Query 046587
Match_columns 703
No_of_seqs 425 out of 3298
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 13:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.7E-48 1.9E-52 423.8 16.7 265 1-271 370-652 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.7E-43 7.9E-48 409.9 32.4 270 1-292 402-688 (1153)
3 PLN00113 leucine-rich repeat r 100.0 3.5E-37 7.5E-42 361.0 22.7 498 137-687 69-589 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.6E-36 3.6E-41 355.3 21.8 488 162-703 69-580 (968)
5 KOG0472 Leucine-rich repeat pr 99.9 2.1E-30 4.6E-35 245.5 -15.6 413 188-682 111-541 (565)
6 KOG4194 Membrane glycoprotein 99.9 5.4E-27 1.2E-31 232.5 3.8 356 192-676 79-446 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 2.3E-29 4.9E-34 238.5 -15.5 470 164-703 47-537 (565)
8 PLN03210 Resistant to P. syrin 99.9 1.3E-23 2.9E-28 246.0 23.5 351 183-686 550-910 (1153)
9 KOG0444 Cytoskeletal regulator 99.9 3.5E-27 7.6E-32 235.4 -7.9 365 190-683 6-376 (1255)
10 KOG4194 Membrane glycoprotein 99.9 3.9E-25 8.4E-30 219.4 3.9 362 162-655 78-448 (873)
11 KOG0618 Serine/threonine phosp 99.9 9.6E-27 2.1E-31 243.2 -10.3 105 187-293 41-145 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 2.5E-24 5.5E-29 215.1 -2.8 86 549-636 289-376 (1255)
13 KOG0618 Serine/threonine phosp 99.8 1.9E-23 4E-28 218.8 -5.2 457 193-701 23-507 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 1.3E-15 2.9E-20 165.7 16.6 256 191-657 201-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.6 3.5E-15 7.6E-20 162.4 14.8 237 373-684 222-460 (788)
16 KOG4237 Extracellular matrix p 99.6 3E-17 6.5E-22 156.5 -4.8 113 179-292 79-195 (498)
17 KOG4237 Extracellular matrix p 99.6 4.9E-17 1.1E-21 155.1 -5.6 404 177-610 60-475 (498)
18 PRK15370 E3 ubiquitin-protein 99.5 5E-14 1.1E-18 154.6 10.6 83 191-281 178-260 (754)
19 PRK15370 E3 ubiquitin-protein 99.5 7.4E-14 1.6E-18 153.3 11.3 118 552-681 305-427 (754)
20 KOG0617 Ras suppressor protein 99.5 6.4E-16 1.4E-20 130.3 -5.8 103 189-292 31-134 (264)
21 KOG4658 Apoptotic ATPase [Sign 99.4 2.9E-13 6.2E-18 151.1 8.2 106 190-296 544-653 (889)
22 KOG0617 Ras suppressor protein 99.4 8.6E-15 1.9E-19 123.6 -3.9 149 158-313 29-178 (264)
23 cd00116 LRR_RI Leucine-rich re 99.1 4.5E-12 9.7E-17 129.5 -3.5 87 186-272 18-119 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 4.3E-12 9.4E-17 129.7 -3.9 79 196-274 3-94 (319)
25 PF00931 NB-ARC: NB-ARC domain 98.8 4.6E-10 1E-14 112.6 -0.6 70 3-72 212-285 (287)
26 PF14580 LRR_9: Leucine-rich r 98.7 7.9E-09 1.7E-13 92.3 4.1 128 158-295 15-150 (175)
27 PRK15386 type III secretion pr 98.7 4.5E-08 9.8E-13 98.2 9.5 113 552-679 73-187 (426)
28 KOG0532 Leucine-rich repeat (L 98.7 5.2E-10 1.1E-14 112.8 -4.3 106 187-295 94-199 (722)
29 PF14580 LRR_9: Leucine-rich r 98.7 4.1E-09 8.9E-14 94.1 1.2 120 576-700 20-146 (175)
30 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.2E-13 106.7 5.0 107 187-295 112-219 (394)
31 KOG3207 Beta-tubulin folding c 98.7 5.9E-09 1.3E-13 102.1 1.3 159 135-297 119-283 (505)
32 KOG0532 Leucine-rich repeat (L 98.7 1.2E-09 2.7E-14 110.1 -3.5 194 190-431 74-270 (722)
33 PRK15386 type III secretion pr 98.7 1E-07 2.2E-12 95.6 9.8 160 474-683 51-214 (426)
34 KOG1259 Nischarin, modulator o 98.5 2E-08 4.4E-13 93.3 -1.2 135 542-683 275-413 (490)
35 PLN03150 hypothetical protein; 98.5 1.9E-07 4E-12 102.9 6.1 93 192-284 419-513 (623)
36 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 4E-12 68.3 3.9 56 192-247 2-59 (61)
37 KOG3207 Beta-tubulin folding c 98.4 1.9E-08 4.2E-13 98.5 -2.5 58 551-609 222-281 (505)
38 COG4886 Leucine-rich repeat (L 98.4 2E-07 4.2E-12 98.2 4.8 124 160-291 114-238 (394)
39 KOG4341 F-box protein containi 98.4 3.5E-09 7.6E-14 103.0 -9.0 40 397-436 163-205 (483)
40 PF13855 LRR_8: Leucine rich r 98.4 4.2E-07 9.1E-12 66.4 4.0 58 214-272 1-60 (61)
41 KOG1259 Nischarin, modulator o 98.3 7.1E-08 1.5E-12 89.8 -0.7 79 191-271 284-362 (490)
42 PLN03150 hypothetical protein; 98.3 1.1E-06 2.4E-11 96.9 8.1 110 164-278 420-532 (623)
43 KOG4341 F-box protein containi 98.2 1.5E-08 3.3E-13 98.7 -8.1 281 398-699 138-457 (483)
44 PF12799 LRR_4: Leucine Rich r 98.2 1.7E-06 3.8E-11 57.5 3.1 38 192-229 2-39 (44)
45 PF12799 LRR_4: Leucine Rich r 98.1 3.5E-06 7.6E-11 56.0 3.5 40 214-254 1-40 (44)
46 KOG0531 Protein phosphatase 1, 98.1 9E-07 2E-11 93.2 1.1 107 187-297 91-198 (414)
47 KOG1909 Ran GTPase-activating 97.9 9E-07 2E-11 84.7 -2.4 88 185-272 24-131 (382)
48 KOG1909 Ran GTPase-activating 97.9 9.8E-07 2.1E-11 84.5 -2.2 241 156-432 24-309 (382)
49 KOG2120 SCF ubiquitin ligase, 97.7 1.1E-06 2.4E-11 82.1 -5.3 81 192-272 186-271 (419)
50 KOG1859 Leucine-rich repeat pr 97.7 3.8E-07 8.1E-12 95.2 -9.9 126 550-682 163-292 (1096)
51 KOG0531 Protein phosphatase 1, 97.6 1E-05 2.2E-10 85.2 -0.3 107 189-299 70-176 (414)
52 KOG3665 ZYG-1-like serine/thre 97.6 2.9E-05 6.2E-10 85.5 2.2 112 159-276 145-265 (699)
53 KOG2120 SCF ubiquitin ligase, 97.5 4.4E-06 9.5E-11 78.2 -4.4 157 521-682 206-376 (419)
54 KOG2982 Uncharacterized conser 97.4 4.6E-05 1E-09 71.5 1.3 57 213-272 70-132 (418)
55 KOG4579 Leucine-rich repeat (L 97.4 1.8E-05 3.8E-10 65.4 -1.6 71 184-255 70-140 (177)
56 KOG4579 Leucine-rich repeat (L 97.3 2.5E-05 5.3E-10 64.6 -1.7 85 187-272 49-134 (177)
57 KOG1859 Leucine-rich repeat pr 97.3 7.1E-06 1.5E-10 86.0 -6.1 85 184-271 180-264 (1096)
58 KOG2982 Uncharacterized conser 97.2 0.00011 2.5E-09 68.9 1.3 84 188-272 68-157 (418)
59 KOG3665 ZYG-1-like serine/thre 97.1 0.0002 4.4E-09 78.9 1.6 130 162-296 122-261 (699)
60 KOG1644 U2-associated snRNP A' 96.7 0.002 4.3E-08 57.5 4.2 102 192-295 43-150 (233)
61 COG5238 RNA1 Ran GTPase-activa 96.6 0.00069 1.5E-08 63.0 1.0 85 188-272 27-131 (388)
62 COG5238 RNA1 Ran GTPase-activa 96.6 0.00036 7.7E-09 64.9 -1.4 199 210-433 26-254 (388)
63 PF00560 LRR_1: Leucine Rich R 96.4 0.0012 2.6E-08 36.3 0.6 19 216-234 2-20 (22)
64 KOG1644 U2-associated snRNP A' 96.2 0.0057 1.2E-07 54.7 4.0 84 187-271 60-150 (233)
65 KOG2739 Leucine-rich acidic nu 96.1 0.0035 7.5E-08 58.5 2.2 104 190-297 42-155 (260)
66 KOG2123 Uncharacterized conser 95.9 0.00035 7.6E-09 65.1 -4.8 42 187-229 37-78 (388)
67 PF00560 LRR_1: Leucine Rich R 95.8 0.0039 8.4E-08 34.3 0.8 22 192-213 1-22 (22)
68 KOG3864 Uncharacterized conser 95.8 0.00071 1.5E-08 60.3 -3.4 40 622-661 125-166 (221)
69 KOG2123 Uncharacterized conser 95.6 0.0012 2.5E-08 61.8 -2.7 104 189-295 17-127 (388)
70 KOG2739 Leucine-rich acidic nu 95.0 0.015 3.2E-07 54.5 2.2 83 211-296 40-127 (260)
71 KOG0473 Leucine-rich repeat pr 94.9 0.0007 1.5E-08 61.5 -6.2 87 187-274 38-124 (326)
72 KOG3864 Uncharacterized conser 94.6 0.0045 9.7E-08 55.4 -2.1 86 577-662 103-192 (221)
73 PF13504 LRR_7: Leucine rich r 94.4 0.025 5.4E-07 28.7 1.3 13 216-228 3-15 (17)
74 PF13306 LRR_5: Leucine rich r 94.2 0.15 3.2E-06 43.6 6.8 103 157-270 7-112 (129)
75 PF13504 LRR_7: Leucine rich r 93.6 0.044 9.5E-07 27.8 1.3 17 191-207 1-17 (17)
76 KOG1947 Leucine rich repeat pr 93.6 0.004 8.7E-08 67.6 -5.4 144 549-701 212-369 (482)
77 KOG1947 Leucine rich repeat pr 93.2 0.016 3.4E-07 63.0 -1.6 110 550-659 187-308 (482)
78 PF13306 LRR_5: Leucine rich r 92.8 0.61 1.3E-05 39.7 8.3 51 642-696 77-128 (129)
79 smart00370 LRR Leucine-rich re 91.1 0.16 3.5E-06 29.1 1.8 19 214-232 2-20 (26)
80 smart00369 LRR_TYP Leucine-ric 91.1 0.16 3.5E-06 29.1 1.8 19 214-232 2-20 (26)
81 KOG0473 Leucine-rich repeat pr 88.7 0.017 3.8E-07 52.7 -5.5 66 186-251 60-125 (326)
82 smart00367 LRR_CC Leucine-rich 85.4 0.54 1.2E-05 26.9 1.4 15 646-660 2-16 (26)
83 smart00369 LRR_TYP Leucine-ric 85.4 0.6 1.3E-05 26.7 1.6 21 190-210 1-21 (26)
84 smart00370 LRR Leucine-rich re 85.4 0.6 1.3E-05 26.7 1.6 21 190-210 1-21 (26)
85 smart00364 LRR_BAC Leucine-ric 76.0 1.8 3.8E-05 24.7 1.2 17 215-231 3-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 72.7 2.8 6.2E-05 24.0 1.6 16 214-229 2-17 (26)
87 PF13516 LRR_6: Leucine Rich r 62.7 4 8.6E-05 22.7 0.9 14 214-227 2-15 (24)
88 smart00368 LRR_RI Leucine rich 49.7 13 0.00028 21.7 1.6 14 214-227 2-15 (28)
89 PF05725 FNIP: FNIP Repeat; I 42.2 46 0.001 21.8 3.6 31 647-678 13-43 (44)
90 PRK04841 transcriptional regul 35.6 71 0.0015 37.9 6.4 80 23-119 251-332 (903)
91 PF13730 HTH_36: Helix-turn-he 31.3 89 0.0019 21.5 3.9 51 33-95 2-55 (55)
92 PF14162 YozD: YozD-like prote 24.1 1.3E+02 0.0028 20.4 3.1 31 64-97 22-52 (57)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-48 Score=423.78 Aligned_cols=265 Identities=29% Similarity=0.483 Sum_probs=222.9
Q ss_pred CChHHHHHHHhhcCcCCCC-----CCCchHHHHHhhccCchhhhhHhhhhcCCCCCCccCHHHHHHHHHHCCCCccCCCC
Q 046587 1 MRHDAWDDILDSKIWDLPQ-----QSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKN 75 (703)
Q Consensus 1 k~~~~W~~~l~~~~~~~~~-----~~~i~~~L~lSYd~L~~~~K~cFL~~a~fp~~~~i~~~~Li~~wi~~g~~~~~~~~ 75 (703)
+.++||+++.+...+.+.. ++.|+++|++|||+||+++|.||||||+|||||+|++++||.|||||||+.+.+.+
T Consensus 370 ~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~ 449 (889)
T KOG4658|consen 370 KTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGG 449 (889)
T ss_pred CcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccc
Confidence 3567999999876555222 46899999999999998899999999999999999999999999999999997788
Q ss_pred chHHHHHHHHHHHHHhCCCccccC--CCCCceeeCcHHHHHHHHhhc-----cceEEEecC-----CcccccCCceEEEE
Q 046587 76 ERLEDLGGKCFHDLVSRSIFPQTS--SGSSKFVMHDLIHDLAELVSR-----ETIFRLEEA-----NLSSRRFERIRHAS 143 (703)
Q Consensus 76 ~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~~mHdlv~d~a~~i~~-----~~~~~~~~~-----~~~~~~~~~~r~l~ 143 (703)
+.++++|+.|+.+|++++|++... +...+|+|||+|||||.|+|+ ++...+... ......+..+|+++
T Consensus 450 ~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s 529 (889)
T KOG4658|consen 450 ETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMS 529 (889)
T ss_pred cchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEE
Confidence 999999999999999999999865 456889999999999999999 555444432 12234456789999
Q ss_pred EEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCC-CCccCccccCCCcCceEecc
Q 046587 144 YTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYC-IGELPMSFEDLRLLRLLNLA 222 (703)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~l~~L~~L~L~ 222 (703)
+..+.... ...-..+++|++|.+..+.. ....+...+|..++.||||||++|. +..+|.+|+.|.+||||+++
T Consensus 530 ~~~~~~~~---~~~~~~~~~L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 530 LMNNKIEH---IAGSSENPKLRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred Eeccchhh---ccCCCCCCccceEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 88875432 23334566899999988753 2345566779999999999999887 79999999999999999999
Q ss_pred CCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCc
Q 046587 223 DTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGA 271 (703)
Q Consensus 223 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 271 (703)
++.|..+|.++++|.+|.+|++..+..+..+|..+..|++||+|.+...
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 9999999999999999999999998777777776677999999999765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.7e-43 Score=409.87 Aligned_cols=270 Identities=18% Similarity=0.253 Sum_probs=196.8
Q ss_pred CChHHHHHHHhhcCcCCCCCCCchHHHHHhhccCch-hhhhHhhhhcCCCCCCccCHHHHHHHHHHCCCCccCCCCchHH
Q 046587 1 MRHDAWDDILDSKIWDLPQQSGVLPVLRLSYHHLPS-HLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLE 79 (703)
Q Consensus 1 k~~~~W~~~l~~~~~~~~~~~~i~~~L~lSYd~L~~-~~K~cFL~~a~fp~~~~i~~~~Li~~wi~~g~~~~~~~~~~~~ 79 (703)
|+.++|++++++.....+ .+|+++|++|||+|++ +.|.||+||||||.++++ +.+..|.|.+.+..
T Consensus 402 k~~~~W~~~l~~L~~~~~--~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-------- 468 (1153)
T PLN03210 402 RDKEDWMDMLPRLRNGLD--GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-------- 468 (1153)
T ss_pred CCHHHHHHHHHHHHhCcc--HHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc--------
Confidence 567899999987654332 6899999999999987 499999999999998754 34677777664431
Q ss_pred HHHHHHHHHHHhCCCccccCCCCCceeeCcHHHHHHHHhhccce-------EEEecCC-----cccccCCceEEEEEEcC
Q 046587 80 DLGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAELVSRETI-------FRLEEAN-----LSSRRFERIRHASYTRG 147 (703)
Q Consensus 80 ~~~~~~~~~L~~~~ll~~~~~~~~~~~mHdlv~d~a~~i~~~~~-------~~~~~~~-----~~~~~~~~~r~l~~~~~ 147 (703)
+..++.|+++||+++.. .+++|||++|+||+++++++. +.+...+ ......+.++++++...
T Consensus 469 ---~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 469 ---NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred ---hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 22488999999998754 469999999999999998653 1111110 01122345677766544
Q ss_pred ccCcc-cccccccCCCceeEeeeccCCCC--cccchhhhhhhhcCC-CcccEEecCCCCCCccCccccCCCcCceEeccC
Q 046587 148 RYDGK-NKFKVFNEIEHLRTFLPLHERRG--YYIPRTVLSDLLPKF-RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLAD 223 (703)
Q Consensus 148 ~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~--~~~~~~~~~~~~~~l-~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~ 223 (703)
..... ....+|.++++|+.|.+...... ....... +..|..+ ..||.|++.++.+..+|..| ...+|++|++++
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~l-p~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~ 620 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHL-PEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQG 620 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeec-CcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcC
Confidence 33211 23346788999999887654210 1111112 2223333 46999999999999999887 568999999999
Q ss_pred CCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCe
Q 046587 224 TDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSN 292 (703)
Q Consensus 224 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 292 (703)
|.+..+|..+..+++|+.|+|++|..+..+|. ++.+++|++|++++|..+..+|..++++++|+.|++
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 99999999899999999999998877888886 888999999999998877788877777777766653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.5e-37 Score=361.01 Aligned_cols=498 Identities=16% Similarity=0.176 Sum_probs=295.5
Q ss_pred CceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCC-ccCccccCCCc
Q 046587 137 ERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIG-ELPMSFEDLRL 215 (703)
Q Consensus 137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~l~~ 215 (703)
.+++.+.+..+..... ....+..+++|+.|.+.++. +...++...+..+++||+|+|++|.+. .+|. +.+.+
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~----~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQ----LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCc----cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 3566666665443221 23456778888888887665 222344455667888888888888864 3453 45778
Q ss_pred CceEeccCCCCc-cccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeE
Q 046587 216 LRLLNLADTDIR-SLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFI 294 (703)
Q Consensus 216 L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 294 (703)
|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++..
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 888888888776 6777788888888888888755567777788888888888888876667777788888888887765
Q ss_pred eecC-CCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCC
Q 046587 295 VGKG-ETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHK 373 (703)
Q Consensus 295 ~~~~-~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (703)
+... ..+..+..+++|+.|. +.. +......+..+..+.+|+.|+++.+.... .....+..++
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~----L~~----n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------~~p~~l~~l~ 284 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLD----LVY----NNLTGPIPSSLGNLKNLQYLFLYQNKLSG---------PIPPSIFSLQ 284 (968)
T ss_pred CccCCcCChhHhcCCCCCEEE----CcC----ceeccccChhHhCCCCCCEEECcCCeeec---------cCchhHhhcc
Confidence 5533 2334455555555442 111 11222344456666777777776543110 1122334456
Q ss_pred CcceEEEeccCCC-CCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeecccccCCCcccCCC
Q 046587 374 CIKKVAIRNYGGA-RFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFP 451 (703)
Q Consensus 374 ~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~ 451 (703)
+|+.|++++|... .+|.++.. +++|+.|++++|...+..| .+..+++|+.|++++|.....++..+. .++
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~------~~~ 356 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVIQ--LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG------KHN 356 (968)
T ss_pred CcCEEECcCCeeccCCChhHcC--CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh------CCC
Confidence 6777777666543 45555554 6677777777766655555 456667777777766654434433322 255
Q ss_pred ccceeceeeccCCCcccCCCC---CCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEE-------
Q 046587 452 SLEILKPSIAECPKLSGQLPE---LLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEI------- 521 (703)
Q Consensus 452 ~L~~L~l~~~~~~~l~~~~~~---~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l------- 521 (703)
+|+.|+++.+.+ .+.+|. .+++|+.|++++|......+. .+.. .++|+.|++
T Consensus 357 ~L~~L~Ls~n~l---~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~---~~~~------------~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 357 NLTVLDLSTNNL---TGEIPEGLCSSGNLFKLILFSNSLEGEIPK---SLGA------------CRSLRRVRLQDNSFSG 418 (968)
T ss_pred CCcEEECCCCee---EeeCChhHhCcCCCCEEECcCCEecccCCH---HHhC------------CCCCCEEECcCCEeee
Confidence 566655443322 222232 235566666655542110000 0000 012222222
Q ss_pred ------ecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccC
Q 046587 522 ------ENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGL 595 (703)
Q Consensus 522 ------~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~ 595 (703)
.+++.|+.+++++|.+.+..+. .+..+++|+.|++++|...+.+|..+ ..++|+.|++++|+....+|..+
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINS--RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccCh--hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhh
Confidence 2234455555555555443322 33445567777777776666666555 34567777777776666666667
Q ss_pred CCCCCCcEEEecCCCCCCccCCC-CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCCCcCe
Q 046587 596 PNLKCLQSIYIWKCPSLVSFPER-GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPTSLTS 673 (703)
Q Consensus 596 ~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~ 673 (703)
.++++|+.|++++|.....+|.. ..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|.. ..+++|+.
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 77777777777777555555532 33566777777776666667777777777777777777555556554 23567777
Q ss_pred EEEecCCCCccccc
Q 046587 674 LRIGDFKMYKTLVQ 687 (703)
Q Consensus 674 L~i~~c~~l~~~~~ 687 (703)
|++++|+....+|.
T Consensus 576 l~ls~N~l~~~~p~ 589 (968)
T PLN00113 576 VNISHNHLHGSLPS 589 (968)
T ss_pred EeccCCcceeeCCC
Confidence 77777776666653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-36 Score=355.32 Aligned_cols=488 Identities=18% Similarity=0.203 Sum_probs=365.5
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCC-ccCcccc-CCCcCceEeccCCCCc-ccccccccccc
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIG-ELPMSFE-DLRLLRLLNLADTDIR-SLPESTCTLLN 238 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~-~l~~L~~L~L~~~~i~-~lp~~i~~L~~ 238 (703)
.+++.|.+.++. .....+..|..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|.++ .+|. +.+++
T Consensus 69 ~~v~~L~L~~~~-----i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKN-----ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CcEEEEEecCCC-----ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 468888877654 12233556889999999999999985 7887764 9999999999999987 5554 57899
Q ss_pred CcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecC-CCCCChhhhhhhhccCCce
Q 046587 239 LEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKG-ETASGLEDLKCLNFLCDEL 317 (703)
Q Consensus 239 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~-~~~~~~~~L~~L~~L~~~l 317 (703)
|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++..+... ..|..+..+++|+.+.
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--- 218 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY--- 218 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE---
Confidence 999999999666688999999999999999999877889999999999999998776643 3345566666666542
Q ss_pred EEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCC-CCCcccCCCC
Q 046587 318 CMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGA-RFPHWIGDPS 396 (703)
Q Consensus 318 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~ 396 (703)
+. .+......+..+..+++|+.|+++++... ......+..+++|+.|+++++... .+|.++..
T Consensus 219 -L~----~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-- 282 (968)
T PLN00113 219 -LG----YNNLSGEIPYEIGGLTSLNHLDLVYNNLT---------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-- 282 (968)
T ss_pred -Cc----CCccCCcCChhHhcCCCCCEEECcCceec---------cccChhHhCCCCCCEEECcCCeeeccCchhHhh--
Confidence 21 12223345566788899999999765411 123345667889999999988764 57777775
Q ss_pred CCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCC---
Q 046587 397 FSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPE--- 472 (703)
Q Consensus 397 ~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~--- 472 (703)
+++|+.|++++|...+.+| .+..+++|+.|++.+|.....++..+. .+++|+.|.+.-+.. .+.+|.
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~------~l~~L~~L~L~~n~l---~~~~p~~l~ 353 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT------SLPRLQVLQLWSNKF---SGEIPKNLG 353 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh------cCCCCCEEECcCCCC---cCcCChHHh
Confidence 8999999999998877777 578899999999999876555554443 388899877654433 344443
Q ss_pred CCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEE-------------ecCcccccccccccccCC
Q 046587 473 LLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEI-------------ENCEKLQRLFDDEEDASS 539 (703)
Q Consensus 473 ~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l-------------~~~~~L~~l~~~~~~~~~ 539 (703)
.+++|+.|++++|.-....+.. + .-..+|+.+++ .+|++|+.+.+.+|.+.+
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~---~------------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEG---L------------CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChh---H------------hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 4789999999988632111100 0 00123444433 457788888888887765
Q ss_pred CCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCC-
Q 046587 540 SSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPER- 618 (703)
Q Consensus 540 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~- 618 (703)
..+. .+..++.|+.|++++|.....++..+..+++|+.|++++|.....+|..+ ..++|+.|++++|.....+|..
T Consensus 419 ~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 419 ELPS--EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred ECCh--hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhh
Confidence 5443 66777789999999988777777766678889999999998777777654 4688999999998766666642
Q ss_pred CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCCCcCeEEEecCCCCccccccCcCCCCcee
Q 046587 619 GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLG 697 (703)
Q Consensus 619 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~l~~l~~L~ 697 (703)
..+++|+.|++++|.....+|..+.++++|++|+|++|...+.+|.. +.+++|+.|++++|.....+|.. +.++++|+
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~ 574 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN-LGNVESLV 574 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh-HhcCcccC
Confidence 34678999999998877788999999999999999999554555544 34689999999999887788866 88899999
Q ss_pred eEEecC
Q 046587 698 RLYIVD 703 (703)
Q Consensus 698 ~L~l~~ 703 (703)
.|++++
T Consensus 575 ~l~ls~ 580 (968)
T PLN00113 575 QVNISH 580 (968)
T ss_pred EEeccC
Confidence 999874
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.1e-30 Score=245.46 Aligned_cols=413 Identities=21% Similarity=0.216 Sum_probs=221.5
Q ss_pred cCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEe
Q 046587 188 PKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLD 267 (703)
Q Consensus 188 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 267 (703)
.....|+.++.+.|.+.++|++|+.+..|..|+..+|++.++|.+++.+.+|..|++.+| .+..+|+..-+++.|++||
T Consensus 111 ~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcc
Confidence 334444444444444444444444444444444444444444444444444444444443 3444443333344444444
Q ss_pred ecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceE
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTL 347 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 347 (703)
...| .++.+|..++.+.+|+.|++..+.....| .+.+|+.|+.+++
T Consensus 190 ~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP---------------------------------ef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 190 CNSN-LLETLPPELGGLESLELLYLRRNKIRFLP---------------------------------EFPGCSLLKELHV 235 (565)
T ss_pred cchh-hhhcCChhhcchhhhHHHHhhhcccccCC---------------------------------CCCccHHHHHHHh
Confidence 4444 24444444444444444444333322221 3444445555544
Q ss_pred EccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceee
Q 046587 348 DWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLA 427 (703)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~ 427 (703)
+.+. .+.--.+....++++..|+++.+..+++|..+.- +.+|.+|++++|......+.+|++ .|+.|.
T Consensus 236 g~N~---------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 236 GENQ---------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPYSLGNL-HLKFLA 303 (565)
T ss_pred cccH---------HHhhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCCcccccc-eeeehh
Confidence 3211 2222334455678899999999999999998876 899999999999987777789999 999999
Q ss_pred ecccccceeecccccCCCcccCCCccceece-------eeccCC-Cccc-----CCCC--CCCCccEEEEecCCCccccc
Q 046587 428 VKGLKKLKSIESEVYGEGFSMPFPSLEILKP-------SIAECP-KLSG-----QLPE--LLPSLETLVVSKCKKLFIRA 492 (703)
Q Consensus 428 l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l-------~~~~~~-~l~~-----~~~~--~l~~L~~L~l~~~~~l~~~~ 492 (703)
+.||+. +.+..++...+. -.-|++|.- +...-. .-.+ ..|. .+-+.+.|++++-.
T Consensus 304 leGNPl-rTiRr~ii~~gT---~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q------ 373 (565)
T KOG0472|consen 304 LEGNPL-RTIRREIISKGT---QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ------ 373 (565)
T ss_pred hcCCch-HHHHHHHHcccH---HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc------
Confidence 999873 223222211111 112233221 000000 0000 1111 13455556555432
Q ss_pred eeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCcccccccc
Q 046587 493 EWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQ 572 (703)
Q Consensus 493 ~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 572 (703)
++.+|...+- .- .-.-.+.+.++.|...+.. ..++.+..+.+.-+..+..+..+|..+.
T Consensus 374 -----------lt~VPdEVfe-a~------~~~~Vt~VnfskNqL~elP---k~L~~lkelvT~l~lsnn~isfv~~~l~ 432 (565)
T KOG0472|consen 374 -----------LTLVPDEVFE-AA------KSEIVTSVNFSKNQLCELP---KRLVELKELVTDLVLSNNKISFVPLELS 432 (565)
T ss_pred -----------cccCCHHHHH-Hh------hhcceEEEecccchHhhhh---hhhHHHHHHHHHHHhhcCccccchHHHH
Confidence 2222221110 00 0001222333333322211 1222222233333333445555566666
Q ss_pred ccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCCC-CCccEEEeccCCCCcccccc-cCCCCCcce
Q 046587 573 FLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLP-NTISRVGIGECDKLEALPND-LHKINSLRY 650 (703)
Q Consensus 573 ~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~ 650 (703)
.+++|..|++++| .+..+|..++.+..|+.|+|+.| .+..+|....- ..++.+-.+ .+.+..++.. +.++.+|.+
T Consensus 433 ~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas-~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLAS-NNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred hhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhc-cccccccChHHhhhhhhcce
Confidence 6778888888766 67778888888888888888887 56666654443 334444443 3667777554 788888888
Q ss_pred EeeccCCCcccCCCC-CCCCCcCeEEEecCCCC
Q 046587 651 LSIQLCRNLVSFPEE-GFPTSLTSLRIGDFKMY 682 (703)
Q Consensus 651 L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l 682 (703)
|++.+| .+.++|+. |.+.+|++|++.|||.-
T Consensus 510 LDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNN-DLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCC-chhhCChhhccccceeEEEecCCccC
Confidence 888888 78888876 67888888888888743
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=5.4e-27 Score=232.51 Aligned_cols=356 Identities=18% Similarity=0.203 Sum_probs=189.9
Q ss_pred cccEEecCCCCCCcc-CccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccC-ccccCCCcccEEeec
Q 046587 192 RLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIR 269 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 269 (703)
.-+.||+++|.+..+ +..|.++.+|+.+++..|.++.+|...+...+|+.|+|.+| .+..+. +.+..++.||.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 345688888877666 45567788888888888888888777666777888888876 444443 446777777788877
Q ss_pred CccccccCCcc-CCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEE
Q 046587 270 GAKLLKEMPFG-MKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLD 348 (703)
Q Consensus 270 ~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 348 (703)
.|. +.++|.. +..-.
T Consensus 158 rN~-is~i~~~sfp~~~--------------------------------------------------------------- 173 (873)
T KOG4194|consen 158 RNL-ISEIPKPSFPAKV--------------------------------------------------------------- 173 (873)
T ss_pred hch-hhcccCCCCCCCC---------------------------------------------------------------
Confidence 773 4444321 22222
Q ss_pred ccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceee
Q 046587 349 WGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLA 427 (703)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~ 427 (703)
++++|++.+|.+..+-..-++ .+.+|..|.++.|.+....+ .|..+|+|+.|+
T Consensus 174 -------------------------ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 174 -------------------------NIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred -------------------------CceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 333444444443333322222 25667777777766644333 466677777777
Q ss_pred ecccccceee-cccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCcccc
Q 046587 428 VKGLKKLKSI-ESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTF 506 (703)
Q Consensus 428 l~~~~~l~~~-~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~ 506 (703)
+..|. ++.+ +..|.| +++|+.|.+.-+++.++.....-.+.++++|++..|. +..
T Consensus 228 LnrN~-irive~ltFqg------L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-----------------l~~ 283 (873)
T KOG4194|consen 228 LNRNR-IRIVEGLTFQG------LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-----------------LQA 283 (873)
T ss_pred ccccc-eeeehhhhhcC------chhhhhhhhhhcCcccccCcceeeecccceeecccch-----------------hhh
Confidence 76554 2222 222222 5555555555555555544444445666666666654 121
Q ss_pred ccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCc
Q 046587 507 IARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCP 586 (703)
Q Consensus 507 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 586 (703)
+..+ ++.++.+|+.++++.|.+..+... ++.-.++|++|+|++|....--+..+..++.|++|.|+.|.
T Consensus 284 vn~g---------~lfgLt~L~~L~lS~NaI~rih~d--~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 284 VNEG---------WLFGLTSLEQLDLSYNAIQRIHID--SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred hhcc---------cccccchhhhhccchhhhheeecc--hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 1211 244455555555555555544433 33334456666666653322223333445566666666653
Q ss_pred Cccccc-ccCCCCCCCcEEEecCCCCCCccCCC----CCCCCccEEEeccCCCCccccc-ccCCCCCcceEeeccCCCcc
Q 046587 587 ELESIL-DGLPNLKCLQSIYIWKCPSLVSFPER----GLPNTISRVGIGECDKLEALPN-DLHKINSLRYLSIQLCRNLV 660 (703)
Q Consensus 587 ~l~~~p-~~~~~l~~L~~L~l~~c~~l~~~~~~----~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~ 660 (703)
+..+. ..+..+.+|++|++++|.....+.+. ..+++|+.|.+.+ +++++||. .|.++++|+.|++.+| .+.
T Consensus 353 -i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aia 429 (873)
T KOG4194|consen 353 -IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIA 429 (873)
T ss_pred -hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC-cce
Confidence 33332 23455666666666665433333221 1145566666665 44555543 4555666666666666 444
Q ss_pred cCCCCCC-CCCcCeEEE
Q 046587 661 SFPEEGF-PTSLTSLRI 676 (703)
Q Consensus 661 ~l~~~~~-~~~L~~L~i 676 (703)
+|-...| +-.|++|.+
T Consensus 430 SIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 430 SIQPNAFEPMELKELVM 446 (873)
T ss_pred eecccccccchhhhhhh
Confidence 4443333 224544443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=2.3e-29 Score=238.49 Aligned_cols=470 Identities=21% Similarity=0.223 Sum_probs=289.2
Q ss_pred eeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEe
Q 046587 164 LRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILI 243 (703)
Q Consensus 164 Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 243 (703)
+..+++.++. ......-+..+..|.||++.+|.+..+|++++.+..++.|+.++|++.++|+.++.+.+|..|+
T Consensus 47 l~~lils~N~------l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHND------LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCc------hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 4455555543 2222333567788888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCcc
Q 046587 244 LRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLE 323 (703)
Q Consensus 244 L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~ 323 (703)
.++| .+.++|++|+.+..|..|+..+|+ ....|.+++.+.+|..+.+.++.....+.....++.|.++.
T Consensus 121 ~s~n-~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld--------- 189 (565)
T KOG0472|consen 121 CSSN-ELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD--------- 189 (565)
T ss_pred cccc-ceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc---------
Confidence 8886 677888888888888888888775 66778888888888877776666555544444455555543
Q ss_pred ccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEE
Q 046587 324 NVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVL 403 (703)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L 403 (703)
...+.-+..+..++++ .+|..|++..+.+..+|. +.. ++.|++|
T Consensus 190 ~~~N~L~tlP~~lg~l---------------------------------~~L~~LyL~~Nki~~lPe-f~g--cs~L~El 233 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGL---------------------------------ESLELLYLRRNKIRFLPE-FPG--CSLLKEL 233 (565)
T ss_pred cchhhhhcCChhhcch---------------------------------hhhHHHHhhhcccccCCC-CCc--cHHHHHH
Confidence 1122223333334444 444455555555555553 222 5666666
Q ss_pred EEeccCCCCcCC--CCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEE
Q 046587 404 KLENCHNCVSLP--SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLV 481 (703)
Q Consensus 404 ~l~~~~~~~~l~--~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~ 481 (703)
++..|.. +.+| ...+++++..|++.+|+ ++++|.+.+- +.+|++|+++.++++.+.-.+ +.+ .|+.|.
T Consensus 234 h~g~N~i-~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~cl------LrsL~rLDlSNN~is~Lp~sL-gnl-hL~~L~ 303 (565)
T KOG0472|consen 234 HVGENQI-EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICL------LRSLERLDLSNNDISSLPYSL-GNL-HLKFLA 303 (565)
T ss_pred HhcccHH-HhhHHHHhcccccceeeeccccc-cccCchHHHH------hhhhhhhcccCCccccCCccc-ccc-eeeehh
Confidence 6665554 3333 23456666666666653 5555555444 556666666666665553222 234 677777
Q ss_pred EecCCCccccceee--------EEEcC---CCccccccc-----cCCCCCccEEEEecCcccccccccccccCCCCCCCC
Q 046587 482 VSKCKKLFIRAEWM--------LYIRD---RDCLTFIAR-----RRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPA 545 (703)
Q Consensus 482 l~~~~~l~~~~~~~--------~~i~~---~~~l~~~~~-----~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~ 545 (703)
+.+||-=+...+.. -++++ |..+..-.. ...+ +-..-+....-..+.+..+....+......+
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~-~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVf 382 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP-SESFPDIYAIITTKILDVSDKQLTLVPDEVF 382 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC-CCcccchhhhhhhhhhcccccccccCCHHHH
Confidence 88887322100000 00000 000000000 0000 0000011111122222222222221111100
Q ss_pred CCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCC-CCCCCCc
Q 046587 546 SSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPE-RGLPNTI 624 (703)
Q Consensus 546 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L 624 (703)
....-.-.+..+++.| .+.++|.....+..+.+.-+.+++.+..+|..+..+++|..|++++| .+.++|. .+....|
T Consensus 383 ea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~L 460 (565)
T KOG0472|consen 383 EAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRL 460 (565)
T ss_pred HHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhh
Confidence 0000011445555555 34556665555555555545555567777888889999999999887 6888885 4456779
Q ss_pred cEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCC--CCCcCeEEEecCCCCccccccCcCCCCceeeEEec
Q 046587 625 SRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGF--PTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIV 702 (703)
Q Consensus 625 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~ 702 (703)
+.|+++.+ .+..+|..+..+..|+.+-.+++ +++.+++.++ +.+|.+||+..| .+.++|+. ++++++|++|+++
T Consensus 461 q~LnlS~N-rFr~lP~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~-LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 461 QTLNLSFN-RFRMLPECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPI-LGNMTNLRHLELD 536 (565)
T ss_pred heeccccc-ccccchHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCC-chhhCChh-hccccceeEEEec
Confidence 99999984 79999998888888888888878 9999998854 789999999885 57888877 9999999999998
Q ss_pred C
Q 046587 703 D 703 (703)
Q Consensus 703 ~ 703 (703)
+
T Consensus 537 g 537 (565)
T KOG0472|consen 537 G 537 (565)
T ss_pred C
Confidence 5
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.3e-23 Score=246.01 Aligned_cols=351 Identities=26% Similarity=0.403 Sum_probs=241.7
Q ss_pred hhhhhcCCCcccEEecCCCCC-------CccCccccCC-CcCceEeccCCCCccccccccccccCcEEecCCCCCCcccC
Q 046587 183 LSDLLPKFRRLRMLSLQGYCI-------GELPMSFEDL-RLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLP 254 (703)
Q Consensus 183 ~~~~~~~l~~Lr~L~L~~~~l-------~~lp~~i~~l-~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 254 (703)
...+|.+|++|+.|.+..+.. ..+|..+..+ .+||+|++.++.++.+|..+ ...+|+.|++.+| .+..+|
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~ 627 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLW 627 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccc
Confidence 345567777777777754421 2345555544 34777777777777777665 4567777777775 566677
Q ss_pred ccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhh
Q 046587 255 PKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREA 334 (703)
Q Consensus 255 ~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~ 334 (703)
.++..+++|+.|+++++..+..+|. ++.+++|++|+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~------------------------------------------- 663 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK------------------------------------------- 663 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE-------------------------------------------
Confidence 6667777777777776654455442 33444444433
Q ss_pred hcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEecc-CCCCCCcccCCCCCCCccEEEEeccCCCCc
Q 046587 335 TVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNY-GGARFPHWIGDPSFSKMKVLKLENCHNCVS 413 (703)
Q Consensus 335 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~ 413 (703)
+.+| ....+|..+.. +++|+.|++++|...+.
T Consensus 664 ---------------------------------------------L~~c~~L~~lp~si~~--L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 664 ---------------------------------------------LSDCSSLVELPSSIQY--LNKLEDLDMSRCENLEI 696 (1153)
T ss_pred ---------------------------------------------ecCCCCccccchhhhc--cCCCCEEeCCCCCCcCc
Confidence 2222 12234555544 77888888888887777
Q ss_pred CCCCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccce
Q 046587 414 LPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAE 493 (703)
Q Consensus 414 l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~ 493 (703)
+|....+++|+.|.+++|..++. +|...++|+.|+++++.
T Consensus 697 Lp~~i~l~sL~~L~Lsgc~~L~~---------------------------------~p~~~~nL~~L~L~~n~------- 736 (1153)
T PLN03210 697 LPTGINLKSLYRLNLSGCSRLKS---------------------------------FPDISTNISWLDLDETA------- 736 (1153)
T ss_pred cCCcCCCCCCCEEeCCCCCCccc---------------------------------cccccCCcCeeecCCCc-------
Confidence 77544778888888888764432 22334577888887775
Q ss_pred eeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccc
Q 046587 494 WMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQF 573 (703)
Q Consensus 494 ~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 573 (703)
+..+|...-.++|+.|.+.++.... ++- ......+ ......++|+.|++++|+.+..+|..++.
T Consensus 737 ----------i~~lP~~~~l~~L~~L~l~~~~~~~-l~~---~~~~l~~--~~~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 737 ----------IEEFPSNLRLENLDELILCEMKSEK-LWE---RVQPLTP--LMTMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred ----------cccccccccccccccccccccchhh-ccc---cccccch--hhhhccccchheeCCCCCCccccChhhhC
Confidence 2222222112356666555543211 110 0000000 01222356999999999999999999989
Q ss_pred cCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEeccCCCCcccccccCCCCCcceEee
Q 046587 574 LEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSI 653 (703)
Q Consensus 574 ~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 653 (703)
+++|+.|+|++|..++.+|..+ ++++|+.|++++|..+..+|. .+++|+.|++++ +.++.+|..+..+++|+.|++
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCC-CCCccChHHHhcCCCCCEEEC
Confidence 9999999999999999999877 799999999999999998886 568999999998 578899999999999999999
Q ss_pred ccCCCcccCCCC-CCCCCcCeEEEecCCCCcccc
Q 046587 654 QLCRNLVSFPEE-GFPTSLTSLRIGDFKMYKTLV 686 (703)
Q Consensus 654 ~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~ 686 (703)
++|++++.+|.. ..+++|+.+++++|+.++.++
T Consensus 877 ~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 877 NGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 999999999876 347899999999999988554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.5e-27 Score=235.40 Aligned_cols=365 Identities=21% Similarity=0.257 Sum_probs=226.6
Q ss_pred CCcccEEecCCCCC--CccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEe
Q 046587 190 FRRLRMLSLQGYCI--GELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLD 267 (703)
Q Consensus 190 l~~Lr~L~L~~~~l--~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 267 (703)
++..|-.|+++|.+ ..+|..+..++.++.|.|..+.+..+|+.++.|.+|++|.+.+| .+..+..++..|+.||.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHh
Confidence 34566677777776 35677777777778888877777777877777888888888776 5666666677777777777
Q ss_pred ecCcccc-ccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccce
Q 046587 268 IRGAKLL-KEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALT 346 (703)
Q Consensus 268 l~~~~~~-~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 346 (703)
+..|+.- ..+|..|-++..|.+|+++.+...+.|
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP--------------------------------------------- 119 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP--------------------------------------------- 119 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcc---------------------------------------------
Confidence 7776422 346766767766666665444322221
Q ss_pred EEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCcccee
Q 046587 347 LDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHL 426 (703)
Q Consensus 347 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L 426 (703)
..+..-+++-.|++++|.+..+|..+.- .++.|-.|++++|.....+|....+.+|++|
T Consensus 120 --------------------~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 120 --------------------TNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred --------------------hhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 1222234555667777777778776654 4677788888888775555567778888888
Q ss_pred eecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCcccc
Q 046587 427 AVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTF 506 (703)
Q Consensus 427 ~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~ 506 (703)
.+++|+..- ..+. .+| ++.+|+.|.+++...
T Consensus 179 ~Ls~NPL~h-------------------------fQLr----QLP-smtsL~vLhms~TqR------------------- 209 (1255)
T KOG0444|consen 179 KLSNNPLNH-------------------------FQLR----QLP-SMTSLSVLHMSNTQR------------------- 209 (1255)
T ss_pred hcCCChhhH-------------------------HHHh----cCc-cchhhhhhhcccccc-------------------
Confidence 888876211 0000 111 244455555544331
Q ss_pred ccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCc
Q 046587 507 IARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCP 586 (703)
Q Consensus 507 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 586 (703)
....+|++ +.++.+|..++++.|...-. |.++-.+++|+.|++++|. ++.+....+...+|++|++++|
T Consensus 210 -Tl~N~Pts-----ld~l~NL~dvDlS~N~Lp~v---Pecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN- 278 (1255)
T KOG0444|consen 210 -TLDNIPTS-----LDDLHNLRDVDLSENNLPIV---PECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN- 278 (1255)
T ss_pred -hhhcCCCc-----hhhhhhhhhccccccCCCcc---hHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccc-
Confidence 11223333 33344555555555543321 1233444557777777763 3444333444556777777776
Q ss_pred CcccccccCCCCCCCcEEEecCCCCC-CccCCC-CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCC
Q 046587 587 ELESILDGLPNLKCLQSIYIWKCPSL-VSFPER-GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPE 664 (703)
Q Consensus 587 ~l~~~p~~~~~l~~L~~L~l~~c~~l-~~~~~~-~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~ 664 (703)
.++.+|+.+..+++|+.|.+.+|..- +-+|++ +-+.+|+.+...+ ++++-+|.++..|.+|+.|.+..| .+-.+|+
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~N-rLiTLPe 356 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHN-RLITLPE 356 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccccc-ceeechh
Confidence 56677777777777777777665321 334532 3355677777666 567777777777777777777776 6667777
Q ss_pred C-CCCCCcCeEEEecCCCCc
Q 046587 665 E-GFPTSLTSLRIGDFKMYK 683 (703)
Q Consensus 665 ~-~~~~~L~~L~i~~c~~l~ 683 (703)
+ .+++.|+.||++.||++-
T Consensus 357 aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhcCCcceeeccCCcCcc
Confidence 6 456777777777777764
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.9e-25 Score=219.43 Aligned_cols=362 Identities=18% Similarity=0.184 Sum_probs=238.4
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCcccc-ccccccccCc
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLP-ESTCTLLNLE 240 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~ 240 (703)
+.-++|.+.++. ..++...+|.++++|+.+.+..|.++.+|...+..-||+.|+|.+|.|.++. +++.-++.|+
T Consensus 78 ~~t~~LdlsnNk-----l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 78 SQTQTLDLSNNK-----LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred cceeeeeccccc-----cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 345678777765 3445556788999999999999999999987777888999999999998775 5678899999
Q ss_pred EEecCCCCCCcccCc-cccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEE
Q 046587 241 ILILRNCSRLIKLPP-KMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCM 319 (703)
Q Consensus 241 ~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i 319 (703)
+|||+.| .+.++|. .+..-.++++|+|++|.+..--...+..+.+|-+|.
T Consensus 153 slDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk---------------------------- 203 (873)
T KOG4194|consen 153 SLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK---------------------------- 203 (873)
T ss_pred hhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee----------------------------
Confidence 9999997 7888874 477778999999999964332222244444444443
Q ss_pred eCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCC
Q 046587 320 SGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSK 399 (703)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~ 399 (703)
++.|.+..+|...+. .+++
T Consensus 204 ------------------------------------------------------------LsrNrittLp~r~Fk-~L~~ 222 (873)
T KOG4194|consen 204 ------------------------------------------------------------LSRNRITTLPQRSFK-RLPK 222 (873)
T ss_pred ------------------------------------------------------------cccCcccccCHHHhh-hcch
Confidence 333444444433322 2556
Q ss_pred ccEEEEeccCCCCc-CCCCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCcc
Q 046587 400 MKVLKLENCHNCVS-LPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLE 478 (703)
Q Consensus 400 L~~L~l~~~~~~~~-l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~ 478 (703)
|+.|++..|.+-.. ...|.++++|+.|.+..|+.-+--...|++ +.+++.|+|+.+....+.....-++..|+
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~------l~kme~l~L~~N~l~~vn~g~lfgLt~L~ 296 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG------LEKMEHLNLETNRLQAVNEGWLFGLTSLE 296 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee------ecccceeecccchhhhhhcccccccchhh
Confidence 66666665554221 235666677777777666544333334444 66667766766666666544444577888
Q ss_pred EEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEE
Q 046587 479 TLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSI 558 (703)
Q Consensus 479 ~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 558 (703)
.|++++|. +..+..+. -+.|++|+.++++.|.+....+. ++..+..|++|.|
T Consensus 297 ~L~lS~Na-----------------I~rih~d~---------WsftqkL~~LdLs~N~i~~l~~~--sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 297 QLDLSYNA-----------------IQRIHIDS---------WSFTQKLKELDLSSNRITRLDEG--SFRVLSQLEELNL 348 (873)
T ss_pred hhccchhh-----------------hheeecch---------hhhcccceeEeccccccccCChh--HHHHHHHhhhhcc
Confidence 88888775 22222111 23466677777776666655544 6666677888888
Q ss_pred ecCCCCccc-cccccccCCccEEEeecCcCccccc---ccCCCCCCCcEEEecCCCCCCccCCCCC--CCCccEEEeccC
Q 046587 559 ENCPELTSL-SSGVQFLEALEFLEIRDCPELESIL---DGLPNLKCLQSIYIWKCPSLVSFPERGL--PNTISRVGIGEC 632 (703)
Q Consensus 559 ~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~p---~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c 632 (703)
++|. +..+ ...+..+++|++|+|++|..-..+. ..+.++++|+.|++.+| ++++++...+ +++|++|++.++
T Consensus 349 s~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 349 SHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 8874 3333 2334567788888888876554443 23666888888888776 6777776443 677888888876
Q ss_pred CCCcccccccCCCCCcceEeecc
Q 046587 633 DKLEALPNDLHKINSLRYLSIQL 655 (703)
Q Consensus 633 ~~l~~lp~~~~~l~~L~~L~l~~ 655 (703)
.....-|..|..+ .|++|-+..
T Consensus 427 aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 427 AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cceeecccccccc-hhhhhhhcc
Confidence 5444446666666 777776654
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=9.6e-27 Score=243.16 Aligned_cols=105 Identities=32% Similarity=0.448 Sum_probs=74.8
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEE
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHL 266 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 266 (703)
..+.-+|++|++++|.+..+|..+..+.+|+.|+++.|.|...|.+++++.+|++|.|.+| .+..+|.++..+++|++|
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYL 119 (1081)
T ss_pred hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccccc
Confidence 3344447778888777777777777777888888888877777777777788888888775 677777777778888888
Q ss_pred eecCccccccCCccCCCCCCCcccCee
Q 046587 267 DIRGAKLLKEMPFGMKELKNLQTLSNF 293 (703)
Q Consensus 267 ~l~~~~~~~~~p~~i~~l~~L~~L~~~ 293 (703)
+++.|. ...+|.-+..++.+..+...
T Consensus 120 dlS~N~-f~~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 120 DLSFNH-FGPIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred ccchhc-cCCCchhHHhhhHHHHHhhh
Confidence 887775 34555555555555554433
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.5e-24 Score=215.12 Aligned_cols=86 Identities=23% Similarity=0.266 Sum_probs=45.8
Q ss_pred CcccccEEEEecCCC-CccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCC-CCCCCCccE
Q 046587 549 SPVMLQHLSIENCPE-LTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPE-RGLPNTISR 626 (703)
Q Consensus 549 ~~~~L~~L~l~~~~~-l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~ 626 (703)
.+++|+.|.+.+|.. ...+|++++.+.+|+.+...+| +++-+|+++..+..|+.|.++.| .+..+|+ ..+++.|+.
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKV 366 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcce
Confidence 334455555555432 2355666666666666666654 56666666666666666666544 2333332 223444444
Q ss_pred EEeccCCCCc
Q 046587 627 VGIGECDKLE 636 (703)
Q Consensus 627 L~l~~c~~l~ 636 (703)
|++..++++.
T Consensus 367 LDlreNpnLV 376 (1255)
T KOG0444|consen 367 LDLRENPNLV 376 (1255)
T ss_pred eeccCCcCcc
Confidence 4444444443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1.9e-23 Score=218.78 Aligned_cols=457 Identities=20% Similarity=0.222 Sum_probs=282.2
Q ss_pred ccEEecCCCCCCccCcc-ccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCc
Q 046587 193 LRMLSLQGYCIGELPMS-FEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGA 271 (703)
Q Consensus 193 Lr~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 271 (703)
+..|+++.|.+-..|-. +.+..+|+.|++++|.+...|..|..+.+|+.|+++.| .+..+|..++++.+|++|.|.+|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccc
Confidence 78888888887665533 35566799999999999999999999999999999996 89999999999999999999998
Q ss_pred cccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCc-------eEEeCcccc----CChhchhhhhccccc
Q 046587 272 KLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDE-------LCMSGLENV----NNPQNAREATVCEKH 340 (703)
Q Consensus 272 ~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~-------l~i~~~~~~----~~~~~~~~~~l~~~~ 340 (703)
.+...|.++..+++|+.|++..+.....|..+..+.....+... +........ +.....+.. ...
T Consensus 102 -~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~---~i~ 177 (1081)
T KOG0618|consen 102 -RLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI---DIY 177 (1081)
T ss_pred -hhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc---chh
Confidence 48899999999999999999888877776666666554443211 000000000 000111111 111
Q ss_pred cccc-ceEEccCCCCCCCCchh-------hH-hhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCC
Q 046587 341 NLEA-LTLDWGSQFDNSRDGVV-------EE-HVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNC 411 (703)
Q Consensus 341 ~L~~-L~l~~~~~~~~~~~~~~-------~~-~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~ 411 (703)
+++. |+++++....-...... .. .....-..-++++.|+...|.....-.. +.-.+|++++++++...
T Consensus 178 ~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 178 NLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLS 254 (1081)
T ss_pred hhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc---cccccceeeecchhhhh
Confidence 2222 44443331100000000 00 0000001112333344433333221111 11356777777777664
Q ss_pred CcCCCCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCcccc
Q 046587 412 VSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIR 491 (703)
Q Consensus 412 ~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~ 491 (703)
....+++.+++|+.+.+.+|.. ..++..... ..+|+.|....+.+..+. ..++.+.+|++|++..|.
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~------~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~----- 321 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRL-VALPLRISR------ITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNN----- 321 (1081)
T ss_pred cchHHHHhcccceEecccchhH-HhhHHHHhh------hhhHHHHHhhhhhhhhCC-Ccccccceeeeeeehhcc-----
Confidence 4444667777777777766543 444333322 445555554444444443 334557888899888875
Q ss_pred ceeeEEEcCCCccccccccCC---CCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCcccc
Q 046587 492 AEWMLYIRDRDCLTFIARRRL---PASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLS 568 (703)
Q Consensus 492 ~~~~~~i~~~~~l~~~~~~~~---~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 568 (703)
+..+|...+ ..++..+.. +.+........ .-...+.|+.|++.+|.......
T Consensus 322 ------------L~~lp~~~l~v~~~~l~~ln~-----------s~n~l~~lp~~--~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 322 ------------LPSLPDNFLAVLNASLNTLNV-----------SSNKLSTLPSY--EENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred ------------ccccchHHHhhhhHHHHHHhh-----------hhccccccccc--cchhhHHHHHHHHhcCcccccch
Confidence 222222110 011211111 11111111000 11123349999999997766554
Q ss_pred ccccccCCccEEEeecCcCccccccc-CCCCCCCcEEEecCCCCCCccCCCCC-CCCccEEEeccCCCCcccccccCCCC
Q 046587 569 SGVQFLEALEFLEIRDCPELESILDG-LPNLKCLQSIYIWKCPSLVSFPERGL-PNTISRVGIGECDKLEALPNDLHKIN 646 (703)
Q Consensus 569 ~~~~~~~~L~~L~l~~c~~l~~~p~~-~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~lp~~~~~l~ 646 (703)
..+..+.+||.|++++| .+..+|+. +.++..|++|++++| ++..+|+... .+.|+.|...+ +.+..+| .+..++
T Consensus 377 p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~ 452 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLP 452 (1081)
T ss_pred hhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcC
Confidence 44557788999999998 56667754 778999999999998 7888886433 67799988877 6788898 788999
Q ss_pred CcceEeeccCCCcccCCCC-CCC-CCcCeEEEecCCCCccccccCcCCCCceeeEEe
Q 046587 647 SLRYLSIQLCRNLVSFPEE-GFP-TSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYI 701 (703)
Q Consensus 647 ~L~~L~l~~c~~l~~l~~~-~~~-~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l 701 (703)
+|+.+|++.| +|..+... ..| ++|+.||++||+.+. +....+..+.++...++
T Consensus 453 qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~-~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 453 QLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLV-FDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred cceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccc-cchhhhHHhhhhhheec
Confidence 9999999988 77765433 456 899999999998744 33333555566555544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.3e-15 Score=165.70 Aligned_cols=256 Identities=23% Similarity=0.243 Sum_probs=154.1
Q ss_pred CcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecC
Q 046587 191 RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRG 270 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 270 (703)
..-.+|+++++.++.+|..+. .+|+.|++.+|+++.+|.. +++|++|++++| .++.+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 346678899888888888775 4788889988888888753 467888888886 66677752 35677777776
Q ss_pred ccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEcc
Q 046587 271 AKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWG 350 (703)
Q Consensus 271 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 350 (703)
|. +..+|...
T Consensus 272 N~-L~~Lp~lp--------------------------------------------------------------------- 281 (788)
T PRK15387 272 NP-LTHLPALP--------------------------------------------------------------------- 281 (788)
T ss_pred Cc-hhhhhhch---------------------------------------------------------------------
Confidence 64 33333211
Q ss_pred CCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecc
Q 046587 351 SQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKG 430 (703)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~ 430 (703)
..|+.|++.+|....+|.. +++|+.|++++|.... +|.+ .++|+.|++.+
T Consensus 282 ----------------------~~L~~L~Ls~N~Lt~LP~~-----p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~ 331 (788)
T PRK15387 282 ----------------------SGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLAS-LPAL--PSELCKLWAYN 331 (788)
T ss_pred ----------------------hhcCEEECcCCcccccccc-----ccccceeECCCCcccc-CCCC--ccccccccccc
Confidence 1223333444444444431 3567777777775533 3321 23455666555
Q ss_pred cccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCcccccccc
Q 046587 431 LKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARR 510 (703)
Q Consensus 431 ~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~ 510 (703)
|. +. .+|...++|+.|++++|. +..+|.
T Consensus 332 N~------------------------------L~----~LP~lp~~Lq~LdLS~N~-----------------Ls~LP~- 359 (788)
T PRK15387 332 NQ------------------------------LT----SLPTLPSGLQELSVSDNQ-----------------LASLPT- 359 (788)
T ss_pred Cc------------------------------cc----cccccccccceEecCCCc-----------------cCCCCC-
Confidence 43 11 122222467777777764 222221
Q ss_pred CCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCccc
Q 046587 511 RLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELES 590 (703)
Q Consensus 511 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 590 (703)
+|.+ |+.|++++|. +..+|.. +++|+.|++++| .++.
T Consensus 360 -lp~~-------------------------------------L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N-~Lt~ 396 (788)
T PRK15387 360 -LPSE-------------------------------------LYKLWAYNNR-LTSLPAL---PSGLKELIVSGN-RLTS 396 (788)
T ss_pred -CCcc-------------------------------------cceehhhccc-cccCccc---ccccceEEecCC-cccC
Confidence 1112 4445555442 3344432 345777777776 3445
Q ss_pred ccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCC
Q 046587 591 ILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCR 657 (703)
Q Consensus 591 ~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 657 (703)
+|.. .++|+.|++++| .+..+|. .+.+|+.|++++ +.++.+|..+.++++|+.|++++|+
T Consensus 397 LP~l---~s~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 397 LPVL---PSELKELMVSGN-RLTSLPM--LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCc---ccCCCEEEccCC-cCCCCCc--chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 6543 256777888777 4556664 456778888877 4577888888888888888888885
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=3.5e-15 Score=162.45 Aligned_cols=237 Identities=23% Similarity=0.234 Sum_probs=159.2
Q ss_pred CCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecccccceeecccccCCCcccCCCc
Q 046587 373 KCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 452 (703)
Q Consensus 373 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~ 452 (703)
++++.|.+.+|....+|.. .++|++|++++|... .+|.+ .++|+.|++.+|. ++.++. .+.+
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l-----p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L~~Lp~---------lp~~ 283 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL-----PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-LTHLPA---------LPSG 283 (788)
T ss_pred cCCCEEEccCCcCCCCCCC-----CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-hhhhhh---------chhh
Confidence 4788888888888887752 478888888888664 44532 4688888888774 444432 1446
Q ss_pred cceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccc
Q 046587 453 LEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFD 532 (703)
Q Consensus 453 L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 532 (703)
|+.|.+..+.+.. +|..+++|+.|++++|. +..++ .+|..|+.|.++
T Consensus 284 L~~L~Ls~N~Lt~----LP~~p~~L~~LdLS~N~-----------------L~~Lp--~lp~~L~~L~Ls---------- 330 (788)
T PRK15387 284 LCKLWIFGNQLTS----LPVLPPGLQELSVSDNQ-----------------LASLP--ALPSELCKLWAY---------- 330 (788)
T ss_pred cCEEECcCCcccc----ccccccccceeECCCCc-----------------cccCC--CCcccccccccc----------
Confidence 6676655554443 34456788888888875 22222 133344444443
Q ss_pred cccccCCCCCCCCCCCCc-ccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCC
Q 046587 533 DEEDASSSSPSPASSSSP-VMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPS 611 (703)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~ 611 (703)
.|.+.. +|.+ .+|++|++++| .++.+|.. +++|+.|++++| .+..+|... ++|+.|++++| .
T Consensus 331 -~N~L~~-------LP~lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~l~---~~L~~LdLs~N-~ 393 (788)
T PRK15387 331 -NNQLTS-------LPTLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPALP---SGLKELIVSGN-R 393 (788)
T ss_pred -cCcccc-------ccccccccceEecCCC-ccCCCCCC---Ccccceehhhcc-ccccCcccc---cccceEEecCC-c
Confidence 343332 2222 25899999887 45567653 467888899887 455677543 57889999888 5
Q ss_pred CCccCCCCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCCCcCeEEEecCCCCcc
Q 046587 612 LVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPTSLTSLRIGDFKMYKT 684 (703)
Q Consensus 612 l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~ 684 (703)
+..+|. .+++|+.|++++| .++.+|.. ..+|+.|++++| .++.+|.. +.+++|+.|++++|+.-..
T Consensus 394 Lt~LP~--l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 394 LTSLPV--LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccCCCC--cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCch
Confidence 666765 4678999999985 47778864 356888999998 78888865 3467899999999875544
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=3e-17 Score=156.52 Aligned_cols=113 Identities=24% Similarity=0.273 Sum_probs=70.3
Q ss_pred chhhhhhhhcCCCcccEEecCCCCCCcc-CccccCCCcCceEeccC-CCCcccccc-ccccccCcEEecCCCCCCcccCc
Q 046587 179 PRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLAD-TDIRSLPES-TCTLLNLEILILRNCSRLIKLPP 255 (703)
Q Consensus 179 ~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~-~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~ 255 (703)
...+++++|+.+++||+|||++|.|+.+ |++|..+..|-.|-+.+ |+|+.+|+. |++|..|+.|.+..|...-...+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 3455666677777777777777777666 66676776666665554 667777643 56677777777766533333334
Q ss_pred cccCCCcccEEeecCccccccCCc-cCCCCCCCcccCe
Q 046587 256 KMRNLINLRHLDIRGAKLLKEMPF-GMKELKNLQTLSN 292 (703)
Q Consensus 256 ~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~ 292 (703)
.+..|++|..|.+.+|. .+.++. .+..+..++++.+
T Consensus 159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HHHHhhhcchhcccchh-hhhhccccccchhccchHhh
Confidence 56677777777776663 445554 3556666666654
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=4.9e-17 Score=155.09 Aligned_cols=404 Identities=15% Similarity=0.145 Sum_probs=206.2
Q ss_pred ccchhhhhhhhcCCCcccEEecCCCCCCccCc-cccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccC
Q 046587 177 YIPRTVLSDLLPKFRRLRMLSLQGYCIGELPM-SFEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLP 254 (703)
Q Consensus 177 ~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp 254 (703)
.+|...++ .-..++|..|.|+.+|+ +|+.+++||.|||+.|.|+.| |..|.+|.+|..|-+.++..++.+|
T Consensus 60 eVP~~LP~-------~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 60 EVPANLPP-------ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred cCcccCCC-------cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 44555554 34668999999999965 789999999999999999976 7889999999999998866899999
Q ss_pred cc-ccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCC-ChhhhhhhhccCCc----eEEeCccccCCh
Q 046587 255 PK-MRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETAS-GLEDLKCLNFLCDE----LCMSGLENVNNP 328 (703)
Q Consensus 255 ~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~-~~~~L~~L~~L~~~----l~i~~~~~~~~~ 328 (703)
.+ |++|..|+.|.+.-|+..-.....+..+++|..|.++.+.....+. .+..+..++.+... .+..++.+....
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 65 8999999999998886433334448899999999988876655433 34444444433211 111111111111
Q ss_pred hchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcc-cCCCCCCCccEEEEec
Q 046587 329 QNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHW-IGDPSFSKMKVLKLEN 407 (703)
Q Consensus 329 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~ 407 (703)
....+...++........+.+.. ........+.+.+... ...+....+.....|.. +. .+++|+.|++++
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~R-----i~q~~a~kf~c~~esl--~s~~~~~d~~d~~cP~~cf~--~L~~L~~lnlsn 283 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKR-----INQEDARKFLCSLESL--PSRLSSEDFPDSICPAKCFK--KLPNLRKLNLSN 283 (498)
T ss_pred HhhchhhcccceecchHHHHHHH-----hcccchhhhhhhHHhH--HHhhccccCcCCcChHHHHh--hcccceEeccCC
Confidence 11111111111111111111000 0000000000000000 00000011111111111 11 256666666666
Q ss_pred cCCCCcCC-CCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCC
Q 046587 408 CHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCK 486 (703)
Q Consensus 408 ~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 486 (703)
|.....-+ +|..+..++.|.+..|. ++.+... ....+..|+.|+|+-+.++.+.......+.+|.+|++-.|+
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~-----~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNK-LEFVSSG-----MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcch-HHHHHHH-----hhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 66544333 46666666666666554 2222111 11225556666666555555543334456677788887777
Q ss_pred Cccccceee--EEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCC
Q 046587 487 KLFIRAEWM--LYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPEL 564 (703)
Q Consensus 487 ~l~~~~~~~--~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 564 (703)
....|...+ -++..-. ....|.=+-|..++.+.+++...=+ ..-+.+......+.....+.++-+.+..=..+..+
T Consensus 358 ~~CnC~l~wl~~Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~-~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l 435 (498)
T KOG4237|consen 358 FNCNCRLAWLGEWLRKKS-VVGNPRCQSPGFVRQIPISDVAFGD-FRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL 435 (498)
T ss_pred ccCccchHHHHHHHhhCC-CCCCCCCCCCchhccccchhccccc-cccCCccccCCCCCCCCCCCcchhhhhHhhcccch
Confidence 543321100 0000000 1111111233445555554432111 11111111111122223334444555444455566
Q ss_pred ccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCC
Q 046587 565 TSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCP 610 (703)
Q Consensus 565 ~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~ 610 (703)
+.+|..+ +..-.+|++.+| .++.+|.+ .+.+| .+++++|+
T Consensus 436 k~lp~~i--P~d~telyl~gn-~~~~vp~~--~~~~l-~~dls~n~ 475 (498)
T KOG4237|consen 436 KLLPRGI--PVDVTELYLDGN-AITSVPDE--LLRSL-LLDLSNNR 475 (498)
T ss_pred hhcCCCC--CchhHHHhcccc-hhcccCHH--HHhhh-hcccccCc
Confidence 7777663 456777888887 45567766 56666 77777663
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=5e-14 Score=154.61 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=66.1
Q ss_pred CcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecC
Q 046587 191 RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRG 270 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 270 (703)
.+..+|+++++.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 457889999999999997764 589999999999999998765 58999999997 6778887654 4789999998
Q ss_pred ccccccCCccC
Q 046587 271 AKLLKEMPFGM 281 (703)
Q Consensus 271 ~~~~~~~p~~i 281 (703)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 85 44566443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=7.4e-14 Score=153.29 Aligned_cols=118 Identities=28% Similarity=0.401 Sum_probs=72.0
Q ss_pred cccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEecc
Q 046587 552 MLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGE 631 (703)
Q Consensus 552 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 631 (703)
+|+.|++++|. +..+|... +++|+.|++++| .++.+|..+. ++|+.|++++| .+..+|. .++++|+.|++++
T Consensus 305 sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~ 376 (754)
T PRK15370 305 GITHLNVQSNS-LTALPETL--PPGLKTLEAGEN-ALTSLPASLP--PELQVLDVSKN-QITVLPE-TLPPTITTLDVSR 376 (754)
T ss_pred hHHHHHhcCCc-cccCCccc--cccceeccccCC-ccccCChhhc--CcccEEECCCC-CCCcCCh-hhcCCcCEEECCC
Confidence 36677777663 34455432 356777777776 3455665543 57777777776 3555554 3456777777777
Q ss_pred CCCCcccccccCCCCCcceEeeccCCCcccCCCC-----CCCCCcCeEEEecCCC
Q 046587 632 CDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-----GFPTSLTSLRIGDFKM 681 (703)
Q Consensus 632 c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~~ 681 (703)
| .++.+|..+. .+|+.|++++| ++..+|.. +..+++..|++.+|+.
T Consensus 377 N-~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 377 N-ALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred C-cCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 5 4666666543 35777777777 66666643 1135667777777763
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=6.4e-16 Score=130.27 Aligned_cols=103 Identities=26% Similarity=0.356 Sum_probs=79.3
Q ss_pred CCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEee
Q 046587 189 KFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDI 268 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 268 (703)
.+.++..|-|++|.++.+|+.|..+.+|++|++.+|+|+++|.+++.+++|++|+++-| .+..+|.+||.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 45567778888888888888888888888888888888888888888888888888876 67788888888888888888
Q ss_pred cCcccc-ccCCccCCCCCCCcccCe
Q 046587 269 RGAKLL-KEMPFGMKELKNLQTLSN 292 (703)
Q Consensus 269 ~~~~~~-~~~p~~i~~l~~L~~L~~ 292 (703)
..|... ..+|..+--++.|+.|++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHh
Confidence 777533 345555555555555544
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.41 E-value=2.9e-13 Score=151.06 Aligned_cols=106 Identities=30% Similarity=0.391 Sum_probs=86.7
Q ss_pred CCcccEEecCCCC--CCccCcc-ccCCCcCceEeccCC-CCccccccccccccCcEEecCCCCCCcccCccccCCCcccE
Q 046587 190 FRRLRMLSLQGYC--IGELPMS-FEDLRLLRLLNLADT-DIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRH 265 (703)
Q Consensus 190 l~~Lr~L~L~~~~--l~~lp~~-i~~l~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 265 (703)
.+.|+.|-+.++. +..++.. |..++.||+|||++| .+.++|++|+.|.+||+|++++ +.+..+|.++++|++|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhhe
Confidence 3468888888886 6666543 678999999999977 6779999999999999999999 488899999999999999
Q ss_pred EeecCccccccCCccCCCCCCCcccCeeEee
Q 046587 266 LDIRGAKLLKEMPFGMKELKNLQTLSNFIVG 296 (703)
Q Consensus 266 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 296 (703)
|++..+.....+|..+..|++||+|.++...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 9999887666666556669999998876554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=8.6e-15 Score=123.56 Aligned_cols=149 Identities=26% Similarity=0.305 Sum_probs=120.8
Q ss_pred ccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccc
Q 046587 158 FNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLL 237 (703)
Q Consensus 158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 237 (703)
+-.+++...|.+.++. ....+.-+..+++|++|++++|+++++|.+++.+.+||.|++.-|.+..+|..||.++
T Consensus 29 Lf~~s~ITrLtLSHNK------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCc------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 3345555666666654 2223334678899999999999999999999999999999999999999999999999
Q ss_pred cCcEEecCCCCC-CcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhcc
Q 046587 238 NLEILILRNCSR-LIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFL 313 (703)
Q Consensus 238 ~L~~L~L~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L 313 (703)
-|++|||.+|.. -..+|..|..|+.|+.|++++|. -..+|..++++++||.|.+..+...+.|..++.+..|+++
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence 999999998632 23688889999999999999996 5778889999999999988877777777777777777655
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=4.5e-12 Score=129.55 Aligned_cols=87 Identities=23% Similarity=0.255 Sum_probs=47.0
Q ss_pred hhcCCCcccEEecCCCCCC-----ccCccccCCCcCceEeccCCCCcc-------ccccccccccCcEEecCCCCCCccc
Q 046587 186 LLPKFRRLRMLSLQGYCIG-----ELPMSFEDLRLLRLLNLADTDIRS-------LPESTCTLLNLEILILRNCSRLIKL 253 (703)
Q Consensus 186 ~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~~l 253 (703)
.+..+..|++|+++++.++ .++..+...++|++|+++++.+.. ++..+.++.+|+.|++++|......
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 3445555777777776652 234445555666677666665442 2234455666666666665433333
Q ss_pred CccccCCCc---ccEEeecCcc
Q 046587 254 PPKMRNLIN---LRHLDIRGAK 272 (703)
Q Consensus 254 p~~i~~L~~---L~~L~l~~~~ 272 (703)
+..+..+.+ |++|++++|.
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCc
Confidence 333433333 6666666653
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=4.3e-12 Score=129.67 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=55.7
Q ss_pred EecCCCCCC--ccCccccCCCcCceEeccCCCCc-----cccccccccccCcEEecCCCCCC------cccCccccCCCc
Q 046587 196 LSLQGYCIG--ELPMSFEDLRLLRLLNLADTDIR-----SLPESTCTLLNLEILILRNCSRL------IKLPPKMRNLIN 262 (703)
Q Consensus 196 L~L~~~~l~--~lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l------~~lp~~i~~L~~ 262 (703)
|+|.++.+. ..+..+..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..+.++++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 556666552 33455567778999999999884 45666778888999999886432 123345677889
Q ss_pred ccEEeecCcccc
Q 046587 263 LRHLDIRGAKLL 274 (703)
Q Consensus 263 L~~L~l~~~~~~ 274 (703)
|+.|++++|...
T Consensus 83 L~~L~l~~~~~~ 94 (319)
T cd00116 83 LQELDLSDNALG 94 (319)
T ss_pred eeEEEccCCCCC
Confidence 999999888644
No 25
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.83 E-value=4.6e-10 Score=112.56 Aligned_cols=70 Identities=36% Similarity=0.730 Sum_probs=57.3
Q ss_pred hHHHHHHHhhcCcCCCC----CCCchHHHHHhhccCchhhhhHhhhhcCCCCCCccCHHHHHHHHHHCCCCccC
Q 046587 3 HDAWDDILDSKIWDLPQ----QSGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQS 72 (703)
Q Consensus 3 ~~~W~~~l~~~~~~~~~----~~~i~~~L~lSYd~L~~~~K~cFL~~a~fp~~~~i~~~~Li~~wi~~g~~~~~ 72 (703)
.++|++++++..+...+ ...++.++++||+.||+++|.||+|||+||+++.|+++.|+++|+++||+...
T Consensus 212 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 212 VDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 46799988754433321 36799999999999999999999999999999999999999999999999764
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=7.9e-09 Score=92.33 Aligned_cols=128 Identities=26% Similarity=0.343 Sum_probs=51.4
Q ss_pred ccCCCceeEeeeccCCCCcccchhhhhhhhc-CCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccc-cc
Q 046587 158 FNEIEHLRTFLPLHERRGYYIPRTVLSDLLP-KFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPEST-CT 235 (703)
Q Consensus 158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~ 235 (703)
+.+..++|.|.+.++. ...+ .. ++ .+.+|++|++++|.++.++ .+..+++|++|++++|.|+.++..+ ..
T Consensus 15 ~~n~~~~~~L~L~~n~-----I~~I-e~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ-----ISTI-EN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ---------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccc-----cccc-cc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 3344566777776654 1111 11 33 4678999999999998886 5788999999999999999887655 46
Q ss_pred cccCcEEecCCCCCCcccCc--cccCCCcccEEeecCccccccCCc----cCCCCCCCcccCeeEe
Q 046587 236 LLNLEILILRNCSRLIKLPP--KMRNLINLRHLDIRGAKLLKEMPF----GMKELKNLQTLSNFIV 295 (703)
Q Consensus 236 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~ 295 (703)
+++|++|++++| .+..+.. .+..+++|++|++.+|+.... +. .+..+++|+.|+...+
T Consensus 87 lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 899999999997 5555443 367889999999999975432 21 2667888888875444
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.72 E-value=4.5e-08 Score=98.19 Aligned_cols=113 Identities=30% Similarity=0.489 Sum_probs=72.7
Q ss_pred cccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEecc
Q 046587 552 MLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGE 631 (703)
Q Consensus 552 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 631 (703)
+|++|.+++|..+..+|..+ +++|+.|++++|..+..+|. +|+.|++.++ ....++ .+|++|+.|.+.+
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n-~~~~L~--~LPssLk~L~I~~ 141 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGS-ATDSIK--NVPNGLTSLSINS 141 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCC-CCcccc--cCcchHhheeccc
Confidence 38889998888888887653 56889999988877777764 3566666543 333332 2566777777754
Q ss_pred CCCC--cccccccCCCCCcceEeeccCCCcccCCCCCCCCCcCeEEEecC
Q 046587 632 CDKL--EALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDF 679 (703)
Q Consensus 632 c~~l--~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c 679 (703)
++.. ..+|. .--++|++|++++|..+ .+| .++|.+|+.|+++.|
T Consensus 142 ~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP-~~LP~SLk~L~ls~n 187 (426)
T PRK15386 142 YNPENQARIDN--LISPSLKTLSLTGCSNI-ILP-EKLPESLQSITLHIE 187 (426)
T ss_pred ccccccccccc--ccCCcccEEEecCCCcc-cCc-ccccccCcEEEeccc
Confidence 3322 11121 11257888888888544 344 357788888888765
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=5.2e-10 Score=112.78 Aligned_cols=106 Identities=29% Similarity=0.489 Sum_probs=77.5
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEE
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHL 266 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 266 (703)
+..+..|..+.|..|.+..+|..++++..|.||+|+.|++..+|..++.|+ |++|-+++| .++.+|.+|+.+..|.+|
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHh
Confidence 344556777777777777777777888888888888888877777776664 777777775 677777777777778888
Q ss_pred eecCccccccCCccCCCCCCCcccCeeEe
Q 046587 267 DIRGAKLLKEMPFGMKELKNLQTLSNFIV 295 (703)
Q Consensus 267 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 295 (703)
|.+.|. +..+|..++.+++|+.|.+..+
T Consensus 172 d~s~ne-i~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 172 DVSKNE-IQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred hhhhhh-hhhchHHhhhHHHHHHHHHhhh
Confidence 877774 5667777777777777765433
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=4.1e-09 Score=94.14 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=29.1
Q ss_pred CccEEEeecCcCcccccccCC-CCCCCcEEEecCCCCCCccCCCCCCCCccEEEeccCCCCccccccc-CCCCCcceEee
Q 046587 576 ALEFLEIRDCPELESILDGLP-NLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDL-HKINSLRYLSI 653 (703)
Q Consensus 576 ~L~~L~l~~c~~l~~~p~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l 653 (703)
++++|+|.+| .+..+ +.+. .+++|+.|++++| .+..+.....++.|+.|++++ +.++.++.++ ..+++|++|++
T Consensus 20 ~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccc-ccccc-cchhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCccccchHHhCCcCCEEEC
Confidence 3444555444 22223 2232 3444555555444 333343333344455555544 3344443322 23555555555
Q ss_pred ccCCCcccCCCC---CCCCCcCeEEEecCCCCcccc--ccCcCCCCceeeEE
Q 046587 654 QLCRNLVSFPEE---GFPTSLTSLRIGDFKMYKTLV--QWGLHRLTSLGRLY 700 (703)
Q Consensus 654 ~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l~~~~--~~~l~~l~~L~~L~ 700 (703)
++| ++.++..- ..+++|+.|++.+||....-. .+.+..+|+|+.||
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 555 44444322 124555555555555432100 12244555555554
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.5e-08 Score=106.66 Aligned_cols=107 Identities=33% Similarity=0.420 Sum_probs=90.3
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCC-cCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccE
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLR-LLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRH 265 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 265 (703)
...+..++.|++.++.+.++|.....+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 3445789999999999999998888885 999999999999999888999999999999997 78888887779999999
Q ss_pred EeecCccccccCCccCCCCCCCcccCeeEe
Q 046587 266 LDIRGAKLLKEMPFGMKELKNLQTLSNFIV 295 (703)
Q Consensus 266 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 295 (703)
|++++|. +..+|..++....|+++....+
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCC
Confidence 9999995 6778877666777887776554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.9e-09 Score=102.07 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=104.7
Q ss_pred cCCceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccc--cC
Q 046587 135 RFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSF--ED 212 (703)
Q Consensus 135 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i--~~ 212 (703)
..+++|.+++..........-.....++++|.|.+..+-- ..-.....+...+++|+.|+++.|.+...-++. ..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~---~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF---HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhH---HhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3566777777776544332224556788999998876541 111223455678899999999999875443222 46
Q ss_pred CCcCceEeccCCCCc--cccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCc--cCCCCCCCc
Q 046587 213 LRLLRLLNLADTDIR--SLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPF--GMKELKNLQ 288 (703)
Q Consensus 213 l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~ 288 (703)
+.+|+.|.|+.|.++ .+......+++|+.|+|.+|..+..-.....-+..|+.|||++|.. ...+. .++.++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchh
Confidence 788999999999887 4434456788999999999854433333355788899999999864 34442 266677777
Q ss_pred ccCeeEeec
Q 046587 289 TLSNFIVGK 297 (703)
Q Consensus 289 ~L~~~~~~~ 297 (703)
.|.+..++.
T Consensus 275 ~Lnls~tgi 283 (505)
T KOG3207|consen 275 QLNLSSTGI 283 (505)
T ss_pred hhhccccCc
Confidence 776554443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=1.2e-09 Score=110.12 Aligned_cols=194 Identities=23% Similarity=0.214 Sum_probs=144.9
Q ss_pred CCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeec
Q 046587 190 FRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIR 269 (703)
Q Consensus 190 l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 269 (703)
+..-...||+.|++..+|..++.+..|+.+.|..|.+..+|..+++|..|.+|||+.| .+..+|..+..| -|+.|-++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEe
Confidence 3445668999999999999999999999999999999999999999999999999997 789999988877 48999999
Q ss_pred CccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587 270 GAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDW 349 (703)
Q Consensus 270 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 349 (703)
+|+ ++.+|.+|+.+..|..|+...+.....+..+..+..|+.+. ++.
T Consensus 152 NNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~--------------------------------vrR 198 (722)
T KOG0532|consen 152 NNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN--------------------------------VRR 198 (722)
T ss_pred cCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH--------------------------------Hhh
Confidence 985 78999999988899999887777777766666666655442 110
Q ss_pred cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCC---CCCcCcccee
Q 046587 350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPS---LGLLSSLKHL 426 (703)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~---l~~l~~L~~L 426 (703)
+. -..+.+.+. .-.|..|++++|.+..+|..+.. |+.|++|.|.+|........ -|..-=-|+|
T Consensus 199 n~----------l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 199 NH----------LEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYL 265 (722)
T ss_pred hh----------hhhCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCCCChHHHHhccceeeeeee
Confidence 00 001111111 22466778888888888888876 88999999998887432221 2333334666
Q ss_pred eeccc
Q 046587 427 AVKGL 431 (703)
Q Consensus 427 ~l~~~ 431 (703)
+..-|
T Consensus 266 ~~qA~ 270 (722)
T KOG0532|consen 266 STQAC 270 (722)
T ss_pred cchhc
Confidence 66665
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.66 E-value=1e-07 Score=95.65 Aligned_cols=160 Identities=23% Similarity=0.439 Sum_probs=104.1
Q ss_pred CCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccc
Q 046587 474 LPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVML 553 (703)
Q Consensus 474 l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L 553 (703)
+++++.|++++|. +.++| .+|++|+.|.+++|.+|+.+-- .+| ++|
T Consensus 51 ~~~l~~L~Is~c~-----------------L~sLP--~LP~sLtsL~Lsnc~nLtsLP~-------------~LP--~nL 96 (426)
T PRK15386 51 ARASGRLYIKDCD-----------------IESLP--VLPNELTEITIENCNNLTTLPG-------------SIP--EGL 96 (426)
T ss_pred hcCCCEEEeCCCC-----------------CcccC--CCCCCCcEEEccCCCCcccCCc-------------hhh--hhh
Confidence 4678888888884 45555 5788899999999988874310 222 359
Q ss_pred cEEEEecCCCCccccccccccCCccEEEeecCc--CcccccccCCCCCCCcEEEecCCCCCCccC-CCCCCCCccEEEec
Q 046587 554 QHLSIENCPELTSLSSGVQFLEALEFLEIRDCP--ELESILDGLPNLKCLQSIYIWKCPSLVSFP-ERGLPNTISRVGIG 630 (703)
Q Consensus 554 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~--~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~L~~L~l~ 630 (703)
++|.+++|..+..+| ++|+.|++..+. .+..+|. +|+.|.+.++......+ ...+|++|+.|+++
T Consensus 97 e~L~Ls~Cs~L~sLP------~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is 164 (426)
T PRK15386 97 EKLTVCHCPEISGLP------ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLT 164 (426)
T ss_pred hheEccCcccccccc------cccceEEeCCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEec
Confidence 999999997776554 457778876532 2444443 46677775433221111 12467889999999
Q ss_pred cCCCCcccccccCCCCCcceEeeccCCCc-ccCCCCCCCCCcCeEEEecCCCCc
Q 046587 631 ECDKLEALPNDLHKINSLRYLSIQLCRNL-VSFPEEGFPTSLTSLRIGDFKMYK 683 (703)
Q Consensus 631 ~c~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~~~L~~L~i~~c~~l~ 683 (703)
+|..+. +|..+. .+|+.|.++.+... -.++...+|+++ .|++.+|-.+.
T Consensus 165 ~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 165 GCSNII-LPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred CCCccc-Cccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccC
Confidence 988553 454433 58999998876311 134555677788 88888875543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=2e-08 Score=93.33 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=104.4
Q ss_pred CCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCC-C
Q 046587 542 PSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERG-L 620 (703)
Q Consensus 542 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~-~ 620 (703)
+....++.+..|+++++++| .++.+.......+.++.|+++.|... .+ ..++.+++|+.|++++| .+..+.+.. -
T Consensus 275 ~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 275 SALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGN-LLAECVGWHLK 350 (490)
T ss_pred ceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccc-hhHhhhhhHhh
Confidence 33346677777999999998 56677777778899999999998654 44 45889999999999998 455544322 2
Q ss_pred CCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC---CCCCCcCeEEEecCCCCc
Q 046587 621 PNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE---GFPTSLTSLRIGDFKMYK 683 (703)
Q Consensus 621 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l~ 683 (703)
+.+.+.|.+++ +.++.+ ++++.+-+|..|++++| +++.+..- |.+|.|+++.+.+||.-.
T Consensus 351 LGNIKtL~La~-N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 351 LGNIKTLKLAQ-NKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hcCEeeeehhh-hhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCccc
Confidence 67899999998 567777 57889999999999999 77665432 568899999999998544
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=1.9e-07 Score=102.93 Aligned_cols=93 Identities=28% Similarity=0.404 Sum_probs=81.4
Q ss_pred cccEEecCCCCC-CccCccccCCCcCceEeccCCCCc-cccccccccccCcEEecCCCCCCcccCccccCCCcccEEeec
Q 046587 192 RLRMLSLQGYCI-GELPMSFEDLRLLRLLNLADTDIR-SLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIR 269 (703)
Q Consensus 192 ~Lr~L~L~~~~l-~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 269 (703)
.++.|+|+++.+ ..+|..++.+.+|++|+|++|.+. .+|..++.+.+|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 378899999987 467889999999999999999987 888899999999999999986666889989999999999999
Q ss_pred CccccccCCccCCCC
Q 046587 270 GAKLLKEMPFGMKEL 284 (703)
Q Consensus 270 ~~~~~~~~p~~i~~l 284 (703)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 998778888877653
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.45 E-value=1.8e-07 Score=68.31 Aligned_cols=56 Identities=34% Similarity=0.485 Sum_probs=31.2
Q ss_pred cccEEecCCCCCCccC-ccccCCCcCceEeccCCCCccccc-cccccccCcEEecCCC
Q 046587 192 RLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNC 247 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 247 (703)
+|++|++++|.+..+| ..|..+++|++|++++|.++.+|+ .|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555666666655554 344555566666666555555543 3455555555555554
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.9e-08 Score=98.53 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=34.3
Q ss_pred ccccEEEEecCCCCccccccccccCCccEEEeecCcCccccc--ccCCCCCCCcEEEecCC
Q 046587 551 VMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESIL--DGLPNLKCLQSIYIWKC 609 (703)
Q Consensus 551 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p--~~~~~l~~L~~L~l~~c 609 (703)
|+|+.|.+..|..+..-......+..|++|+|++|+.+. .+ .....|+.|+.|+++.|
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhcccc
Confidence 336777777664333222223345667788888775543 33 33566777777777776
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=2e-07 Score=98.15 Aligned_cols=124 Identities=28% Similarity=0.402 Sum_probs=98.3
Q ss_pred CCCceeEeeeccCCCCcccchhhhhhhhcCCC-cccEEecCCCCCCccCccccCCCcCceEeccCCCCcccccccccccc
Q 046587 160 EIEHLRTFLPLHERRGYYIPRTVLSDLLPKFR-RLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLN 238 (703)
Q Consensus 160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 238 (703)
..+.+..|.+.++. ..-.+.....+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+.+
T Consensus 114 ~~~~l~~L~l~~n~------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 114 ELTNLTSLDLDNNN------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred cccceeEEecCCcc------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhh
Confidence 44667777776654 111223334453 89999999999999988899999999999999999999998889999
Q ss_pred CcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccC
Q 046587 239 LEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLS 291 (703)
Q Consensus 239 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 291 (703)
|+.|++++| .+..+|..++.+..|++|.+++|. ....+..+..++++..+.
T Consensus 188 L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 188 LNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 999999997 789999978888889999999985 344555566666666554
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=3.5e-09 Score=103.05 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=19.3
Q ss_pred CCCccEEEEeccCCCCcCC--C-CCCcCccceeeeccccccee
Q 046587 397 FSKMKVLKLENCHNCVSLP--S-LGLLSSLKHLAVKGLKKLKS 436 (703)
Q Consensus 397 ~~~L~~L~l~~~~~~~~l~--~-l~~l~~L~~L~l~~~~~l~~ 436 (703)
++++++|.+.+|....+-. . -..+++|++|.+..|..++.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 4555555555555433222 1 12345555555555554443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=4.2e-07 Score=66.39 Aligned_cols=58 Identities=36% Similarity=0.500 Sum_probs=50.8
Q ss_pred CcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccC-ccccCCCcccEEeecCcc
Q 046587 214 RLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIRGAK 272 (703)
Q Consensus 214 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 272 (703)
++|++|++++|.++.+|. .+.++++|++|++++| .+..+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999985 6789999999999997 566666 468999999999999985
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=7.1e-08 Score=89.77 Aligned_cols=79 Identities=25% Similarity=0.256 Sum_probs=42.4
Q ss_pred CcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecC
Q 046587 191 RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRG 270 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 270 (703)
+.|+.+||++|.|+.+..+..-++.+|.|++++|.|..+. .+..|.+|+.|||++| .+.++-..=.+|-+.++|.+++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh
Confidence 3455556666655555555555555666666666555552 2555555666666554 3333333333455555555555
Q ss_pred c
Q 046587 271 A 271 (703)
Q Consensus 271 ~ 271 (703)
|
T Consensus 362 N 362 (490)
T KOG1259|consen 362 N 362 (490)
T ss_pred h
Confidence 5
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=1.1e-06 Score=96.86 Aligned_cols=110 Identities=23% Similarity=0.334 Sum_probs=88.7
Q ss_pred eeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCC-ccCccccCCCcCceEeccCCCCc-cccccccccccCcE
Q 046587 164 LRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIG-ELPMSFEDLRLLRLLNLADTDIR-SLPESTCTLLNLEI 241 (703)
Q Consensus 164 Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 241 (703)
++.|.+.++. .....+..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..++++.+|++
T Consensus 420 v~~L~L~~n~-----L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQG-----LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCC-----ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 5555555443 12234456889999999999999985 78999999999999999999998 78999999999999
Q ss_pred EecCCCCCCcccCccccCC-CcccEEeecCccccccCC
Q 046587 242 LILRNCSRLIKLPPKMRNL-INLRHLDIRGAKLLKEMP 278 (703)
Q Consensus 242 L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~~~~~~~~p 278 (703)
|+|++|.....+|..++.+ .++..+++.+|..+...|
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999997777899888754 577889998886544433
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.23 E-value=1.5e-08 Score=98.69 Aligned_cols=281 Identities=16% Similarity=0.197 Sum_probs=157.0
Q ss_pred CCccEEEEeccCCCCcCC---CCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccC----C
Q 046587 398 SKMKVLKLENCHNCVSLP---SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQ----L 470 (703)
Q Consensus 398 ~~L~~L~l~~~~~~~~l~---~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~----~ 470 (703)
..|+.|.+.+|....+-+ .....|++++|.+.+|..++...-. ......++|+.+. +..|..++.. +
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~----sla~~C~~l~~l~--L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL----SLARYCRKLRHLN--LHSCSSITDVSLKYL 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH----HHHHhcchhhhhh--hcccchhHHHHHHHH
Confidence 357888888888765444 3457899999999999876654211 1112366777743 4456665422 3
Q ss_pred CCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCccc---------------cccccccc
Q 046587 471 PELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKL---------------QRLFDDEE 535 (703)
Q Consensus 471 ~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L---------------~~l~~~~~ 535 (703)
.+++++|++|+++.|+.... .......++|.. ++++...+|..+ .++++...
T Consensus 212 a~gC~kL~~lNlSwc~qi~~-~gv~~~~rG~~~------------l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c 278 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISG-NGVQALQRGCKE------------LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC 278 (483)
T ss_pred HHhhhhHHHhhhccCchhhc-CcchHHhccchh------------hhhhhhcccccccHHHHHHHhccChHhhccchhhh
Confidence 45689999999999987653 111111111211 222222222221 11111111
Q ss_pred c-cCCCCCCCCCCCCcccccEEEEecCCCCccccc--cccccCCccEEEeecCcCcccccc--cCCCCCCCcEEEecCCC
Q 046587 536 D-ASSSSPSPASSSSPVMLQHLSIENCPELTSLSS--GVQFLEALEFLEIRDCPELESILD--GLPNLKCLQSIYIWKCP 610 (703)
Q Consensus 536 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~p~--~~~~l~~L~~L~l~~c~ 610 (703)
. ++... ....-..+..|+.|..++|...+..+. ..++.++|+.|.+++|..++..-- .-.+.+.|+.+++.+|.
T Consensus 279 ~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 279 NQLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred ccccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 0 00000 000112344578888888876553321 123567788888888877654311 12347778888888875
Q ss_pred CCCcc--CC-CCCCCCccEEEeccCCCCccc-----ccccCCCCCcceEeeccCCCcccCCCC--CCCCCcCeEEEecCC
Q 046587 611 SLVSF--PE-RGLPNTISRVGIGECDKLEAL-----PNDLHKINSLRYLSIQLCRNLVSFPEE--GFPTSLTSLRIGDFK 680 (703)
Q Consensus 611 ~l~~~--~~-~~~~~~L~~L~l~~c~~l~~l-----p~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 680 (703)
....- -. ..-.+.|+.|.++.|..++.- -..-.....|+.+.+.+||.+..-... ...++|+.+++.+|.
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 44332 11 122567888888888766643 223345667888888888877543222 235688888888887
Q ss_pred CCc--cccccCcCCCCceeeE
Q 046587 681 MYK--TLVQWGLHRLTSLGRL 699 (703)
Q Consensus 681 ~l~--~~~~~~l~~l~~L~~L 699 (703)
... .+... -.++|++++.
T Consensus 438 ~vtk~~i~~~-~~~lp~i~v~ 457 (483)
T KOG4341|consen 438 DVTKEAISRF-ATHLPNIKVH 457 (483)
T ss_pred hhhhhhhHHH-HhhCccceeh
Confidence 766 22222 3566666654
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=1.7e-06 Score=57.51 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=18.0
Q ss_pred cccEEecCCCCCCccCccccCCCcCceEeccCCCCccc
Q 046587 192 RLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSL 229 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l 229 (703)
+|++|++++|.++.+|..+++|++|++|++++|.|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34555555555555544455555555555555544443
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.5e-06 Score=56.04 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=29.3
Q ss_pred CcCceEeccCCCCccccccccccccCcEEecCCCCCCcccC
Q 046587 214 RLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLP 254 (703)
Q Consensus 214 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 254 (703)
++|++|++++|.|+.+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888888888877888888888888887 455444
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=9e-07 Score=93.18 Aligned_cols=107 Identities=24% Similarity=0.265 Sum_probs=76.1
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEE
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHL 266 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 266 (703)
+..++.|..|++.+|.+..+...+..+++|++|++++|.|+.+ ..+..+..|+.|++.+| .+..++. +..++.|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhccC-Cccchhhhcc
Confidence 5677788888888888887765577888888888888888877 46677777888888887 5665554 6668888888
Q ss_pred eecCccccccCCcc-CCCCCCCcccCeeEeec
Q 046587 267 DIRGAKLLKEMPFG-MKELKNLQTLSNFIVGK 297 (703)
Q Consensus 267 ~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~ 297 (703)
++++|.+ ..+... ...+.+++.+.+..+..
T Consensus 168 ~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 168 DLSYNRI-VDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cCCcchh-hhhhhhhhhhccchHHHhccCCch
Confidence 8888853 333221 35566666666544433
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.92 E-value=9e-07 Score=84.71 Aligned_cols=88 Identities=22% Similarity=0.230 Sum_probs=52.4
Q ss_pred hhhcCCCcccEEecCCCCCCc-----cCccccCCCcCceEeccCC---C-Ccccccc-------ccccccCcEEecCCCC
Q 046587 185 DLLPKFRRLRMLSLQGYCIGE-----LPMSFEDLRLLRLLNLADT---D-IRSLPES-------TCTLLNLEILILRNCS 248 (703)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~~---~-i~~lp~~-------i~~L~~L~~L~L~~~~ 248 (703)
.....+..+..++|++|.++. +...+.+.++||.-++++- . ..++|+. +-+.++|++|||+.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 335567788889999888642 3444566677888877753 1 1245543 2344577777777764
Q ss_pred CCcccCcc----ccCCCcccEEeecCcc
Q 046587 249 RLIKLPPK----MRNLINLRHLDIRGAK 272 (703)
Q Consensus 249 ~l~~lp~~----i~~L~~L~~L~l~~~~ 272 (703)
.-..-++. +.++..|++|.|.+|.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 33222222 3456666666666664
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.92 E-value=9.8e-07 Score=84.46 Aligned_cols=241 Identities=17% Similarity=0.143 Sum_probs=125.0
Q ss_pred ccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCC----CccCc-------cccCCCcCceEeccCC
Q 046587 156 KVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCI----GELPM-------SFEDLRLLRLLNLADT 224 (703)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l----~~lp~-------~i~~l~~L~~L~L~~~ 224 (703)
+....+..+..+.+.++.-+.. ........+.+-+.||..+|+..-. ..+|+ .+-.+.+|++|+||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~E-Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTE-AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHH-HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3445566777777777652211 1234455677788999999886542 33443 3345568999999999
Q ss_pred CCc-ccc----ccccccccCcEEecCCCCCCcccCc--------------cccCCCcccEEeecCccccccCC-----cc
Q 046587 225 DIR-SLP----ESTCTLLNLEILILRNCSRLIKLPP--------------KMRNLINLRHLDIRGAKLLKEMP-----FG 280 (703)
Q Consensus 225 ~i~-~lp----~~i~~L~~L~~L~L~~~~~l~~lp~--------------~i~~L~~L~~L~l~~~~~~~~~p-----~~ 280 (703)
-+. .-+ .-+...+.|++|.|.+| .+..... -+++-++||++...+|. +..-+ ..
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~ 180 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEA 180 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHH
Confidence 765 222 33567889999999998 4432211 12344566666666553 22211 11
Q ss_pred CCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCch
Q 046587 281 MKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGV 360 (703)
Q Consensus 281 i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 360 (703)
+...+.|+.+.+..+++... -..+....+..+++|+.|+++-+. +...
T Consensus 181 ~~~~~~leevr~~qN~I~~e---------------------------G~~al~eal~~~~~LevLdl~DNt-----ft~e 228 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPE---------------------------GVTALAEALEHCPHLEVLDLRDNT-----FTLE 228 (382)
T ss_pred HHhccccceEEEecccccCc---------------------------hhHHHHHHHHhCCcceeeecccch-----hhhH
Confidence 33334444443333322111 001233345566666666665322 2222
Q ss_pred hhHhhhhcCCCCCCcceEEEeccCCCC-----CCcccCCCCCCCccEEEEeccCCCCcCC-----CCCCcCccceeeecc
Q 046587 361 VEEHVLEILQPHKCIKKVAIRNYGGAR-----FPHWIGDPSFSKMKVLKLENCHNCVSLP-----SLGLLSSLKHLAVKG 430 (703)
Q Consensus 361 ~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~~~~L~~L~l~~~~~~~~l~-----~l~~l~~L~~L~l~~ 430 (703)
........+..+++|+.+++..|.... +-..+.. ..++|+.|.+.+|.+...-. +....|.|++|.|++
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~-~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE-SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhc-cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 333444455555566666665554322 1112222 24566666666665533211 334456666666666
Q ss_pred cc
Q 046587 431 LK 432 (703)
Q Consensus 431 ~~ 432 (703)
|.
T Consensus 308 N~ 309 (382)
T KOG1909|consen 308 NR 309 (382)
T ss_pred cc
Confidence 54
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.1e-06 Score=82.08 Aligned_cols=81 Identities=21% Similarity=0.204 Sum_probs=37.0
Q ss_pred cccEEecCCCCCC--ccCccccCCCcCceEeccCCCCc-cccccccccccCcEEecCCCCCCcccCc--cccCCCcccEE
Q 046587 192 RLRMLSLQGYCIG--ELPMSFEDLRLLRLLNLADTDIR-SLPESTCTLLNLEILILRNCSRLIKLPP--KMRNLINLRHL 266 (703)
Q Consensus 192 ~Lr~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 266 (703)
.|++|||+...++ .+-..+..+.+|+-|.|.++.+. .+-..|.+-.+|+.|+|+.|..+++... -+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3555555554442 22222344455555555555443 2223344455555555555544443221 13455555555
Q ss_pred eecCcc
Q 046587 267 DIRGAK 272 (703)
Q Consensus 267 ~l~~~~ 272 (703)
++++|.
T Consensus 266 NlsWc~ 271 (419)
T KOG2120|consen 266 NLSWCF 271 (419)
T ss_pred CchHhh
Confidence 555553
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=3.8e-07 Score=95.16 Aligned_cols=126 Identities=20% Similarity=0.209 Sum_probs=96.4
Q ss_pred cccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCC-CCCccEEE
Q 046587 550 PVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGL-PNTISRVG 628 (703)
Q Consensus 550 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~ 628 (703)
+..|.+.+.+.| .+..+....+.++.|+.|+|+.|. +..+ +.+..++.|++|+|+.| .+..+|..+. -..|+.|.
T Consensus 163 Wn~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk-~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYN-RLVLMDESLQLLPALESLNLSHNK-FTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhh-hhhh-HHHHhcccccccccccc-hhccccccchhhhhheeee
Confidence 444677777666 566677777788999999999984 4455 47888999999999998 6777775443 23499999
Q ss_pred eccCCCCcccccccCCCCCcceEeeccCCCcccCCCC---CCCCCcCeEEEecCCCC
Q 046587 629 IGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE---GFPTSLTSLRIGDFKMY 682 (703)
Q Consensus 629 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l 682 (703)
+++ +.++.+ .++.++.+|+.|++++| -|....+. +.+..|+.|++.|||.-
T Consensus 239 lrn-N~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRN-NALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecc-cHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 998 567777 57889999999999998 66554433 33678999999999854
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.64 E-value=1e-05 Score=85.24 Aligned_cols=107 Identities=24% Similarity=0.370 Sum_probs=85.2
Q ss_pred CCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEee
Q 046587 189 KFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDI 268 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 268 (703)
.+..++.+.+..+.+..+-..++.+++|++|++.+|.|+.+...+..+++|++|++++| .+..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 45567777788888877656688899999999999999988766889999999999997 6777765 788889999999
Q ss_pred cCccccccCCccCCCCCCCcccCeeEeecCC
Q 046587 269 RGAKLLKEMPFGMKELKNLQTLSNFIVGKGE 299 (703)
Q Consensus 269 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~ 299 (703)
++|. +..+ .++..+++|+.+++..+....
T Consensus 148 ~~N~-i~~~-~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 148 SGNL-ISDI-SGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred ccCc-chhc-cCCccchhhhcccCCcchhhh
Confidence 9996 3333 356668888888776665443
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=2.9e-05 Score=85.47 Aligned_cols=112 Identities=22% Similarity=0.285 Sum_probs=84.5
Q ss_pred cCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCcccc--cccccc
Q 046587 159 NEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLP--ESTCTL 236 (703)
Q Consensus 159 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~i~~L 236 (703)
.-+|.||+|.+.+.. +....+...+.++++|+.||+|++.++.+ ..+++|++|+.|.+++-.+..-+ ..+.+|
T Consensus 145 ~~LPsL~sL~i~~~~----~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ----FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hhCcccceEEecCce----ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 457899999886643 22233556678999999999999999888 68899999999999988776432 467899
Q ss_pred ccCcEEecCCCCCCcccCcc-------ccCCCcccEEeecCcccccc
Q 046587 237 LNLEILILRNCSRLIKLPPK-------MRNLINLRHLDIRGAKLLKE 276 (703)
Q Consensus 237 ~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~~~~~ 276 (703)
++|++||++..... ..+.. -..|++||.||.+++.....
T Consensus 220 ~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 220 KKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred cCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 99999999985332 22211 13589999999999865443
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.4e-06 Score=78.15 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=107.4
Q ss_pred EecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCcccc--ccccccCCccEEEeecCcCcccccc-cCCC
Q 046587 521 IENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLS--SGVQFLEALEFLEIRDCPELESILD-GLPN 597 (703)
Q Consensus 521 l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~p~-~~~~ 597 (703)
++.|.+|+.+.++++..+.. ....+..-.+|+.|+++.|..+++.. ..+..++.|.+|+|+-|......-. .+.+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHhhhhccccccccCcH--HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 56799999888887765532 22255555669999999998877542 2345678899999999865543211 1111
Q ss_pred -CCCCcEEEecCCCCCCccCC----CCCCCCccEEEeccCCCCcc-cccccCCCCCcceEeeccCCCcccCCCC-----C
Q 046587 598 -LKCLQSIYIWKCPSLVSFPE----RGLPNTISRVGIGECDKLEA-LPNDLHKINSLRYLSIQLCRNLVSFPEE-----G 666 (703)
Q Consensus 598 -l~~L~~L~l~~c~~l~~~~~----~~~~~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~l~~~-----~ 666 (703)
-++|..|+|++|..--.... ..-.++|.+||+++|..++. +...+.+++.|++|+++.|-.+ ++. .
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~~~~l~ 360 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPETLLELN 360 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC---ChHHeeeec
Confidence 36788999998853321111 01257899999999998874 3446678999999999999654 333 2
Q ss_pred CCCCcCeEEEecCCCC
Q 046587 667 FPTSLTSLRIGDFKMY 682 (703)
Q Consensus 667 ~~~~L~~L~i~~c~~l 682 (703)
-.|+|..|++.||-.=
T Consensus 361 s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 361 SKPSLVYLDVFGCVSD 376 (419)
T ss_pred cCcceEEEEeccccCc
Confidence 3589999999998543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=4.6e-05 Score=71.51 Aligned_cols=57 Identities=28% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCcCceEeccCCCCc---cccccccccccCcEEecCCCCC---CcccCccccCCCcccEEeecCcc
Q 046587 213 LRLLRLLNLADTDIR---SLPESTCTLLNLEILILRNCSR---LIKLPPKMRNLINLRHLDIRGAK 272 (703)
Q Consensus 213 l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~L~~~~~---l~~lp~~i~~L~~L~~L~l~~~~ 272 (703)
+++++.|||.+|.|. ++-.-..+|+.|++|+|+.|+. +..+| ..+++|++|-|.+++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG 132 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC
Confidence 345555555555554 2222234555566666655421 11122 233455555555553
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=1.8e-05 Score=65.41 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=42.5
Q ss_pred hhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCc
Q 046587 184 SDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPP 255 (703)
Q Consensus 184 ~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 255 (703)
+.+-.+++.++.|++++|.+.++|..+..++.||.|+++.|.+...|..|..|.+|-.|+..++ ....+|-
T Consensus 70 ~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~ 140 (177)
T KOG4579|consen 70 KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDV 140 (177)
T ss_pred HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC-ccccCcH
Confidence 3334445556666666666666666666666666666666666666666666666666666664 3444443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.33 E-value=2.5e-05 Score=64.57 Aligned_cols=85 Identities=29% Similarity=0.325 Sum_probs=58.1
Q ss_pred hcCCCcccEEecCCCCCCccCccccC-CCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccE
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFED-LRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRH 265 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~-l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 265 (703)
+.+..+|...+|++|.+..+|..|.. .+.++.|++++|.|..+|.++..++.|+.|+++.| .+...|.-|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 34445667777777777777766643 33677777777777777777777777777777776 45566666666777777
Q ss_pred EeecCcc
Q 046587 266 LDIRGAK 272 (703)
Q Consensus 266 L~l~~~~ 272 (703)
|+..++.
T Consensus 128 Lds~~na 134 (177)
T KOG4579|consen 128 LDSPENA 134 (177)
T ss_pred hcCCCCc
Confidence 7766663
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.32 E-value=7.1e-06 Score=85.98 Aligned_cols=85 Identities=26% Similarity=0.317 Sum_probs=48.4
Q ss_pred hhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcc
Q 046587 184 SDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINL 263 (703)
Q Consensus 184 ~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 263 (703)
+.++.-++.|+.|+|++|++.... .+..|.+|+.|||++|.+..+|.--..=.+|+.|.+++| .++.+-. |.+|++|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~g-ie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLRG-IENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhhh-HHhhhhh
Confidence 344455556666666666665554 555666666666666666666532111123666666665 4444443 6666666
Q ss_pred cEEeecCc
Q 046587 264 RHLDIRGA 271 (703)
Q Consensus 264 ~~L~l~~~ 271 (703)
+.||++.|
T Consensus 257 ~~LDlsyN 264 (1096)
T KOG1859|consen 257 YGLDLSYN 264 (1096)
T ss_pred hccchhHh
Confidence 66666665
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.00011 Score=68.93 Aligned_cols=84 Identities=24% Similarity=0.328 Sum_probs=58.3
Q ss_pred cCCCcccEEecCCCCCCc---cCccccCCCcCceEeccCCCCccccccc-cccccCcEEecCCCCCCc--ccCccccCCC
Q 046587 188 PKFRRLRMLSLQGYCIGE---LPMSFEDLRLLRLLNLADTDIRSLPEST-CTLLNLEILILRNCSRLI--KLPPKMRNLI 261 (703)
Q Consensus 188 ~~l~~Lr~L~L~~~~l~~---lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~--~lp~~i~~L~ 261 (703)
.....++.+||.+|.|.. +-..+.++++|++|+|+.|.+..--.+. ..+.+|++|-|.+. .+. .....+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT-GLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC-CCChhhhhhhhhcch
Confidence 456788899999998754 3334568899999999998765222222 45678999999884 332 3334466788
Q ss_pred cccEEeecCcc
Q 046587 262 NLRHLDIRGAK 272 (703)
Q Consensus 262 ~L~~L~l~~~~ 272 (703)
.++.|+++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 88888888773
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.08 E-value=0.0002 Score=78.92 Aligned_cols=130 Identities=22% Similarity=0.200 Sum_probs=87.6
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCC--CccCccccCCCcCceEeccCCCCccccccccccccC
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCI--GELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNL 239 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l--~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L 239 (703)
.+|+.|.+.+.. .+....+...-.-+|.||.|.+++-.+ .++..-..++++|+.||+++++++.+ .++++|++|
T Consensus 122 ~nL~~LdI~G~~---~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSE---LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccc---hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 467777665533 223334444455678999999988665 23334456789999999999999988 789999999
Q ss_pred cEEecCCCCCCcccC--ccccCCCcccEEeecCccccccC--Cc----cCCCCCCCcccCeeEee
Q 046587 240 EILILRNCSRLIKLP--PKMRNLINLRHLDIRGAKLLKEM--PF----GMKELKNLQTLSNFIVG 296 (703)
Q Consensus 240 ~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~--p~----~i~~l~~L~~L~~~~~~ 296 (703)
|+|.+++= .+..-+ .++.+|++|++||+|........ .. --..|++|+.|+.+++.
T Consensus 198 q~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 198 QVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99999873 333322 24679999999999876432211 10 11237788888765443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.69 E-value=0.002 Score=57.47 Aligned_cols=102 Identities=24% Similarity=0.269 Sum_probs=73.5
Q ss_pred cccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccc-cccCcEEecCCCCCCcccCc--cccCCCcccEEee
Q 046587 192 RLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCT-LLNLEILILRNCSRLIKLPP--KMRNLINLRHLDI 268 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l 268 (703)
....+||++|.+..++ .|..+..|.+|.+.+|+|+.+-+.+.. +++|..|.|.+| .+.++.+ -+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 4567888888887665 467888899999999999988766654 567999999987 5666543 2678889999988
Q ss_pred cCccccccC---CccCCCCCCCcccCeeEe
Q 046587 269 RGAKLLKEM---PFGMKELKNLQTLSNFIV 295 (703)
Q Consensus 269 ~~~~~~~~~---p~~i~~l~~L~~L~~~~~ 295 (703)
-+|+....- -..+..+++|++|+...+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 888643211 122667788888875443
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.63 E-value=0.00069 Score=63.02 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=60.0
Q ss_pred cCCCcccEEecCCCCCCc-----cCccccCCCcCceEeccCCCCc----ccc-------ccccccccCcEEecCCCCCCc
Q 046587 188 PKFRRLRMLSLQGYCIGE-----LPMSFEDLRLLRLLNLADTDIR----SLP-------ESTCTLLNLEILILRNCSRLI 251 (703)
Q Consensus 188 ~~l~~Lr~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~l~ 251 (703)
..+..+..++||||.|+. +...|.+-.+|+.-+++.-... ++| +.+-++++|+..+|+.|..-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 346778889999988743 4445666788888888763211 333 345678899999999886655
Q ss_pred ccCcc----ccCCCcccEEeecCcc
Q 046587 252 KLPPK----MRNLINLRHLDIRGAK 272 (703)
Q Consensus 252 ~lp~~----i~~L~~L~~L~l~~~~ 272 (703)
+.|+. |.+-+.|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 55543 5677889999998885
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.55 E-value=0.00036 Score=64.85 Aligned_cols=199 Identities=19% Similarity=0.194 Sum_probs=114.2
Q ss_pred ccCCCcCceEeccCCCCc-----cccccccccccCcEEecCCCCCCc----ccCc-------cccCCCcccEEeecCccc
Q 046587 210 FEDLRLLRLLNLADTDIR-----SLPESTCTLLNLEILILRNCSRLI----KLPP-------KMRNLINLRHLDIRGAKL 273 (703)
Q Consensus 210 i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~----~lp~-------~i~~L~~L~~L~l~~~~~ 273 (703)
+..+..+..++|++|.|. .+-..|.+-.+|++.+++.- ... ++|+ .+-++++|+..+|++|-+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 345678899999999986 23445677889999998862 222 3333 356899999999999987
Q ss_pred cccCCcc----CCCCCCCcccCeeEeecCCCC-CChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEE
Q 046587 274 LKEMPFG----MKELKNLQTLSNFIVGKGETA-SGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLD 348 (703)
Q Consensus 274 ~~~~p~~----i~~l~~L~~L~~~~~~~~~~~-~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 348 (703)
....|.. |++-+.|.+|.+..++..... ..++ +.|.+|. ........+.|+...+.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la-----------------~nKKaa~kp~Le~vicg 165 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA-----------------YNKKAADKPKLEVVICG 165 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH-----------------HHhhhccCCCceEEEec
Confidence 6666654 678899999998887765431 1111 1121111 00112233444444443
Q ss_pred ccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCC--C--cccCCCCCCCccEEEEeccCCCCcCC-----CCCC
Q 046587 349 WGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARF--P--HWIGDPSFSKMKVLKLENCHNCVSLP-----SLGL 419 (703)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--p--~~~~~~~~~~L~~L~l~~~~~~~~l~-----~l~~ 419 (703)
.+.- ...........++.+..|+.+.+..|++..= . ...+...+.+|+.|++.+|.++..-. .+..
T Consensus 166 rNRl-----engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 166 RNRL-----ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred cchh-----ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 2220 0001111222344456777777777665421 0 01111235778888888877643211 3444
Q ss_pred cCccceeeeccccc
Q 046587 420 LSSLKHLAVKGLKK 433 (703)
Q Consensus 420 l~~L~~L~l~~~~~ 433 (703)
-+.|+.|.+.+|-.
T Consensus 241 W~~lrEL~lnDCll 254 (388)
T COG5238 241 WNLLRELRLNDCLL 254 (388)
T ss_pred cchhhhccccchhh
Confidence 56678888887753
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.40 E-value=0.0012 Score=36.35 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=9.0
Q ss_pred CceEeccCCCCcccccccc
Q 046587 216 LRLLNLADTDIRSLPESTC 234 (703)
Q Consensus 216 L~~L~L~~~~i~~lp~~i~ 234 (703)
|++|++++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4445555554444444433
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.19 E-value=0.0057 Score=54.66 Aligned_cols=84 Identities=26% Similarity=0.334 Sum_probs=58.8
Q ss_pred hcCCCcccEEecCCCCCCccCccccC-CCcCceEeccCCCCcccc--ccccccccCcEEecCCCCCCcccCc----cccC
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFED-LRLLRLLNLADTDIRSLP--ESTCTLLNLEILILRNCSRLIKLPP----KMRN 259 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~-l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~ 259 (703)
|..++.|..|.+.+|+|+.+.+.+.. +.+|..|.|.+|.|.++- ..+..+++|++|.+-+| .+..-+. .+..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEEEe
Confidence 66777888888888888887555543 456888888888877553 33566778888888776 3443332 2678
Q ss_pred CCcccEEeecCc
Q 046587 260 LINLRHLDIRGA 271 (703)
Q Consensus 260 L~~L~~L~l~~~ 271 (703)
+++|++||..+-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 888888887653
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.05 E-value=0.0035 Score=58.53 Aligned_cols=104 Identities=26% Similarity=0.350 Sum_probs=51.5
Q ss_pred CCcccEEecCCCCCCccCccccCCCcCceEeccCC--CCc-cccccccccccCcEEecCCCCCCcc---cCccccCCCcc
Q 046587 190 FRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADT--DIR-SLPESTCTLLNLEILILRNCSRLIK---LPPKMRNLINL 263 (703)
Q Consensus 190 l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~L~~L 263 (703)
+..|+.|++.+..++++. .+..|++|++|.++.| .+. .++....++++|++|++++| .+.. ++. +..+.+|
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELENL 118 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhhcch
Confidence 334444444444443331 2335566666666666 333 44444445566777777665 2332 222 4456666
Q ss_pred cEEeecCccccccCC----ccCCCCCCCcccCeeEeec
Q 046587 264 RHLDIRGAKLLKEMP----FGMKELKNLQTLSNFIVGK 297 (703)
Q Consensus 264 ~~L~l~~~~~~~~~p----~~i~~l~~L~~L~~~~~~~ 297 (703)
..|++.+|.... +- ..+.-+++|..|+...+..
T Consensus 119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 119 KSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 666666664322 11 0133456666665544443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.00035 Score=65.15 Aligned_cols=42 Identities=31% Similarity=0.285 Sum_probs=20.0
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccc
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSL 229 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l 229 (703)
..+|+.|+||.|+-|.|+++. .+..|++|+.|.|+.|.|..+
T Consensus 37 c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccH
Confidence 344555555555555554442 244445555555555544433
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0039 Score=34.29 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=18.6
Q ss_pred cccEEecCCCCCCccCccccCC
Q 046587 192 RLRMLSLQGYCIGELPMSFEDL 213 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~l 213 (703)
+|++|++++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4899999999999999887654
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.00071 Score=60.30 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=16.8
Q ss_pred CCccEEEeccCCCCccccc-cc-CCCCCcceEeeccCCCccc
Q 046587 622 NTISRVGIGECDKLEALPN-DL-HKINSLRYLSIQLCRNLVS 661 (703)
Q Consensus 622 ~~L~~L~l~~c~~l~~lp~-~~-~~l~~L~~L~l~~c~~l~~ 661 (703)
++++.|.+.+|..+....- .+ +-.++|+.|+|++|+.+++
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 3444555555544432200 00 1234555555555554444
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.0012 Score=61.78 Aligned_cols=104 Identities=26% Similarity=0.316 Sum_probs=81.1
Q ss_pred CCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCc--cccCCCcccEE
Q 046587 189 KFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPP--KMRNLINLRHL 266 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 266 (703)
.+.+.+.|++.||.+.++. .+..++.|++|.|+-|.|+++ ..+..+++|+.|+|+.| .+..+.+ .+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 3556788999999998874 346889999999999999998 57889999999999997 4555543 25789999999
Q ss_pred eecCccccccCCcc-----CCCCCCCcccCeeEe
Q 046587 267 DIRGAKLLKEMPFG-----MKELKNLQTLSNFIV 295 (703)
Q Consensus 267 ~l~~~~~~~~~p~~-----i~~l~~L~~L~~~~~ 295 (703)
-|..|.....-+.. +.-|++|+.|+...+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 99888755544432 556889999886443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.96 E-value=0.015 Score=54.48 Aligned_cols=83 Identities=27% Similarity=0.305 Sum_probs=54.0
Q ss_pred cCCCcCceEeccCCCCccccccccccccCcEEecCCC--CCCcccCccccCCCcccEEeecCccccccCCcc---CCCCC
Q 046587 211 EDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNC--SRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFG---MKELK 285 (703)
Q Consensus 211 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~---i~~l~ 285 (703)
..+..|+.|++.+..++++ ..+-.|++|+.|.++.| .....++.-..++++|++|++++|++ + ++.. +..++
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~-~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-K-DLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-c-cccccchhhhhc
Confidence 3445667777777666544 34457899999999998 44445555456779999999999963 2 2333 34445
Q ss_pred CCcccCeeEee
Q 046587 286 NLQTLSNFIVG 296 (703)
Q Consensus 286 ~L~~L~~~~~~ 296 (703)
+|..|+++.+.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 55555555443
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.94 E-value=0.0007 Score=61.47 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=70.8
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEE
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHL 266 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 266 (703)
+..++..++||++.|++..+-..|+-++.|..|+++.+.|..+|..++.+..+..+++..| .....|.+++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4456778888888888777777778888888888888888888888888888888888876 678888888888888888
Q ss_pred eecCcccc
Q 046587 267 DIRGAKLL 274 (703)
Q Consensus 267 ~l~~~~~~ 274 (703)
++-++...
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88777543
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=0.0045 Score=55.37 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=63.6
Q ss_pred ccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccC---CCCCCCCccEEEeccCCCCccc-ccccCCCCCcceEe
Q 046587 577 LEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFP---ERGLPNTISRVGIGECDKLEAL-PNDLHKINSLRYLS 652 (703)
Q Consensus 577 L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~---~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~ 652 (703)
++.++-+++.....--+.+.++++++.|.+.+|..+.... -.+..++|+.|+|++|+.+++- -..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 7777777776655545667778888888888887775432 1236788999999999998864 23567889999999
Q ss_pred eccCCCcccC
Q 046587 653 IQLCRNLVSF 662 (703)
Q Consensus 653 l~~c~~l~~l 662 (703)
|.+.|.+...
T Consensus 183 l~~l~~v~~~ 192 (221)
T KOG3864|consen 183 LYDLPYVANL 192 (221)
T ss_pred hcCchhhhch
Confidence 9988766543
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.39 E-value=0.025 Score=28.72 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=4.1
Q ss_pred CceEeccCCCCcc
Q 046587 216 LRLLNLADTDIRS 228 (703)
Q Consensus 216 L~~L~L~~~~i~~ 228 (703)
|+.|++++|.+++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3444444444333
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.25 E-value=0.15 Score=43.62 Aligned_cols=103 Identities=12% Similarity=0.276 Sum_probs=44.0
Q ss_pred cccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCccccc-ccc
Q 046587 157 VFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSLPE-STC 234 (703)
Q Consensus 157 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~ 234 (703)
.|..+.+|+.+.+... ...+....|..+..|+.+.+.++ +..++ ..|.++..|+++.+.. .+..++. .+.
T Consensus 7 ~F~~~~~l~~i~~~~~------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp TTTT-TT--EEEETST--------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred HHhCCCCCCEEEECCC------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 3445555665554321 12334445666666666666653 55543 3455665666666654 4444432 344
Q ss_pred ccccCcEEecCCCCCCcccCc-cccCCCcccEEeecC
Q 046587 235 TLLNLEILILRNCSRLIKLPP-KMRNLINLRHLDIRG 270 (703)
Q Consensus 235 ~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~ 270 (703)
...+|+.+++..+ +..++. .+.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 4666666666542 333332 34554 666666544
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.64 E-value=0.044 Score=27.83 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=11.3
Q ss_pred CcccEEecCCCCCCccC
Q 046587 191 RRLRMLSLQGYCIGELP 207 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp 207 (703)
++||+|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36899999999998876
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.60 E-value=0.004 Score=67.63 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=65.9
Q ss_pred CcccccEEEEecC-CCCcccc----ccccccCCccEEEeecCcCcccc--cccCCCCCCCcEEEecCCCCCCccC--C-C
Q 046587 549 SPVMLQHLSIENC-PELTSLS----SGVQFLEALEFLEIRDCPELESI--LDGLPNLKCLQSIYIWKCPSLVSFP--E-R 618 (703)
Q Consensus 549 ~~~~L~~L~l~~~-~~l~~l~----~~~~~~~~L~~L~l~~c~~l~~~--p~~~~~l~~L~~L~l~~c~~l~~~~--~-~ 618 (703)
.++.|++|++++| ......+ .....+++|+.|+++.|..++.. ......+++|+.|.+.+|..+.... . .
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 3445777777663 2221111 11224466777777776543322 1111226677777766665532211 0 1
Q ss_pred CCCCCccEEEeccCCCCcc--cccccCCCCCcceEeeccCCCcccCCCCCCCCCcCeEEEecCCCCc--cccccCcCCCC
Q 046587 619 GLPNTISRVGIGECDKLEA--LPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYK--TLVQWGLHRLT 694 (703)
Q Consensus 619 ~~~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~--~~~~~~l~~l~ 694 (703)
...++|++|++++|..++. +.....++++|+.|.+.+++. .+.++.+.+.+|.... ........+++
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~ 362 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCP 362 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHHHhcCC
Confidence 1245577777776666522 222223344444443333322 2344444444444332 23333355566
Q ss_pred ceeeEEe
Q 046587 695 SLGRLYI 701 (703)
Q Consensus 695 ~L~~L~l 701 (703)
.++.+.+
T Consensus 363 ~l~~~~l 369 (482)
T KOG1947|consen 363 KLTDLSL 369 (482)
T ss_pred Ccchhhh
Confidence 6655544
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.20 E-value=0.016 Score=63.01 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=65.3
Q ss_pred cccccEEEEecCCCCcc--ccccccccCCccEEEeecC-cCccccc----ccCCCCCCCcEEEecCCCCCCccCC---CC
Q 046587 550 PVMLQHLSIENCPELTS--LSSGVQFLEALEFLEIRDC-PELESIL----DGLPNLKCLQSIYIWKCPSLVSFPE---RG 619 (703)
Q Consensus 550 ~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c-~~l~~~p----~~~~~l~~L~~L~l~~c~~l~~~~~---~~ 619 (703)
.+.|+.|.+.+|..+.. +.......+.|++|++++| ......+ .....+++|+.|+++.|..+....- ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45588888888877665 3233336677888888873 2222221 2334467777888877765432210 11
Q ss_pred CCCCccEEEeccCCCCc--ccccccCCCCCcceEeeccCCCc
Q 046587 620 LPNTISRVGIGECDKLE--ALPNDLHKINSLRYLSIQLCRNL 659 (703)
Q Consensus 620 ~~~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c~~l 659 (703)
..++|+.|.+.+|..++ .+-.....+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 24577777777777543 22333456777777777777665
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.85 E-value=0.61 Score=39.73 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=16.1
Q ss_pred cCCCCCcceEeeccCCCcccCCCCCCC-CCcCeEEEecCCCCccccccCcCCCCce
Q 046587 642 LHKINSLRYLSIQLCRNLVSFPEEGFP-TSLTSLRIGDFKMYKTLVQWGLHRLTSL 696 (703)
Q Consensus 642 ~~~l~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~i~~c~~l~~~~~~~l~~l~~L 696 (703)
+..+++|+.+.+.. .+..++...+. .+|+.+.+.+ .++.++...+.+.++|
T Consensus 77 F~~~~~l~~i~~~~--~~~~i~~~~f~~~~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 77 FSNCTNLKNIDIPS--NITEIGSSSFSNCNLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT-TTECEEEETT--T-BEEHTTTTTT-T--EEE-TT--B-SS----GGG-----
T ss_pred ccccccccccccCc--cccEEchhhhcCCCceEEEECC--CccEECCccccccccC
Confidence 34456666666643 24444433221 2455554433 3444454445555554
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.11 E-value=0.16 Score=29.10 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=10.4
Q ss_pred CcCceEeccCCCCcccccc
Q 046587 214 RLLRLLNLADTDIRSLPES 232 (703)
Q Consensus 214 ~~L~~L~L~~~~i~~lp~~ 232 (703)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555555555555543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.11 E-value=0.16 Score=29.10 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=10.4
Q ss_pred CcCceEeccCCCCcccccc
Q 046587 214 RLLRLLNLADTDIRSLPES 232 (703)
Q Consensus 214 ~~L~~L~L~~~~i~~lp~~ 232 (703)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555555555555543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.71 E-value=0.017 Score=52.73 Aligned_cols=66 Identities=15% Similarity=0.002 Sum_probs=59.3
Q ss_pred hhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCc
Q 046587 186 LLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLI 251 (703)
Q Consensus 186 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~ 251 (703)
-|+.+..|..|+++.+.+..+|..++.+..++.+++..|+.+..|.+++++++++++++.++....
T Consensus 60 n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 60 NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcchH
Confidence 355667888999999999999999999999999999999999999999999999999999975433
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.43 E-value=0.54 Score=26.94 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=8.6
Q ss_pred CCcceEeeccCCCcc
Q 046587 646 NSLRYLSIQLCRNLV 660 (703)
Q Consensus 646 ~~L~~L~l~~c~~l~ 660 (703)
++|+.|+|++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666665554
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.39 E-value=0.6 Score=26.69 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.8
Q ss_pred CCcccEEecCCCCCCccCccc
Q 046587 190 FRRLRMLSLQGYCIGELPMSF 210 (703)
Q Consensus 190 l~~Lr~L~L~~~~l~~lp~~i 210 (703)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998653
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.39 E-value=0.6 Score=26.69 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.8
Q ss_pred CCcccEEecCCCCCCccCccc
Q 046587 190 FRRLRMLSLQGYCIGELPMSF 210 (703)
Q Consensus 190 l~~Lr~L~L~~~~l~~lp~~i 210 (703)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998653
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.97 E-value=1.8 Score=24.74 Aligned_cols=17 Identities=41% Similarity=0.708 Sum_probs=11.3
Q ss_pred cCceEeccCCCCccccc
Q 046587 215 LLRLLNLADTDIRSLPE 231 (703)
Q Consensus 215 ~L~~L~L~~~~i~~lp~ 231 (703)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666777777666664
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.68 E-value=2.8 Score=24.01 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=9.3
Q ss_pred CcCceEeccCCCCccc
Q 046587 214 RLLRLLNLADTDIRSL 229 (703)
Q Consensus 214 ~~L~~L~L~~~~i~~l 229 (703)
++|++|+|++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665443
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.74 E-value=4 Score=22.67 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=6.3
Q ss_pred CcCceEeccCCCCc
Q 046587 214 RLLRLLNLADTDIR 227 (703)
Q Consensus 214 ~~L~~L~L~~~~i~ 227 (703)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555543
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=49.74 E-value=13 Score=21.68 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=8.2
Q ss_pred CcCceEeccCCCCc
Q 046587 214 RLLRLLNLADTDIR 227 (703)
Q Consensus 214 ~~L~~L~L~~~~i~ 227 (703)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666554
No 89
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=42.18 E-value=46 Score=21.84 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=14.5
Q ss_pred CcceEeeccCCCcccCCCCCCCCCcCeEEEec
Q 046587 647 SLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGD 678 (703)
Q Consensus 647 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 678 (703)
++++|.+.+.-+ +.+..+.+|++|++|.+.+
T Consensus 13 ~l~~L~~g~~fn-~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 13 SLKSLIFGSSFN-QPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCeEEEECCccC-ccCCCCccCCCceEEEeeC
Confidence 455555533211 2233344566666666543
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=35.60 E-value=71 Score=37.89 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=55.0
Q ss_pred chHHHHH-hhccCchhhhhHhhhhcCCCCCCccCHHHHHHHHHHCCCCccCCCCchHHHHHHHHHHHHHhCCCccc-cCC
Q 046587 23 VLPVLRL-SYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQ-TSS 100 (703)
Q Consensus 23 i~~~L~l-SYd~L~~~~K~cFL~~a~fp~~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~ 100 (703)
+...+.- -|+.||++.+..++..|+++ .++. ++...-. | . +.+...+++|.+.+++.. .++
T Consensus 251 ~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~-~l~~~l~--~---~--------~~~~~~L~~l~~~~l~~~~~~~ 313 (903)
T PRK04841 251 LSDYLVEEVLDNVDLETRHFLLRCSVLR---SMND-ALIVRVT--G---E--------ENGQMRLEELERQGLFIQRMDD 313 (903)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCH-HHHHHHc--C---C--------CcHHHHHHHHHHCCCeeEeecC
Confidence 5554433 38999999999999999986 3443 3333221 1 1 114567899999999753 333
Q ss_pred CCCceeeCcHHHHHHHHhh
Q 046587 101 GSSKFVMHDLIHDLAELVS 119 (703)
Q Consensus 101 ~~~~~~mHdlv~d~a~~i~ 119 (703)
+...|+.|+++|++.+.-.
T Consensus 314 ~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 314 SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCCEEehhHHHHHHHHHHH
Confidence 4457999999999988765
No 91
>PF13730 HTH_36: Helix-turn-helix domain
Probab=31.33 E-value=89 Score=21.49 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=30.4
Q ss_pred cCchhhhhHhhhhcCCCCCCcc---CHHHHHHHHHHCCCCccCCCCchHHHHHHHHHHHHHhCCCc
Q 046587 33 HLPSHLKRCFAYCAIFPKDYEF---NEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIF 95 (703)
Q Consensus 33 ~L~~~~K~cFL~~a~fp~~~~i---~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll 95 (703)
+|....|.++++++-|..+... +.+.+...- |. .+.....++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~---g~---------s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL---GV---------SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH---Cc---------CHHHHHHHHHHHHHCcCC
Confidence 5677778877777666432221 233332211 11 145678899999999875
No 92
>PF14162 YozD: YozD-like protein
Probab=24.09 E-value=1.3e+02 Score=20.44 Aligned_cols=31 Identities=23% Similarity=0.463 Sum_probs=19.2
Q ss_pred HHCCCCccCCCCchHHHHHHHHHHHHHhCCCccc
Q 046587 64 MAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQ 97 (703)
Q Consensus 64 i~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 97 (703)
+..||++.. .+.++.|.--|+-|+++|++..
T Consensus 22 ~kRGyvP~e---~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 22 VKRGYVPTE---EELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHccCCCcH---HHHHHHHHHHHHHHHHHHhhhh
Confidence 344666532 4566667767777777777653
Done!