Query 046587
Match_columns 703
No_of_seqs 425 out of 3298
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 00:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.5E-39 2.9E-43 363.7 19.8 509 136-703 99-713 (768)
2 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-36 4.5E-41 338.3 30.0 491 136-683 31-559 (606)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-35 4.3E-40 335.0 32.5 525 136-702 24-592 (680)
4 3rgz_A Protein brassinosteroid 100.0 3.8E-37 1.3E-41 350.2 19.3 110 186-295 72-188 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-35 9.3E-40 327.8 30.8 478 162-703 32-554 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.5E-35 5E-40 329.9 28.0 147 135-288 31-180 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 6.7E-35 2.3E-39 329.1 31.0 505 136-702 48-617 (680)
8 3t6q_A CD180 antigen; protein- 100.0 2.6E-33 8.8E-38 311.8 27.4 465 192-703 34-556 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-33 9.8E-38 307.7 25.9 459 162-703 26-506 (549)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-31 4.2E-36 308.1 38.7 502 135-702 22-555 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 3.8E-33 1.3E-37 308.4 20.9 454 162-703 28-527 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 3.2E-32 1.1E-36 301.0 27.7 147 135-287 26-175 (570)
13 4eco_A Uncharacterized protein 100.0 7.5E-33 2.6E-37 307.4 20.6 367 223-683 192-601 (636)
14 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-31 8.9E-36 305.4 33.1 477 160-703 22-535 (844)
15 4ecn_A Leucine-rich repeat pro 100.0 3.4E-32 1.2E-36 306.5 19.2 363 224-683 435-841 (876)
16 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-31 1.8E-35 287.3 26.8 155 524-683 323-482 (520)
17 2z7x_B TOLL-like receptor 1, v 100.0 3.7E-31 1.3E-35 288.6 24.0 433 162-703 21-477 (520)
18 4eco_A Uncharacterized protein 100.0 4.5E-32 1.6E-36 301.2 16.8 381 203-683 195-633 (636)
19 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-32 1.8E-36 297.6 17.0 466 136-685 25-513 (549)
20 4ecn_A Leucine-rich repeat pro 100.0 1.6E-30 5.3E-35 293.0 18.7 363 201-664 435-844 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.2E-29 1.8E-33 273.8 27.6 436 162-683 52-511 (562)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.6E-28 1.6E-32 266.2 30.9 430 191-703 52-506 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 7.3E-28 2.5E-32 269.9 31.1 479 163-682 53-580 (635)
24 1jl5_A Outer protein YOPM; leu 100.0 1.6E-28 5.3E-33 260.5 19.3 394 191-686 11-433 (454)
25 1o6v_A Internalin A; bacterial 100.0 3.5E-27 1.2E-31 252.7 26.7 129 547-683 261-389 (466)
26 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-27 8.6E-32 265.6 26.4 484 191-703 52-576 (635)
27 3v47_A TOLL-like receptor 5B a 100.0 7.2E-27 2.5E-31 250.3 25.7 133 551-685 275-411 (455)
28 1o6v_A Internalin A; bacterial 99.9 1.9E-26 6.4E-31 247.1 25.4 328 187-663 64-391 (466)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-26 5.5E-31 245.3 23.4 186 187-432 38-223 (457)
30 1jl5_A Outer protein YOPM; leu 99.9 1.2E-26 4E-31 246.1 19.5 375 207-683 5-410 (454)
31 3v47_A TOLL-like receptor 5B a 99.9 8.5E-26 2.9E-30 242.0 19.3 117 546-663 294-412 (455)
32 4fmz_A Internalin; leucine ric 99.9 1.4E-25 4.8E-30 231.0 19.0 98 188-291 41-138 (347)
33 3bz5_A Internalin-J, INLJ; leu 99.9 5.9E-25 2E-29 233.2 19.2 311 207-662 35-354 (457)
34 2id5_A Lingo-1, leucine rich r 99.9 3.3E-24 1.1E-28 230.8 25.0 94 194-290 14-109 (477)
35 3o6n_A APL1; leucine-rich repe 99.9 4.1E-24 1.4E-28 223.6 23.0 303 189-681 43-351 (390)
36 3o6n_A APL1; leucine-rich repe 99.9 2.4E-24 8.2E-29 225.4 20.5 304 160-657 43-350 (390)
37 4fmz_A Internalin; leucine ric 99.9 2.3E-24 7.7E-29 221.9 17.9 125 158-294 40-164 (347)
38 3oja_B Anopheles plasmodium-re 99.9 8.2E-24 2.8E-28 233.6 23.5 99 190-290 50-152 (597)
39 2id5_A Lingo-1, leucine rich r 99.9 7.5E-24 2.6E-28 228.0 21.9 295 191-610 32-331 (477)
40 3oja_B Anopheles plasmodium-re 99.9 7E-24 2.4E-28 234.1 19.6 214 160-432 49-265 (597)
41 4fcg_A Uncharacterized protein 99.9 6.5E-23 2.2E-27 208.1 17.7 92 189-281 79-170 (328)
42 1xku_A Decorin; proteoglycan, 99.9 1.9E-21 6.6E-26 198.3 24.7 284 191-656 31-329 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 3.9E-21 1.3E-25 196.1 23.0 282 192-657 34-331 (332)
44 1xku_A Decorin; proteoglycan, 99.9 1.1E-20 3.8E-25 192.6 21.3 284 375-703 33-328 (330)
45 2ft3_A Biglycan; proteoglycan, 99.9 7.6E-21 2.6E-25 194.0 19.6 284 374-703 34-329 (332)
46 1ogq_A PGIP-2, polygalacturona 99.9 5.3E-22 1.8E-26 200.2 10.5 89 191-279 50-143 (313)
47 3g06_A SSPH2 (leucine-rich rep 99.8 3.4E-19 1.2E-23 194.4 26.7 257 191-658 40-296 (622)
48 4fcg_A Uncharacterized protein 99.8 8E-20 2.7E-24 185.3 19.5 228 372-678 80-310 (328)
49 3ogk_B Coronatine-insensitive 99.8 3.5E-22 1.2E-26 221.5 2.1 107 550-657 402-524 (592)
50 2z80_A TOLL-like receptor 2, v 99.8 6.2E-20 2.1E-24 188.9 17.0 58 553-611 251-313 (353)
51 1ogq_A PGIP-2, polygalacturona 99.8 5.4E-21 1.8E-25 192.8 8.4 226 186-432 71-302 (313)
52 3ogk_B Coronatine-insensitive 99.8 1.4E-22 4.7E-27 224.8 -8.3 204 186-429 107-326 (592)
53 2z80_A TOLL-like receptor 2, v 99.8 5.6E-19 1.9E-23 181.8 17.8 81 189-272 29-111 (353)
54 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-22 5.1E-27 217.2 -10.3 231 163-432 4-267 (461)
55 3g06_A SSPH2 (leucine-rich rep 99.8 9.3E-18 3.2E-22 183.1 25.1 115 552-682 182-297 (622)
56 3zyi_A Leucine-rich repeat-con 99.8 7.1E-18 2.4E-22 179.7 22.5 240 193-610 56-301 (452)
57 1z7x_W Ribonuclease inhibitor; 99.8 4.8E-23 1.6E-27 221.0 -18.1 387 191-683 3-441 (461)
58 3zyi_A Leucine-rich repeat-con 99.8 9.6E-18 3.3E-22 178.6 22.9 239 376-680 57-301 (452)
59 3zyj_A Leucine-rich repeat-con 99.8 1.1E-17 3.8E-22 177.4 23.0 240 375-681 45-291 (440)
60 3zyj_A Leucine-rich repeat-con 99.8 6.2E-18 2.1E-22 179.4 20.3 240 193-610 45-290 (440)
61 3o53_A Protein LRIM1, AGAP0063 99.8 2.7E-19 9.3E-24 180.9 8.7 82 184-271 27-109 (317)
62 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-18 7.5E-23 171.6 13.8 76 194-272 14-91 (285)
63 2z66_A Variable lymphocyte rec 99.8 3.5E-18 1.2E-22 172.1 12.7 100 191-292 28-133 (306)
64 2p1m_B Transport inhibitor res 99.8 9.9E-21 3.4E-25 210.0 -6.9 238 157-431 61-324 (594)
65 2z66_A Variable lymphocyte rec 99.7 4.6E-18 1.6E-22 171.2 12.0 224 162-432 28-259 (306)
66 1wwl_A Monocyte differentiatio 99.7 8E-19 2.7E-23 177.0 6.3 83 187-272 39-132 (312)
67 3oja_A Leucine-rich immune mol 99.7 2.5E-18 8.5E-23 184.0 9.1 147 551-701 120-269 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.7 4.3E-18 1.5E-22 172.1 9.1 144 553-700 122-268 (317)
69 1ozn_A Reticulon 4 receptor; N 99.7 7.3E-17 2.5E-21 160.5 13.4 200 191-432 32-236 (285)
70 2p1m_B Transport inhibitor res 99.7 6.5E-20 2.2E-24 203.4 -11.8 130 159-292 102-242 (594)
71 4ay9_X Follicle-stimulating ho 99.7 1.7E-15 6E-20 155.1 21.2 77 552-631 178-255 (350)
72 1wwl_A Monocyte differentiatio 99.7 7.2E-17 2.5E-21 162.6 8.5 202 189-432 93-307 (312)
73 1p9a_G Platelet glycoprotein I 99.7 1E-15 3.4E-20 152.0 15.4 175 191-432 31-206 (290)
74 4ay9_X Follicle-stimulating ho 99.7 7.4E-15 2.5E-19 150.4 22.2 238 377-678 13-255 (350)
75 2z62_A TOLL-like receptor 4, v 99.6 8.7E-16 3E-20 151.9 14.1 201 163-432 29-235 (276)
76 2o6q_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 146.5 18.7 172 192-432 17-192 (270)
77 3oja_A Leucine-rich immune mol 99.6 2.3E-16 7.8E-21 168.8 10.3 197 185-433 52-249 (487)
78 2z62_A TOLL-like receptor 4, v 99.6 1.3E-15 4.5E-20 150.6 14.6 101 191-292 28-131 (276)
79 2xwt_C Thyrotropin receptor; s 99.6 7.7E-15 2.6E-19 141.6 18.7 207 385-681 23-238 (239)
80 2xwt_C Thyrotropin receptor; s 99.6 2E-15 6.7E-20 145.8 14.5 205 462-703 19-235 (239)
81 3rfs_A Internalin B, repeat mo 99.6 2.2E-15 7.6E-20 148.4 14.8 176 189-432 39-216 (272)
82 1h6u_A Internalin H; cell adhe 99.6 7.1E-16 2.4E-20 154.8 11.5 189 190-432 40-228 (308)
83 1p9a_G Platelet glycoprotein I 99.6 3.6E-15 1.2E-19 148.0 16.2 176 187-432 6-183 (290)
84 2o6q_A Variable lymphocyte rec 99.6 7.4E-15 2.5E-19 144.6 16.7 175 191-432 37-216 (270)
85 3rfs_A Internalin B, repeat mo 99.6 6.6E-15 2.3E-19 145.0 12.5 199 158-438 37-239 (272)
86 4glp_A Monocyte differentiatio 99.6 1E-14 3.5E-19 146.7 13.0 205 189-432 89-305 (310)
87 3m19_A Variable lymphocyte rec 99.6 5.7E-14 2E-18 136.5 16.1 172 192-432 15-190 (251)
88 2a5y_B CED-4; apoptosis; HET: 99.5 5.8E-16 2E-20 168.0 1.1 110 8-123 349-472 (549)
89 1h6u_A Internalin H; cell adhe 99.5 1.9E-14 6.5E-19 144.3 11.9 193 159-411 38-230 (308)
90 1h6t_A Internalin B; cell adhe 99.5 2E-14 7E-19 142.7 11.1 168 189-432 44-211 (291)
91 2ast_B S-phase kinase-associat 99.5 7.1E-16 2.4E-20 157.6 -4.1 223 163-431 48-282 (336)
92 4glp_A Monocyte differentiatio 99.5 1.3E-13 4.5E-18 138.6 12.2 127 549-680 167-305 (310)
93 4ezg_A Putative uncharacterize 99.5 7E-14 2.4E-18 130.3 9.1 103 188-292 41-143 (197)
94 2ca6_A RAN GTPase-activating p 99.5 3.3E-16 1.1E-20 163.1 -7.5 214 185-432 26-285 (386)
95 3m19_A Variable lymphocyte rec 99.5 9.3E-13 3.2E-17 127.9 16.9 133 546-681 54-191 (251)
96 1m9s_A Internalin B; cell inva 99.5 1.1E-13 3.9E-18 150.8 11.2 99 188-292 40-138 (605)
97 2ast_B S-phase kinase-associat 99.5 6.4E-15 2.2E-19 150.4 1.2 104 189-292 91-202 (336)
98 1h6t_A Internalin B; cell adhe 99.4 3.7E-13 1.3E-17 133.6 12.3 173 158-412 42-214 (291)
99 1xeu_A Internalin C; cellular 99.4 9.7E-14 3.3E-18 135.5 7.4 56 373-432 128-183 (263)
100 4ezg_A Putative uncharacterize 99.4 9.1E-13 3.1E-17 122.6 12.1 145 551-702 44-189 (197)
101 2ca6_A RAN GTPase-activating p 99.4 1.1E-14 3.8E-19 151.6 -1.8 246 156-433 26-315 (386)
102 3cvr_A Invasion plasmid antige 99.4 1.9E-12 6.6E-17 139.4 14.7 90 192-294 60-149 (571)
103 3goz_A Leucine-rich repeat-con 99.4 4E-15 1.4E-19 153.3 -7.2 89 183-272 14-120 (362)
104 3e6j_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 124.2 11.0 129 162-297 40-171 (229)
105 1m9s_A Internalin B; cell inva 99.4 1.5E-12 5.2E-17 141.9 11.9 123 158-293 39-161 (605)
106 2v9t_B SLIT homolog 2 protein 99.4 1.4E-12 4.9E-17 123.5 10.2 129 162-296 32-163 (220)
107 3e6j_A Variable lymphocyte rec 99.4 5.3E-12 1.8E-16 120.4 14.0 76 194-272 22-99 (229)
108 2ell_A Acidic leucine-rich nuc 99.4 1E-12 3.4E-17 119.0 8.5 132 162-300 24-162 (168)
109 3cvr_A Invasion plasmid antige 99.4 2.2E-12 7.4E-17 139.0 12.4 89 191-293 80-168 (571)
110 3goz_A Leucine-rich repeat-con 99.4 6.5E-14 2.2E-18 144.2 0.1 241 156-432 15-295 (362)
111 2o6s_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 119.9 11.9 74 195-271 11-86 (208)
112 1xeu_A Internalin C; cellular 99.3 1.3E-12 4.4E-17 127.5 8.7 141 550-702 40-180 (263)
113 2v9t_B SLIT homolog 2 protein 99.3 7.8E-12 2.7E-16 118.4 12.9 95 194-291 14-110 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.3 3.8E-12 1.3E-16 120.6 10.2 131 162-296 32-164 (220)
115 2je0_A Acidic leucine-rich nuc 99.3 1.4E-12 4.8E-17 115.3 6.5 125 161-292 16-147 (149)
116 2o6s_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 116.6 12.2 129 161-296 27-159 (208)
117 2xot_A Amphoterin-induced prot 99.3 4.3E-12 1.5E-16 130.3 9.8 61 372-432 135-200 (361)
118 4b8c_D Glucose-repressible alc 99.3 5.6E-12 1.9E-16 141.1 10.2 115 182-298 215-329 (727)
119 1a9n_A U2A', U2A'; complex (nu 99.3 5.6E-12 1.9E-16 114.9 8.3 132 156-296 13-151 (176)
120 2v70_A SLIT-2, SLIT homolog 2 99.3 1.7E-11 5.9E-16 116.0 11.5 133 136-274 31-166 (220)
121 2ell_A Acidic leucine-rich nuc 99.2 8.4E-12 2.9E-16 112.8 6.8 107 189-297 22-132 (168)
122 2je0_A Acidic leucine-rich nuc 99.2 5E-12 1.7E-16 111.7 5.1 109 189-299 15-127 (149)
123 2xot_A Amphoterin-induced prot 99.2 6E-11 2.1E-15 121.8 12.0 129 549-680 62-200 (361)
124 1w8a_A SLIT protein; signaling 99.2 3.1E-11 1.1E-15 111.6 8.8 104 192-296 30-137 (192)
125 1a9n_A U2A', U2A'; complex (nu 99.2 2.4E-11 8.2E-16 110.7 6.4 108 187-298 15-126 (176)
126 1dce_A Protein (RAB geranylger 99.2 3.6E-11 1.2E-15 130.3 8.6 106 192-300 442-548 (567)
127 1vt4_I APAF-1 related killer D 99.2 2.1E-11 7.3E-16 134.8 6.6 94 2-116 343-437 (1221)
128 1dce_A Protein (RAB geranylger 99.2 6.4E-11 2.2E-15 128.3 9.9 101 187-290 459-565 (567)
129 2wfh_A SLIT homolog 2 protein 99.1 9.7E-11 3.3E-15 108.1 9.3 104 191-296 31-137 (193)
130 4b8c_D Glucose-repressible alc 99.1 3.5E-11 1.2E-15 134.7 7.2 120 156-282 218-337 (727)
131 2wfh_A SLIT homolog 2 protein 99.1 1.6E-10 5.4E-15 106.7 10.0 103 194-299 13-116 (193)
132 1w8a_A SLIT protein; signaling 99.1 1.5E-10 5.2E-15 106.9 9.0 102 194-297 11-114 (192)
133 2r9u_A Variable lymphocyte rec 99.1 2.6E-10 8.9E-15 103.2 9.8 99 194-296 15-116 (174)
134 3g39_A Variable lymphocyte rec 99.1 5.3E-10 1.8E-14 100.8 9.9 100 193-296 11-113 (170)
135 2o6r_A Variable lymphocyte rec 99.0 8.1E-10 2.8E-14 100.6 9.8 104 191-296 28-135 (177)
136 3sfz_A APAF-1, apoptotic pepti 99.0 2.5E-10 8.7E-15 137.8 7.7 89 22-122 363-452 (1249)
137 2o6r_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 100.5 9.0 108 161-274 27-137 (177)
138 1ds9_A Outer arm dynein; leuci 99.0 4.9E-12 1.7E-16 117.8 -6.4 84 187-272 66-151 (198)
139 1ds9_A Outer arm dynein; leuci 99.0 3.3E-12 1.1E-16 118.9 -8.0 108 185-296 42-151 (198)
140 3sb4_A Hypothetical leucine ri 99.0 5.6E-09 1.9E-13 105.6 14.7 97 598-700 225-327 (329)
141 2r9u_A Variable lymphocyte rec 99.0 1.7E-09 5.7E-14 97.9 9.4 82 191-273 33-117 (174)
142 3sb4_A Hypothetical leucine ri 98.9 9.8E-09 3.4E-13 103.8 14.5 118 552-675 203-327 (329)
143 3g39_A Variable lymphocyte rec 98.9 3E-09 1E-13 95.9 9.3 82 191-273 30-114 (170)
144 1z6t_A APAF-1, apoptotic prote 98.7 1.2E-08 4.2E-13 112.2 8.0 87 21-119 362-449 (591)
145 4fdw_A Leucine rich hypothetic 98.7 1.2E-06 4.1E-11 90.4 22.1 58 594-656 295-355 (401)
146 2ifg_A High affinity nerve gro 98.7 4.4E-08 1.5E-12 99.9 9.0 95 196-293 13-111 (347)
147 4fs7_A Uncharacterized protein 98.6 4.3E-06 1.5E-10 86.6 23.6 123 156-291 65-191 (394)
148 4fdw_A Leucine rich hypothetic 98.6 1.1E-06 3.9E-11 90.6 17.7 104 182-292 127-233 (401)
149 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.6E-12 97.0 8.9 86 187-273 27-115 (347)
150 4fs7_A Uncharacterized protein 98.5 4.6E-06 1.6E-10 86.3 20.4 77 573-655 295-375 (394)
151 3e4g_A ATP synthase subunit S, 98.2 5.3E-07 1.8E-11 79.7 3.4 86 576-661 62-154 (176)
152 3un9_A NLR family member X1; l 98.0 6.1E-07 2.1E-11 91.7 -0.6 129 162-295 101-249 (372)
153 3un9_A NLR family member X1; l 98.0 1.6E-06 5.5E-11 88.5 1.5 137 137-275 101-253 (372)
154 2ra8_A Uncharacterized protein 97.9 4.1E-06 1.4E-10 84.7 3.6 129 548-680 169-318 (362)
155 3e4g_A ATP synthase subunit S, 97.9 2.6E-06 8.9E-11 75.3 1.6 94 590-684 52-154 (176)
156 1io0_A Tropomodulin; LRR prote 97.8 7.1E-06 2.4E-10 74.6 3.3 58 187-244 61-128 (185)
157 2ra8_A Uncharacterized protein 97.8 7E-06 2.4E-10 83.0 3.3 182 473-680 137-341 (362)
158 3rw6_A Nuclear RNA export fact 97.8 3E-06 1E-10 81.0 0.1 78 212-291 168-257 (267)
159 4gt6_A Cell surface protein; l 97.8 0.00061 2.1E-08 70.3 17.2 106 157-271 58-170 (394)
160 3rw6_A Nuclear RNA export fact 97.8 1.7E-05 5.7E-10 75.9 4.9 81 187-268 166-258 (267)
161 4gt6_A Cell surface protein; l 97.8 0.0033 1.1E-07 64.7 22.7 86 183-271 55-147 (394)
162 1io0_A Tropomodulin; LRR prote 97.7 6.2E-06 2.1E-10 75.0 0.7 114 181-295 26-161 (185)
163 4h09_A Hypothetical leucine ri 97.4 0.02 6.7E-07 58.5 22.6 139 546-695 212-357 (379)
164 4h09_A Hypothetical leucine ri 97.1 0.017 5.9E-07 58.9 18.3 80 158-246 42-122 (379)
165 3rfe_A Platelet glycoprotein I 96.0 0.01 3.5E-07 49.7 6.0 51 195-247 12-65 (130)
166 3rfe_A Platelet glycoprotein I 95.1 0.031 1.1E-06 46.7 5.8 54 217-273 11-67 (130)
167 1pgv_A TMD-1, tropomodulin TMD 92.6 0.1 3.4E-06 46.9 4.3 34 214-247 70-108 (197)
168 1pgv_A TMD-1, tropomodulin TMD 91.5 0.13 4.5E-06 46.1 3.7 113 159-271 38-167 (197)
169 3lqv_P Splicing factor 3B subu 23.2 20 0.00067 21.8 0.2 9 46-54 30-38 (39)
170 2lz0_A Uncharacterized protein 21.2 1.5E+02 0.0052 22.6 5.1 43 635-679 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.5e-39 Score=363.74 Aligned_cols=509 Identities=18% Similarity=0.152 Sum_probs=287.4
Q ss_pred CCceEEEEEEcCccCc-ccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-cc---c
Q 046587 136 FERIRHASYTRGRYDG-KNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MS---F 210 (703)
Q Consensus 136 ~~~~r~l~~~~~~~~~-~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~---i 210 (703)
...++++.+..+.... ......+..+++|+.|.+.++. +....+...+.++++|++|++++|.+...+ .. +
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~----l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT----LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE----EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc----cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence 3456666665554321 1111256677777777776553 111112222355666666676666664442 22 4
Q ss_pred cCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCccc
Q 046587 211 EDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTL 290 (703)
Q Consensus 211 ~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 290 (703)
+++++|++|++++|.+....+ ++.+++|++|++++|.....+|. ++++++|++|++++|.....+|..++.+++|++|
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred ccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 556666666666665553322 25566666666666533333444 6666666666666665444555556666666666
Q ss_pred CeeEeecCCCCCChhhhhhhhccCC---------------------ceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587 291 SNFIVGKGETASGLEDLKCLNFLCD---------------------ELCMSGLENVNNPQNAREATVCEKHNLEALTLDW 349 (703)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~L~~L~~---------------------~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 349 (703)
++..+......... .+++|+.+.. .+.+. .+......+..+..+++|+.|+++.
T Consensus 253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls----~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS----GNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp ECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC----SSEEEECCCGGGGGCTTCCEEECCS
T ss_pred ECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc----CCcCCCccchHHhcCCCccEEECCC
Confidence 55443322110111 2222222210 00000 0011112233344445555555543
Q ss_pred cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCC-CCCcccCCCCCC-CccEEEEeccCCCCcCC-CCCC--cCccc
Q 046587 350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGA-RFPHWIGDPSFS-KMKVLKLENCHNCVSLP-SLGL--LSSLK 424 (703)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~-~L~~L~l~~~~~~~~l~-~l~~--l~~L~ 424 (703)
+... +.. ....+..+++|+.|+++++... .+|.++.. ++ +|+.|++++|...+..| .+.. +++|+
T Consensus 328 n~l~-----~~i---p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 328 NNFS-----GEL---PMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp SEEE-----EEC---CHHHHTTCTTCCEEECCSSEEEECCCTTHHH--HTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred Cccc-----CcC---CHHHHhcCCCCCEEeCcCCccCccccHHHHh--hhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 3200 000 0111334555555555555443 44444433 33 55555555555443333 2322 45566
Q ss_pred eeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCC---CCCCccEEEEecCCCccccceeeEEEcCC
Q 046587 425 HLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPE---LLPSLETLVVSKCKKLFIRAEWMLYIRDR 501 (703)
Q Consensus 425 ~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~---~l~~L~~L~l~~~~~l~~~~~~~~~i~~~ 501 (703)
+|++++|.....++..+.. +++|+.|+++.+.. .+.+|. .+++|+.|++++|....
T Consensus 398 ~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~N~l---~~~~p~~l~~l~~L~~L~L~~n~l~~------------ 456 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSN------CSELVSLHLSFNYL---SGTIPSSLGSLSKLRDLKLWLNMLEG------------ 456 (768)
T ss_dssp EEECCSSEEEEECCGGGGG------CTTCCEEECCSSEE---ESCCCGGGGGCTTCCEEECCSSCCCS------------
T ss_pred EEECCCCccccccCHHHhc------CCCCCEEECcCCcc---cCcccHHHhcCCCCCEEECCCCcccC------------
Confidence 6666555444344333322 55555554433322 222232 34566666666654110
Q ss_pred CccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEE
Q 046587 502 DCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLE 581 (703)
Q Consensus 502 ~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 581 (703)
.+|.. +.++++|+.++++.|.+.+..+. .+..+++|++|++++|...+.+|..++.+++|++|+
T Consensus 457 ---------~~p~~-----~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 457 ---------EIPQE-----LMYVKTLETLILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp ---------CCCGG-----GGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ---------cCCHH-----HcCCCCceEEEecCCcccCcCCH--HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 11111 22345566666666666544333 566777788888888887778888887888888888
Q ss_pred eecCcCcccccccCCCCCCCcEEEecCCCCCCccCCC-------------------------------------------
Q 046587 582 IRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPER------------------------------------------- 618 (703)
Q Consensus 582 l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~------------------------------------------- 618 (703)
+++|.....+|..+..+++|+.|++++|+....+|..
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 8888777788888888888888888888654344320
Q ss_pred ----------------------------CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCC
Q 046587 619 ----------------------------GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPT 669 (703)
Q Consensus 619 ----------------------------~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~ 669 (703)
...++|+.|++++|.....+|..+.++++|+.|++++|.--+.+|.. +.++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 11357899999998777789999999999999999999555577765 4578
Q ss_pred CcCeEEEecCCCCccccccCcCCCCceeeEEecC
Q 046587 670 SLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIVD 703 (703)
Q Consensus 670 ~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~ 703 (703)
+|+.|++++|.....+|.. +.++++|++|++++
T Consensus 681 ~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSN 713 (768)
T ss_dssp TCCEEECCSSCCEECCCGG-GGGCCCCSEEECCS
T ss_pred CCCEEECCCCcccCcCChH-HhCCCCCCEEECcC
Confidence 9999999998877788876 89999999999874
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-36 Score=338.34 Aligned_cols=491 Identities=17% Similarity=0.089 Sum_probs=317.7
Q ss_pred CCceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCcc-CccccCCC
Q 046587 136 FERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFEDLR 214 (703)
Q Consensus 136 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~ 214 (703)
+..++.+.+..+..... ....+.++++|+.|.+.++. ...+.+..|.++++|++|++++|.+..+ |..|++++
T Consensus 31 ~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-----l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCE-----IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCc-----ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 35566666655543221 12345667777777766554 2334455567777777777777777666 66677777
Q ss_pred cCceEeccCCCCcccc-ccccccccCcEEecCCCCCCc-ccCccccCCCcccEEeecCccccccCCccCCCCCCCc----
Q 046587 215 LLRLLNLADTDIRSLP-ESTCTLLNLEILILRNCSRLI-KLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQ---- 288 (703)
Q Consensus 215 ~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~---- 288 (703)
+|++|++++|.++.+| ..++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 7777777777776665 556777777777777763322 4566677777777777777754444444555555554
Q ss_pred ccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCC------------
Q 046587 289 TLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNS------------ 356 (703)
Q Consensus 289 ~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------------ 356 (703)
+|++..+.....+.......+|+.+ .+. .........+..+..+.+++.+.+.+.......
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L----~L~---~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHEL----TLR---GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEE----EEE---SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred eeeccCCCcceeCcccccCceeeee----ecc---CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhh
Confidence 3333333222221111111122221 111 111112334444555555555555432210000
Q ss_pred ------------CCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccc
Q 046587 357 ------------RDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLK 424 (703)
Q Consensus 357 ------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~ 424 (703)
.......... .+..+++|+.|++.++....+| ++.. +++|+.|++++|.. +.+|.+ .+++|+
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~l~-~l~~--~~~L~~L~l~~n~l-~~lp~~-~l~~L~ 331 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKYLE-DVPK--HFKWQSLSIIRCQL-KQFPTL-DLPFLK 331 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCCCC-CCCT--TCCCSEEEEESCCC-SSCCCC-CCSSCC
T ss_pred hhhccHhheecccccccccccc-ccccCCCCCEEEecCccchhhh-hccc--cccCCEEEcccccC-cccccC-CCCccc
Confidence 0000011112 2666789999999999998888 5654 88999999999988 777777 899999
Q ss_pred eeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCC---CCCCCccEEEEecCCCccccceeeEEEcCC
Q 046587 425 HLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLP---ELLPSLETLVVSKCKKLFIRAEWMLYIRDR 501 (703)
Q Consensus 425 ~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~---~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~ 501 (703)
.|++++|.....+. + ..+++|+.|+++-+...... .++ ..+++|+.|++++|.
T Consensus 332 ~L~l~~n~~~~~~~--~------~~l~~L~~L~ls~n~l~~~~-~~~~~~~~~~~L~~L~L~~n~--------------- 387 (606)
T 3vq2_A 332 SLTLTMNKGSISFK--K------VALPSLSYLDLSRNALSFSG-CCSYSDLGTNSLRHLDLSFNG--------------- 387 (606)
T ss_dssp EEEEESCSSCEECC--C------CCCTTCCEEECCSSCEEEEE-ECCHHHHCCSCCCEEECCSCS---------------
T ss_pred eeeccCCcCccchh--h------ccCCCCCEEECcCCccCCCc-chhhhhccCCcccEeECCCCc---------------
Confidence 99999987665441 1 34888888776655444331 112 357899999999886
Q ss_pred CccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEE
Q 046587 502 DCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLE 581 (703)
Q Consensus 502 ~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 581 (703)
+..++ . .+.++++|+.+++++|.+....+. ..+..+++|++|++++|......|..+..+++|++|+
T Consensus 388 --l~~~~-~---------~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 388 --AIIMS-A---------NFMGLEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp --EEEEC-C---------CCTTCTTCCEEECTTSEEESTTTT-TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred --cccch-h---------hccCCCCCCeeECCCCccCCccCh-hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 22222 1 133455666666666655544331 2566778899999999987777788888899999999
Q ss_pred eecCcCcc-cccccCCCCCCCcEEEecCCCCCCccCC-CCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCc
Q 046587 582 IRDCPELE-SILDGLPNLKCLQSIYIWKCPSLVSFPE-RGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNL 659 (703)
Q Consensus 582 l~~c~~l~-~~p~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 659 (703)
+++|.... .+|..+..+++|++|++++|......|. ...+++|+.|++++|......|..+.++++|++|++++| .+
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l 533 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RI 533 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cC
Confidence 99997665 3788899999999999999954444443 234789999999998766666889999999999999999 78
Q ss_pred ccCCCC--CCCCCcCeEEEecCCCCc
Q 046587 660 VSFPEE--GFPTSLTSLRIGDFKMYK 683 (703)
Q Consensus 660 ~~l~~~--~~~~~L~~L~i~~c~~l~ 683 (703)
+.+|.. .++++|+.|++++|+...
T Consensus 534 ~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 534 ETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred cccCHhHhhhcccCcEEEccCCCccc
Confidence 899876 234579999999988654
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-35 Score=334.98 Aligned_cols=525 Identities=14% Similarity=0.061 Sum_probs=292.1
Q ss_pred CCceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCc-cccCCC
Q 046587 136 FERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPM-SFEDLR 214 (703)
Q Consensus 136 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~ 214 (703)
+..++++.+..+..... ....+.++++|++|.+.++. .....+..|.++++|++|++++|.+..+|. +|++++
T Consensus 24 ~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNT-----ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp CTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSC-----CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCc-----cCccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 35667776666543321 22346667777777776554 223345556677777777777777777765 477777
Q ss_pred cCceEeccCCCCcccc-ccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccC--CCCCCCcccC
Q 046587 215 LLRLLNLADTDIRSLP-ESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGM--KELKNLQTLS 291 (703)
Q Consensus 215 ~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~ 291 (703)
+|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|......+..+ ..+++|++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 7777777777777665 457777777777777764444445556777777777777775433323222 2446677776
Q ss_pred eeEeecCCC-CCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCC
Q 046587 292 NFIVGKGET-ASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQ 370 (703)
Q Consensus 292 ~~~~~~~~~-~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 370 (703)
+..+..... +..+..+..+..+ .+................ ....+|+.|+++++.-. +. ....+.
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L----~l~~~~l~~~~~~~~~~~-l~~~~L~~L~L~~n~l~-----~~----~~~~~~ 243 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGL----FLNNVQLGPSLTEKLCLE-LANTSIRNLSLSNSQLS-----TT----SNTTFL 243 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEE----ECTTCCCHHHHHHHHHHH-HTTSCCCEEECTTSCCC-----EE----CTTTTG
T ss_pred CCCCcccccChhhhhhhhhhhhh----hccccccChhhHHHHHHH-hhhccccEEEccCCccc-----cc----ChhHhh
Confidence 654433221 1223333333322 111110000000000111 12356777777654311 00 011122
Q ss_pred CC--CCcceEEEeccCCCCCC-cccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeeccc---ccC
Q 046587 371 PH--KCIKKVAIRNYGGARFP-HWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESE---VYG 443 (703)
Q Consensus 371 ~~--~~L~~L~l~~~~~~~~p-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~---~~~ 443 (703)
.+ ++|+.|+++++....++ .++.. +++|+.|++++|...+..+ .++.+++|+.|++.++.....+... ...
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAW--LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred ccCcCCCCEEECCCCCcCccCcccccC--cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence 22 35888888888776654 44554 7888888888887766555 5788888888888765422111100 000
Q ss_pred CCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCC----CCCccEE
Q 046587 444 EGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRL----PASLKRL 519 (703)
Q Consensus 444 ~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~----~~~L~~L 519 (703)
......+++|+.|+++-+....+.......+++|+.|++++|..- +..++...+ .++|+.|
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~---------------~~~l~~~~f~~~~~~~L~~L 386 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS---------------LRTLTNETFVSLAHSPLHIL 386 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC---------------CCEECTTTTGGGTTSCCCEE
T ss_pred hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh---------------hhhcchhhhcccccCcCceE
Confidence 011234778888777665555443333346788999998887510 000010000 0234444
Q ss_pred EEe-------------cCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCc
Q 046587 520 EIE-------------NCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCP 586 (703)
Q Consensus 520 ~l~-------------~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 586 (703)
+++ ++++|+.++++.|.+....+. ..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 332 355666667766665432211 145666778888888886443334445556666666666664
Q ss_pred Cc--ccccccCCCCCCCcEEEecCCCCCCccCCC--CCCCCccEEEeccCCCCccccc---------ccCCCCCcceEee
Q 046587 587 EL--ESILDGLPNLKCLQSIYIWKCPSLVSFPER--GLPNTISRVGIGECDKLEALPN---------DLHKINSLRYLSI 653 (703)
Q Consensus 587 ~l--~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~lp~---------~~~~l~~L~~L~l 653 (703)
.. ..+|..+.++++|+.|++++|. +..++.. ..+++|+.|++++|. ++.++. .+.++++|++|++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEEC
Confidence 32 3456666677777777777763 4444432 235667777777643 333311 2456666777777
Q ss_pred ccCCCcccCCCCCC--CCCcCeEEEecCCCCccccccCcCCCCceeeEEec
Q 046587 654 QLCRNLVSFPEEGF--PTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIV 702 (703)
Q Consensus 654 ~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~ 702 (703)
++| .++.+|...+ +++|+.|++++| .++.++...+.++++|+.|+++
T Consensus 544 ~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 544 ESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECC
Confidence 766 5666665422 566777777664 3455665556666666666665
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-37 Score=350.17 Aligned_cols=110 Identities=17% Similarity=0.081 Sum_probs=56.2
Q ss_pred hhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCc-cccc--cccccccCcEEecCCCCCCcccCccc-cCCC
Q 046587 186 LLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIR-SLPE--STCTLLNLEILILRNCSRLIKLPPKM-RNLI 261 (703)
Q Consensus 186 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~ 261 (703)
.+..++.|++++++.+.+..+|..|+.+++|++|+|++|.+. .+|. .++++++|++|++++|......|..+ ++++
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 345555555555555555444555555555555555555554 3444 55555555555555553333344333 4555
Q ss_pred cccEEeecCccccccCCcc---CCCCCCCcccCeeEe
Q 046587 262 NLRHLDIRGAKLLKEMPFG---MKELKNLQTLSNFIV 295 (703)
Q Consensus 262 ~L~~L~l~~~~~~~~~p~~---i~~l~~L~~L~~~~~ 295 (703)
+|++|++++|......|.. ++++++|++|++..+
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 5555555555443333333 455555555554433
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-35 Score=327.76 Aligned_cols=478 Identities=18% Similarity=0.121 Sum_probs=326.7
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCcc-CccccCCCcCceEeccCCCCccc-cccccccccC
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSL-PESTCTLLNL 239 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L 239 (703)
++++.|.+.++. .....+..|.++++|++|++++|.+..+ |..|+++++|++|+|++|.++.+ |..++++++|
T Consensus 32 ~~l~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNP-----LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECCCCC-----cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 789999988775 3445566789999999999999999888 66899999999999999999977 7889999999
Q ss_pred cEEecCCCCCCcccC-ccccCCCcccEEeecCccccc-cCCccCCCCCCCcccCeeEeecCCC-CCChhhhhhhhccCCc
Q 046587 240 EILILRNCSRLIKLP-PKMRNLINLRHLDIRGAKLLK-EMPFGMKELKNLQTLSNFIVGKGET-ASGLEDLKCLNFLCDE 316 (703)
Q Consensus 240 ~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~-~~~~~~L~~L~~L~~~ 316 (703)
++|++++| .+..+| ..++++++|++|++++|.... .+|..++++++|++|++..+..... +..+..+.+++..-..
T Consensus 107 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 99999998 555555 679999999999999997654 5789999999999999877654432 3445666655431112
Q ss_pred eEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCC-----------
Q 046587 317 LCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGG----------- 385 (703)
Q Consensus 317 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----------- 385 (703)
+.+.. +.........+.. .+|+.|+++++.. ........+..++.++.+.+.....
T Consensus 186 L~l~~----n~l~~~~~~~~~~-~~L~~L~L~~n~~--------~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 186 LDMSL----NPIDFIQDQAFQG-IKLHELTLRGNFN--------SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp EECTT----CCCCEECTTTTTT-CEEEEEEEESCCS--------CHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred eeccC----CCcceeCcccccC-ceeeeeeccCCcc--------chhHHHHHhccccccccccccccccccCCcccccCh
Confidence 22211 1122222223333 3899999986541 1122233344555555555532211
Q ss_pred ----------------------CC-CCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecccccceeeccccc
Q 046587 386 ----------------------AR-FPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVY 442 (703)
Q Consensus 386 ----------------------~~-~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 442 (703)
.. .|. +. .+++|+.|++++|.. ..+|.+..+++|++|++++|.. +.++ .+
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~- 325 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFP-TL- 325 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCC-CC-
T ss_pred HHhhhhhhccHhheeccccccccccccc-cc--cCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccc-cC-
Confidence 11 121 22 256777777777665 3445666677777777777664 4443 11
Q ss_pred CCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEe
Q 046587 443 GEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIE 522 (703)
Q Consensus 443 ~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~ 522 (703)
.+++|+.|.+..+ ..........+++|+.|++++|. +..+.. .+. .+.
T Consensus 326 ------~l~~L~~L~l~~n--~~~~~~~~~~l~~L~~L~ls~n~-----------------l~~~~~--~~~-----~~~ 373 (606)
T 3vq2_A 326 ------DLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNA-----------------LSFSGC--CSY-----SDL 373 (606)
T ss_dssp ------CCSSCCEEEEESC--SSCEECCCCCCTTCCEEECCSSC-----------------EEEEEE--CCH-----HHH
T ss_pred ------CCCccceeeccCC--cCccchhhccCCCCCEEECcCCc-----------------cCCCcc--hhh-----hhc
Confidence 2666666554333 22222222356777777777664 111100 000 012
Q ss_pred cCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCcccc-ccccccCCccEEEeecCcCcccccccCCCCCCC
Q 046587 523 NCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLS-SGVQFLEALEFLEIRDCPELESILDGLPNLKCL 601 (703)
Q Consensus 523 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L 601 (703)
++++|+.++++.|.+.... ..+..+++|++|++++|......+ ..+..+++|++|++++|......|..+.++++|
T Consensus 374 ~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp CCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred cCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 2344444444444443322 266777889999999996655555 466788999999999998877788889999999
Q ss_pred cEEEecCCCCCCc-cCC-CCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC--CCCCCcCeEEEe
Q 046587 602 QSIYIWKCPSLVS-FPE-RGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE--GFPTSLTSLRIG 677 (703)
Q Consensus 602 ~~L~l~~c~~l~~-~~~-~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~ 677 (703)
++|++++|..... +|. ...+++|+.|++++|......|..+..+++|++|++++| .+..+++. ..+++|++|+++
T Consensus 451 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECT
T ss_pred CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECC
Confidence 9999999965543 443 345789999999998665666778899999999999999 66666333 347899999999
Q ss_pred cCCCCccccccCcCCCC-ceeeEEecC
Q 046587 678 DFKMYKTLVQWGLHRLT-SLGRLYIVD 703 (703)
Q Consensus 678 ~c~~l~~~~~~~l~~l~-~L~~L~l~~ 703 (703)
+|. ++.+|.. +..++ +|+.|++++
T Consensus 530 ~N~-l~~~p~~-~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 530 FNR-IETSKGI-LQHFPKSLAFFNLTN 554 (606)
T ss_dssp TSC-CCCEESC-GGGSCTTCCEEECCS
T ss_pred CCc-CcccCHh-HhhhcccCcEEEccC
Confidence 986 6788877 88887 599999874
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-35 Score=329.91 Aligned_cols=147 Identities=16% Similarity=0.088 Sum_probs=100.9
Q ss_pred cCCceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCcc-CccccCC
Q 046587 135 RFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFEDL 213 (703)
Q Consensus 135 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l 213 (703)
.+..++++.+..+..... ....+.++++|++|.+.++. ...+.+..|.++++|++|++++|.+..+ |..|+.+
T Consensus 31 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQ-----IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp SCTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CCCcCcEEEccCCccCcC-ChhHhccCccceEEECCCCc-----cceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 345667777666554322 23456777888888777664 2344556677888888888888887665 6677888
Q ss_pred CcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccC-ccccCCCcccEEeecCccccccCCccCCCCCCCc
Q 046587 214 RLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQ 288 (703)
Q Consensus 214 ~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 288 (703)
++|++|++++|.++.+ |..++++++|++|++++| .+..++ ..+..+++|++|++++|......|..++.+++|+
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 8888888888888776 566788888888888887 444432 2344588888888888865444455577777777
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.7e-35 Score=329.09 Aligned_cols=505 Identities=16% Similarity=0.141 Sum_probs=265.8
Q ss_pred CCceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-ccccCCC
Q 046587 136 FERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MSFEDLR 214 (703)
Q Consensus 136 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~ 214 (703)
...++.+.+..+..... ....+..+++|+.|.+.++. ...+++..|..+++|++|++++|.+..+| ..|++++
T Consensus 48 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-----l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNE-----LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred CCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCc-----cCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 45678888776654322 23456789999999998765 23455567899999999999999998886 6799999
Q ss_pred cCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccCc-cc--cCCCcccEEeecCccccccCCccCCCCCCCccc
Q 046587 215 LLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLPP-KM--RNLINLRHLDIRGAKLLKEMPFGMKELKNLQTL 290 (703)
Q Consensus 215 ~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i--~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 290 (703)
+|++|++++|.++.. |..++++++|++|++++| .+..++. .+ ..+++|++|++++|......|..++.+++|+.|
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 999999999999865 566899999999999998 5566654 34 367999999999997655566667777666655
Q ss_pred CeeEeec---------------------------CC-CCCChhhhhh--hhccCCceEEeCccccCChhchhhhhccccc
Q 046587 291 SNFIVGK---------------------------GE-TASGLEDLKC--LNFLCDELCMSGLENVNNPQNAREATVCEKH 340 (703)
Q Consensus 291 ~~~~~~~---------------------------~~-~~~~~~~L~~--L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~ 340 (703)
.+..+.. .. .+..+..++. |+.+ .+.. +......+..+..++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L----~Ls~----n~l~~~~~~~~~~l~ 272 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML----DLSY----NNLNVVGNDSFAWLP 272 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE----ECTT----SCCCEECTTTTTTCT
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE----ECCC----CCcCccCcccccCcc
Confidence 4322111 00 0111222211 2211 1100 111122223344555
Q ss_pred ccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCC------CCCc----ccCCCCCCCccEEEEeccCC
Q 046587 341 NLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGA------RFPH----WIGDPSFSKMKVLKLENCHN 410 (703)
Q Consensus 341 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~p~----~~~~~~~~~L~~L~l~~~~~ 410 (703)
+|+.|+++.+... ......+..+++|+.|++.++... .+|. .+. .+++|++|++++|..
T Consensus 273 ~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~--~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 273 QLEYFFLEYNNIQ---------HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ--WLKCLEHLNMEDNDI 341 (680)
T ss_dssp TCCEEECCSCCBS---------EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT--TCTTCCEEECCSCCB
T ss_pred cccEeeCCCCccC---------ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc--cCCCCCEEECCCCcc
Confidence 5666655543210 011223445566666666554322 2332 222 256677777776666
Q ss_pred CCcCC-CCCCcCccceeeeccccc-ceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCc
Q 046587 411 CVSLP-SLGLLSSLKHLAVKGLKK-LKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKL 488 (703)
Q Consensus 411 ~~~l~-~l~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l 488 (703)
.+..+ .+..+++|++|++++|.. +..++..... ....++|+.|.++-+....+.......+++|+.|++++|.--
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~---~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV---SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTG---GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhc---ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 55444 366677777777766542 2222211100 011245666554444433332222234677777777777521
Q ss_pred cccceeeEEEcCCCccccccccC--CCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCC--
Q 046587 489 FIRAEWMLYIRDRDCLTFIARRR--LPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPEL-- 564 (703)
Q Consensus 489 ~~~~~~~~~i~~~~~l~~~~~~~--~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-- 564 (703)
. .++... -.++|+.|++++ |......+. .+..+++|++|++++|...
T Consensus 419 ~----------------~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 419 Q----------------ELTGQEWRGLENIFEIYLSY-----------NKYLQLTRN--SFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp E----------------ECCSGGGTTCTTCCEEECCS-----------CSEEECCTT--TTTTCTTCCEEECTTSCCBCT
T ss_pred c----------------ccCcccccCcccccEEecCC-----------CCcceeChh--hhhcCcccccchhcccccccc
Confidence 1 011110 012444444433 332222221 3344444555555554321
Q ss_pred ccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCC----------CCCCCCccEEEeccCCC
Q 046587 565 TSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPE----------RGLPNTISRVGIGECDK 634 (703)
Q Consensus 565 ~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~----------~~~~~~L~~L~l~~c~~ 634 (703)
..+|..+..+++|++|++++|......+..+.++++|++|++++|. +..++. ...+++|+.|++++| .
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~ 547 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-G 547 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-C
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-C
Confidence 2344444455555555555553322222334555555555555552 222211 112345555555553 3
Q ss_pred Cccccc-ccCCCCCcceEeeccCCCcccCCCCCC--CCCcCeEEEecCCCCccccccCcC-CCCceeeEEec
Q 046587 635 LEALPN-DLHKINSLRYLSIQLCRNLVSFPEEGF--PTSLTSLRIGDFKMYKTLVQWGLH-RLTSLGRLYIV 702 (703)
Q Consensus 635 l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~l~-~l~~L~~L~l~ 702 (703)
++.+|. .+.++++|+.|++++| .++.+|...+ +++|+.|++++| .++.++...+. .+++|+.|+++
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECT
T ss_pred CCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEcc
Confidence 444443 2455555555555555 4555554422 355555555554 23333322233 34555555544
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-33 Score=311.82 Aligned_cols=465 Identities=15% Similarity=0.070 Sum_probs=308.7
Q ss_pred cccEEecCCCCCCcc-CccccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccCccccCCCcccEEeec
Q 046587 192 RLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIR 269 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 269 (703)
.+++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 689999999999888 67899999999999999999866 6789999999999999985555557789999999999999
Q ss_pred CccccccCCccCCCCCCCcccCeeEeecCCC-CCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccc--cce
Q 046587 270 GAKLLKEMPFGMKELKNLQTLSNFIVGKGET-ASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLE--ALT 346 (703)
Q Consensus 270 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~-~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~--~L~ 346 (703)
+|......|..++++++|++|++..+..... ...+..+++|+.+. +. .+.........+..+.+|+ .|+
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~----L~----~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD----FQ----NNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE----CC----SSCCCEECHHHHHTTTTCCSEEEE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE----cc----cCcccccChhhhhhhcccceeEEe
Confidence 9975544466799999999999887765542 12222355555442 21 1223344455677788888 455
Q ss_pred EEccCCCCCCCCchhhH--------------------------------------------hhhhcCCCCCCcceEEEec
Q 046587 347 LDWGSQFDNSRDGVVEE--------------------------------------------HVLEILQPHKCIKKVAIRN 382 (703)
Q Consensus 347 l~~~~~~~~~~~~~~~~--------------------------------------------~~~~~l~~~~~L~~L~l~~ 382 (703)
++.+.... ........ ..+..+.+ ..++.|++.+
T Consensus 186 l~~n~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~~L~~L~l~~ 263 (606)
T 3t6q_A 186 LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESINLQK 263 (606)
T ss_dssp CTTCCCCE-ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-SEEEEEECTT
T ss_pred cCCCccCc-cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc-CceeEEEeec
Confidence 54433110 00000000 00000000 1567777777
Q ss_pred cCCCCCCcc-cCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeec
Q 046587 383 YGGARFPHW-IGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIA 461 (703)
Q Consensus 383 ~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~ 461 (703)
+....++.. +.. +++|++|++++|......+.++.+++|++|++++|......+..+ ..+++|+.|.+.-+
T Consensus 264 n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 264 HYFFNISSNTFHC--FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA------SNFPSLTHLSIKGN 335 (606)
T ss_dssp CCCSSCCTTTTTT--CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG------GGCTTCSEEECCSC
T ss_pred CccCccCHHHhcc--ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh------hccCcCCEEECCCC
Confidence 777666554 333 778888888888765333357778888888888775433223222 23777777665544
Q ss_pred cCC-CcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCC
Q 046587 462 ECP-KLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSS 540 (703)
Q Consensus 462 ~~~-~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 540 (703)
... .+.......+++|+.|++++|.- ..+.. .+.. +.++++|+.++++.|.+...
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l-----------------~~~~~--~~~~-----~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDI-----------------ETSDC--CNLQ-----LRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCC-----------------CEEEE--STTT-----TTTCTTCCEEECCSCSCEEE
T ss_pred CcccccchhhhhccCcCCEEECCCCcc-----------------ccccC--cchh-----cccCCCCCEEECCCCcCCcC
Confidence 332 12112223577888888887752 11110 0000 22344555555555544433
Q ss_pred CCCCCCCCCcccccEEEEecCCCCccccc-cccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCc-cCC-
Q 046587 541 SPSPASSSSPVMLQHLSIENCPELTSLSS-GVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVS-FPE- 617 (703)
Q Consensus 541 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~-~~~- 617 (703)
.+. .+..+++|++|++++|......+. .+..+++|++|++++|......|..+..+++|++|++++|..... ++.
T Consensus 392 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 392 KTE--AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp CTT--TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred CHH--HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 332 566777899999999865544443 366788999999999977666678888999999999999865431 222
Q ss_pred --CCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC--CCCCCcCeEEEecCCCCccccccCcCCC
Q 046587 618 --RGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE--GFPTSLTSLRIGDFKMYKTLVQWGLHRL 693 (703)
Q Consensus 618 --~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~~~~~~~l~~l 693 (703)
...+++|+.|++++|......|..+..+++|++|++++| .+..++.. ..+++| .|++++|... .+++..+..+
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~-~~~~~~~~~l 546 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHIS-IILPSLLPIL 546 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCC-CCCGGGHHHH
T ss_pred hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCccc-ccCHhhcccC
Confidence 233678999999997655555778899999999999999 56655443 336788 8999998654 4444447888
Q ss_pred CceeeEEecC
Q 046587 694 TSLGRLYIVD 703 (703)
Q Consensus 694 ~~L~~L~l~~ 703 (703)
++|+.|++++
T Consensus 547 ~~L~~L~l~~ 556 (606)
T 3t6q_A 547 SQQRTINLRQ 556 (606)
T ss_dssp HTSSEEECTT
T ss_pred CCCCEEeCCC
Confidence 9999999874
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-33 Score=307.68 Aligned_cols=459 Identities=17% Similarity=0.174 Sum_probs=270.0
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCcccccc-ccccccC
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSLPES-TCTLLNL 239 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L 239 (703)
++++.|.+.++. .....+..|.++++|++|++++|.+..++ ..|+.+++|++|++++|.++.+|.. ++++++|
T Consensus 26 ~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNK-----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSC-----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCc-----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 456666665554 22233445666677777777777766553 4566677777777777776666544 6667777
Q ss_pred cEEecCCCCCCc--ccCccccCCCcccEEeecCccccccCC-ccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCc
Q 046587 240 EILILRNCSRLI--KLPPKMRNLINLRHLDIRGAKLLKEMP-FGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDE 316 (703)
Q Consensus 240 ~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~ 316 (703)
++|++++| .+. ..|..++++++|++|++++|.....+| ..++++++|++|++..+....
T Consensus 101 ~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----------------- 162 (549)
T 2z81_A 101 KYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN----------------- 162 (549)
T ss_dssp CEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-----------------
T ss_pred cEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-----------------
Confidence 77777766 333 234556677777777777665444554 346666666666654433221
Q ss_pred eEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCC---CcccC
Q 046587 317 LCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARF---PHWIG 393 (703)
Q Consensus 317 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---p~~~~ 393 (703)
..+..+..+++|+.|+++++.. ...... .+..+++|+.|+++++....+ |.++.
T Consensus 163 --------------~~~~~l~~l~~L~~L~l~~n~~------~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 219 (549)
T 2z81_A 163 --------------YQSQSLKSIRDIHHLTLHLSES------AFLLEI---FADILSSVRYLELRDTNLARFQFSPLPVD 219 (549)
T ss_dssp --------------ECTTTTTTCSEEEEEEEECSBS------TTHHHH---HHHSTTTBSEEEEESCBCTTCCCCCCSSC
T ss_pred --------------cChhhhhccccCceEecccCcc------cccchh---hHhhcccccEEEccCCccccccccccchh
Confidence 1122344445555555554331 001111 112355666677766655543 22222
Q ss_pred CCCCCCccEEEEeccCCCCcCC-----CCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCccc
Q 046587 394 DPSFSKMKVLKLENCHNCVSLP-----SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSG 468 (703)
Q Consensus 394 ~~~~~~L~~L~l~~~~~~~~l~-----~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~ 468 (703)
. .+++|+.|++++|......+ .+..+++|+.+++.+|..................+++|+.|.+.-...+....
T Consensus 220 ~-~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 298 (549)
T 2z81_A 220 E-VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298 (549)
T ss_dssp C-CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG
T ss_pred h-hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh
Confidence 2 35667777777665432211 23455667777777664221100000000111234555554443333222210
Q ss_pred --CCC---CCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCC
Q 046587 469 --QLP---ELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPS 543 (703)
Q Consensus 469 --~~~---~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~ 543 (703)
.++ ..+++|+.|++++|. +..+|... ..++++|+.++++.|.+.+..+.
T Consensus 299 ~~~l~~~~~~~~~L~~L~l~~n~-----------------l~~ip~~~---------~~~l~~L~~L~Ls~N~l~~~~~~ 352 (549)
T 2z81_A 299 FYDLSTVYSLLEKVKRITVENSK-----------------VFLVPCSF---------SQHLKSLEFLDLSENLMVEEYLK 352 (549)
T ss_dssp SCCCCHHHHHSTTCCEEEEESSC-----------------CCCCCHHH---------HHHCTTCCEEECCSSCCCHHHHH
T ss_pred cccchhhhhhcccceEEEeccCc-----------------cccCCHHH---------HhcCccccEEEccCCcccccccc
Confidence 000 124567777777765 22222211 01233444444444433321100
Q ss_pred -CCCCCCcccccEEEEecCCCCcccc---ccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCC
Q 046587 544 -PASSSSPVMLQHLSIENCPELTSLS---SGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERG 619 (703)
Q Consensus 544 -~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~ 619 (703)
...+..+++|++|++++|.. +.++ ..+..+++|++|++++| .++.+|..+..+++|++|++++|. +..++. .
T Consensus 353 ~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~-~ 428 (549)
T 2z81_A 353 NSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT-C 428 (549)
T ss_dssp HHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCT-T
T ss_pred chhhhhccccCcEEEccCCcc-cccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccc-h
Confidence 11355667799999999954 4443 33567889999999998 566899999999999999999985 666664 3
Q ss_pred CCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCCCCCcCeEEEecCCCCccccccCcCCCCceeeE
Q 046587 620 LPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRL 699 (703)
Q Consensus 620 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L 699 (703)
.+++|+.|++++|. ++.++ ..+++|++|++++| +++.+|..+.+++|+.|++++|. ++.++...+.++++|+.|
T Consensus 429 ~~~~L~~L~Ls~N~-l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 429 IPQTLEVLDVSNNN-LDSFS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp SCTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEE
T ss_pred hcCCceEEECCCCC-hhhhc---ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCc-cCCcCHHHHhcCcccCEE
Confidence 46789999999964 55554 47899999999999 88899987778999999999985 455555558999999999
Q ss_pred EecC
Q 046587 700 YIVD 703 (703)
Q Consensus 700 ~l~~ 703 (703)
++++
T Consensus 503 ~l~~ 506 (549)
T 2z81_A 503 WLHT 506 (549)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9874
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=308.09 Aligned_cols=502 Identities=15% Similarity=0.083 Sum_probs=292.7
Q ss_pred cCCceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCcc-CccccCC
Q 046587 135 RFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFEDL 213 (703)
Q Consensus 135 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l 213 (703)
.+..++.+.+..+..... ....+..+++|+.|.+.++. ....+.+..|.++++|++|+|++|.+..+ |..|+++
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~----~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQY----TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTC----CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCC----CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 456777777777654322 23456778888888887663 13334456678888888888888888766 7778888
Q ss_pred CcCceEeccCCCCcc-cccc--ccccccCcEEecCCCCCCcccC-ccccCCCcccEEeecCccccccCCccCCCC--CCC
Q 046587 214 RLLRLLNLADTDIRS-LPES--TCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIRGAKLLKEMPFGMKEL--KNL 287 (703)
Q Consensus 214 ~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l--~~L 287 (703)
.+|++|+|++|.++. +|.. ++++++|++|+|++|......| ..++++++|++|++++|......|..++.+ ++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 888888888888774 4544 7888888888888874333223 457888888888888886655566666666 677
Q ss_pred cccCeeEeecCC-CCCChhhhhh------hhccCCceEEeCccccCChhchhhhhcc---cccccccceEEccCCCCCCC
Q 046587 288 QTLSNFIVGKGE-TASGLEDLKC------LNFLCDELCMSGLENVNNPQNAREATVC---EKHNLEALTLDWGSQFDNSR 357 (703)
Q Consensus 288 ~~L~~~~~~~~~-~~~~~~~L~~------L~~L~~~l~i~~~~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~ 357 (703)
+.|++..+.... .+..+..+.. |+.+ .+... .........+. ...++..+.+..+.......
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L----~Ls~n----~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL----DVSGN----GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE----BCSSC----CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEE----ecCCC----cCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 777765554322 1122222211 2211 11111 00111111111 12334444443111000000
Q ss_pred CchhhHhhhhcCCC--CCCcceEEEeccCCCCCC-cccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeeccccc
Q 046587 358 DGVVEEHVLEILQP--HKCIKKVAIRNYGGARFP-HWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKK 433 (703)
Q Consensus 358 ~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~p-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~ 433 (703)
...........+.. .++++.|+++++....++ .++.. +++|+.|++++|......+ .++.+++|++|++++|..
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET--LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS--CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc--CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 00000001112222 368999999988776654 44443 8899999999998876655 588899999999998864
Q ss_pred ceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCC
Q 046587 434 LKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLP 513 (703)
Q Consensus 434 l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~ 513 (703)
....+..+ ..+++|+.|+++-+.+..+.......+++|+.|++++|. +..++. .
T Consensus 327 ~~~~~~~~------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-----------------l~~i~~---~ 380 (844)
T 3j0a_A 327 GELYSSNF------YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-----------------LTTIHF---I 380 (844)
T ss_dssp SCCCSCSC------SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-----------------SCCCSS---C
T ss_pred CccCHHHh------cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-----------------CCcccC---C
Confidence 33333333 237888888777666655544334568899999999886 222221 2
Q ss_pred CCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccc--cccccCCccEEEeecCcCcccc
Q 046587 514 ASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSS--GVQFLEALEFLEIRDCPELESI 591 (703)
Q Consensus 514 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~ 591 (703)
++|+.+.++++. +..+ . .....++.|++++|.. ..++. .+..+++|++|++++|......
T Consensus 381 ~~L~~L~l~~N~-l~~l----------~------~~~~~l~~L~ls~N~l-~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 442 (844)
T 3j0a_A 381 PSIPDIFLSGNK-LVTL----------P------KINLTANLIHLSENRL-ENLDILYFLLRVPHLQILILNQNRFSSCS 442 (844)
T ss_dssp CSCSEEEEESCC-CCCC----------C------CCCTTCCEEECCSCCC-CSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred CCcchhccCCCC-cccc----------c------ccccccceeecccCcc-ccCchhhhhhcCCccceeeCCCCcccccc
Confidence 356666665542 2211 1 0122367777777643 32222 1235567777777777433221
Q ss_pred c-ccCCCCCCCcEEEecCCCCCCccCC-------CCCCCCccEEEeccCCCCccc-ccccCCCCCcceEeeccCCCcccC
Q 046587 592 L-DGLPNLKCLQSIYIWKCPSLVSFPE-------RGLPNTISRVGIGECDKLEAL-PNDLHKINSLRYLSIQLCRNLVSF 662 (703)
Q Consensus 592 p-~~~~~l~~L~~L~l~~c~~l~~~~~-------~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l 662 (703)
+ ..+..+++|+.|++++|..- ..+. ...+++|+.|++++|. ++.+ |..+.++++|+.|++++| .++.+
T Consensus 443 ~~~~~~~~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l 519 (844)
T 3j0a_A 443 GDQTPSENPSLEQLFLGENMLQ-LAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGLSLNSN-RLTVL 519 (844)
T ss_dssp SSSSSCSCTTCCBCEEESCCCS-SSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCTTSSSSCCSCSEEEEESC-CCSSC
T ss_pred cccccccCCccccccCCCCccc-cccccccchhhhcCcccccEEECCCCc-ccccChhHccchhhhheeECCCC-CCCcc
Confidence 1 12445677777777776432 2211 1124667777777754 4444 344667777777777777 67777
Q ss_pred CCCCCCCCcCeEEEecCCCCccccccCcCCCCceeeEEec
Q 046587 663 PEEGFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIV 702 (703)
Q Consensus 663 ~~~~~~~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~ 702 (703)
+...++++|+.|++++|......+.. +++|+.|+++
T Consensus 520 ~~~~~~~~L~~L~Ls~N~l~~~~~~~----~~~L~~l~l~ 555 (844)
T 3j0a_A 520 SHNDLPANLEILDISRNQLLAPNPDV----FVSLSVLDIT 555 (844)
T ss_dssp CCCCCCSCCCEEEEEEECCCCCCSCC----CSSCCEEEEE
T ss_pred ChhhhhccccEEECCCCcCCCCChhH----hCCcCEEEec
Confidence 76666677777777776544433322 3456666664
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=308.40 Aligned_cols=454 Identities=18% Similarity=0.188 Sum_probs=253.2
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCcccc-ccccccccC
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSLP-ESTCTLLNL 239 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L 239 (703)
++++.|.+.++. ...+.+..|.++++|++|++++|.+..++ ..|+++++|++|++++|.++.+| ..++++.+|
T Consensus 28 ~~l~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCC-----CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEccCCc-----cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 467777776654 23344556788888999999988887774 56888889999999998888775 578888999
Q ss_pred cEEecCCCCCCcccCc-cccCCCcccEEeecCccccc-cCCccCCCCCCCcccCeeEeecCCC-CCChhhhhhhhccCCc
Q 046587 240 EILILRNCSRLIKLPP-KMRNLINLRHLDIRGAKLLK-EMPFGMKELKNLQTLSNFIVGKGET-ASGLEDLKCLNFLCDE 316 (703)
Q Consensus 240 ~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~-~~~~~~L~~L~~L~~~ 316 (703)
++|++++| .+..+|. .++++++|++|++++|.... .+|..++++++|++|++..+..... +..+..+.+|....
T Consensus 103 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~-- 179 (570)
T 2z63_A 103 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN-- 179 (570)
T ss_dssp CEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC--
T ss_pred cccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh--
Confidence 99999887 5666664 58888899999998886544 4678888888888887654433221 11222222221110
Q ss_pred eEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCC--CCCcccCC
Q 046587 317 LCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGA--RFPHWIGD 394 (703)
Q Consensus 317 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~p~~~~~ 394 (703)
..++++.+.. ... ....+.. ..|+.|++.++... .++.++..
T Consensus 180 --------------------------~~L~l~~n~l-----~~~----~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~ 223 (570)
T 2z63_A 180 --------------------------LSLDLSLNPM-----NFI----QPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQG 223 (570)
T ss_dssp --------------------------CEEECTTCCC-----CEE----CTTTTTT-CEEEEEEEESCCSCTTHHHHHHHT
T ss_pred --------------------------hhcccCCCCc-----eec----CHHHhcc-CcceeEecccccccccchhhhhcC
Confidence 2223322110 000 0111222 26888888776321 11111111
Q ss_pred CCCC--------------------------------CccEEEEecc-CCCCcCC-CCCCcCccceeeecccccceeeccc
Q 046587 395 PSFS--------------------------------KMKVLKLENC-HNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESE 440 (703)
Q Consensus 395 ~~~~--------------------------------~L~~L~l~~~-~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~ 440 (703)
++ .++.+++.++ ......+ .++.+++|+.|++++|. ++.++..
T Consensus 224 --l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~ 300 (570)
T 2z63_A 224 --LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDF 300 (570)
T ss_dssp --TTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBC
T ss_pred --ccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhh
Confidence 11 2334444444 2222222 35556666677666654 2233322
Q ss_pred ccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEE
Q 046587 441 VYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLE 520 (703)
Q Consensus 441 ~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~ 520 (703)
+. .+ +|+.|.+.-+....+. ...+++|+.|++++|.... .++. ...++|+.|+
T Consensus 301 ~~------~~-~L~~L~l~~n~~~~l~---~~~l~~L~~L~l~~n~~~~----------------~~~~-~~~~~L~~L~ 353 (570)
T 2z63_A 301 SY------NF-GWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGN----------------AFSE-VDLPSLEFLD 353 (570)
T ss_dssp CS------CC-CCSEEEEESCBCSSCC---BCBCSSCCEEEEESCBSCC----------------BCCC-CBCTTCCEEE
T ss_pred hc------cC-CccEEeeccCcccccC---cccccccCEEeCcCCcccc----------------cccc-ccCCCCCEEe
Confidence 21 13 5666555444333221 1346666666666665211 0010 1112444444
Q ss_pred EecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCccccc-ccCCCCC
Q 046587 521 IENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESIL-DGLPNLK 599 (703)
Q Consensus 521 l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p-~~~~~l~ 599 (703)
+++ +.+......+..+..+++|++|++++|. +..++..+..+++|++|++++|......| ..+.+++
T Consensus 354 l~~-----------n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 354 LSR-----------NGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CCS-----------SCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred CcC-----------CccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 433 3322211001123345557777777764 33344335566777777777765443333 3566677
Q ss_pred CCcEEEecCCCCCCccCCC-CCCCCccEEEeccCCCC-cccccccCCCCCcceEeeccCCCcccCCCC--CCCCCcCeEE
Q 046587 600 CLQSIYIWKCPSLVSFPER-GLPNTISRVGIGECDKL-EALPNDLHKINSLRYLSIQLCRNLVSFPEE--GFPTSLTSLR 675 (703)
Q Consensus 600 ~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~ 675 (703)
+|++|++++|......+.. ..+++|+.|++++|... ..+|..+..+++|++|++++| .++.+++. +.+++|++|+
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEe
Confidence 7777777777544433321 23567777777776543 356666777777777777777 55555333 2356777777
Q ss_pred EecCCCCccccccCcCCCCceeeEEecC
Q 046587 676 IGDFKMYKTLVQWGLHRLTSLGRLYIVD 703 (703)
Q Consensus 676 i~~c~~l~~~~~~~l~~l~~L~~L~l~~ 703 (703)
+++|. ++.++...+.++++|+.|++++
T Consensus 501 l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 501 MASNQ-LKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCc-CCCCCHHHhhcccCCcEEEecC
Confidence 77763 4444444467777777777653
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=301.00 Aligned_cols=147 Identities=21% Similarity=0.187 Sum_probs=119.3
Q ss_pred cCCceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-ccccCC
Q 046587 135 RFERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MSFEDL 213 (703)
Q Consensus 135 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l 213 (703)
.+..++++.+..+..... ....+..+++|++|.+.++. ...+.++.|.++++|++|++++|.+..+| ..|+.+
T Consensus 26 l~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SCSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCc-----CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 345688888877654322 22467889999999998775 33455677899999999999999998885 689999
Q ss_pred CcCceEeccCCCCccccc-cccccccCcEEecCCCCCCc-ccCccccCCCcccEEeecCccccccCCccCCCCCCC
Q 046587 214 RLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLI-KLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNL 287 (703)
Q Consensus 214 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 287 (703)
.+|++|++++|.++.+|. .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 999999999999998876 68999999999999984333 478999999999999999997655555667778877
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.5e-33 Score=307.45 Aligned_cols=367 Identities=15% Similarity=0.127 Sum_probs=233.1
Q ss_pred CCCCccccccccccccCcEEecCCCCCCcc------------------cCcccc--CCCcccEEeecCccccccCCccCC
Q 046587 223 DTDIRSLPESTCTLLNLEILILRNCSRLIK------------------LPPKMR--NLINLRHLDIRGAKLLKEMPFGMK 282 (703)
Q Consensus 223 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~ 282 (703)
+|.++.+|..++++++|++|+|++|. +.. +|..++ ++++|++|++++|.....+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 45666788888899999999999874 555 888888 899999999998887788888888
Q ss_pred CCCCCcccCeeEee-cCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchh
Q 046587 283 ELKNLQTLSNFIVG-KGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVV 361 (703)
Q Consensus 283 ~l~~L~~L~~~~~~-~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 361 (703)
++++|++|++..+. ... ...+..+..+
T Consensus 271 ~l~~L~~L~Ls~n~~l~~------------------------------~~lp~~~~~L---------------------- 298 (636)
T 4eco_A 271 ALPEMQLINVACNRGISG------------------------------EQLKDDWQAL---------------------- 298 (636)
T ss_dssp TCSSCCEEECTTCTTSCH------------------------------HHHHHHHHHH----------------------
T ss_pred cCCCCCEEECcCCCCCcc------------------------------ccchHHHHhh----------------------
Confidence 88888888754332 110 0111111111
Q ss_pred hHhhhhcCCCCCCcceEEEeccCCCCCCc--ccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecccccceeecc
Q 046587 362 EEHVLEILQPHKCIKKVAIRNYGGARFPH--WIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIES 439 (703)
Q Consensus 362 ~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~ 439 (703)
..+..+++|+.|+++++....+|. ++.. +++|+.|++++|...+.+|.++.+++|++|++++|. ++.++.
T Consensus 299 -----~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~ 370 (636)
T 4eco_A 299 -----ADAPVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPA 370 (636)
T ss_dssp -----HHSGGGGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCT
T ss_pred -----hccccCCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccH
Confidence 011223456666666666666776 6665 677777777777766566666777777777777764 334444
Q ss_pred cccCCCcccCCCc-cceeceeeccCCCcccCCCC-CCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCC-Cc
Q 046587 440 EVYGEGFSMPFPS-LEILKPSIAECPKLSGQLPE-LLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPA-SL 516 (703)
Q Consensus 440 ~~~~~~~~~~f~~-L~~L~l~~~~~~~l~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~-~L 516 (703)
.+.. +++ |+.|+++-+.+..+...+.. .+++|+.|++++|.-- ......+++ ..
T Consensus 371 ~l~~------l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~p~~l~~~~~ 427 (636)
T 4eco_A 371 NFCG------FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-----------------SVDGKNFDPLDP 427 (636)
T ss_dssp TSEE------ECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-----------------TTTTCSSCTTCS
T ss_pred hhhh------hcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-----------------Ccchhhhccccc
Confidence 3333 566 77766665555443322211 2447888888887621 111111110 00
Q ss_pred cEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCcccccccccc--------CCccEEEeecCcCc
Q 046587 517 KRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFL--------EALEFLEIRDCPEL 588 (703)
Q Consensus 517 ~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~--------~~L~~L~l~~c~~l 588 (703)
....+.+|+.++++.|.+...... .+..+++|++|++++|... .+|...... ++|++|++++|. +
T Consensus 428 ---~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l 500 (636)
T 4eco_A 428 ---TPFKGINVSSINLSNNQISKFPKE--LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-L 500 (636)
T ss_dssp ---SCCCCCCEEEEECCSSCCCSCCTH--HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-C
T ss_pred ---ccccCCCCCEEECcCCccCcCCHH--HHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-C
Confidence 000233455555555554422211 2233566888888888544 666543221 278888888884 4
Q ss_pred ccccccCC--CCCCCcEEEecCCCCCCccCCC-CCCCCccEEEec------cCCCCcccccccCCCCCcceEeeccCCCc
Q 046587 589 ESILDGLP--NLKCLQSIYIWKCPSLVSFPER-GLPNTISRVGIG------ECDKLEALPNDLHKINSLRYLSIQLCRNL 659 (703)
Q Consensus 589 ~~~p~~~~--~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~------~c~~l~~lp~~~~~l~~L~~L~l~~c~~l 659 (703)
+.+|..+. .+++|++|++++|... .+|.. ..+++|+.|+++ +|.....+|..+..+++|++|++++| .+
T Consensus 501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l 578 (636)
T 4eco_A 501 TKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DI 578 (636)
T ss_dssp CBCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CC
T ss_pred CccChhhhhccCCCcCEEECCCCCCC-CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cC
Confidence 47888776 8888888888888544 36542 336788888884 45556678888888999999999999 66
Q ss_pred ccCCCCCCCCCcCeEEEecCCCCc
Q 046587 660 VSFPEEGFPTSLTSLRIGDFKMYK 683 (703)
Q Consensus 660 ~~l~~~~~~~~L~~L~i~~c~~l~ 683 (703)
+.+|.. +.++|+.|++++|+...
T Consensus 579 ~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 579 RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred CccCHh-HhCcCCEEECcCCCCcc
Confidence 888865 44889999999987543
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-31 Score=305.36 Aligned_cols=477 Identities=18% Similarity=0.127 Sum_probs=318.3
Q ss_pred CCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCC-CCcc-CccccCCCcCceEeccCCCCccc-ccccccc
Q 046587 160 EIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYC-IGEL-PMSFEDLRLLRLLNLADTDIRSL-PESTCTL 236 (703)
Q Consensus 160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L 236 (703)
-.++++.|.+.++. ...+.+..|.++++|++|+|++|. +..+ |..|+++++|++|+|++|.++.+ |..++++
T Consensus 22 lp~~l~~LdLs~N~-----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCC-----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCc-----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 34789999998775 344556778999999999999995 5667 77899999999999999999966 7889999
Q ss_pred ccCcEEecCCCCCCcccCcc--ccCCCcccEEeecCccccccCC-ccCCCCCCCcccCeeEeecCCC-CCChhhh--hhh
Q 046587 237 LNLEILILRNCSRLIKLPPK--MRNLINLRHLDIRGAKLLKEMP-FGMKELKNLQTLSNFIVGKGET-ASGLEDL--KCL 310 (703)
Q Consensus 237 ~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~-~~~~~~L--~~L 310 (703)
++|++|+|++|.....+|.. ++++++|++|++++|......+ ..++++++|++|++..+..... +..+..+ +.|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 99999999998544446654 8999999999999997655433 4689999999999877654332 2334444 233
Q ss_pred hccCCceEEeCccccCChhchhhhhccccc------ccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccC
Q 046587 311 NFLCDELCMSGLENVNNPQNAREATVCEKH------NLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYG 384 (703)
Q Consensus 311 ~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 384 (703)
+.+ .+.... .....+..+..+. .|+.|+++.+.-... ... .+........+..+.+..+.
T Consensus 177 ~~L----~L~~n~----l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~-~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 177 SFF----SLAANS----LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD-----ITG-NFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCC----EECCSB----SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT-----TTS-GGGGTSCSCCBSEEECCSSC
T ss_pred ceE----ECCCCc----cccccccchhhcCCccccCceeEEecCCCcCchh-----HHH-HHHhhcCcccccceeccccc
Confidence 322 222111 1111111222222 377777765431111 111 11112223456666665321
Q ss_pred CCC------C----CcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeecccccCCCcccCCCcc
Q 046587 385 GAR------F----PHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 453 (703)
Q Consensus 385 ~~~------~----p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L 453 (703)
... + +..+.....++|+.|++++|......+ .++.+++|+.|++++|..-...+..+. .+++|
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~------~l~~L 316 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY------GLDNL 316 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT------TCSSC
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc------CCCCC
Confidence 110 0 111222124789999999998866655 588899999999998875444443343 37899
Q ss_pred ceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCccccccccc
Q 046587 454 EILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDD 533 (703)
Q Consensus 454 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 533 (703)
+.|+++.+.+..+.......+++|+.|++++|. +..++... +.++++|+.+.++
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-----------------i~~~~~~~---------~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-----------------IAIIQDQT---------FKFLEKLQTLDLR 370 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-----------------CCCCCSSC---------SCSCCCCCEEEEE
T ss_pred CEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-----------------CCccChhh---------hcCCCCCCEEECC
Confidence 998887776665543344568899999999985 22222211 1223344444444
Q ss_pred ccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCccccc--ccCCCCCCCcEEEecCCCC
Q 046587 534 EEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESIL--DGLPNLKCLQSIYIWKCPS 611 (703)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p--~~~~~l~~L~~L~l~~c~~ 611 (703)
+|.+. .++.+++|+.|++++|.. ..+|.. ..+++.|++++|. +..++ ..+.++++|+.|++++|..
T Consensus 371 ~N~l~-------~i~~~~~L~~L~l~~N~l-~~l~~~---~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 371 DNALT-------TIHFIPSIPDIFLSGNKL-VTLPKI---NLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp TCCSC-------CCSSCCSCSEEEEESCCC-CCCCCC---CTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred CCCCC-------cccCCCCcchhccCCCCc-cccccc---ccccceeecccCc-cccCchhhhhhcCCccceeeCCCCcc
Confidence 44333 333466699999999854 466654 4579999999984 44443 2356899999999999954
Q ss_pred CCccCC--CCCCCCccEEEeccCCCC-----cccccccCCCCCcceEeeccCCCcccCCCCCC--CCCcCeEEEecCCCC
Q 046587 612 LVSFPE--RGLPNTISRVGIGECDKL-----EALPNDLHKINSLRYLSIQLCRNLVSFPEEGF--PTSLTSLRIGDFKMY 682 (703)
Q Consensus 612 l~~~~~--~~~~~~L~~L~l~~c~~l-----~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l 682 (703)
....+. ...+++|+.|++++|..- ...|..+.++++|+.|++++| .++.++...+ +++|++|++++| .+
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l 516 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RL 516 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CC
T ss_pred cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCC-CC
Confidence 332222 123688999999996533 223456788999999999999 8888887643 789999999998 56
Q ss_pred ccccccCcCCCCceeeEEecC
Q 046587 683 KTLVQWGLHRLTSLGRLYIVD 703 (703)
Q Consensus 683 ~~~~~~~l~~l~~L~~L~l~~ 703 (703)
+.++...+. ++|+.|++++
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~ 535 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISR 535 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEE
T ss_pred CccChhhhh--ccccEEECCC
Confidence 667665455 8999999873
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=3.4e-32 Score=306.49 Aligned_cols=363 Identities=15% Similarity=0.121 Sum_probs=186.7
Q ss_pred CCCccccccccccccCcEEecCCCCCCcc------------------cCcccc--CCCcccEEeecCccccccCCccCCC
Q 046587 224 TDIRSLPESTCTLLNLEILILRNCSRLIK------------------LPPKMR--NLINLRHLDIRGAKLLKEMPFGMKE 283 (703)
Q Consensus 224 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~ 283 (703)
|.++.+|..++++++|++|+|++|. +.. +|..++ ++++|++|++++|.....+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 3444588888899999999999874 555 888877 8999999999988878888888888
Q ss_pred CCCCcccCeeEee-cCC--CCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCch
Q 046587 284 LKNLQTLSNFIVG-KGE--TASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGV 360 (703)
Q Consensus 284 l~~L~~L~~~~~~-~~~--~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 360 (703)
+++|++|++..+. ... .|..+..+. ..+..+++|+.|+++.+.-.
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-------------------------~~~~~l~~L~~L~Ls~N~L~------- 561 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLA-------------------------DDEDTGPKIQIFYMGYNNLE------- 561 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHH-------------------------HCTTTTTTCCEEECCSSCCC-------
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhh-------------------------hcccccCCccEEEeeCCcCC-------
Confidence 8888888764432 110 101111110 01122234444444332200
Q ss_pred hhHhhhh--cCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCc-cceeeeccccccee
Q 046587 361 VEEHVLE--ILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSS-LKHLAVKGLKKLKS 436 (703)
Q Consensus 361 ~~~~~~~--~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~-L~~L~l~~~~~l~~ 436 (703)
.+.. .+..+++|+.|++++|....+| .+.. +++|+.|++++|... .+| .+..+++ |+.|++++|. ++.
T Consensus 562 ---~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~--L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~ 633 (876)
T 4ecn_A 562 ---EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGT--NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKY 633 (876)
T ss_dssp ---BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCT--TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCS
T ss_pred ---ccCChhhhhcCCCCCEEECCCCCcccch-hhcC--CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCc
Confidence 0111 2334445555555555444444 3332 455555555555443 233 3444554 5555555443 222
Q ss_pred ecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCc
Q 046587 437 IESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASL 516 (703)
Q Consensus 437 ~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L 516 (703)
++..+.. . ..++|+.|++++|.--.. + + .++..+
T Consensus 634 lp~~~~~------~----------------------~~~~L~~L~Ls~N~l~g~-------------i---p--~l~~~l 667 (876)
T 4ecn_A 634 IPNIFNA------K----------------------SVYVMGSVDFSYNKIGSE-------------G---R--NISCSM 667 (876)
T ss_dssp CCSCCCT------T----------------------CSSCEEEEECCSSCTTTT-------------S---S--SCSSCT
T ss_pred Cchhhhc------c----------------------ccCCCCEEECcCCcCCCc-------------c---c--cchhhh
Confidence 2211111 0 122355555555541100 0 0 000000
Q ss_pred cEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccc--------cCCccEEEeecCcCc
Q 046587 517 KRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQF--------LEALEFLEIRDCPEL 588 (703)
Q Consensus 517 ~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~--------~~~L~~L~l~~c~~l 588 (703)
. ...+.+|+.|+++.|.+...... .+..+++|+.|++++|. +..+|..... +++|+.|+|++| .+
T Consensus 668 ~---~~~~~~L~~L~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L 740 (876)
T 4ecn_A 668 D---DYKGINASTVTLSYNEIQKFPTE--LFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KL 740 (876)
T ss_dssp T---TCCCCCEEEEECCSSCCCSCCHH--HHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CC
T ss_pred c---cccCCCcCEEEccCCcCCccCHH--HHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CC
Confidence 0 00111233333333332211100 11133446666666663 3345443322 125666666666 33
Q ss_pred ccccccCC--CCCCCcEEEecCCCCCCccCC-CCCCCCccEEEecc------CCCCcccccccCCCCCcceEeeccCCCc
Q 046587 589 ESILDGLP--NLKCLQSIYIWKCPSLVSFPE-RGLPNTISRVGIGE------CDKLEALPNDLHKINSLRYLSIQLCRNL 659 (703)
Q Consensus 589 ~~~p~~~~--~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~c~~l 659 (703)
..+|..+. .+++|+.|++++|. +..+|. ...+++|+.|++++ |.....+|..+.++++|+.|++++| .+
T Consensus 741 ~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L 818 (876)
T 4ecn_A 741 TSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DI 818 (876)
T ss_dssp CCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CC
T ss_pred ccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CC
Confidence 35666655 66666666666663 333443 22355666666654 4445667777777888888888888 55
Q ss_pred ccCCCCCCCCCcCeEEEecCCCCc
Q 046587 660 VSFPEEGFPTSLTSLRIGDFKMYK 683 (703)
Q Consensus 660 ~~l~~~~~~~~L~~L~i~~c~~l~ 683 (703)
+.+|.. +.++|+.|++++|+...
T Consensus 819 ~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 819 RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CccCHh-hcCCCCEEECCCCCCCc
Confidence 777765 44678888888876543
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=5.4e-31 Score=287.29 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=98.2
Q ss_pred CcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCc--cccccccccCCccEEEeecCcCccccccc-CCCCCC
Q 046587 524 CEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELT--SLSSGVQFLEALEFLEIRDCPELESILDG-LPNLKC 600 (703)
Q Consensus 524 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~~p~~-~~~l~~ 600 (703)
+++|+.++++.|.+....+. .+..+++|++|++++|.... .+|..+..+++|++|++++|.....+|.. +..+++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred CCcccEEEeECCccChhhhh--hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 44455555555554443322 55666677777777775443 44455556777777777777554446654 666777
Q ss_pred CcEEEecCCCCCCccCCCCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCC--CCCCcCeEEEec
Q 046587 601 LQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEG--FPTSLTSLRIGD 678 (703)
Q Consensus 601 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~ 678 (703)
|++|++++|.....+|. .++++|+.|++++| .++.+|..+..+++|++|++++| .++.+|... .+++|++|++++
T Consensus 401 L~~L~Ls~N~l~~~~~~-~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFR-CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGG-SCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhh-hhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcC
Confidence 77777777754444443 23367777777775 45677776667777777777777 667777652 256777777777
Q ss_pred CCCCc
Q 046587 679 FKMYK 683 (703)
Q Consensus 679 c~~l~ 683 (703)
|+...
T Consensus 478 N~~~c 482 (520)
T 2z7x_B 478 NPWDC 482 (520)
T ss_dssp SCBCC
T ss_pred CCCcc
Confidence 76443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.7e-31 Score=288.57 Aligned_cols=433 Identities=15% Similarity=0.137 Sum_probs=244.8
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCcc-CccccCCCcCceEeccCCCCccccccccccccCc
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLE 240 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 240 (703)
++++.|.+.++. .....+..|..+++|++|++++|.++.+ |..|+++++|++|+|++|.++.+|.. .+++|+
T Consensus 21 ~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNY-----ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSC-----CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEEECCCCc-----ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 688888887765 2344556788889999999999998777 67888999999999999999888877 889999
Q ss_pred EEecCCCCCCc-ccCccccCCCcccEEeecCccccccCCccCCCCCCC--cccCeeEeec---CCCCCChhhhhhhhccC
Q 046587 241 ILILRNCSRLI-KLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNL--QTLSNFIVGK---GETASGLEDLKCLNFLC 314 (703)
Q Consensus 241 ~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~~~~~~~---~~~~~~~~~L~~L~~L~ 314 (703)
+|++++|.... .+|..++++++|++|++++|.... ..++.+++| ++|++..+.. ...+..+..+.. +
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~--- 166 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-E--- 166 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-E---
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc-c---
Confidence 99999984333 367788999999999999886433 346667777 8887766654 112222322221 1
Q ss_pred CceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCC-----CC
Q 046587 315 DELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGAR-----FP 389 (703)
Q Consensus 315 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p 389 (703)
.+.+ .+.............+..+++|+.++++++..... ..........+..++.|+.|++.++.... ++
T Consensus 167 -~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 167 -SLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK---CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp -EEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT---THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred -eEEE-EeccCcchhhhhhhhhhcccceeeccccccccccc---cceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 1111 01111111122223344566666666655421000 00111122234444455555554432211 11
Q ss_pred cccCCCCCCCccEEEEeccCCCCcCC-CC-----CCcCccceeeecccccceeecc-cccCCCcccCCCccceeceeecc
Q 046587 390 HWIGDPSFSKMKVLKLENCHNCVSLP-SL-----GLLSSLKHLAVKGLKKLKSIES-EVYGEGFSMPFPSLEILKPSIAE 462 (703)
Q Consensus 390 ~~~~~~~~~~L~~L~l~~~~~~~~l~-~l-----~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~f~~L~~L~l~~~~ 462 (703)
.+.. .++|++|++++|...+.+| .+ +.+++|+.+++.++.. .++. .+.. .|+
T Consensus 242 ~~~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~-----~~~----------- 300 (520)
T 2z7x_B 242 QLVW---HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYE-----IFS----------- 300 (520)
T ss_dssp HHHH---TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHH-----HHH-----------
T ss_pred HHhh---hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhc-----ccc-----------
Confidence 1110 2344445554444433333 12 3344444444433321 1110 0000 000
Q ss_pred CCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCC
Q 046587 463 CPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSP 542 (703)
Q Consensus 463 ~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~ 542 (703)
..+|+.|+++++. +..+ .
T Consensus 301 --------------------------------------------------~~~L~~L~l~~n~-l~~~----------~- 318 (520)
T 2z7x_B 301 --------------------------------------------------NMNIKNFTVSGTR-MVHM----------L- 318 (520)
T ss_dssp --------------------------------------------------TCCCSEEEEESSC-CCCC----------C-
T ss_pred --------------------------------------------------cCceeEEEcCCCc-cccc----------c-
Confidence 0134444444432 1100 0
Q ss_pred CCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcc--cccccCCCCCCCcEEEecCCCCCCccCCC--
Q 046587 543 SPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELE--SILDGLPNLKCLQSIYIWKCPSLVSFPER-- 618 (703)
Q Consensus 543 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~--~~p~~~~~l~~L~~L~l~~c~~l~~~~~~-- 618 (703)
....+++|++|++++|.....+|..+..+++|++|++++|.... .+|..+..+++|++|++++|.....+|..
T Consensus 319 ---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 319 ---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp ---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred ---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 11344557777777776555566666677777777777775443 44556777777777777777544435532
Q ss_pred CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCCCcCeEEEecCCCCccccccCcCCCCcee
Q 046587 619 GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLG 697 (703)
Q Consensus 619 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~l~~l~~L~ 697 (703)
..+++|+.|++++|.....+|..+. ++|++|++++| .++.+|.. ..+++|++|++++|. ++.++...+.++++|+
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCccc
Confidence 3356777777777665555555443 67777777777 66677654 236677777777763 4566655567777777
Q ss_pred eEEecC
Q 046587 698 RLYIVD 703 (703)
Q Consensus 698 ~L~l~~ 703 (703)
.|++++
T Consensus 472 ~L~l~~ 477 (520)
T 2z7x_B 472 KIWLHT 477 (520)
T ss_dssp EEECCS
T ss_pred EEECcC
Confidence 777753
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.5e-32 Score=301.15 Aligned_cols=381 Identities=14% Similarity=0.131 Sum_probs=206.4
Q ss_pred CCccCccccCCCcCceEeccCCCCcc------------------cccccc--ccccCcEEecCCCCCCcccCccccCCCc
Q 046587 203 IGELPMSFEDLRLLRLLNLADTDIRS------------------LPESTC--TLLNLEILILRNCSRLIKLPPKMRNLIN 262 (703)
Q Consensus 203 l~~lp~~i~~l~~L~~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 262 (703)
++.+|..++++++|++|+|++|.++. +|..++ ++++|++|++++|.....+|..++++++
T Consensus 195 l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 43456666666666666666666665 666666 6666666666666555566666666666
Q ss_pred ccEEeecCcc-ccc-cCCccCCCC------CCCcccCeeEeecCCCCC--ChhhhhhhhccCCceEEeCccccCChhchh
Q 046587 263 LRHLDIRGAK-LLK-EMPFGMKEL------KNLQTLSNFIVGKGETAS--GLEDLKCLNFLCDELCMSGLENVNNPQNAR 332 (703)
Q Consensus 263 L~~L~l~~~~-~~~-~~p~~i~~l------~~L~~L~~~~~~~~~~~~--~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~ 332 (703)
|++|++++|. ... .+|..++++ ++|++|++..+.....|. .+..+++|+.+. +. .+...+..
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~----L~----~N~l~g~i 346 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE----CL----YNQLEGKL 346 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEE----CC----SCCCEEEC
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEe----Cc----CCcCccch
Confidence 6666666664 333 455555554 566666554444333322 233333332221 10 01111111
Q ss_pred hhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCC-cceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCC
Q 046587 333 EATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKC-IKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNC 411 (703)
Q Consensus 333 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~ 411 (703)
+ .+..+++|+.|+++++.-. .+...+..+++ |+.|+++++....+|.++....+++|+.|++++|...
T Consensus 347 p-~~~~l~~L~~L~L~~N~l~----------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYNQIT----------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp C-CCEEEEEESEEECCSSEEE----------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred h-hhCCCCCCCEEECCCCccc----------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC
Confidence 2 3444455555555443200 12223344455 6666666666666666555433346666666666655
Q ss_pred CcCC-CCC-------CcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEe
Q 046587 412 VSLP-SLG-------LLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVS 483 (703)
Q Consensus 412 ~~l~-~l~-------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~ 483 (703)
+..| .++ .+++|++|++++|. +..+...+...+++|+.|+++
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~------------------------------l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQ------------------------------ISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSC------------------------------CCSCCTHHHHTTCCCSEEECC
T ss_pred CcchhhhcccccccccCCCCCEEECcCCc------------------------------cCcCCHHHHccCCCCCEEECC
Confidence 5444 233 44556666665543 222111111247889999998
Q ss_pred cCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCC
Q 046587 484 KCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPE 563 (703)
Q Consensus 484 ~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 563 (703)
+|. +..++...+. ... ..+..+++|++|++++|..
T Consensus 466 ~N~-----------------l~~i~~~~~~---------~~~-------------------~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 466 GNM-----------------LTEIPKNSLK---------DEN-------------------ENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SSC-----------------CSBCCSSSSE---------ETT-------------------EECTTGGGCCEEECCSSCC
T ss_pred CCC-----------------CCCcCHHHhc---------ccc-------------------ccccccCCccEEECcCCcC
Confidence 886 2222211110 000 0122333577777777743
Q ss_pred Ccccccccc--ccCCccEEEeecCcCcccccccCCCCCCCcEEEecC------CCCCCccCCC-CCCCCccEEEeccCCC
Q 046587 564 LTSLSSGVQ--FLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWK------CPSLVSFPER-GLPNTISRVGIGECDK 634 (703)
Q Consensus 564 l~~l~~~~~--~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~------c~~l~~~~~~-~~~~~L~~L~l~~c~~ 634 (703)
..+|..+. .+++|++|++++|... .+|..+.++++|+.|++++ |.....+|.. ..+++|+.|++++|.
T Consensus 501 -~~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~- 577 (636)
T 4eco_A 501 -TKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND- 577 (636)
T ss_dssp -CBCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-
T ss_pred -CccChhhhhccCCCcCEEECCCCCCC-CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-
Confidence 36776664 6777888888877444 4777777788888888854 3334445532 236778888888765
Q ss_pred CcccccccCCCCCcceEeeccCCCcccCCCCCC----------CCCcCeEEEecCCCCc
Q 046587 635 LEALPNDLHKINSLRYLSIQLCRNLVSFPEEGF----------PTSLTSLRIGDFKMYK 683 (703)
Q Consensus 635 l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~----------~~~L~~L~i~~c~~l~ 683 (703)
++.+|..+. ++|+.|++++| .+..+...++ +...+..++.+|+.++
T Consensus 578 l~~ip~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L~ 633 (636)
T 4eco_A 578 IRKVNEKIT--PNISVLDIKDN-PNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALD 633 (636)
T ss_dssp CCBCCSCCC--TTCCEEECCSC-TTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred CCccCHhHh--CcCCEEECcCC-CCccccHHhcchhhhcccceeecCCccccCCCcccc
Confidence 477877654 78888888888 4444433222 1233556778887654
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.3e-32 Score=297.58 Aligned_cols=466 Identities=16% Similarity=0.153 Sum_probs=299.8
Q ss_pred CCceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCcc-ccCCC
Q 046587 136 FERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMS-FEDLR 214 (703)
Q Consensus 136 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~l~ 214 (703)
...++.+.+..+..... ....+..+++|+.|.+.++. .....++.|..+++|++|++++|.+..+|.. |++++
T Consensus 25 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSR-----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCC-----cCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 45788888877654322 23467889999999998875 3345567789999999999999999888765 99999
Q ss_pred cCceEeccCCCCcc--ccccccccccCcEEecCCCCCCcccC-ccccCCCcccEEeecCccccccCCccCCCCCCCcccC
Q 046587 215 LLRLLNLADTDIRS--LPESTCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLS 291 (703)
Q Consensus 215 ~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 291 (703)
+|++|++++|.++. .|..++++++|++|++++|..+..+| ..++++++|++|++++|......|..++.+++|++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 99999999999984 56789999999999999987677787 4699999999999999987777888899999999988
Q ss_pred eeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCC
Q 046587 292 NFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQP 371 (703)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 371 (703)
+..+.....+ ...+..+++|+.|+++.+.-..... ........
T Consensus 179 l~~n~~~~~~-------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~~~ 221 (549)
T 2z81_A 179 LHLSESAFLL-------------------------------EIFADILSSVRYLELRDTNLARFQF------SPLPVDEV 221 (549)
T ss_dssp EECSBSTTHH-------------------------------HHHHHSTTTBSEEEEESCBCTTCCC------CCCSSCCC
T ss_pred cccCcccccc-------------------------------hhhHhhcccccEEEccCCccccccc------cccchhhh
Confidence 6544322110 1112234555666665443110000 00011223
Q ss_pred CCCcceEEEeccCCCC-----CCcccCCCCCCCccEEEEeccCCCCc-------CCCCCCcCccceeeecccccceeecc
Q 046587 372 HKCIKKVAIRNYGGAR-----FPHWIGDPSFSKMKVLKLENCHNCVS-------LPSLGLLSSLKHLAVKGLKKLKSIES 439 (703)
Q Consensus 372 ~~~L~~L~l~~~~~~~-----~p~~~~~~~~~~L~~L~l~~~~~~~~-------l~~l~~l~~L~~L~l~~~~~l~~~~~ 439 (703)
.+.|+.|++.++.... ++..+.. +++|+.+++++|...+. ...+..+++|+.|.+.++.......
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~--~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~- 298 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRY--ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL- 298 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGG--CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG-
T ss_pred hhcccceeccccccchhHHHHHHHHhhh--hccccccccccccccccccccccchhhhhhhcccccccccccccchhhh-
Confidence 4566666666654321 1222222 56677777776654221 1134556677777776654211100
Q ss_pred cccC-CCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccc----cCCCC
Q 046587 440 EVYG-EGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIAR----RRLPA 514 (703)
Q Consensus 440 ~~~~-~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~----~~~~~ 514 (703)
+.. ......+++|+.|.+.-+....+...+...+++|+.|++++|.-.. .++. -...+
T Consensus 299 -~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~----------------~~~~~~~~~~~l~ 361 (549)
T 2z81_A 299 -FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE----------------EYLKNSACKGAWP 361 (549)
T ss_dssp -SCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCH----------------HHHHHHTCTTSST
T ss_pred -cccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccc----------------ccccchhhhhccc
Confidence 000 0001124566666555444332221111247888888888886211 0110 01112
Q ss_pred CccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCccccccc
Q 046587 515 SLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDG 594 (703)
Q Consensus 515 ~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~ 594 (703)
+|+.|+++++ .+.........+..+++|++|++++| .++.+|..+..+++|++|++++|. ++.+|..
T Consensus 362 ~L~~L~Ls~N-----------~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~ 428 (549)
T 2z81_A 362 SLQTLVLSQN-----------HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTC 428 (549)
T ss_dssp TCCEEECTTS-----------CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTT
T ss_pred cCcEEEccCC-----------cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccch
Confidence 5555555544 22211100012445666999999988 455788877788889999999885 5566655
Q ss_pred CCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCC--CCCCcC
Q 046587 595 LPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEG--FPTSLT 672 (703)
Q Consensus 595 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~ 672 (703)
+. ++|++|++++| .+..++ ..+++|+.|++++| .++.+|. ...+++|++|++++| .++.+++.. .+++|+
T Consensus 429 ~~--~~L~~L~Ls~N-~l~~~~--~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 429 IP--QTLEVLDVSNN-NLDSFS--LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp SC--TTCSEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCC
T ss_pred hc--CCceEEECCCC-Chhhhc--ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccC
Confidence 43 68999999988 454444 35678999999986 5678886 457889999999998 777777653 368899
Q ss_pred eEEEecCCCCccc
Q 046587 673 SLRIGDFKMYKTL 685 (703)
Q Consensus 673 ~L~i~~c~~l~~~ 685 (703)
.|++++|+.....
T Consensus 501 ~L~l~~N~~~~~~ 513 (549)
T 2z81_A 501 KIWLHTNPWDCSC 513 (549)
T ss_dssp EEECCSSCBCCCH
T ss_pred EEEecCCCccCCC
Confidence 9999998865433
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.6e-30 Score=293.02 Aligned_cols=363 Identities=15% Similarity=0.109 Sum_probs=229.9
Q ss_pred CCCCccCccccCCCcCceEeccCCCCcc------------------cccccc--ccccCcEEecCCCCCCcccCccccCC
Q 046587 201 YCIGELPMSFEDLRLLRLLNLADTDIRS------------------LPESTC--TLLNLEILILRNCSRLIKLPPKMRNL 260 (703)
Q Consensus 201 ~~l~~lp~~i~~l~~L~~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L 260 (703)
|.+..+|..|+++++|++|+|++|.++. +|..++ ++++|++|+|++|.....+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3344478888888888888888888887 888877 88888888888887777888888888
Q ss_pred CcccEEeecCcc-ccc-cCCccCCCCC-------CCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhch
Q 046587 261 INLRHLDIRGAK-LLK-EMPFGMKELK-------NLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNA 331 (703)
Q Consensus 261 ~~L~~L~l~~~~-~~~-~~p~~i~~l~-------~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~ 331 (703)
++|++|++++|. ... .+|..+++++ +|++|++..+.....|.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~----------------------------- 565 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA----------------------------- 565 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-----------------------------
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-----------------------------
Confidence 888888888886 444 5776666555 77777765544332221
Q ss_pred hhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCC-ccEEEEeccCC
Q 046587 332 REATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSK-MKVLKLENCHN 410 (703)
Q Consensus 332 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~-L~~L~l~~~~~ 410 (703)
...+..+++|+.|+++.+... .+. .+..+++|+.|++++|....+|.++.. +++ |+.|++++|..
T Consensus 566 -~~~l~~L~~L~~L~Ls~N~l~----------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~--l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 566 -SASLQKMVKLGLLDCVHNKVR----------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCA--FTDQVEGLGFSHNKL 631 (876)
T ss_dssp -HHHHTTCTTCCEEECTTSCCC----------BCC-CCCTTSEESEEECCSSCCSCCCTTSCE--ECTTCCEEECCSSCC
T ss_pred -hhhhhcCCCCCEEECCCCCcc----------cch-hhcCCCcceEEECcCCccccchHHHhh--ccccCCEEECcCCCC
Confidence 002334445555555443200 111 455677788888888887788877765 777 88888888876
Q ss_pred CCcCC-CCCCcC--ccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCC
Q 046587 411 CVSLP-SLGLLS--SLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKK 487 (703)
Q Consensus 411 ~~~l~-~l~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 487 (703)
. .+| .+..++ +|+.|++++|.....++. +... ...-..++|+.|++++|.
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-l~~~------------------------l~~~~~~~L~~L~Ls~N~- 684 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-ISCS------------------------MDDYKGINASTVTLSYNE- 684 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-CSSC------------------------TTTCCCCCEEEEECCSSC-
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCcccc-chhh------------------------hccccCCCcCEEEccCCc-
Confidence 5 455 444443 488888887763322110 0000 000013456666666654
Q ss_pred ccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCC-----CCCCcccccEEEEecCC
Q 046587 488 LFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPA-----SSSSPVMLQHLSIENCP 562 (703)
Q Consensus 488 l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~ 562 (703)
+..+|... +.++++|+.|+++.|.+........ ..+++++|++|++++|.
T Consensus 685 ----------------L~~lp~~~---------~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 685 ----------------IQKFPTEL---------FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp ----------------CCSCCHHH---------HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred ----------------CCccCHHH---------HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC
Confidence 12222110 0112223333333332221111100 12334479999999884
Q ss_pred CCcccccccc--ccCCccEEEeecCcCcccccccCCCCCCCcEEEecC------CCCCCccCCC-CCCCCccEEEeccCC
Q 046587 563 ELTSLSSGVQ--FLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWK------CPSLVSFPER-GLPNTISRVGIGECD 633 (703)
Q Consensus 563 ~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~------c~~l~~~~~~-~~~~~L~~L~l~~c~ 633 (703)
+..+|..+. .+++|+.|+|++|.. ..+|..+.++++|+.|++++ |.....+|.. ..+++|+.|++++|.
T Consensus 740 -L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 740 -LTSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp -CCCCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred -CccchHHhhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 457887775 788899999998854 45888888999999999977 4334455532 237789999999976
Q ss_pred CCcccccccCCCCCcceEeeccCCCcccCCC
Q 046587 634 KLEALPNDLHKINSLRYLSIQLCRNLVSFPE 664 (703)
Q Consensus 634 ~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~ 664 (703)
. +.+|..+. ++|+.|+|++|+ +..+..
T Consensus 818 L-~~Ip~~l~--~~L~~LdLs~N~-l~~i~~ 844 (876)
T 4ecn_A 818 I-RKVDEKLT--PQLYILDIADNP-NISIDV 844 (876)
T ss_dssp C-CBCCSCCC--SSSCEEECCSCT-TCEEEC
T ss_pred C-CccCHhhc--CCCCEEECCCCC-CCccCh
Confidence 4 88988764 699999999994 555443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=5.2e-29 Score=273.82 Aligned_cols=436 Identities=15% Similarity=0.092 Sum_probs=270.2
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCcc-CccccCCCcCceEeccCCCCccccccccccccCc
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLE 240 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~ 240 (703)
++++.|.+.++. .....+..|..+++|++|++++|.++.+ |..|+++++|++|++++|.++.+|.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~-----i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNS-----ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp TTCCEEECCSSC-----CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCcCEEECCCCC-----ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 678888887765 3344556788888999999999988877 66788889999999999988888877 788999
Q ss_pred EEecCCCCCCccc--CccccCCCcccEEeecCccccccCCccCCCCCCC--cccCeeEeec--CC-CCCChhhhhhhhcc
Q 046587 241 ILILRNCSRLIKL--PPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNL--QTLSNFIVGK--GE-TASGLEDLKCLNFL 313 (703)
Q Consensus 241 ~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~~~~~~~--~~-~~~~~~~L~~L~~L 313 (703)
+|++++| .+..+ |..++++++|++|++++|.... ..++.+++| ++|++..+.. .. .+..+..+.. +.+
T Consensus 125 ~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l 199 (562)
T 3a79_B 125 HLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-TVL 199 (562)
T ss_dssp EEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-EEE
T ss_pred EEECCCC-CccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCc-ceE
Confidence 9999987 45554 4678889999999998886433 234555555 7777666543 11 1122222211 111
Q ss_pred CCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCC-----CC
Q 046587 314 CDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGA-----RF 388 (703)
Q Consensus 314 ~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~ 388 (703)
.+.+ .............+..+.+|+.++++++.. ....-......+...+.++.+.+.++... .+
T Consensus 200 --~l~l---~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~-----~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 269 (562)
T 3a79_B 200 --HLVF---HPNSLFSVQVNMSVNALGHLQLSNIKLNDE-----NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269 (562)
T ss_dssp --EEEE---CSSSCCCCCCEEEESSEEEEEEEEEECCST-----THHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred --EEEe---cCccchhhhhhhcccccceEEEeccccccc-----ccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence 1111 111111112223344566777777765420 00111222334455566666666654322 12
Q ss_pred CcccCCCCCCCccEEEEeccCCCCcCCC-C-----CCcCccceeeecccccceeecccccCCCcccCCCccceeceeecc
Q 046587 389 PHWIGDPSFSKMKVLKLENCHNCVSLPS-L-----GLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAE 462 (703)
Q Consensus 389 p~~~~~~~~~~L~~L~l~~~~~~~~l~~-l-----~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 462 (703)
+.+.. .++|++|++++|...+.+|. + +.++.|+.+++..+.. .++...
T Consensus 270 ~~~~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~--------------------- 323 (562)
T 3a79_B 270 FQFFW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEA--------------------- 323 (562)
T ss_dssp HHHHT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHH---------------------
T ss_pred HHhhh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhh---------------------
Confidence 22222 24677777777766555542 2 3333333333332221 000000
Q ss_pred CCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCC
Q 046587 463 CPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSP 542 (703)
Q Consensus 463 ~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~ 542 (703)
+...+ .-++|+.|++++|.-. .+.. ...+++|+.+++++|.+....+
T Consensus 324 ---~~~~~--~~~~L~~L~l~~n~~~-----------------~~~~-----------~~~l~~L~~L~l~~n~l~~~~~ 370 (562)
T 3a79_B 324 ---LYSVF--AEMNIKMLSISDTPFI-----------------HMVC-----------PPSPSSFTFLNFTQNVFTDSVF 370 (562)
T ss_dssp ---HHHHH--HTCCCSEEEEESSCCC-----------------CCCC-----------CSSCCCCCEEECCSSCCCTTTT
T ss_pred ---hhhhh--ccCcceEEEccCCCcc-----------------cccC-----------ccCCCCceEEECCCCccccchh
Confidence 00000 0145777777777511 1110 0233444555555554444322
Q ss_pred CCCCCCCcccccEEEEecCCCCc--cccccccccCCccEEEeecCcCccccccc-CCCCCCCcEEEecCCCCCCccCCCC
Q 046587 543 SPASSSSPVMLQHLSIENCPELT--SLSSGVQFLEALEFLEIRDCPELESILDG-LPNLKCLQSIYIWKCPSLVSFPERG 619 (703)
Q Consensus 543 ~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~~p~~-~~~l~~L~~L~l~~c~~l~~~~~~~ 619 (703)
..+..+++|++|++++|.... .+|..+..+++|++|++++|.....+|.. +..+++|++|++++|.....+|. .
T Consensus 371 --~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~ 447 (562)
T 3a79_B 371 --QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-C 447 (562)
T ss_dssp --TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-S
T ss_pred --hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-h
Confidence 256777889999999985443 34455668899999999999766547654 77899999999999965555544 3
Q ss_pred CCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC--CCCCCcCeEEEecCCCCc
Q 046587 620 LPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE--GFPTSLTSLRIGDFKMYK 683 (703)
Q Consensus 620 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l~ 683 (703)
++++|+.|++++| .++.+|.++..+++|++|++++| .++.+|.. ..+++|+.|++++|+...
T Consensus 448 l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 448 LPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred hcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 3478999999996 68899998889999999999999 88899876 347899999999988554
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=4.6e-28 Score=266.24 Aligned_cols=430 Identities=17% Similarity=0.155 Sum_probs=273.8
Q ss_pred CcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccCccccCCCcccEEee
Q 046587 191 RRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDI 268 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 268 (703)
+.|++|++++|.+..+| ..|+++++|++|++++|.++.+ |..++++++|++|++++| .+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 68999999999998886 5889999999999999999877 567899999999999997 57788876 8999999999
Q ss_pred cCccccc-cCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceE
Q 046587 269 RGAKLLK-EMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTL 347 (703)
Q Consensus 269 ~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 347 (703)
++|.... .+|..++++++|++|++..+.... ..+..++. + +|+.|++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~-----------------------------L-~L~~L~L 176 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAH-----------------------------L-HLSCILL 176 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTT-----------------------------S-CEEEEEE
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc--Cchhhhhh-----------------------------c-eeeEEEe
Confidence 9996443 335678889999988876544322 11111111 1 2255555
Q ss_pred EccCCCCCCCCchhhHhhhhcCCCCC-CcceEEEeccCCCC-CCcccCCCCCCCccEEEEeccCC-----CCcCCCCCCc
Q 046587 348 DWGSQFDNSRDGVVEEHVLEILQPHK-CIKKVAIRNYGGAR-FPHWIGDPSFSKMKVLKLENCHN-----CVSLPSLGLL 420 (703)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~~~~-----~~~l~~l~~l 420 (703)
+.+.... ... ....+..+. ..-.+.+.++.... ++..... .+++|+.+++++|.. ...++.+..+
T Consensus 177 ~~n~l~~---~~~----~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 177 DLVSYHI---KGG----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN-ALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp EESSCCC---CSS----SCCEEEECCEEEEEEEECSSSCCCCCCEEEES-SEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred ecccccc---ccc----CcccccccCcceEEEEecCccchhhhhhhccc-ccceEEEecccccccccchHHHHHHHHhcc
Confidence 5443100 000 001111111 01123344443322 2221111 366777777776641 1112234556
Q ss_pred CccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCC-----CCccEEEEecCCCccccceee
Q 046587 421 SSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELL-----PSLETLVVSKCKKLFIRAEWM 495 (703)
Q Consensus 421 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l-----~~L~~L~l~~~~~l~~~~~~~ 495 (703)
++|+.|++.++............ ....++|+.|+++-+.+ .|.+|..+ ++|+.|.+.++..-.
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~---~~~~~~L~~L~l~~n~l---~~~ip~~~~~~~~~~L~~L~~~~~~~~~------ 316 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQ---FFWPRPVEYLNIYNLTI---TERIDREEFTYSETALKSLMIEHVKNQV------ 316 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHH---HHTTSSEEEEEEEEEEE---CSCCCCCCCCCCSCSCCEEEEEEEEECC------
T ss_pred CcceEEEecCCcCcHHHHHHHHH---hhhcccccEEEEeccEe---eccccchhhhcccccchheehhhcccce------
Confidence 67777777654321100000000 01123677766554433 23444433 566666655543110
Q ss_pred EEEcCCCccccccccCC-----CCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCcccccc
Q 046587 496 LYIRDRDCLTFIARRRL-----PASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSG 570 (703)
Q Consensus 496 ~~i~~~~~l~~~~~~~~-----~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 570 (703)
+ .+|...+ ..+|+.|+++++. +.... ....+++|++|++++|.....+|..
T Consensus 317 --------~-~~p~~~~~~~~~~~~L~~L~l~~n~-----------~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 317 --------F-LFSKEALYSVFAEMNIKMLSISDTP-----------FIHMV----CPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp --------C-SSCHHHHHHHHHTCCCSEEEEESSC-----------CCCCC----CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred --------e-ecChhhhhhhhccCcceEEEccCCC-----------ccccc----CccCCCCceEEECCCCccccchhhh
Confidence 0 1110000 0256666666653 21110 1245667999999999877777888
Q ss_pred ccccCCccEEEeecCcCcc--cccccCCCCCCCcEEEecCCCCCCccCCC--CCCCCccEEEeccCCCCcccccccCCCC
Q 046587 571 VQFLEALEFLEIRDCPELE--SILDGLPNLKCLQSIYIWKCPSLVSFPER--GLPNTISRVGIGECDKLEALPNDLHKIN 646 (703)
Q Consensus 571 ~~~~~~L~~L~l~~c~~l~--~~p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~lp~~~~~l~ 646 (703)
+..+++|++|++++|.... .+|..+.++++|++|++++|.....+|.. ..+++|+.|++++|.....+|..+. +
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 8889999999999985443 34567899999999999999655547653 3478999999999876566666543 7
Q ss_pred CcceEeeccCCCcccCCCC-CCCCCcCeEEEecCCCCccccccCcCCCCceeeEEecC
Q 046587 647 SLRYLSIQLCRNLVSFPEE-GFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIVD 703 (703)
Q Consensus 647 ~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~~ 703 (703)
+|++|++++| .++.+|.. ..+++|++|++++|. ++.++...+..+++|+.|++++
T Consensus 451 ~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 451 KVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp TCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCS
T ss_pred cCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecC
Confidence 9999999999 89999876 347899999999975 6678876689999999999874
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=7.3e-28 Score=269.93 Aligned_cols=479 Identities=18% Similarity=0.147 Sum_probs=247.5
Q ss_pred ceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCc-cccCCCcCceEeccCCCCccccc-cccccccCc
Q 046587 163 HLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPM-SFEDLRLLRLLNLADTDIRSLPE-STCTLLNLE 240 (703)
Q Consensus 163 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~ 240 (703)
.++.|.+.++. ...+.+..|.++++|++|+|++|.++.+|+ +|+++++|++|+|++|.++.+|. .|+++++|+
T Consensus 53 ~~~~LdLs~N~-----i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCEEEeeCCC-----CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 56777776664 344555667777788888888887777744 57777888888888887777764 467778888
Q ss_pred EEecCCCCCCcccCc-cccCCCcccEEeecCccccc-cCCccCCCCCCCcccCeeEeecCCC-CCChhhhhhhhccCCce
Q 046587 241 ILILRNCSRLIKLPP-KMRNLINLRHLDIRGAKLLK-EMPFGMKELKNLQTLSNFIVGKGET-ASGLEDLKCLNFLCDEL 317 (703)
Q Consensus 241 ~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~-~~~~~~L~~L~~L~~~l 317 (703)
+|++++| .+..+|. .|+++++|++|++++|.... ..|..++.+++|++|++..+..... +..+..+..+......+
T Consensus 128 ~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 128 KLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp EEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred EEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 8888876 5566654 47778888888887775432 3456677777777777655443321 12233333322211111
Q ss_pred EEeC--c------------------cccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcce
Q 046587 318 CMSG--L------------------ENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKK 377 (703)
Q Consensus 318 ~i~~--~------------------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 377 (703)
.... + .............+..+..++...+........... .......+.....+..
T Consensus 207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l---~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL---EKFDKSALEGLCNLTI 283 (635)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC---SCCCTTTTGGGGGSEE
T ss_pred hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc---ccccccccccccchhh
Confidence 1000 0 000000111122223333333333322110000000 0000011111222222
Q ss_pred EEEeccCCCCC----CcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecccccceeecccccCCCcccCCCcc
Q 046587 378 VAIRNYGGARF----PHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 453 (703)
Q Consensus 378 L~l~~~~~~~~----p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L 453 (703)
..+........ +..+. .+.+++.+.+.++... .++.+....+|+.|++.+|..-... ...++.|
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~---------~~~l~~L 351 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFN--CLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFP---------TLKLKSL 351 (635)
T ss_dssp EEEEEECCCSCEEECTTTTG--GGTTCSEEEEESCEEE-ECGGGGSCCCCSEEEEESCEESSCC---------CCBCTTC
T ss_pred hhhhhhhhcccccchhhhhh--hhcccccccccccccc-cccccccchhhhhhhcccccccCcC---------cccchhh
Confidence 22222211111 11111 1344555555544331 1222333445555555554321110 0123444
Q ss_pred ceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCcccccccc-CCCCCccEEEEe----------
Q 046587 454 EILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARR-RLPASLKRLEIE---------- 522 (703)
Q Consensus 454 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~-~~~~~L~~L~l~---------- 522 (703)
+.+.+..+...... ....+++|+.+++++|..-.. ...+.. ....+|+.+++.
T Consensus 352 ~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~--------------~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 415 (635)
T 4g8a_A 352 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFK--------------GCCSQSDFGTISLKYLDLSFNGVITMSSN 415 (635)
T ss_dssp CEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEE--------------EECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred hhcccccccCCCCc--ccccccccccchhhccccccc--------------cccccchhhhhhhhhhhcccccccccccc
Confidence 44333322222111 112356666666665542110 000000 000122222221
Q ss_pred --cCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCccc-ccccCCCCC
Q 046587 523 --NCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELES-ILDGLPNLK 599 (703)
Q Consensus 523 --~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~-~p~~~~~l~ 599 (703)
.+++|+.+.+..+......+ ...+..+.+++.++++.|......+..+..+++|+.|++++|..... +|..+..++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTS-SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccccccchhhhhcccccccc-ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 23344444444333322221 12456667788888888866555566666778888899888865554 567788888
Q ss_pred CCcEEEecCCCCCCccCCC--CCCCCccEEEeccCCCCccc-ccccCCCCCcceEeeccCCCcccCCCCCC---CCCcCe
Q 046587 600 CLQSIYIWKCPSLVSFPER--GLPNTISRVGIGECDKLEAL-PNDLHKINSLRYLSIQLCRNLVSFPEEGF---PTSLTS 673 (703)
Q Consensus 600 ~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~ 673 (703)
+|++|++++| .+..++.. ..+++|+.|++++| .++.+ |..+.++++|++|++++| ++..+++..+ +++|++
T Consensus 495 ~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 495 NLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCE
T ss_pred ccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCE
Confidence 8999999888 45555433 23678889998885 45555 446788888999999888 7777766533 478888
Q ss_pred EEEecCCCC
Q 046587 674 LRIGDFKMY 682 (703)
Q Consensus 674 L~i~~c~~l 682 (703)
|++++||..
T Consensus 572 L~L~~Np~~ 580 (635)
T 4g8a_A 572 LNLTQNDFA 580 (635)
T ss_dssp EECTTCCBC
T ss_pred EEeeCCCCc
Confidence 888887744
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.6e-28 Score=260.49 Aligned_cols=394 Identities=21% Similarity=0.206 Sum_probs=179.7
Q ss_pred CcccEEecCCCCCCccCccccCCCcCceEeccCCCCc-cccccccccccC-------------cEEecCCCCCCcccCcc
Q 046587 191 RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIR-SLPESTCTLLNL-------------EILILRNCSRLIKLPPK 256 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~lp~~ 256 (703)
.+|++|++++|.++.+|++|+++++|++|++++|.+. .+|.+++++.+| ++|++++| .+..+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC
Confidence 4566666666666666666666666666666666655 566666666553 66666665 45555542
Q ss_pred ccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhc
Q 046587 257 MRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATV 336 (703)
Q Consensus 257 i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l 336 (703)
.++|++|++++|.. ..+|.. +++|++|++..+.....+... +.|+.+ .+.. +.... .+ .+
T Consensus 90 ---~~~L~~L~l~~n~l-~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L----~L~~----n~l~~-lp-~~ 149 (454)
T 1jl5_A 90 ---PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYL----GVSN----NQLEK-LP-EL 149 (454)
T ss_dssp ---CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEE----ECCS----SCCSS-CC-CC
T ss_pred ---cCCCCEEEccCCcC-Cccccc---cCCCcEEECCCCccCcccCCC---CCCCEE----ECcC----CCCCC-Cc-cc
Confidence 35666666666643 335532 245555554433322211100 111111 1111 00111 11 25
Q ss_pred ccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCC
Q 046587 337 CEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPS 416 (703)
Q Consensus 337 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~ 416 (703)
..+++|+.|+++++.-. .. . ....+|+.|+++++....+|. +.. +++|+.|++++|...+ +|.
T Consensus 150 ~~l~~L~~L~l~~N~l~-~l---------p---~~~~~L~~L~L~~n~l~~l~~-~~~--l~~L~~L~l~~N~l~~-l~~ 212 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLK-KL---------P---DLPPSLEFIAAGNNQLEELPE-LQN--LPFLTAIYADNNSLKK-LPD 212 (454)
T ss_dssp TTCTTCCEEECCSSCCS-CC---------C---CCCTTCCEEECCSSCCSSCCC-CTT--CTTCCEEECCSSCCSS-CCC
T ss_pred CCCCCCCEEECCCCcCc-cc---------C---CCcccccEEECcCCcCCcCcc-ccC--CCCCCEEECCCCcCCc-CCC
Confidence 55666777777654311 00 0 112467777777777776663 443 6777777777776543 332
Q ss_pred CCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeE
Q 046587 417 LGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWML 496 (703)
Q Consensus 417 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 496 (703)
. .++|++|++++|. ++.++. + ..+++|+.|+++-+.... +|..+++|+.|++++|.
T Consensus 213 ~--~~~L~~L~l~~n~-l~~lp~-~------~~l~~L~~L~l~~N~l~~----l~~~~~~L~~L~l~~N~---------- 268 (454)
T 1jl5_A 213 L--PLSLESIVAGNNI-LEELPE-L------QNLPFLTTIYADNNLLKT----LPDLPPSLEALNVRDNY---------- 268 (454)
T ss_dssp C--CTTCCEEECCSSC-CSSCCC-C------TTCTTCCEEECCSSCCSS----CCSCCTTCCEEECCSSC----------
T ss_pred C--cCcccEEECcCCc-CCcccc-c------CCCCCCCEEECCCCcCCc----ccccccccCEEECCCCc----------
Confidence 2 2477777777764 334431 2 236677776655444332 34445677777777765
Q ss_pred EEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCC
Q 046587 497 YIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEA 576 (703)
Q Consensus 497 ~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 576 (703)
+..++ ..+++|+.|+++++ .+.+... ++ ++|++|++++|.. ..++. .+++
T Consensus 269 -------l~~l~--~~~~~L~~L~ls~N-----------~l~~l~~----~~--~~L~~L~l~~N~l-~~i~~---~~~~ 318 (454)
T 1jl5_A 269 -------LTDLP--ELPQSLTFLDVSEN-----------IFSGLSE----LP--PNLYYLNASSNEI-RSLCD---LPPS 318 (454)
T ss_dssp -------CSCCC--CCCTTCCEEECCSS-----------CCSEESC----CC--TTCCEEECCSSCC-SEECC---CCTT
T ss_pred -------ccccC--cccCcCCEEECcCC-----------ccCcccC----cC--CcCCEEECcCCcC-CcccC---CcCc
Confidence 22222 12235555555443 3222111 11 3488888887743 33432 2357
Q ss_pred ccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEeccCCCCc--ccccccCCC---------
Q 046587 577 LEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLE--ALPNDLHKI--------- 645 (703)
Q Consensus 577 L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~--~lp~~~~~l--------- 645 (703)
|++|++++|. +..+|.. +++|++|++++| .+..+|. .+++|+.|++++|.... .+|.++..+
T Consensus 319 L~~L~Ls~N~-l~~lp~~---~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i 391 (454)
T 1jl5_A 319 LEELNVSNNK-LIELPAL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391 (454)
T ss_dssp CCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----
T ss_pred CCEEECCCCc-ccccccc---CCcCCEEECCCC-ccccccc--hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccc
Confidence 8888888874 4456654 478888888887 4556776 57788888888865444 566666665
Q ss_pred ----CCcceEeeccCCCcccCCCCCCCCCcCeEEEecCCCCcccc
Q 046587 646 ----NSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLV 686 (703)
Q Consensus 646 ----~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~ 686 (703)
++|+.|++++| .+..++ .+|++++.|.+.+|.....++
T Consensus 392 ~~~~~~L~~L~ls~N-~l~~~~--~iP~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 392 PELPQNLKQLHVETN-PLREFP--DIPESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp ---------------------------------------------
T ss_pred ccccCcCCEEECCCC-cCCccc--cchhhHhheeCcCcccCCccc
Confidence 77888888888 555443 256778888888776555444
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=3.5e-27 Score=252.75 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=98.8
Q ss_pred CCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccE
Q 046587 547 SSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISR 626 (703)
Q Consensus 547 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 626 (703)
+..+++|++|++++|... .++. +..+++|++|++++|. ++.++. +..+++|+.|++++|.. ..++....+++|+.
T Consensus 261 ~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~ 335 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNI-SDISPVSSLTKLQR 335 (466)
T ss_dssp GTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCC-SCCGGGGGCTTCCE
T ss_pred hhcCCCCCEEECCCCccC-cccc-ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcC-CCchhhccCccCCE
Confidence 344566999999998544 4444 5578899999999985 445544 78899999999999954 44433456789999
Q ss_pred EEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCCCCCcCeEEEecCCCCc
Q 046587 627 VGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYK 683 (703)
Q Consensus 627 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~ 683 (703)
|++++| .++.++ .+..+++|+.|++++| .+..+++...+++|+.|++++|+...
T Consensus 336 L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred eECCCC-ccCCch-hhccCCCCCEEeCCCC-ccCccchhhcCCCCCEEeccCCcccC
Confidence 999997 566664 6889999999999999 56665555567899999999986443
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.5e-27 Score=265.60 Aligned_cols=484 Identities=16% Similarity=0.106 Sum_probs=278.2
Q ss_pred CcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccCc-cccCCCcccEEe
Q 046587 191 RRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLPP-KMRNLINLRHLD 267 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 267 (703)
..+++|+|++|.|+.+| .+|.++++|++|+|++|.|+.+|+ .|++|++|++|+|++| .++.+|. .|+++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 36999999999999996 579999999999999999999875 5899999999999998 6888875 589999999999
Q ss_pred ecCccccccCCc-cCCCCCCCcccCeeEeecCC--CCCChhhhhhhhccCCceEEeCccccCChhchhhhhccccccccc
Q 046587 268 IRGAKLLKEMPF-GMKELKNLQTLSNFIVGKGE--TASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEA 344 (703)
Q Consensus 268 l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~--~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~ 344 (703)
+++|. +..+|. .++++++|++|++..+.... .+..+..++.|+.+. +.. +.........+..+.+++.
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~----L~~----N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD----LSS----NKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE----CCS----SCCCEECGGGGHHHHTCTT
T ss_pred CCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc----ccC----ccccccccccccchhhhhh
Confidence 99996 455554 48999999999987766543 234455555555442 111 1112222223333333322
Q ss_pred ceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCC--CCcccCCCCCCCccEEEEeccCC--CCcCC-----
Q 046587 345 LTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGAR--FPHWIGDPSFSKMKVLKLENCHN--CVSLP----- 415 (703)
Q Consensus 345 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~~~~L~~L~l~~~~~--~~~l~----- 415 (703)
+.....-.. +.... +.........+..+.+.++.... .+..+.. +..++...+..+.. ...+.
T Consensus 202 ~~~~~~ls~-n~l~~-----i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~--l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 202 LNLSLDLSL-NPMNF-----IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG--LAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp CCCEEECTT-CCCCE-----ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHT--TTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred hhhhhhccc-Ccccc-----cCcccccchhhhhhhhhcccccccccchhhcC--Cccccccccccccccccccccccccc
Confidence 211110000 00000 00111112234455555443211 1112222 44444444433221 11111
Q ss_pred CCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccce--
Q 046587 416 SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAE-- 493 (703)
Q Consensus 416 ~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~-- 493 (703)
.+..+..+....+..+.......... .....+.+++.+.+.-.....+.. .....+|+.|++.+|..-.....
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l 348 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYYLDGII---DLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKL 348 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSCEEECT---TTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCCBC
T ss_pred ccccccchhhhhhhhhhhcccccchh---hhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCcccc
Confidence 23333444444443222111110000 011223444444332222222111 12356888999888752211000
Q ss_pred ---eeEEEcCCCccccccccCCCCCccEEEEec---------------CcccccccccccccCCCCCCCCCCCCcccccE
Q 046587 494 ---WMLYIRDRDCLTFIARRRLPASLKRLEIEN---------------CEKLQRLFDDEEDASSSSPSPASSSSPVMLQH 555 (703)
Q Consensus 494 ---~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~---------------~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 555 (703)
....+.....-..+.... .++|+.+++++ +.+++.+....+...... ..+..+++|+.
T Consensus 349 ~~L~~l~l~~n~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~---~~~~~l~~L~~ 424 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS---SNFLGLEQLEH 424 (635)
T ss_dssp TTCCEEEEESCCSCCBCCCCB-CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC---SCCTTCTTCCE
T ss_pred hhhhhcccccccCCCCccccc-ccccccchhhccccccccccccchhhhhhhhhhhcccccccccc---ccccccccccc
Confidence 001111111000011111 12555555443 223333333333322211 13445566888
Q ss_pred EEEecCCCCcccc-ccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCC--CCCCCCccEEEeccC
Q 046587 556 LSIENCPELTSLS-SGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPE--RGLPNTISRVGIGEC 632 (703)
Q Consensus 556 L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~c 632 (703)
+++.++......+ ..+..+++++.++++.|......+..+..+++|+.|++++|.....+.. ...+++|+.|++++|
T Consensus 425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N 504 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504 (635)
T ss_dssp EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence 8887665444333 3345678899999998876666677888899999999999976655432 234789999999997
Q ss_pred CCCcccccccCCCCCcceEeeccCCCcccCCCCC--CCCCcCeEEEecCCCCccccccCcCCC-CceeeEEecC
Q 046587 633 DKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEG--FPTSLTSLRIGDFKMYKTLVQWGLHRL-TSLGRLYIVD 703 (703)
Q Consensus 633 ~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~~l~~~~~~~l~~l-~~L~~L~l~~ 703 (703)
......|..+.++++|++|+|++| +++.++... .+++|++|++++|.. +.+++..+.++ ++|+.|++++
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCC-CBCCSSCTTCCCTTCCEEECTT
T ss_pred ccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcC-CCCCHHHHHhhhCcCCEEEeeC
Confidence 544444677899999999999999 888888763 368999999999864 44544458888 6899999974
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=7.2e-27 Score=250.27 Aligned_cols=133 Identities=13% Similarity=0.022 Sum_probs=99.1
Q ss_pred ccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCC--CCCCCCccEEE
Q 046587 551 VMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPE--RGLPNTISRVG 628 (703)
Q Consensus 551 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~ 628 (703)
++|++|++++|......|..+..+++|++|++++|......|..+.++++|++|++++|. +..++. ...+++|+.|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEE
Confidence 458888888887766667777778888888888886665557778888888888888884 444432 23467888888
Q ss_pred eccCCCCcccccccCCCCCcceEeeccCCCcccCCCCC--CCCCcCeEEEecCCCCccc
Q 046587 629 IGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEG--FPTSLTSLRIGDFKMYKTL 685 (703)
Q Consensus 629 l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~~l~~~ 685 (703)
+++|......|..+..+++|++|++++| .++.+|... .+++|+.|++++|+.....
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 8887544444777888888888888888 778887653 3678888888887754433
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.9e-26 Score=247.06 Aligned_cols=328 Identities=18% Similarity=0.256 Sum_probs=181.2
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEE
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHL 266 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 266 (703)
+..+++|++|++++|.+..+|. ++++++|++|++++|.+..++. ++++++|++|++++| .+..+|. ++++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEE
Confidence 4566777777777777777765 7777777777777777777665 777777777777776 5556655 7777777777
Q ss_pred eecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccce
Q 046587 267 DIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALT 346 (703)
Q Consensus 267 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 346 (703)
++++|. ...++ .++.+++|+.|.+.. ....
T Consensus 140 ~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~~~----------------------------------------------- 169 (466)
T 1o6v_A 140 ELSSNT-ISDIS-ALSGLTSLQQLSFGN-QVTD----------------------------------------------- 169 (466)
T ss_dssp EEEEEE-ECCCG-GGTTCTTCSEEEEEE-SCCC-----------------------------------------------
T ss_pred ECCCCc-cCCCh-hhccCCcccEeecCC-cccC-----------------------------------------------
Confidence 777774 33343 366666666665421 0000
Q ss_pred EEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCcccee
Q 046587 347 LDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHL 426 (703)
Q Consensus 347 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L 426 (703)
...+..+++|+.|+++++....++. +.. +++|++|++++|......+ ++.+++|+.|
T Consensus 170 -------------------~~~~~~l~~L~~L~l~~n~l~~~~~-l~~--l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 226 (466)
T 1o6v_A 170 -------------------LKPLANLTTLERLDISSNKVSDISV-LAK--LTNLESLIATNNQISDITP-LGILTNLDEL 226 (466)
T ss_dssp -------------------CGGGTTCTTCCEEECCSSCCCCCGG-GGG--CTTCSEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred -------------------chhhccCCCCCEEECcCCcCCCChh-hcc--CCCCCEEEecCCccccccc-ccccCCCCEE
Confidence 0012223344444444444443332 222 5566666666655433222 4455666666
Q ss_pred eecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCcccc
Q 046587 427 AVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTF 506 (703)
Q Consensus 427 ~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~ 506 (703)
++++|.. +.++ . ...+++|+.|++++|.- ..
T Consensus 227 ~l~~n~l-~~~~--------------------------~-----l~~l~~L~~L~l~~n~l-----------------~~ 257 (466)
T 1o6v_A 227 SLNGNQL-KDIG--------------------------T-----LASLTNLTDLDLANNQI-----------------SN 257 (466)
T ss_dssp ECCSSCC-CCCG--------------------------G-----GGGCTTCSEEECCSSCC-----------------CC
T ss_pred ECCCCCc-ccch--------------------------h-----hhcCCCCCEEECCCCcc-----------------cc
Confidence 6655431 1110 0 01234444555544431 10
Q ss_pred ccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCc
Q 046587 507 IARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCP 586 (703)
Q Consensus 507 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 586 (703)
++. +.++++|+.+.++.|.+.... .+..+++|++|++++|... .++. +..+++|+.|++++|.
T Consensus 258 ~~~-----------~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 258 LAP-----------LSGLTKLTELKLGANQISNIS----PLAGLTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CGG-----------GTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCS-CCGG-GGGCTTCSEEECCSSC
T ss_pred chh-----------hhcCCCCCEEECCCCccCccc----cccCCCccCeEEcCCCccc-Cchh-hcCCCCCCEEECcCCc
Confidence 000 111222222222222222211 1344555777777777433 3333 4466778888888775
Q ss_pred CcccccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCC
Q 046587 587 ELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFP 663 (703)
Q Consensus 587 ~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~ 663 (703)
.....| +..+++|++|++++| .+..++....+++|+.|++++|......| +..+++|+.|++++| .+..+|
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~~~~~p 391 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ-AWTNAP 391 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE-EEECCC
T ss_pred CCCchh--hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC-cccCCc
Confidence 443332 567788888888777 44445544556778888888765433333 677888888888888 455544
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.6e-26 Score=245.27 Aligned_cols=186 Identities=17% Similarity=0.141 Sum_probs=98.0
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEE
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHL 266 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 266 (703)
+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++| .+..+| ++++++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 344556666666666665555 4566666666666666666554 556666666666665 344443 5566666666
Q ss_pred eecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccce
Q 046587 267 DIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALT 346 (703)
Q Consensus 267 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 346 (703)
++++|. +..+| ++.+++|++|++..+..... .+..+++|+.|+
T Consensus 112 ~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l----------------------------------~l~~l~~L~~L~ 154 (457)
T 3bz5_A 112 NCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEI----------------------------------DVSHNTQLTELD 154 (457)
T ss_dssp ECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCC----------------------------------CCTTCTTCCEEE
T ss_pred ECCCCc-CCeec--CCCCCcCCEEECCCCcccee----------------------------------ccccCCcCCEEE
Confidence 666664 23333 55555555554432221110 022233344444
Q ss_pred EEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCcccee
Q 046587 347 LDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHL 426 (703)
Q Consensus 347 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L 426 (703)
++.+...... .+..+++|+.|+++++....+| +.. +++|+.|++++|..... .++.+++|+.|
T Consensus 155 l~~n~~~~~~-----------~~~~l~~L~~L~ls~n~l~~l~--l~~--l~~L~~L~l~~N~l~~~--~l~~l~~L~~L 217 (457)
T 3bz5_A 155 CHLNKKITKL-----------DVTPQTQLTTLDCSFNKITELD--VSQ--NKLLNRLNCDTNNITKL--DLNQNIQLTFL 217 (457)
T ss_dssp CTTCSCCCCC-----------CCTTCTTCCEEECCSSCCCCCC--CTT--CTTCCEEECCSSCCSCC--CCTTCTTCSEE
T ss_pred CCCCCccccc-----------ccccCCcCCEEECCCCccceec--ccc--CCCCCEEECcCCcCCee--ccccCCCCCEE
Confidence 4332210000 1334556666666666666555 332 66677777766665432 35566666677
Q ss_pred eecccc
Q 046587 427 AVKGLK 432 (703)
Q Consensus 427 ~l~~~~ 432 (703)
++++|.
T Consensus 218 ~Ls~N~ 223 (457)
T 3bz5_A 218 DCSSNK 223 (457)
T ss_dssp ECCSSC
T ss_pred ECcCCc
Confidence 666654
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.2e-26 Score=246.11 Aligned_cols=375 Identities=18% Similarity=0.193 Sum_probs=180.5
Q ss_pred CccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcc-------------cEEeecCccc
Q 046587 207 PMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINL-------------RHLDIRGAKL 273 (703)
Q Consensus 207 p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L-------------~~L~l~~~~~ 273 (703)
|+.+ ...+|++|++++|.+.++|++++++++|++|++++|.....+|.+++++++| ++|++++|.
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~- 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG- 82 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-
Confidence 4444 4589999999999999999999999999999999986666899999999876 999999986
Q ss_pred cccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccc-cccccceEEccCC
Q 046587 274 LKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEK-HNLEALTLDWGSQ 352 (703)
Q Consensus 274 ~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~ 352 (703)
+..+|.. .++|++|++..+.....+..+ +.|+.+ .+.. +.... +... ++|+.|+++.+.-
T Consensus 83 l~~lp~~---~~~L~~L~l~~n~l~~lp~~~---~~L~~L----~l~~----n~l~~-----l~~~~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 83 LSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSL----LVDN----NNLKA-----LSDLPPLLEYLGVSNNQL 143 (454)
T ss_dssp CSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEE----ECCS----SCCSC-----CCSCCTTCCEEECCSSCC
T ss_pred cccCCCC---cCCCCEEEccCCcCCcccccc---CCCcEE----ECCC----CccCc-----ccCCCCCCCEEECcCCCC
Confidence 5566652 367888877655544433222 222222 1111 00000 1111 4666666654431
Q ss_pred CCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecccc
Q 046587 353 FDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLK 432 (703)
Q Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 432 (703)
. . +..+..+++|+.|+++++....+|.+ +++|++|++++|...+ +|.++.+++|++|++++|.
T Consensus 144 ~-----~------lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 144 E-----K------LPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS 206 (454)
T ss_dssp S-----S------CCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred C-----C------CcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc-CccccCCCCCCEEECCCCc
Confidence 0 0 11355566677777777666665543 2467777777766543 4566667777777776664
Q ss_pred cceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCC
Q 046587 433 KLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRL 512 (703)
Q Consensus 433 ~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~ 512 (703)
. +.++. ..++|+.|+++-+....+.. ...+++|+.|++++|. +..++ ..
T Consensus 207 l-~~l~~---------~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~-----------------l~~l~--~~ 255 (454)
T 1jl5_A 207 L-KKLPD---------LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNL-----------------LKTLP--DL 255 (454)
T ss_dssp C-SSCCC---------CCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSC-----------------CSSCC--SC
T ss_pred C-CcCCC---------CcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCc-----------------CCccc--cc
Confidence 2 21211 13456665554444443321 1345666666666664 12222 12
Q ss_pred CCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCccccc
Q 046587 513 PASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESIL 592 (703)
Q Consensus 513 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p 592 (703)
+++|+.|+++++ .+.+... . .++|++|++++|. +..+|. .+++|+.|++++|. +..++
T Consensus 256 ~~~L~~L~l~~N-----------~l~~l~~---~---~~~L~~L~ls~N~-l~~l~~---~~~~L~~L~l~~N~-l~~i~ 313 (454)
T 1jl5_A 256 PPSLEALNVRDN-----------YLTDLPE---L---PQSLTFLDVSENI-FSGLSE---LPPNLYYLNASSNE-IRSLC 313 (454)
T ss_dssp CTTCCEEECCSS-----------CCSCCCC---C---CTTCCEEECCSSC-CSEESC---CCTTCCEEECCSSC-CSEEC
T ss_pred ccccCEEECCCC-----------cccccCc---c---cCcCCEEECcCCc-cCcccC---cCCcCCEEECcCCc-CCccc
Confidence 234444444433 2222111 1 1347777777764 333332 23567777777763 33343
Q ss_pred ccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCccc---CCCC-CCC
Q 046587 593 DGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVS---FPEE-GFP 668 (703)
Q Consensus 593 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~---l~~~-~~~ 668 (703)
.. .++|++|++++|. +..+|. .+++|+.|++++| .++.+|. .+++|++|++++| .+.. +|.. +.+
T Consensus 314 ~~---~~~L~~L~Ls~N~-l~~lp~--~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 314 DL---PPSLEELNVSNNK-LIELPA--LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN-PLREFPDIPESVEDL 382 (454)
T ss_dssp CC---CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSCCCCCTTCCEE
T ss_pred CC---cCcCCEEECCCCc-cccccc--cCCcCCEEECCCC-ccccccc---hhhhccEEECCCC-CCCcCCCChHHHHhh
Confidence 21 1467777777763 444554 2567777777774 4556666 3677777777777 4443 3322 111
Q ss_pred -------------CCcCeEEEecCCCCc
Q 046587 669 -------------TSLTSLRIGDFKMYK 683 (703)
Q Consensus 669 -------------~~L~~L~i~~c~~l~ 683 (703)
++|+.|++++|+...
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp ECCC------------------------
T ss_pred hhcccccccccccCcCCEEECCCCcCCc
Confidence 567777777765444
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=8.5e-26 Score=241.95 Aligned_cols=117 Identities=13% Similarity=-0.022 Sum_probs=87.3
Q ss_pred CCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCC-CCCCCCc
Q 046587 546 SSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPE-RGLPNTI 624 (703)
Q Consensus 546 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L 624 (703)
.+..+++|++|++++|......|..+..+++|++|++++|......|..+.++++|++|++++|......|. ...+++|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 556677799999988876665566777788899999999866555577788899999999999854333332 2346889
Q ss_pred cEEEeccCCCCccccc-ccCCCCCcceEeeccCCCcccCC
Q 046587 625 SRVGIGECDKLEALPN-DLHKINSLRYLSIQLCRNLVSFP 663 (703)
Q Consensus 625 ~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~ 663 (703)
+.|++++| .++.+|. .+..+++|++|++++|+--.+.|
T Consensus 374 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 374 KELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999985 4666665 45789999999999996555544
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.4e-25 Score=230.95 Aligned_cols=98 Identities=20% Similarity=0.367 Sum_probs=70.6
Q ss_pred cCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEe
Q 046587 188 PKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLD 267 (703)
Q Consensus 188 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 267 (703)
..+++|++|+++++.+..+|. ++.+++|++|++++|.++.+|. ++++++|++|++++| .+..+| .++++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 356778888888888877764 7788888888888888887776 788888888888887 566665 478888888888
Q ss_pred ecCccccccCCccCCCCCCCcccC
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLS 291 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~ 291 (703)
+++|. +..++. +..+++|++|+
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSLN 138 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEE
T ss_pred CcCCc-ccCchh-hccCCceeEEE
Confidence 88875 333332 44444444443
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=5.9e-25 Score=233.21 Aligned_cols=311 Identities=16% Similarity=0.108 Sum_probs=195.3
Q ss_pred CccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCC
Q 046587 207 PMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKN 286 (703)
Q Consensus 207 p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~ 286 (703)
+.+++++++|++|++++|.++.+| .++.+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 446789999999999999999987 7999999999999998 677776 8999999999999996 44454 778888
Q ss_pred CcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhh
Q 046587 287 LQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVL 366 (703)
Q Consensus 287 L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 366 (703)
|++|++..+.....
T Consensus 108 L~~L~L~~N~l~~l------------------------------------------------------------------ 121 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL------------------------------------------------------------------ 121 (457)
T ss_dssp CCEEECCSSCCSCC------------------------------------------------------------------
T ss_pred CCEEECCCCcCCee------------------------------------------------------------------
Confidence 88887543321110
Q ss_pred hcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecccccceeecccccCCCc
Q 046587 367 EILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGF 446 (703)
Q Consensus 367 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 446 (703)
.+..+++|+.|+++++....++ +.. +++|++|++++|...+.+ .++.+++|+.|++++|. ++.++ +
T Consensus 122 -~~~~l~~L~~L~l~~N~l~~l~--l~~--l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~l~--l----- 187 (457)
T 3bz5_A 122 -DVSQNPLLTYLNCARNTLTEID--VSH--NTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNK-ITELD--V----- 187 (457)
T ss_dssp -CCTTCTTCCEEECTTSCCSCCC--CTT--CTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSC-CCCCC--C-----
T ss_pred -cCCCCCcCCEEECCCCccceec--ccc--CCcCCEEECCCCCccccc-ccccCCcCCEEECCCCc-cceec--c-----
Confidence 0223456666777777666654 343 889999999999766666 57788999999999875 33332 1
Q ss_pred ccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcc
Q 046587 447 SMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEK 526 (703)
Q Consensus 447 ~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 526 (703)
..+++|+.|.+..+.+..+ ....+++|+.|++++|. +..+| +..+++
T Consensus 188 -~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~-----------------l~~ip------------~~~l~~ 234 (457)
T 3bz5_A 188 -SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNK-----------------LTEID------------VTPLTQ 234 (457)
T ss_dssp -TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSC-----------------CSCCC------------CTTCTT
T ss_pred -ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCc-----------------ccccC------------ccccCC
Confidence 2367777776665555443 23457788888888775 22222 233444
Q ss_pred cccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEe
Q 046587 527 LQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYI 606 (703)
Q Consensus 527 L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l 606 (703)
|+.++++.|.+.+.. +..+++|+.|+++++ +|+.|++++|.....+| +..+++|+.|++
T Consensus 235 L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~L 293 (457)
T 3bz5_A 235 LTYFDCSVNPLTELD-----VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDV 293 (457)
T ss_dssp CSEEECCSSCCSCCC-----CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCC
T ss_pred CCEEEeeCCcCCCcC-----HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEEC
Confidence 555555555444432 222333444443322 23444444444444433 234444455555
Q ss_pred cCCCCCCccCCC---------CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccC
Q 046587 607 WKCPSLVSFPER---------GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSF 662 (703)
Q Consensus 607 ~~c~~l~~~~~~---------~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l 662 (703)
++|..++.+|.. ...++|+.|++++| .++.++ +.++++|+.|++++| .++.+
T Consensus 294 s~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 294 THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS-CCCBC
T ss_pred CCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC-CCCCc
Confidence 444443333310 11245667777764 355553 667777777777777 55554
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=230.79 Aligned_cols=94 Identities=30% Similarity=0.413 Sum_probs=54.7
Q ss_pred cEEecCCCCCCccCccccCCCcCceEeccCCCCcccc-ccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCcc
Q 046587 194 RMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLP-ESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAK 272 (703)
Q Consensus 194 r~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 272 (703)
+.++.++..++.+|..+. .++++|+|++|.++.++ ..+.++++|++|+|++|......|..|+++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 456666666666666553 46677777777776553 456667777777777663222335566677777777776664
Q ss_pred ccccCCcc-CCCCCCCccc
Q 046587 273 LLKEMPFG-MKELKNLQTL 290 (703)
Q Consensus 273 ~~~~~p~~-i~~l~~L~~L 290 (703)
+..+|.. ++++++|++|
T Consensus 92 -l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 92 -LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp -CCSCCTTSSTTCTTCCEE
T ss_pred -CCccCcccccCCCCCCEE
Confidence 3333332 3444444444
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4.1e-24 Score=223.58 Aligned_cols=303 Identities=17% Similarity=0.207 Sum_probs=182.5
Q ss_pred CCCcccEEecCCCCCCccCcc-ccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCccc-CccccCCCcccE
Q 046587 189 KFRRLRMLSLQGYCIGELPMS-FEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKL-PPKMRNLINLRH 265 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~ 265 (703)
.+.++++|+++++.++.+|.. +..+++|++|++++|.++.+|. .++.+++|++|++++|. +..+ |..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCE
Confidence 357889999999988888765 5788899999999998887764 78889999999999874 5555 455788999999
Q ss_pred EeecCccccccCCcc-CCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhccccccccc
Q 046587 266 LDIRGAKLLKEMPFG-MKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEA 344 (703)
Q Consensus 266 L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~ 344 (703)
|++++|. +..+|.. ++++++|++|++
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L---------------------------------------------------- 148 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSM---------------------------------------------------- 148 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEEC----------------------------------------------------
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEEC----------------------------------------------------
Confidence 9998885 3455543 244444444432
Q ss_pred ceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCC-cccCCCCCCCccEEEEeccCCCCcCCCCCCcCcc
Q 046587 345 LTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFP-HWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSL 423 (703)
Q Consensus 345 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L 423 (703)
+++....++ ..+.. +++|+.|++++|..... .++.+++|
T Consensus 149 ------------------------------------~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~--~~~~l~~L 188 (390)
T 3o6n_A 149 ------------------------------------SNNNLERIEDDTFQA--TTSLQNLQLSSNRLTHV--DLSLIPSL 188 (390)
T ss_dssp ------------------------------------CSSCCCBCCTTTTSS--CTTCCEEECCSSCCSBC--CGGGCTTC
T ss_pred ------------------------------------CCCccCccChhhccC--CCCCCEEECCCCcCCcc--cccccccc
Confidence 222222221 12222 56666666666654332 23445556
Q ss_pred ceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCc
Q 046587 424 KHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDC 503 (703)
Q Consensus 424 ~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~ 503 (703)
+.|++++|.. ..+ ...++|+.|++++|.
T Consensus 189 ~~L~l~~n~l------------------------------~~~-----~~~~~L~~L~l~~n~----------------- 216 (390)
T 3o6n_A 189 FHANVSYNLL------------------------------STL-----AIPIAVEELDASHNS----------------- 216 (390)
T ss_dssp SEEECCSSCC------------------------------SEE-----ECCSSCSEEECCSSC-----------------
T ss_pred ceeecccccc------------------------------ccc-----CCCCcceEEECCCCe-----------------
Confidence 6665554421 111 012356666666654
Q ss_pred cccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEee
Q 046587 504 LTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIR 583 (703)
Q Consensus 504 l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 583 (703)
+..++. .. .++|++|++++|... .. ..+..+++|++|+++
T Consensus 217 l~~~~~-~~-------------------------------------~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 217 INVVRG-PV-------------------------------------NVELTILKLQHNNLT-DT-AWLLNYPGLVEVDLS 256 (390)
T ss_dssp CCEEEC-CC-------------------------------------CSSCCEEECCSSCCC-CC-GGGGGCTTCSEEECC
T ss_pred eeeccc-cc-------------------------------------cccccEEECCCCCCc-cc-HHHcCCCCccEEECC
Confidence 111111 11 123666666665332 22 233455667777777
Q ss_pred cCcCcccccccCCCCCCCcEEEecCCCCCCccCCC-CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccC
Q 046587 584 DCPELESILDGLPNLKCLQSIYIWKCPSLVSFPER-GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSF 662 (703)
Q Consensus 584 ~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l 662 (703)
+|......|..+..+++|++|++++| .+..++.. ..+++|+.|++++| .++.+|..+..+++|++|++++| .++.+
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~ 333 (390)
T 3o6n_A 257 YNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTL 333 (390)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCC
T ss_pred CCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-cccee
Confidence 76544444666666777777777766 34444432 23566777777775 45566666666777777777777 56666
Q ss_pred CCCCCCCCcCeEEEecCCC
Q 046587 663 PEEGFPTSLTSLRIGDFKM 681 (703)
Q Consensus 663 ~~~~~~~~L~~L~i~~c~~ 681 (703)
+. ..+++|+.|++++|+.
T Consensus 334 ~~-~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 334 KL-STHHTLKNLTLSHNDW 351 (390)
T ss_dssp CC-CTTCCCSEEECCSSCE
T ss_pred Cc-hhhccCCEEEcCCCCc
Confidence 53 3456777777777653
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.4e-24 Score=225.37 Aligned_cols=304 Identities=15% Similarity=0.127 Sum_probs=217.7
Q ss_pred CCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCc-cccCCCcCceEeccCCCCcccc-ccccccc
Q 046587 160 EIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPM-SFEDLRLLRLLNLADTDIRSLP-ESTCTLL 237 (703)
Q Consensus 160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~ 237 (703)
.++++|.+.+.++. ...++...|..+++|++|++++|.+..++. .|+.+++|++|++++|.++.+| ..+++++
T Consensus 43 ~l~~l~~l~l~~~~-----l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCE-----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCc-----hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 46888999887654 344556668889999999999999988864 8999999999999999999876 4589999
Q ss_pred cCcEEecCCCCCCcccCcc-ccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCc
Q 046587 238 NLEILILRNCSRLIKLPPK-MRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDE 316 (703)
Q Consensus 238 ~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~ 316 (703)
+|++|++++| .+..+|.. ++++++|++|++++|......|..++.+++|++|++.
T Consensus 118 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~----------------------- 173 (390)
T 3o6n_A 118 LLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS----------------------- 173 (390)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC-----------------------
T ss_pred CCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC-----------------------
Confidence 9999999998 67788876 5899999999999997544444446666666666532
Q ss_pred eEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCC
Q 046587 317 LCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPS 396 (703)
Q Consensus 317 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 396 (703)
++....++ +. .
T Consensus 174 -----------------------------------------------------------------~n~l~~~~--~~--~ 184 (390)
T 3o6n_A 174 -----------------------------------------------------------------SNRLTHVD--LS--L 184 (390)
T ss_dssp -----------------------------------------------------------------SSCCSBCC--GG--G
T ss_pred -----------------------------------------------------------------CCcCCccc--cc--c
Confidence 22222221 11 2
Q ss_pred CCCccEEEEeccCCCCcCCCCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCC
Q 046587 397 FSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPS 476 (703)
Q Consensus 397 ~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~ 476 (703)
+++|+.|++++|.... +...++|+.|++++|.. +.++ ...+++
T Consensus 185 l~~L~~L~l~~n~l~~----~~~~~~L~~L~l~~n~l-~~~~--------------------------------~~~~~~ 227 (390)
T 3o6n_A 185 IPSLFHANVSYNLLST----LAIPIAVEELDASHNSI-NVVR--------------------------------GPVNVE 227 (390)
T ss_dssp CTTCSEEECCSSCCSE----EECCSSCSEEECCSSCC-CEEE--------------------------------CCCCSS
T ss_pred ccccceeecccccccc----cCCCCcceEEECCCCee-eecc--------------------------------cccccc
Confidence 7899999999986543 23346899999988752 1111 012468
Q ss_pred ccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEE
Q 046587 477 LETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHL 556 (703)
Q Consensus 477 L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 556 (703)
|+.|++++|.- . ..+ .+..+++|++|
T Consensus 228 L~~L~l~~n~l-----------------~-----------------~~~--------------------~l~~l~~L~~L 253 (390)
T 3o6n_A 228 LTILKLQHNNL-----------------T-----------------DTA--------------------WLLNYPGLVEV 253 (390)
T ss_dssp CCEEECCSSCC-----------------C-----------------CCG--------------------GGGGCTTCSEE
T ss_pred ccEEECCCCCC-----------------c-----------------ccH--------------------HHcCCCCccEE
Confidence 89999888851 1 001 22233447788
Q ss_pred EEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCC-CCCCCCccEEEeccCCCC
Q 046587 557 SIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPE-RGLPNTISRVGIGECDKL 635 (703)
Q Consensus 557 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l 635 (703)
++++|......|..+..+++|++|++++| .++.+|..+..+++|++|++++|. +..+|. ...+++|+.|++++|+ +
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i 330 (390)
T 3o6n_A 254 DLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-I 330 (390)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-C
T ss_pred ECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-c
Confidence 88887655555666667788888888887 455677777778888888888884 444443 2235778888888854 5
Q ss_pred cccccccCCCCCcceEeeccCC
Q 046587 636 EALPNDLHKINSLRYLSIQLCR 657 (703)
Q Consensus 636 ~~lp~~~~~l~~L~~L~l~~c~ 657 (703)
+.+| +..+++|+.|++++|+
T Consensus 331 ~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 331 VTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCC--CCTTCCCSEEECCSSC
T ss_pred ceeC--chhhccCCEEEcCCCC
Confidence 6664 6678889999999884
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.3e-24 Score=221.93 Aligned_cols=125 Identities=19% Similarity=0.313 Sum_probs=98.0
Q ss_pred ccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccc
Q 046587 158 FNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLL 237 (703)
Q Consensus 158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 237 (703)
+..+++++.|.+.++. ...+ + .+..+++|++|++++|.+..+|. +..+++|++|++++|.++.+| .+++++
T Consensus 40 ~~~l~~L~~L~l~~~~-----i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEK-----VASI-Q-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECCSSC-----CCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred chhcccccEEEEeCCc-----cccc-h-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCC
Confidence 4467788888876654 1111 1 26778999999999999988876 889999999999999998885 689999
Q ss_pred cCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeE
Q 046587 238 NLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFI 294 (703)
Q Consensus 238 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 294 (703)
+|++|++++| .+..+|. +..+++|++|++++|.....++ .++.+++|++|++..
T Consensus 111 ~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 111 NLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTE 164 (347)
T ss_dssp TCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCS
T ss_pred cCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecC
Confidence 9999999997 5777776 8899999999999996555443 477777777776543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.2e-24 Score=233.56 Aligned_cols=99 Identities=21% Similarity=0.369 Sum_probs=66.5
Q ss_pred CCcccEEecCCCCCCccCcc-ccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccC-ccccCCCcccEE
Q 046587 190 FRRLRMLSLQGYCIGELPMS-FEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHL 266 (703)
Q Consensus 190 l~~Lr~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L 266 (703)
+.++++++++++.++.+|.. ++.+++|++|+|++|.++.+|. .++.+++|++|+|++|. +..+| ..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEE
Confidence 45677888888877777654 4677788888888888776654 67778888888888774 44444 446778888888
Q ss_pred eecCccccccCCcc-CCCCCCCccc
Q 046587 267 DIRGAKLLKEMPFG-MKELKNLQTL 290 (703)
Q Consensus 267 ~l~~~~~~~~~p~~-i~~l~~L~~L 290 (703)
++++|. +..+|.. ++.+++|++|
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEE
Confidence 887774 3344433 2444444433
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=7.5e-24 Score=228.03 Aligned_cols=295 Identities=19% Similarity=0.187 Sum_probs=182.0
Q ss_pred CcccEEecCCCCCCcc-CccccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccCcc-ccCCCcccEEe
Q 046587 191 RRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLPPK-MRNLINLRHLD 267 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 267 (703)
+.+++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..++++++|++|+|++| .+..+|.. ++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 4688888888888777 46788888888888888888866 667888888888888887 56667653 67888888888
Q ss_pred ecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceE
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTL 347 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 347 (703)
+++|......|..++.+++|++|++..+..... .
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------------~--------------- 144 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-------------------------------S--------------- 144 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-------------------------------C---------------
T ss_pred CCCCccccCChhHccccccCCEEECCCCcccee-------------------------------C---------------
Confidence 888876555566677777777776533211100 0
Q ss_pred EccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcc-cCCCCCCCccEEEEeccCCCCcCC-CCCCcCccce
Q 046587 348 DWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHW-IGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKH 425 (703)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~ 425 (703)
...+..+++|+.|++.++....+|.. +.. +++|+.|++++|......+ .+..+++|+.
T Consensus 145 ------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 204 (477)
T 2id5_A 145 ------------------HRAFSGLNSLEQLTLEKCNLTSIPTEALSH--LHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204 (477)
T ss_dssp ------------------TTSSTTCTTCCEEEEESCCCSSCCHHHHTT--CTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred ------------------hhhccCCCCCCEEECCCCcCcccChhHhcc--cCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence 01223345566666666666665542 443 7788888888877655444 5777888888
Q ss_pred eeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccc
Q 046587 426 LAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLT 505 (703)
Q Consensus 426 L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~ 505 (703)
|++++|..+..++..... ..+|+.|++++|. +.
T Consensus 205 L~l~~~~~~~~~~~~~~~------------------------------~~~L~~L~l~~n~-----------------l~ 237 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLY------------------------------GLNLTSLSITHCN-----------------LT 237 (477)
T ss_dssp EEEECCTTCCEECTTTTT------------------------------TCCCSEEEEESSC-----------------CC
T ss_pred eeCCCCccccccCccccc------------------------------CccccEEECcCCc-----------------cc
Confidence 888877665554432111 1245555555553 11
Q ss_pred cccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecC
Q 046587 506 FIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDC 585 (703)
Q Consensus 506 ~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 585 (703)
.++... +.++++|+.|+++.|.+....+. .+..+++|++|++++|......|..+..+++|+.|++++|
T Consensus 238 ~~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 238 AVPYLA---------VRHLVYLRFLNLSYNPISTIEGS--MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SCCHHH---------HTTCTTCCEEECCSSCCCEECTT--SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred ccCHHH---------hcCccccCeeECCCCcCCccChh--hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 111100 11222222233332322222211 4555666777777777655555666666777888888777
Q ss_pred cCcccccccCCCCCCCcEEEecCCC
Q 046587 586 PELESILDGLPNLKCLQSIYIWKCP 610 (703)
Q Consensus 586 ~~l~~~p~~~~~l~~L~~L~l~~c~ 610 (703)
......+..+..+++|++|++++|+
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cCceeCHhHcCCCcccCEEEccCCC
Confidence 4333233446677778888887775
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=7e-24 Score=234.08 Aligned_cols=214 Identities=17% Similarity=0.154 Sum_probs=151.3
Q ss_pred CCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCccccc-cccccc
Q 046587 160 EIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSLPE-STCTLL 237 (703)
Q Consensus 160 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~ 237 (703)
.+.+++.+.+.++. ...+++.+|..+++|++|++++|.+..+| ..|+.+++|++|+|++|.++.+|+ .+++++
T Consensus 49 ~l~~l~~l~l~~~~-----l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNST-----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCE-----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCC-----CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 45778888776654 34455667888999999999999998885 489999999999999999998875 469999
Q ss_pred cCcEEecCCCCCCcccCcc-ccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCc
Q 046587 238 NLEILILRNCSRLIKLPPK-MRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDE 316 (703)
Q Consensus 238 ~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~ 316 (703)
+|++|+|++| .+..+|.. ++++++|++|++++|......|..++.+++|++|++..+..... .
T Consensus 124 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~------------- 187 (597)
T 3oja_B 124 LLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--D------------- 187 (597)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--C-------------
T ss_pred CCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--C-------------
Confidence 9999999998 67788876 58999999999999976666666799999999998654432211 0
Q ss_pred eEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCC
Q 046587 317 LCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPS 396 (703)
Q Consensus 317 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 396 (703)
+..+++|+.|+++++. +..+..++.|+.|+++++....+|..+
T Consensus 188 -------------------~~~l~~L~~L~l~~n~--------------l~~l~~~~~L~~L~ls~n~l~~~~~~~---- 230 (597)
T 3oja_B 188 -------------------LSLIPSLFHANVSYNL--------------LSTLAIPIAVEELDASHNSINVVRGPV---- 230 (597)
T ss_dssp -------------------GGGCTTCSEEECCSSC--------------CSEEECCTTCSEEECCSSCCCEEECSC----
T ss_pred -------------------hhhhhhhhhhhcccCc--------------cccccCCchhheeeccCCccccccccc----
Confidence 2223445555554322 112233456667777766665555433
Q ss_pred CCCccEEEEeccCCCCcCCCCCCcCccceeeecccc
Q 046587 397 FSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLK 432 (703)
Q Consensus 397 ~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 432 (703)
.++|+.|++++|.... .+.++.+++|+.|++++|.
T Consensus 231 ~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 231 NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC
T ss_pred CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCc
Confidence 3567777777666543 3455666666666666654
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.5e-23 Score=208.06 Aligned_cols=92 Identities=25% Similarity=0.331 Sum_probs=84.0
Q ss_pred CCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEee
Q 046587 189 KFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDI 268 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 268 (703)
....+++|+++++.+..+|..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 34789999999999999999999999999999999999999999999999999999998 56799999999999999999
Q ss_pred cCccccccCCccC
Q 046587 269 RGAKLLKEMPFGM 281 (703)
Q Consensus 269 ~~~~~~~~~p~~i 281 (703)
++|.....+|..+
T Consensus 158 ~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 158 RACPELTELPEPL 170 (328)
T ss_dssp EEETTCCCCCSCS
T ss_pred CCCCCccccChhH
Confidence 9987777777544
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.9e-21 Score=198.25 Aligned_cols=284 Identities=19% Similarity=0.211 Sum_probs=179.1
Q ss_pred CcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccCccccCCCcccEEeec
Q 046587 191 RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIR 269 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 269 (703)
.++++++++++.+..+|..+. .+|++|++++|.++.+|. .++++++|++|++++|......|..++++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 468899999999999987765 689999999999998875 68899999999999984333347788999999999999
Q ss_pred CccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587 270 GAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDW 349 (703)
Q Consensus 270 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 349 (703)
+|. +..+|..+. ++|++|
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L----------------------------------------------------------- 126 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQEL----------------------------------------------------------- 126 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEE-----------------------------------------------------------
T ss_pred CCc-CCccChhhc--ccccEE-----------------------------------------------------------
Confidence 885 345554332 233333
Q ss_pred cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCc-ccCCCCCCCccEEEEeccCCCC--cCC-CCCCcCccce
Q 046587 350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPH-WIGDPSFSKMKVLKLENCHNCV--SLP-SLGLLSSLKH 425 (703)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~--~l~-~l~~l~~L~~ 425 (703)
+++++....++. .+.. +++|+.|++++|.... ..+ .+..+++|++
T Consensus 127 -----------------------------~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 127 -----------------------------RVHENEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp -----------------------------ECCSSCCCBBCHHHHTT--CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred -----------------------------ECCCCcccccCHhHhcC--CccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 223333322222 1222 6777777777776532 222 4566677777
Q ss_pred eeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccc
Q 046587 426 LAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLT 505 (703)
Q Consensus 426 L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~ 505 (703)
|++++|.. +.+ ... .+++|+.|++++|.
T Consensus 176 L~l~~n~l-~~l-----------------------------~~~---~~~~L~~L~l~~n~------------------- 203 (330)
T 1xku_A 176 IRIADTNI-TTI-----------------------------PQG---LPPSLTELHLDGNK------------------- 203 (330)
T ss_dssp EECCSSCC-CSC-----------------------------CSS---CCTTCSEEECTTSC-------------------
T ss_pred EECCCCcc-ccC-----------------------------Ccc---ccccCCEEECCCCc-------------------
Confidence 77766531 111 001 12556666666553
Q ss_pred cccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecC
Q 046587 506 FIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDC 585 (703)
Q Consensus 506 ~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 585 (703)
++.+ . +..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 204 ---------------------l~~~----------~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 204 ---------------------ITKV----------D--AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp ---------------------CCEE----------C--TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred ---------------------CCcc----------C--HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 1100 0 013445556888888888655444446667888999999988
Q ss_pred cCcccccccCCCCCCCcEEEecCCCCCCccCCCCC--------CCCccEEEeccCCCCc--ccccccCCCCCcceEeecc
Q 046587 586 PELESILDGLPNLKCLQSIYIWKCPSLVSFPERGL--------PNTISRVGIGECDKLE--ALPNDLHKINSLRYLSIQL 655 (703)
Q Consensus 586 ~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~ 655 (703)
.++.+|..+..+++|++|++++| .+..++...+ .++|+.|++++++... ..|..+..+++++.+++++
T Consensus 251 -~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 251 -KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp -CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred -cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 45578888888999999999888 4555554322 2456666666655321 2344556666666666666
Q ss_pred C
Q 046587 656 C 656 (703)
Q Consensus 656 c 656 (703)
|
T Consensus 329 N 329 (330)
T 1xku_A 329 Y 329 (330)
T ss_dssp -
T ss_pred c
Confidence 5
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3.9e-21 Score=196.09 Aligned_cols=282 Identities=18% Similarity=0.229 Sum_probs=169.6
Q ss_pred cccEEecCCCCCCccCccccCCCcCceEeccCCCCcccc-ccccccccCcEEecCCCCCCccc-CccccCCCcccEEeec
Q 046587 192 RLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLP-ESTCTLLNLEILILRNCSRLIKL-PPKMRNLINLRHLDIR 269 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 269 (703)
++++++++++.+..+|..+. .+|++|++++|.++.+| ..++++++|++|++++|. +..+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECC
Confidence 67888888888888887664 57888888888888764 467888888888888874 4444 5667888888888888
Q ss_pred CccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587 270 GAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDW 349 (703)
Q Consensus 270 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 349 (703)
+|. +..+|..+. +
T Consensus 111 ~n~-l~~l~~~~~--~---------------------------------------------------------------- 123 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--S---------------------------------------------------------------- 123 (332)
T ss_dssp SSC-CCSCCSSCC--T----------------------------------------------------------------
T ss_pred CCc-CCccCcccc--c----------------------------------------------------------------
Confidence 774 334443221 2
Q ss_pred cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcc-cCCCCCCCccEEEEeccCCCC--cCC-CCCCcCccce
Q 046587 350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHW-IGDPSFSKMKVLKLENCHNCV--SLP-SLGLLSSLKH 425 (703)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~--~l~-~l~~l~~L~~ 425 (703)
+|++|+++++....+|.. +.. +++|+.|++++|.... ..+ .++.+ +|++
T Consensus 124 ------------------------~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 124 ------------------------SLVELRIHDNRIRKVPKGVFSG--LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp ------------------------TCCEEECCSSCCCCCCSGGGSS--CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred ------------------------cCCEEECCCCccCccCHhHhCC--CccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 233333344444444432 332 6677777777766532 222 34444 5666
Q ss_pred eeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccc
Q 046587 426 LAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLT 505 (703)
Q Consensus 426 L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~ 505 (703)
|++++|.. ..+... ..++|++|++++|.
T Consensus 177 L~l~~n~l------------------------------~~l~~~---~~~~L~~L~l~~n~------------------- 204 (332)
T 2ft3_A 177 LRISEAKL------------------------------TGIPKD---LPETLNELHLDHNK------------------- 204 (332)
T ss_dssp CBCCSSBC------------------------------SSCCSS---SCSSCSCCBCCSSC-------------------
T ss_pred EECcCCCC------------------------------CccCcc---ccCCCCEEECCCCc-------------------
Confidence 66655431 110000 11344444444442
Q ss_pred cccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecC
Q 046587 506 FIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDC 585 (703)
Q Consensus 506 ~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 585 (703)
+....+ ..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 205 -------------------------------i~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 205 -------------------------------IQAIEL--EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp -------------------------------CCCCCT--TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred -------------------------------CCccCH--HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 222111 14555666888888887554444445667788999999888
Q ss_pred cCcccccccCCCCCCCcEEEecCCCCCCccCCCCC--------CCCccEEEeccCCCC--cccccccCCCCCcceEeecc
Q 046587 586 PELESILDGLPNLKCLQSIYIWKCPSLVSFPERGL--------PNTISRVGIGECDKL--EALPNDLHKINSLRYLSIQL 655 (703)
Q Consensus 586 ~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~ 655 (703)
.++.+|..+..+++|++|++++| .+..++...+ .++|+.|++++++.. ...|..+..+++|+.+++++
T Consensus 252 -~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 252 -KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp -CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred -cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 45578888888899999999888 4555543222 245677777776543 23455566677777777776
Q ss_pred CC
Q 046587 656 CR 657 (703)
Q Consensus 656 c~ 657 (703)
|.
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 63
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.1e-20 Score=192.58 Aligned_cols=284 Identities=14% Similarity=0.127 Sum_probs=182.5
Q ss_pred cceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeecccccCCCcccCCCcc
Q 046587 375 IKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSL 453 (703)
Q Consensus 375 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L 453 (703)
++.++++++....+|..+ .++++.|++++|......+ .++.+++|++|++++|......+..+. .+++|
T Consensus 33 l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~l~~L 102 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA------PLVKL 102 (330)
T ss_dssp TTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT------TCTTC
T ss_pred CeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc------CCCCC
Confidence 445555555555555443 2456666666665544333 455666666666665543222222222 25556
Q ss_pred ceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCccccccccc
Q 046587 454 EILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDD 533 (703)
Q Consensus 454 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 533 (703)
+.|+++-+.+..+... .+++|++|++++|. +..++... +.++++|+.++++
T Consensus 103 ~~L~Ls~n~l~~l~~~---~~~~L~~L~l~~n~-----------------l~~~~~~~---------~~~l~~L~~L~l~ 153 (330)
T 1xku_A 103 ERLYLSKNQLKELPEK---MPKTLQELRVHENE-----------------ITKVRKSV---------FNGLNQMIVVELG 153 (330)
T ss_dssp CEEECCSSCCSBCCSS---CCTTCCEEECCSSC-----------------CCBBCHHH---------HTTCTTCCEEECC
T ss_pred CEEECCCCcCCccChh---hcccccEEECCCCc-----------------ccccCHhH---------hcCCccccEEECC
Confidence 6655544444433222 23678888888775 22222111 1223344444444
Q ss_pred ccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCC
Q 046587 534 EEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLV 613 (703)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~ 613 (703)
.+........+..+..+++|++|++++|. ++.+|... +++|++|++++|......|..+..+++|++|++++|. +.
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 229 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-IS 229 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CC
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-Cc
Confidence 44433221222356667789999999985 55677654 3789999999997655557889999999999999985 44
Q ss_pred ccCCC--CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCC--------CCCcCeEEEecCCCCc
Q 046587 614 SFPER--GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGF--------PTSLTSLRIGDFKMYK 683 (703)
Q Consensus 614 ~~~~~--~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~i~~c~~l~ 683 (703)
.++.. ..+++|+.|++++| .++.+|.++..+++|++|++++| .++.++...+ .++|+.|++++|+...
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred eeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccc
Confidence 44432 33688999999996 57799999999999999999999 7888876644 3688999999998643
Q ss_pred -cccccCcCCCCceeeEEecC
Q 046587 684 -TLVQWGLHRLTSLGRLYIVD 703 (703)
Q Consensus 684 -~~~~~~l~~l~~L~~L~l~~ 703 (703)
.++...+..+++++.+++++
T Consensus 308 ~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 308 WEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp GGSCGGGGTTCCCGGGEEC--
T ss_pred cccCccccccccceeEEEecc
Confidence 34445689999999999874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=7.6e-21 Score=193.96 Aligned_cols=284 Identities=15% Similarity=0.128 Sum_probs=201.8
Q ss_pred CcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeecccccCCCcccCCCc
Q 046587 374 CIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPS 452 (703)
Q Consensus 374 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~ 452 (703)
.++.++++++....+|..+ .++++.|++++|......+ .++.+++|++|++++|..-...+..+. .+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS------PLRK 103 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST------TCTT
T ss_pred cCCEEECCCCCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh------CcCC
Confidence 4677778888777888765 3688888988888765544 588888899999988764333233332 3788
Q ss_pred cceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccc
Q 046587 453 LEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFD 532 (703)
Q Consensus 453 L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 532 (703)
|+.|+++-+.+..+... .+++|++|++++|. +..++... +.++++|+.+++
T Consensus 104 L~~L~L~~n~l~~l~~~---~~~~L~~L~l~~n~-----------------i~~~~~~~---------~~~l~~L~~L~l 154 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPN---LPSSLVELRIHDNR-----------------IRKVPKGV---------FSGLRNMNCIEM 154 (332)
T ss_dssp CCEEECCSSCCCSCCSS---CCTTCCEEECCSSC-----------------CCCCCSGG---------GSSCSSCCEEEC
T ss_pred CCEEECCCCcCCccCcc---ccccCCEEECCCCc-----------------cCccCHhH---------hCCCccCCEEEC
Confidence 88877766655544322 23789999999886 22222211 223445555555
Q ss_pred cccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCC
Q 046587 533 DEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSL 612 (703)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l 612 (703)
+.|.+......+..+..+ +|++|++++|. ++.+|... +++|++|++++|......+..+..+++|++|++++|. +
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l 229 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-I 229 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-C
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-C
Confidence 555544322222345555 79999999985 55677654 3789999999996655556789999999999999984 5
Q ss_pred CccCC--CCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCC--------CCCcCeEEEecCCCC
Q 046587 613 VSFPE--RGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGF--------PTSLTSLRIGDFKMY 682 (703)
Q Consensus 613 ~~~~~--~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~i~~c~~l 682 (703)
..++. ...+++|+.|++++| .++.+|..+..+++|+.|++++| .++.++...+ .++|+.|++++|+..
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCccc
Confidence 55543 234689999999996 57799999999999999999999 7888876533 367899999999865
Q ss_pred c-cccccCcCCCCceeeEEecC
Q 046587 683 K-TLVQWGLHRLTSLGRLYIVD 703 (703)
Q Consensus 683 ~-~~~~~~l~~l~~L~~L~l~~ 703 (703)
. .+++..+..+++|+.+++++
T Consensus 308 ~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 308 YWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp GGGSCGGGGTTBCCSTTEEC--
T ss_pred ccccCcccccccchhhhhhccc
Confidence 2 45555689999999999874
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=5.3e-22 Score=200.15 Aligned_cols=89 Identities=21% Similarity=0.350 Sum_probs=67.0
Q ss_pred CcccEEecCCCCCC---ccCccccCCCcCceEeccC-CCCc-cccccccccccCcEEecCCCCCCcccCccccCCCcccE
Q 046587 191 RRLRMLSLQGYCIG---ELPMSFEDLRLLRLLNLAD-TDIR-SLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRH 265 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~---~lp~~i~~l~~L~~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 265 (703)
.+++.|+++++.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46888888888876 5788888888888888884 7666 67778888888888888887444477777888888888
Q ss_pred EeecCccccccCCc
Q 046587 266 LDIRGAKLLKEMPF 279 (703)
Q Consensus 266 L~l~~~~~~~~~p~ 279 (703)
|++++|.....+|.
T Consensus 130 L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 130 LDFSYNALSGTLPP 143 (313)
T ss_dssp EECCSSEEESCCCG
T ss_pred EeCCCCccCCcCCh
Confidence 88887754434443
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=3.4e-19 Score=194.45 Aligned_cols=257 Identities=23% Similarity=0.232 Sum_probs=172.5
Q ss_pred CcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecC
Q 046587 191 RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRG 270 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 270 (703)
..+++|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 458999999999999998776 799999999999999987 6789999999998 5778887 778999999998
Q ss_pred ccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEcc
Q 046587 271 AKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWG 350 (703)
Q Consensus 271 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 350 (703)
|. +..+|. .++
T Consensus 111 N~-l~~l~~---~l~----------------------------------------------------------------- 121 (622)
T 3g06_A 111 NP-LTHLPA---LPS----------------------------------------------------------------- 121 (622)
T ss_dssp CC-CCCCCC---CCT-----------------------------------------------------------------
T ss_pred Cc-CCCCCC---CCC-----------------------------------------------------------------
Confidence 84 333332 122
Q ss_pred CCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecc
Q 046587 351 SQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKG 430 (703)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~ 430 (703)
+|+.|++++|....+|.. +++|++|++++|.... +|. .+++|+.|++++
T Consensus 122 -----------------------~L~~L~L~~N~l~~lp~~-----l~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L~~ 170 (622)
T 3g06_A 122 -----------------------GLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLAS-LPA--LPSELCKLWAYN 170 (622)
T ss_dssp -----------------------TCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCS
T ss_pred -----------------------CcCEEECCCCCCCcCCCC-----CCCCCEEECcCCcCCC-cCC--ccCCCCEEECCC
Confidence 233333344444444432 3567777777665532 332 235666666665
Q ss_pred cccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCcccccccc
Q 046587 431 LKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARR 510 (703)
Q Consensus 431 ~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~ 510 (703)
|.. . .+|..+++|+.|++++|. +..++.
T Consensus 171 N~l------------------------------~----~l~~~~~~L~~L~Ls~N~-----------------l~~l~~- 198 (622)
T 3g06_A 171 NQL------------------------------T----SLPMLPSGLQELSVSDNQ-----------------LASLPT- 198 (622)
T ss_dssp SCC------------------------------S----CCCCCCTTCCEEECCSSC-----------------CSCCCC-
T ss_pred CCC------------------------------C----CCcccCCCCcEEECCCCC-----------------CCCCCC-
Confidence 431 1 122335667777776664 111110
Q ss_pred CCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCccc
Q 046587 511 RLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELES 590 (703)
Q Consensus 511 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 590 (703)
. .++|+.|++++| .++.+|. .+++|++|++++| .++.
T Consensus 199 -----------------------------------~---~~~L~~L~L~~N-~l~~l~~---~~~~L~~L~Ls~N-~L~~ 235 (622)
T 3g06_A 199 -----------------------------------L---PSELYKLWAYNN-RLTSLPA---LPSGLKELIVSGN-RLTS 235 (622)
T ss_dssp -----------------------------------C---CTTCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CCSC
T ss_pred -----------------------------------c---cchhhEEECcCC-cccccCC---CCCCCCEEEccCC-ccCc
Confidence 1 123666777666 3444553 2467888888877 4556
Q ss_pred ccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCC
Q 046587 591 ILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRN 658 (703)
Q Consensus 591 ~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 658 (703)
+| ..+++|+.|++++| .+..+|. .+++|+.|++++| .++.+|..+.++++|+.|++++|+-
T Consensus 236 lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 236 LP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence 66 45678888888887 5667776 6778888888885 5668888888888999999998853
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=8e-20 Score=185.28 Aligned_cols=228 Identities=21% Similarity=0.375 Sum_probs=150.4
Q ss_pred CCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeecccccCCCcccCC
Q 046587 372 HKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPF 450 (703)
Q Consensus 372 ~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f 450 (703)
...++.|++.++....+|..++. +++|++|++++|... .+| .++.+++|++|++++|.. +.++..+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l--------- 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFR--LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASI--------- 146 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGG--GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-CCCCGGG---------
T ss_pred ccceeEEEccCCCchhcChhhhh--CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-ccCcHHH---------
Confidence 57889999999999999988876 899999999999886 555 588899999999988752 2332211
Q ss_pred CccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccc
Q 046587 451 PSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRL 530 (703)
Q Consensus 451 ~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l 530 (703)
..+++|+.|++++|..+. .+|..+....+.+
T Consensus 147 ---------------------~~l~~L~~L~L~~n~~~~---------------------~~p~~~~~~~~~~------- 177 (328)
T 4fcg_A 147 ---------------------ASLNRLRELSIRACPELT---------------------ELPEPLASTDASG------- 177 (328)
T ss_dssp ---------------------GGCTTCCEEEEEEETTCC---------------------CCCSCSEEEC-CC-------
T ss_pred ---------------------hcCcCCCEEECCCCCCcc---------------------ccChhHhhccchh-------
Confidence 236778888888876432 1222221111100
Q ss_pred cccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCC
Q 046587 531 FDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCP 610 (703)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~ 610 (703)
.+..+++|++|++++|. ++.+|..+..+++|++|++++|. +..+|..+..+++|++|++++|.
T Consensus 178 ---------------~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 178 ---------------EHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp ---------------CEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCT
T ss_pred ---------------hhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCc
Confidence 22334447777777763 33666666666777777777763 34566666677777777777776
Q ss_pred CCCccCCC-CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCCCcCeEEEec
Q 046587 611 SLVSFPER-GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPTSLTSLRIGD 678 (703)
Q Consensus 611 ~l~~~~~~-~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~ 678 (703)
....+|.. +.+++|+.|++++|+.++.+|..+.++++|++|++++|+.++.+|.. +.+++|+.+++..
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 66666542 33566777777777777777776777777777777777666766654 3356666666654
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=3.5e-22 Score=221.48 Aligned_cols=107 Identities=16% Similarity=0.053 Sum_probs=51.7
Q ss_pred cccccEEEEec---CCCCcccc------ccccccCCccEEEeecCcC-cc-ccccc-CCCCCCCcEEEecCCCCCC-ccC
Q 046587 550 PVMLQHLSIEN---CPELTSLS------SGVQFLEALEFLEIRDCPE-LE-SILDG-LPNLKCLQSIYIWKCPSLV-SFP 616 (703)
Q Consensus 550 ~~~L~~L~l~~---~~~l~~l~------~~~~~~~~L~~L~l~~c~~-l~-~~p~~-~~~l~~L~~L~l~~c~~l~-~~~ 616 (703)
+++|++|++++ |..++..| ..+..+++|+.|++++|.. +. ..+.. ...+++|++|++++|..-. .++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 34467777763 33444321 1233456677777765542 11 11111 1235666677766664211 111
Q ss_pred C-CCCCCCccEEEeccCCCCcc--cccccCCCCCcceEeeccCC
Q 046587 617 E-RGLPNTISRVGIGECDKLEA--LPNDLHKINSLRYLSIQLCR 657 (703)
Q Consensus 617 ~-~~~~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~ 657 (703)
. ...+++|+.|++++|+ ++. ++..+..+++|++|++++|+
T Consensus 482 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 1 1124566666666665 321 33334456666666666663
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=188.90 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=37.6
Q ss_pred ccEEEEecCCCCc----cccccccccCCccEEEeecCcCcccccccC-CCCCCCcEEEecCCCC
Q 046587 553 LQHLSIENCPELT----SLSSGVQFLEALEFLEIRDCPELESILDGL-PNLKCLQSIYIWKCPS 611 (703)
Q Consensus 553 L~~L~l~~~~~l~----~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~-~~l~~L~~L~l~~c~~ 611 (703)
++.++++++.... .+|..+..+++|++|++++| .++.+|..+ ..+++|++|++++|+.
T Consensus 251 l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 5666666654322 34555556777888888877 445676663 6778888888877753
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=5.4e-21 Score=192.80 Aligned_cols=226 Identities=18% Similarity=0.239 Sum_probs=104.5
Q ss_pred hhcCCCcccEEecCC-CCC-CccCccccCCCcCceEeccCCCCc-cccccccccccCcEEecCCCCCCcccCccccCCCc
Q 046587 186 LLPKFRRLRMLSLQG-YCI-GELPMSFEDLRLLRLLNLADTDIR-SLPESTCTLLNLEILILRNCSRLIKLPPKMRNLIN 262 (703)
Q Consensus 186 ~~~~l~~Lr~L~L~~-~~l-~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 262 (703)
.+..+++|++|++++ |.+ ..+|..|+++++|++|++++|.++ .+|..++++++|++|++++|.....+|..++++++
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 344555555555553 443 244555555555555555555554 45555555555555555554332345555555555
Q ss_pred ccEEeecCccccccCCccCCCCC-CCcccCeeEeecC-CCCCChhhhhhhhccCCceEEeCccccCChhchhhhhccccc
Q 046587 263 LRHLDIRGAKLLKEMPFGMKELK-NLQTLSNFIVGKG-ETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKH 340 (703)
Q Consensus 263 L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~-~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~ 340 (703)
|++|++++|.....+|..+++++ +|++|++..+... ..+..+..++ |+.+ .+.. +......+..+..++
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L----~Ls~----N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV----DLSR----NMLEGDASVLFGSDK 221 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE----ECCS----SEEEECCGGGCCTTS
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE----ECcC----CcccCcCCHHHhcCC
Confidence 55555555544444555555554 5555544333221 1111111111 1111 0000 001111223344455
Q ss_pred ccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCC-CCCcccCCCCCCCccEEEEeccCCCCcCCCCCC
Q 046587 341 NLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGA-RFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGL 419 (703)
Q Consensus 341 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~ 419 (703)
+|+.|+++++... .....+..+++|+.|++++|... .+|.++.. +++|+.|++++|...+.+|..+.
T Consensus 222 ~L~~L~L~~N~l~----------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 222 NTQKIHLAKNSLA----------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp CCSEEECCSSEEC----------CBGGGCCCCTTCCEEECCSSCCEECCCGGGGG--CTTCCEEECCSSEEEEECCCSTT
T ss_pred CCCEEECCCCcee----------eecCcccccCCCCEEECcCCcccCcCChHHhc--CcCCCEEECcCCcccccCCCCcc
Confidence 5555555443310 01111334455666666655554 45555543 55566666666555555555555
Q ss_pred cCccceeeecccc
Q 046587 420 LSSLKHLAVKGLK 432 (703)
Q Consensus 420 l~~L~~L~l~~~~ 432 (703)
+++|+.|++.+|.
T Consensus 290 l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 290 LQRFDVSAYANNK 302 (313)
T ss_dssp GGGSCGGGTCSSS
T ss_pred ccccChHHhcCCC
Confidence 5556666555554
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.4e-22 Score=224.77 Aligned_cols=204 Identities=12% Similarity=0.058 Sum_probs=105.8
Q ss_pred hhcCCCcccEEecCCCCCCcc-CccccCC--CcCceEeccCCC-Cc--cccccccccccCcEEecCCCCCCcc----cCc
Q 046587 186 LLPKFRRLRMLSLQGYCIGEL-PMSFEDL--RLLRLLNLADTD-IR--SLPESTCTLLNLEILILRNCSRLIK----LPP 255 (703)
Q Consensus 186 ~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l--~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~ 255 (703)
.+..+++|++|+|++|.++.. +..+... .+|++|++++|. +. .++..+.++++|++|+|++|..... ++.
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred HHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 344667777777777765432 3334332 337777777764 22 2333344667777777777632111 222
Q ss_pred cccCCCcccEEeecCcccc----ccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhch
Q 046587 256 KMRNLINLRHLDIRGAKLL----KEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNA 331 (703)
Q Consensus 256 ~i~~L~~L~~L~l~~~~~~----~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~ 331 (703)
.+..+++|++|++++|... ..++..+.++++|++|++..+... .
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--------------------------------~ 234 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--------------------------------E 234 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--------------------------------G
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--------------------------------H
Confidence 3456677777777766532 223333445556665554322111 0
Q ss_pred hhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCC
Q 046587 332 REATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNC 411 (703)
Q Consensus 332 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~ 411 (703)
....+..+++|+.|.++..... .........+..+++|+.+.+.+.....+|..+.. +++|++|++++|...
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~--~~~L~~L~Ls~~~l~ 306 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNED------IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF--AAQIRKLDLLYALLE 306 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCC------TTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGG--GGGCCEEEETTCCCC
T ss_pred HHHHHhhhhHHHhhcccccccc------cchHHHHHHhhccccccccCccccchhHHHHHHhh--cCCCcEEecCCCcCC
Confidence 1223444555666665421100 00011223444556677777766655556665554 667777777777632
Q ss_pred CcCC--CCCCcCccceeeec
Q 046587 412 VSLP--SLGLLSSLKHLAVK 429 (703)
Q Consensus 412 ~~l~--~l~~l~~L~~L~l~ 429 (703)
.... .+..+++|++|++.
T Consensus 307 ~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 307 TEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHHHHhCcCCCEEecc
Confidence 2111 24566777777776
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=5.6e-19 Score=181.78 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=64.9
Q ss_pred CCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCccc-CccccCCCcccEE
Q 046587 189 KFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKL-PPKMRNLINLRHL 266 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 266 (703)
.++...+.+.+++.++.+|..+. .+|++|++++|.++.+|. .++++++|++|++++| .+..+ |..++++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEE
Confidence 34556678888888999988765 489999999999988876 6888999999999987 45555 4568888999999
Q ss_pred eecCcc
Q 046587 267 DIRGAK 272 (703)
Q Consensus 267 ~l~~~~ 272 (703)
++++|.
T Consensus 106 ~Ls~n~ 111 (353)
T 2z80_A 106 DLSYNY 111 (353)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 988885
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=1.5e-22 Score=217.15 Aligned_cols=231 Identities=15% Similarity=0.158 Sum_probs=117.0
Q ss_pred ceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCC-----ccCccccCCCcCceEeccCCCCccc-cccc-cc
Q 046587 163 HLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIG-----ELPMSFEDLRLLRLLNLADTDIRSL-PEST-CT 235 (703)
Q Consensus 163 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i-~~ 235 (703)
+++.|.+.++. +........+..+++|++|++++|.++ .++..+..+++|++|++++|.+... +..+ ..
T Consensus 4 ~l~~L~Ls~~~----l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 4 DIQSLDIQCEE----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEESCC----CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred cceehhhhhcc----cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 45555554433 223333444566677777777777765 3455666667777777777776532 2222 23
Q ss_pred cc----cCcEEecCCCCCCc-----ccCccccCCCcccEEeecCccccccCCcc-----CCCCCCCcccCeeEeecCCCC
Q 046587 236 LL----NLEILILRNCSRLI-----KLPPKMRNLINLRHLDIRGAKLLKEMPFG-----MKELKNLQTLSNFIVGKGETA 301 (703)
Q Consensus 236 L~----~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~~~~~~~~~~~ 301 (703)
+. +|++|++++|. +. .+|..+.++++|++|++++|......+.. ....++|++|++..+.....
T Consensus 80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~- 157 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA- 157 (461)
T ss_dssp TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-
T ss_pred HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-
Confidence 44 57777777763 33 34566677777777777777533221211 11234555555432211110
Q ss_pred CChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCC-CCCCcceEEE
Q 046587 302 SGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQ-PHKCIKKVAI 380 (703)
Q Consensus 302 ~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l 380 (703)
........+..+++|+.|+++++.. .......+...+. ..++|+.|++
T Consensus 158 --------------------------~~~~l~~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 158 --------------------------SCEPLASVLRAKPDFKELTVSNNDI-----NEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp --------------------------GHHHHHHHHHHCTTCCEEECCSSBC-----HHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred --------------------------HHHHHHHHHhhCCCCCEEECcCCCc-----chHHHHHHHHHHhcCCCCceEEEc
Confidence 0011222344455666666654330 0000111111111 3446777777
Q ss_pred eccCCCC-----CCcccCCCCCCCccEEEEeccCCCCcC-----C-CCCCcCccceeeecccc
Q 046587 381 RNYGGAR-----FPHWIGDPSFSKMKVLKLENCHNCVSL-----P-SLGLLSSLKHLAVKGLK 432 (703)
Q Consensus 381 ~~~~~~~-----~p~~~~~~~~~~L~~L~l~~~~~~~~l-----~-~l~~l~~L~~L~l~~~~ 432 (703)
+++.... ++.++.. +++|++|++++|...... + ....+++|++|++++|.
T Consensus 207 ~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVAS--KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHH--CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cCCCCcHHHHHHHHHHHHh--CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 7665544 3444443 567777777776543211 1 12346677777777663
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=9.3e-18 Score=183.12 Aligned_cols=115 Identities=24% Similarity=0.251 Sum_probs=54.7
Q ss_pred cccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEecc
Q 046587 552 MLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGE 631 (703)
Q Consensus 552 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 631 (703)
+|++|++++|. ++.+|. .+++|+.|++++| .++.+|.. +++|+.|++++| .+..+| ..+++|+.|++++
T Consensus 182 ~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 182 GLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLP--VLPSELKELMVSG 250 (622)
T ss_dssp TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCC--CCCTTCCEEECCS
T ss_pred CCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCCC---CCCCCEEEccCC-ccCcCC--CCCCcCcEEECCC
Confidence 35555555553 333333 2244555555554 23344432 245555555555 344444 2345555555555
Q ss_pred CCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCCCcCeEEEecCCCC
Q 046587 632 CDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPTSLTSLRIGDFKMY 682 (703)
Q Consensus 632 c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l 682 (703)
| .++.+|. .+++|+.|++++| .++.+|.. ..+++|+.|++++|+..
T Consensus 251 N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 251 N-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp S-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred C-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 3 3444544 3455555555555 44555433 22455555555555433
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=7.1e-18 Score=179.65 Aligned_cols=240 Identities=20% Similarity=0.204 Sum_probs=141.7
Q ss_pred ccEEecCCCCCCccCccccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccC-ccccCCCcccEEeecC
Q 046587 193 LRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIRG 270 (703)
Q Consensus 193 Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 270 (703)
.+.++.++..++.+|..+. .+|++|+|++|.++.+ |..++++++|++|+|++| .+..++ ..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 3556666666777776554 5777777777777755 456777777777777776 344443 5577777777777777
Q ss_pred ccccccCCcc-CCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587 271 AKLLKEMPFG-MKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDW 349 (703)
Q Consensus 271 ~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 349 (703)
|. +..+|.. ++.+++|++|++
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L~L--------------------------------------------------------- 154 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLRELWL--------------------------------------------------------- 154 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEEEC---------------------------------------------------------
T ss_pred Cc-CCccChhhhcccCCCCEEEC---------------------------------------------------------
Confidence 74 3333322 344444443332
Q ss_pred cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCc-ccCCCCCCCccEEEEeccCCCCcCC--CCCCcCcccee
Q 046587 350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPH-WIGDPSFSKMKVLKLENCHNCVSLP--SLGLLSSLKHL 426 (703)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L 426 (703)
++|....+|. .+. .+++|+.|++++|...+.++ .+..+++|++|
T Consensus 155 -------------------------------~~N~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 155 -------------------------------RNNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp -------------------------------CSCCCCEECTTTTT--TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred -------------------------------CCCCcceeCHhHHh--cCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 1222222221 111 25666777776665555544 36667777777
Q ss_pred eecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCcccc
Q 046587 427 AVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTF 506 (703)
Q Consensus 427 ~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~ 506 (703)
++++|.. +.+ + . ...+++|+.|++++|.
T Consensus 202 ~L~~n~l-~~~-------------~-------------~-----~~~l~~L~~L~Ls~N~-------------------- 229 (452)
T 3zyi_A 202 NLGMCNI-KDM-------------P-------------N-----LTPLVGLEELEMSGNH-------------------- 229 (452)
T ss_dssp ECTTSCC-SSC-------------C-------------C-----CTTCTTCCEEECTTSC--------------------
T ss_pred ECCCCcc-ccc-------------c-------------c-----ccccccccEEECcCCc--------------------
Confidence 7766531 100 0 0 0135566666666654
Q ss_pred ccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCc
Q 046587 507 IARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCP 586 (703)
Q Consensus 507 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 586 (703)
+....+ ..+..+++|++|++++|......+..+..+++|+.|+|++|.
T Consensus 230 ------------------------------l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 230 ------------------------------FPEIRP--GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp ------------------------------CSEECG--GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ------------------------------CcccCc--ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 111000 144555668888888886655556667778888888988885
Q ss_pred CcccccccCCCCCCCcEEEecCCC
Q 046587 587 ELESILDGLPNLKCLQSIYIWKCP 610 (703)
Q Consensus 587 ~l~~~p~~~~~l~~L~~L~l~~c~ 610 (703)
.....+..+..+++|+.|++++|+
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCccChHHhccccCCCEEEccCCC
Confidence 443333456778888888888875
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=4.8e-23 Score=221.02 Aligned_cols=387 Identities=19% Similarity=0.139 Sum_probs=204.6
Q ss_pred CcccEEecCCCCCCccC--ccccCCCcCceEeccCCCCc-----cccccccccccCcEEecCCCCCCcccCccc-cCCC-
Q 046587 191 RRLRMLSLQGYCIGELP--MSFEDLRLLRLLNLADTDIR-----SLPESTCTLLNLEILILRNCSRLIKLPPKM-RNLI- 261 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp--~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~- 261 (703)
+.|++|+++++.++..+ ..+..+++|++|++++|.++ .+|..+..+++|++|++++|......+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999987653 23678999999999999988 567788899999999999984322223333 3455
Q ss_pred ---cccEEeecCccccc----cCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhh
Q 046587 262 ---NLRHLDIRGAKLLK----EMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREA 334 (703)
Q Consensus 262 ---~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~ 334 (703)
+|++|++++|.... .+|..+..+++|++|++..+..... ....+ ...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-----~~~~l---------------------~~~ 136 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA-----GLQLL---------------------CEG 136 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH-----HHHHH---------------------HHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH-----HHHHH---------------------HHH
Confidence 79999999997552 4567788888888887644321110 00000 000
Q ss_pred hcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCC-CcccCC---CCCCCccEEEEeccCC
Q 046587 335 TVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARF-PHWIGD---PSFSKMKVLKLENCHN 410 (703)
Q Consensus 335 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~---~~~~~L~~L~l~~~~~ 410 (703)
......+|+.|+++++. ........+...+..+++|+.|+++++..... +..+.. ...++|++|++++|..
T Consensus 137 l~~~~~~L~~L~L~~n~-----l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCS-----LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HTSTTCCCCEEECTTSC-----CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HhcCCCcceEEECCCCC-----CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 01123356666664432 11111112223333344555555555433211 000000 0123445555554443
Q ss_pred CCc----CC-CCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecC
Q 046587 411 CVS----LP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKC 485 (703)
Q Consensus 411 ~~~----l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~ 485 (703)
... ++ .+..+++|++|++++|. ++... ...+...+...+++|+.|++++|
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~------------------------~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSNK-LGDVG------------------------MAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHH------------------------HHHHHHHHTSTTCCCCEEECTTS
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCCc-CChHH------------------------HHHHHHHHhcCCCCceEEECcCC
Confidence 221 11 22234444444444432 11000 00000000112344555555544
Q ss_pred CCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCc
Q 046587 486 KKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELT 565 (703)
Q Consensus 486 ~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 565 (703)
. +....... .+..+..+++|++|++++|....
T Consensus 267 ~----------------------------------------l~~~~~~~--------l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 267 G----------------------------------------ITAKGCGD--------LCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp C----------------------------------------CCHHHHHH--------HHHHHHHCTTCCEEECTTCCCHH
T ss_pred C----------------------------------------CCHHHHHH--------HHHHHhhCCCcceEECCCCCCch
Confidence 2 11100000 00012223447777777774322
Q ss_pred c----ccccc-cccCCccEEEeecCcCccc----ccccCCCCCCCcEEEecCCCCCCccC-----C--CCCCCCccEEEe
Q 046587 566 S----LSSGV-QFLEALEFLEIRDCPELES----ILDGLPNLKCLQSIYIWKCPSLVSFP-----E--RGLPNTISRVGI 629 (703)
Q Consensus 566 ~----l~~~~-~~~~~L~~L~l~~c~~l~~----~p~~~~~l~~L~~L~l~~c~~l~~~~-----~--~~~~~~L~~L~l 629 (703)
. +.... ...++|++|++++|..... ++..+..+++|++|++++|. +.... . ....++|+.|++
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEEC
Confidence 1 11111 1225788888888864432 45566677888888888883 32211 0 011457899999
Q ss_pred ccCCCCc----ccccccCCCCCcceEeeccCCCcccCCCC-------CCCCCcCeEEEecCCCCc
Q 046587 630 GECDKLE----ALPNDLHKINSLRYLSIQLCRNLVSFPEE-------GFPTSLTSLRIGDFKMYK 683 (703)
Q Consensus 630 ~~c~~l~----~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-------~~~~~L~~L~i~~c~~l~ 683 (703)
++|..-. .+|..+..+++|++|++++| .++..... ....+|+.|++.++..-.
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 8875332 67888888899999999999 45432100 123478888887765443
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=9.6e-18 Score=178.62 Aligned_cols=239 Identities=21% Similarity=0.180 Sum_probs=137.3
Q ss_pred ceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeec-ccccCCCcccCCCcc
Q 046587 376 KKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIE-SEVYGEGFSMPFPSL 453 (703)
Q Consensus 376 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~f~~L 453 (703)
..+...+.....+|..+ .++++.|++++|......+ .++.+++|++|++++|.. +.++ ..|
T Consensus 57 ~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~------------ 119 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAF------------ 119 (452)
T ss_dssp CEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTT------------
T ss_pred cEEEECCCCcCccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc-CCcChhhc------------
Confidence 44555566667777655 3688889998888766544 578888889998888753 2222 111
Q ss_pred ceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCccccccccc
Q 046587 454 EILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDD 533 (703)
Q Consensus 454 ~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 533 (703)
..+++|+.|++++|. +..++.+. +.++++|+.|+++
T Consensus 120 ------------------~~l~~L~~L~L~~n~-----------------l~~~~~~~---------~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 120 ------------------NGLASLNTLELFDNW-----------------LTVIPSGA---------FEYLSKLRELWLR 155 (452)
T ss_dssp ------------------TTCTTCCEEECCSSC-----------------CSBCCTTT---------SSSCTTCCEEECC
T ss_pred ------------------cCcccCCEEECCCCc-----------------CCccChhh---------hcccCCCCEEECC
Confidence 124455555555553 11111110 1112222222222
Q ss_pred ccccCCCCCCCCCCCCcccccEEEEecCCCCccccc-cccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCC
Q 046587 534 EEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSS-GVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSL 612 (703)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l 612 (703)
+|.+....+. .+..+++|++|++++|..++.++. .+..+++|++|++++| .++.+| .+..+++|++|++++|...
T Consensus 156 ~N~l~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 156 NNPIESIPSY--AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp SCCCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCcceeCHh--HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc-cccccccccEEECcCCcCc
Confidence 2222211111 445556677777777766666654 3456677777777776 344554 4667777777777777433
Q ss_pred CccCC-CCCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCC--CCCcCeEEEecCC
Q 046587 613 VSFPE-RGLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGF--PTSLTSLRIGDFK 680 (703)
Q Consensus 613 ~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 680 (703)
...+. ...+++|+.|++++|......|..+.++++|+.|++++| .++.++...+ +++|+.|++++|+
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 22222 123566777777775543344556677777777777777 6667665533 5677777777765
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.1e-17 Score=177.44 Aligned_cols=240 Identities=17% Similarity=0.167 Sum_probs=156.9
Q ss_pred cceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeec-ccccCCCcccCCCc
Q 046587 375 IKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIE-SEVYGEGFSMPFPS 452 (703)
Q Consensus 375 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~f~~ 452 (703)
...+...+.....+|..+ .++++.|++++|......+ .++.+++|++|++++|.. +.+. ..|.+ +++
T Consensus 45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~------l~~ 113 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNG------LAN 113 (440)
T ss_dssp SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTT------CSS
T ss_pred CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccC------Ccc
Confidence 345666666777888766 3689999999998766554 688899999999998753 3332 12211 344
Q ss_pred cceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccc
Q 046587 453 LEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFD 532 (703)
Q Consensus 453 L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 532 (703)
|+.|+++-+.+..+.......+++|+.|++++|
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N----------------------------------------------- 146 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN----------------------------------------------- 146 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-----------------------------------------------
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCC-----------------------------------------------
Confidence 444433333333222111222333444443333
Q ss_pred cccccCCCCCCCCCCCCcccccEEEEecCCCCccccc-cccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCC
Q 046587 533 DEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSS-GVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPS 611 (703)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~ 611 (703)
.+....+. .+..+++|++|++++|..+..++. .+..+++|++|++++| .++.+| .+..+++|++|++++| .
T Consensus 147 ---~i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~ 218 (440)
T 3zyj_A 147 ---PIESIPSY--AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-H 218 (440)
T ss_dssp ---CCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-C
T ss_pred ---cccccCHH--HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-c
Confidence 32222211 455667788999988878877765 4567888999999888 555676 4778888999999888 4
Q ss_pred CCccCCC--CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCC--CCCcCeEEEecCCC
Q 046587 612 LVSFPER--GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGF--PTSLTSLRIGDFKM 681 (703)
Q Consensus 612 l~~~~~~--~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 681 (703)
+..++.. ..+++|+.|++++|..-...|..+.++++|+.|++++| .++.++...+ +++|+.|++++||.
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 4444332 23678899999886544444566788888999999988 7888877643 67888999888873
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=6.2e-18 Score=179.44 Aligned_cols=240 Identities=22% Similarity=0.229 Sum_probs=142.4
Q ss_pred ccEEecCCCCCCccCccccCCCcCceEeccCCCCcccc-ccccccccCcEEecCCCCCCcccC-ccccCCCcccEEeecC
Q 046587 193 LRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLP-ESTCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIRG 270 (703)
Q Consensus 193 Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 270 (703)
.+.++.++..++.+|..+. .++++|+|++|.++.++ ..++++++|++|+|++| .+..++ ..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 3456666667777776654 57777777777777654 55677777777777776 344444 4567777777777777
Q ss_pred ccccccCCc-cCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587 271 AKLLKEMPF-GMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDW 349 (703)
Q Consensus 271 ~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 349 (703)
|. +..+|. .+..+++|++|++
T Consensus 122 n~-l~~~~~~~~~~l~~L~~L~L--------------------------------------------------------- 143 (440)
T 3zyj_A 122 NR-LTTIPNGAFVYLSKLKELWL--------------------------------------------------------- 143 (440)
T ss_dssp SC-CSSCCTTTSCSCSSCCEEEC---------------------------------------------------------
T ss_pred Cc-CCeeCHhHhhccccCceeeC---------------------------------------------------------
Confidence 74 333332 2444444444432
Q ss_pred cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCc-ccCCCCCCCccEEEEeccCCCCcCC--CCCCcCcccee
Q 046587 350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPH-WIGDPSFSKMKVLKLENCHNCVSLP--SLGLLSSLKHL 426 (703)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L 426 (703)
++|....+|. .+. .+++|+.|++++|.....++ .+..+++|++|
T Consensus 144 -------------------------------~~N~i~~~~~~~~~--~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 144 -------------------------------RNNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp -------------------------------CSCCCCEECTTTTT--TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred -------------------------------CCCcccccCHHHhh--hCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 1222222221 112 26677777777766555554 46777778888
Q ss_pred eecccccceeecccccCCCcccCCCccceeceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCcccc
Q 046587 427 AVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTF 506 (703)
Q Consensus 427 ~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~ 506 (703)
++++|.. +.+ | . ...+++|+.|++++|. +..
T Consensus 191 ~L~~n~l-~~~-------------~-------------~-----~~~l~~L~~L~Ls~N~-----------------l~~ 221 (440)
T 3zyj_A 191 NLAMCNL-REI-------------P-------------N-----LTPLIKLDELDLSGNH-----------------LSA 221 (440)
T ss_dssp ECTTSCC-SSC-------------C-------------C-----CTTCSSCCEEECTTSC-----------------CCE
T ss_pred cCCCCcC-ccc-------------c-------------c-----cCCCcccCEEECCCCc-----------------cCc
Confidence 7777641 111 1 0 1235667777776664 111
Q ss_pred ccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCcccccEEEEecCCCCccccccccccCCccEEEeecCc
Q 046587 507 IARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCP 586 (703)
Q Consensus 507 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 586 (703)
+ .+ ..+..+++|++|++++|......+..+..+++|++|+|++|.
T Consensus 222 ~---------------------------------~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 222 I---------------------------------RP--GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp E---------------------------------CT--TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred c---------------------------------Ch--hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 1 11 144555667888887776555545566677788888888874
Q ss_pred CcccccccCCCCCCCcEEEecCCC
Q 046587 587 ELESILDGLPNLKCLQSIYIWKCP 610 (703)
Q Consensus 587 ~l~~~p~~~~~l~~L~~L~l~~c~ 610 (703)
.....+..+..+++|+.|++++|+
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCccChhHhccccCCCEEEcCCCC
Confidence 443334456778888888888775
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.7e-19 Score=180.86 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=46.1
Q ss_pred hhhhcCCCcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCc
Q 046587 184 SDLLPKFRRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLIN 262 (703)
Q Consensus 184 ~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 262 (703)
...+..+++|++|++++|.+..++ ..|+.+++|++|++++|.++.+++ ++.+++|++|++++| .+..+| ..++
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~~ 100 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPS 100 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECTT
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CCCC
Confidence 344455556666666666665553 355666666666666666655443 556666666666665 333333 2255
Q ss_pred ccEEeecCc
Q 046587 263 LRHLDIRGA 271 (703)
Q Consensus 263 L~~L~l~~~ 271 (703)
|++|++++|
T Consensus 101 L~~L~l~~n 109 (317)
T 3o53_A 101 IETLHAANN 109 (317)
T ss_dssp CCEEECCSS
T ss_pred cCEEECCCC
Confidence 555555555
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.2e-18 Score=171.60 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=54.1
Q ss_pred cEEecCCCCCCccCccccCCCcCceEeccCCCCcccc-ccccccccCcEEecCCCCCCccc-CccccCCCcccEEeecCc
Q 046587 194 RMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLP-ESTCTLLNLEILILRNCSRLIKL-PPKMRNLINLRHLDIRGA 271 (703)
Q Consensus 194 r~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 271 (703)
++++.+++.++.+|..+ ..+|++|++++|.++.+| ..++++++|++|++++| .+..+ |..++++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777777777654 357788888888777666 35777778888888776 34444 566777778888887777
Q ss_pred c
Q 046587 272 K 272 (703)
Q Consensus 272 ~ 272 (703)
.
T Consensus 91 ~ 91 (285)
T 1ozn_A 91 A 91 (285)
T ss_dssp T
T ss_pred C
Confidence 4
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=3.5e-18 Score=172.14 Aligned_cols=100 Identities=26% Similarity=0.319 Sum_probs=55.8
Q ss_pred CcccEEecCCCCCCccCcc-ccCCCcCceEeccCCCCccc---cccccccccCcEEecCCCCCCcccCccccCCCcccEE
Q 046587 191 RRLRMLSLQGYCIGELPMS-FEDLRLLRLLNLADTDIRSL---PESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHL 266 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 266 (703)
+.|++|++++|.++.+|.. ++++++|++|++++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 3566666666666666543 45666666666666665533 444555666666666665 445555556666666666
Q ss_pred eecCccccccCC--ccCCCCCCCcccCe
Q 046587 267 DIRGAKLLKEMP--FGMKELKNLQTLSN 292 (703)
Q Consensus 267 ~l~~~~~~~~~p--~~i~~l~~L~~L~~ 292 (703)
++++|.. ..++ ..+..+++|++|++
T Consensus 107 ~l~~n~l-~~~~~~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 107 DFQHSNL-KQMSEFSVFLSLRNLIYLDI 133 (306)
T ss_dssp ECTTSEE-ESSTTTTTTTTCTTCCEEEC
T ss_pred ECCCCcc-cccccchhhhhccCCCEEEC
Confidence 6666642 2222 23555555555543
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=9.9e-21 Score=209.97 Aligned_cols=238 Identities=15% Similarity=0.072 Sum_probs=117.4
Q ss_pred cccCCCceeEeeeccCCCCccc----------chhhhhhhhcCCCcccEEecCCCCCCcc-Ccccc-CCCcCceEeccCC
Q 046587 157 VFNEIEHLRTFLPLHERRGYYI----------PRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFE-DLRLLRLLNLADT 224 (703)
Q Consensus 157 ~~~~~~~Lr~L~~~~~~~~~~~----------~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~-~l~~L~~L~L~~~ 224 (703)
.+..+++|+.|.+.++.....+ ...........+++|+.|++++|.+... +..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3456677888777654311100 0111223345667777788877765432 33343 5677777777777
Q ss_pred -CCcc--ccccccccccCcEEecCCCCCCcc-----cCccccCCCcccEEeecCcc--cc-ccCCccCCCCCCCcccCee
Q 046587 225 -DIRS--LPESTCTLLNLEILILRNCSRLIK-----LPPKMRNLINLRHLDIRGAK--LL-KEMPFGMKELKNLQTLSNF 293 (703)
Q Consensus 225 -~i~~--lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~--~~-~~~p~~i~~l~~L~~L~~~ 293 (703)
.++. ++..+.++++|++|++++|. +.. ++.....+++|++|++++|. .. ..++.-+.++++|++|++.
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 4543 44445567777777777764 222 22223366677777777764 00 0111112334556555542
Q ss_pred EeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCC
Q 046587 294 IVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHK 373 (703)
Q Consensus 294 ~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (703)
.+. .... ....+..+++|+.|.+..+.. ......-......+..++
T Consensus 220 ~~~------------------------------~~~~-l~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~l~~~l~~~~ 265 (594)
T 2p1m_B 220 RAV------------------------------PLEK-LATLLQRAPQLEELGTGGYTA---EVRPDVYSGLSVALSGCK 265 (594)
T ss_dssp TTS------------------------------CHHH-HHHHHHHCTTCSEEECSBCCC---CCCHHHHHHHHHHHHTCT
T ss_pred CCC------------------------------cHHH-HHHHHhcCCcceEcccccccC---ccchhhHHHHHHHHhcCC
Confidence 210 0111 233344555666666543220 011111122233445556
Q ss_pred CcceE-EEeccCCCCCCcccCCCCCCCccEEEEeccCCCCc-CC-CCCCcCccceeeeccc
Q 046587 374 CIKKV-AIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVS-LP-SLGLLSSLKHLAVKGL 431 (703)
Q Consensus 374 ~L~~L-~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~-l~-~l~~l~~L~~L~l~~~ 431 (703)
+|+.+ .+.+.....+|..+.. +++|++|++++|..... +. .+..+++|++|++.+|
T Consensus 266 ~L~~Ls~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 266 ELRCLSGFWDAVPAYLPAVYSV--CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TCCEEECCBTCCGGGGGGGHHH--HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CcccccCCcccchhhHHHHHHh--hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 66666 2333222233333322 56777777777763221 11 1345677777777665
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=4.6e-18 Score=171.24 Aligned_cols=224 Identities=17% Similarity=0.088 Sum_probs=158.8
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCcc---CccccCCCcCceEeccCCCCcccccccccccc
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGEL---PMSFEDLRLLRLLNLADTDIRSLPESTCTLLN 238 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 238 (703)
++++.|.+.++. ...++..+|.++++|++|++++|.+..+ |..+..+.+|++|++++|.++.+|..+.++++
T Consensus 28 ~~l~~L~L~~n~-----l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred CCCCEEECCCCc-----cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCC
Confidence 578888877664 2345556678899999999999988765 56777889999999999999999988999999
Q ss_pred CcEEecCCCCCCcccCc--cccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCc
Q 046587 239 LEILILRNCSRLIKLPP--KMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDE 316 (703)
Q Consensus 239 L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~ 316 (703)
|++|++++| .+..+|. .+.++++|++|++++|......|..++.+++|++|++..+....
T Consensus 103 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------- 164 (306)
T 2z66_A 103 LEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----------------- 164 (306)
T ss_dssp CCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-----------------
T ss_pred CCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-----------------
Confidence 999999997 5666653 68899999999999997666666668888888888764443221
Q ss_pred eEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCc-ccCCC
Q 046587 317 LCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPH-WIGDP 395 (703)
Q Consensus 317 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~ 395 (703)
...+..+..+++|+.|+++++.-. ......+..+++|+.|+++++....++. .+..
T Consensus 165 -------------~~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~- 221 (306)
T 2z66_A 165 -------------NFLPDIFTELRNLTFLDLSQCQLE---------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC- 221 (306)
T ss_dssp -------------GEECSCCTTCTTCCEEECTTSCCC---------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT-
T ss_pred -------------ccchhHHhhCcCCCEEECCCCCcC---------CcCHHHhcCCCCCCEEECCCCccCccChhhccC-
Confidence 011122344556666666543310 0112345556778888888887776655 3443
Q ss_pred CCCCccEEEEeccCCCCcCC-CCCCcC-ccceeeecccc
Q 046587 396 SFSKMKVLKLENCHNCVSLP-SLGLLS-SLKHLAVKGLK 432 (703)
Q Consensus 396 ~~~~L~~L~l~~~~~~~~l~-~l~~l~-~L~~L~l~~~~ 432 (703)
+++|+.|++++|...+..+ .+..++ +|++|++++|.
T Consensus 222 -l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 222 -LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred -cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 7888888888887766555 466664 78888888775
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=8e-19 Score=176.98 Aligned_cols=83 Identities=22% Similarity=0.231 Sum_probs=56.5
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCc--ccccccc-------ccccCcEEecCCCCCCcccCccc
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIR--SLPESTC-------TLLNLEILILRNCSRLIKLPPKM 257 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~l~~lp~~i 257 (703)
++..+.|+.|++++|.+ .+|..+... |++|++++|.++ .+|..+. ++++|++|++++|.....+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 44556777777777777 777666543 777777777775 4555554 67777777777764444666655
Q ss_pred --cCCCcccEEeecCcc
Q 046587 258 --RNLINLRHLDIRGAK 272 (703)
Q Consensus 258 --~~L~~L~~L~l~~~~ 272 (703)
+.+++|++|++++|.
T Consensus 116 ~~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVS 132 (312)
T ss_dssp SSCCSCCCSEEEEESCB
T ss_pred HHhcCCCccEEEccCCC
Confidence 677777777777774
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=2.5e-18 Score=184.04 Aligned_cols=147 Identities=9% Similarity=0.093 Sum_probs=108.8
Q ss_pred ccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCC-CCCCCcEEEecCCCCCCccCCCCCCCCccEEEe
Q 046587 551 VMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLP-NLKCLQSIYIWKCPSLVSFPERGLPNTISRVGI 629 (703)
Q Consensus 551 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 629 (703)
++|++|++++|......|..+..+++|++|++++|......|..+. .+++|+.|++++|. +..++....+++|+.|++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEEC
Confidence 4488888888866655566666788888888888866665666665 68888899998884 555566566888999999
Q ss_pred ccCCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCCCcCeEEEecCCCC-ccccccCcCCCCceeeEEe
Q 046587 630 GECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPTSLTSLRIGDFKMY-KTLVQWGLHRLTSLGRLYI 701 (703)
Q Consensus 630 ~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l-~~~~~~~l~~l~~L~~L~l 701 (703)
++| .++.+|..+..+++|+.|++++| .+..+|.. +.+++|+.|++++|+.. ..++.+ +..++.|+.+++
T Consensus 199 s~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~-~~~l~~L~~l~~ 269 (487)
T 3oja_A 199 SSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAK 269 (487)
T ss_dssp CSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH-HTTCHHHHHHHH
T ss_pred CCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHH-HHhCCCCcEEec
Confidence 885 47777777888889999999998 77778765 44688999999988766 244444 566666655443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=4.3e-18 Score=172.07 Aligned_cols=144 Identities=9% Similarity=0.113 Sum_probs=82.6
Q ss_pred ccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccC-CCCCCCcEEEecCCCCCCccCCCCCCCCccEEEecc
Q 046587 553 LQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGL-PNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIGE 631 (703)
Q Consensus 553 L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 631 (703)
|++|++++|......+..+..+++|++|++++|......+..+ ..+++|++|++++| .+..++....+++|+.|++++
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSS 200 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCS
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCC
Confidence 6666666664433334444455666666666664443334443 24666666666666 344445444566677777766
Q ss_pred CCCCcccccccCCCCCcceEeeccCCCcccCCCC-CCCCCcCeEEEecCCCC-ccccccCcCCCCceeeEE
Q 046587 632 CDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEE-GFPTSLTSLRIGDFKMY-KTLVQWGLHRLTSLGRLY 700 (703)
Q Consensus 632 c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l-~~~~~~~l~~l~~L~~L~ 700 (703)
| .++.+|..+..+++|++|++++| .++.+|.. ..+++|+.|++++|+.. ..++.+ +..+++|+.++
T Consensus 201 N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~-~~~~~~L~~l~ 268 (317)
T 3o53_A 201 N-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVA 268 (317)
T ss_dssp S-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH-HHTCHHHHHHH
T ss_pred C-cCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHH-HhccccceEEE
Confidence 4 45556656666677777777777 56666654 33566777777776655 233333 55555555444
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=7.3e-17 Score=160.53 Aligned_cols=200 Identities=21% Similarity=0.179 Sum_probs=106.1
Q ss_pred CcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCccc-CccccCCCcccEEe
Q 046587 191 RRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKL-PPKMRNLINLRHLD 267 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 267 (703)
+.|++|++++|.++.+| ..|..+++|++|++++|.++.+ |..++++++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 35666666666666554 3456666666666666666654 455666666666666665434444 44566666666666
Q ss_pred ecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceE
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTL 347 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 347 (703)
+++|......|..++.+++|++|++..+.....+ ...+..+++|+.|++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------------------~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-------------------------------DDTFRDLGNLTHLFL 160 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------------------TTTTTTCTTCCEEEC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-------------------------------HhHhccCCCccEEEC
Confidence 6666544333444566666666654333221110 011222333333333
Q ss_pred EccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCC-CcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccce
Q 046587 348 DWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARF-PHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKH 425 (703)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~ 425 (703)
+.+.-. ......+..+++|+.|+++++....+ |.++.. +++|+.|++++|......+ .+..+++|+.
T Consensus 161 ~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 161 HGNRIS---------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp CSSCCC---------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred CCCccc---------ccCHHHhcCccccCEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 322100 00011233455666666666655554 445544 6677777777776644333 3566777777
Q ss_pred eeecccc
Q 046587 426 LAVKGLK 432 (703)
Q Consensus 426 L~l~~~~ 432 (703)
|++++|.
T Consensus 230 L~l~~N~ 236 (285)
T 1ozn_A 230 LRLNDNP 236 (285)
T ss_dssp EECCSSC
T ss_pred EeccCCC
Confidence 7777665
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=6.5e-20 Score=203.42 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=89.9
Q ss_pred cCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCC-CCCc--cCccccCCCcCceEeccCCCCcc-----cc
Q 046587 159 NEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGY-CIGE--LPMSFEDLRLLRLLNLADTDIRS-----LP 230 (703)
Q Consensus 159 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~l~~--lp~~i~~l~~L~~L~L~~~~i~~-----lp 230 (703)
..+++|+.|.+.++. +....+......+++|++|++++| .++. ++..+..+++|++|++++|.++. ++
T Consensus 102 ~~~~~L~~L~L~~~~----~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV----VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHCTTCCEEEEESCB----CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HhCCCCCeEEeeCcE----EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 357788888887653 333333333336789999999988 4544 45555678999999999998653 33
Q ss_pred ccccccccCcEEecCCCC-CC--cccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCe
Q 046587 231 ESTCTLLNLEILILRNCS-RL--IKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSN 292 (703)
Q Consensus 231 ~~i~~L~~L~~L~L~~~~-~l--~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 292 (703)
.....+++|++|++++|. .+ ..++..+.++++|++|++++|.....+|..++++++|++|.+
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 334467899999999874 11 112222356799999999998656667777778888888864
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1.7e-15 Score=155.10 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=49.5
Q ss_pred cccEEEEecCCCCccccc-cccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEec
Q 046587 552 MLQHLSIENCPELTSLSS-GVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGIG 630 (703)
Q Consensus 552 ~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~ 630 (703)
+|++|.+.++..++.+|. .+..+++|++|++++| .++.+|.. .+.+|+.|.+.+|..++.+|....+++|+.+++.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 366777766666666664 3456677777777776 45566543 2566666666667677777765556677777765
Q ss_pred c
Q 046587 631 E 631 (703)
Q Consensus 631 ~ 631 (703)
+
T Consensus 255 ~ 255 (350)
T 4ay9_X 255 Y 255 (350)
T ss_dssp C
T ss_pred C
Confidence 4
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=7.2e-17 Score=162.64 Aligned_cols=202 Identities=20% Similarity=0.215 Sum_probs=131.5
Q ss_pred CCCcccEEecCCCCCC-ccCccc--cCCCcCceEeccCCCCcccccccccc-----ccCcEEecCCCCCCcccC-ccccC
Q 046587 189 KFRRLRMLSLQGYCIG-ELPMSF--EDLRLLRLLNLADTDIRSLPESTCTL-----LNLEILILRNCSRLIKLP-PKMRN 259 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~-~lp~~i--~~l~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp-~~i~~ 259 (703)
.+++|++|++++|.+. .+|..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|. +..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence 5677888888888875 567665 77888888888888887777777766 788888888874 44444 66778
Q ss_pred CCcccEEeecCcccccc--CCccC--CCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhh
Q 046587 260 LINLRHLDIRGAKLLKE--MPFGM--KELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREAT 335 (703)
Q Consensus 260 L~~L~~L~l~~~~~~~~--~p~~i--~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~ 335 (703)
+++|++|++++|..... +|..+ +.+++|++|++..+.... ........
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------------~~~~~~~~ 223 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET----------------------------PSGVCSAL 223 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC----------------------------HHHHHHHH
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc----------------------------hHHHHHHH
Confidence 88888888888764433 23333 667777777654332110 01111222
Q ss_pred cccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC
Q 046587 336 VCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP 415 (703)
Q Consensus 336 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~ 415 (703)
+..+++|+.|+++++.-.... ....+..+++|+.|++++|....+|.++. ++|+.|++++|...+. |
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p 290 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAA--------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-P 290 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSC--------CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-C
T ss_pred HhcCCCCCEEECCCCcCCccc--------chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-h
Confidence 345567777777665411100 01223345778888888888877777663 6788888888877544 5
Q ss_pred CCCCcCccceeeecccc
Q 046587 416 SLGLLSSLKHLAVKGLK 432 (703)
Q Consensus 416 ~l~~l~~L~~L~l~~~~ 432 (703)
.+..+++|++|++++|.
T Consensus 291 ~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 291 SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTTSCEEEEEECTTCT
T ss_pred hHhhCCCCCEEeccCCC
Confidence 57788888888888765
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1e-15 Score=152.02 Aligned_cols=175 Identities=19% Similarity=0.123 Sum_probs=107.1
Q ss_pred CcccEEecCCCCCCcc-CccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeec
Q 046587 191 RRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIR 269 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 269 (703)
+.+++|++++|.++.+ |..|..+++|++|++++|.++.+|.. +.+++|++|++++| .+..+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence 4566667776666555 34566666777777777666666543 56666777777665 555666666666677777776
Q ss_pred CccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587 270 GAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDW 349 (703)
Q Consensus 270 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 349 (703)
+|.+....|..++.+++|++|++..+.....
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~------------------------------------------------- 139 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTL------------------------------------------------- 139 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-------------------------------------------------
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCcc-------------------------------------------------
Confidence 6653322223355666666555432211110
Q ss_pred cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeec
Q 046587 350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVK 429 (703)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~ 429 (703)
....+..+++|+.|++++|....+|..... .+++|+.|++++|......+.+..+++|+.|++.
T Consensus 140 ---------------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 140 ---------------PPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp ---------------CTTTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred ---------------ChhhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 011233456677777777777777765432 3778888888888775444456667788888888
Q ss_pred ccc
Q 046587 430 GLK 432 (703)
Q Consensus 430 ~~~ 432 (703)
+|+
T Consensus 204 ~Np 206 (290)
T 1p9a_G 204 GNP 206 (290)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=7.4e-15 Score=150.42 Aligned_cols=238 Identities=15% Similarity=0.151 Sum_probs=133.7
Q ss_pred eEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeecccccCCCcccCCCccce
Q 046587 377 KVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEI 455 (703)
Q Consensus 377 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~ 455 (703)
.++-+++...++|..+ .+++++|++++|.+....+ .+..+++|++|++++|...+.++... |.
T Consensus 13 ~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~--------f~---- 76 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--------FS---- 76 (350)
T ss_dssp EEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS--------BC----
T ss_pred EEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH--------hh----
Confidence 4556667777888765 3688999999988754433 57889999999999887666554321 11
Q ss_pred eceeeccCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCccccccccccc
Q 046587 456 LKPSIAECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEE 535 (703)
Q Consensus 456 L~l~~~~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~ 535 (703)
.++++.++.+.++.++ ..++.+. +.++++|+.+++++|
T Consensus 77 -----------------~L~~l~~~l~~~~N~l----------------~~l~~~~---------f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 77 -----------------NLPKLHEIRIEKANNL----------------LYINPEA---------FQNLPNLQYLLISNT 114 (350)
T ss_dssp -----------------SCTTCCEEEEEEETTC----------------CEECTTS---------BCCCTTCCEEEEEEE
T ss_pred -----------------cchhhhhhhcccCCcc----------------cccCchh---------hhhcccccccccccc
Confidence 1233333222222211 1111110 111122222222222
Q ss_pred ccCCCCCCCCCCCCcccccEEEEecCCCCcccccc-ccc-cCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCC
Q 046587 536 DASSSSPSPASSSSPVMLQHLSIENCPELTSLSSG-VQF-LEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLV 613 (703)
Q Consensus 536 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~-~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~ 613 (703)
.+....+. .+....++..|++.++..+..++.. +.. ...++.|++++| .++.+|......++|++|++.++..++
T Consensus 115 ~l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~ 191 (350)
T 4ay9_X 115 GIKHLPDV--HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLE 191 (350)
T ss_dssp CCSSCCCC--TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCC
T ss_pred ccccCCch--hhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCccc
Confidence 22211111 2233344667777776666666543 222 235677777776 455666666666677777777766777
Q ss_pred ccCCCC--CCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCCCCCcCeEEEec
Q 046587 614 SFPERG--LPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGD 678 (703)
Q Consensus 614 ~~~~~~--~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 678 (703)
.+|... .+++|+.|+++++ .++.+|.. .+.+|+.|.+.+|.+++.+|....+++|+.+++.+
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CCCHHHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 776543 2566777777764 56666653 35666666666676777777544566777777654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=8.7e-16 Score=151.92 Aligned_cols=201 Identities=17% Similarity=0.134 Sum_probs=111.9
Q ss_pred ceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCc-cccCCCcCceEeccCCCCcccc-ccccccccCc
Q 046587 163 HLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPM-SFEDLRLLRLLNLADTDIRSLP-ESTCTLLNLE 240 (703)
Q Consensus 163 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~ 240 (703)
+++.|.+.++. ...+.+..|.++++|++|++++|.+..++. .++.+++|++|++++|.++.++ ..++++++|+
T Consensus 29 ~l~~L~ls~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 29 STKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TCCEEECTTCC-----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CccEEECCCCc-----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 45555555443 122223345556666666666666655533 4566666666666666665444 3456666666
Q ss_pred EEecCCCCCCcccCc-cccCCCcccEEeecCccccc-cCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceE
Q 046587 241 ILILRNCSRLIKLPP-KMRNLINLRHLDIRGAKLLK-EMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELC 318 (703)
Q Consensus 241 ~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~ 318 (703)
+|++++| .+..++. .++++++|++|++++|.... .+|..++.+++|++|++..+.....
T Consensus 104 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~------------------ 164 (276)
T 2z62_A 104 KLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------------------ 164 (276)
T ss_dssp EEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE------------------
T ss_pred EEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC------------------
Confidence 6666665 3333332 45666666666666664322 2455555555555555433221110
Q ss_pred EeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcc-eEEEeccCCCCCCcccCCCCC
Q 046587 319 MSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIK-KVAIRNYGGARFPHWIGDPSF 397 (703)
Q Consensus 319 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~~ 397 (703)
....+ ..+..++.+. .|+++++....++..... .
T Consensus 165 -------------~~~~~------------------------------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~ 199 (276)
T 2z62_A 165 -------------YCTDL------------------------------RVLHQMPLLNLSLDLSLNPMNFIQPGAFK--E 199 (276)
T ss_dssp -------------CGGGG------------------------------HHHHTCTTCCEEEECCSSCCCEECTTSSC--S
T ss_pred -------------CHHHh------------------------------hhhhhccccceeeecCCCcccccCccccC--C
Confidence 00011 1111122222 567777777777665554 4
Q ss_pred CCccEEEEeccCCCCcCC-CCCCcCccceeeecccc
Q 046587 398 SKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLK 432 (703)
Q Consensus 398 ~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~ 432 (703)
.+|+.|++++|......+ .++.+++|+.|++++|.
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 589999999888755444 36788999999998875
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=3.9e-15 Score=146.50 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=97.8
Q ss_pred cccEEecCCCCCCccCccccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccCcc-ccCCCcccEEeec
Q 046587 192 RLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLPPK-MRNLINLRHLDIR 269 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 269 (703)
..+.++++++.++.+|..+. .+|++|++++|.++.+|. .++++++|++|++++| .+..+|.. +.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 35666777666666666554 466777777777666654 5666777777777765 45555544 3567777777777
Q ss_pred CccccccCCc-cCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEE
Q 046587 270 GAKLLKEMPF-GMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLD 348 (703)
Q Consensus 270 ~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 348 (703)
+|.. ..+|. .++.+++|++|++..+.....
T Consensus 94 ~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------------------------------ 124 (270)
T 2o6q_A 94 DNKL-QALPIGVFDQLVNLAELRLDRNQLKSL------------------------------------------------ 124 (270)
T ss_dssp SSCC-CCCCTTTTTTCSSCCEEECCSSCCCCC------------------------------------------------
T ss_pred CCcC-CcCCHhHcccccCCCEEECCCCccCee------------------------------------------------
Confidence 6643 33332 245555555554322211100
Q ss_pred ccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceee
Q 046587 349 WGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLA 427 (703)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~ 427 (703)
....+..+++|+.|+++++....+|..... .+++|+.|++++|......+ .+..+++|++|+
T Consensus 125 ----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 125 ----------------PPRVFDSLTKLTYLSLGYNELQSLPKGVFD-KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp ----------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----------------CHHHhCcCcCCCEEECCCCcCCccCHhHcc-CCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 001122344555555566655555544221 26777777777776654443 366777777777
Q ss_pred ecccc
Q 046587 428 VKGLK 432 (703)
Q Consensus 428 l~~~~ 432 (703)
+++|.
T Consensus 188 L~~N~ 192 (270)
T 2o6q_A 188 LDNNQ 192 (270)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 77663
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=2.3e-16 Score=168.79 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=97.5
Q ss_pred hhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCccc
Q 046587 185 DLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLR 264 (703)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 264 (703)
..|..+++|++|+|++|.+...++ ++.+++|++|+|++|.++.+|.. ++|++|++++| .+..+|. ..+++|+
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N-~l~~~~~--~~l~~L~ 123 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANN-NISRVSC--SRGQGKK 123 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSS-CCCCEEE--CCCSSCE
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCC-cCCCCCc--cccCCCC
Confidence 344445555555555555443332 44555555555555544444321 44555555554 2333322 1334455
Q ss_pred EEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcc-cccccc
Q 046587 265 HLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVC-EKHNLE 343 (703)
Q Consensus 265 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~-~~~~L~ 343 (703)
+|++++|......|..++.+++|++|++..+. .....+..+. .+++|+
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------------------------------l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-------------------------------IDTVNFAELAASSDTLE 172 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-------------------------------CCEEEGGGGGGGTTTCC
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCC-------------------------------CCCcChHHHhhhCCccc
Confidence 55555554333333344444444444432221 1111122222 455666
Q ss_pred cceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCcc
Q 046587 344 ALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSL 423 (703)
Q Consensus 344 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L 423 (703)
.|+++++.-. + ......+++|+.|++++|....+|..+.. +++|+.|++++|......+.++.+++|
T Consensus 173 ~L~Ls~N~l~-----~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 173 HLNLQYNFIY-----D------VKGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp EEECTTSCCC-----E------EECCCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred EEecCCCccc-----c------ccccccCCCCCEEECCCCCCCCCCHhHcC--CCCccEEEecCCcCcccchhhccCCCC
Confidence 6666544310 0 01222466777777777777666666554 677777777777665433356667777
Q ss_pred ceeeeccccc
Q 046587 424 KHLAVKGLKK 433 (703)
Q Consensus 424 ~~L~l~~~~~ 433 (703)
+.|++++|..
T Consensus 240 ~~L~l~~N~l 249 (487)
T 3oja_A 240 EHFDLRGNGF 249 (487)
T ss_dssp CEEECTTCCB
T ss_pred CEEEcCCCCC
Confidence 7777776653
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.3e-15 Score=150.64 Aligned_cols=101 Identities=24% Similarity=0.278 Sum_probs=66.7
Q ss_pred CcccEEecCCCCCCccCc-cccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccC-ccccCCCcccEEe
Q 046587 191 RRLRMLSLQGYCIGELPM-SFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLD 267 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 267 (703)
+.|++|++++|.++.++. .|.++++|++|++++|.++.++. .++++++|++|++++|. +..++ ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEE
Confidence 357777888777777654 67777778888887777776654 56777778888887763 44443 5577777777777
Q ss_pred ecCccccccCCccCCCCCCCcccCe
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLSN 292 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~~ 292 (703)
+++|......+..++.+++|++|++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCCccccCchhcccCCCCCEEEC
Confidence 7777533322223555555555543
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=7.7e-15 Score=141.64 Aligned_cols=207 Identities=17% Similarity=0.201 Sum_probs=125.9
Q ss_pred CCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceeeecccccceeecccccCCCcccCCCccceeceeeccC
Q 046587 385 GARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLAVKGLKKLKSIESEVYGEGFSMPFPSLEILKPSIAEC 463 (703)
Q Consensus 385 ~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 463 (703)
...+|. + .++++.|++++|......+ .++.+++|++|++++|..++.++...
T Consensus 23 l~~ip~-~----~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~---------------------- 75 (239)
T 2xwt_C 23 IQRIPS-L----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS---------------------- 75 (239)
T ss_dssp CSSCCC-C----CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT----------------------
T ss_pred ccccCC-C----CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH----------------------
Confidence 556666 3 3578888998888765544 57888889999988876555554211
Q ss_pred CCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCCCCCccEEEEecCcccccccccccccCCCCCC
Q 046587 464 PKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPS 543 (703)
Q Consensus 464 ~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~ 543 (703)
...+++|+.|++++|..+ ..++.+
T Consensus 76 -------f~~l~~L~~L~l~~~n~l----------------~~i~~~--------------------------------- 99 (239)
T 2xwt_C 76 -------FYNLSKVTHIEIRNTRNL----------------TYIDPD--------------------------------- 99 (239)
T ss_dssp -------EESCTTCCEEEEEEETTC----------------CEECTT---------------------------------
T ss_pred -------cCCCcCCcEEECCCCCCe----------------eEcCHH---------------------------------
Confidence 113566777777763221 111100
Q ss_pred CCCCCCcccccEEEEecCCCCccccccccccCCcc---EEEeecCcCcccccc-cCCCCCCCc-EEEecCCCCCCccCCC
Q 046587 544 PASSSSPVMLQHLSIENCPELTSLSSGVQFLEALE---FLEIRDCPELESILD-GLPNLKCLQ-SIYIWKCPSLVSFPER 618 (703)
Q Consensus 544 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~---~L~l~~c~~l~~~p~-~~~~l~~L~-~L~l~~c~~l~~~~~~ 618 (703)
.+..+++|++|++++|. ++.+|. +..+++|+ +|++++|+.++.+|. .+.++++|+ +|++++| .+..+|..
T Consensus 100 --~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~ 174 (239)
T 2xwt_C 100 --ALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY 174 (239)
T ss_dssp --SEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTT
T ss_pred --HhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHh
Confidence 22233335566666553 333444 33455555 777777644555543 366677777 7777776 34455543
Q ss_pred CC-CCCccEEEeccCCCCccccc-ccCCC-CCcceEeeccCCCcccCCCCCCCCCcCeEEEecCCC
Q 046587 619 GL-PNTISRVGIGECDKLEALPN-DLHKI-NSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKM 681 (703)
Q Consensus 619 ~~-~~~L~~L~l~~c~~l~~lp~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 681 (703)
.+ .++|+.|++++|..++.+|. .+..+ ++|+.|++++| .++.+|.. .+++|+.|++++|..
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC--
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccC
Confidence 22 35677777777655666643 46677 78888888887 77777765 556888888877654
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=2e-15 Score=145.83 Aligned_cols=205 Identities=19% Similarity=0.240 Sum_probs=150.4
Q ss_pred cCCCcccCCCCCCCCccEEEEecCCCccccceeeEEEcCCCccccccccCC--CCCccEEEEecCcccccccccccccCC
Q 046587 462 ECPKLSGQLPELLPSLETLVVSKCKKLFIRAEWMLYIRDRDCLTFIARRRL--PASLKRLEIENCEKLQRLFDDEEDASS 539 (703)
Q Consensus 462 ~~~~l~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~i~~~~~l~~~~~~~~--~~~L~~L~l~~~~~L~~l~~~~~~~~~ 539 (703)
.|..+. .+|...++|+.|++++|. ++.++...+ .++|+.|+++++..++.+
T Consensus 19 ~c~~l~-~ip~~~~~l~~L~l~~n~-----------------l~~i~~~~~~~l~~L~~L~l~~n~~l~~i--------- 71 (239)
T 2xwt_C 19 TCKDIQ-RIPSLPPSTQTLKLIETH-----------------LRTIPSHAFSNLPNISRIYVSIDVTLQQL--------- 71 (239)
T ss_dssp EECSCS-SCCCCCTTCCEEEEESCC-----------------CSEECTTTTTTCTTCCEEEEECCSSCCEE---------
T ss_pred EccCcc-ccCCCCCcccEEEEeCCc-----------------ceEECHHHccCCCCCcEEeCCCCCCccee---------
Confidence 476665 666644589999999987 344443322 236666666665444433
Q ss_pred CCCCCCCCCCcccccEEEEecCCCCcccc-ccccccCCccEEEeecCcCcccccccCCCCCCCc---EEEecCCCCCCcc
Q 046587 540 SSPSPASSSSPVMLQHLSIENCPELTSLS-SGVQFLEALEFLEIRDCPELESILDGLPNLKCLQ---SIYIWKCPSLVSF 615 (703)
Q Consensus 540 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~---~L~l~~c~~l~~~ 615 (703)
.+. .+..+++|++|++++|..++.++ ..+..+++|++|++++|. ++.+|. +..+++|+ +|++++|+.+..+
T Consensus 72 -~~~--~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 72 -ESH--SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp -CTT--TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEE
T ss_pred -CHh--HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhc
Confidence 211 45667789999999844566665 456778899999999985 556876 88888888 9999999778888
Q ss_pred CCCC--CCCCcc-EEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCC--C-CCcCeEEEecCCCCccccccC
Q 046587 616 PERG--LPNTIS-RVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGF--P-TSLTSLRIGDFKMYKTLVQWG 689 (703)
Q Consensus 616 ~~~~--~~~~L~-~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~-~~L~~L~i~~c~~l~~~~~~~ 689 (703)
+... .+++|+ .|+++++ .++.+|......++|++|++++|+.++.++...+ + ++|+.|++++|. ++.++..
T Consensus 147 ~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~- 223 (239)
T 2xwt_C 147 PVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK- 223 (239)
T ss_dssp CTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT-
T ss_pred CcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh-
Confidence 7643 378899 9999985 5678887655558999999999977889887644 5 899999999965 5667644
Q ss_pred cCCCCceeeEEecC
Q 046587 690 LHRLTSLGRLYIVD 703 (703)
Q Consensus 690 l~~l~~L~~L~l~~ 703 (703)
.+++|+.|++++
T Consensus 224 --~~~~L~~L~l~~ 235 (239)
T 2xwt_C 224 --GLEHLKELIARN 235 (239)
T ss_dssp --TCTTCSEEECTT
T ss_pred --HhccCceeeccC
Confidence 567788887764
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=2.2e-15 Score=148.41 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=95.5
Q ss_pred CCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCc-cccCCCcccEEe
Q 046587 189 KFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPP-KMRNLINLRHLD 267 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 267 (703)
.++.|+.|+++++.+..++ .++.+++|++|++++|.++.++ .++++++|++|++++| .+..+|. .++++++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEE
Confidence 3455666666666665554 3556666666666666665543 5566666666666665 3444443 345666666666
Q ss_pred ecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceE
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTL 347 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 347 (703)
+++|......+..++.+++|++|++..+.....+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------------------------------------- 149 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP---------------------------------------------- 149 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------------------------------
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccC----------------------------------------------
Confidence 6666433222222455555555544322111100
Q ss_pred EccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCcccee
Q 046587 348 DWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHL 426 (703)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L 426 (703)
...+..+++|+.|++++|....+|..... .+++|+.|++++|...+..+ .++.+++|+.|
T Consensus 150 ------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 150 ------------------KGVFDKLTNLTELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp ------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ------------------HHHhccCccCCEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 01122244555555555555555443211 26777777777777655444 36777788888
Q ss_pred eecccc
Q 046587 427 AVKGLK 432 (703)
Q Consensus 427 ~l~~~~ 432 (703)
++++|.
T Consensus 211 ~l~~N~ 216 (272)
T 3rfs_A 211 WLHDNP 216 (272)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 887764
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=7.1e-16 Score=154.76 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=102.1
Q ss_pred CCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeec
Q 046587 190 FRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIR 269 (703)
Q Consensus 190 l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 269 (703)
+++|++|+++++.+..+| .+..+++|++|++++|.++.+|. ++.+++|++|++++| .+..+| .++.+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECC
Confidence 445555566655555554 45555566666666665555554 555566666666655 344444 35555666666665
Q ss_pred CccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587 270 GAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDW 349 (703)
Q Consensus 270 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 349 (703)
+|. +..++. ++.+++|++|++..+.....+. +..+++|+.|+++.
T Consensus 116 ~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~---------------------------------l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 116 STQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP---------------------------------LAGLTNLQYLSIGN 160 (308)
T ss_dssp TSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG---------------------------------GGGCTTCCEEECCS
T ss_pred CCC-CCCchh-hcCCCCCCEEECCCCccCcCcc---------------------------------ccCCCCccEEEccC
Confidence 554 233332 5555555555443322111100 22233444444433
Q ss_pred cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeec
Q 046587 350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVK 429 (703)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~ 429 (703)
+.-. . ...+..+++|+.|+++++....++. +.. +++|+.|++++|...... ++..+++|+.|+++
T Consensus 161 n~l~-----~------~~~l~~l~~L~~L~l~~n~l~~~~~-l~~--l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 161 AQVS-----D------LTPLANLSKLTTLKADDNKISDISP-LAS--LPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT 225 (308)
T ss_dssp SCCC-----C------CGGGTTCTTCCEEECCSSCCCCCGG-GGG--CTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEE
T ss_pred CcCC-----C------ChhhcCCCCCCEEECCCCccCcChh-hcC--CCCCCEEEccCCccCccc-cccCCCCCCEEEcc
Confidence 2200 0 0114456677777777777766665 332 778888888887764433 46778888888887
Q ss_pred ccc
Q 046587 430 GLK 432 (703)
Q Consensus 430 ~~~ 432 (703)
+|.
T Consensus 226 ~N~ 228 (308)
T 1h6u_A 226 NQT 228 (308)
T ss_dssp EEE
T ss_pred CCe
Confidence 765
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=3.6e-15 Score=147.98 Aligned_cols=176 Identities=18% Similarity=0.165 Sum_probs=133.5
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCcccc-ccccccccCcEEecCCCCCCcccCccccCCCcccE
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLP-ESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRH 265 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 265 (703)
+.++++++.++++++.++.+|..+. .++++|++++|.++.++ ..+.++++|++|++++| .+..+|.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 5677889999999999999998775 79999999999999774 67899999999999997 67777764 89999999
Q ss_pred EeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccc
Q 046587 266 LDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEAL 345 (703)
Q Consensus 266 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L 345 (703)
|++++|. +..+|..++.+++|++|++..+.....+
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~-------------------------------------------- 116 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLP-------------------------------------------- 116 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCC--------------------------------------------
T ss_pred EECCCCc-CCcCchhhccCCCCCEEECCCCcCcccC--------------------------------------------
Confidence 9999996 5678877888888887765433221110
Q ss_pred eEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccc
Q 046587 346 TLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLK 424 (703)
Q Consensus 346 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~ 424 (703)
...+..+++|+.|+++++....+|..... .+++|+.|++++|......+ .+..+++|+
T Consensus 117 --------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 117 --------------------LGALRGLGELQELYLKGNELKTLPPGLLT-PTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp --------------------SSTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred --------------------HHHHcCCCCCCEEECCCCCCCccChhhcc-cccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 01233456777777788877777765432 37888888888887754433 356788888
Q ss_pred eeeecccc
Q 046587 425 HLAVKGLK 432 (703)
Q Consensus 425 ~L~l~~~~ 432 (703)
.|++++|.
T Consensus 176 ~L~L~~N~ 183 (290)
T 1p9a_G 176 TLLLQENS 183 (290)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 88888764
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=7.4e-15 Score=144.55 Aligned_cols=175 Identities=26% Similarity=0.317 Sum_probs=128.5
Q ss_pred CcccEEecCCCCCCccCc-cccCCCcCceEeccCCCCccccccc-cccccCcEEecCCCCCCcccCc-cccCCCcccEEe
Q 046587 191 RRLRMLSLQGYCIGELPM-SFEDLRLLRLLNLADTDIRSLPEST-CTLLNLEILILRNCSRLIKLPP-KMRNLINLRHLD 267 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 267 (703)
+.++.|++++|.+..+|. .|+.+++|++|++++|.++.+|..+ .++++|++|++++| .+..+|. .+.++++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEE
Confidence 468899999999888864 7888999999999999998888664 78999999999987 5666664 468899999999
Q ss_pred ecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceE
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTL 347 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 347 (703)
+++|......+..++.+++|++|++..+.....+
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------------------------------------- 149 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP---------------------------------------------- 149 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------------------------------
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC----------------------------------------------
Confidence 9998654444445778888888875433221110
Q ss_pred EccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcc-cCCCCCCCccEEEEeccCCCCcCC-CCCCcCccce
Q 046587 348 DWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHW-IGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKH 425 (703)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~ 425 (703)
...+..+++|+.|+++++....+|.. +.. +++|+.|++++|......+ .+..+++|+.
T Consensus 150 ------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 150 ------------------KGVFDKLTSLKELRLYNNQLKRVPEGAFDK--LTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp ------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ------------------HhHccCCcccceeEecCCcCcEeChhHhcc--CCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 01133456677777777777777654 333 7899999999987755444 4778899999
Q ss_pred eeecccc
Q 046587 426 LAVKGLK 432 (703)
Q Consensus 426 L~l~~~~ 432 (703)
|++++|+
T Consensus 210 L~l~~N~ 216 (270)
T 2o6q_A 210 LQLQENP 216 (270)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 9998876
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=6.6e-15 Score=145.01 Aligned_cols=199 Identities=20% Similarity=0.259 Sum_probs=136.3
Q ss_pred ccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCcccccc-cccc
Q 046587 158 FNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPES-TCTL 236 (703)
Q Consensus 158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L 236 (703)
...+++|+.|.+.++. + ... ..+..+++|++|++++|.+..++ .++.+++|++|++++|.++.+|.. ++++
T Consensus 37 ~~~l~~L~~L~l~~~~----i-~~~--~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD----I-KSV--QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HHHHTTCCEEECTTSC----C-CCC--TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred cccccceeeeeeCCCC----c-ccc--cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCC
Confidence 3456777777776554 1 111 23667888999999999887764 788889999999999988877754 6889
Q ss_pred ccCcEEecCCCCCCcccCc-cccCCCcccEEeecCccccccCCcc-CCCCCCCcccCeeEeecCCCCCChhhhhhhhccC
Q 046587 237 LNLEILILRNCSRLIKLPP-KMRNLINLRHLDIRGAKLLKEMPFG-MKELKNLQTLSNFIVGKGETASGLEDLKCLNFLC 314 (703)
Q Consensus 237 ~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~ 314 (703)
++|++|++++| .+..+|. .++++++|++|++++|... .+|.. ++.+++|++|++..+.....+
T Consensus 109 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------------- 173 (272)
T 3rfs_A 109 TNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLP------------- 173 (272)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred cCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccC-------------
Confidence 99999999987 4555554 4788999999999988644 44443 678888888775443221110
Q ss_pred CceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcc-cC
Q 046587 315 DELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHW-IG 393 (703)
Q Consensus 315 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~ 393 (703)
...+..+++|+.|++++|....+|.. +.
T Consensus 174 ---------------------------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 174 ---------------------------------------------------EGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp ---------------------------------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ---------------------------------------------------HHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence 01123456677777777777666654 34
Q ss_pred CCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecccccceeec
Q 046587 394 DPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLKKLKSIE 438 (703)
Q Consensus 394 ~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~~~ 438 (703)
. +++|+.|++++|... +.+|+|+.|.+..+.....++
T Consensus 203 ~--l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 203 R--LTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp T--CTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred C--CcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence 3 789999999988653 346678888777665444443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=146.71 Aligned_cols=205 Identities=17% Similarity=0.135 Sum_probs=142.9
Q ss_pred CCCcccEEecCCCCCC-ccCccc--cCCCcCceEeccCCCCccc-c----ccccccccCcEEecCCCCCCcccCccccCC
Q 046587 189 KFRRLRMLSLQGYCIG-ELPMSF--EDLRLLRLLNLADTDIRSL-P----ESTCTLLNLEILILRNCSRLIKLPPKMRNL 260 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~-~lp~~i--~~l~~L~~L~L~~~~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 260 (703)
.++.|++|++++|.+. ..|..+ +.+.+|++|++++|.++.. | ..+..+++|++|++++|......|..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3466999999999985 457777 8999999999999999842 2 345679999999999985444445678999
Q ss_pred CcccEEeecCcccccc--CC--ccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhc
Q 046587 261 INLRHLDIRGAKLLKE--MP--FGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATV 336 (703)
Q Consensus 261 ~~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l 336 (703)
++|++|++++|..... ++ ..++.+++|++|++..+..... .......+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----------------------------~~~~~~l~ 220 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----------------------------TGVCAALA 220 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----------------------------HHHHHHHH
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----------------------------HHHHHHHH
Confidence 9999999999975432 22 2347889999998755432110 11111123
Q ss_pred ccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCC
Q 046587 337 CEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPS 416 (703)
Q Consensus 337 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~ 416 (703)
..+++|+.|+++++.-..... .....+..+++|+.|++++|....+|.++ +++|+.|++++|...+ +|.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~-~~~ 289 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVN------PSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNR-APQ 289 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCC------SCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCS-CCC
T ss_pred hcCCCCCEEECCCCCCCccch------hhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCC-Cch
Confidence 456778888887655111100 01122223468888999888888888766 3688899998887754 355
Q ss_pred CCCcCccceeeecccc
Q 046587 417 LGLLSSLKHLAVKGLK 432 (703)
Q Consensus 417 l~~l~~L~~L~l~~~~ 432 (703)
+..+++|+.|++++|.
T Consensus 290 ~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTSCCCCSCEECSSTT
T ss_pred hhhCCCccEEECcCCC
Confidence 6778888888888875
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=5.7e-14 Score=136.49 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=113.3
Q ss_pred cccEEecCCCCCCccCccccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccC-ccccCCCcccEEeec
Q 046587 192 RLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIR 269 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 269 (703)
..++++++++.++.+|..+. .+|++|++++|.++.++. .++++++|++|++++| .+..++ ..+.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 45677777777777777665 577888888887776654 5777788888888876 344443 446777888888888
Q ss_pred CccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEc
Q 046587 270 GAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDW 349 (703)
Q Consensus 270 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 349 (703)
+|......+..++.+++|++|++..+.....+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------------------------------------ 123 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP------------------------------------------------ 123 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------------------------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcC------------------------------------------------
Confidence 77543333334566666666654333211110
Q ss_pred cCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCc-ccCCCCCCCccEEEEeccCCCCcCC-CCCCcCccceee
Q 046587 350 GSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPH-WIGDPSFSKMKVLKLENCHNCVSLP-SLGLLSSLKHLA 427 (703)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~ 427 (703)
...+..+++|+.|+++++....+|. .+.. +++|+.|++++|......+ .+..+++|+.|+
T Consensus 124 ----------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 124 ----------------SGVFDRLTKLKELRLNTNQLQSIPAGAFDK--LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp ----------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ----------------hhHhccCCcccEEECcCCcCCccCHHHcCc--CcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 0112335566677777777777665 3443 7888999998888765554 577888899999
Q ss_pred ecccc
Q 046587 428 VKGLK 432 (703)
Q Consensus 428 l~~~~ 432 (703)
+++|.
T Consensus 186 l~~N~ 190 (251)
T 3m19_A 186 LFGNQ 190 (251)
T ss_dssp CCSCC
T ss_pred eeCCc
Confidence 88876
No 88
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.54 E-value=5.8e-16 Score=167.97 Aligned_cols=110 Identities=18% Similarity=0.284 Sum_probs=86.8
Q ss_pred HHHhhcCcCCCCCCCchHHHHHhhccCchhhhhHhh-----------hhcCCCCCCccCHHHHHHHHHHC--CCCccCCC
Q 046587 8 DILDSKIWDLPQQSGVLPVLRLSYHHLPSHLKRCFA-----------YCAIFPKDYEFNEKELTFLWMAG--GIIRQSRK 74 (703)
Q Consensus 8 ~~l~~~~~~~~~~~~i~~~L~lSYd~L~~~~K~cFL-----------~~a~fp~~~~i~~~~Li~~wi~~--g~~~~~~~ 74 (703)
+.+.+..+..+ ..+|+++|++||++||.++|.||+ |||+||+|+.|+ ++.|+|+ ||+.....
T Consensus 349 ~~l~~~l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~ 423 (549)
T 2a5y_B 349 AQLNNKLESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEE 423 (549)
T ss_dssp HHHHHHHHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------
T ss_pred HHhHHHhhccc-HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCC
Confidence 34444333323 267999999999999999999999 999999999998 8999999 99987644
Q ss_pred CchHHHHHHHHHHHHHhCCCccccCC-CCCceeeCcHHHHHHHHhhccce
Q 046587 75 NERLEDLGGKCFHDLVSRSIFPQTSS-GSSKFVMHDLIHDLAELVSRETI 123 (703)
Q Consensus 75 ~~~~~~~~~~~~~~L~~~~ll~~~~~-~~~~~~mHdlv~d~a~~i~~~~~ 123 (703)
...++++++ |+++|+++||+++... ...+|+|||+||++|++++++++
T Consensus 424 ~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 424 EQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 667888888 9999999999998653 35679999999999999998765
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=1.9e-14 Score=144.35 Aligned_cols=193 Identities=17% Similarity=0.224 Sum_probs=136.7
Q ss_pred cCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCcccccccccccc
Q 046587 159 NEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLN 238 (703)
Q Consensus 159 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 238 (703)
..+++|+.|.+.++. + ..+ + .+..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .++.+++
T Consensus 38 ~~l~~L~~L~l~~~~----i-~~l-~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG----V-TTI-E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHTCCEEECTTSC----C-CCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred HHcCCcCEEEeeCCC----c-cCc-h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 356677777776654 1 111 1 36678888889998888888876 888888999999888888875 6888888
Q ss_pred CcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceE
Q 046587 239 LEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELC 318 (703)
Q Consensus 239 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~ 318 (703)
|++|++++| .+..+|. +..+++|++|++++|. +..++. ++.+++|+.|++..+.....+
T Consensus 109 L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~----------------- 167 (308)
T 1h6u_A 109 IKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLT----------------- 167 (308)
T ss_dssp CCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG-----------------
T ss_pred CCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCCh-----------------
Confidence 999999887 5666665 8888888999988885 344443 777888888876544322110
Q ss_pred EeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCC
Q 046587 319 MSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFS 398 (703)
Q Consensus 319 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~ 398 (703)
.+..+++|+.|+++.+.-. . ...+..+++|+.|++++|....++. +.. ++
T Consensus 168 ----------------~l~~l~~L~~L~l~~n~l~-----~------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~--l~ 217 (308)
T 1h6u_A 168 ----------------PLANLSKLTTLKADDNKIS-----D------ISPLASLPNLIEVHLKNNQISDVSP-LAN--TS 217 (308)
T ss_dssp ----------------GGTTCTTCCEEECCSSCCC-----C------CGGGGGCTTCCEEECTTSCCCBCGG-GTT--CT
T ss_pred ----------------hhcCCCCCCEEECCCCccC-----c------ChhhcCCCCCCEEEccCCccCcccc-ccC--CC
Confidence 0344556666666554311 0 1115567889999999998888875 443 89
Q ss_pred CccEEEEeccCCC
Q 046587 399 KMKVLKLENCHNC 411 (703)
Q Consensus 399 ~L~~L~l~~~~~~ 411 (703)
+|+.|++++|...
T Consensus 218 ~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 218 NLFIVTLTNQTIT 230 (308)
T ss_dssp TCCEEEEEEEEEE
T ss_pred CCCEEEccCCeee
Confidence 9999999999863
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=2e-14 Score=142.73 Aligned_cols=168 Identities=16% Similarity=0.223 Sum_probs=104.2
Q ss_pred CCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEee
Q 046587 189 KFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDI 268 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 268 (703)
.+++|++|++++|.+..++ .++.+++|++|++++|.++.++. ++++++|++|++++| .+..+|. ++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 4566777777777777765 36777777777777777777765 777777777777776 4555554 777777777777
Q ss_pred cCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEE
Q 046587 269 RGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLD 348 (703)
Q Consensus 269 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 348 (703)
++|. +..+ ..++.+++|+.|++..+.....
T Consensus 120 ~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~~------------------------------------------------ 149 (291)
T 1h6t_A 120 EHNG-ISDI-NGLVHLPQLESLYLGNNKITDI------------------------------------------------ 149 (291)
T ss_dssp TTSC-CCCC-GGGGGCTTCCEEECCSSCCCCC------------------------------------------------
T ss_pred CCCc-CCCC-hhhcCCCCCCEEEccCCcCCcc------------------------------------------------
Confidence 7775 3333 3455566666555432211100
Q ss_pred ccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeee
Q 046587 349 WGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAV 428 (703)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l 428 (703)
..+..+++|+.|++++|....++. +.. +++|+.|++++|... .++.+..+++|+.|++
T Consensus 150 ------------------~~l~~l~~L~~L~L~~N~l~~~~~-l~~--l~~L~~L~L~~N~i~-~l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 150 ------------------TVLSRLTKLDTLSLEDNQISDIVP-LAG--LTKLQNLYLSKNHIS-DLRALAGLKNLDVLEL 207 (291)
T ss_dssp ------------------GGGGGCTTCSEEECCSSCCCCCGG-GTT--CTTCCEEECCSSCCC-BCGGGTTCTTCSEEEE
T ss_pred ------------------hhhccCCCCCEEEccCCccccchh-hcC--CCccCEEECCCCcCC-CChhhccCCCCCEEEC
Confidence 111223445555555555555544 333 677777777777653 3455667777777777
Q ss_pred cccc
Q 046587 429 KGLK 432 (703)
Q Consensus 429 ~~~~ 432 (703)
++|.
T Consensus 208 ~~n~ 211 (291)
T 1h6t_A 208 FSQE 211 (291)
T ss_dssp EEEE
T ss_pred cCCc
Confidence 7664
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=7.1e-16 Score=157.57 Aligned_cols=223 Identities=13% Similarity=0.117 Sum_probs=131.3
Q ss_pred ceeEeeeccCCCCcccchhhhhhhhcCC--CcccEEecCCCCCCccCccccCCCcCceEeccCCCCcc--cccccccccc
Q 046587 163 HLRTFLPLHERRGYYIPRTVLSDLLPKF--RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRS--LPESTCTLLN 238 (703)
Q Consensus 163 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~L~~ 238 (703)
.++.+.+.++. +. +..+..+ +.+++|+++++.+...+..+..+.+|++|++++|.++. +|..+.++++
T Consensus 48 ~~~~l~l~~~~----~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKN----LH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCB----CC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeecccccc----CC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 35666665432 11 2334455 78889999988887776667788899999999988763 7777888899
Q ss_pred CcEEecCCCCCCcccCccccCCCcccEEeecCccccc--cCCccCCCCCCCcccCeeEe-ecCCCCCChhhhhhhhccCC
Q 046587 239 LEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLK--EMPFGMKELKNLQTLSNFIV-GKGETASGLEDLKCLNFLCD 315 (703)
Q Consensus 239 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~~~~~-~~~~~~~~~~~L~~L~~L~~ 315 (703)
|++|++++|......|..++++++|++|++++|.... .++..++.+++|++|++..+ ...
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~----------------- 182 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT----------------- 182 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC-----------------
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC-----------------
Confidence 9999999885444667778888999999998884333 25555666777777765332 110
Q ss_pred ceEEeCccccCChhchhhhhccccc-ccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCC-C-CCCccc
Q 046587 316 ELCMSGLENVNNPQNAREATVCEKH-NLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGG-A-RFPHWI 392 (703)
Q Consensus 316 ~l~i~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~-~~p~~~ 392 (703)
.......+..++ +|+.|+++++.. ...+..+...+..+++|+.|+++++.. . ..+..+
T Consensus 183 -------------~~~~~~~~~~l~~~L~~L~l~~~~~------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 183 -------------EKHVQVAVAHVSETITQLNLSGYRK------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp -------------HHHHHHHHHHSCTTCCEEECCSCGG------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred -------------hHHHHHHHHhcccCCCEEEeCCCcc------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 011223344556 777777754420 001122223333455566666665542 1 233334
Q ss_pred CCCCCCCccEEEEeccCCCCc--CCCCCCcCccceeeeccc
Q 046587 393 GDPSFSKMKVLKLENCHNCVS--LPSLGLLSSLKHLAVKGL 431 (703)
Q Consensus 393 ~~~~~~~L~~L~l~~~~~~~~--l~~l~~l~~L~~L~l~~~ 431 (703)
.. +++|+.|++++|..... +..++.+++|+.|++++|
T Consensus 244 ~~--l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 244 FQ--LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GG--CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred hC--CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 33 45566666655542111 113445555555555555
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=138.57 Aligned_cols=127 Identities=16% Similarity=0.151 Sum_probs=67.8
Q ss_pred CcccccEEEEecCCCCcc--cc--ccccccCCccEEEeecCcCccccccc----CCCCCCCcEEEecCCCCCCccCCC--
Q 046587 549 SPVMLQHLSIENCPELTS--LS--SGVQFLEALEFLEIRDCPELESILDG----LPNLKCLQSIYIWKCPSLVSFPER-- 618 (703)
Q Consensus 549 ~~~~L~~L~l~~~~~l~~--l~--~~~~~~~~L~~L~l~~c~~l~~~p~~----~~~l~~L~~L~l~~c~~l~~~~~~-- 618 (703)
.+++|++|++++|...+. ++ .....+++|++|++++|. ++.++.. +..+++|++|++++|..-...|..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 334455566655543321 11 111345556666666653 3333321 344566666666666433332321
Q ss_pred --CCCCCccEEEeccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCCCCCcCeEEEecCC
Q 046587 619 --GLPNTISRVGIGECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFK 680 (703)
Q Consensus 619 --~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 680 (703)
..+++|++|++++| .++.+|..+. ++|++|++++| .++.+|....+++|+.|++++|+
T Consensus 246 ~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 RCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred hccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 11256666666663 3556666553 67777777777 66666554445677777777765
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=7e-14 Score=130.28 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=72.6
Q ss_pred cCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEe
Q 046587 188 PKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLD 267 (703)
Q Consensus 188 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 267 (703)
..+++|++|++++|.+..+| .+..+++|++|++++|.++.++ .++.+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34567788888888887777 6777888888888888766654 677788888888888744334666677888888888
Q ss_pred ecCccccccCCccCCCCCCCcccCe
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLSN 292 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~~ 292 (703)
+++|......|..++.+++|++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEc
Confidence 8887654445555666666655543
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=3.3e-16 Score=163.13 Aligned_cols=214 Identities=15% Similarity=0.115 Sum_probs=120.2
Q ss_pred hhhcCCCcccEEecCCCCCCc-----cCccccCCCcCceEeccCCCCc----cccccc-------cccccCcEEecCCCC
Q 046587 185 DLLPKFRRLRMLSLQGYCIGE-----LPMSFEDLRLLRLLNLADTDIR----SLPEST-------CTLLNLEILILRNCS 248 (703)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~ 248 (703)
..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 445667778888888887654 3344667788888888876544 334443 577888888888874
Q ss_pred CCc----ccCccccCCCcccEEeecCccccccCCc----cCCCC---------CCCcccCeeEeecCCCCCChhhhhhhh
Q 046587 249 RLI----KLPPKMRNLINLRHLDIRGAKLLKEMPF----GMKEL---------KNLQTLSNFIVGKGETASGLEDLKCLN 311 (703)
Q Consensus 249 ~l~----~lp~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l---------~~L~~L~~~~~~~~~~~~~~~~L~~L~ 311 (703)
... .+|..+.++++|++|++++|......+. .+..+ ++|++|++..+..... .
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-----~----- 175 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-----S----- 175 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG-----G-----
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH-----H-----
Confidence 333 2666677888888888888764322221 22222 5555555433221100 0
Q ss_pred ccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhh-cCCCCCCcceEEEeccCC-----
Q 046587 312 FLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLE-ILQPHKCIKKVAIRNYGG----- 385 (703)
Q Consensus 312 ~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~----- 385 (703)
.......+..+++|+.|.++++. ........... .+..+++|+.|++++|..
T Consensus 176 -----------------~~~l~~~l~~~~~L~~L~L~~n~-----l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 176 -----------------MKEWAKTFQSHRLLHTVKMVQNG-----IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp -----------------HHHHHHHHHHCTTCCEEECCSSC-----CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred -----------------HHHHHHHHHhCCCcCEEECcCCC-----CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH
Confidence 00111234455566777766543 11111111222 555667777777777765
Q ss_pred CCCCcccCCCCCCCccEEEEeccCCCCc----CC-CC--CCcCccceeeecccc
Q 046587 386 ARFPHWIGDPSFSKMKVLKLENCHNCVS----LP-SL--GLLSSLKHLAVKGLK 432 (703)
Q Consensus 386 ~~~p~~~~~~~~~~L~~L~l~~~~~~~~----l~-~l--~~l~~L~~L~l~~~~ 432 (703)
..+|.++.. +++|++|++++|..... ++ .+ +.+++|+.|++++|.
T Consensus 234 ~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 234 SALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 345555554 66777777777765433 22 22 346677777776664
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=9.3e-13 Score=127.90 Aligned_cols=133 Identities=18% Similarity=0.214 Sum_probs=82.3
Q ss_pred CCCCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCC--CCCC
Q 046587 546 SSSSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERG--LPNT 623 (703)
Q Consensus 546 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~ 623 (703)
.+..+++|++|++++|......+..+..+++|++|++++|......+..+..+++|++|++++| .+..++... .+++
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCc
Confidence 4555666777777776544444444556677777777776444333345566777777777776 444555432 3566
Q ss_pred ccEEEeccCCCCccccc-ccCCCCCcceEeeccCCCcccCCCCCC--CCCcCeEEEecCCC
Q 046587 624 ISRVGIGECDKLEALPN-DLHKINSLRYLSIQLCRNLVSFPEEGF--PTSLTSLRIGDFKM 681 (703)
Q Consensus 624 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 681 (703)
|+.|++++| .++.+|. .+..+++|++|++++| .++.++...+ +++|+.|++++|+.
T Consensus 133 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 133 LKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 777777774 4555554 4666777777777777 6666665422 56777777777653
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=1.1e-13 Score=150.79 Aligned_cols=99 Identities=17% Similarity=0.278 Sum_probs=65.4
Q ss_pred cCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEe
Q 046587 188 PKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLD 267 (703)
Q Consensus 188 ~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 267 (703)
..++.|+.|++++|.+..+| .++.+++|++|+|++|.+..+|. ++.+++|+.|+|++| .+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 34566777777777776665 46777777777777777776665 677777777777776 455555 467777777777
Q ss_pred ecCccccccCCccCCCCCCCcccCe
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLSN 292 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~~ 292 (703)
+++|.+ ..+ ..++.+++|+.|++
T Consensus 116 Ls~N~l-~~l-~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 116 LEHNGI-SDI-NGLVHLPQLESLYL 138 (605)
T ss_dssp CTTSCC-CCC-GGGGGCTTCSEEEC
T ss_pred ecCCCC-CCC-ccccCCCccCEEEC
Confidence 777753 333 24556666666654
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=6.4e-15 Score=150.42 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=57.3
Q ss_pred CCCcccEEecCCCCCCc--cCccccCCCcCceEeccCCCCc-cccccccccccCcEEecCCCCCCc--ccCccccCCCcc
Q 046587 189 KFRRLRMLSLQGYCIGE--LPMSFEDLRLLRLLNLADTDIR-SLPESTCTLLNLEILILRNCSRLI--KLPPKMRNLINL 263 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~~--lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L 263 (703)
.+++|++|++++|.+.. +|..+..+++|++|++++|.++ ..|..++++++|++|++++|..+. .+|..+.++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 45666666666665532 4555556666666666666555 445555666666666666654343 244445566666
Q ss_pred cEEeecCc-ccccc-CCccCCCCC-CCcccCe
Q 046587 264 RHLDIRGA-KLLKE-MPFGMKELK-NLQTLSN 292 (703)
Q Consensus 264 ~~L~l~~~-~~~~~-~p~~i~~l~-~L~~L~~ 292 (703)
++|++++| ..... ++..++.++ +|++|++
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 66666666 32221 344445555 5555554
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=3.7e-13 Score=133.62 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=128.7
Q ss_pred ccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccc
Q 046587 158 FNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLL 237 (703)
Q Consensus 158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 237 (703)
...+++|+.|.+.++. ...+ ..+..+++|++|++++|.+..++. ++.+++|++|++++|.++.+|. ++.++
T Consensus 42 ~~~l~~L~~L~l~~~~-----i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-----IKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSC-----CCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCT
T ss_pred hhhcCcccEEEccCCC-----cccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCC
Confidence 3457788888876654 1111 126778999999999999998876 8999999999999999998764 89999
Q ss_pred cCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEeecCCCCCChhhhhhhhccCCce
Q 046587 238 NLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDEL 317 (703)
Q Consensus 238 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l 317 (703)
+|++|++++| .+..++ .+..+++|++|++++|.. ..+ ..++.+++|++|++..+.....
T Consensus 113 ~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~----------------- 171 (291)
T 1h6t_A 113 KLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDI----------------- 171 (291)
T ss_dssp TCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCC-----------------
T ss_pred CCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccc-----------------
Confidence 9999999998 566665 488999999999999964 444 4677888888887543322111
Q ss_pred EEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhhHhhhhcCCCCCCcceEEEeccCCCCCCcccCCCCC
Q 046587 318 CMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVEEHVLEILQPHKCIKKVAIRNYGGARFPHWIGDPSF 397 (703)
Q Consensus 318 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~ 397 (703)
..+..+++|+.|++++|....+|. +.. +
T Consensus 172 -------------------------------------------------~~l~~l~~L~~L~L~~N~i~~l~~-l~~--l 199 (291)
T 1h6t_A 172 -------------------------------------------------VPLAGLTKLQNLYLSKNHISDLRA-LAG--L 199 (291)
T ss_dssp -------------------------------------------------GGGTTCTTCCEEECCSSCCCBCGG-GTT--C
T ss_pred -------------------------------------------------hhhcCCCccCEEECCCCcCCCChh-hcc--C
Confidence 002335667777777777777765 443 8
Q ss_pred CCccEEEEeccCCCC
Q 046587 398 SKMKVLKLENCHNCV 412 (703)
Q Consensus 398 ~~L~~L~l~~~~~~~ 412 (703)
++|+.|++++|....
T Consensus 200 ~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 200 KNLDVLELFSQECLN 214 (291)
T ss_dssp TTCSEEEEEEEEEEC
T ss_pred CCCCEEECcCCcccC
Confidence 899999999887643
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=9.7e-14 Score=135.50 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=32.7
Q ss_pred CCcceEEEeccCCCCCCcccCCCCCCCccEEEEeccCCCCcCCCCCCcCccceeeecccc
Q 046587 373 KCIKKVAIRNYGGARFPHWIGDPSFSKMKVLKLENCHNCVSLPSLGLLSSLKHLAVKGLK 432 (703)
Q Consensus 373 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~l~~~~ 432 (703)
++|+.|++++|....++ .+.. +++|+.|++++|..... +.+..+++|+.|++++|.
T Consensus 128 ~~L~~L~Ls~N~i~~~~-~l~~--l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 128 KNLEILSIRNNKLKSIV-MLGF--LSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCEEECTTSCCCBCG-GGGG--CTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred ccccEEECCCCcCCCCh-HHcc--CCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 34444444444444444 2332 66777777777766443 556677777777777664
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=9.1e-13 Score=122.64 Aligned_cols=145 Identities=14% Similarity=0.221 Sum_probs=70.4
Q ss_pred ccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCc-cCCCCCCCCccEEEe
Q 046587 551 VMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVS-FPERGLPNTISRVGI 629 (703)
Q Consensus 551 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~L~~L~l 629 (703)
++|++|++++|. +..+| .+..+++|++|++++| .+..+ ..+..+++|++|++++|..-.. ......+++|+.|++
T Consensus 44 ~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 335555555542 23444 3334555555555555 33333 2445555555555555532221 222223455555555
Q ss_pred ccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCCCCCcCeEEEecCCCCccccccCcCCCCceeeEEec
Q 046587 630 GECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIV 702 (703)
Q Consensus 630 ~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~ 702 (703)
++|......|..+..+++|++|++++|+.++.++....+++|+.|++++|. ++.++ .+.++++|+.|+++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~--~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR--GIEDFPKLNQLYAF 189 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT--TGGGCSSCCEEEEC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH--HhccCCCCCEEEee
Confidence 554433334455555555666666655435555432334555666665553 23233 24555555555554
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=1.1e-14 Score=151.57 Aligned_cols=246 Identities=15% Similarity=0.129 Sum_probs=160.8
Q ss_pred ccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCc----cCccc-------cCCCcCceEeccCC
Q 046587 156 KVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGE----LPMSF-------EDLRLLRLLNLADT 224 (703)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~----lp~~i-------~~l~~L~~L~L~~~ 224 (703)
..+..+++|+.|.+.++.-.. .....+...+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGT-EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECH-HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCCCCCH-HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 345667888999887764111 1111234457789999999999986553 34433 68899999999999
Q ss_pred CCcc-----ccccccccccCcEEecCCCCCCc----ccCccccCC---------CcccEEeecCcccc-ccCC---ccCC
Q 046587 225 DIRS-----LPESTCTLLNLEILILRNCSRLI----KLPPKMRNL---------INLRHLDIRGAKLL-KEMP---FGMK 282 (703)
Q Consensus 225 ~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~~~-~~~p---~~i~ 282 (703)
.++. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|... ..+| ..++
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 9885 77888999999999999984322 223334444 89999999999754 3344 3466
Q ss_pred CCCCCcccCeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccccccccceEEccCCCCCCCCchhh
Q 046587 283 ELKNLQTLSNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEKHNLEALTLDWGSQFDNSRDGVVE 362 (703)
Q Consensus 283 ~l~~L~~L~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 362 (703)
.+++|++|++..+..... .+ ....+..+..+++|+.|+++++. ......
T Consensus 185 ~~~~L~~L~L~~n~l~~~-----g~---------------------~~l~~~~l~~~~~L~~L~Ls~n~-----l~~~g~ 233 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPE-----GI---------------------EHLLLEGLAYCQELKVLDLQDNT-----FTHLGS 233 (386)
T ss_dssp HCTTCCEEECCSSCCCHH-----HH---------------------HHHHHTTGGGCTTCCEEECCSSC-----CHHHHH
T ss_pred hCCCcCEEECcCCCCCHh-----HH---------------------HHHHHHHhhcCCCccEEECcCCC-----CCcHHH
Confidence 777888877644422100 00 00112245667788888887654 111111
Q ss_pred HhhhhcCCCCCCcceEEEeccCCCCC-----CcccCCCCCCCccEEEEeccCCCC----cCC-CC-CCcCccceeeeccc
Q 046587 363 EHVLEILQPHKCIKKVAIRNYGGARF-----PHWIGDPSFSKMKVLKLENCHNCV----SLP-SL-GLLSSLKHLAVKGL 431 (703)
Q Consensus 363 ~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~~~~L~~L~l~~~~~~~----~l~-~l-~~l~~L~~L~l~~~ 431 (703)
..+...+..+++|+.|++++|..... |.++....+++|+.|++++|.... .+| .+ ..+++|++|++++|
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 33455667788899999988876543 455422237889999999998765 254 34 55799999999988
Q ss_pred cc
Q 046587 432 KK 433 (703)
Q Consensus 432 ~~ 433 (703)
..
T Consensus 314 ~l 315 (386)
T 2ca6_A 314 RF 315 (386)
T ss_dssp BS
T ss_pred cC
Confidence 63
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.9e-12 Score=139.38 Aligned_cols=90 Identities=24% Similarity=0.338 Sum_probs=67.7
Q ss_pred cccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCc
Q 046587 192 RLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGA 271 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 271 (703)
+|++|++++|.++.+|..+. .+|++|+|++|.++.+| +.+++|++|++++| .+..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 78888888888888887663 78888888888888887 45788888888887 5666777 655 8888888888
Q ss_pred cccccCCccCCCCCCCcccCeeE
Q 046587 272 KLLKEMPFGMKELKNLQTLSNFI 294 (703)
Q Consensus 272 ~~~~~~p~~i~~l~~L~~L~~~~ 294 (703)
. +..+|. .+++|+.|++..
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADN 149 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCS
T ss_pred c-CCCCCC---cCccccEEeCCC
Confidence 5 344665 466677666543
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=4e-15 Score=153.25 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=54.7
Q ss_pred hhhhhcCCCcccEEecCCCCCCccC-----ccccCCC-cCceEeccCCCCccc-ccccccc-----ccCcEEecCCCCCC
Q 046587 183 LSDLLPKFRRLRMLSLQGYCIGELP-----MSFEDLR-LLRLLNLADTDIRSL-PESTCTL-----LNLEILILRNCSRL 250 (703)
Q Consensus 183 ~~~~~~~l~~Lr~L~L~~~~l~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~~l 250 (703)
.+.++...+.|++|++++|.++..+ ..+..++ +|++|+|++|.++.. +..++.+ ++|++|+|++|. +
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 92 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-L 92 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-C
Confidence 3444555556777777777776664 4556666 677777777777644 4445544 777777777763 4
Q ss_pred cccC-cc----ccCC-CcccEEeecCcc
Q 046587 251 IKLP-PK----MRNL-INLRHLDIRGAK 272 (703)
Q Consensus 251 ~~lp-~~----i~~L-~~L~~L~l~~~~ 272 (703)
...+ .. +..+ ++|++|++++|.
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 4333 22 3333 677777777764
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=1.5e-12 Score=124.23 Aligned_cols=129 Identities=22% Similarity=0.347 Sum_probs=106.2
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCc-cccCCCcCceEeccCCCCcccccc-ccccccC
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPM-SFEDLRLLRLLNLADTDIRSLPES-TCTLLNL 239 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L 239 (703)
++|+.|.+.++. ...+.+..|..+++|++|+|++|.++.+|. .|..+.+|++|+|++|.++.+|.. +..+++|
T Consensus 40 ~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQ-----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCCc-----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 788888887765 334456678889999999999999988875 468999999999999999988765 6889999
Q ss_pred cEEecCCCCCCcccCccccCCCcccEEeecCccccccCC-ccCCCCCCCcccCeeEeec
Q 046587 240 EILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMP-FGMKELKNLQTLSNFIVGK 297 (703)
Q Consensus 240 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~ 297 (703)
++|++++| .+..+|..+..+++|++|++++|.. ..+| ..+..+++|+.|++..+..
T Consensus 115 ~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 115 KELFMCCN-KLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CeEeccCC-cccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999997 6789999899999999999999964 4555 4478888998887765543
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=1.5e-12 Score=141.90 Aligned_cols=123 Identities=21% Similarity=0.277 Sum_probs=96.1
Q ss_pred ccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccc
Q 046587 158 FNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLL 237 (703)
Q Consensus 158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 237 (703)
...+++|+.|.+.++. ...+ + .+..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+..+| .++.++
T Consensus 39 ~~~L~~L~~L~l~~n~-----i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-----IKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTCC-----CCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCT
T ss_pred hhcCCCCCEEECcCCC-----CCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCC
Confidence 4456778888776654 1111 1 37788999999999999988876 899999999999999999876 789999
Q ss_pred cCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCee
Q 046587 238 NLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNF 293 (703)
Q Consensus 238 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 293 (703)
+|++|+|++| .+..+|. +..+++|+.|+|++|.. ..+ ..++.+++|+.|++.
T Consensus 110 ~L~~L~Ls~N-~l~~l~~-l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 110 KLKSLSLEHN-GISDING-LVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TCCEEECTTS-CCCCCGG-GGGCTTCSEEECCSSCC-CCC-GGGGSCTTCSEEECC
T ss_pred CCCEEEecCC-CCCCCcc-ccCCCccCEEECCCCcc-CCc-hhhcccCCCCEEECc
Confidence 9999999998 5666654 89999999999999963 344 456667777766653
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=1.4e-12 Score=123.47 Aligned_cols=129 Identities=25% Similarity=0.316 Sum_probs=103.7
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCcc-CccccCCCcCceEeccCCCCcccccc-ccccccC
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSLPES-TCTLLNL 239 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L 239 (703)
++++.|.+.++. ...+.+..|..+++|++|+|++|.+..+ |..|..+.+|++|+|++|.++.+|.. +.++++|
T Consensus 32 ~~l~~L~l~~n~-----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNT-----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSC-----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCEEECCCCc-----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 578888887765 3345556788899999999999999887 77899999999999999999998876 5889999
Q ss_pred cEEecCCCCCCccc-CccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEee
Q 046587 240 EILILRNCSRLIKL-PPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVG 296 (703)
Q Consensus 240 ~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 296 (703)
++|+|++|. +..+ |..+..+++|++|++++|.+....+..+..+++|++|++..+.
T Consensus 107 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 107 QLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 999999984 5554 5678999999999999997544444458888999888765544
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=5.3e-12 Score=120.41 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=49.4
Q ss_pred cEEecCCCCCCccCccccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccCcc-ccCCCcccEEeecCc
Q 046587 194 RMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLPPK-MRNLINLRHLDIRGA 271 (703)
Q Consensus 194 r~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 271 (703)
+.++.+++.++.+|..+. .+|++|+|++|.++.+ |..++++++|++|+|++| .+..+|.. +..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 456666666666766554 6677777777777655 455667777777777776 45555533 466777777777766
Q ss_pred c
Q 046587 272 K 272 (703)
Q Consensus 272 ~ 272 (703)
.
T Consensus 99 ~ 99 (229)
T 3e6j_A 99 Q 99 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1e-12 Score=118.96 Aligned_cols=132 Identities=21% Similarity=0.238 Sum_probs=99.4
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCcc-ccccccccccCc
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRS-LPESTCTLLNLE 240 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~ 240 (703)
++++.|.+.++. +.....+..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..++.+++|+
T Consensus 24 ~~L~~L~l~~n~----l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCK----SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCB----CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCC----CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 567777766554 11122344467788899999999988877 778888999999999998887 677777789999
Q ss_pred EEecCCCCCCcccC--ccccCCCcccEEeecCccccccCCc----cCCCCCCCcccCeeEeecCCC
Q 046587 241 ILILRNCSRLIKLP--PKMRNLINLRHLDIRGAKLLKEMPF----GMKELKNLQTLSNFIVGKGET 300 (703)
Q Consensus 241 ~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~~~~~ 300 (703)
+|++++| .+..+| ..++.+++|++|++++|. +..+|. .+..+++|++|++..+...+.
T Consensus 99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999987 667765 568889999999999886 445554 688888888888776654443
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=2.2e-12 Score=138.98 Aligned_cols=89 Identities=25% Similarity=0.289 Sum_probs=68.3
Q ss_pred CcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecC
Q 046587 191 RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRG 270 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 270 (703)
++|++|++++|.++.+| +.+++|++|++++|.++.+|. +++ +|++|++++| .+..+|. .+++|++|++++
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC
Confidence 57888888888888888 457888888888888888887 665 8888888887 5666777 678888888888
Q ss_pred ccccccCCccCCCCCCCcccCee
Q 046587 271 AKLLKEMPFGMKELKNLQTLSNF 293 (703)
Q Consensus 271 ~~~~~~~p~~i~~l~~L~~L~~~ 293 (703)
|. +..+|. .+++|++|++.
T Consensus 150 N~-l~~lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 150 NQ-LTMLPE---LPTSLEVLSVR 168 (571)
T ss_dssp SC-CSCCCC---CCTTCCEEECC
T ss_pred Cc-cCcCCC---cCCCcCEEECC
Confidence 86 444665 45666666543
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=6.5e-14 Score=144.16 Aligned_cols=241 Identities=12% Similarity=0.071 Sum_probs=141.5
Q ss_pred ccccCC-CceeEeeeccCCCCcccchhhhhhhhcCCC-cccEEecCCCCCCcc-CccccCC-----CcCceEeccCCCCc
Q 046587 156 KVFNEI-EHLRTFLPLHERRGYYIPRTVLSDLLPKFR-RLRMLSLQGYCIGEL-PMSFEDL-----RLLRLLNLADTDIR 227 (703)
Q Consensus 156 ~~~~~~-~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~l-p~~i~~l-----~~L~~L~L~~~~i~ 227 (703)
+.+... ++|+.|.+.++. ........+...+..++ .|++|++++|.++.. +..+..+ .+|++|+|++|.++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 344444 459999998775 11122222336678888 899999999998766 4556554 89999999999998
Q ss_pred ccc-cc----cccc-ccCcEEecCCCCCCcccCc-cc----cC-CCcccEEeecCccccc----cCCccCCCCC-CCccc
Q 046587 228 SLP-ES----TCTL-LNLEILILRNCSRLIKLPP-KM----RN-LINLRHLDIRGAKLLK----EMPFGMKELK-NLQTL 290 (703)
Q Consensus 228 ~lp-~~----i~~L-~~L~~L~L~~~~~l~~lp~-~i----~~-L~~L~~L~l~~~~~~~----~~p~~i~~l~-~L~~L 290 (703)
..+ .. +..+ ++|++|++++|. +...+. .+ .. .++|++|++++|.... .++..+..++ +|++|
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 554 33 4444 899999999984 555543 33 34 3699999999996543 2333344444 77777
Q ss_pred CeeEeecCCCCCChhhhhhhhccCCceEEeCccccCChhchhhhhcccc-cccccceEEccCCCCCCCCchhhHhhhhcC
Q 046587 291 SNFIVGKGETASGLEDLKCLNFLCDELCMSGLENVNNPQNAREATVCEK-HNLEALTLDWGSQFDNSRDGVVEEHVLEIL 369 (703)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 369 (703)
++..+..... ........+... .+|+.|+++++.-. ......+...+
T Consensus 173 ~Ls~n~l~~~---------------------------~~~~l~~~l~~~~~~L~~L~Ls~N~i~-----~~~~~~l~~~l 220 (362)
T 3goz_A 173 NLRGNNLASK---------------------------NCAELAKFLASIPASVTSLDLSANLLG-----LKSYAELAYIF 220 (362)
T ss_dssp ECTTSCGGGS---------------------------CHHHHHHHHHTSCTTCCEEECTTSCGG-----GSCHHHHHHHH
T ss_pred eecCCCCchh---------------------------hHHHHHHHHHhCCCCCCEEECCCCCCC-----hhHHHHHHHHH
Confidence 6543322110 011122234444 47777777655411 11111223333
Q ss_pred CC-CCCcceEEEeccCCCCCCc-----ccCCCCCCCccEEEEeccCCCCc-------C-CCCCCcCccceeeecccc
Q 046587 370 QP-HKCIKKVAIRNYGGARFPH-----WIGDPSFSKMKVLKLENCHNCVS-------L-PSLGLLSSLKHLAVKGLK 432 (703)
Q Consensus 370 ~~-~~~L~~L~l~~~~~~~~p~-----~~~~~~~~~L~~L~l~~~~~~~~-------l-~~l~~l~~L~~L~l~~~~ 432 (703)
.. .++|+.|++++|.....+. .+. .+++|+.|++++|..... + ..+..+++|+.|++++|.
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~--~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKD--SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTT--TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHh--cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 33 3467777777776655432 122 256677777777652111 1 135566667777776665
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=3.6e-12 Score=119.86 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=33.3
Q ss_pred EEecCCCCCCccCccccCCCcCceEeccCCCCcccccc-ccccccCcEEecCCCCCCcccCcc-ccCCCcccEEeecCc
Q 046587 195 MLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPES-TCTLLNLEILILRNCSRLIKLPPK-MRNLINLRHLDIRGA 271 (703)
Q Consensus 195 ~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 271 (703)
.++.+++.+..+|..+ ..+|++|++++|.++.+|.. ++++++|++|++++| .+..+|.. +..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 3444444444444333 23455555555554444432 344555555555544 33333322 344555555555544
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=1.3e-12 Score=127.54 Aligned_cols=141 Identities=22% Similarity=0.299 Sum_probs=65.0
Q ss_pred cccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCCCCCCCccEEEe
Q 046587 550 PVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPERGLPNTISRVGI 629 (703)
Q Consensus 550 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 629 (703)
+++|++|++++| .++.++ .+..+++|++|++++| .++.++. +..+++|++|++++| .+..++.... ++|+.|++
T Consensus 40 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~L 113 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS-ACLSRLFL 113 (263)
T ss_dssp HTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC-SSCCEEEC
T ss_pred cCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc-CcccEEEc
Confidence 334555555554 233343 3334455555555554 2333333 455555555555554 3333333222 45555555
Q ss_pred ccCCCCcccccccCCCCCcceEeeccCCCcccCCCCCCCCCcCeEEEecCCCCccccccCcCCCCceeeEEec
Q 046587 630 GECDKLEALPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSLTSLRIGDFKMYKTLVQWGLHRLTSLGRLYIV 702 (703)
Q Consensus 630 ~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~l~~l~~L~~L~l~ 702 (703)
++| .++.+| .+..+++|+.|++++| .++.++..+.+++|+.|++++|.. +.+ ..+.++++|+.|+++
T Consensus 114 ~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~l~~l~~L~~L~L~~N~i-~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 114 DNN-ELRDTD-SLIHLKNLEILSIRNN-KLKSIVMLGFLSKLEVLDLHGNEI-TNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp CSS-CCSBSG-GGTTCTTCCEEECTTS-CCCBCGGGGGCTTCCEEECTTSCC-CBC--TTSTTCCCCCEEEEE
T ss_pred cCC-ccCCCh-hhcCcccccEEECCCC-cCCCChHHccCCCCCEEECCCCcC-cch--HHhccCCCCCEEeCC
Confidence 553 344443 3445555555555555 444444223345555555555432 222 124555555555543
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=7.8e-12 Score=118.38 Aligned_cols=95 Identities=22% Similarity=0.336 Sum_probs=60.0
Q ss_pred cEEecCCCCCCccCccccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccCccccCCCcccEEeecCcc
Q 046587 194 RMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAK 272 (703)
Q Consensus 194 r~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 272 (703)
+.++++++.++.+|..+. .+|++|++++|.|+.+|. .+..+++|++|+|++|......|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456777777777776654 567777777777776654 56777777777777763333335667777777777777774
Q ss_pred ccccCCcc-CCCCCCCcccC
Q 046587 273 LLKEMPFG-MKELKNLQTLS 291 (703)
Q Consensus 273 ~~~~~p~~-i~~l~~L~~L~ 291 (703)
+..+|.. ++.+++|++|+
T Consensus 92 -l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEEE
T ss_pred -CCccCHhHccCCCCCCEEE
Confidence 3344433 34444444443
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=3.8e-12 Score=120.57 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=102.3
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCc-cccCCCcCceEeccCCCCcccccc-ccccccC
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPM-SFEDLRLLRLLNLADTDIRSLPES-TCTLLNL 239 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L 239 (703)
..++.|.+.++. +........|..+++|++|++++|.++.++. .|+.+.+|++|+|++|.++.+|.. ++.+++|
T Consensus 32 ~~~~~L~L~~N~----l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNE----FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSC----CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCCCEEEcCCCc----CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 345677776664 1111123457889999999999999988865 789999999999999999987754 8899999
Q ss_pred cEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCCCCCCCcccCeeEee
Q 046587 240 EILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVG 296 (703)
Q Consensus 240 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 296 (703)
++|+|++|......|..+..+++|++|++++|.+....|..++.+++|++|++..+.
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 999999984433446778999999999999997655557778999999988876554
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=1.4e-12 Score=115.33 Aligned_cols=125 Identities=22% Similarity=0.275 Sum_probs=92.4
Q ss_pred CCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCcc-ccccccccccC
Q 046587 161 IEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRS-LPESTCTLLNL 239 (703)
Q Consensus 161 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L 239 (703)
.++++.|.+.++. +.....+..+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..++++++|
T Consensus 16 ~~~l~~L~l~~n~----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSR----SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCB----CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCc----CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 3567777766654 11122334567788889999988888777 678888889999999888886 77777778889
Q ss_pred cEEecCCCCCCcccC--ccccCCCcccEEeecCccccccCCc----cCCCCCCCcccCe
Q 046587 240 EILILRNCSRLIKLP--PKMRNLINLRHLDIRGAKLLKEMPF----GMKELKNLQTLSN 292 (703)
Q Consensus 240 ~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 292 (703)
++|++++| .+..+| ..++.+++|++|++++|.. ..+|. .++.+++|+.|++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETT
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccC
Confidence 99999887 466654 6688888899999988864 44444 4777888887764
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=1.1e-11 Score=116.57 Aligned_cols=129 Identities=24% Similarity=0.310 Sum_probs=98.1
Q ss_pred CCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCcc-ccCCCcCceEeccCCCCcccccc-cccccc
Q 046587 161 IEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMS-FEDLRLLRLLNLADTDIRSLPES-TCTLLN 238 (703)
Q Consensus 161 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~ 238 (703)
.++++.|.+.++. ...+.+..|..+++|++|++++|.++.+|.. |..+++|++|++++|.++.+|.. ++++++
T Consensus 27 ~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNS-----LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEEcCCCc-----cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 3577888777664 2244455678888999999999998888654 68889999999999998888765 688999
Q ss_pred CcEEecCCCCCCcccCcc-ccCCCcccEEeecCccccccCCcc-CCCCCCCcccCeeEee
Q 046587 239 LEILILRNCSRLIKLPPK-MRNLINLRHLDIRGAKLLKEMPFG-MKELKNLQTLSNFIVG 296 (703)
Q Consensus 239 L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~ 296 (703)
|++|++++| .+..+|.. +.++++|++|++++|... .+|.. ++.+++|++|++..+.
T Consensus 102 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 102 LKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCC
Confidence 999999987 56666654 688999999999988644 44444 7788888888765553
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=4.3e-12 Score=130.32 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=36.0
Q ss_pred CCCcceEEEeccCCCCCCcccCC--CCCCCccEEEEeccCCCCcCC-CCCCcCc--cceeeecccc
Q 046587 372 HKCIKKVAIRNYGGARFPHWIGD--PSFSKMKVLKLENCHNCVSLP-SLGLLSS--LKHLAVKGLK 432 (703)
Q Consensus 372 ~~~L~~L~l~~~~~~~~p~~~~~--~~~~~L~~L~l~~~~~~~~l~-~l~~l~~--L~~L~l~~~~ 432 (703)
+++|+.|++++|....+|..+.. ..+++|+.|++++|.+....+ .+..++. ++.|++.+|.
T Consensus 135 l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 44555555666666666655421 136788888888877643222 3455565 4778887765
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=5.6e-12 Score=141.11 Aligned_cols=115 Identities=22% Similarity=0.219 Sum_probs=100.0
Q ss_pred hhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCC
Q 046587 182 VLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLI 261 (703)
Q Consensus 182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 261 (703)
.+++.|..++.|++|+|++|.+..+|..+..+.+|++|+|++|.|+.+|..|++|.+|++|+|++| .+..+|..|++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 456778899999999999999999999999999999999999999999999999999999999998 5779999999999
Q ss_pred cccEEeecCccccccCCccCCCCCCCcccCeeEeecC
Q 046587 262 NLRHLDIRGAKLLKEMPFGMKELKNLQTLSNFIVGKG 298 (703)
Q Consensus 262 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~ 298 (703)
+|++|+|++|. +..+|.+++.+++|++|++..+...
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccC
Confidence 99999999996 5689999999999999987666543
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=5.6e-12 Score=114.91 Aligned_cols=132 Identities=19% Similarity=0.179 Sum_probs=103.5
Q ss_pred ccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccc-c
Q 046587 156 KVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPEST-C 234 (703)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~ 234 (703)
..+..+.+|+.|.+.++.- ..+ +......++|++|++++|.++.+ ..++.+++|++|++++|.++.+|+.+ +
T Consensus 13 ~~~~~~~~L~~L~l~~n~l-----~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI-----PVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp CEEECTTSCEEEECTTSCC-----CSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred HhcCCcCCceEEEeeCCCC-----chh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 3455678888888877651 111 22223334899999999999888 67899999999999999999888665 8
Q ss_pred ccccCcEEecCCCCCCcccCc--cccCCCcccEEeecCccccccCCcc----CCCCCCCcccCeeEee
Q 046587 235 TLLNLEILILRNCSRLIKLPP--KMRNLINLRHLDIRGAKLLKEMPFG----MKELKNLQTLSNFIVG 296 (703)
Q Consensus 235 ~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~~ 296 (703)
.+++|++|++++| .+..+|. .++.+++|++|++++|.. ..+|.. ++.+++|+.|++..+.
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999998 6788886 788999999999999964 566764 7888999988876554
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=1.7e-11 Score=116.00 Aligned_cols=133 Identities=14% Similarity=0.190 Sum_probs=108.0
Q ss_pred CCceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCc-cccCCC
Q 046587 136 FERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPM-SFEDLR 214 (703)
Q Consensus 136 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~l~ 214 (703)
+..++.+.+..+..........+..+++|+.|.+.++. ...+.+..|..+++|++|+|++|.+..+|. .|+.+.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-----ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-----CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence 34556777766654433233447789999999998776 344556678999999999999999988865 589999
Q ss_pred cCceEeccCCCCccc-cccccccccCcEEecCCCCCCccc-CccccCCCcccEEeecCcccc
Q 046587 215 LLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKL-PPKMRNLINLRHLDIRGAKLL 274 (703)
Q Consensus 215 ~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~ 274 (703)
+|++|+|++|.++.+ |..+..+++|++|+|++| .+..+ |..+..+++|++|++++|...
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999999999999977 677999999999999998 45555 778999999999999999644
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=8.4e-12 Score=112.84 Aligned_cols=107 Identities=24% Similarity=0.254 Sum_probs=91.6
Q ss_pred CCCcccEEecCCCCCC--ccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEE
Q 046587 189 KFRRLRMLSLQGYCIG--ELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHL 266 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 266 (703)
..+.|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++++++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4478999999999998 8999999999999999999999988 789999999999999985444478777889999999
Q ss_pred eecCccccccCC--ccCCCCCCCcccCeeEeec
Q 046587 267 DIRGAKLLKEMP--FGMKELKNLQTLSNFIVGK 297 (703)
Q Consensus 267 ~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~~~ 297 (703)
++++|. +..+| ..++.+++|++|++..+..
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 999996 45555 5788999999998765543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=5e-12 Score=111.74 Aligned_cols=109 Identities=22% Similarity=0.245 Sum_probs=92.4
Q ss_pred CCCcccEEecCCCCCC--ccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEE
Q 046587 189 KFRRLRMLSLQGYCIG--ELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHL 266 (703)
Q Consensus 189 ~l~~Lr~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 266 (703)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 8899999999999999999999988 789999999999999985433478778889999999
Q ss_pred eecCccccccCC--ccCCCCCCCcccCeeEeecCC
Q 046587 267 DIRGAKLLKEMP--FGMKELKNLQTLSNFIVGKGE 299 (703)
Q Consensus 267 ~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~~~~~ 299 (703)
++++|.. ..+| ..++.+++|++|++..+....
T Consensus 94 ~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 94 NLSGNKI-KDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ECTTSCC-CSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ECCCCcC-CChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 9999974 4433 678999999999876655433
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=6e-11 Score=121.77 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=67.3
Q ss_pred CcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccCCC--CCCCCccE
Q 046587 549 SPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFPER--GLPNTISR 626 (703)
Q Consensus 549 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~ 626 (703)
.+++|++|++++|......+..+..+++|++|+|++|......+..+.++++|+.|++++|. +..++.. ..+++|+.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCE
Confidence 45556666666664333223345556666666666664322223345666666666666663 3333221 22456666
Q ss_pred EEeccCCCCccccccc----CCCCCcceEeeccCCCcccCCCCCC--CCC--cCeEEEecCC
Q 046587 627 VGIGECDKLEALPNDL----HKINSLRYLSIQLCRNLVSFPEEGF--PTS--LTSLRIGDFK 680 (703)
Q Consensus 627 L~l~~c~~l~~lp~~~----~~l~~L~~L~l~~c~~l~~l~~~~~--~~~--L~~L~i~~c~ 680 (703)
|++++| .++.+|..+ ..+++|+.|++++| .++.+|...+ +++ ++.|++++|+
T Consensus 141 L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 141 LYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred EECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 666663 455555443 34666666666666 5555553311 233 3566666655
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=3.1e-11 Score=111.56 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=82.2
Q ss_pred cccEEecCCCCCCccCcc--ccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccC-ccccCCCcccEEe
Q 046587 192 RLRMLSLQGYCIGELPMS--FEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLD 267 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~--i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 267 (703)
.|++|++++|.++.++.. ++.+++|++|+|++|.++.+ |..++++.+|++|+|++| .+..+| ..++++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 788888888888888653 78888888888888888866 667888888888888887 455554 4478888888888
Q ss_pred ecCccccccCCccCCCCCCCcccCeeEee
Q 046587 268 IRGAKLLKEMPFGMKELKNLQTLSNFIVG 296 (703)
Q Consensus 268 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 296 (703)
+++|.+....|..++.+++|++|++..+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 88887666667778888888888765544
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=2.4e-11 Score=110.68 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=91.5
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCC-cCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccc-cCCCccc
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLR-LLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKM-RNLINLR 264 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 264 (703)
+..+..|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++| .+..+|..+ +.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 5567899999999999998865 55555 999999999999988 68999999999999998 677888665 8999999
Q ss_pred EEeecCccccccCCc--cCCCCCCCcccCeeEeecC
Q 046587 265 HLDIRGAKLLKEMPF--GMKELKNLQTLSNFIVGKG 298 (703)
Q Consensus 265 ~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~ 298 (703)
+|++++|. +..+|. .++.+++|+.|++..+...
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 99999996 466776 6888999999887665543
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=3.6e-11 Score=130.25 Aligned_cols=106 Identities=23% Similarity=0.220 Sum_probs=91.1
Q ss_pred cccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCcccEEeecCc
Q 046587 192 RLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGA 271 (703)
Q Consensus 192 ~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 271 (703)
.|++|++++|.++.+|. ++.+++|++|+|++|.++.+|..++++++|++|+|++| .+..+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 47889999999999986 99999999999999999999999999999999999997 677788 7999999999999999
Q ss_pred cccccC-CccCCCCCCCcccCeeEeecCCC
Q 046587 272 KLLKEM-PFGMKELKNLQTLSNFIVGKGET 300 (703)
Q Consensus 272 ~~~~~~-p~~i~~l~~L~~L~~~~~~~~~~ 300 (703)
.+.... |..++.+++|+.|++..+.....
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 754443 88899999999998776655443
No 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.16 E-value=2.1e-11 Score=134.76 Aligned_cols=94 Identities=14% Similarity=0.242 Sum_probs=79.9
Q ss_pred ChHHHHHHHhhcCcCCCCCCCchHHHHHhhccCchhh-hhHhhhhcCCCCCCccCHHHHHHHHHHCCCCccCCCCchHHH
Q 046587 2 RHDAWDDILDSKIWDLPQQSGVLPVLRLSYHHLPSHL-KRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLED 80 (703)
Q Consensus 2 ~~~~W~~~l~~~~~~~~~~~~i~~~L~lSYd~L~~~~-K~cFL~~a~fp~~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~ 80 (703)
+.++|+.+ . ...|..+|++||+.||+++ |.||+|||+||+++.|+++.++.+|+++| ++
T Consensus 343 s~eeW~~~--------~-~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 343 TWDNWKHV--------N-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp SHHHHHHC--------S-CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred CHHHHhcC--------C-hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HH
Confidence 34677654 1 2569999999999999998 99999999999999999999999999987 13
Q ss_pred HHHHHHHHHHhCCCccccCCCCCceeeCcHHHHHHH
Q 046587 81 LGGKCFHDLVSRSIFPQTSSGSSKFVMHDLIHDLAE 116 (703)
Q Consensus 81 ~~~~~~~~L~~~~ll~~~~~~~~~~~mHdlv~d~a~ 116 (703)
.++.++++|+++||++.. +...+|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHhc
Confidence 478899999999999985 34568999999999663
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=6.4e-11 Score=128.30 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=88.8
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCccc--CccccCCCccc
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKL--PPKMRNLINLR 264 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~ 264 (703)
+..+++|++|+|++|.++.+|..|+.+++|++|+|++|.++.+| .++++++|++|+|++| .+..+ |..++.+++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCC
Confidence 78899999999999999999999999999999999999999998 8999999999999998 56666 88999999999
Q ss_pred EEeecCccccccCCccCC----CCCCCccc
Q 046587 265 HLDIRGAKLLKEMPFGMK----ELKNLQTL 290 (703)
Q Consensus 265 ~L~l~~~~~~~~~p~~i~----~l~~L~~L 290 (703)
+|++++|.. ...|..+. .+++|+.|
T Consensus 537 ~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 537 LLNLQGNSL-CQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECTTSGG-GGSSSCTTHHHHHCTTCSEE
T ss_pred EEEecCCcC-CCCccHHHHHHHHCcccCcc
Confidence 999999974 44454433 36677665
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=9.7e-11 Score=108.15 Aligned_cols=104 Identities=27% Similarity=0.400 Sum_probs=81.7
Q ss_pred CcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccC-ccccCCCcccEEee
Q 046587 191 RRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDI 268 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 268 (703)
+.|++|++++|.++.+|..|..+.+|++|+|++|.|+.++. .|.++++|++|+|++| .+..+| ..|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 46888899988888888888888899999999998887764 5888889999999987 455555 45888889999999
Q ss_pred cCccccccCCcc-CCCCCCCcccCeeEee
Q 046587 269 RGAKLLKEMPFG-MKELKNLQTLSNFIVG 296 (703)
Q Consensus 269 ~~~~~~~~~p~~-i~~l~~L~~L~~~~~~ 296 (703)
++|. +..+|.. +..+++|+.|++..+.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 8886 4455554 7778888888765443
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=3.5e-11 Score=134.72 Aligned_cols=120 Identities=23% Similarity=0.300 Sum_probs=100.6
Q ss_pred ccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccc
Q 046587 156 KVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCT 235 (703)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~ 235 (703)
..+..++.|+.|.+.++.- ..++.. +..+++|++|+|++|.++.+|..|+.+.+|++|+|++|.|+.+|..+++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l-----~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQI-----FNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ----CCCCCCEEECTTSCC-----SCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hhhccCCCCcEEECCCCCC-----CCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 3466788999999987761 222223 3478999999999999999999999999999999999999999999999
Q ss_pred cccCcEEecCCCCCCcccCccccCCCcccEEeecCccccccCCccCC
Q 046587 236 LLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGAKLLKEMPFGMK 282 (703)
Q Consensus 236 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 282 (703)
|.+|++|+|++| .+..+|..|++|++|++|+|++|.+...+|..++
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 999999999998 6789999999999999999999986666665543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=1.6e-10 Score=106.71 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=88.0
Q ss_pred cEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccC-ccccCCCcccEEeecCcc
Q 046587 194 RMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIRGAK 272 (703)
Q Consensus 194 r~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 272 (703)
++++++++.++.+|..+. .+|++|++++|.++.+|..+.++++|++|++++| .+..++ ..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999998765 6899999999999999999999999999999998 566665 569999999999999997
Q ss_pred ccccCCccCCCCCCCcccCeeEeecCC
Q 046587 273 LLKEMPFGMKELKNLQTLSNFIVGKGE 299 (703)
Q Consensus 273 ~~~~~p~~i~~l~~L~~L~~~~~~~~~ 299 (703)
+....|..++.+++|++|++..+....
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 555445569999999999876665443
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=1.5e-10 Score=106.91 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=86.6
Q ss_pred cEEecCCCCCCccCccccCCCcCceEeccCCCCcccccc--ccccccCcEEecCCCCCCcccCccccCCCcccEEeecCc
Q 046587 194 RMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPES--TCTLLNLEILILRNCSRLIKLPPKMRNLINLRHLDIRGA 271 (703)
Q Consensus 194 r~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 271 (703)
++++++++.++.+|..+.. +|++|++++|.++.+|.. ++.+++|++|+|++|......|..++++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999987764 999999999999988864 899999999999998544444778999999999999999
Q ss_pred cccccCCccCCCCCCCcccCeeEeec
Q 046587 272 KLLKEMPFGMKELKNLQTLSNFIVGK 297 (703)
Q Consensus 272 ~~~~~~p~~i~~l~~L~~L~~~~~~~ 297 (703)
.+....|..++.+++|++|++..+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcC
Confidence 76555555689999999998765543
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=2.6e-10 Score=103.22 Aligned_cols=99 Identities=24% Similarity=0.387 Sum_probs=51.1
Q ss_pred cEEecCCCCCCccCccccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccCcc-ccCCCcccEEeecCc
Q 046587 194 RMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLPPK-MRNLINLRHLDIRGA 271 (703)
Q Consensus 194 r~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 271 (703)
+.++++++.++.+|..+. .+|++|+|++|.++.+ |..++++++|++|+|++| .+..+|.. ++++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 445555555555555443 5555555555555544 334555555555555554 44444443 345555555555555
Q ss_pred cccccCCcc-CCCCCCCcccCeeEee
Q 046587 272 KLLKEMPFG-MKELKNLQTLSNFIVG 296 (703)
Q Consensus 272 ~~~~~~p~~-i~~l~~L~~L~~~~~~ 296 (703)
. +..+|.. ++.+++|++|++..+.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCC
Confidence 3 2333333 5555555555544443
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=5.3e-10 Score=100.83 Aligned_cols=100 Identities=25% Similarity=0.332 Sum_probs=63.4
Q ss_pred ccEEecCCCCCCccCccccCCCcCceEeccCCCCccc-cccccccccCcEEecCCCCCCcccCcc-ccCCCcccEEeecC
Q 046587 193 LRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSL-PESTCTLLNLEILILRNCSRLIKLPPK-MRNLINLRHLDIRG 270 (703)
Q Consensus 193 Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 270 (703)
.++++++++.++.+|..+. .+|++|+|++|.|+.+ |..++++.+|++|+|++| .+..+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 4566777777777766553 6677777777777666 345667777777777776 45555543 46677777777777
Q ss_pred ccccccCCc-cCCCCCCCcccCeeEee
Q 046587 271 AKLLKEMPF-GMKELKNLQTLSNFIVG 296 (703)
Q Consensus 271 ~~~~~~~p~-~i~~l~~L~~L~~~~~~ 296 (703)
|. +..+|. .++.+++|++|++..+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 75 334444 36666777766655544
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=8.1e-10 Score=100.61 Aligned_cols=104 Identities=30% Similarity=0.433 Sum_probs=68.4
Q ss_pred CcccEEecCCCCCCccCc-cccCCCcCceEeccCCCCcccccc-ccccccCcEEecCCCCCCcccCcc-ccCCCcccEEe
Q 046587 191 RRLRMLSLQGYCIGELPM-SFEDLRLLRLLNLADTDIRSLPES-TCTLLNLEILILRNCSRLIKLPPK-MRNLINLRHLD 267 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 267 (703)
+.|++|++++|.++.+|. .++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|.. ++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 467777777777766654 356777777777777777766644 467777777777776 45555543 56777777777
Q ss_pred ecCccccccCCcc-CCCCCCCcccCeeEee
Q 046587 268 IRGAKLLKEMPFG-MKELKNLQTLSNFIVG 296 (703)
Q Consensus 268 l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~ 296 (703)
+++|.. ..+|.. +..+++|++|++..+.
T Consensus 107 l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence 777753 445544 4667777777665443
No 136
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.01 E-value=2.5e-10 Score=137.77 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=78.6
Q ss_pred CchHHHHHhhccCchhhhhHhhhhcCCCCCCccCHHHHHHHHHHCCCCccCCCCchHHHHHHHHHHHHHhCCCccccC-C
Q 046587 22 GVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQTS-S 100 (703)
Q Consensus 22 ~i~~~L~lSYd~L~~~~K~cFL~~a~fp~~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~ 100 (703)
.+..+|++||+.|++++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++... +
T Consensus 363 ~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~ 430 (1249)
T 3sfz_A 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNG 430 (1249)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCC
Confidence 489999999999999999999999999999999999999999654 356888999999999998764 2
Q ss_pred CCCceeeCcHHHHHHHHhhccc
Q 046587 101 GSSKFVMHDLIHDLAELVSRET 122 (703)
Q Consensus 101 ~~~~~~mHdlv~d~a~~i~~~~ 122 (703)
...+|+|||+||++|+..+.++
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGGG
T ss_pred CceEEEecHHHHHHHHhhhhHH
Confidence 3346999999999999987765
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=8.5e-10 Score=100.45 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=90.3
Q ss_pred CCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccCcc-ccCCCcCceEeccCCCCcccccc-cccccc
Q 046587 161 IEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELPMS-FEDLRLLRLLNLADTDIRSLPES-TCTLLN 238 (703)
Q Consensus 161 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~ 238 (703)
.++++.|.+.++. ...+++..|..+++|++|++++|.++.+|.. ++.+.+|++|++++|.++.+|.. ++++++
T Consensus 27 ~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 27 PSSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEEeCCCc-----ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence 3688999887765 2344556688899999999999999888754 68999999999999999988765 689999
Q ss_pred CcEEecCCCCCCcccCcc-ccCCCcccEEeecCcccc
Q 046587 239 LEILILRNCSRLIKLPPK-MRNLINLRHLDIRGAKLL 274 (703)
Q Consensus 239 L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 274 (703)
|++|++++| .+..+|.. +..+++|++|++++|...
T Consensus 102 L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 102 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 999999998 67777765 578999999999999644
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=4.9e-12 Score=117.81 Aligned_cols=84 Identities=26% Similarity=0.288 Sum_probs=39.8
Q ss_pred hcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCc--cccCCCccc
Q 046587 187 LPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPP--KMRNLINLR 264 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~ 264 (703)
+..+++|++|++++|.+..+|..+..+++|++|++++|.++.+| .++.+++|++|++++| .+..+|. .+..+++|+
T Consensus 66 ~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCS
T ss_pred cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCC
Confidence 34444455555555554444444444445555555555544444 3444555555555544 3333332 344455555
Q ss_pred EEeecCcc
Q 046587 265 HLDIRGAK 272 (703)
Q Consensus 265 ~L~l~~~~ 272 (703)
+|++++|.
T Consensus 144 ~L~l~~N~ 151 (198)
T 1ds9_A 144 DLLLAGNP 151 (198)
T ss_dssp EEEECSCH
T ss_pred EEEecCCc
Confidence 55555544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=3.3e-12 Score=118.93 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=92.9
Q ss_pred hhhcCCCcccEEecCCCCCCccCccccCCCcCceEeccCCCCccccccccccccCcEEecCCCCCCcccCccccCCCccc
Q 046587 185 DLLPKFRRLRMLSLQGYCIGELPMSFEDLRLLRLLNLADTDIRSLPESTCTLLNLEILILRNCSRLIKLPPKMRNLINLR 264 (703)
Q Consensus 185 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 264 (703)
..+..+++|++|++++|.+..+| .++.+++|++|++++|.++.+|..++.+++|++|++++| .+..+| .++.+++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 36788999999999999999998 899999999999999999999998888999999999998 677777 589999999
Q ss_pred EEeecCccccccCCc--cCCCCCCCcccCeeEee
Q 046587 265 HLDIRGAKLLKEMPF--GMKELKNLQTLSNFIVG 296 (703)
Q Consensus 265 ~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~ 296 (703)
+|++++|.. ..++. .++.+++|++|++..+.
T Consensus 119 ~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 119 VLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EEECCCCcC-CchhHHHHHhcCCCCCEEEecCCc
Confidence 999999964 44333 57888999988875543
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=5.6e-09 Score=105.58 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCCCcEEEecCCCCCCccCCCCC--CCCccEEEeccCCCCccccc-ccCCCCCcc-eEeeccCCCcccCCCCCC--CCCc
Q 046587 598 LKCLQSIYIWKCPSLVSFPERGL--PNTISRVGIGECDKLEALPN-DLHKINSLR-YLSIQLCRNLVSFPEEGF--PTSL 671 (703)
Q Consensus 598 l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~-~L~l~~c~~l~~l~~~~~--~~~L 671 (703)
+++|+.+++++| .+..++...+ +++|+++++.++ ++.|+. .|.++++|+ .+++.+ .++.|+...| +++|
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 455666666554 3555554333 445666666552 555543 456777777 777776 5667766544 5677
Q ss_pred CeEEEecCCCCccccccCcCCCCceeeEE
Q 046587 672 TSLRIGDFKMYKTLVQWGLHRLTSLGRLY 700 (703)
Q Consensus 672 ~~L~i~~c~~l~~~~~~~l~~l~~L~~L~ 700 (703)
+.+++++ ..++.++...|.++++|+.++
T Consensus 300 ~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 7777766 356667776677777777776
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=1.7e-09 Score=97.87 Aligned_cols=82 Identities=24% Similarity=0.315 Sum_probs=74.3
Q ss_pred CcccEEecCCCCCCcc-CccccCCCcCceEeccCCCCcccccc-ccccccCcEEecCCCCCCcccCcc-ccCCCcccEEe
Q 046587 191 RRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSLPES-TCTLLNLEILILRNCSRLIKLPPK-MRNLINLRHLD 267 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 267 (703)
+.|++|+|++|.+..+ |..|+.+++|++|+|++|.++.+|.. ++++++|++|+|++| .+..+|.. ++.+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 6899999999999888 66889999999999999999999876 589999999999998 67788865 89999999999
Q ss_pred ecCccc
Q 046587 268 IRGAKL 273 (703)
Q Consensus 268 l~~~~~ 273 (703)
+++|.+
T Consensus 112 L~~N~~ 117 (174)
T 2r9u_A 112 LYNNPW 117 (174)
T ss_dssp CCSSCB
T ss_pred eCCCCc
Confidence 999963
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=9.8e-09 Score=103.78 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=86.0
Q ss_pred cccEEEEecCCCCccccccccccCCccEEEeecCcCcccccc-cCCCCCCCcEEEecCCCCCCccCCCCC--CCCcc-EE
Q 046587 552 MLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILD-GLPNLKCLQSIYIWKCPSLVSFPERGL--PNTIS-RV 627 (703)
Q Consensus 552 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~-~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~-~L 627 (703)
+++.+.+.+.-...........+++|++|++.+|. ++.+|. .|.++++|+++++.++ +..++...+ +++|+ .+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 36666666542211111111236889999999874 566654 5888999999999886 878877655 67799 99
Q ss_pred EeccCCCCcccc-cccCCCCCcceEeeccCCCcccCCCCCC--CCCcCeEE
Q 046587 628 GIGECDKLEALP-NDLHKINSLRYLSIQLCRNLVSFPEEGF--PTSLTSLR 675 (703)
Q Consensus 628 ~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~ 675 (703)
.+.+ .++.|+ ..|.+|++|+.++++++ .++.++...| +++|+.++
T Consensus 280 ~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 280 ELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred EEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 9987 677775 57889999999999888 8899987755 56777765
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=3e-09 Score=95.87 Aligned_cols=82 Identities=27% Similarity=0.359 Sum_probs=73.8
Q ss_pred CcccEEecCCCCCCcc-CccccCCCcCceEeccCCCCcccccc-ccccccCcEEecCCCCCCcccCc-cccCCCcccEEe
Q 046587 191 RRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSLPES-TCTLLNLEILILRNCSRLIKLPP-KMRNLINLRHLD 267 (703)
Q Consensus 191 ~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 267 (703)
+.|++|+|++|.++.+ |..|+.+.+|++|+|++|.++.+|.. +.++++|++|+|++| .+..+|. .+.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 6899999999999888 66799999999999999999999876 589999999999998 6777776 489999999999
Q ss_pred ecCccc
Q 046587 268 IRGAKL 273 (703)
Q Consensus 268 l~~~~~ 273 (703)
+++|..
T Consensus 109 L~~N~~ 114 (170)
T 3g39_A 109 LLNNPW 114 (170)
T ss_dssp CCSSCB
T ss_pred eCCCCC
Confidence 999964
No 144
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.73 E-value=1.2e-08 Score=112.22 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=74.9
Q ss_pred CCchHHHHHhhccCchhhhhHhhhhcCCCCCCccCHHHHHHHHHHCCCCccCCCCchHHHHHHHHHHHHHhCCCccccC-
Q 046587 21 SGVLPVLRLSYHHLPSHLKRCFAYCAIFPKDYEFNEKELTFLWMAGGIIRQSRKNERLEDLGGKCFHDLVSRSIFPQTS- 99 (703)
Q Consensus 21 ~~i~~~L~lSYd~L~~~~K~cFL~~a~fp~~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~- 99 (703)
..|..+++.||+.||++.|.||++||+||+|+.|+.+.++..|.++ .+.+..++++|+++||++...
T Consensus 362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~ 429 (591)
T 1z6t_A 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRN 429 (591)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecC
Confidence 3688999999999999999999999999999999999999999643 234678999999999998654
Q ss_pred CCCCceeeCcHHHHHHHHhh
Q 046587 100 SGSSKFVMHDLIHDLAELVS 119 (703)
Q Consensus 100 ~~~~~~~mHdlv~d~a~~i~ 119 (703)
+....|+|||+||++++..+
T Consensus 430 ~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 430 GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TTEEEEECCHHHHHHHHHHT
T ss_pred CCccEEEEcHHHHHHHHhhh
Confidence 33457999999999998874
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.72 E-value=1.2e-06 Score=90.39 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=24.2
Q ss_pred cCCCCCCCcEEEecCCCCCCccCCCCC--CCCccEEEeccCCCCcccc-cccCCCCCcceEeeccC
Q 046587 594 GLPNLKCLQSIYIWKCPSLVSFPERGL--PNTISRVGIGECDKLEALP-NDLHKINSLRYLSIQLC 656 (703)
Q Consensus 594 ~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c 656 (703)
.+.++++|+.+.+.+ .+..++...+ +++|+.+.+.+ .++.++ ..|.++ +|+.+.+.++
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 344455555554442 2444433322 23444444432 233332 233444 4555555444
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=4.4e-08 Score=99.90 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=47.8
Q ss_pred EecCCC-CCCccCccccCCCcCceEeccC-CCCcccc-ccccccccCcEEecCCCCCCcccC-ccccCCCcccEEeecCc
Q 046587 196 LSLQGY-CIGELPMSFEDLRLLRLLNLAD-TDIRSLP-ESTCTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIRGA 271 (703)
Q Consensus 196 L~L~~~-~l~~lp~~i~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 271 (703)
++++++ .+..+|. +..+.+|++|+|++ |.++.+| ..|++|.+|++|+|++| .+..+| ..|++|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 355554 5555555 55555556666654 5555554 34555556666666555 333333 33555556666666555
Q ss_pred cccccCCccCCCCCCCcccCee
Q 046587 272 KLLKEMPFGMKELKNLQTLSNF 293 (703)
Q Consensus 272 ~~~~~~p~~i~~l~~L~~L~~~ 293 (703)
. +..+|..+.....|+.|++.
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECC
T ss_pred c-cceeCHHHcccCCceEEEee
Confidence 4 33444332222225554443
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.64 E-value=4.3e-06 Score=86.61 Aligned_cols=123 Identities=11% Similarity=0.142 Sum_probs=60.8
Q ss_pred ccccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCcc-CccccCCCcCceEeccCCCCcccc-ccc
Q 046587 156 KVFNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTDIRSLP-EST 233 (703)
Q Consensus 156 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~i 233 (703)
.+|..+.+|+.+.+... ...+...+|.++.+|+.+++..+ +..+ ..+|.++..|+.+.+..+ ++.+. ..+
T Consensus 65 ~AF~~c~~L~~i~lp~~------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp TTTTTCTTEEEEECCTT------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred HHhhCCCCceEEEeCCC------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 34566666766655321 12334455666677777766543 4444 235566666666555443 22222 233
Q ss_pred cccccCcEEecCCCCCCcccC-ccccCCCcccEEeecCccccccCCcc-CCCCCCCcccC
Q 046587 234 CTLLNLEILILRNCSRLIKLP-PKMRNLINLRHLDIRGAKLLKEMPFG-MKELKNLQTLS 291 (703)
Q Consensus 234 ~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~ 291 (703)
.....++...... ...+. ..|.++++|+.+.+.++ ...++.. +..+++|+.+.
T Consensus 137 ~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~ 191 (394)
T 4fs7_A 137 KGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIK 191 (394)
T ss_dssp TTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCcc---ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEE
Confidence 3333333322222 12222 34666777777777554 2333333 55556666554
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=1.1e-06 Score=90.58 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=64.7
Q ss_pred hhhhhhcCCCcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCcccc-ccccccccCcEEecCCCCCCcccCccccC
Q 046587 182 VLSDLLPKFRRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSLP-ESTCTLLNLEILILRNCSRLIKLPPKMRN 259 (703)
Q Consensus 182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 259 (703)
+...+|.++ .|+.+.+..+ +..++ .+|.++ +|+.+.+.. .++.++ ..|.++.+|+.+++.+| .+..+|.....
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~ 201 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV 201 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEe
Confidence 344556654 5777777654 65553 355553 577777775 555554 45677777777777775 56666655434
Q ss_pred CCcccEEeecCccccccCCcc-CCCCCCCcccCe
Q 046587 260 LINLRHLDIRGAKLLKEMPFG-MKELKNLQTLSN 292 (703)
Q Consensus 260 L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~ 292 (703)
..+|+.+.+..+ +..++.. +..+++|+.+.+
T Consensus 202 ~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 202 YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCCEEC
T ss_pred ecccCEEEeCCc--hheehhhHhhCCCCCCEEec
Confidence 577777777654 4444433 666777776653
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.57 E-value=1.1e-07 Score=97.03 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=74.0
Q ss_pred hcCCCcccEEecCC-CCCCccC-ccccCCCcCceEeccCCCCccccc-cccccccCcEEecCCCCCCcccCccccCCCcc
Q 046587 187 LPKFRRLRMLSLQG-YCIGELP-MSFEDLRLLRLLNLADTDIRSLPE-STCTLLNLEILILRNCSRLIKLPPKMRNLINL 263 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~-~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 263 (703)
+..+.+|++|+|++ |.++.+| ..|+.+.+|++|+|++|.++.+|+ .|++|.+|++|+|++| .+..+|..+.....|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCc
Confidence 78889999999996 9999987 579999999999999999997765 6799999999999998 677888765444449
Q ss_pred cEEeecCccc
Q 046587 264 RHLDIRGAKL 273 (703)
Q Consensus 264 ~~L~l~~~~~ 273 (703)
+.|++.+|.+
T Consensus 106 ~~l~l~~N~~ 115 (347)
T 2ifg_A 106 QELVLSGNPL 115 (347)
T ss_dssp CEEECCSSCC
T ss_pred eEEEeeCCCc
Confidence 9999999863
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.54 E-value=4.6e-06 Score=86.35 Aligned_cols=77 Identities=13% Similarity=0.130 Sum_probs=34.9
Q ss_pred ccCCccEEEeecCcCccccc-ccCCCCCCCcEEEecCCCCCCccCCCCC--CCCccEEEeccCCCCccccc-ccCCCCCc
Q 046587 573 FLEALEFLEIRDCPELESIL-DGLPNLKCLQSIYIWKCPSLVSFPERGL--PNTISRVGIGECDKLEALPN-DLHKINSL 648 (703)
Q Consensus 573 ~~~~L~~L~l~~c~~l~~~p-~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~l~~lp~-~~~~l~~L 648 (703)
.+.+|+.+.+.++ ++.++ ..+.++++|+.+++.+ .++.+....+ +.+|+.+.+.. .++.++. .|.+|++|
T Consensus 295 ~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 295 GCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINL 368 (394)
T ss_dssp TCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTC
T ss_pred ccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCC
Confidence 3444555555432 33332 2344455555555532 2444443333 34455555543 1444432 45556666
Q ss_pred ceEeecc
Q 046587 649 RYLSIQL 655 (703)
Q Consensus 649 ~~L~l~~ 655 (703)
+.+++..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 6666543
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=5.3e-07 Score=79.73 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=47.4
Q ss_pred CccEEEeecCcCcccccccCCCCCCCcEEEecCCCCCCccC-----CC-CCCCCccEEEeccCCCCccc-ccccCCCCCc
Q 046587 576 ALEFLEIRDCPELESILDGLPNLKCLQSIYIWKCPSLVSFP-----ER-GLPNTISRVGIGECDKLEAL-PNDLHKINSL 648 (703)
Q Consensus 576 ~L~~L~l~~c~~l~~~p~~~~~l~~L~~L~l~~c~~l~~~~-----~~-~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L 648 (703)
.|++|++++|.....--..+.++++|++|++++|..++.-. .. ...++|++|+|++|+.++.- -..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 47777777775222222335567777777777776554321 10 01235666666666666531 1223456677
Q ss_pred ceEeeccCCCccc
Q 046587 649 RYLSIQLCRNLVS 661 (703)
Q Consensus 649 ~~L~l~~c~~l~~ 661 (703)
++|++++|+.+++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 7777777766654
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.01 E-value=6.1e-07 Score=91.66 Aligned_cols=129 Identities=20% Similarity=0.205 Sum_probs=62.6
Q ss_pred CceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-ccc-----cCCCcCceEeccCCCCcc-----cc
Q 046587 162 EHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MSF-----EDLRLLRLLNLADTDIRS-----LP 230 (703)
Q Consensus 162 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i-----~~l~~L~~L~L~~~~i~~-----lp 230 (703)
++|+.|.+.++. +...........+++|+.|+|++|.++... ..+ ....+|++|+|++|.++. ++
T Consensus 101 ~~L~~L~Ls~n~----l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 101 HALDEVNLASCQ----LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp SCEEEEECTTCC----CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CCceEEEecCCC----CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 456666655543 222222222333445666666666654321 111 234556666666666542 33
Q ss_pred ccccccccCcEEecCCCCCCcc-----cCccccCCCcccEEeecCccccc----cCCccCCCCCCCcccCeeEe
Q 046587 231 ESTCTLLNLEILILRNCSRLIK-----LPPKMRNLINLRHLDIRGAKLLK----EMPFGMKELKNLQTLSNFIV 295 (703)
Q Consensus 231 ~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~~~~~ 295 (703)
..+..+++|++|+|++|. +.. ++..+...++|++|++++|.+.. .++..+...++|++|++..+
T Consensus 177 ~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 444556666666666653 321 23334555566666666664322 12222334455555554433
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.96 E-value=1.6e-06 Score=88.55 Aligned_cols=137 Identities=15% Similarity=0.060 Sum_probs=92.5
Q ss_pred CceEEEEEEcCccCcccccccccCCCceeEeeeccCCCCcccchhhhhhhh-cCCCcccEEecCCCCCCc-----cCccc
Q 046587 137 ERIRHASYTRGRYDGKNKFKVFNEIEHLRTFLPLHERRGYYIPRTVLSDLL-PKFRRLRMLSLQGYCIGE-----LPMSF 210 (703)
Q Consensus 137 ~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~l~~-----lp~~i 210 (703)
..++.+.+..+.............+++|+.|.+.++.-... ....+...+ ...+.|++|+|++|.++. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 45666766665432211111123456899999887751111 112222233 356889999999999854 45566
Q ss_pred cCCCcCceEeccCCCCcc-----ccccccccccCcEEecCCCCCCcc-----cCccccCCCcccEEeecCccccc
Q 046587 211 EDLRLLRLLNLADTDIRS-----LPESTCTLLNLEILILRNCSRLIK-----LPPKMRNLINLRHLDIRGAKLLK 275 (703)
Q Consensus 211 ~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~ 275 (703)
..+++|++|+|++|.|+. ++..+...++|++|+|++|. +.. ++..+...++|++|++++|.+..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 788999999999999873 45667788999999999984 442 34445678999999999997543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.92 E-value=4.1e-06 Score=84.72 Aligned_cols=129 Identities=13% Similarity=0.165 Sum_probs=79.7
Q ss_pred CCcccccEEEEecCCCCccccccccccCCccEEEeecCcCcccccccC--CCCCCCcEEEecCCCC-------CCc---c
Q 046587 548 SSPVMLQHLSIENCPELTSLSSGVQFLEALEFLEIRDCPELESILDGL--PNLKCLQSIYIWKCPS-------LVS---F 615 (703)
Q Consensus 548 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~p~~~--~~l~~L~~L~l~~c~~-------l~~---~ 615 (703)
..+++|+.|.+++|..+. ++. + ..++|+.|+|..|..-......+ ..+|+|+.|+|+.+.. +.. .
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 445669999999884432 333 3 36789999998875433222222 3688999999864211 111 1
Q ss_pred CCCCCCCCccEEEeccCCCCccccccc---CCCCCcceEeeccCCCccc-----CCCC-CCCCCcCeEEEecCC
Q 046587 616 PERGLPNTISRVGIGECDKLEALPNDL---HKINSLRYLSIQLCRNLVS-----FPEE-GFPTSLTSLRIGDFK 680 (703)
Q Consensus 616 ~~~~~~~~L~~L~l~~c~~l~~lp~~~---~~l~~L~~L~l~~c~~l~~-----l~~~-~~~~~L~~L~i~~c~ 680 (703)
.....+++|+.|.+.+|......+..+ ..+++|++|+|+.| .++. ++.. ..+++|+.|++++|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 112336789999998876543222211 35788999999877 5655 3322 235788999998875
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=2.6e-06 Score=75.27 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=65.7
Q ss_pred cccccCCCCCCCcEEEecCCCCCCc--cCCCCCCCCccEEEeccCCCCcccc-cccCC----CCCcceEeeccCCCcccC
Q 046587 590 SILDGLPNLKCLQSIYIWKCPSLVS--FPERGLPNTISRVGIGECDKLEALP-NDLHK----INSLRYLSIQLCRNLVSF 662 (703)
Q Consensus 590 ~~p~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~----l~~L~~L~l~~c~~l~~l 662 (703)
.+|.....-..|+.|++++|. +.. +.....+++|++|++++|..++.-- ..+.. +++|++|+|++|+++++-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 345544344579999999997 432 2222357899999999999887421 12233 357999999999888762
Q ss_pred CCC--CCCCCcCeEEEecCCCCcc
Q 046587 663 PEE--GFPTSLTSLRIGDFKMYKT 684 (703)
Q Consensus 663 ~~~--~~~~~L~~L~i~~c~~l~~ 684 (703)
--. .-+++|+.|++++|+.++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHhcCCCCCEEECCCCCCCCc
Confidence 111 2368999999999998884
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=7.1e-06 Score=74.62 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=26.3
Q ss_pred hcCCCcccEEecCCCCCCc-----cCccccCCCcCceEeccCCCCcc-----ccccccccccCcEEec
Q 046587 187 LPKFRRLRMLSLQGYCIGE-----LPMSFEDLRLLRLLNLADTDIRS-----LPESTCTLLNLEILIL 244 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L 244 (703)
+...+.|++|+|++|.++. +...+.....|++|+|++|.|.. +...+...++|++|+|
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 3444455555555555432 22223333445555555555442 2333444445555555
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=7e-06 Score=83.04 Aligned_cols=182 Identities=17% Similarity=0.122 Sum_probs=103.7
Q ss_pred CCCCccEEEEecCCCccccceeeEEEcCC--CccccccccCCCCCccEEEEecCcccccccccccccCCCCCCCCCCCCc
Q 046587 473 LLPSLETLVVSKCKKLFIRAEWMLYIRDR--DCLTFIARRRLPASLKRLEIENCEKLQRLFDDEEDASSSSPSPASSSSP 550 (703)
Q Consensus 473 ~l~~L~~L~l~~~~~l~~~~~~~~~i~~~--~~l~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~ 550 (703)
.+++|+.|.+.+... .. ..+..+ ..+..+. .-+++|++|.++++..++ + . .+ ..
T Consensus 137 ~l~~L~~L~l~~~~~-e~-----~~is~~~~~~L~~ll--~~~P~L~~L~L~g~~~l~---l--------~----~~-~~ 192 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDF-EE-----QEISWIEQVDLSPVL--DAMPLLNNLKIKGTNNLS---I--------G----KK-PR 192 (362)
T ss_dssp HHTTCSEEEECCCCT-TT-----CCGGGCBCCBCHHHH--HTCTTCCEEEEECCBTCB---C--------C----SC-BC
T ss_pred hcchhhheeecCcch-hh-----cccccccccCHHHHH--hcCCCCcEEEEeCCCCce---e--------c----cc-cC
Confidence 489999999976531 00 001001 0111111 223588888887763222 0 0 11 25
Q ss_pred ccccEEEEecCCCCccccccc--cccCCccEEEeecCcC-------cccccccC--CCCCCCcEEEecCCCCCCc----c
Q 046587 551 VMLQHLSIENCPELTSLSSGV--QFLEALEFLEIRDCPE-------LESILDGL--PNLKCLQSIYIWKCPSLVS----F 615 (703)
Q Consensus 551 ~~L~~L~l~~~~~l~~l~~~~--~~~~~L~~L~l~~c~~-------l~~~p~~~--~~l~~L~~L~l~~c~~l~~----~ 615 (703)
++|++|++..|.........+ ..+++|+.|+|+.+.+ +..+...+ ..+++|+.|++++|..... +
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 569999999886433222222 2578999999974311 22222223 3589999999999864321 1
Q ss_pred CCCCCCCCccEEEeccCCCCcc-----cccccCCCCCcceEeeccCCCcccCCCCCCCCCc-CeEEEecCC
Q 046587 616 PERGLPNTISRVGIGECDKLEA-----LPNDLHKINSLRYLSIQLCRNLVSFPEEGFPTSL-TSLRIGDFK 680 (703)
Q Consensus 616 ~~~~~~~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L-~~L~i~~c~ 680 (703)
.....+++|+.|+++.| .++. ++.++..+++|+.|++++| .+..--...+...+ ..++++++.
T Consensus 273 a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 273 LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHCCSEEECCSBC
T ss_pred HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHcCCEEEecCCc
Confidence 12235788999999875 4553 4555567899999999999 44331100011112 457776654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=3e-06 Score=81.02 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=40.4
Q ss_pred CCCcCceEeccCCCCcccc---ccccccccCcEEecCCCCCCcccCccccCCC--cccEEeecCccccccCCc-------
Q 046587 212 DLRLLRLLNLADTDIRSLP---ESTCTLLNLEILILRNCSRLIKLPPKMRNLI--NLRHLDIRGAKLLKEMPF------- 279 (703)
Q Consensus 212 ~l~~L~~L~L~~~~i~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~~p~------- 279 (703)
++++|++|+|++|.|+.++ ..++.+++|++|+|++| .+..+. .+..++ +|++|++++|.....+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4555666666666555432 34455666666666665 344332 233333 666666666654444431
Q ss_pred cCCCCCCCcccC
Q 046587 280 GMKELKNLQTLS 291 (703)
Q Consensus 280 ~i~~l~~L~~L~ 291 (703)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 134455555554
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.78 E-value=0.00061 Score=70.26 Aligned_cols=106 Identities=11% Similarity=0.146 Sum_probs=65.7
Q ss_pred cccCCC-ceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCC---CCcc-CccccCCCcCceEeccCCCCcccc-
Q 046587 157 VFNEIE-HLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYC---IGEL-PMSFEDLRLLRLLNLADTDIRSLP- 230 (703)
Q Consensus 157 ~~~~~~-~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---l~~l-p~~i~~l~~L~~L~L~~~~i~~lp- 230 (703)
+|..++ .|++..+... ...+...+|.++.+|+.+.+..+. ++.+ ..+|..+.+|+.+.+..+ ++.++
T Consensus 58 aF~~~~~~L~sI~iP~s------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp TTTTCCSCCCEEEECTT------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred hccCCCCcCEEEEECCC------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 455553 4666655332 133455667788888888877653 5555 346677777777776554 44444
Q ss_pred ccccccccCcEEecCCCCCCcccCc-cccCCCcccEEeecCc
Q 046587 231 ESTCTLLNLEILILRNCSRLIKLPP-KMRNLINLRHLDIRGA 271 (703)
Q Consensus 231 ~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 271 (703)
..+..+.+|+.+.+... +..++. .+..+..|+.+.+..+
T Consensus 131 ~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 34567778888888652 444443 4667777887777654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=1.7e-05 Score=75.88 Aligned_cols=81 Identities=21% Similarity=0.160 Sum_probs=65.2
Q ss_pred hcCCCcccEEecCCCCCCcc---CccccCCCcCceEeccCCCCccccccccccc--cCcEEecCCCCCCcccCc------
Q 046587 187 LPKFRRLRMLSLQGYCIGEL---PMSFEDLRLLRLLNLADTDIRSLPESTCTLL--NLEILILRNCSRLIKLPP------ 255 (703)
Q Consensus 187 ~~~l~~Lr~L~L~~~~l~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~------ 255 (703)
...++.|+.|+|++|.+..+ |..++.+++|++|+|++|.|+.+ ..+..+. +|++|+|.+|..-...|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 35688999999999998765 45667899999999999999977 4455555 999999999965555552
Q ss_pred -cccCCCcccEEee
Q 046587 256 -KMRNLINLRHLDI 268 (703)
Q Consensus 256 -~i~~L~~L~~L~l 268 (703)
.+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2678999999974
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.77 E-value=0.0033 Score=64.70 Aligned_cols=86 Identities=9% Similarity=0.201 Sum_probs=54.3
Q ss_pred hhhhhcCCC-cccEEecCCCCCCcc-CccccCCCcCceEeccCCC---Ccccc-ccccccccCcEEecCCCCCCcccCc-
Q 046587 183 LSDLLPKFR-RLRMLSLQGYCIGEL-PMSFEDLRLLRLLNLADTD---IRSLP-ESTCTLLNLEILILRNCSRLIKLPP- 255 (703)
Q Consensus 183 ~~~~~~~l~-~Lr~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~---i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~- 255 (703)
...+|.+++ .|+.+.+..+ ++.+ ..+|.++.+|+.+.+..+. ++.++ ..|..+.+|+.+.+..+ +..++.
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~ 131 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSE 131 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhh
Confidence 345566664 4888887643 6666 4567888888888887653 55554 34566677777766652 444543
Q ss_pred cccCCCcccEEeecCc
Q 046587 256 KMRNLINLRHLDIRGA 271 (703)
Q Consensus 256 ~i~~L~~L~~L~l~~~ 271 (703)
.+..+.+|+.+.+...
T Consensus 132 aF~~c~~L~~i~lp~~ 147 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG 147 (394)
T ss_dssp TTTTCTTCCEEECCTT
T ss_pred hhhhhcccccccccce
Confidence 3566777777776543
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.71 E-value=6.2e-06 Score=75.03 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=83.8
Q ss_pred hhhhhhhcCCCcccEEecCCC-CCCc-----cCccccCCCcCceEeccCCCCcc-----ccccccccccCcEEecCCCCC
Q 046587 181 TVLSDLLPKFRRLRMLSLQGY-CIGE-----LPMSFEDLRLLRLLNLADTDIRS-----LPESTCTLLNLEILILRNCSR 249 (703)
Q Consensus 181 ~~~~~~~~~l~~Lr~L~L~~~-~l~~-----lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~ 249 (703)
..+...+...+.|+.|+|++| .++. +...+....+|++|+|++|.|.. +...+...++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~- 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF- 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-
Confidence 345566788899999999999 7753 44566777899999999999873 44556677899999999984
Q ss_pred Ccc-----cCccccCCCcccEEee--cCcccccc----CCccCCCCCCCcccCeeEe
Q 046587 250 LIK-----LPPKMRNLINLRHLDI--RGAKLLKE----MPFGMKELKNLQTLSNFIV 295 (703)
Q Consensus 250 l~~-----lp~~i~~L~~L~~L~l--~~~~~~~~----~p~~i~~l~~L~~L~~~~~ 295 (703)
+.. +...+...+.|++|++ ++|.+... +...+...++|++|++..+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 443 4556778889999999 77864432 2333455677888876544
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.43 E-value=0.02 Score=58.48 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=91.1
Q ss_pred CCCCcccccEEEEecCCCCcccc-ccccccCCccEEEeecCcCccccc-ccCCCCCCCcEEEecCCCCCCccCCCCC--C
Q 046587 546 SSSSPVMLQHLSIENCPELTSLS-SGVQFLEALEFLEIRDCPELESIL-DGLPNLKCLQSIYIWKCPSLVSFPERGL--P 621 (703)
Q Consensus 546 ~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~p-~~~~~l~~L~~L~l~~c~~l~~~~~~~~--~ 621 (703)
.+....+|+.+.+... +..+. ..+..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+.. .+..++...+ +
T Consensus 212 ~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c 285 (379)
T 4h09_A 212 GFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGC 285 (379)
T ss_dssp TTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTC
T ss_pred ccccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceeccccccccc
Confidence 3444555777766442 34343 33445677888888654 55553 4567788899988864 4666665443 5
Q ss_pred CCccEEEeccCCCCcccc-cccCCCCCcceEeeccCCCcccCCCCCC--CCCcCeEEEecCCCCccccccCcCCCCc
Q 046587 622 NTISRVGIGECDKLEALP-NDLHKINSLRYLSIQLCRNLVSFPEEGF--PTSLTSLRIGDFKMYKTLVQWGLHRLTS 695 (703)
Q Consensus 622 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~l~~l~~ 695 (703)
++|+.+.+.+ ..++.++ ..+.+|++|+.+.|.+ .++.|....+ +++|+.+.+.. .++.+.+..|.+...
T Consensus 286 ~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 286 SNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESGAFEGSSI 357 (379)
T ss_dssp TTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTSSC
T ss_pred cccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchhHhhCCCC
Confidence 7899988876 4466664 3578889999998864 4777766544 57888888754 366777666666543
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.13 E-value=0.017 Score=58.92 Aligned_cols=80 Identities=5% Similarity=0.081 Sum_probs=41.5
Q ss_pred ccCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCccC-ccccCCCcCceEeccCCCCcccccccccc
Q 046587 158 FNEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGELP-MSFEDLRLLRLLNLADTDIRSLPESTCTL 236 (703)
Q Consensus 158 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L 236 (703)
+....+++.+.+... ...+...+|.++.+|+.+.+..+ ++.++ .+|.++ .|+.+.+..+ ++.++......
T Consensus 42 ~~~~~~i~~v~ip~~------vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~ 112 (379)
T 4h09_A 42 YKDRDRISEVRVNSG------ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG 112 (379)
T ss_dssp GGGGGGCSEEEECTT------EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT
T ss_pred cccccCCEEEEeCCC------ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc
Confidence 344555666554321 13344556777777777777533 55553 345554 4555555432 44444333233
Q ss_pred ccCcEEecCC
Q 046587 237 LNLEILILRN 246 (703)
Q Consensus 237 ~~L~~L~L~~ 246 (703)
.+|+.+.+..
T Consensus 113 ~~L~~i~lp~ 122 (379)
T 4h09_A 113 TDLDDFEFPG 122 (379)
T ss_dssp CCCSEEECCT
T ss_pred CCcccccCCC
Confidence 4666666665
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.01 E-value=0.01 Score=49.71 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=32.6
Q ss_pred EEecCCCCCC--ccCccccCCCcCceEeccCCCCcccccc-ccccccCcEEecCCC
Q 046587 195 MLSLQGYCIG--ELPMSFEDLRLLRLLNLADTDIRSLPES-TCTLLNLEILILRNC 247 (703)
Q Consensus 195 ~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~ 247 (703)
+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. +..+.+|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5667777776 6775543 3567777777777766643 455666666666665
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.12 E-value=0.031 Score=46.70 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=44.5
Q ss_pred ceEeccCCCCc--cccccccccccCcEEecCCCCCCcccCcc-ccCCCcccEEeecCccc
Q 046587 217 RLLNLADTDIR--SLPESTCTLLNLEILILRNCSRLIKLPPK-MRNLINLRHLDIRGAKL 273 (703)
Q Consensus 217 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 273 (703)
.+++-++..++ .+|..+. .+|++|+|++| .+..+|.+ |..+++|++|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 47888888888 8987654 57999999998 78888765 68899999999999853
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.55 E-value=0.1 Score=46.86 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=14.7
Q ss_pred CcCceEeccCCCCc-----cccccccccccCcEEecCCC
Q 046587 214 RLLRLLNLADTDIR-----SLPESTCTLLNLEILILRNC 247 (703)
Q Consensus 214 ~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~ 247 (703)
..|+.|+|++|.|. .+-..+..-+.|++|+|++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 44455555554443 12222333344555555544
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.46 E-value=0.13 Score=46.11 Aligned_cols=113 Identities=18% Similarity=0.082 Sum_probs=65.8
Q ss_pred cCCCceeEeeeccCCCCcccchhhhhhhhcCCCcccEEecCCCCCCc-----cCccccCCCcCceEeccCCCCc-----c
Q 046587 159 NEIEHLRTFLPLHERRGYYIPRTVLSDLLPKFRRLRMLSLQGYCIGE-----LPMSFEDLRLLRLLNLADTDIR-----S 228 (703)
Q Consensus 159 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~~~i~-----~ 228 (703)
..-+.|+.|.+.++.....-....+...+..-..|+.|+|++|.++. +...+..=+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45667888877653211111122344556667788888888888753 2333444467888888888886 2
Q ss_pred ccccccccccCcEEecCCCCC--Cc-----ccCccccCCCcccEEeecCc
Q 046587 229 LPESTCTLLNLEILILRNCSR--LI-----KLPPKMRNLINLRHLDIRGA 271 (703)
Q Consensus 229 lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~ 271 (703)
+-+.+..-+.|+.|+|++|.. +. .+...+..=+.|+.|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 334455556688888876421 11 12222334456666766554
No 169
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=23.16 E-value=20 Score=21.85 Aligned_cols=9 Identities=44% Similarity=1.106 Sum_probs=7.0
Q ss_pred cCCCCCCcc
Q 046587 46 AIFPKDYEF 54 (703)
Q Consensus 46 a~fp~~~~i 54 (703)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 578888876
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.20 E-value=1.5e+02 Score=22.60 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=31.0
Q ss_pred Ccccc-cccCCCCCcceEeeccCCCcccCCCCCC--CCCcCeEEEecC
Q 046587 635 LEALP-NDLHKINSLRYLSIQLCRNLVSFPEEGF--PTSLTSLRIGDF 679 (703)
Q Consensus 635 l~~lp-~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c 679 (703)
++.|. ..|.+|++|+.+.|-. .++.|-...| +.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 34443 3578899999999975 4677766544 689999999763
Done!