ILven~Gr~NyG~~~-~~~~kGI~~g~V~l~ 558 (810)
|+|.|.|.+...-.+-+.+ .....||. ++|.|.
T Consensus 131 N~l~V~v~~~~~~~~~~~~~~~~~~GI~-r~V~L~ 164 (167)
T PF02837_consen 131 NTLAVRVDNWPDGSTIPGFDYFNYAGIW-RPVWLE 164 (167)
T ss_dssp EEEEEEEESSSGGGCGBSSSEEE--EEE-SEEEEE
T ss_pred EEEEEEEeecCCCceeecCcCCccCccc-cEEEEE
Confidence 9999999965543331111 12468999 888873
No 19
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.91 E-value=0.00023 Score=77.69 Aligned_cols=225 Identities=20% Similarity=0.299 Sum_probs=114.3
Q ss_pred cCcEE-ECCEEeEEEEEEecCC---CCCcccHHHHHHHHHHcCCCEEEEccc--cCcC-C-------C----cCcceecc
Q 046585 7 ANAII-IDGKRKVIIAGSIHYP---RSTPEMWPDLIRKAKEGGVDAIETYIF--WDVH-E-------P----QRRKYDFS 68 (810)
Q Consensus 7 ~~~f~-ldG~p~~~~sG~~Hy~---r~~~~~W~~~l~k~ka~G~N~V~tyv~--Wn~h-E-------p----~~G~~df~ 68 (810)
++.|. -||+||+.++ .-.+. |...+.|+.-|+..|+.|||+|++-|+ |.-+ . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45666 6999999998 44443 678899999999999999999999766 4322 1 1 12236766
Q ss_pred Cc-----hhHHHHHHHHHHcCCEEEEec---CcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 046585 69 GN-----LDFVKFFKLVQDAGLYAIIRI---GPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKE 140 (810)
Q Consensus 69 g~-----~dl~~fl~la~~~gL~Vilr~---GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 140 (810)
.. ..|++.|+.|.+.||.+.|-| +||.-+-|-.| | ..| =.+..++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 44 489999999999999975443 24433444333 1 111 136788999999999996
Q ss_pred ccccccCCCcEEEEcccccccccccccCchhHHHHHHHHHHHHhcCCCcCe-EEecCC-CCC-----cccccC--C-CCc
Q 046585 141 ANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMAVAQNISEPW-IMCQQS-DAP-----EPMINT--C-NGF 210 (810)
Q Consensus 141 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~-~~~~~~-~~~-----~~~~~~--~-ng~ 210 (810)
+| +|| |=|.||+. ......++-+.+.+.+++....-+. ++..+. ..+ .+-++. . .|.
T Consensus 145 ~~-------Nvi-W~l~gd~~-----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDYF-----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCccC-----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 54 455 77999991 1235677888888888887553332 332221 110 011111 1 121
Q ss_pred --cc-C-------cCC-CCCCCCCccccc-cccccccccCCCCCCCCHHHHHHHHHHHHHcCC
Q 046585 211 --YC-D-------QFT-PNNPKSPKMWTE-NWTGWFKLWGGRDPQRTAEDLAFSVARFFQSGG 261 (810)
Q Consensus 211 --~~-~-------~~~-~~~p~~P~~~~E-~~~GWfd~WG~~~~~~~~~~~~~~~~~~l~~g~ 261 (810)
+. + .+. ...|.+|.+..| -|.|.-..+.......+++++...+=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 11 1 111 456899999999 355655444444445677887765544444555
No 20
>TIGR03356 BGL beta-galactosidase.
Probab=97.69 E-value=8.8e-05 Score=85.15 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc-CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ-RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 110 (810)
..|+++|++||++|+|++++-|.|+-.+|. +|++|.+|-...+++|+.|.++||.+|+--=. | .+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H-----f---d~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH-----W---DLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc-----C---CccHHHHh
Confidence 568999999999999999999999999999 78999888889999999999999998865421 2 48999976
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 111 TPGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 111 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
..+- .++...++..+|.+.++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhC
Confidence 5443 346777777778788877776
No 21
>PLN02705 beta-amylase
Probab=97.59 E-value=0.00019 Score=82.86 Aligned_cols=80 Identities=21% Similarity=0.435 Sum_probs=63.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCC-cCcceeccCchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEP-QRRKYDFSGNLDFVKFFKLVQDAGLYA--IIRIGPYVCAEWNYG---- 102 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~gL~V--ilr~GPyicaEw~~G---- 102 (810)
.++..+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++ ||.+= -|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFH--qCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFH--EYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEee--ccCC-CCCCccc
Confidence 4566788999999999999999999999998 699999995 667799999999995 56541 2333 112
Q ss_pred -CCCceecc----CCCcc
Q 046585 103 -GFPMWLHN----TPGIQ 115 (810)
Q Consensus 103 -G~P~WL~~----~p~~~ 115 (810)
-||.|+.. +|+|.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 28999875 56664
No 22
>PLN02905 beta-amylase
Probab=97.54 E-value=0.00025 Score=82.06 Aligned_cols=80 Identities=24% Similarity=0.593 Sum_probs=62.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCC-cCcceeccCchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEP-QRRKYDFSGNLDFVKFFKLVQDAGLYA--IIRIGPYVCAEWNYG---- 102 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~gL~V--ilr~GPyicaEw~~G---- 102 (810)
.++..+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++ |+.+= -|+- +-|
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFH--qCGG-NVGD~~~ 357 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFH--ECGG-NVGDDVC 357 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEec--ccCC-CCCCccc
Confidence 3455678999999999999999999999998 799999994 667799999999995 55541 2332 112
Q ss_pred -CCCceecc----CCCcc
Q 046585 103 -GFPMWLHN----TPGIQ 115 (810)
Q Consensus 103 -G~P~WL~~----~p~~~ 115 (810)
-||.|+.. +|+|.
T Consensus 358 IPLP~WV~e~g~~nPDif 375 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIF 375 (702)
T ss_pred ccCCHHHHHhhhcCCCce
Confidence 38999875 56664
No 23
>PLN02801 beta-amylase
Probab=97.52 E-value=0.00028 Score=80.45 Aligned_cols=80 Identities=31% Similarity=0.669 Sum_probs=62.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCC-cCcceeccCchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEP-QRRKYDFSGNLDFVKFFKLVQDAGLYA--IIRIGPYVCAEWNYG---- 102 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~gL~V--ilr~GPyicaEw~~G---- 102 (810)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.++++++++.||++ |+.+= -|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFH--qCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFH--QCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEec--ccCC-CCCCccc
Confidence 5566789999999999999999999999998 699999994 667799999999996 55541 1322 111
Q ss_pred -CCCceecc----CCCcc
Q 046585 103 -GFPMWLHN----TPGIQ 115 (810)
Q Consensus 103 -G~P~WL~~----~p~~~ 115 (810)
-||.|+.+ +|+|.
T Consensus 109 IpLP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIF 126 (517)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999874 56653
No 24
>PLN00197 beta-amylase; Provisional
Probab=97.49 E-value=0.00033 Score=80.41 Aligned_cols=80 Identities=20% Similarity=0.549 Sum_probs=62.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCC-cCcceeccCchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEP-QRRKYDFSGNLDFVKFFKLVQDAGLYA--IIRIGPYVCAEWNYG---- 102 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~gL~V--ilr~GPyicaEw~~G---- 102 (810)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.++++++++.||++ |+.+= -|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFH--qCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFH--QCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEec--ccCC-CCCCccc
Confidence 4556789999999999999999999999998 899999995 667799999999996 55541 2332 112
Q ss_pred -CCCceecc----CCCcc
Q 046585 103 -GFPMWLHN----TPGIQ 115 (810)
Q Consensus 103 -G~P~WL~~----~p~~~ 115 (810)
-||.|+.. +|+|.
T Consensus 199 IpLP~WV~~~g~~dpDif 216 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLA 216 (573)
T ss_pred ccCCHHHHHhhccCCCce
Confidence 28999875 56664
No 25
>PLN02803 beta-amylase
Probab=97.40 E-value=0.00053 Score=78.58 Aligned_cols=80 Identities=23% Similarity=0.573 Sum_probs=61.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCC-cCcceeccCchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEP-QRRKYDFSGNLDFVKFFKLVQDAGLYA--IIRIGPYVCAEWNYG---- 102 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~gL~V--ilr~GPyicaEw~~G---- 102 (810)
.++..+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.++++++++.||++ |+.+= -|+- +-|
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFH--qCGG-NVGD~~~ 178 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFH--QCGG-NVGDSCS 178 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEec--ccCC-CCCCccc
Confidence 3455678999999999999999999999998 599999995 667799999999996 45541 1322 111
Q ss_pred -CCCceecc----CCCcc
Q 046585 103 -GFPMWLHN----TPGIQ 115 (810)
Q Consensus 103 -G~P~WL~~----~p~~~ 115 (810)
-||.|+.+ +|+|.
T Consensus 179 IpLP~WV~e~~~~~pDi~ 196 (548)
T PLN02803 179 IPLPPWVLEEMSKNPDLV 196 (548)
T ss_pred ccCCHHHHHhhhcCCCce
Confidence 28999875 57764
No 26
>PLN02161 beta-amylase
Probab=97.36 E-value=0.00063 Score=77.55 Aligned_cols=81 Identities=20% Similarity=0.466 Sum_probs=62.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCC-cCcceeccCchhHHHHHHHHHHcCCEE--EEecCcccccccCCC----
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEP-QRRKYDFSGNLDFVKFFKLVQDAGLYA--IIRIGPYVCAEWNYG---- 102 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~gL~V--ilr~GPyicaEw~~G---- 102 (810)
.++..+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.++++++++.||++ |+.+ --|+- +-|
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~~~ 188 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCF--HSNMH-LFGGKGG 188 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccC
Confidence 3445678999999999999999999999998 899999994 667799999999996 4554 12222 111
Q ss_pred -CCCceecc----CCCccc
Q 046585 103 -GFPMWLHN----TPGIQL 116 (810)
Q Consensus 103 -G~P~WL~~----~p~~~~ 116 (810)
-||.|+.+ +|+|.+
T Consensus 189 IpLP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYY 207 (531)
T ss_pred ccCCHHHHhhhccCCCceE
Confidence 28999875 577643
No 27
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.0024 Score=69.25 Aligned_cols=132 Identities=17% Similarity=0.307 Sum_probs=96.8
Q ss_pred HHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccccCCh
Q 046585 42 KEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNND 121 (810)
Q Consensus 42 ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~ 121 (810)
|+.+.=|-+.-.=|+..||++|.|+|+ --++..+.|+++||.+ |-=+.| |-+ -.|.|+..+. -+-+
T Consensus 56 re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~~ 121 (345)
T COG3693 56 RECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSKE 121 (345)
T ss_pred hhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cChH
Confidence 333333334455699999999999999 6788999999999965 322222 333 6788987643 2457
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccc----cc---cccCchhHHHHHHHHHHHHhcCCCcCeEEe
Q 046585 122 IFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGN----IM---EKYGDAGKKYIKWCANMAVAQNISEPWIMC 194 (810)
Q Consensus 122 ~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~----~~---~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 194 (810)
..++.+++++..++.+++ |.|+.|-|=||-=. +. +..+-.+.+|+++.-+.+++.+.+--++.+
T Consensus 122 ~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~N 192 (345)
T COG3693 122 ALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIN 192 (345)
T ss_pred HHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEee
Confidence 889999999999999998 35999999999732 21 112135778999999999998887777776
Q ss_pred cC
Q 046585 195 QQ 196 (810)
Q Consensus 195 ~~ 196 (810)
+-
T Consensus 193 DY 194 (345)
T COG3693 193 DY 194 (345)
T ss_pred cc
Confidence 54
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.02 E-value=0.0012 Score=73.11 Aligned_cols=157 Identities=13% Similarity=0.216 Sum_probs=108.3
Q ss_pred EEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEc--cccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccc
Q 046585 19 IIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETY--IFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 19 ~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~ty--v~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyic 96 (810)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688999887765442 4444555669999885 5599999999999999 89999999999999974221 1
Q ss_pred cccCCCCCCceeccCCCcccccC-ChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccccccccc---------c
Q 046585 97 AEWNYGGFPMWLHNTPGIQLRTN-NDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIME---------K 166 (810)
Q Consensus 97 aEw~~GG~P~WL~~~p~~~~R~~-d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 166 (810)
=|.. ..|.|+...+.. ... .+...++++++++.++.+++. -|.|.+|-|=||-=.... -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1433 789999864110 000 124788899999999888772 179999999999733110 0
Q ss_pred cCchhHHHHHHHHHHHHhcCCCcCeEEecC
Q 046585 167 YGDAGKKYIKWCANMAVAQNISEPWIMCQQ 196 (810)
Q Consensus 167 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 196 (810)
+...+.+|+...-+++++...++.+|.++-
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 112346799999999999888888888764
No 29
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.97 E-value=0.01 Score=59.55 Aligned_cols=135 Identities=10% Similarity=0.099 Sum_probs=82.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCEEEEccccCcCC-----Cc---CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccc
Q 046585 27 PRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHE-----PQ---RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAE 98 (810)
Q Consensus 27 ~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hE-----p~---~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaE 98 (810)
..+.++.|+++|+.||++|+++|=+- |...+ |. ++.|.-.....|+.+|++|++.||+|++..+-
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~----- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF----- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC-----
Confidence 47899999999999999999998431 22111 11 22333344568999999999999999988641
Q ss_pred cCCCCCCceeccCCCcccccCChhHH-HHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCchhHHHHHH
Q 046585 99 WNYGGFPMWLHNTPGIQLRTNNDIFK-NEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKW 177 (810)
Q Consensus 99 w~~GG~P~WL~~~p~~~~R~~d~~y~-~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 177 (810)
-|.|-.+ .|+... +.-++..++|..+. ++..++=+|=|-.|..... ....++.+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~y-------g~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRY-------GHHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHH-------cCCCCCceEEEecccCCcc----cchHHHHHH
Confidence 1233321 222221 12222333344333 4455788999999997642 234566677
Q ss_pred HHHHHHhcCCCcCeE
Q 046585 178 CANMAVAQNISEPWI 192 (810)
Q Consensus 178 l~~~~~~~g~~vp~~ 192 (810)
|.+.+++.--+.|++
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 777766653345543
No 30
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.95 E-value=0.00096 Score=74.81 Aligned_cols=113 Identities=21% Similarity=0.415 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcCCCc-CcceeccCchhHHHHHHHHHHcCCEEE--EecCccccc----ccCCCCCC
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVHEPQ-RRKYDFSGNLDFVKFFKLVQDAGLYAI--IRIGPYVCA----EWNYGGFP 105 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~gL~Vi--lr~GPyica----Ew~~GG~P 105 (810)
.-+..|+++|++|+..|.+.|.|.+.|.. |++|||+ --+++.+++++.||++. +.+ --|+ ..-+=-||
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsf--H~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSF--HQCGGNVGDDCNIPLP 91 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE---S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEee--ecCCCCCCCccCCcCC
Confidence 45788999999999999999999999997 9999999 57788999999999964 543 1121 11111379
Q ss_pred ceecc---CCCccc--cc------------CChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccc
Q 046585 106 MWLHN---TPGIQL--RT------------NNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIE 157 (810)
Q Consensus 106 ~WL~~---~p~~~~--R~------------~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiE 157 (810)
.|+.. ..+|.+ |+ .... ++.-+.|++.....++ ++. +-|..+||.
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~vg 153 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQVG 153 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE-
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEec
Confidence 99974 124422 10 0112 4555566666666666 332 578888873
No 31
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.87 E-value=0.0044 Score=68.69 Aligned_cols=143 Identities=20% Similarity=0.281 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCCEEEEccccCcCCCcC-cceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc-CC
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDVHEPQR-RKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHN-TP 112 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~hEp~~-G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~-~p 112 (810)
+|.|+.||+.|+|.||.=| |+ .|.. |..|.+ +..+..+-|+++||.|+|-+- |- .-|.--| .+ .|
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg-----~Q~~P 93 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS-DFWADPG-----KQNKP 93 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS-SS--BTT-----B-B--
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc-CCCCCCC-----CCCCC
Confidence 6899999999999999977 44 4444 444444 555555566789999998864 21 1222211 00 12
Q ss_pred CcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccc-cccCc-hh----HHHHHHHHHHHHhcC
Q 046585 113 GIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIM-EKYGD-AG----KKYIKWCANMAVAQN 186 (810)
Q Consensus 113 ~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~-~~~~~-~~----~~y~~~l~~~~~~~g 186 (810)
.-..-.+-....++|..|...++..|++ +|=.+=||||.||...-. +..+. .+ .+++..-.+.+|+.+
T Consensus 94 ~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 94 AAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 2111124466779999999999999994 455788999999985311 11121 11 234444456677655
Q ss_pred CCcCe-EEecC
Q 046585 187 ISEPW-IMCQQ 196 (810)
Q Consensus 187 ~~vp~-~~~~~ 196 (810)
.++.+ ++.+.
T Consensus 168 p~~kV~lH~~~ 178 (332)
T PF07745_consen 168 PNIKVMLHLAN 178 (332)
T ss_dssp STSEEEEEES-
T ss_pred CCCcEEEEECC
Confidence 55443 45443
No 32
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.56 E-value=0.0021 Score=74.56 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc--CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ--RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
..|+++|+.||++|+|+.++-|-|+-.+|. +|++|-+|...-+++|+.+.++||..|+-- ---.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 468999999999999999999999999999 699999998899999999999999976542 1345899998
Q ss_pred cCCCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 110 NTPGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 110 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
+.-+- .++...+...+|.+.+++++.
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhC
Confidence 64332 346677777777777777777
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.011 Score=67.51 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=72.8
Q ss_pred CcccH-----HHHHHHHHHcCCCEEEEccccCcCCCc----CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccC
Q 046585 30 TPEMW-----PDLIRKAKEGGVDAIETYIFWDVHEPQ----RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWN 100 (810)
Q Consensus 30 ~~~~W-----~~~l~k~ka~G~N~V~tyv~Wn~hEp~----~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~ 100 (810)
....| ++.+..||.+|||+||+++.|..+++. |...+=+--..|+++++.|++.||+|+|-.-=|-+ -.
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~--~~ 143 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG--GN 143 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC--CC
Confidence 55678 899999999999999999994443554 32221121127899999999999999987321100 00
Q ss_pred CCCCCceecc-CCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccc
Q 046585 101 YGGFPMWLHN-TPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGN 162 (810)
Q Consensus 101 ~GG~P~WL~~-~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 162 (810)
.+--..|... .+. ....+++..+.+..|+.+.++ .-.||++|+=||.-.
T Consensus 144 ~~~~~s~~~~~~~~------~~~~~~~~~~~w~~ia~~f~~-------~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYKE------ENENVEATIDIWKFIANRFKN-------YDTVIGFELINEPNG 193 (407)
T ss_pred CCcCcccccccccc------cchhHHHHHHHHHHHHHhccC-------CCceeeeeeecCCcc
Confidence 0111222221 111 233444555555666666652 458999999999963
No 34
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.28 E-value=0.0085 Score=59.39 Aligned_cols=65 Identities=23% Similarity=0.482 Sum_probs=49.7
Q ss_pred CCceEEEEEEECCCC--CCceEEEeCCC-ccEEEEECCeeceeccccccccCCCCCCCCCcCCcccCCcccCCCCCccce
Q 046585 604 RPMTWYKTSFKTPPG--KEAVVVDLLGM-GKGHAWVNGRSIGRYWPTQIAETSGCDPHCNYRGTYKDDKCRTNCGNPSQR 680 (810)
Q Consensus 604 ~~~~~yk~~F~~p~~--~d~~~Ldl~g~-gKG~vwVNG~nlGRYW~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~Pqqt 680 (810)
....|||.+|++|.. ...++|.+.|. ....|||||+-||+-... |. | .
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~----------------~~-----------~--~ 117 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGG----------------YT-----------P--F 117 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEEST----------------TS--------------E
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCC----------------cC-----------C--e
Confidence 467999999999974 34689999987 589999999999997521 21 2 2
Q ss_pred eeecCcccccCCCC-cEEEE
Q 046585 681 WYHVPRSFLNKNAD-NTLIL 699 (810)
Q Consensus 681 lYhvP~~~Lk~~g~-N~ivv 699 (810)
-+-|+. .|+ +|+ |+|.|
T Consensus 118 ~~dIt~-~l~-~g~~N~l~V 135 (167)
T PF02837_consen 118 EFDITD-YLK-PGEENTLAV 135 (167)
T ss_dssp EEECGG-GSS-SEEEEEEEE
T ss_pred EEeChh-hcc-CCCCEEEEE
Confidence 355875 788 787 98887
No 35
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.14 E-value=0.03 Score=67.38 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=55.2
Q ss_pred CCcceEEEEEeecCCCCc-cccceeEeCCcceEEEEEECCEEEEEEecccccccccccCCCceeeEEcccccccCCcc-E
Q 046585 449 DGSDYLWYMTRVDTKDMS-LENATLRVSTKGHGLHAYVNGQLIGTQFSRQATGQQMVTGDDYSFGFDKAVSSLKKGVN-V 526 (810)
Q Consensus 449 d~~Gyl~Y~t~i~~~~~~-~~~~~L~v~~~~D~a~vfvng~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~ 526 (810)
+..|..|||++|.++... -....|.+.++...+.|||||++||...+ .-..+.+++.-. |+.|.+ +
T Consensus 62 ~~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~-----------~~~~f~~DIT~~-l~~G~~n~ 129 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKG-----------GYTPFEADITPY-VYAGKSVR 129 (604)
T ss_pred CCcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcC-----------CccceEEeCchh-ccCCCceE
Confidence 467899999999876421 13577899999999999999999998765 112255666544 677754 9
Q ss_pred EEEEEEcc
Q 046585 527 ISLLSVTV 534 (810)
Q Consensus 527 L~ILven~ 534 (810)
|.|.|.|.
T Consensus 130 L~V~v~n~ 137 (604)
T PRK10150 130 ITVCVNNE 137 (604)
T ss_pred EEEEEecC
Confidence 99999874
No 36
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.04 E-value=0.019 Score=67.08 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc--CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ--RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
..|+++|+.||++|+|+-++-|-|+-..|. +|++|=.|....+++|+.+.++||..|+-.= -=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~--------H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS--------HFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--------CCCCCHHHH
Confidence 468999999999999999999999999997 5677888888999999999999999775531 124899997
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 110 NT-PGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 110 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
.. -+- .++...++..+|.+.++++++
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 63 332 356666777777777777666
No 37
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.03 E-value=0.0067 Score=70.63 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc--CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ--RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
..|+++++.||++|+|+.++-|-|+-.+|. +++++=+|-...+++|+.+.++||..|+-.= -=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~--------H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC--------HFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--------CCCCCHHHH
Confidence 456999999999999999999999999997 5567777888999999999999999765531 224899987
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 110 NT-PGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 110 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
.. -+- .++...++..+|.+.+++++.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 345555555666666655555
No 38
>PLN02998 beta-glucosidase
Probab=96.02 E-value=0.0062 Score=71.28 Aligned_cols=100 Identities=12% Similarity=0.179 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc-CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ-RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 110 (810)
..|+++|+.||+||+|+-++-|-|+-.+|. .|.+|=+|..--+++|+.+.++||..++--= =|+ +|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~d---lP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HFD---LPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH
Confidence 467999999999999999999999999996 6778888999999999999999998664421 144 7999976
Q ss_pred C-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 111 T-PGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 111 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
. -+-.=|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4421122223444444444444444444
No 39
>PLN02814 beta-glucosidase
Probab=95.93 E-value=0.0066 Score=71.18 Aligned_cols=96 Identities=16% Similarity=0.267 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc-CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ-RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 110 (810)
..|+++++.||++|+|+-++-|-|+-.+|. +|.+|-+|..--+++|+.+.++||..++-.= =|+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HYD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH
Confidence 467999999999999999999999999996 6788888999999999999999998664421 254 7999976
Q ss_pred C-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 111 T-PGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 111 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
. -+- .++...++..+|.+.+++++.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 3 442 244444445555555555544
No 40
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.55 E-value=0.037 Score=64.45 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc-CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ-RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 110 (810)
..|+++++.||++|+|+-++-|-|+-.+|. +|.+|=+|..--+++|+.+.++||..++--= =|+ +|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~d---lP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HFD---TPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CCC---CcHHHHH
Confidence 467999999999999999999999999996 5777778888999999999999999765531 143 8999976
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 111 TPGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 111 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
.-+- .++...++..+|.+.+++++.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 345555555555555555554
No 41
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.17 Score=58.59 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=100.5
Q ss_pred CcEEECCEEeEEEEEEecCC-----CCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHH
Q 046585 8 NAIIIDGKRKVIIAGSIHYP-----RSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQD 82 (810)
Q Consensus 8 ~~f~ldG~p~~~~sG~~Hy~-----r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~ 82 (810)
-.|.|+|.|.++.++..-+. |..-+.-+-.|+-++++|+|++++ |. -|.| .-+.|.++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGvY------Esd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGVY------ESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Cccc------cchhHHHHhhh
Confidence 46889999999999886543 445566677899999999999998 43 2344 44599999999
Q ss_pred cCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccc
Q 046585 83 AGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGN 162 (810)
Q Consensus 83 ~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 162 (810)
.||.|---. =+.||-. ..|..|+..|++=++.=+.+|+.|| .||.+-=.||=-.
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccHH
Confidence 999874221 1234433 2578899999888888778888665 7888876666311
Q ss_pred --cccccC-------chhHH----HHHHHHHHHHhcCCCcCeEEecC
Q 046585 163 --IMEKYG-------DAGKK----YIKWCANMAVAQNISEPWIMCQQ 196 (810)
Q Consensus 163 --~~~~~~-------~~~~~----y~~~l~~~~~~~g~~vp~~~~~~ 196 (810)
.+.-|+ ..-++ |.+-++++.....-..|++++..
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 000121 01222 44446666666677889888653
No 42
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.077 Score=57.06 Aligned_cols=111 Identities=19% Similarity=0.310 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHH---HcCCEEEEecCcccccccCCCCCCceec--
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQ---DAGLYAIIRIGPYVCAEWNYGGFPMWLH-- 109 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~---~~gL~Vilr~GPyicaEw~~GG~P~WL~-- 109 (810)
+|.|+-+|+.|+|-|+.=| ||.---..|.=-=.|+.|+...+++|+ ..||+|++-+= | + -.|-.
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y--S-------DfwaDPa 134 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y--S-------DFWADPA 134 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c--h-------hhccChh
Confidence 6899999999999999844 666544445444457889999998865 57999999862 1 0 11211
Q ss_pred --cCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccc
Q 046585 110 --NTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGN 162 (810)
Q Consensus 110 --~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 162 (810)
+.|....-.+-..-.+++-.|.+..+..++++ |=-+=||||.||-.+
T Consensus 135 kQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~ 183 (403)
T COG3867 135 KQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNG 183 (403)
T ss_pred hcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCC
Confidence 12221122334556678888888888888854 445679999999843
No 43
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.49 E-value=0.019 Score=67.03 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc--CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ--RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
..|+++|+.||++|+|+-++-|-|+-.+|. +|++|=.|..--+++|+.+.++||..++-.= =|+ +|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~d---lP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HFD---CPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CCHHHH
Confidence 568999999999999999999999999997 6667878888999999999999998654420 143 899997
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 110 NT-PGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 110 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
+. -+-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 53 4431122223455555555555555554
No 44
>PLN02849 beta-glucosidase
Probab=95.45 E-value=0.014 Score=68.51 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=71.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcC-cceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQR-RKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~-G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 110 (810)
..|+++|+.||++|+|+-++-|-|+-.+|.. |.+|=+|...-+++|+.+.++||.-++--= =|+ +|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~d---lP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HYD---HPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CCC---CcHHHHH
Confidence 4579999999999999999999999999963 778888888999999999999998664421 243 8999976
Q ss_pred C-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 111 T-PGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 111 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
. -+-.=|..=..|.++++.-++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4421111223344444444444444444
No 45
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.29 E-value=0.021 Score=66.65 Aligned_cols=100 Identities=20% Similarity=0.257 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc--CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ--RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
..|+++|+.||++|+|+-++-|-|+-.+|. +|+++=.|...-+++|+.+.++||.-++-.= =|+ +|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~d---lP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HFE---MPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CCC---CCHHHH
Confidence 458999999999999999999999999997 5667878888999999999999998664431 143 899997
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 110 NT-PGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 110 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
.. -+-.=|..=..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 53 4431122223455555555555555554
No 46
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.27 E-value=0.067 Score=68.02 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=65.9
Q ss_pred cceEEEEEeecCCCCc-cccceeEeCCcceEEEEEECCEEEEEEecccccccccccCCCceeeEEcccccccCCccEEEE
Q 046585 451 SDYLWYMTRVDTKDMS-LENATLRVSTKGHGLHAYVNGQLIGTQFSRQATGQQMVTGDDYSFGFDKAVSSLKKGVNVISL 529 (810)
Q Consensus 451 ~Gyl~Y~t~i~~~~~~-~~~~~L~v~~~~D~a~vfvng~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~L~I 529 (810)
.+-.|||++|.++..- -....|.+.++...+.|||||++||...+ +-..+.|++.-. ++.|.|+|.|
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g-----------~~~pfefDIT~~-l~~G~N~LaV 175 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKG-----------SRLTAEFDISAM-VKTGDNLLCV 175 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccccC-----------CCccEEEEcchh-hCCCccEEEE
Confidence 3567999999876421 13467899999999999999999998754 112256666544 7788899999
Q ss_pred EEEccCcccccCCcCC----CCCcceeecEEEccc
Q 046585 530 LSVTVGLTNYGAFYDL----HPTGLVEGSVLLREK 560 (810)
Q Consensus 530 Lven~Gr~NyG~~~~~----~~kGI~~g~V~l~g~ 560 (810)
.|.+... |..+++ ...||. .+|.|--.
T Consensus 176 ~V~~~~d---~s~le~qd~w~~sGI~-R~V~L~~~ 206 (1021)
T PRK10340 176 RVMQWAD---STYLEDQDMWWLAGIF-RDVYLVGK 206 (1021)
T ss_pred EEEecCC---CCccccCCcccccccc-ceEEEEEe
Confidence 9975332 222221 247999 88998543
No 47
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.23 E-value=0.099 Score=66.53 Aligned_cols=93 Identities=16% Similarity=0.263 Sum_probs=64.5
Q ss_pred cceEEEEEeecCCCCcc-c-cceeEeCCcceEEEEEECCEEEEEEecccccccccccCCCceeeEEcccccccCCccEEE
Q 046585 451 SDYLWYMTRVDTKDMSL-E-NATLRVSTKGHGLHAYVNGQLIGTQFSRQATGQQMVTGDDYSFGFDKAVSSLKKGVNVIS 528 (810)
Q Consensus 451 ~Gyl~Y~t~i~~~~~~~-~-~~~L~v~~~~D~a~vfvng~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~L~ 528 (810)
.+-.|||++|.++.+-. . ...|.+.++.-.+.|||||+++|...+ +-..+.|++.-. ++.|.|+|.
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g-----------~~~pfefDIT~~-l~~G~N~L~ 186 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQD-----------SRLPAEFDLSPF-LRAGENRLA 186 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecC-----------CCceEEEEChhh-hcCCccEEE
Confidence 46789999998764211 2 467899999999999999999998754 112255666544 778899999
Q ss_pred EEEEccCcccccCCcCC----CCCcceeecEEEcc
Q 046585 529 LLSVTVGLTNYGAFYDL----HPTGLVEGSVLLRE 559 (810)
Q Consensus 529 ILven~Gr~NyG~~~~~----~~kGI~~g~V~l~g 559 (810)
|.|..-- -|..+++ ...||. .+|.|--
T Consensus 187 V~V~~~s---dgs~~e~qd~w~~sGI~-R~V~L~~ 217 (1027)
T PRK09525 187 VMVLRWS---DGSYLEDQDMWRMSGIF-RDVSLLH 217 (1027)
T ss_pred EEEEecC---CCCccccCCceeecccc-ceEEEEE
Confidence 9884321 1222221 246999 8899843
No 48
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.22 E-value=0.058 Score=62.92 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCc-CcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQ-RRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 110 (810)
..|+++++.||++|+|+-++-|.|+-.+|. .|.+|-.|...-+++|+.+.++||.-++-.= =| .+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHH
Confidence 457999999999999999999999999997 5778888989999999999999998654421 13 38999986
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 111 TPGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 111 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
.-+- .++...++..+|.+.+++++.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5332 344444555555555544443
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.06 E-value=0.13 Score=49.83 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCCEEEEccc----cC-----cCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCc
Q 046585 36 DLIRKAKEGGVDAIETYIF----WD-----VHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPM 106 (810)
Q Consensus 36 ~~l~k~ka~G~N~V~tyv~----Wn-----~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~ 106 (810)
+-++.+|++|+|+|.++.- |. .|.+.|+- +..-|.+++++|++.||.|+.|...- -.|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998542 33 34455543 12366899999999999999998655 44444556799
Q ss_pred eeccCCCcc-------------cccCChhHHHHHHHHHHHHHHHH
Q 046585 107 WLHNTPGIQ-------------LRTNNDIFKNEMQVFTTKIVNMC 138 (810)
Q Consensus 107 WL~~~p~~~-------------~R~~d~~y~~~~~~~~~~l~~~~ 138 (810)
|+..+++-+ .-+.+.+|++.+.+-+++|+.++
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 997644311 11234578876666666555543
No 50
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.06 E-value=0.059 Score=61.88 Aligned_cols=96 Identities=19% Similarity=0.358 Sum_probs=70.7
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCcc--eeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRK--YDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~--~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
..++++++.||+||+|+.++-|-|+-.-|..+. .+=.|-.--+++++.|.++||.-++-.= =|+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHh
Confidence 356899999999999999999999999997654 7777888999999999999999765531 244 799998
Q ss_pred cC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 110 NT-PGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 110 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
+. -+=. +..-.++..+|.+.+++++.
T Consensus 131 ~~ygGW~----nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGWE----NRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCcc----CHHHHHHHHHHHHHHHHHhc
Confidence 74 3432 23333444444444554444
No 51
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.60 E-value=0.39 Score=53.11 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=69.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccc-------------cCcCCC-cCcc-eeccCchhHHHHHHHHHHcCCEEEEecCcc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIF-------------WDVHEP-QRRK-YDFSGNLDFVKFFKLVQDAGLYAIIRIGPY 94 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~-------------Wn~hEp-~~G~-~df~g~~dl~~fl~la~~~gL~Vilr~GPy 94 (810)
.++.-++.|++++++|||+|=.-|. |+---+ .+|. -.|+ -|+.+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 5677789999999999999965443 332111 1121 0133 79999999999999998665 11
Q ss_pred cccccCC----CCCCceec-cCCCccccc----CCh----hHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccc
Q 046585 95 VCAEWNY----GGFPMWLH-NTPGIQLRT----NND----IFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIE 157 (810)
Q Consensus 95 icaEw~~----GG~P~WL~-~~p~~~~R~----~d~----~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiE 157 (810)
-...... -..|.|+. +.++..... .+. +-..+|++|+..++..|.+ .+ +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEec
Confidence 1110011 12478876 355532222 122 2337788888776665542 22 36677876
No 52
>PRK09936 hypothetical protein; Provisional
Probab=90.98 E-value=1.8 Score=47.13 Aligned_cols=57 Identities=25% Similarity=0.400 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCc-hhHHHHHHHHHHcCCEEEEe
Q 046585 28 RSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGN-LDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 28 r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~-~dl~~fl~la~~~gL~Vilr 90 (810)
+++++.|+++++.+|+.||+|+= |-|.-- |.=||.+. -+|.+.++.|++.||.|++.
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEc
Confidence 57999999999999999999974 456544 11188765 49999999999999999876
No 53
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=90.85 E-value=4.1 Score=49.39 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=40.2
Q ss_pred HHH-HHHHHcCCCEEEE-ccccCcCCC----cCc-----ceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 36 DLI-RKAKEGGVDAIET-YIFWDVHEP----QRR-----KYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 36 ~~l-~k~ka~G~N~V~t-yv~Wn~hEp----~~G-----~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
++| .-+|++|+|+|.. +|+.+-... .+- .-.|.+..+|.+|++.|++.||.|||-.=
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 343 6779999999998 776532111 110 11355667999999999999999998743
No 54
>smart00642 Aamy Alpha-amylase domain.
Probab=90.81 E-value=0.64 Score=46.69 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcC-------CCcCcce-----eccCchhHHHHHHHHHHcCCEEEEecCcccccc
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVH-------EPQRRKY-----DFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAE 98 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~h-------Ep~~G~~-----df~g~~dl~~fl~la~~~gL~Vilr~GPyicaE 98 (810)
-+.+.|..+|++|+|+|.+-=++... .-.+..| .|....+|.++++.|+++||.||+-.=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 34566777999999999974322211 1122222 456668999999999999999998865443333
No 55
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=89.55 E-value=34 Score=39.17 Aligned_cols=243 Identities=13% Similarity=0.111 Sum_probs=123.9
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEE-------ccccCcCCCcCcceecc-CchhHHHHHHHHHHcCCEEEEecCccccccc
Q 046585 28 RSTPEMWPDLIRKAKEGGVDAIET-------YIFWDVHEPQRRKYDFS-GNLDFVKFFKLVQDAGLYAIIRIGPYVCAEW 99 (810)
Q Consensus 28 r~~~~~W~~~l~k~ka~G~N~V~t-------yv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~gL~Vilr~GPyicaEw 99 (810)
+.+++.| ++.+|++|+.-|-. +-.|.-.-..-..-+-. +..-|.+|.+.|+++||++-+=-.+ -+|
T Consensus 80 ~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~DW 153 (384)
T smart00812 80 KFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FDW 153 (384)
T ss_pred hCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HHh
Confidence 3455555 55678888885542 11244332211111111 2235667889999999977663322 266
Q ss_pred CCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCchhHHHHHHHH
Q 046585 100 NYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCA 179 (810)
Q Consensus 100 ~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~ 179 (810)
.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|+|- +-..+.. ...--++.|.
T Consensus 154 ~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~~~l~ 216 (384)
T smart00812 154 FN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRSKEFL 216 (384)
T ss_pred CC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcHHHHH
Confidence 53 4443211111223456788888888888888888743 3445552 2211110 1111245677
Q ss_pred HHHHhcCCCc-CeEEecCCCCCcccccCCCCccc---CcCCCC-CCCCCccc-cccccccccccCC-CCCCCCHHHHHHH
Q 046585 180 NMAVAQNISE-PWIMCQQSDAPEPMINTCNGFYC---DQFTPN-NPKSPKMW-TENWTGWFKLWGG-RDPQRTAEDLAFS 252 (810)
Q Consensus 180 ~~~~~~g~~v-p~~~~~~~~~~~~~~~~~ng~~~---~~~~~~-~p~~P~~~-~E~~~GWfd~WG~-~~~~~~~~~~~~~ 252 (810)
++++++..+. -++.++... ..... .|.+. +...+. ....|--. +=.-.+|+=+-++ .....+++++...
T Consensus 217 ~~~~~~qP~~~~vvvn~R~~---~~~~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~ 292 (384)
T smart00812 217 AWLYNLSPVKDTVVVNDRWG---GTGCK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRD 292 (384)
T ss_pred HHHHHhCCCCceEEEEcccc---ccCCC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHH
Confidence 7777765543 112222210 00000 01111 111110 00111100 0011244444443 2336789999999
Q ss_pred HHHHHHcCCceeeeeeeeccCCCCCCCCCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhcccc
Q 046585 253 VARFFQSGGVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHEAIKQAEKFF 322 (810)
Q Consensus 253 ~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApL~E~G~~~t~Ky~~lr~l~~~i~~~~~~l 322 (810)
+.+..++|++++ +| -+-+.+|.+....-..|+++...++...+..
T Consensus 293 l~~~Vsk~GnlL-------------LN------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaI 337 (384)
T smart00812 293 LVDIVSKGGNLL-------------LN------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAI 337 (384)
T ss_pred HhhhcCCCceEE-------------Ec------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCcee
Confidence 999999988752 22 2334678887777788999999998755443
No 56
>PRK05402 glycogen branching enzyme; Provisional
Probab=89.25 E-value=5.2 Score=49.44 Aligned_cols=54 Identities=28% Similarity=0.266 Sum_probs=37.7
Q ss_pred HHHHHHcCCCEEEE-ccccC----cCCCcCcce-----eccCchhHHHHHHHHHHcCCEEEEec
Q 046585 38 IRKAKEGGVDAIET-YIFWD----VHEPQRRKY-----DFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 38 l~k~ka~G~N~V~t-yv~Wn----~hEp~~G~~-----df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
|.-+|++|+|+|.. +|+=. .|--.+..| .|.+..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999997 55410 111111111 35667899999999999999999874
No 57
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=88.89 E-value=0.3 Score=55.85 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=105.6
Q ss_pred cEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcC-CC---cCcceec-cCchhHHHHHHHHHHc
Q 046585 9 AIIIDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVH-EP---QRRKYDF-SGNLDFVKFFKLVQDA 83 (810)
Q Consensus 9 ~f~ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~h-Ep---~~G~~df-~g~~dl~~fl~la~~~ 83 (810)
.|.|+++++..++..--+.++..++-+++|+-|+-+|++++++. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47788888777777666667776677889999999999999994 444 65 2333222 2345788999999999
Q ss_pred CCEEEEecCcccccccCCCCCC---ceec-cCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccc
Q 046585 84 GLYAIIRIGPYVCAEWNYGGFP---MWLH-NTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENE 159 (810)
Q Consensus 84 gL~Vilr~GPyicaEw~~GG~P---~WL~-~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE 159 (810)
+|+|+++. |.+==.+||.= .|-. +.|+-. -.|+.++..-++|...|++-++. ...|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~--iyD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNV--IYDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCcccc--ccchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC
Confidence 99998773 33323456642 2332 123311 12566777777888877775554 347889999999
Q ss_pred ccccccccCchhHHHHHHHHHHHHh
Q 046585 160 YGNIMEKYGDAGKKYIKWCANMAVA 184 (810)
Q Consensus 160 yg~~~~~~~~~~~~y~~~l~~~~~~ 184 (810)
.... -...+..+++|+++|+--
T Consensus 148 --~lv~-~p~s~N~f~~w~~emy~y 169 (587)
T COG3934 148 --PLVE-APISVNNFWDWSGEMYAY 169 (587)
T ss_pred --cccc-ccCChhHHHHHHHHHHHH
Confidence 2211 123567899999999643
No 58
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=87.95 E-value=7 Score=42.08 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=77.7
Q ss_pred cccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCceec
Q 046585 31 PEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI-IRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 31 ~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~ 109 (810)
..-|++.|+.++++|++.|++-+ +..| ..+...+++ ..++.++.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 57799999999999999999943 2222 223334554 3578899999999999875 44331 11111
Q ss_pred cCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCc---hhHHHHHHHHHHHHhcC
Q 046585 110 NTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGD---AGKKYIKWCANMAVAQN 186 (810)
Q Consensus 110 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 186 (810)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. .....+ .-.+.++.|.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122356666666777777777776 22 55666542 111110 000000 12356677777888887
Q ss_pred CCc
Q 046585 187 ISE 189 (810)
Q Consensus 187 ~~v 189 (810)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 754
No 59
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.69 E-value=0.81 Score=51.57 Aligned_cols=71 Identities=27% Similarity=0.301 Sum_probs=49.4
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccc
Q 046585 20 IAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 20 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyic 96 (810)
+|=++++...+.+..+..|++|+++|+..|=| ++|.|+...=+. ...+..++++|+++||.|++-..|=+.
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l 72 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVL 72 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHH
Confidence 56678887788899999999999999999999 999999632111 137889999999999999999877443
No 60
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=87.21 E-value=6 Score=42.57 Aligned_cols=98 Identities=13% Similarity=0.183 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHc-CCEEEEecCcccccccCCCCCCceecc
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDA-GLYAIIRIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~-gL~Vilr~GPyicaEw~~GG~P~WL~~ 110 (810)
.-|++.|+.+|++|++.|++-+........ ......+++++.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 779999999999999999996543211111 111446899999999999 6665543 2331 1
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccc
Q 046585 111 TPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIEN 158 (810)
Q Consensus 111 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiEN 158 (810)
.+...++.-+++..+.+.+.++..+ .+ |-+.|.+...+
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 1223345445555555566555555 22 44666666554
No 61
>PRK12568 glycogen branching enzyme; Provisional
Probab=87.18 E-value=14 Score=45.60 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCEEEE-ccc-------cCcC-----CCcCcceeccCchhHHHHHHHHHHcCCEEEEecCc
Q 046585 37 LIRKAKEGGVDAIET-YIF-------WDVH-----EPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGP 93 (810)
Q Consensus 37 ~l~k~ka~G~N~V~t-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GP 93 (810)
.|.-+|++|+|+|+. +|+ |.+. .|.+ .|....+|.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 467789999999996 443 4321 1222 4566789999999999999999987544
No 62
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.78 E-value=7.3 Score=41.76 Aligned_cols=129 Identities=18% Similarity=0.264 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCc--ceeccCchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCcee
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRR--KYDFSGNLDFVKFFKLVQDAGLYAI-IRIGPYVCAEWNYGGFPMWL 108 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G--~~df~g~~dl~~fl~la~~~gL~Vi-lr~GPyicaEw~~GG~P~WL 108 (810)
-.|++.|+.++++|+..|++.+ .++.+. ..+|+ ..++.++.++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~----~~~~~~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSV----DESDERLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEec----CCcccccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc-
Confidence 4799999999999999999953 232221 22333 3478999999999999875 3332 11000
Q ss_pred ccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccc--cccCchhHHHHHHHHHHHHhcC
Q 046585 109 HNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIM--EKYGDAGKKYIKWCANMAVAQN 186 (810)
Q Consensus 109 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g 186 (810)
.+.+.|+...++..+.++++++.-+ -+ |.++|.+.--..+.... ..+ ..-.+.++.|.+++++.|
T Consensus 80 ------~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~g 146 (284)
T PRK13210 80 ------PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQ 146 (284)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhC
Confidence 1234566666666666777666666 22 44566542100000000 000 122357788888888888
Q ss_pred CCc
Q 046585 187 ISE 189 (810)
Q Consensus 187 ~~v 189 (810)
+.+
T Consensus 147 v~l 149 (284)
T PRK13210 147 VML 149 (284)
T ss_pred CEE
Confidence 764
No 63
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=86.50 E-value=1.1 Score=52.55 Aligned_cols=68 Identities=9% Similarity=0.201 Sum_probs=47.1
Q ss_pred ecCCCCC----cccHH---HHHHHHHHcCCCEEEE-ccccCc-----CCCcCcce--------------eccCchhHHHH
Q 046585 24 IHYPRST----PEMWP---DLIRKAKEGGVDAIET-YIFWDV-----HEPQRRKY--------------DFSGNLDFVKF 76 (810)
Q Consensus 24 ~Hy~r~~----~~~W~---~~l~k~ka~G~N~V~t-yv~Wn~-----hEp~~G~~--------------df~g~~dl~~f 76 (810)
+|.|-++ .+.|. +.|.-+|++|+++|-+ +++-+. |--.+--| .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 3555543 35675 5677789999999987 465442 32222222 34456799999
Q ss_pred HHHHHHcCCEEEEec
Q 046585 77 FKLVQDAGLYAIIRI 91 (810)
Q Consensus 77 l~la~~~gL~Vilr~ 91 (810)
++.|++.||+||+-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999875
No 64
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.42 E-value=2.4 Score=48.53 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=80.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEcc-------------ccCcCCCcCccee-ccCchhHHHHHHHHHHcCCEEEEecCccc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYI-------------FWDVHEPQRRKYD-FSGNLDFVKFFKLVQDAGLYAIIRIGPYV 95 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv-------------~Wn~hEp~~G~~d-f~g~~dl~~fl~la~~~gL~Vilr~GPyi 95 (810)
.+..-.+.|.+++++|+|||-.-| +|..-. ||++- =.|..-|...|++|++.||.|+-+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 556667899999999999997322 355443 44432 22445788889999999999999988887
Q ss_pred ccccCCCC---CCceeccC-CCcc-cccCC-------hhHHHHHHHHHHH-HHHHHHhccccccCCCcEEEEccccccc
Q 046585 96 CAEWNYGG---FPMWLHNT-PGIQ-LRTNN-------DIFKNEMQVFTTK-IVNMCKEANLFASQGGPIILAQIENEYG 161 (810)
Q Consensus 96 caEw~~GG---~P~WL~~~-p~~~-~R~~d-------~~y~~~~~~~~~~-l~~~~~~~~~~~~~gGpII~~QiENEyg 161 (810)
-|--..-. -|.|+... |+.. .|... .++..+|+.|+.. +++.++++ .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 66422211 36677652 4432 23332 3566889999888 55555533 477788866554
No 65
>PRK14706 glycogen branching enzyme; Provisional
Probab=85.69 E-value=17 Score=44.27 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=36.5
Q ss_pred HHHHHHcCCCEEEE-ccc-------cCcC-----CCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 38 IRKAKEGGVDAIET-YIF-------WDVH-----EPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 38 l~k~ka~G~N~V~t-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
+.-+|++|+|+|+. .|. |.+. .|.+ .|....+|.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999995 331 3221 1111 24556799999999999999999864
No 66
>PRK01060 endonuclease IV; Provisional
Probab=84.25 E-value=16 Score=39.26 Aligned_cols=95 Identities=19% Similarity=0.298 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCceeccC
Q 046585 34 WPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYA--IIRIGPYVCAEWNYGGFPMWLHNT 111 (810)
Q Consensus 34 W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~V--ilr~GPyicaEw~~GG~P~WL~~~ 111 (810)
+++.|++++++|++.|+..+.. -+.-.++.++- .++.++-++++++||.+ +.--+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~-p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~h~~~~---------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGN-PQQWKRKPLEE---LNIEAFKAACEKYGISPEDILVHAPYL---------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCC-CCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEEecceE----------------
Confidence 8999999999999999995431 12211222222 26888999999999973 22233431
Q ss_pred CCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcc
Q 046585 112 PGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI 156 (810)
Q Consensus 112 p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 156 (810)
+.+-+.|+..+++..+.+++.++.-+ .+ |.++|-+..
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h~ 110 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFHP 110 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEcC
Confidence 12334577788777777777777766 32 445665543
No 67
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=84.24 E-value=3.4 Score=41.55 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=74.3
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccc
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLR 117 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R 117 (810)
|+.++++|+..|+....+....... ...++++.++++++||.+..--.+.. +. .+....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~----------~~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FW----------SPDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SS----------CTGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---cc----------ccccccc
Confidence 6789999999999965533222221 34789999999999999653221110 10 1111134
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccc--ccccccc--cccCchhHHHHHHHHHHHHhcCCCc
Q 046585 118 TNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIE--NEYGNIM--EKYGDAGKKYIKWCANMAVAQNISE 189 (810)
Q Consensus 118 ~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~v 189 (810)
+..++ .+...+.+.+.++..+. + |.+.|.+..- +...... ..+ ..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 44444 77777788888888773 2 5677777754 2222110 001 123457788888888888654
No 68
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=83.80 E-value=1.9 Score=53.03 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHcCCCEEEE-ccc-------cCcCCC---cCcceeccCchhHHHHHHHHHHcCCEEEEecCc
Q 046585 32 EMWPDLIRKAKEGGVDAIET-YIF-------WDVHEP---QRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGP 93 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~t-yv~-------Wn~hEp---~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GP 93 (810)
+.|++.|..+|++|+|+|+. .|+ |.++-. .+ .-.|....+|.+|++.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 45788999999999999996 332 333211 01 114556679999999999999999987543
No 69
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=83.10 E-value=13 Score=41.71 Aligned_cols=137 Identities=16% Similarity=0.278 Sum_probs=88.1
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHH---HcCCEEEEecCcccccccCCCCC
Q 046585 28 RSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQ---DAGLYAIIRIGPYVCAEWNYGGF 104 (810)
Q Consensus 28 r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~---~~gL~Vilr~GPyicaEw~~GG~ 104 (810)
-..++.++..++.+|+.|++.--.|-.|. .|.+-|++-++..- +.+|...|. +.+-.|.
T Consensus 54 l~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~---- 115 (345)
T PF14307_consen 54 LRDPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWT---- 115 (345)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----
Confidence 34788899999999999999999988884 45667777775543 345554454 1122221
Q ss_pred CceeccCCCcccccCChhHH--HHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCchhHHHHHHHHHHH
Q 046585 105 PMWLHNTPGIQLRTNNDIFK--NEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMA 182 (810)
Q Consensus 105 P~WL~~~p~~~~R~~d~~y~--~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~ 182 (810)
=.|-....++.+- ..|. +..++.++.|++.+++..++--+|-||+++=--.++ +.-+++++.+++.+
T Consensus 116 ~~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a 184 (345)
T PF14307_consen 116 RRWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEA 184 (345)
T ss_pred hccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHH
Confidence 1232222222211 1121 334677788888888765666688899988332222 24578999999999
Q ss_pred HhcCCCcCeEE
Q 046585 183 VAQNISEPWIM 193 (810)
Q Consensus 183 ~~~g~~vp~~~ 193 (810)
+++|+..+.+.
T Consensus 185 ~~~G~~giyii 195 (345)
T PF14307_consen 185 KEAGLPGIYII 195 (345)
T ss_pred HHcCCCceEEE
Confidence 99999877544
No 70
>PRK14705 glycogen branching enzyme; Provisional
Probab=82.57 E-value=21 Score=46.45 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCEEEE-ccc-------cCcC-----CCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 37 LIRKAKEGGVDAIET-YIF-------WDVH-----EPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 37 ~l~k~ka~G~N~V~t-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.|.-+|++|+|+|+. +|+ |.+. .|.+ .|.+..||.+|++.|+++||.|||-.
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~---ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS---RFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999996 452 4321 1111 35567899999999999999999874
No 71
>PRK12313 glycogen branching enzyme; Provisional
Probab=81.90 E-value=2.7 Score=51.13 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEE-ccc-------cCc-----CCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 38 IRKAKEGGVDAIET-YIF-------WDV-----HEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 38 l~k~ka~G~N~V~t-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
|.-+|++|+|+|.. +|+ |.+ ..+.| .|.+..+|.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58889999999995 553 221 11111 46667899999999999999999874
No 72
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.76 E-value=1.7 Score=46.55 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEccccCc----CCCcCcce-----eccCchhHHHHHHHHHHcCCEEEEec
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDV----HEPQRRKY-----DFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~----hEp~~G~~-----df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.+.|.-+|++|+|+|.+-=++.. |--.+--| .|....+|.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 46788899999999997422221 11111111 13455799999999999999999765
No 73
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=81.30 E-value=6.8 Score=46.04 Aligned_cols=68 Identities=21% Similarity=0.372 Sum_probs=42.4
Q ss_pred EEecCCCCCcccHHHHHHHHH-HcCCCEEEEc-cc---cCcC-C-CcCc--ceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 22 GSIHYPRSTPEMWPDLIRKAK-EGGVDAIETY-IF---WDVH-E-PQRR--KYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 22 G~~Hy~r~~~~~W~~~l~k~k-a~G~N~V~ty-v~---Wn~h-E-p~~G--~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
|+-|....-++.|+..|+.++ +.||.-|++- +| .... | ..+| .|||+ .||+++|...+.||+-++..|
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE-
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEEE
Confidence 334444456788999999886 8899999972 22 1111 1 1223 39999 999999999999999877765
No 74
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=80.48 E-value=3.2 Score=41.11 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=36.3
Q ss_pred EeeeecCCCCC--CCCCCCcC--cccCCchHH-HHHhhcCCCCCcEEEec----CCCcCC-CCCC--CCceEEEEEEEc
Q 046585 743 IQFASFGDPLG--TCGSFSVG--NHQADQTVS-VVEKLCLGKPSCSIEVS----QSTFGH-SSLG--NLTSRLAVQAVC 809 (810)
Q Consensus 743 I~~A~yGr~~~--~C~~~~~~--~C~~~~s~~-~v~~~C~Gk~~C~v~~~----~~~Fg~-DPC~--gt~KyL~v~y~C 809 (810)
|..|-||.... .+...... .+..+...+ .|.=.|.=+.++-.... ..+.|- |||| |+.|.|.|.|+.
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq~lV~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~f 133 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQALVKDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYRF 133 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhhhEeecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEEE
Confidence 78899999432 33211100 111122222 23334444555544333 223344 9999 899999999974
No 75
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=80.40 E-value=3 Score=49.78 Aligned_cols=53 Identities=21% Similarity=0.396 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------cCc-----CCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 36 DLIRKAKEGGVDAIET-YIF-------WDV-----HEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 36 ~~l~k~ka~G~N~V~t-yv~-------Wn~-----hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
++|.-+|++|+|+|.. +|+ |.+ ..+.+ .|.+..+|.+|++.|++.||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999996 452 322 12222 35567799999999999999999874
No 76
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=80.16 E-value=31 Score=36.79 Aligned_cols=130 Identities=15% Similarity=0.076 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEE-ecCcccccccCCCCCCceecc
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAII-RIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vil-r~GPyicaEw~~GG~P~WL~~ 110 (810)
.-|++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .++ .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc-
Confidence 358999999999999999983211 011111 121 24788899999999999853 332 123333321
Q ss_pred CCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccc-cc-ccccccCchhHHHHHHHHHHHHhcCCC
Q 046585 111 TPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENE-YG-NIMEKYGDAGKKYIKWCANMAVAQNIS 188 (810)
Q Consensus 111 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~ 188 (810)
..++.-+++..+.+++.++.-+ . =|.+.|.+-.-.. +. .....+ ..-.+.++.|.+.+++.|+.
T Consensus 79 -------~~~~~~r~~~~~~~~~~i~~a~--~----lGa~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 79 -------LGDEHMRRESLDMIKLAMDMAK--E----MNAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMD 144 (275)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHH--H----hCCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCE
Confidence 1234445555555555555555 2 2455555532111 00 000001 12335788888888888775
Q ss_pred c
Q 046585 189 E 189 (810)
Q Consensus 189 v 189 (810)
+
T Consensus 145 l 145 (275)
T PRK09856 145 L 145 (275)
T ss_pred E
Confidence 4
No 77
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=80.01 E-value=30 Score=39.55 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=53.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc----cccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCC
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETY----IFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI-IRIGPYVCAEWNYGGF 104 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~ty----v~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi-lr~GPyicaEw~~GG~ 104 (810)
++....+++++++++|+..|+.. ++|..-..+. ..++.++-+++++.||.|. +-++-+....|..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g-- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG-- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCCccccCC--
Confidence 44566899999999999999963 1221111100 2357889999999999975 34321111112222
Q ss_pred CceeccCCCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 105 PMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 105 P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
.+-+.|+..+++.-+.+++.++.-+
T Consensus 101 ----------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 ----------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2334577776665555566555555
No 78
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=78.60 E-value=7.2 Score=43.29 Aligned_cols=111 Identities=22% Similarity=0.311 Sum_probs=69.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEc-------cccCcCCCcCcceecc-C-chhHHHHHHHHHHcCCEEEEecCcccccccC
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETY-------IFWDVHEPQRRKYDFS-G-NLDFVKFFKLVQDAGLYAIIRIGPYVCAEWN 100 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~ty-------v~Wn~hEp~~G~~df~-g-~~dl~~fl~la~~~gL~Vilr~GPyicaEw~ 100 (810)
.++.-++.|+.+|+.|+|+|-+= |.+..-.|..-+..-. . ..|+.++++.++++||++|.|.=-+-- ..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD-~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKD-PVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecC-hHH
Confidence 45667899999999999998752 3454433333222211 1 369999999999999999999732210 000
Q ss_pred CCCCCceeccC-CCcccccCC-----hhHHHHHHHHHHHHHHHHHhc
Q 046585 101 YGGFPMWLHNT-PGIQLRTNN-----DIFKNEMQVFTTKIVNMCKEA 141 (810)
Q Consensus 101 ~GG~P~WL~~~-p~~~~R~~d-----~~y~~~~~~~~~~l~~~~~~~ 141 (810)
..--|.|-.+. .+-..|..+ .+|.+++.+|.-.|+..+++.
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 11145565432 111112111 368899999999999998854
No 79
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.33 E-value=27 Score=37.54 Aligned_cols=127 Identities=17% Similarity=0.260 Sum_probs=74.5
Q ss_pred cccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCceec
Q 046585 31 PEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI-IRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 31 ~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi-lr~GPyicaEw~~GG~P~WL~ 109 (810)
..-|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++.. ..+
T Consensus 20 ~~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~----- 84 (283)
T PRK13209 20 GECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRF----- 84 (283)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------ccc-----
Confidence 346999999999999999999532 1111 01112222 2368899999999999875 332210 001
Q ss_pred cCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCc-------hhHHHHHHHHHHH
Q 046585 110 NTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGD-------AGKKYIKWCANMA 182 (810)
Q Consensus 110 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~-------~~~~y~~~l~~~~ 182 (810)
.+-+.|+.-++...+.+++.++..+ .+ |.++|.+. |.. ..++. .-.+.++.|.+++
T Consensus 85 -----~~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A 147 (283)
T PRK13209 85 -----PLGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELA 147 (283)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHH
Confidence 1123456666666777777777776 22 56666542 110 00110 1134677788888
Q ss_pred HhcCCCc
Q 046585 183 VAQNISE 189 (810)
Q Consensus 183 ~~~g~~v 189 (810)
++.|+.+
T Consensus 148 ~~~GV~i 154 (283)
T PRK13209 148 SRASVTL 154 (283)
T ss_pred HHhCCEE
Confidence 8888754
No 80
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=77.32 E-value=28 Score=36.95 Aligned_cols=98 Identities=23% Similarity=0.431 Sum_probs=66.5
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCc--ceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCce
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRR--KYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMW 107 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G--~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~W 107 (810)
..-.|+++|.-+|++||+-|++ +.-|.-+. +.||+. .....+.+++++.|+ |. |.+|
T Consensus 16 ~~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv----~i-pSmC----------- 74 (287)
T COG3623 16 NGFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGV----RI-PSMC----------- 74 (287)
T ss_pred CCCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCC----Cc-cchh-----------
Confidence 4567999999999999999999 88887654 677772 344467788899998 33 3333
Q ss_pred eccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcc
Q 046585 108 LHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI 156 (810)
Q Consensus 108 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 156 (810)
|..+...-+=|.|+.-.+...+.+.+-+..-. +| .|=-+|+
T Consensus 75 lSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL 115 (287)
T COG3623 75 LSAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL 115 (287)
T ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee
Confidence 11122122457899888888887777555444 33 3556676
No 81
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=77.03 E-value=4.5 Score=43.25 Aligned_cols=52 Identities=19% Similarity=0.414 Sum_probs=39.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 31 PEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 31 ~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566789999999999999998 45555443 34777999999999999999987
No 82
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=76.75 E-value=5.5 Score=44.13 Aligned_cols=72 Identities=25% Similarity=0.300 Sum_probs=59.7
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcc-eeccCchhHHHHHHHHHHcCCEEEEecCcccccc
Q 046585 20 IAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRK-YDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAE 98 (810)
Q Consensus 20 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~-~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaE 98 (810)
+|=++.+.|.+.+.=..-|++|...|+..|=| ++|.|.+.. --|. -+.++++.|+++||+||+-.-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 56678888889888899999999999999988 999998852 1122 677899999999999999998877555
No 83
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=76.34 E-value=48 Score=35.01 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEE
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAII 89 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vil 89 (810)
-+++.+++++++|++.|+...++ ..++.++.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984322 13678899999999999863
No 84
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=76.21 E-value=45 Score=35.54 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCCEEEEccccCcCCCcCcce-eccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCC
Q 046585 34 WPDLIRKAKEGGVDAIETYIFWDVHEPQRRKY-DFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTP 112 (810)
Q Consensus 34 W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~-df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p 112 (810)
-++.|+.+.++|++.|+. ...+|..-.- +++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 357899999999999999 5555533110 122 236889999999999986542 3432
Q ss_pred CcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcc
Q 046585 113 GIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI 156 (810)
Q Consensus 113 ~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 156 (810)
+.+.+.|+..+++..+++.+.++..+ .+ |.++|.+..
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h~ 105 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFHP 105 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEcc
Confidence 12445677778777777888777666 22 556666543
No 85
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=76.16 E-value=5.1 Score=48.30 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEE-ccc-------cCcCC-----CcCcceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 35 PDLIRKAKEGGVDAIET-YIF-------WDVHE-----PQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~t-yv~-------Wn~hE-----p~~G~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
.+.|--+|+||+++|+. .|. |.+-- |.. .|..-.||.+|||.|+++||-|||-
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 56788899999999996 231 43311 111 3445579999999999999999986
No 86
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=75.70 E-value=42 Score=35.65 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEE
Q 046585 34 WPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAII 89 (810)
Q Consensus 34 W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vil 89 (810)
++++|++++++|++.|++. . |. ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 7899999999999999982 1 11 13789999999999999854
No 87
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=75.63 E-value=4.2 Score=48.53 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHcCCCEEEE-ccccCc---CCCcCcce-----eccCchhHHHHHHHHHHcCCEEEEec
Q 046585 33 MWPDLIRKAKEGGVDAIET-YIFWDV---HEPQRRKY-----DFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~t-yv~Wn~---hEp~~G~~-----df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
-+.++|.-+|++|+|+|-+ .++-+- |--.+..| .|....+|.++++.|++.||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567888999999999987 454321 11111111 14566799999999999999999874
No 88
>PLN02960 alpha-amylase
Probab=75.47 E-value=5.4 Score=49.66 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCEEEE-ccc-------cCcCCCcC--cceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 36 DLIRKAKEGGVDAIET-YIF-------WDVHEPQR--RKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 36 ~~l~k~ka~G~N~V~t-yv~-------Wn~hEp~~--G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
+.|.-+|++|+|+|+. .|+ |.+.-.-- =.-.|....+|.+|++.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999999997 453 43221100 01134556799999999999999999875
No 89
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=74.86 E-value=27 Score=39.71 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=73.9
Q ss_pred HHcCCCEEEEccc---------------cCcC---CCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCC
Q 046585 42 KEGGVDAIETYIF---------------WDVH---EPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGG 103 (810)
Q Consensus 42 ka~G~N~V~tyv~---------------Wn~h---Ep~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG 103 (810)
|-+|||.+|.-|- |--- .+..|.|||+.+..=..||+.|++.|...++-+ .=-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecC
Confidence 5689999996552 2111 245789999987777789999999999987765 223
Q ss_pred CCceeccCCCc----ccccC-ChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccc-------cccC-ch
Q 046585 104 FPMWLHNTPGI----QLRTN-NDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIM-------EKYG-DA 170 (810)
Q Consensus 104 ~P~WL~~~p~~----~~R~~-d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~-~~ 170 (810)
.|.|+...-.. ....+ .+...++...|+..++++++.+ |=+|=-+--=||..... +.+. +.
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e 201 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEE 201 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHH
Confidence 68888753210 00111 2456677778888888888643 32555566669986421 0011 23
Q ss_pred hHHHHHHHHHHHHhcCCCcCeEEecC
Q 046585 171 GKKYIKWCANMAVAQNISEPWIMCQQ 196 (810)
Q Consensus 171 ~~~y~~~l~~~~~~~g~~vp~~~~~~ 196 (810)
..+.++.|...++++|++.-+..|+.
T Consensus 202 ~a~vI~~L~~~L~~~GL~t~I~~~Ea 227 (384)
T PF14587_consen 202 QADVIRALDKALKKRGLSTKISACEA 227 (384)
T ss_dssp HHHHHHHHHHHHHHHT-S-EEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEecch
Confidence 46789999999999999877665543
No 90
>PRK10785 maltodextrin glucosidase; Provisional
Probab=73.01 E-value=7.1 Score=47.17 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEE-ccccC--cCCCcCcce-----eccCchhHHHHHHHHHHcCCEEEEec
Q 046585 35 PDLIRKAKEGGVDAIET-YIFWD--VHEPQRRKY-----DFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~t-yv~Wn--~hEp~~G~~-----df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.+.|.-+|++|+|+|-. +||=+ .|---...| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999997 56632 222112111 25566899999999999999999754
No 91
>PRK09505 malS alpha-amylase; Reviewed
Probab=72.60 E-value=7.2 Score=47.81 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCEEEE-ccccCcCCCc----Cc------------------ceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 34 WPDLIRKAKEGGVDAIET-YIFWDVHEPQ----RR------------------KYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 34 W~~~l~k~ka~G~N~V~t-yv~Wn~hEp~----~G------------------~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
+.+.|.-+|++|+|+|-+ .|+=+.|... .| .-.|....+|.++++.|++.||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 467788899999999986 5654433211 11 113555679999999999999999987
Q ss_pred c
Q 046585 91 I 91 (810)
Q Consensus 91 ~ 91 (810)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 92
>PRK09989 hypothetical protein; Provisional
Probab=71.73 E-value=47 Score=35.27 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEE
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAII 89 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vil 89 (810)
-.+++|++++++|+..|++-.+|. .+.+++.++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999943332 2366788889999999874
No 93
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=71.30 E-value=15 Score=41.92 Aligned_cols=53 Identities=17% Similarity=0.348 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
..+.|+++++.+|++||+.... |+.- ...+.. ..|...++.|++.|++++|-+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaL----Nig~--~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFAL----NIGS--SDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----eccc--CCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 7899999999999999999998 5542 222332 378888999999999999987
No 94
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=71.11 E-value=8.3 Score=46.13 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCEEEE-ccccCcCCCc-Ccce----------eccCchhHHHHHHHHHHcCCEEEEec
Q 046585 34 WPDLIRKAKEGGVDAIET-YIFWDVHEPQ-RRKY----------DFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 34 W~~~l~k~ka~G~N~V~t-yv~Wn~hEp~-~G~~----------df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
+.++|.-+|++|+++|-+ +|+-+ |. ..-| +|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457889999999999987 45422 11 1122 24556799999999999999999764
No 95
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=69.80 E-value=8.6 Score=46.55 Aligned_cols=56 Identities=16% Similarity=0.334 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCEEEE-ccc---------------cCcCCCc----Cccee----cc--CchhHHHHHHHHHHcCCEEEE
Q 046585 36 DLIRKAKEGGVDAIET-YIF---------------WDVHEPQ----RRKYD----FS--GNLDFVKFFKLVQDAGLYAII 89 (810)
Q Consensus 36 ~~l~k~ka~G~N~V~t-yv~---------------Wn~hEp~----~G~~d----f~--g~~dl~~fl~la~~~gL~Vil 89 (810)
+.|.-+|++|+|+|+. +|+ |.+.--. ++.|- |. ...+|.+|++.|++.||.|||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 4589999999999996 454 3222100 00110 10 026899999999999999998
Q ss_pred ec
Q 046585 90 RI 91 (810)
Q Consensus 90 r~ 91 (810)
-.
T Consensus 248 Dv 249 (605)
T TIGR02104 248 DV 249 (605)
T ss_pred EE
Confidence 74
No 96
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=69.55 E-value=6.6 Score=46.79 Aligned_cols=58 Identities=24% Similarity=0.225 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHcCCCEEEE-ccccC---cCCCcCcce-----eccCchhHHHHHHHHHHcCCEEEEe
Q 046585 33 MWPDLIRKAKEGGVDAIET-YIFWD---VHEPQRRKY-----DFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~t-yv~Wn---~hEp~~G~~-----df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
-+.+.|.-+|++|+|+|-. +|+=+ -|--..-.| .|.+..|+.++++.|++.||+|||-
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3567899999999999987 45411 111001111 2456679999999999999999985
No 97
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=68.78 E-value=9.3 Score=42.00 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=49.3
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEccccCcCCCc-CcceeccCch--hHHHHHHHHHHcCCEEEEecCcccc
Q 046585 29 STPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQ-RRKYDFSGNL--DFVKFFKLVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 29 ~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~-~G~~df~g~~--dl~~fl~la~~~gL~Vilr~GPyic 96 (810)
...+..++.++++|+.||..=.+.+-..++... -+.|.|.-.+ |..++++..+++|++|++..=|+|+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 366777899999999997765544443333322 2456655332 8999999999999999999888774
No 98
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=66.28 E-value=20 Score=39.21 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=70.4
Q ss_pred EEEEEEecCCCCCcc-cHH---HHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCc
Q 046585 18 VIIAGSIHYPRSTPE-MWP---DLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGP 93 (810)
Q Consensus 18 ~~~sG~~Hy~r~~~~-~W~---~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GP 93 (810)
+-+++..|+...+.. ..+ ++|++--++|.+.+-|-. .||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~----------~Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQL----------FYDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccc----------eecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888888764332 222 345544469999999833 35555 7889999999997765445554
Q ss_pred ccc---------cccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 046585 94 YVC---------AEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKE 140 (810)
Q Consensus 94 yic---------aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 140 (810)
..+ +||..--+|.|+.+.=. ....+++...+.--++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333 57877778999975100 01223345566677777778888773
No 99
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=66.11 E-value=57 Score=36.47 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=52.5
Q ss_pred cCcEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccc----cCcCCCc------C-----------cce
Q 046585 7 ANAIIIDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIF----WDVHEPQ------R-----------RKY 65 (810)
Q Consensus 7 ~~~f~ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~----Wn~hEp~------~-----------G~~ 65 (810)
-|+|+||=-| ||+ +.+..++.|+.|...++|++..++- |.+.-+. . |.|
T Consensus 3 ~RG~mlD~aR--------~f~--~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HFF--TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CCc--CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 3556665443 443 7888999999999999999998873 6543221 2 233
Q ss_pred eccCchhHHHHHHHHHHcCCEEEEec
Q 046585 66 DFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 66 df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
. ..|+.++++.|++.|+.||-.+
T Consensus 73 T---~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 T---QEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred C---HHHHHHHHHHHHHcCCEEEEec
Confidence 3 3599999999999999998654
No 100
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=66.06 E-value=40 Score=39.91 Aligned_cols=276 Identities=17% Similarity=0.277 Sum_probs=131.0
Q ss_pred EEeEEEEEEecCC------CCCcccHHHHHHHH---HHcCCCEEEEccc--------cCcCCCcCccee---ccCch-h-
Q 046585 15 KRKVIIAGSIHYP------RSTPEMWPDLIRKA---KEGGVDAIETYIF--------WDVHEPQRRKYD---FSGNL-D- 72 (810)
Q Consensus 15 ~p~~~~sG~~Hy~------r~~~~~W~~~l~k~---ka~G~N~V~tyv~--------Wn~hEp~~G~~d---f~g~~-d- 72 (810)
+++.=+||++=-. +.+++.=++.|+.+ +-+|++.+|+.|- +.+-+ .|+-|+ |+=.+ |
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 3444467776321 33443323333333 4589999998874 33322 233222 22111 2
Q ss_pred --HHHHHHHHHHc--CCEEEEecCcccccccCCCCCCceeccCCCc----ccc-cCChhHHHHHHHHHHHHHHHHHhccc
Q 046585 73 --FVKFFKLVQDA--GLYAIIRIGPYVCAEWNYGGFPMWLHNTPGI----QLR-TNNDIFKNEMQVFTTKIVNMCKEANL 143 (810)
Q Consensus 73 --l~~fl~la~~~--gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~----~~R-~~d~~y~~~~~~~~~~l~~~~~~~~~ 143 (810)
+..+|+.|++. +|+++.-| |. .|+||.....+ .++ ...+.|.++...|+.+-++.+++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--- 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--- 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH---
Confidence 34577777653 57888777 65 79999864332 244 23467888888888888888874
Q ss_pred cccCCCcEEEEcccccccccc---cccC-----c-hhHHHHH-HHHHHHHhcCC--CcCeEEecCC--CCCc---cccc-
Q 046585 144 FASQGGPIILAQIENEYGNIM---EKYG-----D-AGKKYIK-WCANMAVAQNI--SEPWIMCQQS--DAPE---PMIN- 205 (810)
Q Consensus 144 ~~~~gGpII~~QiENEyg~~~---~~~~-----~-~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~- 205 (810)
+|=+|-++-+.||..... ..|. + ..++|++ +|.-.+++.++ ++-++..|.. ..+. .++.
T Consensus 220 ---~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 220 ---EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ---TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ---CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 345999999999986410 1121 1 3466775 48889999877 6666665532 1221 1121
Q ss_pred -----CCC--Cccc--C-cC-------CCCCCCCCccccccccccccccCCCCCC---CCHHHHHHHHHHHHHcCCceee
Q 046585 206 -----TCN--GFYC--D-QF-------TPNNPKSPKMWTENWTGWFKLWGGRDPQ---RTAEDLAFSVARFFQSGGVLNN 265 (810)
Q Consensus 206 -----~~n--g~~~--~-~~-------~~~~p~~P~~~~E~~~GWfd~WG~~~~~---~~~~~~~~~~~~~l~~g~s~~n 265 (810)
-+. ++++ . .. ....|++.++.||-..|.- .|+..... ..++..+..+..-+..+.+ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 011 1222 1 11 1346899999999876531 12211111 1223344444444555543 2
Q ss_pred eeee------eccCCCCCCC-CCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHHh
Q 046585 266 YYMY------HGGTNFGRTA-GGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHEAIKQ 317 (810)
Q Consensus 266 ~YM~------hGGTNfG~~~-Ga~~~~TSYDYdApL~E~G~~~t~Ky~~lr~l~~~i~~ 317 (810)
+-+| .||-|++.-. .++..+.. +. +|. .++|.|+.|..+.+|++.
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~-~~----~~~--~~~p~yY~~gHfSKFV~P 425 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDS-DT----GEF--YKQPEYYAMGHFSKFVRP 425 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEG-GG----TEE--EE-HHHHHHHHHHTTS-T
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEc-CC----CeE--EEcHHHHHHHHHhcccCC
Confidence 2222 4888875321 12221111 11 121 237899999888777653
No 101
>PLN02361 alpha-amylase
Probab=65.81 E-value=14 Score=42.57 Aligned_cols=57 Identities=7% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCEEEEc-cc--cCcCCCcCcc-e----eccCchhHHHHHHHHHHcCCEEEEec
Q 046585 35 PDLIRKAKEGGVDAIETY-IF--WDVHEPQRRK-Y----DFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~ty-v~--Wn~hEp~~G~-~----df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.+.|.-++++|+++|-+. ++ ...|--.+.. | .|....+|.++++.|++.||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 456777899999999874 33 1222222222 2 24556799999999999999999764
No 102
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=65.55 E-value=2.5 Score=44.60 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
-...+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999997766555444444 8999999999999999999
No 103
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=64.77 E-value=12 Score=31.52 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=18.4
Q ss_pred CcceEEEEEECCEEEEEEec
Q 046585 476 TKGHGLHAYVNGQLIGTQFS 495 (810)
Q Consensus 476 ~~~D~a~vfvng~~~G~~~~ 495 (810)
...|.|.||++++++|++++
T Consensus 25 k~~dsaEV~~g~EfiGvi~~ 44 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYR 44 (63)
T ss_pred CCCCceEEEeCCEEEEEEEe
Confidence 46899999999999999987
No 104
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=64.57 E-value=13 Score=39.60 Aligned_cols=51 Identities=16% Similarity=0.345 Sum_probs=42.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
...++-|+..|+.||++|++ ..|..++. ..+..++|+.+++.||.|+-..|
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEecccc
Confidence 56677888999999999998 45666654 44788999999999999998877
No 105
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=63.66 E-value=13 Score=44.36 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHcCCCEEEEc-cccCcCCCcCcce--------eccCc----hhHHHHHHHHHHcCCEEEEecCcccccc
Q 046585 32 EMWPDLIRKAKEGGVDAIETY-IFWDVHEPQRRKY--------DFSGN----LDFVKFFKLVQDAGLYAIIRIGPYVCAE 98 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~ty-v~Wn~hEp~~G~~--------df~g~----~dl~~fl~la~~~gL~Vilr~GPyicaE 98 (810)
+.=++.|..|+...||.|+.| ..|-+|.|-|+.= |+.++ .-+...|+.|++.||.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 455789999999999999999 7899999987643 23332 3678999999999999985432222222
Q ss_pred c--CCCCCCceecc
Q 046585 99 W--NYGGFPMWLHN 110 (810)
Q Consensus 99 w--~~GG~P~WL~~ 110 (810)
. ..|=.|.|-+-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 2 35667888753
No 106
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=63.47 E-value=19 Score=29.86 Aligned_cols=55 Identities=15% Similarity=0.049 Sum_probs=42.8
Q ss_pred cccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEE
Q 046585 31 PEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAII 89 (810)
Q Consensus 31 ~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vil 89 (810)
|-...+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..++.|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4456788999999999999999732 333 58777765 5678999999999988754
No 107
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=62.03 E-value=29 Score=45.56 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=56.4
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-ccc-cC---cCCCcCccee----c----cCchhHHHHHHHHHHc-CCEEEEecCccc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIET-YIF-WD---VHEPQRRKYD----F----SGNLDFVKFFKLVQDA-GLYAIIRIGPYV 95 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~t-yv~-Wn---~hEp~~G~~d----f----~g~~dl~~fl~la~~~-gL~Vilr~GPyi 95 (810)
+-+.|+++|+.+|++|.|+|.. +|+ =. ..=...+.+. | .+..|+.++++.+++. ||++|+-.=
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV--- 206 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV--- 206 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee---
Confidence 4478999999999999999985 444 11 0001112221 3 3567899999999985 999997631
Q ss_pred ccccCCCC-CCceeccCCCcccccCChhHHH
Q 046585 96 CAEWNYGG-FPMWLHNTPGIQLRTNNDIFKN 125 (810)
Q Consensus 96 caEw~~GG-~P~WL~~~p~~~~R~~d~~y~~ 125 (810)
|+-=+ -=.||..+|+.-.-..+.+||+
T Consensus 207 ---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 207 ---FNHTANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred ---ecccccCCHHHHhChHhhcCCCCCchhh
Confidence 22211 1257777776444444444443
No 108
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=61.11 E-value=36 Score=41.74 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHcCCCEEE---------------EccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccc
Q 046585 32 EMWPDLIRKAKEGGVDAIE---------------TYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~---------------tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyic 96 (810)
+.-...|+++|++|+|||= .|++|.+.--+...|| -| ...++.+.|+.|-.+..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-----~~--aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-----RV--AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-----HH--HHHHHHhhCCEEEEeccceee
Confidence 5567889999999999985 5677833322222332 11 345588999999999999853
Q ss_pred c---------ccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccc
Q 046585 97 A---------EWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEY 160 (810)
Q Consensus 97 a---------Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEy 160 (810)
+ +++..+-|.... |+-..| =.+|..++++|+..|.+-|+++ .+|=++|..-+-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 2 122112222111 110122 2457789999999999999854 245566655544
No 109
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=60.41 E-value=15 Score=32.55 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=33.5
Q ss_pred ceeEeCCcceEEEEEECCEEEEEEecccccccccccCCCceeeEEcccccccCCccEEEEEEEccCcc
Q 046585 470 ATLRVSTKGHGLHAYVNGQLIGTQFSRQATGQQMVTGDDYSFGFDKAVSSLKKGVNVISLLSVTVGLT 537 (810)
Q Consensus 470 ~~L~v~~~~D~a~vfvng~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~ 537 (810)
..|++.+-....+-||||+++|+... . ..+.+ +. ...|.++|++ ++..|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~-----------~-~~~~~--~~--~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQP-----------G-HQLFW--QP--DRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCC-----------C-CeEEe--CC--CCCeeEEEEE-EcCCCCE
Confidence 44555554569999999999987653 1 11222 21 2678999988 7777764
No 110
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=59.78 E-value=14 Score=45.53 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCEEEE-ccccCcCC---CcCc-----ce---e-------c---cCchhHHHHHHHHHHcCCEEEEec
Q 046585 37 LIRKAKEGGVDAIET-YIFWDVHE---PQRR-----KY---D-------F---SGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 37 ~l~k~ka~G~N~V~t-yv~Wn~hE---p~~G-----~~---d-------f---~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.|.-+|++|+|+|.. +|+=...+ ...| -| | | ....+|.++++.|++.||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999996 55511111 1111 01 1 2 124689999999999999999875
No 111
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=59.26 E-value=14 Score=48.32 Aligned_cols=56 Identities=30% Similarity=0.447 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCEEEE-ccccCcCCCc---Ccc-----ee----------cc--CchhHHHHHHHHHHcCCEEEEec
Q 046585 36 DLIRKAKEGGVDAIET-YIFWDVHEPQ---RRK-----YD----------FS--GNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 36 ~~l~k~ka~G~N~V~t-yv~Wn~hEp~---~G~-----~d----------f~--g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
+.|.-+|++|+|+|+. +|+=+..|.. .|. |+ |. +..+|.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999997 5653322211 110 21 33 66799999999999999999874
No 112
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=58.39 E-value=13 Score=39.77 Aligned_cols=84 Identities=7% Similarity=-0.049 Sum_probs=59.1
Q ss_pred cCCCceEEecCCCCeEEEEeeeecCCCC---CCCCCC----CcCcccCCchHHHHHhhcCCCCCcEEEecCCCcCCCCC-
Q 046585 725 QEGNKVELRCQGHRKISEIQFASFGDPL---GTCGSF----SVGNHQADQTVSVVEKLCLGKPSCSIEVSQSTFGHSSL- 796 (810)
Q Consensus 725 ~e~~~~~L~C~~g~~i~~I~~A~yGr~~---~~C~~~----~~~~C~~~~s~~~v~~~C~Gk~~C~v~~~~~~Fg~DPC- 796 (810)
|+-+.+...|+++.. ..+..+.+++.+ .+|..- ..-.|.....+..+...|.+++.|++..++.-|+ -+|
T Consensus 140 ~~p~~~~~~~~~~~~-~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~~~ 217 (265)
T KOG4729|consen 140 CTPSPTDPPRSEIRL-ECREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH-CRHG 217 (265)
T ss_pred ecCCCCCCccCcccc-hhhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc-cccc
Confidence 455566777777653 467777778743 355431 1224445566778999999999999999988887 677
Q ss_pred CCCceEEEEEEEcC
Q 046585 797 GNLTSRLAVQAVCK 810 (810)
Q Consensus 797 ~gt~KyL~v~y~C~ 810 (810)
++-.+|+.|.+.|+
T Consensus 218 ~~~~~~~~~n~e~~ 231 (265)
T KOG4729|consen 218 HLHKVYVTVTEEIF 231 (265)
T ss_pred ceeEEEEEeccccc
Confidence 55568998888764
No 113
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=57.08 E-value=23 Score=44.22 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-ccccC----cCCCcCc-----ceeccCchhHHHHHHHHHHcCCEEEEecCc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIET-YIFWD----VHEPQRR-----KYDFSGNLDFVKFFKLVQDAGLYAIIRIGP 93 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~t-yv~Wn----~hEp~~G-----~~df~g~~dl~~fl~la~~~gL~Vilr~GP 93 (810)
+-+.|.+.|.-++++|+++|-+ +|+=+ .|--..- .-.|.+..+|.+|++.|+++||.||+-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3455889999999999999976 44311 1111110 113567889999999999999999987544
No 114
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.74 E-value=33 Score=36.88 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=50.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcce--eccCc--hhHHHHHHHHHHcCCEEEEecCccc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKY--DFSGN--LDFVKFFKLVQDAGLYAIIRIGPYV 95 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~--df~g~--~dl~~fl~la~~~gL~Vilr~GPyi 95 (810)
..+..++.++.+++.||-.=.+.+-+.+.+. .+.| +|+.. -|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6677789999999999986666665554443 3556 55422 3899999999999999999988877
No 115
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=56.70 E-value=9.7 Score=32.18 Aligned_cols=23 Identities=48% Similarity=0.827 Sum_probs=17.6
Q ss_pred eeEeCCcceEEEEEECCEEEEEE
Q 046585 471 TLRVSTKGHGLHAYVNGQLIGTQ 493 (810)
Q Consensus 471 ~L~v~~~~D~a~vfvng~~~G~~ 493 (810)
.|.|.+.=..|.|||||+++|..
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~t 25 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTT 25 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccC
Confidence 45666655678999999999943
No 116
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=56.48 E-value=21 Score=42.01 Aligned_cols=113 Identities=15% Similarity=0.204 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcCCCcC---cceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVHEPQR---RKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~---G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
.++++++.||++|+++-+.-|-|+-.=|.- +.-+-.|..--..+|+...++||..++-.= =|+ +|.||-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-----HwD---lPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-----HWD---LPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-----cCC---CCHHHH
Confidence 578999999999999999999999777752 456777777888889999999998664420 244 788887
Q ss_pred c-CCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEc
Q 046585 110 N-TPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQ 155 (810)
Q Consensus 110 ~-~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Q 155 (810)
+ +-+-.-+..=..|+++++--|+++..++| -+..=|...|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 44432222234677778778888888888 44444555555554
No 117
>PRK12677 xylose isomerase; Provisional
Probab=56.25 E-value=1e+02 Score=35.35 Aligned_cols=90 Identities=10% Similarity=0.114 Sum_probs=54.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceecc---CchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCce
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFS---GNLDFVKFFKLVQDAGLYAI-IRIGPYVCAEWNYGGFPMW 107 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~---g~~dl~~fl~la~~~gL~Vi-lr~GPyicaEw~~GG~P~W 107 (810)
-.+++++++++++|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-|.-|....+..|
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g----- 99 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG----- 99 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC-----
Confidence 347899999999999999883 1111112211 11358899999999999976 54432211112222
Q ss_pred eccCCCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 108 LHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 108 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
.+-+.|+..++...+.+.+.++.-+
T Consensus 100 -------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 -------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2445577777766666666555555
No 118
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=56.21 E-value=26 Score=39.59 Aligned_cols=135 Identities=13% Similarity=0.202 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHhcCCCcCeEEecCCC---CCc-----ccccCCC-CcccC-----------------cC-CCCCCCCC
Q 046585 171 GKKYIKWCANMAVAQNISEPWIMCQQSD---APE-----PMINTCN-GFYCD-----------------QF-TPNNPKSP 223 (810)
Q Consensus 171 ~~~y~~~l~~~~~~~g~~vp~~~~~~~~---~~~-----~~~~~~n-g~~~~-----------------~~-~~~~p~~P 223 (810)
-.+|++++++.+|+...+.|+.++-... ..+ ..++... ..|.. ++ +....++|
T Consensus 211 ~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kp 290 (374)
T PF02449_consen 211 VAEFFRWQADIIREYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKP 290 (374)
T ss_dssp HHHHHHHHHHHHHHHSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHHhCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCc
Confidence 4578899999999988887776543221 111 0111110 01111 01 12357899
Q ss_pred ccccccccccccccCCCCCCCCHHHHHHHHHHHHHcCCceeeeeeeeccCCCCCCCCCCCccccCCCCCCCCCCC-CCCC
Q 046585 224 KMWTENWTGWFKLWGGRDPQRTAEDLAFSVARFFQSGGVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYG-NLNQ 302 (810)
Q Consensus 224 ~~~~E~~~GWfd~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApL~E~G-~~~t 302 (810)
.+++|..+| -..|+.......+..+....-.-++.|+..+.|+=+ ..--+|.=.. ..+.|+-+| . .+
T Consensus 291 f~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~-~~ 358 (374)
T PF02449_consen 291 FWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGRE-PT 358 (374)
T ss_dssp EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS---B-
T ss_pred eEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCC-CC
Confidence 999999998 566766555555566666666678899998877765 3334442221 126777889 6 48
Q ss_pred hhHHHHHHHHHHHHh
Q 046585 303 PKWGHLKQLHEAIKQ 317 (810)
Q Consensus 303 ~Ky~~lr~l~~~i~~ 317 (810)
++|.+++++...|+.
T Consensus 359 ~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 359 RRYREVAQLGRELKK 373 (374)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhc
Confidence 999999999887753
No 119
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.20 E-value=43 Score=36.36 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=58.4
Q ss_pred cEEECCEEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceecc--CchhHHHHHHHHHHcCC
Q 046585 9 AIIIDGKRKVIIAGSIHYPRS-TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFS--GNLDFVKFFKLVQDAGL 85 (810)
Q Consensus 9 ~f~ldG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~--g~~dl~~fl~la~~~gL 85 (810)
.+.+.|.+++++.|=. -+ .++.-.+.-+++|++|+..++.|.+=+-.. .+.|. |...+..+-+.|++.||
T Consensus 20 ~~~~g~~~~~~iaGPC---sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~~~~~~~Gl 92 (266)
T PRK13398 20 DVVIGGEEKIIIAGPC---AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILKEVGDKYNL 92 (266)
T ss_pred CEEEcCCCEEEEEeCC---cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHHHHHHHcCC
Confidence 3666666888888832 22 567778889999999999999998873333 34666 57889999999999999
Q ss_pred EEEEec
Q 046585 86 YAIIRI 91 (810)
Q Consensus 86 ~Vilr~ 91 (810)
.++-.|
T Consensus 93 ~~~te~ 98 (266)
T PRK13398 93 PVVTEV 98 (266)
T ss_pred CEEEee
Confidence 998876
No 120
>PLN00196 alpha-amylase; Provisional
Probab=54.83 E-value=28 Score=40.40 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEEc-cccCc--CCCcCcc-ee-----ccCchhHHHHHHHHHHcCCEEEEec
Q 046585 35 PDLIRKAKEGGVDAIETY-IFWDV--HEPQRRK-YD-----FSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~ty-v~Wn~--hEp~~G~-~d-----f~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.+.|.-+|++|+++|-+. ++-+. |--.+.. |+ |....+|.++++.|++.||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888899999999874 44321 2222221 22 4445699999999999999999875
No 121
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=54.62 E-value=77 Score=36.45 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=56.0
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcC----cceeccCc---hhHHHHHHHHHHcCCEEEEecCccccc
Q 046585 25 HYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQR----RKYDFSGN---LDFVKFFKLVQDAGLYAIIRIGPYVCA 97 (810)
Q Consensus 25 Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~----G~~df~g~---~dl~~fl~la~~~gL~Vilr~GPyica 97 (810)
+|+.+..+.-.+.+++++++|++.+.+=--|....... |.+.-+-. .-|..+.+.+++.||+.=|+..|-+.+
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46667777778899999999999777655576442111 32221111 249999999999999998888886543
Q ss_pred ccC--CCCCCceeccCCC
Q 046585 98 EWN--YGGFPMWLHNTPG 113 (810)
Q Consensus 98 Ew~--~GG~P~WL~~~p~ 113 (810)
.=. +-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 211 2347999987554
No 122
>PRK03705 glycogen debranching enzyme; Provisional
Probab=54.02 E-value=22 Score=43.57 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEE-ccccCcCCCcC---c-----ce----------eccCc-----hhHHHHHHHHHHcCCEEEEec
Q 046585 37 LIRKAKEGGVDAIET-YIFWDVHEPQR---R-----KY----------DFSGN-----LDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 37 ~l~k~ka~G~N~V~t-yv~Wn~hEp~~---G-----~~----------df~g~-----~dl~~fl~la~~~gL~Vilr~ 91 (810)
.|.-+|++|+|+|+. +|+=...++.. | -| .|... .+|.++++.|++.||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488899999999996 45421111110 1 01 12222 589999999999999999874
No 123
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=53.87 E-value=11 Score=37.97 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=27.5
Q ss_pred CccEEEEECCeeceeccccccccCCCCCCCCCcCCcccCCcccCCCCCccceeeecCcccccCCCCcEEEEEEecc
Q 046585 629 MGKGHAWVNGRSIGRYWPTQIAETSGCDPHCNYRGTYKDDKCRTNCGNPSQRWYHVPRSFLNKNADNTLILFEEVG 704 (810)
Q Consensus 629 ~gKG~vwVNG~nlGRYW~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~PqqtlYhvP~~~Lk~~g~N~ivvfE~~g 704 (810)
-++=+|.||| ..+..+....+ -++|.+++. +-.|..+.--|-||+.+|+ +|.|+|.|=-..|
T Consensus 92 ~~~~~V~vNg-~~~~~~~~~~~----~d~~~~r~g--------~~~G~~~~~~~~ipa~~L~-~G~Nti~lt~~~g 153 (167)
T PF14683_consen 92 GGRLQVSVNG-WSGPFPSAPFG----NDNAIYRSG--------IHRGNYRLYEFDIPASLLK-AGENTITLTVPSG 153 (167)
T ss_dssp T-EEEEEETT-EE---------------S--GGGT-----------S---EEEEEE-TTSS--SEEEEEEEEEE-S
T ss_pred CCCEEEEEcC-ccCCccccccC----CCCceeeCc--------eecccEEEEEEEEcHHHEE-eccEEEEEEEccC
Confidence 3566899999 77776632111 122333331 1123455556779999999 9999987644334
No 124
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.20 E-value=34 Score=37.69 Aligned_cols=68 Identities=16% Similarity=0.296 Sum_probs=51.2
Q ss_pred CCCCcccHHHHHHHHHHcCCC--EEEEccccCcCCCcCcceeccCc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 046585 27 PRSTPEMWPDLIRKAKEGGVD--AIETYIFWDVHEPQRRKYDFSGN--LDFVKFFKLVQDAGLYAIIRIGPYVCA 97 (810)
Q Consensus 27 ~r~~~~~W~~~l~k~ka~G~N--~V~tyv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~gL~Vilr~GPyica 97 (810)
.....+.-++.++++++.|+. +|-+=+.|- ..-|.|.|.-. -|..++++..++.|+++++..=|+|..
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 346777789999999999965 555544452 34566666532 389999999999999999998888853
No 125
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.93 E-value=40 Score=28.03 Aligned_cols=45 Identities=33% Similarity=0.475 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
..++.++++|+.|+++|.+ .-|.. +. ...++.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~~------~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHGN------LF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCCc------cc---CHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999998 55552 22 4568889999999988743
No 126
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=52.34 E-value=31 Score=43.41 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=45.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-ccccCcCCCcCcc---e----------eccCchhHHHHHHHHHHcCCEEEEecCc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIET-YIFWDVHEPQRRK---Y----------DFSGNLDFVKFFKLVQDAGLYAIIRIGP 93 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~t-yv~Wn~hEp~~G~---~----------df~g~~dl~~fl~la~~~gL~Vilr~GP 93 (810)
+-+.|.+.|.-++++|+|+|-. +|+ +..+|. | .|.+..+|.+|++.|+++||.|||-.=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4456889999999999999986 343 222221 1 2457789999999999999999987654
No 127
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=51.46 E-value=30 Score=46.55 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-ccccCcCCCcCcc---e----------eccCchhHHHHHHHHHHcCCEEEEecCc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIET-YIFWDVHEPQRRK---Y----------DFSGNLDFVKFFKLVQDAGLYAIIRIGP 93 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~t-yv~Wn~hEp~~G~---~----------df~g~~dl~~fl~la~~~gL~Vilr~GP 93 (810)
+-+.|.+.|.-+|++|+|+|-+ .|| +..+|. | .|.+..+|.+|++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4466899999999999999987 333 222221 2 2567789999999999999999987644
No 128
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=51.37 E-value=3.8 Score=48.92 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=51.6
Q ss_pred ecCCCCeEEEEeeeecCCCCCCCCCCCcCcccCCchHHHHHhhcCCCCCcEEEecCCCc
Q 046585 733 RCQGHRKISEIQFASFGDPLGTCGSFSVGNHQADQTVSVVEKLCLGKPSCSIEVSQSTF 791 (810)
Q Consensus 733 ~C~~g~~i~~I~~A~yGr~~~~C~~~~~~~C~~~~s~~~v~~~C~Gk~~C~v~~~~~~F 791 (810)
.|.++..+..|..|.||..+++|+++..++|.++.+.-.+.+.|..+..|+|..-.+.+
T Consensus 331 ~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck 389 (649)
T KOG0496|consen 331 YCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCK 389 (649)
T ss_pred hcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhc
Confidence 35567778888999999999999999989999999999999999999999999865544
No 129
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=51.11 E-value=1.1e+02 Score=30.58 Aligned_cols=104 Identities=12% Similarity=0.079 Sum_probs=63.9
Q ss_pred ccHHHHHHHHHHcCCCEEEEccc--cCcCCC----cCcceeccCchhHHHHHHHHHHcCCEEE-EecCcccccccCCCCC
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIF--WDVHEP----QRRKYDFSGNLDFVKFFKLVQDAGLYAI-IRIGPYVCAEWNYGGF 104 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~--Wn~hEp----~~G~~df~g~~dl~~fl~la~~~gL~Vi-lr~GPyicaEw~~GG~ 104 (810)
...++..+.+++.|+..+....+ |..... .+.. .-.....+.+.+++|++.|...+ +.+|.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------- 94 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------- 94 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT-----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc-----------
Confidence 34567778889999997775444 433211 1111 11123488999999999999865 55542
Q ss_pred CceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccccccc
Q 046585 105 PMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNI 163 (810)
Q Consensus 105 P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~ 163 (810)
|-. ........-.+.+.+.+++|+++.+++. |.+.+||..+..
T Consensus 95 --~~~-----~~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 --YPS-----GPEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp --ESS-----STTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred --ccc-----ccCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 100 0112334667778888889999888542 456789988763
No 130
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.24 E-value=76 Score=35.80 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=45.5
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEccc----cCcCC----------------------------CcCcceeccCchhHHHH
Q 046585 29 STPEMWPDLIRKAKEGGVDAIETYIF----WDVHE----------------------------PQRRKYDFSGNLDFVKF 76 (810)
Q Consensus 29 ~~~~~W~~~l~k~ka~G~N~V~tyv~----Wn~hE----------------------------p~~G~~df~g~~dl~~f 76 (810)
.+.+..++.|..|...++|+...++- |.+-- +..|.|.- .|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHH
Confidence 36888899999999999999998763 43211 11234443 499999
Q ss_pred HHHHHHcCCEEEEec
Q 046585 77 FKLVQDAGLYAIIRI 91 (810)
Q Consensus 77 l~la~~~gL~Vilr~ 91 (810)
++.|++.|+.||-.+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999664
No 131
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=50.19 E-value=30 Score=43.77 Aligned_cols=21 Identities=14% Similarity=0.479 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 046585 71 LDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 71 ~dl~~fl~la~~~gL~Vilr~ 91 (810)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999864
No 132
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=49.58 E-value=28 Score=38.57 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=49.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCc--ceeccCch--hHHHHHHHHHHcCCEEEEecCccc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRR--KYDFSGNL--DFVKFFKLVQDAGLYAIIRIGPYV 95 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G--~~df~g~~--dl~~fl~la~~~gL~Vilr~GPyi 95 (810)
..+.-++.++++++.||-.=.+.+-|.+.. ..+ .|+|+-.+ |..++++..++.|++|++..=|+|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 555668899999999888765555554443 244 77776444 899999999999999998876776
No 133
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=49.36 E-value=82 Score=33.01 Aligned_cols=91 Identities=10% Similarity=0.090 Sum_probs=66.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceecc-CchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcee
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFS-GNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWL 108 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL 108 (810)
.+.+++..++.++++|+-.+-+|....- ....|..+ |..|=..-+.+|+++|+ .+| -|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~g-----------s~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PPG-----------TIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CCC-----------CEEEE
Confidence 6789999999999999999999988765 23333333 77899999999999998 333 33344
Q ss_pred ccCCCcccccCChhHHHHHHHHHHHHHHHHHhcc
Q 046585 109 HNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEAN 142 (810)
Q Consensus 109 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~ 142 (810)
.-+.+. .+..+...+..|++.+.+.|....
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~g 141 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEAG 141 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhcC
Confidence 322221 334477889999999999888543
No 134
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=48.70 E-value=87 Score=33.33 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=56.5
Q ss_pred Ccceecc-CchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 046585 62 RRKYDFS-GNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKE 140 (810)
Q Consensus 62 ~G~~df~-g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 140 (810)
.|...+. +..++..+++.|++.|++|++..| .|..+.+- .+ ..++. .-+++.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~~~-~~---------~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPEFT-AA---------LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCcch-hh---------hcCHH---HHHHHHHHHHHHHHH
Confidence 4666664 345788999999999999999986 12211110 01 12333 345788889999987
Q ss_pred ccccccCCCcEEEEcccccccccccccCchhHHHHHHHHHHHHhcC
Q 046585 141 ANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMAVAQN 186 (810)
Q Consensus 141 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 186 (810)
+.+ =++.|+=|+.... ...=..+++.|++.+++.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 654 2456666765320 0112345666666665544
No 135
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=48.43 E-value=95 Score=34.19 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=43.9
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccc----cCcC-CCc--CcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIF----WDVH-EPQ--RRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~----Wn~h-Ep~--~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
+.+.-++.|+.|...|+|.+..|+- +.-+ |-. +|.|.= .++.++++.|++.||.||-..
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 4577799999999999999998752 3222 111 344433 499999999999999998654
No 136
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=48.09 E-value=30 Score=44.76 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 046585 71 LDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 71 ~dl~~fl~la~~~gL~Vilr~ 91 (810)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999875
No 137
>PRK09267 flavodoxin FldA; Validated
Probab=47.94 E-value=1.3e+02 Score=29.73 Aligned_cols=119 Identities=11% Similarity=0.118 Sum_probs=67.1
Q ss_pred ECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEe-
Q 046585 12 IDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR- 90 (810)
Q Consensus 12 ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr- 90 (810)
+..-..++++...|....++..|.+-|.+++...++-..+.+| .......-.-.| ..-+..+.+++++.|..++-.
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~vg~~ 120 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYF--CDAMGTLYDIVEPRGATIVGHW 120 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHH--HHHHHHHHHHHHHCCCEEECcc
Confidence 3445678999999987888899999999888777776667666 222111100112 224566677788889765522
Q ss_pred -cCcccccccCC--CCCCceeccCCCcccccCChhHH-HHHHHHHHHHHHHH
Q 046585 91 -IGPYVCAEWNY--GGFPMWLHNTPGIQLRTNNDIFK-NEMQVFTTKIVNMC 138 (810)
Q Consensus 91 -~GPyicaEw~~--GG~P~WL~~~p~~~~R~~d~~y~-~~~~~~~~~l~~~~ 138 (810)
...|..-+-.. +|.+.=+.-++ .+++.+. +++++|.++|.+.+
T Consensus 121 ~~~gy~~~~~~~~~~~~~~g~~~d~-----~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 121 PTDGYTFEASKAVDDGKFVGLALDE-----DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCCCccccccceeeCCEEEEEEecC-----CCchhhhHHHHHHHHHHHHHHh
Confidence 22233222110 11110000011 1234454 88899999887654
No 138
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=47.49 E-value=33 Score=38.42 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=55.8
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCch--hH--HHHHHHHHHcCCEEEEecCcccc
Q 046585 24 IHYPRS---TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNL--DF--VKFFKLVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 24 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~--dl--~~fl~la~~~gL~Vilr~GPyic 96 (810)
+|..|. ..+.-++.++++++.||..=.+.+-+.++.. .+.|+|...+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 5667789999999999987666554444432 4677776543 77 99999999999999999989987
Q ss_pred cc
Q 046585 97 AE 98 (810)
Q Consensus 97 aE 98 (810)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 139
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=47.44 E-value=35 Score=37.46 Aligned_cols=59 Identities=22% Similarity=0.382 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccc---cCcCCCcCcce--------eccCchhHHHHHHHHHHcCCEEEEec
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIF---WDVHEPQRRKY--------DFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~---Wn~hEp~~G~~--------df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.+..-.++++.+|..|+|++-+=+- =++.=|....+ .|- |+..||+.|+|.||++|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 4455688999999999999875221 11111111111 233 99999999999999999996
No 140
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.31 E-value=35 Score=37.86 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=49.1
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCC-----cCcceeccCch--hHHHHHHHHHHcCCEEEEecCcccc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEP-----QRRKYDFSGNL--DFVKFFKLVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp-----~~G~~df~g~~--dl~~fl~la~~~gL~Vilr~GPyic 96 (810)
..+..++.++++++.||-.=.+.+-+.++.. .-|.|+|+-.+ |..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566789999999999876655554333331 23567665333 8999999999999999998877764
No 141
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=47.19 E-value=33 Score=36.95 Aligned_cols=48 Identities=25% Similarity=0.236 Sum_probs=35.6
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceecc-CchhHHHHHHHHHHcCCEEEEecC
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDFS-GNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
..++|++|++.|-+ +|-|.+. .|. .+..+.+=++.|.++||.+|++.|
T Consensus 79 ~~mLkd~G~~~vii----GHSERR~---~f~Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII----GHSERRQ---YFGETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe----CcccccC---ccCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 56799999999999 7777664 233 233444445559999999999987
No 142
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=47.06 E-value=50 Score=37.10 Aligned_cols=76 Identities=24% Similarity=0.393 Sum_probs=57.8
Q ss_pred cEEECCEEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccC--chhHHHHHHHHHHcCC
Q 046585 9 AIIIDGKRKVIIAGSIHYPRS-TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSG--NLDFVKFFKLVQDAGL 85 (810)
Q Consensus 9 ~f~ldG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g--~~dl~~fl~la~~~gL 85 (810)
.+.+.|.++.++.| +=-+ .++.-.+.-+.+|++|.+.++.|+|= |+---|.|.| ..-|..+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHHHHHHHcCC
Confidence 36677778888888 2233 56677788888999999999999985 4444467775 5677777788999999
Q ss_pred EEEEec
Q 046585 86 YAIIRI 91 (810)
Q Consensus 86 ~Vilr~ 91 (810)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 998876
No 143
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=46.57 E-value=39 Score=35.26 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
..++|++|++.|-+ +|-|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 45699999999999 888887 5444 68899999999999999987
No 144
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=45.67 E-value=71 Score=34.87 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=66.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceecc---CchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFS---GNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPM 106 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~---g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~ 106 (810)
.-+.-++-+.-+.++|+.-|-+=.-|...+ ....+||+ ...||.++++-|++.|..|+|+- -|..||-..
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhhH
Confidence 456678889999999999999988888722 23466775 45699999999999998888874 233332111
Q ss_pred eecc-------------CCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcE
Q 046585 107 WLHN-------------TPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPI 151 (810)
Q Consensus 107 WL~~-------------~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpI 151 (810)
=|.+ ..++|+=.-+. --+.+-+|+.+|++.-++|.|+..=+|++
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 1111 11111100000 11456678899999999888765544443
No 145
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=45.29 E-value=2.1e+02 Score=31.25 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=79.2
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
.-+.-+-+|+.+|.-+. .|++|- +.-+-|+.++.+|.+.|++|+|.. |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 34566889999998887 999963 233467788999999999999875 333
Q ss_pred cCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCchhHHHHHHHHHHHHhcCCCc
Q 046585 110 NTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMAVAQNISE 189 (810)
Q Consensus 110 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 189 (810)
. |-. ..+++ .++..+. | +..--.|..+-|.||-=.-...-...-.+|+...|.+++++|.++
T Consensus 111 d---------d~~--~~~~~---til~ay~--~--~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D---------DIH--DAVEK---TILSAYL--P--YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c---------chh--hhHHH---HHHHHHh--c--cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 111 22222 3334444 2 122247889999999732111011234679999999999999999
Q ss_pred CeEEecC
Q 046585 190 PWIMCQQ 196 (810)
Q Consensus 190 p~~~~~~ 196 (810)
|+.+.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9887765
No 146
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=45.25 E-value=1.1e+02 Score=34.42 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=56.2
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCch--hHHHHHHHHHHcCCEEEEecCcccc
Q 046585 24 IHYPRS---TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNL--DFVKFFKLVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 24 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~--dl~~fl~la~~~gL~Vilr~GPyic 96 (810)
+|..|. ..+..++.++++++.+|-.=.+++-|.++. .-+.|.|...+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 555664 667788999999999998766666665554 34677776543 8899999999999999998889887
No 147
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=45.14 E-value=1.5e+02 Score=31.16 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI 88 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi 88 (810)
++.++.|+++|++++.+- |=|| ||| |..-|.+.++.+++.|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~-G~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDY-GEEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----ccc-chHHHHHHHHHHHHCCCCEe
Confidence 567899999999999881 2444 444 34467788888888888765
No 148
>PRK09875 putative hydrolase; Provisional
Probab=44.93 E-value=1.1e+02 Score=33.64 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 046585 31 PEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 31 ~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 110 (810)
.+.-...|+.+|++|.+||-= ..+ ..-.+|...+.+++++-|+.||..+|-|.-. -+|.|+..
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~-----~~p~~~~~ 95 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMRETGINVVACTGYYQDA-----FFPEHVAT 95 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHHHhCCcEEEcCcCCCCc-----cCCHHHhc
Confidence 344456788999999998832 222 1124699999999999999999999988522 25777763
No 149
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=44.82 E-value=26 Score=31.09 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=24.3
Q ss_pred cCCCcEEEEccccc-ccccccccC----c-hhHHHHHHHH---HHHHhcCCCcCeEE
Q 046585 146 SQGGPIILAQIENE-YGNIMEKYG----D-AGKKYIKWCA---NMAVAQNISEPWIM 193 (810)
Q Consensus 146 ~~gGpII~~QiENE-yg~~~~~~~----~-~~~~y~~~l~---~~~~~~g~~vp~~~ 193 (810)
++...|.+|+|-|| -+.....+. . ....|.+||+ +.+|+.+.+.|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 34458999999999 552210111 1 1234555555 45666788888743
No 150
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=44.79 E-value=1.5e+02 Score=31.13 Aligned_cols=45 Identities=18% Similarity=0.412 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI 88 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi 88 (810)
++.++.|+++|++++.+- |=|| |||. ..-|.+.++..++.|+..+
T Consensus 67 ~~~~~~L~~~G~d~~tla---NNH~-----fD~G-~~gl~~t~~~l~~~~i~~~ 111 (239)
T cd07381 67 PEVADALKAAGFDVVSLA---NNHT-----LDYG-EEGLLDTLDALDEAGIAHA 111 (239)
T ss_pred HHHHHHHHHhCCCEEEcc---cccc-----cccc-hHHHHHHHHHHHHcCCcee
Confidence 567889999999999981 2453 4443 3466677888888898764
No 151
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=44.75 E-value=57 Score=35.96 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=59.5
Q ss_pred HHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCC--EEEEecCc--------ccccccCCCCCCc
Q 046585 37 LIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGL--YAIIRIGP--------YVCAEWNYGGFPM 106 (810)
Q Consensus 37 ~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL--~Vilr~GP--------yicaEw~~GG~P~ 106 (810)
+|++-.++|.+.+-|- =.||.+ .+.+|++.|++.|+ .|+...-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ----------~~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQ----------FFFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecc----------cccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 5666667899888883 245655 88999999999994 45665555 34 6777788999
Q ss_pred eeccC-CCcccccCC-hhHHHHHHHHHHHHHHHHHh
Q 046585 107 WLHNT-PGIQLRTNN-DIFKNEMQVFTTKIVNMCKE 140 (810)
Q Consensus 107 WL~~~-p~~~~R~~d-~~y~~~~~~~~~~l~~~~~~ 140 (810)
|+.+. .. . .+| ....++--++..++++.+.+
T Consensus 234 ~l~~~l~~--~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFDG--L-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99762 11 1 133 33556666777778777774
No 152
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=44.39 E-value=38 Score=37.87 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=53.9
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCch--hHHHHHHHHHHcCCEEEEecCcccccc
Q 046585 24 IHYPRS---TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNL--DFVKFFKLVQDAGLYAIIRIGPYVCAE 98 (810)
Q Consensus 24 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~--dl~~fl~la~~~gL~Vilr~GPyicaE 98 (810)
+|..|. ..+.-++.++++++.||..=.+.+-+.+. ...+.|+|+-.+ |..++++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 344553 45566889999999999866665443322 345667776433 899999999999999999998998753
No 153
>PLN02877 alpha-amylase/limit dextrinase
Probab=43.19 E-value=46 Score=42.37 Aligned_cols=21 Identities=19% Similarity=0.551 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 046585 71 LDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 71 ~dl~~fl~la~~~gL~Vilr~ 91 (810)
.++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999874
No 154
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=43.01 E-value=75 Score=38.66 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=76.3
Q ss_pred CCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 13 DGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 13 dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
++++-+.+++..|+++.+.+.=.++|++-.++|..-+-|-.++ |.+ .+.+|++.+++.++.+|...-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~f----------d~~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVY----------DEE---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccC----------CHH---HHHHHHHHHhcCCCCEEEEee
Confidence 3345688999999887655544566777778999999995443 434 788899888888888888777
Q ss_pred ccc--------ccccCCCCCCceeccC-CCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 93 PYV--------CAEWNYGGFPMWLHNT-PGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 93 Pyi--------caEw~~GG~P~WL~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
|-. ..+|..-=+|.|+.+. .. .. +...++++-.++..++++.++
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 733 2335555578888751 11 11 224667777777777777776
No 155
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.29 E-value=55 Score=36.26 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=47.3
Q ss_pred cccHHHHHHHHHHcCCCEEEEccccCcCCC---cCcceeccCc--hhHHHHHHHHHHcCCEEEEecCcccc
Q 046585 31 PEMWPDLIRKAKEGGVDAIETYIFWDVHEP---QRRKYDFSGN--LDFVKFFKLVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 31 ~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp---~~G~~df~g~--~dl~~fl~la~~~gL~Vilr~GPyic 96 (810)
.+.-++.++++++.+|-.=.+.+-+.+..- ....|+|.-. -|..++++..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345678899999999987666554332221 1234666533 38999999999999999999888874
No 156
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=41.81 E-value=57 Score=34.94 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=39.7
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
..++|++|++.|-+ +|-|.+.- |. +.+.++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR~~-f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII----GHSERRQY-FG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe----CcccccCc-CC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 45699999999999 77777642 22 2466888889999999999999987
No 157
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=41.78 E-value=44 Score=37.04 Aligned_cols=73 Identities=8% Similarity=0.126 Sum_probs=52.9
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 046585 24 IHYPRS---TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGN--LDFVKFFKLVQDAGLYAIIRIGPYVCA 97 (810)
Q Consensus 24 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~gL~Vilr~GPyica 97 (810)
+|..|. ..+..++.++++++.+|-.=.+.+-+.+.. ..+.|+|+.. -|..++++..++.|++|++..=|+|..
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 355554 556678999999999988655554432222 3466777543 389999999999999999988888853
No 158
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=41.58 E-value=26 Score=38.54 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCE--EE-Eec
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLY--AI-IRI 91 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~--Vi-lr~ 91 (810)
-.|++.+.+++..|+ +|++.-+--..|..|+.|. |+.+.+++|...||- +| |||
T Consensus 443 ~~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 443 LTHESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred CcHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 358999999999998 6788888889999999986 899999999999986 44 776
No 159
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=41.01 E-value=82 Score=35.46 Aligned_cols=111 Identities=17% Similarity=0.361 Sum_probs=66.5
Q ss_pred EEEEccccCcCC---CcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCcccccCChhHH
Q 046585 48 AIETYIFWDVHE---PQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFK 124 (810)
Q Consensus 48 ~V~tyv~Wn~hE---p~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~ 124 (810)
.|.+.|+|+++- |.+ ..++.|+++|+.|+-- |.=||+ +-+.|+.. .+. +++
T Consensus 32 yvD~fvywsh~~~~iPp~------------~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~----lL~-~~~--- 85 (339)
T cd06547 32 YVDTFVYFSHSAVTIPPA------------DWINAAHRNGVPVLGT----FIFEWT--GQVEWLED----FLK-KDE--- 85 (339)
T ss_pred hhheeecccCccccCCCc------------HHHHHHHhcCCeEEEE----EEecCC--CchHHHHH----Hhc-cCc---
Confidence 477788888853 333 6689999999999742 233565 33455542 011 111
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCcEEEEccccccc-ccccccCchhHHHHHHHHHHHHhc--CCCcCeEE
Q 046585 125 NEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYG-NIMEKYGDAGKKYIKWCANMAVAQ--NISEPWIM 193 (810)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg-~~~~~~~~~~~~y~~~l~~~~~~~--g~~vp~~~ 193 (810)
+...++.++|++..+.+.+ + | +.+-+||..+ .. ....=.++++.|++.+++. +..|-|+.
T Consensus 86 ~~~~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~---~~~~l~~F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 86 DGSFPVADKLVEVAKYYGF---D-G--WLINIETELGDAE---KAKRLIAFLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred ccchHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH---HHHHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 2236677888888886554 2 3 7778888873 21 0123356788888888775 23344553
No 160
>PLN03059 beta-galactosidase; Provisional
Probab=40.81 E-value=52 Score=41.16 Aligned_cols=40 Identities=30% Similarity=0.578 Sum_probs=30.8
Q ss_pred eEEEEEeecCCCCccccceeEeCCcceEEEEEECCEEEEEEe
Q 046585 453 YLWYMTRVDTKDMSLENATLRVSTKGHGLHAYVNGQLIGTQF 494 (810)
Q Consensus 453 yl~Y~t~i~~~~~~~~~~~L~v~~~~D~a~vfvng~~~G~~~ 494 (810)
..||+++|+.+... +...|.+.+..= .+|||||+-+|.--
T Consensus 620 ~twYK~~Fd~p~g~-Dpv~LDm~gmGK-G~aWVNG~nIGRYW 659 (840)
T PLN03059 620 LTWYKTTFDAPGGN-DPLALDMSSMGK-GQIWINGQSIGRHW 659 (840)
T ss_pred ceEEEEEEeCCCCC-CCEEEecccCCC-eeEEECCccccccc
Confidence 89999999886533 346787777654 48899999999754
No 161
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=39.92 E-value=1.1e+02 Score=33.14 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=68.2
Q ss_pred eEEEEEEecCCCCCccc----HHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEE--EEe
Q 046585 17 KVIIAGSIHYPRSTPEM----WPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYA--IIR 90 (810)
Q Consensus 17 ~~~~sG~~Hy~r~~~~~----W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~V--ilr 90 (810)
.+-+++..|+.+.+... =.++|++-.++|.+.+-|- =.||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ----------~~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQ----------LFFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeec----------cccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 36788999887643322 2355667778999998883 345555 8889999999997664 444
Q ss_pred cCccc-------ccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 91 IGPYV-------CAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 91 ~GPyi-------caEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
.-|-. .++|..-.+|.|+.+.=. +...+.....++--++..+++..+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44422 223666678888875100 0111223455666677777777776
No 162
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=39.08 E-value=54 Score=36.67 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=51.7
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCch--hHHHHHHHHHHcCCEEEEecCcccc
Q 046585 24 IHYPRS---TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNL--DFVKFFKLVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 24 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~--dl~~fl~la~~~gL~Vilr~GPyic 96 (810)
+|..|. ..+..++.++++++.||-.=.+.+-+.+.. .-+.|+|.-.+ |..++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455553 556678999999999987655544433332 34557665433 7899999999999999998878875
No 163
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=38.98 E-value=97 Score=34.08 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=46.8
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEccc----cCcCCC----------------cCcceeccCchhHHHHHHHHHHcCCEEE
Q 046585 29 STPEMWPDLIRKAKEGGVDAIETYIF----WDVHEP----------------QRRKYDFSGNLDFVKFFKLVQDAGLYAI 88 (810)
Q Consensus 29 ~~~~~W~~~l~k~ka~G~N~V~tyv~----Wn~hEp----------------~~G~~df~g~~dl~~fl~la~~~gL~Vi 88 (810)
.+.+..++.|+.|...++|++..++- |.+--+ ..|.|.-+ |+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEE
Confidence 36788899999999999999999876 754311 12344444 99999999999999998
Q ss_pred Eec
Q 046585 89 IRI 91 (810)
Q Consensus 89 lr~ 91 (810)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 654
No 164
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.82 E-value=1.1e+02 Score=34.04 Aligned_cols=60 Identities=8% Similarity=0.163 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEcc----ccCcCC---Cc---Cc----ceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 29 STPEMWPDLIRKAKEGGVDAIETYI----FWDVHE---PQ---RR----KYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 29 ~~~~~W~~~l~k~ka~G~N~V~tyv----~Wn~hE---p~---~G----~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.+.+..++.|+.|...++|+...++ -|.+-- |+ .| .|. ..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4688999999999999999999987 375421 11 22 233 3499999999999999998654
No 165
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.65 E-value=2.1e+02 Score=30.86 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCceeccCC
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYA--IIRIGPYVCAEWNYGGFPMWLHNTP 112 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~V--ilr~GPyicaEw~~GG~P~WL~~~p 112 (810)
.+.++.+++.|+++|++++-. |+--..+.....+.++|.+.++++++.+ +.--+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~----P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKS----PRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecC----ccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 568999999999999996531 1111111112236778888899998863 44445553
Q ss_pred CcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 113 GIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 113 ~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
+.+-+.|+.-+++..+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334577777776666666665555
No 166
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=38.25 E-value=27 Score=36.26 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=14.2
Q ss_pred ccEEEEECCeeceecc
Q 046585 630 GKGHAWVNGRSIGRYW 645 (810)
Q Consensus 630 gKG~vwVNG~nlGRYW 645 (810)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 5699999999999973
No 167
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=38.25 E-value=1.6e+02 Score=33.19 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=51.5
Q ss_pred CcEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccc----cCcCCCc------Ccceecc---CchhHH
Q 046585 8 NAIIIDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIF----WDVHEPQ------RRKYDFS---GNLDFV 74 (810)
Q Consensus 8 ~~f~ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~----Wn~hEp~------~G~~df~---g~~dl~ 74 (810)
|+|+||=-| |+ .+.+..++.|+.|....+|+...++- |.+--+. .|.|.=. -..|+.
T Consensus 4 RG~mlDvaR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~ 73 (348)
T cd06562 4 RGLLLDTSR--------HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVK 73 (348)
T ss_pred cceeeeccc--------cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHH
Confidence 555555433 55 35788899999999999999998763 5543221 2322111 134999
Q ss_pred HHHHHHHHcCCEEEEec
Q 046585 75 KFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 75 ~fl~la~~~gL~Vilr~ 91 (810)
++++.|++.|+.||-.+
T Consensus 74 eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 74 EIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHcCCEEEEec
Confidence 99999999999998664
No 168
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.90 E-value=65 Score=35.26 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=47.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCC--------CcCcceeccCc--hhHHHHHHHHHHcCCEEEEecCcc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHE--------PQRRKYDFSGN--LDFVKFFKLVQDAGLYAIIRIGPY 94 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hE--------p~~G~~df~g~--~dl~~fl~la~~~gL~Vilr~GPy 94 (810)
+.+.-++.++++++.||-.=.+++-..+|. ..-+.|+|+-. -|..++++..++.|++|++..=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 556668899999999998766665433332 12356777643 399999999999999999887554
No 169
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.82 E-value=45 Score=38.44 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=47.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCch--hHHHHHHHHHHcCCEEEEecCcccccccC
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNL--DFVKFFKLVQDAGLYAIIRIGPYVCAEWN 100 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~--dl~~fl~la~~~gL~Vilr~GPyicaEw~ 100 (810)
..+...+.++.+++.|+-.=.+.+-..+.. ..+.|.|+..+ |..++++.+++.|++|++..-|+|.-+-.
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 455668899999999998766655433322 44455555332 89999999999999999998888865543
No 170
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=37.75 E-value=4.7e+02 Score=30.42 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCCEEEEccc----cCcCCCcCcceeccCchhHHHHHHHHHHcCCE--EEEecCcccccccCCCCCCcee
Q 046585 35 PDLIRKAKEGGVDAIETYIF----WDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLY--AIIRIGPYVCAEWNYGGFPMWL 108 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~----Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~--Vilr~GPyicaEw~~GG~P~WL 108 (810)
...++.+.+.|+|++++++- |..-+..+ .++++|.++++++||. .++--+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 34678899999999999873 65444443 3888999999999885 245567774
Q ss_pred ccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcc
Q 046585 109 HNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI 156 (810)
Q Consensus 109 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 156 (810)
+.+-+.|+..++...+.+.+-+.+-+ .+ |-+.+-++-
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~--~L----Ga~~VV~HP 239 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE--QL----GIKLYNFHP 239 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECC
Confidence 23444566666665555555445444 22 345555554
No 171
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=37.48 E-value=78 Score=30.76 Aligned_cols=92 Identities=9% Similarity=0.123 Sum_probs=47.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceecc-CchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcee
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFS-GNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWL 108 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL 108 (810)
.+.+.+..++.|+++|+..+-+|.....+. ......++ |..|=..-+..|+++|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 478899999999999999999998872221 11111221 567888999999999982 2 234444
Q ss_pred ccCCCcccccCChhHHHHHHHHHHHHHHHHHhc
Q 046585 109 HNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEA 141 (810)
Q Consensus 109 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~ 141 (810)
--+- -..+..+...+..|++.+.+.|..+
T Consensus 100 avD~----d~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 100 AVDY----DATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp E--T----S-B-HH-------HHHHHHHHHGGG
T ss_pred Eeec----CCCchhhhhHHHHHHHHHHHHHhhC
Confidence 3221 1256778888888999888888843
No 172
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=37.15 E-value=46 Score=35.51 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcCCCcC----cceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVHEPQR----RKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~----G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.++|+++|+.+.+.+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 5567788999999999966 22222111 112111 1368889999999999999997
No 173
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=37.00 E-value=43 Score=36.17 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCCcceEEEEEeecCCCCcc----ccceeEeCCcceEEEEEECCEEE
Q 046585 448 GDGSDYLWYMTRVDTKDMSL----ENATLRVSTKGHGLHAYVNGQLI 490 (810)
Q Consensus 448 ~d~~Gyl~Y~t~i~~~~~~~----~~~~L~v~~~~D~a~vfvng~~~ 490 (810)
+|..|.+||+.++.++.+.. +..+|++.++|-.|.|+|||.-+
T Consensus 84 rdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~ 130 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDA 130 (297)
T ss_pred ccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceee
Confidence 46789999999998864331 45779999999999999998753
No 174
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=35.72 E-value=56 Score=35.39 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCEEEEccccC--cCCCcCcceeccCchhHHHHHHHHHHcCCEEE
Q 046585 35 PDLIRKAKEGGVDAIETYIFWD--VHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI 88 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn--~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi 88 (810)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|.
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~ 175 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVC 175 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEE
Confidence 6789999999999998865411 111111223444 66677889999999864
No 175
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=35.64 E-value=46 Score=37.47 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=44.4
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 28 RSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 28 r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
|.+...-.-..+.++++|.++|.+.|+|.-.++.+ -+-.-..+|.++.+.|+++||-+++.+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 55444434446789999999999999999553310 011123489999999999999999875
No 176
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=35.55 E-value=16 Score=32.07 Aligned_cols=38 Identities=21% Similarity=0.521 Sum_probs=27.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcC
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAG 84 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~g 84 (810)
....|-.-+|.+-. .||.|-.|||. +|.+||++|.|--
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkTp 57 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKTP 57 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcCC
Confidence 45678888777654 48999999999 9999999998743
No 177
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=35.27 E-value=97 Score=37.82 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=51.3
Q ss_pred HHHHHHHcCCCEEEE-ccc-----c--CcCCCcCccee---------ccCchhHHHHHHHHHHcCCEEEEecC-------
Q 046585 37 LIRKAKEGGVDAIET-YIF-----W--DVHEPQRRKYD---------FSGNLDFVKFFKLVQDAGLYAIIRIG------- 92 (810)
Q Consensus 37 ~l~k~ka~G~N~V~t-yv~-----W--n~hEp~~G~~d---------f~g~~dl~~fl~la~~~gL~Vilr~G------- 92 (810)
.++.++.+|+++|-+ .++ | ..-.-..|-|| |....|++++++.|++.||+||+-.=
T Consensus 79 ~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~g 158 (688)
T TIGR02455 79 LWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKG 158 (688)
T ss_pred HHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCC
Confidence 445688999999986 233 3 23233346666 33446999999999999999996543
Q ss_pred -cccccccCCCCCCcee
Q 046585 93 -PYVCAEWNYGGFPMWL 108 (810)
Q Consensus 93 -PyicaEw~~GG~P~WL 108 (810)
||.-||+..+-+|.|.
T Consensus 159 hdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 159 ADFRLAELAHGDYPGLY 175 (688)
T ss_pred cchHHHhhcCCCCCCce
Confidence 3777888887777776
No 178
>PRK14565 triosephosphate isomerase; Provisional
Probab=35.15 E-value=66 Score=34.36 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCEEEEccccCcCCCcCcceecc-CchhHHHHHHHHHHcCCEEEEecC
Q 046585 37 LIRKAKEGGVDAIETYIFWDVHEPQRRKYDFS-GNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 37 ~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
-.+++|++|++.|-+ +|-|.+. .|. .+..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~~vii----GHSERR~---~f~Etd~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL----GHSERRS---TFHETDSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE----CcccccC---cCCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 356799999999998 8877765 343 223333334889999999999998
No 179
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=34.96 E-value=51 Score=37.48 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=51.3
Q ss_pred CCCCCcccHHHHHHHHHHc-CCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 26 YPRSTPEMWPDLIRKAKEG-GVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 26 y~r~~~~~W~~~l~k~ka~-G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
|.-.|.+.|+-+|.-+.++ -=||+.+-|- |=+.|--++|+-. .|.+++++|+++||.||.-
T Consensus 177 ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 177 YDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred ecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 4446999999999999886 6789887543 7888888999877 9999999999999999854
No 180
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=34.87 E-value=71 Score=36.98 Aligned_cols=56 Identities=29% Similarity=0.368 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCEEEE-cccc---CcCCCcCcce-----eccCchhHHHHHHHHHHcCCEEEEec
Q 046585 36 DLIRKAKEGGVDAIET-YIFW---DVHEPQRRKY-----DFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 36 ~~l~k~ka~G~N~V~t-yv~W---n~hEp~~G~~-----df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
+.|.-+|++|+++|-+ .++= ..|.-..-.| .|.+..|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888899999999965 3331 1222111111 57778899999999999999999763
No 181
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=34.74 E-value=98 Score=31.59 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=53.3
Q ss_pred EEecCCCC-----CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccC---chhHHHHHHHHHHcCCEEEEecCc
Q 046585 22 GSIHYPRS-----TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSG---NLDFVKFFKLVQDAGLYAIIRIGP 93 (810)
Q Consensus 22 G~~Hy~r~-----~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g---~~dl~~fl~la~~~gL~Vilr~GP 93 (810)
|.+||+|. +.+..+.-|+.++..++.. ...|--.|..++.+.-+. ...+.+|++..+++|..+++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 88898864 3456677778887755432 111333343333322110 136789999999999999999988
Q ss_pred ccc----ccc---CCCCCCceeccC
Q 046585 94 YVC----AEW---NYGGFPMWLHNT 111 (810)
Q Consensus 94 yic----aEw---~~GG~P~WL~~~ 111 (810)
+-- +.. +...+|.|+-..
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCC
Confidence 521 111 145789999764
No 182
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=34.37 E-value=1.6e+02 Score=27.75 Aligned_cols=40 Identities=10% Similarity=0.315 Sum_probs=27.5
Q ss_pred eEEEEEeecCCCCccccceeEeCCcceEEEEEECCEEEEEEec
Q 046585 453 YLWYMTRVDTKDMSLENATLRVSTKGHGLHAYVNGQLIGTQFS 495 (810)
Q Consensus 453 yl~Y~t~i~~~~~~~~~~~L~v~~~~D~a~vfvng~~~G~~~~ 495 (810)
.+.++..|..+.++ ..++.+. ..|.+.+||||+.+-...+
T Consensus 47 ~~~~~G~~~~~~~G--~y~f~~~-~~d~~~l~idg~~vid~~~ 86 (145)
T PF07691_consen 47 SVRWTGYFKPPETG--TYTFSLT-SDDGARLWIDGKLVIDNWG 86 (145)
T ss_dssp EEEEEEEEEESSSE--EEEEEEE-ESSEEEEEETTEEEEECSC
T ss_pred EEEEEEEEecccCc--eEEEEEE-ecccEEEEECCEEEEcCCc
Confidence 45678888765443 2344444 6789999999999876553
No 183
>PLN02784 alpha-amylase
Probab=34.13 E-value=89 Score=39.33 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCEEEEccccCcCCC---cCcc-ee----ccCchhHHHHHHHHHHcCCEEEEec
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDVHEP---QRRK-YD----FSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~hEp---~~G~-~d----f~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.++|..++++|+++|-+.=+.....+ .+.. |+ |....+|.++++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46778889999999997432211111 1111 11 3445799999999999999999864
No 184
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=33.99 E-value=85 Score=31.56 Aligned_cols=60 Identities=27% Similarity=0.251 Sum_probs=31.1
Q ss_pred ceeEeCCcceEEEEEECCEEEEEEecccccccccccCCC--ceeeEEcccccccCCccEEEEEEEccC
Q 046585 470 ATLRVSTKGHGLHAYVNGQLIGTQFSRQATGQQMVTGDD--YSFGFDKAVSSLKKGVNVISLLSVTVG 535 (810)
Q Consensus 470 ~~L~v~~~~D~a~vfvng~~~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~g~~~L~ILven~G 535 (810)
..|.|... .+-.+||||+.||.-. ..|..+ .... .-.++++.-- |++|.|+|.|++-+..
T Consensus 6 A~l~isa~-g~Y~l~vNG~~V~~~~---l~P~~t-~y~~~~~Y~tyDVt~~-L~~G~N~iav~lg~gw 67 (172)
T PF08531_consen 6 ARLYISAL-GRYELYVNGERVGDGP---LAPGWT-DYDKRVYYQTYDVTPY-LRPGENVIAVWLGNGW 67 (172)
T ss_dssp -EEEEEEE-SEEEEEETTEEEEEE------------BTTEEEEEEEE-TTT---TTEEEEEEEEEE--
T ss_pred EEEEEEeC-eeEEEEECCEEeeCCc---cccccc-cCCCceEEEEEeChHH-hCCCCCEEEEEEeCCc
Confidence 45665543 3668999999999643 112111 0111 1134555544 8889999999997644
No 185
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.72 E-value=1.1e+02 Score=34.63 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.|..-|+.+++.|++.|..+...-.-....+.. -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~------~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGKI------VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhcccccccccc------CCHHHHHHHHHcCCEEEEEE
Confidence 488889999999999887654322222111221 23588999999999998664
No 186
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=33.34 E-value=1.5e+02 Score=34.53 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=53.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEE-ccccCcCCCc----Ccceec-----cCc-----hhHHHHHHHH-HHcCCEEEEecCc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIET-YIFWDVHEPQ----RRKYDF-----SGN-----LDFVKFFKLV-QDAGLYAIIRIGP 93 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~t-yv~Wn~hEp~----~G~~df-----~g~-----~dl~~fl~la-~~~gL~Vilr~GP 93 (810)
+-+.|+++|+.++++|.|+|.. ++----.... ..+..| ... .+|.+++..+ +++||.++.-.
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 4469999999999999999984 2211100000 111111 111 4999999888 47999976432
Q ss_pred ccccccCC-CCCCceeccCCCcccccCChhHHHH
Q 046585 94 YVCAEWNY-GGFPMWLHNTPGIQLRTNNDIFKNE 126 (810)
Q Consensus 94 yicaEw~~-GG~P~WL~~~p~~~~R~~d~~y~~~ 126 (810)
=|+- .-==.||..+|+.-.-..+.++++.
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~p 127 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLRP 127 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchhh
Confidence 0221 1124699999886544444455543
No 187
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.21 E-value=2.5e+02 Score=29.94 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=55.8
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCc-Cccee---c-cCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCC
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQ-RRKYD---F-SGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGF 104 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~-~G~~d---f-~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~ 104 (810)
.++.-+...+.+++.|+....+-. ..|.+. ++.-| . .....+.+.|++|++.|..+|.-+| .
T Consensus 55 ~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~-----------~ 121 (283)
T PRK13209 55 SREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG-----------Y 121 (283)
T ss_pred CHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC-----------c
Confidence 455556667778899998766411 112111 01000 0 0112577889999999999774322 1
Q ss_pred CceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEccccccc
Q 046585 105 PMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYG 161 (810)
Q Consensus 105 P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg 161 (810)
+.|.. ..++...+.+...++.|++..+++ | |-+.|||-.+
T Consensus 122 ~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 122 DVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred ccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 11211 122444455556677777777643 2 4566788643
No 188
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.84 E-value=92 Score=33.59 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceecc-CchhHHHHHHHHHHcCCEEEEecC
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDFS-GNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
..++|++|++.|-+ +|-|.+. .|. .+..+.+=++.|.++||.+||+.|
T Consensus 81 ~~mL~d~G~~~vii----GHSERR~---~~~E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI----GHSERRL---YFGETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE----Ccccccc---ccccchHHHHHHHHHHHHCCCeEEEEcC
Confidence 34599999999999 8887665 343 334566778899999999999987
No 189
>PTZ00333 triosephosphate isomerase; Provisional
Probab=32.83 E-value=96 Score=33.50 Aligned_cols=48 Identities=23% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceec-cCchhHHHHHHHHHHcCCEEEEecC
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDF-SGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df-~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
-.++|++|++.|-+ +|-|.+. .| +.+..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii----GHSERR~---~f~Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL----GHSERRQ---YFGETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE----CcccccC---cCCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 45699999999999 7777665 33 3456888889999999999999988
No 190
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=32.53 E-value=62 Score=34.57 Aligned_cols=48 Identities=23% Similarity=0.503 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE-EecCccccc
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI-IRIGPYVCA 97 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi-lr~GPyica 97 (810)
+...+.++++|++|+ -|+.+| +|.+ +.++.|++.|-..| |-+|||..+
T Consensus 113 ~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 113 DKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 445678899999999 677755 6766 67999999999977 999999865
No 191
>PLN02429 triosephosphate isomerase
Probab=32.51 E-value=75 Score=35.41 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHH----HHHcCCEEEEecC
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKL----VQDAGLYAIIRIG 92 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~l----a~~~gL~Vilr~G 92 (810)
.+++|++|++.|-+ +|-|.+. .|. ..++++.. |.++||.+|++.|
T Consensus 140 a~mLkd~Gv~~Vii----GHSERR~---~f~---Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVIL----GHSERRH---VIG---EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEe----CccccCC---CCC---cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 45699999999998 7777765 343 33445544 9999999999998
No 192
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=32.25 E-value=1.3e+02 Score=33.46 Aligned_cols=145 Identities=15% Similarity=0.228 Sum_probs=79.8
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCEEEEccc--cCcC---CC------------------------cCcceeccCchhHHH
Q 046585 25 HYPRSTPEMWPDLIRKAKEGGVDAIETYIF--WDVH---EP------------------------QRRKYDFSGNLDFVK 75 (810)
Q Consensus 25 Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~--Wn~h---Ep------------------------~~G~~df~g~~dl~~ 75 (810)
||+ +.+..++.|+.|...++|++..++- |.+- .| ..|.|. ..++.+
T Consensus 12 ~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~e 86 (326)
T cd06564 12 KYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKE 86 (326)
T ss_pred CCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHH
Confidence 554 6888899999999999999997653 3221 11 122332 349999
Q ss_pred HHHHHHHcCCEEEEecCcccccccCCCCC-CceeccCCCccccc---------CChhHHHHHHHHHHHHHHHHHhccccc
Q 046585 76 FFKLVQDAGLYAIIRIGPYVCAEWNYGGF-PMWLHNTPGIQLRT---------NNDIFKNEMQVFTTKIVNMCKEANLFA 145 (810)
Q Consensus 76 fl~la~~~gL~Vilr~GPyicaEw~~GG~-P~WL~~~p~~~~R~---------~d~~y~~~~~~~~~~l~~~~~~~~~~~ 145 (810)
+++.|++.|+.||-.+- .=|. =+|+...|++..+. -|+ =.+++-++++.|+..+. +++
T Consensus 87 iv~yA~~rgI~vIPEID--------~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~-~~~~t~~f~~~l~~E~~--~~f- 154 (326)
T cd06564 87 LIAYAKDRGVNIIPEID--------SPGHSLAFTKAMPELGLKNPFSKYDKDTLDI-SNPEAVKFVKALFDEYL--DGF- 154 (326)
T ss_pred HHHHHHHcCCeEeccCC--------CcHHHHHHHHhhHHhcCCCcccCCCcccccC-CCHHHHHHHHHHHHHHH--Hhc-
Confidence 99999999999986542 2111 23443344322221 011 11344555555555555 332
Q ss_pred cCCCcEEEEccc-ccccccccccCchhHHHHHHHHHHHHhcCCCc
Q 046585 146 SQGGPIILAQIE-NEYGNIMEKYGDAGKKYIKWCANMAVAQNISE 189 (810)
Q Consensus 146 ~~gGpII~~QiE-NEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 189 (810)
...++.| +|. -|+-... .....-..|++.+.+.+++.|..+
T Consensus 155 ~~~~~~~--HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk~~ 196 (326)
T cd06564 155 NPKSDTV--HIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGKTP 196 (326)
T ss_pred CCCCCEE--EeccccccccC-ccHHHHHHHHHHHHHHHHHcCCeE
Confidence 1112333 221 1221100 001123568899999999987653
No 193
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.67 E-value=93 Score=34.92 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=50.2
Q ss_pred ecCCCC---CcccHHHHHHHHHHcCCCEEEEcc----------ccCcCCCc---------CcceeccC-c--hhHHHHHH
Q 046585 24 IHYPRS---TPEMWPDLIRKAKEGGVDAIETYI----------FWDVHEPQ---------RRKYDFSG-N--LDFVKFFK 78 (810)
Q Consensus 24 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~tyv----------~Wn~hEp~---------~G~~df~g-~--~dl~~fl~ 78 (810)
+|..|. ..+.-++.++++++.||..=.+++ .|+...-. -+.++|.. . -|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 566664 456668899999999998666544 24432211 13334432 1 28999999
Q ss_pred HHHHcCCEEEEecCcccc
Q 046585 79 LVQDAGLYAIIRIGPYVC 96 (810)
Q Consensus 79 la~~~gL~Vilr~GPyic 96 (810)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888875
No 194
>PRK14566 triosephosphate isomerase; Provisional
Probab=31.60 E-value=1e+02 Score=33.51 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceecc-CchhHHHHHHHHHHcCCEEEEecC
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDFS-GNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
-.++|++|++.|-+ +|-|.+. .|. -+..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii----GHSERR~---~f~Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII----GHSERRR---MYGETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE----CcccccC---CCCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45699999999999 8777765 343 345666778899999999999987
No 195
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=31.10 E-value=75 Score=39.16 Aligned_cols=54 Identities=28% Similarity=0.383 Sum_probs=40.3
Q ss_pred HHHHHHcCCCEEEE-ccccCcCCCcC---c-----------------ceeccC-----chhHHHHHHHHHHcCCEEEEec
Q 046585 38 IRKAKEGGVDAIET-YIFWDVHEPQR---R-----------------KYDFSG-----NLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 38 l~k~ka~G~N~V~t-yv~Wn~hEp~~---G-----------------~~df~g-----~~dl~~fl~la~~~gL~Vilr~ 91 (810)
|.-+|.+|+++|+. +|+.-..|+.. | .|--.. .+.|..+++.++++||-|||-.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 88999999999996 78766655543 2 222222 2478888999999999999874
No 196
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=30.61 E-value=4.1e+02 Score=30.66 Aligned_cols=86 Identities=16% Similarity=0.119 Sum_probs=48.7
Q ss_pred EEeEEEEEEecCCCCCcccH----HHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 15 KRKVIIAGSIHYPRSTPEMW----PDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 15 ~p~~~~sG~~Hy~r~~~~~W----~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
-.+++++|.+.-...++... .+.++++++.++.+ |+.+.=| |+.. .+....++.++.|++|+-.
T Consensus 40 ~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v---~~I~GNH-------D~~~--~l~~~~~~l~~~gi~vl~~ 107 (407)
T PRK10966 40 VDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQL---VVLAGNH-------DSVA--TLNESRDLLAFLNTTVIAS 107 (407)
T ss_pred CCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcE---EEEcCCC-------CChh--hhhhHHHHHHHCCcEEEec
Confidence 45788999996444444333 34566777777654 4434444 4332 3455677888999998855
Q ss_pred cC------cccccccCCCCCCceeccCCC
Q 046585 91 IG------PYVCAEWNYGGFPMWLHNTPG 113 (810)
Q Consensus 91 ~G------PyicaEw~~GG~P~WL~~~p~ 113 (810)
+. |... +-..|...+|+.-.|-
T Consensus 108 ~~~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 108 ASDDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred ccccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 42 2111 2234545567665554
No 197
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.41 E-value=72 Score=34.05 Aligned_cols=60 Identities=15% Similarity=0.029 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcC-cceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQR-RKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~-G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
+.+++.|+.++++|.+.|.+.-+-...++.. -.++. -...|.+++++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4567889999999999998631100001111 01110 113678888999999999999873
No 198
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=30.01 E-value=69 Score=33.98 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
+..++.++.++++|..+|.+...+.--...+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788899999999999874333211111111100112366777888999999999997
No 199
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.75 E-value=1.6e+02 Score=30.78 Aligned_cols=127 Identities=15% Similarity=0.141 Sum_probs=70.6
Q ss_pred cccHHHHHHHHHHcCCCE-EEE--ccccCcCCC---cCc--ceec-----------cC--chhHHHHHHHHHHcCCEEEE
Q 046585 31 PEMWPDLIRKAKEGGVDA-IET--YIFWDVHEP---QRR--KYDF-----------SG--NLDFVKFFKLVQDAGLYAII 89 (810)
Q Consensus 31 ~~~W~~~l~k~ka~G~N~-V~t--yv~Wn~hEp---~~G--~~df-----------~g--~~dl~~fl~la~~~gL~Vil 89 (810)
++.-.+.++++|+.|+.+ |+| |++|...+. .=. -+|+ +| +..+.+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 455578899999999874 555 444422221 111 1222 22 23455667778888888888
Q ss_pred ecCcccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcc---------cccc
Q 046585 90 RIGPYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQI---------ENEY 160 (810)
Q Consensus 90 r~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi---------ENEy 160 (810)
|. |. +|++ ++++.-++++.+|++.+. +. ++ .++-++- .=+|
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~--~~------~llpyh~~g~~Ky~~lg~~y 182 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK--QI------HLLPFHQYGEPKYRLLGKTW 182 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc--eE------EEecCCccchhHHHHcCCcC
Confidence 85 22 3554 345666777766666541 11 11 0111111 0022
Q ss_pred cccccccCchhHHHHHHHHHHHHhcCCCc
Q 046585 161 GNIMEKYGDAGKKYIKWCANMAVAQNISE 189 (810)
Q Consensus 161 g~~~~~~~~~~~~y~~~l~~~~~~~g~~v 189 (810)
-.. .......+.|+++++++++.|+.+
T Consensus 183 ~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 183 SMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred ccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 110 112367889999999999998875
No 200
>PRK15492 triosephosphate isomerase; Provisional
Probab=29.32 E-value=1.1e+02 Score=33.03 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
..++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 45699999999999 7777765 332 2345666678889999999999987
No 201
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=28.62 E-value=1.1e+02 Score=33.57 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCC--cCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEP--QRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp--~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|++.|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677899999999999999999875422111 11211121 2378899999999999988774
No 202
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=27.72 E-value=98 Score=34.75 Aligned_cols=58 Identities=33% Similarity=0.490 Sum_probs=45.1
Q ss_pred ECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCC
Q 046585 12 IDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGL 85 (810)
Q Consensus 12 ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL 85 (810)
+.|+++..++|=-|+ .+-++.++++|++.+.++.| |+.++|+ ..+|+.+.+.++..+|
T Consensus 231 ~~~~~v~afaGIg~P--------~rFf~tL~~~g~~~~~~~~F-------pDH~~f~-~~~l~~l~~~~~~~~L 288 (336)
T COG1663 231 LKGKRVVAFAGIGNP--------QRFFATLRNLGIQVVETLAF-------PDHYDFS-AADLEDLAKKAQADGL 288 (336)
T ss_pred cCCceEEEEEecCCh--------HHHHHHHHHcCcceeeeecC-------Cchhhcc-HHHHHHHHhhhccceE
Confidence 356889999999998 45577889999999999877 5556666 4578888888877444
No 203
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.65 E-value=21 Score=36.18 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=42.6
Q ss_pred EEEEEEecCCCC---CcccHHHHHHHHHHcCCCEE--EEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 18 VIIAGSIHYPRS---TPEMWPDLIRKAKEGGVDAI--ETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 18 ~~~sG~~Hy~r~---~~~~W~~~l~k~ka~G~N~V--~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
..-+|--.|.|+ .|-.-+ +-+.++|++.+ .|-| .--.--|||-...+|.+|.++|+++||.+-|.
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 344555556674 333333 34677888854 4422 11223599998899999999999999988665
No 204
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=27.47 E-value=86 Score=33.53 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=31.9
Q ss_pred EECCEEeEEEEEEecCCCCC-cccHHHHHHHHHHcCCCEEE
Q 046585 11 IIDGKRKVIIAGSIHYPRST-PEMWPDLIRKAKEGGVDAIE 50 (810)
Q Consensus 11 ~ldG~p~~~~sG~~Hy~r~~-~~~W~~~l~k~ka~G~N~V~ 50 (810)
.+.|+|+..+.|.+|+.... ..+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 46899999999999976653 33347789999999998764
No 205
>PRK14567 triosephosphate isomerase; Provisional
Probab=27.46 E-value=1.3e+02 Score=32.51 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=38.1
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
-.++|++|++.|-+ +|-|.+. -|. +.+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45699999999998 7777765 222 3345677778889999999999988
No 206
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.26 E-value=78 Score=33.37 Aligned_cols=59 Identities=12% Similarity=-0.062 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcC-CCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVH-EPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~h-Ep~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
+.+++.++.++++|..+|.+...+.-- .+.+-.++ .-...|.++.++|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~-~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARA-TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHH-HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 667888999999999999863322100 01110010 012357888899999999999987
No 207
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=27.12 E-value=4.6e+02 Score=29.28 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=64.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceec
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
..+...+--+.+...|+|.|.+ |-..-.+-...=+-...+.++-++.+.+||+|-|-.- ..|=-+.|||+
T Consensus 55 ~~~R~~~YARllASiGINgvvl----NNVNa~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL~---- 124 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVL----NNVNANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGLP---- 124 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-----S-SS--CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS-S----
T ss_pred chhHHHHHHHHHhhcCCceEEe----cccccChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCcC----
Confidence 4456678888999999999997 4333333111112223677778888999999976531 11222335532
Q ss_pred cCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCchhHHHHHHHHHHHHhcCC
Q 046585 110 NTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMAVAQNI 187 (810)
Q Consensus 110 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 187 (810)
|.|| .-++|++|+++.++.|-++ .=.=||=++=.--|.+.|-. .|+-.-.+=..-|++.++-+|=
T Consensus 125 --------TaDP-ld~~V~~WW~~k~~eIY~~--IPDfgGflVKAdSEGqPGP~--~YgRthAdGANmlA~Al~P~GG 189 (328)
T PF07488_consen 125 --------TADP-LDPEVRQWWKDKADEIYSA--IPDFGGFLVKADSEGQPGPF--TYGRTHADGANMLARALKPHGG 189 (328)
T ss_dssp -----------T-TSHHHHHHHHHHHHHHHHH---TT--EEEE--SBTTB--GG--GGT--HHHHHHHHHHHHGGGT-
T ss_pred --------cCCC-CCHHHHHHHHHHHHHHHHh--CCCccceEEEecCCCCCCCc--ccCCCchhhHHHHHHHhhccCC
Confidence 2322 3466777777766655532 11235655555555566643 4663333334456666666653
No 208
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=26.86 E-value=1.3e+02 Score=33.57 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=47.0
Q ss_pred EECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcC
Q 046585 11 IIDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAG 84 (810)
Q Consensus 11 ~ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~g 84 (810)
.+.|++++.++|--++ +.-++.++++|++.+.+..|=.||.-.+ .|++.+.+.|++.|
T Consensus 224 ~l~~~~v~a~sGIg~P--------~~F~~~L~~~G~~~~~~~~f~DHh~yt~--------~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNP--------ERFFDTLESLGIEVVGTLAFPDHHRYTE--------QDLEKLEAEAKAAG 281 (326)
T ss_pred hccCCeeEEEEEcCCh--------HHHHHHHHHcCCeEEEeeECCCCCCCCH--------HHHHHHHHhhcccc
Confidence 3789999999999887 5667788889999998877755655443 58889999999888
No 209
>PLN02561 triosephosphate isomerase
Probab=26.76 E-value=1.4e+02 Score=32.32 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=38.9
Q ss_pred HHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 37 LIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 37 ~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
-..++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL----GHSERRA-LLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-ccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 345699999999999 7777765 222 2345677778889999999999988
No 210
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=26.58 E-value=3.4e+02 Score=30.86 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=64.0
Q ss_pred HcCCCEEEEcc----ccCcCCCcCcceeccCchhHHH--HHHHHHHcCCEEEEecCcccccccCCCCCCceeccCCCc--
Q 046585 43 EGGVDAIETYI----FWDVHEPQRRKYDFSGNLDFVK--FFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHNTPGI-- 114 (810)
Q Consensus 43 a~G~N~V~tyv----~Wn~hEp~~G~~df~g~~dl~~--fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~~p~~-- 114 (810)
++|+..+++.| ||+- |.+| .+..+ +-+-+-..|+.|+.-| |. .|+|+...-.+
T Consensus 77 ~lg~si~Rv~I~~ndfsl~-----g~~d----~w~kels~Ak~~in~g~ivfASP-------Ws---pPa~Mktt~~~ng 137 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG-----GSAD----NWYKELSTAKSAINPGMIVFASP-------WS---PPASMKTTNNRNG 137 (433)
T ss_pred ccCceEEEEEecccccccC-----CCcc----hhhhhcccchhhcCCCcEEEecC-------CC---CchhhhhccCcCC
Confidence 46888888876 4554 2222 12222 2233567899998887 65 89999763221
Q ss_pred ----ccc-cCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCc---hhHHHHHHHHHHHHhc
Q 046585 115 ----QLR-TNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGD---AGKKYIKWCANMAVAQ 185 (810)
Q Consensus 115 ----~~R-~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~ 185 (810)
+|| ...++|.+...+|+.. ++ .+|=|+-+..|.||...-. .|+. ...+.++.+++-+...
T Consensus 138 g~~g~Lk~e~Ya~yA~~l~~fv~~----m~------~nGvnlyalSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si 205 (433)
T COG5520 138 GNAGRLKYEKYADYADYLNDFVLE----MK------NNGVNLYALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASI 205 (433)
T ss_pred ccccccchhHhHHHHHHHHHHHHH----HH------hCCCceeEEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhh
Confidence 343 2345555544444433 33 4566899999999987431 1221 2345566666655543
No 211
>PLN02389 biotin synthase
Probab=26.38 E-value=87 Score=35.82 Aligned_cols=46 Identities=22% Similarity=0.428 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCCEEEEccccCcCCCcCcce-------eccCchhHHHHHHHHHHcCCEE
Q 046585 34 WPDLIRKAKEGGVDAIETYIFWDVHEPQRRKY-------DFSGNLDFVKFFKLVQDAGLYA 87 (810)
Q Consensus 34 W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~-------df~g~~dl~~fl~la~~~gL~V 87 (810)
=++.++++|++|++.+.. ++ |..|..| +|+ +..+.++.|++.||.|
T Consensus 177 ~~E~l~~LkeAGld~~~~----~L-eTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH----NL-DTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred CHHHHHHHHHcCCCEEEe----ee-cCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
Confidence 378899999999998876 33 2122222 344 6668889999999986
No 212
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=26.19 E-value=2e+02 Score=31.04 Aligned_cols=92 Identities=22% Similarity=0.350 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcC--CEEEEecCcccc-------cccCCCCCC
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAG--LYAIIRIGPYVC-------AEWNYGGFP 105 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~g--L~Vilr~GPyic-------aEw~~GG~P 105 (810)
.++|++=.++|.+.+-|-.+ ||.+ .+.+|++.|++.| +.||+..-|-.. ++|-.-.+|
T Consensus 150 ~~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP 216 (274)
T cd00537 150 IKRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIP 216 (274)
T ss_pred HHHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCC
Confidence 34555555679999999433 4444 7889999999998 556666666332 355556789
Q ss_pred ceeccCCCcccccCChhHHHHHHHHHHHHHHHHHh
Q 046585 106 MWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKE 140 (810)
Q Consensus 106 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 140 (810)
.|+.+.=. ....+.....++-.++..++++.+.+
T Consensus 217 ~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 217 DWLLERLE-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99875100 00112234456666777777777773
No 213
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=26.12 E-value=87 Score=35.94 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=50.9
Q ss_pred ECCEEeEEEEEEecCCCC-CcccHHHHHHHHHHcC--CCEEEEccccCcCCCcCcceeccCc-hhHHHHHHHHHHcCCEE
Q 046585 12 IDGKRKVIIAGSIHYPRS-TPEMWPDLIRKAKEGG--VDAIETYIFWDVHEPQRRKYDFSGN-LDFVKFFKLVQDAGLYA 87 (810)
Q Consensus 12 ldG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G--~N~V~tyv~Wn~hEp~~G~~df~g~-~dl~~fl~la~~~gL~V 87 (810)
+||-+ +-.++.+.|+- +.+..+..|++-+..| -..|-| +|+|..+|. .+|.++.++|+++|.++
T Consensus 137 idG~r--ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~Ivt----------egVfSMdGdiApL~~l~~L~~ky~a~L 204 (388)
T COG0156 137 IDGIR--LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVT----------EGVFSMDGDIAPLPELVELAEKYGALL 204 (388)
T ss_pred HHHHH--hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEE----------eccccCCCCcCCHHHHHHHHHHhCcEE
Confidence 34444 44566666664 5577788888866554 567777 999999998 89999999999999888
Q ss_pred EEe
Q 046585 88 IIR 90 (810)
Q Consensus 88 ilr 90 (810)
++-
T Consensus 205 ~VD 207 (388)
T COG0156 205 YVD 207 (388)
T ss_pred EEE
Confidence 765
No 214
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.09 E-value=1.3e+02 Score=35.28 Aligned_cols=73 Identities=14% Similarity=0.289 Sum_probs=51.5
Q ss_pred ecCcEEECCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccc----cCcCC----------------------
Q 046585 6 DANAIIIDGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIF----WDVHE---------------------- 59 (810)
Q Consensus 6 d~~~f~ldG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~----Wn~hE---------------------- 59 (810)
.-|+|+||=-| |++ +.+.-++.|+.|...++|+...++- |-+--
T Consensus 6 ~~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~ 75 (445)
T cd06569 6 EYRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTC 75 (445)
T ss_pred cccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccc
Confidence 34566665433 544 7888899999999999999998863 53210
Q ss_pred -------------CcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 60 -------------PQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 60 -------------p~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
+..|.|. ..|+.++++.|++.|+.||-.+
T Consensus 76 ~~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPEI 117 (445)
T cd06569 76 LLPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPEI 117 (445)
T ss_pred cccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEcc
Confidence 0112222 3599999999999999998554
No 215
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.08 E-value=1.1e+02 Score=24.44 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEE
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYA 87 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~V 87 (810)
-.-.+.+.-+.+.|+|.+.++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 3456788889999999998875 3333334455555432 4889999999999765
No 216
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.54 E-value=1.6e+02 Score=31.85 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=40.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcc-eecc-CchhHHHHHHHHHHc-CCEEEEecCc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRK-YDFS-GNLDFVKFFKLVQDA-GLYAIIRIGP 93 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~-~df~-g~~dl~~fl~la~~~-gL~Vilr~GP 93 (810)
.++.|.+..+++.+.|+..|++ |..-|.... =++. ....+.++++..++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~iel----N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALEL----NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE----EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 6789999999999999999999 666654321 0000 112566677776654 6777777654
No 217
>PRK06703 flavodoxin; Provisional
Probab=25.39 E-value=2.8e+02 Score=26.73 Aligned_cols=102 Identities=11% Similarity=0.023 Sum_probs=59.0
Q ss_pred CCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 13 DGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 13 dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
..-..++++...+-.-.+|+.+.+-+..+++.-++.....+|-...-. |.. .....+.+-+..++.|..++.++=
T Consensus 47 ~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~~-~~~a~~~l~~~l~~~G~~~~~~~~ 121 (151)
T PRK06703 47 LAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YPL-FCEAVTIFEERLVERGAELVQEGL 121 (151)
T ss_pred hcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hHH-HHHHHHHHHHHHHHCCCEEcccCe
Confidence 344556665555534445666777788777665665555555221100 110 123455566777889998877641
Q ss_pred cccccccCCCCCCceeccCCCcccccCChhHHHHHHHHHHHHHHHHH
Q 046585 93 PYVCAEWNYGGFPMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCK 139 (810)
Q Consensus 93 PyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 139 (810)
. ++.-.++..-++++++|.++|++.++
T Consensus 122 -------~-------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 122 -------K-------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred -------E-------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 0 01111235678888999999988776
No 218
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=25.34 E-value=1.2e+02 Score=37.83 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=44.6
Q ss_pred CcccHHHHHHHHHHcCCC--EEEEccccCcCCCcCcceeccC----chhHHHHHHHHHHcCCEEEEecCccccc
Q 046585 30 TPEMWPDLIRKAKEGGVD--AIETYIFWDVHEPQRRKYDFSG----NLDFVKFFKLVQDAGLYAIIRIGPYVCA 97 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N--~V~tyv~Wn~hEp~~G~~df~g----~~dl~~fl~la~~~gL~Vilr~GPyica 97 (810)
.-+.-+++.+.+++|||. ++-+=+.|. ++-=||+= -.++..|++-.++.|+++|+-+-|+|..
T Consensus 309 nls~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~ 377 (805)
T KOG1065|consen 309 NLSVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFIST 377 (805)
T ss_pred cHHHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCcccc
Confidence 344558899999999998 444444443 22223431 1368899999999999999998888754
No 219
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=24.92 E-value=2.8e+02 Score=30.88 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCcccccccCCCCCCceecc
Q 046585 36 DLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMWLHN 110 (810)
Q Consensus 36 ~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~WL~~ 110 (810)
..+...++.|.+||-.- .+ - .=.||..+..+.+++.||.+|...|+|.-+.|+ .|+..
T Consensus 52 ~e~~~~~a~Gg~TIVD~--------T~--~--~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~ 109 (316)
T COG1735 52 AELKRLMARGGQTIVDA--------TN--I--GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFAL 109 (316)
T ss_pred HHHHHHHHcCCCeEeeC--------Cc--c--ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhh
Confidence 35677777899988641 11 0 113699999999999999999999999988775 66653
No 220
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=24.42 E-value=1e+03 Score=26.63 Aligned_cols=232 Identities=12% Similarity=0.074 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCCEEEE-------ccccCcCCCcCcceeccCch-hHHHHHHHHHHcCCEEEEecCcccccccCCCCCCce
Q 046585 36 DLIRKAKEGGVDAIET-------YIFWDVHEPQRRKYDFSGNL-DFVKFFKLVQDAGLYAIIRIGPYVCAEWNYGGFPMW 107 (810)
Q Consensus 36 ~~l~k~ka~G~N~V~t-------yv~Wn~hEp~~G~~df~g~~-dl~~fl~la~~~gL~Vilr~GPyicaEw~~GG~P~W 107 (810)
.-++.+|++|+.-|-. +-.|.-.-..-..-+-...+ -+.+|.+.|+++||++-+=-.| ++|.....+.-
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~~~~~~~ 171 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHHPDYPPD 171 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCCTTTTSS
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcCcccCCC
Confidence 3466789999995542 12254432222222222223 5668889999999987763221 25554332222
Q ss_pred eccCCCcccccCChhHHHHHH-HHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCchhHHHHHHHHHHHHhcC
Q 046585 108 LHNTPGIQLRTNNDIFKNEMQ-VFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMAVAQN 186 (810)
Q Consensus 108 L~~~p~~~~R~~d~~y~~~~~-~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 186 (810)
...... ......+.+.+.++ .++.+|.+.+.+++. -+|=+-..... .....-...+.+++++..
T Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~------d~lWfDg~~~~--------~~~~~~~~~~~~~i~~~q 236 (346)
T PF01120_consen 172 EEGDEN-GPADGPGNWQRYYNEYWLAQLRELLTRYKP------DILWFDGGWPD--------PDEDWDSAELYNWIRKLQ 236 (346)
T ss_dssp CHCHHC-C--HCCHHHHHHHHHHHHHHHHHHHHCSTE------SEEEEESTTSC--------CCTHHHHHHHHHHHHHHS
T ss_pred ccCCcc-cccccchhhHhHhhhhhHHHHHHHHhCCCc------ceEEecCCCCc--------cccccCHHHHHHHHHHhC
Confidence 111000 00112334445555 455556666654321 12222211111 012223367777787776
Q ss_pred CCcCeEEecCCCCCcccccCCCCccc--CcCCCC-CCCCCccccccccccccccCC---CCCCCCHHHHHHHHHHHHHcC
Q 046585 187 ISEPWIMCQQSDAPEPMINTCNGFYC--DQFTPN-NPKSPKMWTENWTGWFKLWGG---RDPQRTAEDLAFSVARFFQSG 260 (810)
Q Consensus 187 ~~vp~~~~~~~~~~~~~~~~~ng~~~--~~~~~~-~p~~P~~~~E~~~GWfd~WG~---~~~~~~~~~~~~~~~~~l~~g 260 (810)
.++.+........... ..+. +...+. ....|- |-=..--..||- ....++++++...+.+..++|
T Consensus 237 p~~ii~~r~~~~~~~~------~d~~~~E~~~~~~~~~~pw---E~~~ti~~~W~y~~~~~~~ks~~~li~~l~~~vs~n 307 (346)
T PF01120_consen 237 PDVIINNRWGGNEQGD------GDYNTPERGIPGEIQGRPW---ETCTTIGPSWGYNTPDEKYKSADELIDILVDSVSRN 307 (346)
T ss_dssp TTSEEECCCSSCSSCC------BSCCEECTTBTTTEEESEE---EEEEESSSSSS-CGGGCGS--HHHHHHHHHHHHTBT
T ss_pred CeEEEecccCCCCCcc------ccccchhccCCCCCCCCCc---cccCcCCCCCcccCCCCCcCCHHHHHHHHHHHhccC
Confidence 5543321111100000 0010 110000 001111 110111233443 234568888888888888888
Q ss_pred CceeeeeeeeccCCCCCCCCCCCccccCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhc
Q 046585 261 GVLNNYYMYHGGTNFGRTAGGPYIATSYDYNAPLDEYGNLNQPKWGHLKQLHEAIKQAE 319 (810)
Q Consensus 261 ~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApL~E~G~~~t~Ky~~lr~l~~~i~~~~ 319 (810)
++++ +| -+.+.+|.+..+--..||+++..|+...
T Consensus 308 gnlL-------------LN------------igP~~dG~ip~~~~~~L~e~G~Wl~~ng 341 (346)
T PF01120_consen 308 GNLL-------------LN------------IGPDPDGTIPEEQVERLREIGDWLKVNG 341 (346)
T ss_dssp EEEE-------------EE------------E---TTSS--HHHHHHHHHHHHHHHHHG
T ss_pred ceEE-------------Ee------------cCCCCCCCcCHHHHHHHHHHHHHHHhcc
Confidence 7742 12 2334678877778888999999988654
No 221
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.69 E-value=1.8e+02 Score=31.62 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=40.6
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 29 STPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 29 ~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
.|.+.=++.+++..+.|+..|+++++.|. + ..+...++.|++.|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEEE
Confidence 34555688999999999999999887665 1 37889999999999988753
No 222
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=23.69 E-value=1.6e+02 Score=34.52 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=44.6
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 25 HYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 25 Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.|-+.|.+.-++.++++.+.|+..|++++.-|.. .++...++.|+++|+.|.+..
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 4556677777889999999999999998876653 268889999999999886553
No 223
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=23.67 E-value=98 Score=34.31 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=41.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccc----cCcCCC------cCc---------ceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIF----WDVHEP------QRR---------KYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~----Wn~hEp------~~G---------~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
+.+.-++.|+.|...++|++..++- |.+--+ ..| .|.- .|+.++++.|++.||.||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 6777899999999999999998874 433221 122 3333 49999999999999999855
Q ss_pred c
Q 046585 91 I 91 (810)
Q Consensus 91 ~ 91 (810)
+
T Consensus 93 i 93 (351)
T PF00728_consen 93 I 93 (351)
T ss_dssp E
T ss_pred c
Confidence 3
No 224
>PRK07094 biotin synthase; Provisional
Probab=23.60 E-value=71 Score=35.21 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCEEEEccc---cCcCCCcCcceeccCchhHHHHHHHHHHcCCEE
Q 046585 35 PDLIRKAKEGGVDAIETYIF---WDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYA 87 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~---Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~V 87 (810)
++.+++||++|++.|.+.+- -..++......+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 57888999999998876432 11111111123444 7778889999999864
No 225
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=23.38 E-value=2.9e+02 Score=28.18 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcC-CC-------------------cCc---ceeccC
Q 046585 13 DGKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVH-EP-------------------QRR---KYDFSG 69 (810)
Q Consensus 13 dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~h-Ep-------------------~~G---~~df~g 69 (810)
+|..|.|+-..---..+.+ ++...++.+|++|+ .|-.|.|.... +. .++ .+|+|.
T Consensus 20 ~g~~fviiKateG~~~~d~-~~~~n~~~A~~aGl-~vG~Yhf~~~~~~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~ 97 (196)
T cd06415 20 AGAKFAIVKISEGTNYVNP-KASAQVSSAIANGK-MTGGYHFARFGGSVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQ 97 (196)
T ss_pred CCCcEEEEEEcCCCccCCc-cHHHHHHHHHHCCC-eeEEEEEEecCCCHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEec
Confidence 4555555544322222332 66777777777777 56667664321 10 011 345543
Q ss_pred c---------hhHHHHHHHHHHcCCEEEEecCcccccccCC-----C--CCCceeccCCC
Q 046585 70 N---------LDFVKFFKLVQDAGLYAIIRIGPYVCAEWNY-----G--GFPMWLHNTPG 113 (810)
Q Consensus 70 ~---------~dl~~fl~la~~~gL~Vilr~GPyicaEw~~-----G--G~P~WL~~~p~ 113 (810)
. ..+.+|++.+++.|.+++|=.+++.....-. . ..|.||-+++.
T Consensus 98 ~~~~~~~~~~~~~~~f~~~v~~~G~~~~iYt~~~~~~~~~~~~~~~~~~~~~lWiA~Y~~ 157 (196)
T cd06415 98 GSGNSKAANTSAILAFMDTIKDAGYKPMLYSYKPLLLNNVDYSQIIAKYPNSLWVAAYPT 157 (196)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCcEEEecHHHHHhccCHHHHHhhCCCCeEEEcCCC
Confidence 2 3567888888888988877777654322111 1 13578877653
No 226
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=23.19 E-value=99 Score=31.08 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.2
Q ss_pred EEEeCCCccEEEEECCeeceecc
Q 046585 623 VVDLLGMGKGHAWVNGRSIGRYW 645 (810)
Q Consensus 623 ~Ldl~g~gKG~vwVNG~nlGRYW 645 (810)
.|.+++.|+=.+||||+.+|+--
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGP 29 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-
T ss_pred EEEEEeCeeEEEEECCEEeeCCc
Confidence 47778888999999999999753
No 227
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=23.10 E-value=1.7e+02 Score=32.83 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=38.4
Q ss_pred EEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCc----hhHHHHHHHHHHcCCE
Q 046585 21 AGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGN----LDFVKFFKLVQDAGLY 86 (810)
Q Consensus 21 sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~----~dl~~fl~la~~~gL~ 86 (810)
+-+.++..++ ++.|+.||++|+|.|++.|- .-.+...+.-|. .++.+.++.+++.|+.
T Consensus 90 tie~np~~lt----~e~l~~l~~~Gv~risiGvq----S~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 90 TTEANPELIT----AEWCKGLKGAGINRLSLGVQ----SFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred EEEeCCCCCC----HHHHHHHHHcCCCEEEEecc----cCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 4444444444 57899999999999999543 223323322221 2788889999999985
No 228
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=22.91 E-value=7.9e+02 Score=27.03 Aligned_cols=101 Identities=9% Similarity=-0.010 Sum_probs=55.0
Q ss_pred ccHHHHHHHHHHc-CCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHH-cCCEEEEecCcccccccCCCCCCceec
Q 046585 32 EMWPDLIRKAKEG-GVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQD-AGLYAIIRIGPYVCAEWNYGGFPMWLH 109 (810)
Q Consensus 32 ~~W~~~l~k~ka~-G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~-~gL~Vilr~GPyicaEw~~GG~P~WL~ 109 (810)
+--++.++.|++. ++..|=+ |= ++-..+.++|+.+.+ ..+.+++.| ++|.|. .
T Consensus 200 ~~~~~~~~~l~~~~~~~~iGi----NC----------~~p~~~~~~l~~~~~~~~~pl~~~P---------NaG~~~--~ 254 (304)
T PRK09485 200 TPLAEAAALLAASPQVVAVGV----NC----------TAPELVTAAIAALRAVTDKPLVVYP---------NSGEVY--D 254 (304)
T ss_pred CCHHHHHHHHhcCCCceEEEe----cC----------CCHHHHHHHHHHHHhccCCcEEEEC---------CCCCCC--C
Confidence 3346667776553 2444444 32 222366677777755 467777787 677763 1
Q ss_pred cCCCcccccCCh-hHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCchhHHHHHHHHHHHH
Q 046585 110 NTPGIQLRTNND-IFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMAV 183 (810)
Q Consensus 110 ~~p~~~~R~~d~-~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 183 (810)
..++......++ .|.+.+++|.+. |=.|| |. +++ .+.+|++.|++.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------G~~ii--------GG---CCG-ttP~hI~al~~~l~ 303 (304)
T PRK09485 255 AVTKTWHGPADDASLGELAPEWYAA--------------GARLI--------GG---CCR-TTPEDIAALAAALK 303 (304)
T ss_pred CCCCcccCCCChHHHHHHHHHHHHc--------------CCeEE--------ee---CCC-CCHHHHHHHHHHhh
Confidence 112211112233 456666666431 32454 43 244 78899999998764
No 229
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.42 E-value=1.5e+02 Score=32.00 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=47.3
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHH-HcCCEEEEecC
Q 046585 28 RSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQ-DAGLYAIIRIG 92 (810)
Q Consensus 28 r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~-~~gL~Vilr~G 92 (810)
+...+.=.+..+.+-++|++.|++..+....+...|...|.....+.++.++.+ +.-+-+++|++
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 457777789999999999999999888776666667777774445555555543 44555667875
No 230
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=22.41 E-value=93 Score=34.58 Aligned_cols=60 Identities=25% Similarity=0.472 Sum_probs=36.3
Q ss_pred EEEEEEec------CCCCCcccHHHHHHHHHHc-CCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE
Q 046585 18 VIIAGSIH------YPRSTPEMWPDLIRKAKEG-GVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI 88 (810)
Q Consensus 18 ~~~sG~~H------y~r~~~~~W~~~l~k~ka~-G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi 88 (810)
++.||. | +.+++.+-|++..|+--.. |+|-++- ||..-++.. ....++|++|+++|-+.|
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eq--fWgf~~~~~--------~~~A~lLkl~akYGGy~i 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQ--FWGFDDPGS--------EHFADLLKLCAKYGGYFI 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE----TTS--TTHH--------HHHHHHHHHHHHTT-EEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhh--heecCCchh--------HHHHHHHHHHHHhCceEE
Confidence 456666 8 3345666667777766554 8888887 466555544 378899999999999883
No 231
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.25 E-value=3.3e+02 Score=31.08 Aligned_cols=118 Identities=11% Similarity=0.114 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCC-EEEEccccCcCCCcCcceecc----C-chhHHHHHHH----HHHcCCEEEEecCcccccccCCCCC
Q 046585 35 PDLIRKAKEGGVD-AIETYIFWDVHEPQRRKYDFS----G-NLDFVKFFKL----VQDAGLYAIIRIGPYVCAEWNYGGF 104 (810)
Q Consensus 35 ~~~l~k~ka~G~N-~V~tyv~Wn~hEp~~G~~df~----g-~~dl~~fl~l----a~~~gL~Vilr~GPyicaEw~~GG~ 104 (810)
.+.++++.+.|+. .+.+ ++|-+.+..|+.- + ..+|+++++. +++.|..|.++.- .
T Consensus 221 ~~~i~~L~~~gl~~~Lai----SL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyv-L---------- 285 (368)
T PRK14456 221 TPEIDRLATSGLKTKLAV----SLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYM-L---------- 285 (368)
T ss_pred hHHHHHHHHcCCCceEEE----EecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEE-E----------
Confidence 3568999999996 6777 8888877766632 2 3355555554 4566666655520 0
Q ss_pred CceeccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCchhHHHHHHHHHHHHh
Q 046585 105 PMWLHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMAVA 184 (810)
Q Consensus 105 P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 184 (810)
.+++ .+++.-.+++.+|++.+.-++ ++|-+ |.++.. .|.....+++++.++.+++
T Consensus 286 ------I~Gv---NDs~eda~~L~~~l~~~~~~V-----------nlIpy---n~~~~~--~~~~ps~e~i~~F~~~L~~ 340 (368)
T PRK14456 286 ------LEGI---NDSPEDARKLIRFASRFFCKI-----------NLIDY---NSIVNI--KFEPVCSSTRERFRDRLLD 340 (368)
T ss_pred ------EcCC---CCCHHHHHHHHHHHhcCCCee-----------EEeee---ccCCCC--CCCCCCHHHHHHHHHHHHH
Confidence 1332 244445555555555431111 23322 444432 2444667889999999999
Q ss_pred cCCCcCeE
Q 046585 185 QNISEPWI 192 (810)
Q Consensus 185 ~g~~vp~~ 192 (810)
.|+.+-+-
T Consensus 341 ~Gi~vtvR 348 (368)
T PRK14456 341 AGLQVTVR 348 (368)
T ss_pred CCCcEEee
Confidence 99887553
No 232
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=22.24 E-value=78 Score=33.92 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=37.9
Q ss_pred HHHHHHcCCCEEEEccccCcCCCcCcceec-cCchhHHHHHHHHHHcCCEEEEecC
Q 046585 38 IRKAKEGGVDAIETYIFWDVHEPQRRKYDF-SGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 38 l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df-~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
..++|++|++.|-+ +|-|.+. .| +.+..+.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR~---~f~Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII----GHSERRQ---YFGETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE----SCHHHHH---HST-BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe----ccccccC---ccccccHHHHHHHHHHHHCCCEEEEEec
Confidence 56799999999998 7776553 22 3566888999999999999999987
No 233
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.20 E-value=1.6e+02 Score=27.65 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE
Q 046585 29 STPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI 88 (810)
Q Consensus 29 ~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi 88 (810)
.+++...+.++.+++.|+..|=.. +| ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 478899999999999998877651 22 255688999999999865
No 234
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=22.16 E-value=5.5e+02 Score=25.75 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhccccccCCCcEEEEcccccccccccccCchhHHHHHHHHHHHHh
Q 046585 127 MQVFTTKIVNMCKEANLFASQGGPIILAQIENEYGNIMEKYGDAGKKYIKWCANMAVA 184 (810)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 184 (810)
+.+-+.+++..++. .+.++|.+ .||.|.-.-++.+..+.|.+.|-.+-+.
T Consensus 101 ~~~~i~~l~~~l~~------~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq~ 150 (169)
T cd00544 101 IADEIDALLAAVRN------KPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQR 150 (169)
T ss_pred HHHHHHHHHHHHHc------CCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44455667677762 45678887 5999864323455678888877665444
No 235
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=22.13 E-value=70 Score=35.97 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCEEE-----EccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEE
Q 046585 34 WPDLIRKAKEGGVDAIE-----TYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYA 87 (810)
Q Consensus 34 W~~~l~k~ka~G~N~V~-----tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~V 87 (810)
-++.|+++|++|++.+. ++..--.+.-.|+....+ +..+.++.|+++||.+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~---~~l~~i~~a~~~Gi~~ 204 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAE---RWLEIHRTAHELGLKT 204 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHH---HHHHHHHHHHHcCCCc
Confidence 46779999999997654 222221223334433333 4557899999999975
No 236
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=22.12 E-value=1.6e+02 Score=31.78 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=52.4
Q ss_pred EEECCEEeEEEEEEecCCCC-CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceecc--CchhHHHHHHHHHHcCCE
Q 046585 10 IIIDGKRKVIIAGSIHYPRS-TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFS--GNLDFVKFFKLVQDAGLY 86 (810)
Q Consensus 10 f~ldG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~--g~~dl~~fl~la~~~gL~ 86 (810)
+.+.+..++++.| +-.+ ..+.-.+.-+.+|+.|....+.|+|=+-..| +.|. |..-|..+-+.|++.||.
T Consensus 19 ~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~~~~~~Gl~ 91 (260)
T TIGR01361 19 VKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRRAADEHGLP 91 (260)
T ss_pred EEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHHHHHHhCCC
Confidence 4555444556777 3233 4556677788889999998888877643333 4455 456788888899999999
Q ss_pred EEEec
Q 046585 87 AIIRI 91 (810)
Q Consensus 87 Vilr~ 91 (810)
++..|
T Consensus 92 ~~t~~ 96 (260)
T TIGR01361 92 VVTEV 96 (260)
T ss_pred EEEee
Confidence 98876
No 237
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=22.00 E-value=64 Score=35.73 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=41.1
Q ss_pred EeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE-Eec
Q 046585 16 RKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI-IRI 91 (810)
Q Consensus 16 p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi-lr~ 91 (810)
..++++-+..--+.| +.|++.|..+-++|+|.|+- +|+.-. |..+|.++|+++|..++ +|.
T Consensus 34 ~~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp SEEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred CEEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 345555555444444 89999999999999999984 777544 67799999999999876 564
No 238
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=21.78 E-value=1.2e+02 Score=34.41 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=40.2
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccc---cCcCCCcCcceeccCchhHHHHHHHHHHcCCE
Q 046585 20 IAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIF---WDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLY 86 (810)
Q Consensus 20 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~---Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~ 86 (810)
++-+.++.-+. ++.++.||++|+|.|++.|- -..++-.....+++ ++.+.++.+++.|+.
T Consensus 89 it~e~~p~~l~----~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~---~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 89 FTFEANPGDLT----KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEE---DVYEAIANAKKAGFD 151 (377)
T ss_pred EEEEeCCCCCC----HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHH---HHHHHHHHHHHcCCC
Confidence 34455554443 57899999999999999653 12222222334444 888999999999975
No 239
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=21.49 E-value=2.4e+02 Score=31.26 Aligned_cols=68 Identities=15% Similarity=0.368 Sum_probs=49.3
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccc-cCc-CCCcCc-----ceeccCc--hhHHHHHHHHHHcCCEEEEecCccccc
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIF-WDV-HEPQRR-----KYDFSGN--LDFVKFFKLVQDAGLYAIIRIGPYVCA 97 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~-Wn~-hEp~~G-----~~df~g~--~dl~~fl~la~~~gL~Vilr~GPyica 97 (810)
+.+.-++.++++++.||-.=.+++- |.. ++..-| .|+|+-. -|..++++..++.|++|++..=|+|+.
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~ 97 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLAD 97 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceec
Confidence 5666789999999999987666664 643 233223 2444432 289999999999999999988788753
No 240
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=21.30 E-value=3e+02 Score=30.09 Aligned_cols=58 Identities=17% Similarity=0.362 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccC--chhHHHHHHHHHHcCCEEEEec
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSG--NLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g--~~dl~~fl~la~~~gL~Vilr~ 91 (810)
..|+-...-+.+|++|.+.++- ...-|+---|+|.| ..-|...-+.++++||.|+-+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe
Confidence 4456677788899999999998 55567777799985 4567666677889999999885
No 241
>PRK04302 triosephosphate isomerase; Provisional
Probab=21.24 E-value=1.7e+02 Score=30.57 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=42.8
Q ss_pred ecCCCCCcccH--HHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecCc
Q 046585 24 IHYPRSTPEMW--PDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIGP 93 (810)
Q Consensus 24 ~Hy~r~~~~~W--~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~GP 93 (810)
.|+........ +.-++++|++|++.|-+ .+-|.. -.|. .+.++++.|+++||.+|+..|.
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcCC
Confidence 57765443322 23488999999999987 444433 2344 6889999999999999998763
No 242
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=21.24 E-value=1.4e+02 Score=34.42 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=41.7
Q ss_pred CcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEE-EEecC
Q 046585 30 TPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYA-IIRIG 92 (810)
Q Consensus 30 ~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~V-ilr~G 92 (810)
..+.-+..|+.+|+.|+|.|-++++=.---+.+-.|.= -..|-..+++++.+.|..+ +|-.|
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC
Confidence 44456788999999999999996553322222222221 1346667788899999985 68875
No 243
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.10 E-value=1.8e+02 Score=29.59 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=39.1
Q ss_pred HHHHHHHcCCCEEE-----EccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 37 LIRKAKEGGVDAIE-----TYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 37 ~l~k~ka~G~N~V~-----tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
....+++.|+.+|= |=|+|.--+..| .+.++++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35678999999886 578999999998 8999999999999998765
No 244
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.09 E-value=98 Score=33.15 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHcCCCEEEEccccCcCCC---cCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 32 EMWPDLIRKAKEGGVDAIETYIFWDVHEP---QRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 32 ~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp---~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
+.+++.++.++++|+.+|.+ |..+.+ .+..+.- -...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 45788899999999998765 333322 1111110 013677777888899999999974
No 245
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=21.08 E-value=1.9e+02 Score=32.38 Aligned_cols=118 Identities=26% Similarity=0.411 Sum_probs=71.9
Q ss_pred CCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEE-EEecCcccccccCCCCCCce
Q 046585 29 STPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYA-IIRIGPYVCAEWNYGGFPMW 107 (810)
Q Consensus 29 ~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~V-ilr~GPyicaEw~~GG~P~W 107 (810)
+....|+.--.-.+.+||-+|.+|-+|+.-+..= |++.||.-.+..--.. |+-+. ||-=++|=
T Consensus 130 ~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~si~iLha---CAhNPTGm---- 193 (410)
T KOG1412|consen 130 VSNPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEGSIIILHA---CAHNPTGM---- 193 (410)
T ss_pred ecCCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCCcEEeeec---cccCCCCC----
Confidence 3567899999999999999999999999766433 6778887777655553 33332 66554443
Q ss_pred eccCCCcccccCChhHHHHHHHHHHHHHHHHHhccccccCCCcE--EEEcccccccccccccCchhHHHHHHHHHHHHhc
Q 046585 108 LHNTPGIQLRTNNDIFKNEMQVFTTKIVNMCKEANLFASQGGPI--ILAQIENEYGNIMEKYGDAGKKYIKWCANMAVAQ 185 (810)
Q Consensus 108 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpI--I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 185 (810)
+| .++=+..|++.|++..++ |+ |+.| |. ..|..++ =.|......+.
T Consensus 194 ---DP--------------T~EQW~qia~vik~k~lf-----~fFDiAYQ-----Gf---ASGD~~~--DawAiR~fV~~ 241 (410)
T KOG1412|consen 194 ---DP--------------TREQWKQIADVIKSKNLF-----PFFDIAYQ-----GF---ASGDLDA--DAWAIRYFVEQ 241 (410)
T ss_pred ---CC--------------CHHHHHHHHHHHHhcCce-----eeeehhhc-----cc---ccCCccc--cHHHHHHHHhc
Confidence 22 133345566777653332 22 3333 21 1232222 34777777777
Q ss_pred CCCcCeEEecC
Q 046585 186 NISEPWIMCQQ 196 (810)
Q Consensus 186 g~~vp~~~~~~ 196 (810)
| .++|-|+.
T Consensus 242 g--~e~fv~QS 250 (410)
T KOG1412|consen 242 G--FELFVCQS 250 (410)
T ss_pred C--CeEEEEhh
Confidence 7 46777764
No 246
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=21.05 E-value=1.8e+02 Score=28.11 Aligned_cols=46 Identities=26% Similarity=0.412 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.-++.++++++.|+.+|.+ .-|..-. ....+.+.+++.||.+++..
T Consensus 17 ~~~e~v~~A~~~Gl~~i~i----TDH~~~~---------~~~~~~~~~~~~~i~vi~G~ 62 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAI----TDHNNFA---------GYPDFYKEAKKKGIKVIPGV 62 (175)
T ss_dssp SHHHHHHHHHHTTESEEEE----EEETTTT---------THHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEE----cCCcccc---------cchHHHHHHHhcCCceEEeE
Confidence 4588899999999999998 6663333 46688999999999988753
No 247
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=20.92 E-value=2.1e+02 Score=29.88 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHH---HHHHHHHHcCCEEEEec
Q 046585 35 PDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFV---KFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~---~fl~la~~~gL~Vilr~ 91 (810)
+.-+.++|+||.+.|-.| .-.|-.-|+ ..-+.|.++|+++ .|
T Consensus 138 etAiaml~dmG~~SiKff-------------Pm~Gl~~leE~~avAkA~a~~g~~l--EP 182 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFF-------------PMGGLKHLEELKAVAKACARNGFTL--EP 182 (218)
T ss_dssp HHHHHHHHHTT--EEEE----------------TTTTTHHHHHHHHHHHHHCT-EE--EE
T ss_pred HHHHHHHHHcCCCeeeEe-------------ecCCcccHHHHHHHHHHHHHcCcee--CC
Confidence 567999999999999873 334444444 4456788999988 87
No 248
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=20.90 E-value=2.2e+02 Score=32.45 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=48.6
Q ss_pred CEEeEEEEEEecCCCCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEecC
Q 046585 14 GKRKVIIAGSIHYPRSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRIG 92 (810)
Q Consensus 14 G~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~G 92 (810)
.++++++.|..- .....+++..+.+++.|+.++.. +-.+|.| +++ ++++.++++++.+..+|+-.|
T Consensus 31 ~~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f----~~v~~np---~~~---~v~~~~~~~~~~~~D~IiaiG 96 (383)
T PRK09860 31 FTRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIY----DGTQPNP---TTE---NVAAGLKLLKENNCDSVISLG 96 (383)
T ss_pred CCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEe----CCCCCCc---CHH---HHHHHHHHHHHcCCCEEEEeC
Confidence 378888887411 12357788888899999874333 5666666 333 888999999999999999986
No 249
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.90 E-value=81 Score=35.30 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCEEE-Ec--ccc-C-cCCCcCcceeccCchhHHHHHHHHHHcCCEE
Q 046585 35 PDLIRKAKEGGVDAIE-TY--IFW-D-VHEPQRRKYDFSGNLDFVKFFKLVQDAGLYA 87 (810)
Q Consensus 35 ~~~l~k~ka~G~N~V~-ty--v~W-n-~hEp~~G~~df~g~~dl~~fl~la~~~gL~V 87 (810)
++.|++||++|++.+. +. ++- . .+.-.|+...++ +..+.++.|+++||.|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~---~~~~~i~~a~~~Gi~v 195 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTA---EWIEIIKTAHKLGIPT 195 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHH---HHHHHHHHHHHcCCcc
Confidence 7889999999999874 11 000 0 001123333333 4568899999999965
No 250
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=20.67 E-value=1.3e+02 Score=32.07 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=38.2
Q ss_pred cccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEE-EecCccccc
Q 046585 31 PEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAI-IRIGPYVCA 97 (810)
Q Consensus 31 ~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vi-lr~GPyica 97 (810)
.+...+.++++|++|+- |+.+ .+|.+ +.++.|++.|-..| |-+|||..|
T Consensus 109 ~~~l~~~i~~l~~~gI~-VSLF-----iDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 109 AEKLKPIIERLKDAGIR-VSLF-----IDPDP------------EQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHHHHHCCCE-EEEE-----eCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 34557789999999994 6663 46665 67999999999977 999999754
No 251
>PLN03036 glutamine synthetase; Provisional
Probab=20.60 E-value=2.2e+02 Score=33.15 Aligned_cols=66 Identities=15% Similarity=0.343 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHcCCCEEEEccccCcCCCcCcceecc-Cc---------hhHHHHH--HHHHHcCCEEEEecCcccccccC
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFS-GN---------LDFVKFF--KLVQDAGLYAIIRIGPYVCAEWN 100 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~-g~---------~dl~~fl--~la~~~gL~Vilr~GPyicaEw~ 100 (810)
.-++..+.+.++|++.-.+ +||-.||+|.|. +- ..+-+++ ++|+++|+.+-+-|=|+. ++|.
T Consensus 231 i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~ 304 (432)
T PLN03036 231 ISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWN 304 (432)
T ss_pred HHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcC
Confidence 3345566889999997765 899999998875 21 2233333 678999999999888853 5677
Q ss_pred CCCC
Q 046585 101 YGGF 104 (810)
Q Consensus 101 ~GG~ 104 (810)
.-|.
T Consensus 305 GSGm 308 (432)
T PLN03036 305 GAGC 308 (432)
T ss_pred CCCc
Confidence 6663
No 252
>PLN02231 alanine transaminase
Probab=20.50 E-value=2.7e+02 Score=33.28 Aligned_cols=59 Identities=8% Similarity=0.138 Sum_probs=42.6
Q ss_pred CCCcccHHHHHHHHHHcCCCEEEEccccCcCCCcCcceeccCchhHHHHHHHHHHcCCEEEEe
Q 046585 28 RSTPEMWPDLIRKAKEGGVDAIETYIFWDVHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIR 90 (810)
Q Consensus 28 r~~~~~W~~~l~k~ka~G~N~V~tyv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr 90 (810)
.++.+..++.++..+..|.++--+++. |-|.|.=-+++=+ .+.+++++|+++|++||.-
T Consensus 252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 252 GLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 345555556666556666666545554 7788887777766 8999999999999998854
No 253
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.33 E-value=1.4e+02 Score=31.89 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHcCCCEEEEccccC-cCCCcCcceeccCchhHHHHHHHHHHcCCEEEEec
Q 046585 33 MWPDLIRKAKEGGVDAIETYIFWD-VHEPQRRKYDFSGNLDFVKFFKLVQDAGLYAIIRI 91 (810)
Q Consensus 33 ~W~~~l~k~ka~G~N~V~tyv~Wn-~hEp~~G~~df~g~~dl~~fl~la~~~gL~Vilr~ 91 (810)
.+++.++.++++|.++|.+.-... ..+..+-.++. -...|.++.++|+++|+.+.|.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR-FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH-HHHHHHHHHHHHHHcCCEEEEee
Confidence 467889999999999997631100 00000000110 01356778899999999999985
No 254
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=20.16 E-value=2e+02 Score=31.94 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=40.1
Q ss_pred EEEEecCCCCCcccHHHHHHHHHHcCCC-EEEEccc----cCcC-CCcCcceeccCchhHHHHHHHHHHcCCEEE
Q 046585 20 IAGSIHYPRSTPEMWPDLIRKAKEGGVD-AIETYIF----WDVH-EPQRRKYDFSGNLDFVKFFKLVQDAGLYAI 88 (810)
Q Consensus 20 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N-~V~tyv~----Wn~h-Ep~~G~~df~g~~dl~~fl~la~~~gL~Vi 88 (810)
++.+.++.-+. ++.|+.||++|++ .|++.+- ..+. --.+| ++++ ++.+.+++++++|+.|.
T Consensus 106 i~~esrpd~i~----~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t~~---~~~~ai~~~~~~Gi~v~ 172 (313)
T TIGR01210 106 VVVESRPEFID----EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-STFE---DFIRAAELARKYGAGVK 172 (313)
T ss_pred EEEEeCCCcCC----HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CCHH---HHHHHHHHHHHcCCcEE
Confidence 44455554444 7889999999999 5887553 2221 12233 2444 88889999999999865
Done!