BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046587
(703 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 510 RRLPAS------LKRLEIENCEKLQRLFDDEEDXXXXXXXXXXXXXXVMLQHLSIENCPE 563
R LPAS L+ L I C +L L + V LQ L +E
Sbjct: 140 RALPASIASLNRLRELSIRACPELTEL----PEPLASTDASGEHQGLVNLQSLRLEWT-G 194
Query: 564 LTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPER-GLPN 622
+ SL + + L+ L+ L+IR+ P L ++ + +L L+ + + C +L ++P G
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253
Query: 623 TISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFP 663
+ R+ + +C L LP D+H++ L L ++ C NL P
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 178 IPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDXXXXXXXXXADTDIRSLPESTCTLL 237
+P D + L+ ++ + ELP + + A +R+LP S +L
Sbjct: 91 VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLN 150
Query: 238 NLEILILRNCSRLIKLPPKM---------RNLINLRHLDIRGAKLLKEMPFGMKELKNLQ 288
L L +R C L +LP + + L+NL+ L + ++ +P + L+NL+
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLK 209
Query: 289 TL 290
+L
Sbjct: 210 SL 211
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 224 TDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKE 283
T +R+ P L+ LIL++CS L+ LP + L L LD+RG L +P + +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 284 L 284
L
Sbjct: 300 L 300
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 633 DKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLVQW 688
+ L ALP + +N LR LSI+ C L PE T + G + ++W
Sbjct: 137 NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
>pdb|3I44|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From
Bartonella Henselae At 2.0a Resolution
Length = 497
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 166 TFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFED 212
T LP+ RGYY+ TV +D+ P R R + G + LP + ED
Sbjct: 373 TGLPMGMERGYYVRPTVFADVKPHMRIFRE-EIFGPVLSLLPFNTED 418
>pdb|3RJL|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|F Chain F, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|G Chain G, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|H Chain H, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
Length = 538
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 28/145 (19%)
Query: 71 QSRKNERLEDLGGK--------CFHDLVSRSIFP-------QTSSGSSKFVMHDLIHDLA 115
Q+ + + ++GGK C +L ++SIF Q S S+ V+H+ ++D
Sbjct: 278 QTHLKQVIAEMGGKDTVVVDEDCDIELAAQSIFTSAFGFAGQKCSAGSRAVVHEKVYD-- 335
Query: 116 ELVSRETIFRLEEANLSSRRFERIRHASYTRGRYDGKNKFKVFNEIE------HLRTFLP 169
E + R+ E S + E Y D + K+ + IE L +
Sbjct: 336 -----EVLKRVIEITESKKVGEPDSADVYMGPVIDQASFNKIMDYIEIGKEEGRLVSGGK 390
Query: 170 LHERRGYYIPRTVLSDLLPKFRRLR 194
+ +GY+I T+ +DL PK R ++
Sbjct: 391 GDDSKGYFIEPTIFADLDPKARLMQ 415
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,694,276
Number of Sequences: 62578
Number of extensions: 777332
Number of successful extensions: 1336
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1317
Number of HSP's gapped (non-prelim): 30
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)