Query 046591
Match_columns 711
No_of_seqs 295 out of 1927
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 13:43:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 3E-136 6E-141 1199.8 72.5 688 1-695 74-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-113 7E-118 989.2 46.6 690 1-697 54-768 (769)
3 PRK03562 glutathione-regulated 100.0 2.1E-43 4.6E-48 405.2 35.7 378 1-408 36-419 (621)
4 PRK10669 putative cation:proto 100.0 1.9E-43 4.1E-48 404.3 35.1 346 1-368 37-390 (558)
5 PRK03659 glutathione-regulated 100.0 1.1E-42 2.3E-47 398.9 36.0 341 1-368 36-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 6.5E-41 1.4E-45 364.9 35.6 347 1-369 37-387 (397)
7 PRK05326 potassium/proton anti 100.0 5.1E-35 1.1E-39 334.6 28.0 350 1-368 37-389 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 4.9E-36 1.1E-40 328.8 -3.6 348 1-366 27-378 (380)
9 TIGR00932 2a37 transporter, mo 100.0 4.3E-32 9.4E-37 283.6 25.2 249 1-271 23-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 1.8E-29 3.9E-34 248.9 22.3 342 2-367 38-388 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 3.8E-23 8.3E-28 234.3 30.2 326 2-338 46-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 2.1E-22 4.6E-27 227.7 28.3 340 2-365 30-407 (525)
13 PRK11175 universal stress prot 99.9 1.3E-22 2.8E-27 215.8 20.0 271 389-694 4-301 (305)
14 COG0025 NhaP NhaP-type Na+/H+ 99.8 1.3E-18 2.7E-23 191.7 30.5 345 3-367 39-407 (429)
15 TIGR00840 b_cpa1 sodium/hydrog 99.8 4.8E-19 1E-23 200.2 24.6 328 32-366 66-416 (559)
16 COG3263 NhaP-type Na+/H+ and K 99.8 8.8E-18 1.9E-22 174.4 22.0 334 3-357 40-376 (574)
17 PRK14853 nhaA pH-dependent sod 99.8 8E-16 1.7E-20 165.0 31.5 301 30-367 61-396 (423)
18 KOG4505 Na+/H+ antiporter [Ino 99.6 1.8E-13 4E-18 137.8 22.0 320 2-334 46-382 (467)
19 cd01988 Na_H_Antiporter_C The 99.5 4E-14 8.7E-19 130.6 11.5 128 390-531 1-131 (132)
20 TIGR00773 NhaA Na+/H+ antiport 99.5 1.4E-12 3.1E-17 137.5 22.4 268 30-335 51-344 (373)
21 PRK15005 universal stress prot 99.5 3E-13 6.4E-18 127.1 10.7 136 389-531 3-143 (144)
22 PRK15456 universal stress prot 99.4 4.6E-13 1E-17 125.7 9.8 134 389-531 3-141 (142)
23 PRK09982 universal stress prot 99.4 1.3E-12 2.9E-17 122.6 10.8 133 389-531 4-137 (142)
24 PRK15118 universal stress glob 99.4 1.8E-12 4E-17 121.9 10.9 135 389-532 4-138 (144)
25 cd01989 STK_N The N-terminal d 99.3 4.5E-12 9.7E-17 119.4 10.0 138 390-533 1-145 (146)
26 KOG1965 Sodium/hydrogen exchan 99.3 1.1E-10 2.5E-15 127.7 16.9 322 39-366 106-454 (575)
27 cd01987 USP_OKCHK USP domain i 99.2 1.2E-10 2.6E-15 106.4 10.9 119 390-531 1-123 (124)
28 PRK10116 universal stress prot 99.2 1.3E-10 2.8E-15 108.8 10.8 135 389-533 4-139 (142)
29 PF00582 Usp: Universal stress 99.1 5.8E-11 1.3E-15 109.5 6.3 131 389-531 3-139 (140)
30 cd01989 STK_N The N-terminal d 99.1 5.1E-10 1.1E-14 105.3 12.8 127 551-693 1-145 (146)
31 PRK14856 nhaA pH-dependent sod 99.1 1.2E-08 2.5E-13 109.8 22.9 266 30-335 67-398 (438)
32 PRK15005 universal stress prot 99.1 1.5E-09 3.2E-14 101.9 12.9 126 549-692 2-144 (144)
33 PRK09560 nhaA pH-dependent sod 99.1 2.8E-08 6E-13 105.4 22.9 268 30-335 58-353 (389)
34 PRK09982 universal stress prot 99.0 9.2E-10 2E-14 103.3 10.1 123 549-693 3-139 (142)
35 PRK11175 universal stress prot 99.0 5.7E-10 1.2E-14 118.7 8.9 140 388-536 152-303 (305)
36 PRK09561 nhaA pH-dependent sod 99.0 4.9E-08 1.1E-12 103.3 22.2 265 30-335 58-351 (388)
37 PRK14855 nhaA pH-dependent sod 99.0 6.7E-08 1.5E-12 103.6 23.4 264 30-335 62-383 (423)
38 PF00582 Usp: Universal stress 99.0 2.5E-09 5.3E-14 98.5 11.2 127 549-692 2-140 (140)
39 cd01988 Na_H_Antiporter_C The 99.0 2.8E-09 6.1E-14 98.1 11.2 127 551-692 1-132 (132)
40 PRK15456 universal stress prot 99.0 4.5E-09 9.8E-14 98.5 12.1 125 549-692 2-142 (142)
41 PRK14854 nhaA pH-dependent sod 99.0 1.4E-07 2.9E-12 99.6 24.1 266 30-335 55-348 (383)
42 cd01987 USP_OKCHK USP domain i 99.0 2.7E-09 5.7E-14 97.5 9.1 121 551-691 1-123 (124)
43 PRK15118 universal stress glob 98.9 6.5E-09 1.4E-13 97.6 11.1 123 549-693 3-139 (144)
44 cd00293 USP_Like Usp: Universa 98.9 7.5E-09 1.6E-13 94.2 10.3 126 390-531 1-130 (130)
45 PF06965 Na_H_antiport_1: Na+/ 98.9 3.6E-08 7.9E-13 104.3 14.4 268 31-336 55-352 (378)
46 PRK10116 universal stress prot 98.8 1.6E-08 3.6E-13 94.6 10.3 123 549-692 3-138 (142)
47 COG0589 UspA Universal stress 98.6 3.5E-07 7.7E-12 86.0 11.8 139 388-532 5-151 (154)
48 cd00293 USP_Like Usp: Universa 98.6 5.6E-07 1.2E-11 81.7 12.3 126 551-691 1-130 (130)
49 COG3004 NhaA Na+/H+ antiporter 98.6 1.2E-05 2.6E-10 82.0 22.4 265 31-336 62-355 (390)
50 KOG1966 Sodium/hydrogen exchan 98.2 9.1E-07 2E-11 97.0 3.0 316 42-365 109-447 (670)
51 COG0589 UspA Universal stress 98.1 4.5E-05 9.7E-10 71.6 12.5 131 549-694 5-153 (154)
52 PRK12652 putative monovalent c 98.0 1.8E-05 3.8E-10 85.0 9.2 107 389-507 6-123 (357)
53 PRK12652 putative monovalent c 97.9 7.5E-05 1.6E-09 80.2 12.3 122 549-682 5-144 (357)
54 PRK12460 2-keto-3-deoxyglucona 97.9 0.0015 3.3E-08 67.8 20.3 255 39-370 51-308 (312)
55 PF03812 KdgT: 2-keto-3-deoxyg 97.3 0.027 5.9E-07 58.4 19.5 82 39-121 51-134 (314)
56 COG0385 Predicted Na+-dependen 97.0 0.5 1.1E-05 49.8 25.9 153 30-193 35-191 (319)
57 PF05684 DUF819: Protein of un 96.8 0.97 2.1E-05 49.4 27.4 281 27-337 49-348 (378)
58 PRK10490 sensor protein KdpD; 96.8 0.0062 1.3E-07 74.3 11.2 125 386-533 248-374 (895)
59 TIGR00793 kdgT 2-keto-3-deoxyg 96.7 0.044 9.5E-07 56.5 14.7 48 39-86 51-98 (314)
60 TIGR00932 2a37 transporter, mo 96.3 0.088 1.9E-06 54.9 14.6 130 210-345 3-135 (273)
61 PRK03562 glutathione-regulated 96.3 0.077 1.7E-06 62.1 15.5 116 204-323 10-127 (621)
62 PF03601 Cons_hypoth698: Conse 96.3 0.13 2.8E-06 54.4 15.7 173 206-381 5-185 (305)
63 PRK10490 sensor protein KdpD; 96.0 0.037 8E-07 67.6 11.3 124 549-693 250-374 (895)
64 COG0475 KefB Kef-type K+ trans 95.9 0.19 4E-06 55.5 15.1 142 203-352 10-158 (397)
65 PRK10669 putative cation:proto 95.8 0.2 4.4E-06 58.0 15.9 133 205-343 12-146 (558)
66 PRK03659 glutathione-regulated 95.8 0.19 4.1E-06 58.6 15.7 114 204-321 10-125 (601)
67 COG0798 ACR3 Arsenite efflux p 95.6 3.8 8.1E-05 43.3 23.4 234 31-322 49-288 (342)
68 COG2855 Predicted membrane pro 95.5 0.15 3.3E-06 53.6 11.9 115 218-335 32-147 (334)
69 cd01984 AANH_like Adenine nucl 95.4 0.032 7E-07 47.0 5.6 46 484-529 35-84 (86)
70 PF13593 DUF4137: SBF-like CPA 95.4 1.5 3.2E-05 46.8 19.4 151 32-192 30-187 (313)
71 PF01758 SBF: Sodium Bile acid 95.2 1.3 2.8E-05 43.4 17.1 108 37-154 2-112 (187)
72 TIGR00783 ccs citrate carrier 95.2 1.6 3.5E-05 46.6 18.6 117 222-339 203-326 (347)
73 PRK05326 potassium/proton anti 95.2 0.24 5.3E-06 57.3 13.8 118 206-326 13-134 (562)
74 PF05145 AmoA: Putative ammoni 95.2 5.5 0.00012 42.5 22.8 155 204-367 157-315 (318)
75 PRK05274 2-keto-3-deoxyglucona 94.9 0.62 1.3E-05 49.7 14.4 135 228-370 178-316 (326)
76 PF03390 2HCT: 2-hydroxycarbox 94.8 2.3 5.1E-05 46.4 18.8 284 22-340 77-394 (414)
77 TIGR00841 bass bile acid trans 94.8 6.2 0.00014 41.5 27.0 108 32-152 7-119 (286)
78 TIGR00698 conserved hypothetic 94.8 0.8 1.7E-05 49.0 15.1 154 207-365 10-175 (335)
79 TIGR00832 acr3 arsenical-resis 94.6 5.3 0.00011 42.9 21.1 100 37-147 47-150 (328)
80 COG2205 KdpD Osmosensitive K+ 94.4 0.14 3.1E-06 59.4 8.9 126 549-693 248-374 (890)
81 COG2205 KdpD Osmosensitive K+ 94.3 0.26 5.5E-06 57.4 10.5 123 386-531 246-372 (890)
82 COG3180 AbrB Putative ammonia 94.3 9.1 0.0002 40.9 22.9 156 204-369 190-350 (352)
83 cd01984 AANH_like Adenine nucl 94.1 0.13 2.8E-06 43.2 6.0 34 552-586 1-34 (86)
84 TIGR00698 conserved hypothetic 94.0 5.7 0.00012 42.6 19.5 49 32-84 65-114 (335)
85 TIGR00844 c_cpa1 na(+)/h(+) an 94.0 0.92 2E-05 53.5 14.4 69 255-325 75-146 (810)
86 COG0786 GltS Na+/glutamate sym 93.7 6.4 0.00014 42.5 18.7 127 206-333 226-361 (404)
87 PF03616 Glt_symporter: Sodium 93.5 13 0.00029 40.5 22.4 88 223-317 247-342 (368)
88 PLN03159 cation/H(+) antiporte 93.4 1.3 2.8E-05 53.6 14.9 135 548-691 457-613 (832)
89 TIGR00831 a_cpa1 Na+/H+ antipo 93.0 0.77 1.7E-05 52.7 11.7 117 206-327 5-124 (525)
90 TIGR03136 malonate_biotin Na+- 92.4 1.5 3.2E-05 46.5 11.6 131 252-395 101-237 (399)
91 PF03956 DUF340: Membrane prot 92.1 2.7 6E-05 41.2 12.5 108 32-150 23-135 (191)
92 COG1346 LrgB Putative effector 91.7 7.8 0.00017 38.7 15.1 109 244-365 62-171 (230)
93 PF03977 OAD_beta: Na+-transpo 91.5 0.59 1.3E-05 48.9 7.4 109 254-371 67-179 (360)
94 TIGR03082 Gneg_AbrB_dup membra 91.3 3.3 7.2E-05 39.3 12.0 118 208-332 4-125 (156)
95 PF03601 Cons_hypoth698: Conse 90.7 5.7 0.00012 42.1 14.2 50 32-85 59-109 (305)
96 PF06826 Asp-Al_Ex: Predicted 90.1 6.6 0.00014 37.8 12.8 85 28-119 49-136 (169)
97 PF03616 Glt_symporter: Sodium 89.4 3.3 7.2E-05 45.2 11.5 115 255-370 66-187 (368)
98 TIGR00930 2a30 K-Cl cotranspor 89.1 67 0.0015 39.8 27.7 124 386-533 573-709 (953)
99 TIGR02432 lysidine_TilS_N tRNA 87.5 2.6 5.6E-05 41.2 8.4 38 551-588 1-38 (189)
100 PRK04288 antiholin-like protei 86.9 21 0.00046 36.0 14.4 107 246-365 67-174 (232)
101 PF01171 ATP_bind_3: PP-loop f 86.2 3.2 7E-05 40.3 8.2 39 551-589 1-39 (182)
102 PRK15475 oxaloacetate decarbox 86.1 0.8 1.7E-05 48.4 3.9 129 253-395 131-270 (433)
103 PRK15477 oxaloacetate decarbox 85.9 0.82 1.8E-05 48.4 3.9 129 253-395 131-270 (433)
104 PRK15476 oxaloacetate decarbox 85.9 0.82 1.8E-05 48.4 3.9 129 253-395 131-270 (433)
105 COG0025 NhaP NhaP-type Na+/H+ 85.5 13 0.00027 41.6 13.4 122 205-329 12-138 (429)
106 TIGR01625 YidE_YbjL_dupl AspT/ 85.1 9.3 0.0002 36.1 10.3 86 29-121 50-139 (154)
107 cd01992 PP-ATPase N-terminal d 85.1 4.4 9.6E-05 39.2 8.6 38 551-588 1-38 (185)
108 PF03956 DUF340: Membrane prot 83.9 5.5 0.00012 39.1 8.5 103 227-331 2-106 (191)
109 COG1883 OadB Na+-transporting 83.4 0.69 1.5E-05 47.2 2.0 125 254-395 82-214 (375)
110 PF00999 Na_H_Exchanger: Sodiu 83.2 0.37 8E-06 52.8 0.1 112 209-324 6-124 (380)
111 COG1646 Predicted phosphate-bi 83.0 55 0.0012 33.0 15.7 63 472-534 15-79 (240)
112 PRK05253 sulfate adenylyltrans 81.1 6.1 0.00013 41.8 8.2 42 550-591 28-69 (301)
113 COG3493 CitS Na+/citrate sympo 80.5 90 0.002 33.8 22.3 287 22-340 94-413 (438)
114 TIGR00659 conserved hypothetic 80.5 52 0.0011 33.2 14.0 83 279-365 86-168 (226)
115 cd01993 Alpha_ANH_like_II This 79.0 11 0.00023 36.4 8.7 39 551-589 1-41 (185)
116 PRK03818 putative transporter; 78.8 28 0.00062 40.2 13.3 85 28-120 56-143 (552)
117 PRK10711 hypothetical protein; 78.8 46 0.00099 33.7 13.1 83 279-365 87-169 (231)
118 TIGR00210 gltS sodium--glutama 78.1 1.2E+02 0.0025 33.6 17.3 113 255-368 66-185 (398)
119 TIGR00946 2a69 he Auxin Efflux 77.3 43 0.00094 35.6 13.6 112 24-147 202-314 (321)
120 TIGR01109 Na_pump_decarbB sodi 77.3 11 0.00024 39.6 8.4 111 252-371 59-179 (354)
121 COG2985 Predicted permease [Ge 77.0 4.5 9.7E-05 44.7 5.7 105 36-149 62-175 (544)
122 COG4651 RosB Kef-type K+ trans 75.9 12 0.00027 38.9 8.1 116 204-327 11-132 (408)
123 TIGR00210 gltS sodium--glutama 75.6 1.4E+02 0.0029 33.1 24.4 139 222-364 244-392 (398)
124 COG3180 AbrB Putative ammonia 75.4 49 0.0011 35.6 12.8 125 203-337 10-139 (352)
125 TIGR02039 CysD sulfate adenyly 75.4 9.9 0.00021 40.0 7.7 42 550-591 20-61 (294)
126 COG3329 Predicted permease [Ge 74.9 61 0.0013 33.9 12.7 122 223-347 16-138 (372)
127 PF03547 Mem_trans: Membrane t 74.5 19 0.00042 39.3 10.2 131 228-366 11-145 (385)
128 TIGR03802 Asp_Ala_antiprt aspa 73.7 20 0.00043 41.6 10.3 85 28-120 443-531 (562)
129 KOG2310 DNA repair exonuclease 72.6 6.9 0.00015 43.7 5.8 78 485-562 40-131 (646)
130 COG2855 Predicted membrane pro 71.9 11 0.00024 40.0 7.0 56 24-79 273-328 (334)
131 PRK12342 hypothetical protein; 71.3 12 0.00026 38.5 7.0 86 554-653 29-121 (254)
132 PF01012 ETF: Electron transfe 68.6 15 0.00032 34.9 6.7 27 560-586 15-41 (164)
133 PRK03359 putative electron tra 68.0 35 0.00075 35.2 9.5 109 554-675 30-148 (256)
134 PF01884 PcrB: PcrB family; I 67.0 1.5E+02 0.0032 30.0 16.3 91 475-573 10-108 (230)
135 PRK04972 putative transporter; 66.7 13 0.00028 43.1 6.8 86 28-120 438-526 (558)
136 COG0037 MesJ tRNA(Ile)-lysidin 66.2 40 0.00086 35.3 10.0 37 550-588 22-58 (298)
137 PRK12563 sulfate adenylyltrans 64.6 17 0.00037 38.5 6.6 44 550-593 38-81 (312)
138 PRK12460 2-keto-3-deoxyglucona 62.4 71 0.0015 33.8 10.6 49 36-84 195-243 (312)
139 TIGR01625 YidE_YbjL_dupl AspT/ 61.1 23 0.00049 33.5 6.2 93 224-318 22-121 (154)
140 TIGR03802 Asp_Ala_antiprt aspa 60.4 35 0.00075 39.6 8.8 96 224-322 416-518 (562)
141 PRK10660 tilS tRNA(Ile)-lysidi 59.7 50 0.0011 37.0 9.7 58 549-611 15-73 (436)
142 PF04172 LrgB: LrgB-like famil 59.6 2E+02 0.0043 28.9 13.2 83 279-365 76-158 (215)
143 COG3263 NhaP-type Na+/H+ and K 59.3 83 0.0018 34.8 10.5 110 215-326 23-135 (574)
144 COG0786 GltS Na+/glutamate sym 58.8 1.9E+02 0.0041 31.6 13.1 114 254-368 67-186 (404)
145 TIGR00840 b_cpa1 sodium/hydrog 56.7 61 0.0013 37.5 9.9 73 255-329 69-151 (559)
146 PRK09903 putative transporter 55.1 1.9E+02 0.0041 30.7 12.9 87 24-120 193-280 (314)
147 PRK03818 putative transporter; 55.0 1.9E+02 0.0041 33.5 13.6 82 28-117 428-514 (552)
148 PF05145 AmoA: Putative ammoni 53.6 1E+02 0.0022 33.0 10.3 132 226-367 2-136 (318)
149 COG1570 XseA Exonuclease VII, 53.5 15 0.00032 40.6 4.0 53 600-652 148-204 (440)
150 COG0679 Predicted permeases [G 53.0 2.3E+02 0.0049 30.1 13.0 139 225-371 11-152 (311)
151 COG3969 Predicted phosphoadeno 48.8 20 0.00044 37.9 3.9 38 549-586 27-65 (407)
152 cd01995 ExsB ExsB is a transcr 45.9 60 0.0013 30.8 6.6 33 551-587 1-33 (169)
153 TIGR00808 malonate_madM malona 45.7 59 0.0013 31.9 6.2 45 44-88 90-134 (254)
154 cd01986 Alpha_ANH_like Adenine 45.4 82 0.0018 27.1 6.8 34 552-589 1-34 (103)
155 PRK00286 xseA exodeoxyribonucl 45.0 25 0.00054 39.4 4.4 53 601-653 149-204 (438)
156 COG2086 FixA Electron transfer 44.9 1.4E+02 0.0031 30.8 9.4 110 554-677 31-149 (260)
157 PF02844 GARS_N: Phosphoribosy 43.4 45 0.00097 29.1 4.7 80 551-664 2-81 (100)
158 PRK04972 putative transporter; 42.6 1.7E+02 0.0037 33.9 10.7 77 34-118 61-140 (558)
159 PF02601 Exonuc_VII_L: Exonucl 42.5 36 0.00078 36.3 4.9 25 629-653 58-87 (319)
160 PF05982 DUF897: Domain of unk 41.5 1.2E+02 0.0026 32.3 8.2 71 3-86 189-262 (327)
161 PRK06806 fructose-bisphosphate 41.1 1.7E+02 0.0038 30.6 9.6 111 470-585 17-138 (281)
162 cd01712 ThiI ThiI is required 40.8 1.9E+02 0.0041 27.6 9.3 35 551-589 1-35 (177)
163 PF05684 DUF819: Protein of un 40.5 2.6E+02 0.0056 30.7 11.2 97 250-351 52-153 (378)
164 cd01713 PAPS_reductase This do 39.7 55 0.0012 30.5 5.3 38 551-589 1-38 (173)
165 PRK06801 hypothetical protein; 38.9 1.9E+02 0.0041 30.4 9.4 105 470-580 17-131 (286)
166 PRK04125 murein hydrolase regu 38.8 2.5E+02 0.0055 26.1 9.1 33 258-292 68-103 (141)
167 PF04348 LppC: LppC putative l 38.3 3.6E+02 0.0078 31.1 12.4 139 483-650 264-408 (536)
168 TIGR00884 guaA_Cterm GMP synth 38.1 1.3E+02 0.0028 32.0 8.2 36 550-588 17-52 (311)
169 PRK14561 hypothetical protein; 38.1 55 0.0012 32.2 5.1 32 551-587 2-33 (194)
170 PF01507 PAPS_reduct: Phosphoa 37.3 52 0.0011 31.0 4.7 35 551-589 1-35 (174)
171 PF01171 ATP_bind_3: PP-loop f 36.4 2.6E+02 0.0055 26.9 9.5 97 390-509 1-108 (182)
172 PF03547 Mem_trans: Membrane t 36.3 2.1E+02 0.0045 31.2 9.8 86 224-310 244-335 (385)
173 PRK08185 hypothetical protein; 35.6 2.2E+02 0.0048 29.9 9.2 104 470-580 12-125 (283)
174 PF06826 Asp-Al_Ex: Predicted 35.3 2.5E+02 0.0055 26.9 8.9 91 221-312 21-116 (169)
175 COG2201 CheB Chemotaxis respon 34.3 3.5E+02 0.0077 29.2 10.6 43 487-531 37-80 (350)
176 COG5505 Predicted integral mem 34.3 5.9E+02 0.013 27.0 23.4 295 28-358 55-370 (384)
177 cd01994 Alpha_ANH_like_IV This 34.0 1.2E+02 0.0026 29.8 6.7 34 551-588 1-34 (194)
178 PRK12737 gatY tagatose-bisphos 33.9 1.8E+02 0.004 30.4 8.4 66 470-537 17-86 (284)
179 PRK05835 fructose-bisphosphate 32.8 2.8E+02 0.006 29.5 9.5 105 470-580 16-131 (307)
180 PRK12857 fructose-1,6-bisphosp 32.0 2E+02 0.0044 30.2 8.3 65 471-537 18-86 (284)
181 COG2117 Predicted subunit of t 31.7 42 0.00092 31.7 2.8 32 551-586 2-33 (198)
182 PF13593 DUF4137: SBF-like CPA 31.7 3.6E+02 0.0078 28.7 10.3 90 226-318 7-98 (313)
183 COG3748 Predicted membrane pro 31.5 4.2E+02 0.009 28.2 10.1 40 255-294 226-265 (407)
184 PRK09796 PTS system cellobiose 30.7 8.4E+02 0.018 27.7 14.5 13 354-366 442-454 (472)
185 PRK09765 PTS system 2-O-a-mann 30.3 9.7E+02 0.021 28.3 18.0 27 166-192 417-443 (631)
186 PF02040 ArsB: Arsenical pump 30.1 8.1E+02 0.018 27.3 15.4 37 110-146 117-153 (423)
187 TIGR01521 FruBisAldo_II_B fruc 29.1 3.4E+02 0.0073 29.3 9.4 66 470-537 15-85 (347)
188 KOG1965 Sodium/hydrogen exchan 28.4 1.1E+02 0.0023 35.2 5.7 71 255-327 102-180 (575)
189 PRK09196 fructose-1,6-bisphosp 28.0 3.8E+02 0.0082 29.0 9.6 66 470-537 17-87 (347)
190 cd00947 TBP_aldolase_IIB Tagat 27.9 3.4E+02 0.0073 28.4 9.0 66 470-537 12-81 (276)
191 KOG1288 Amino acid transporter 27.0 1.1E+03 0.025 28.0 13.8 120 364-507 537-662 (945)
192 COG1606 ATP-utilizing enzymes 26.7 1.8E+02 0.004 29.8 6.5 34 549-582 17-50 (269)
193 PF07905 PucR: Purine cataboli 26.0 3.2E+02 0.007 24.4 7.6 86 417-506 22-108 (123)
194 TIGR01858 tag_bisphos_ald clas 25.9 3.1E+02 0.0066 28.8 8.3 65 471-537 16-84 (282)
195 cd01997 GMP_synthase_C The C-t 25.9 2.4E+02 0.0052 29.8 7.7 35 551-588 1-35 (295)
196 COG0175 CysH 3'-phosphoadenosi 25.3 2.1E+02 0.0045 29.6 7.0 36 552-591 42-77 (261)
197 PLN00200 argininosuccinate syn 25.1 1.5E+02 0.0032 32.8 6.1 36 550-588 6-41 (404)
198 PF13194 DUF4010: Domain of un 24.9 7E+02 0.015 24.8 17.6 52 99-153 27-78 (211)
199 PRK13399 fructose-1,6-bisphosp 24.8 4.6E+02 0.01 28.4 9.6 66 470-537 17-87 (347)
200 TIGR00237 xseA exodeoxyribonuc 24.4 90 0.002 34.9 4.4 24 630-653 174-199 (432)
201 PRK09824 PTS system beta-gluco 24.2 8.9E+02 0.019 28.6 12.5 16 416-431 483-498 (627)
202 TIGR02432 lysidine_TilS_N tRNA 23.8 5.6E+02 0.012 24.4 9.5 96 390-509 1-111 (189)
203 PRK12738 kbaY tagatose-bisphos 23.8 3.5E+02 0.0077 28.4 8.3 65 471-537 18-86 (286)
204 COG2431 Predicted membrane pro 23.7 8.5E+02 0.018 25.4 12.7 55 31-85 130-188 (297)
205 PF02844 GARS_N: Phosphoribosy 23.6 65 0.0014 28.1 2.4 24 484-507 49-72 (100)
206 PRK01821 hypothetical protein; 23.3 5.9E+02 0.013 23.4 9.1 32 259-292 71-105 (133)
207 TIGR00268 conserved hypothetic 23.1 1.3E+02 0.0028 30.8 5.0 36 549-588 12-47 (252)
208 PRK10696 tRNA 2-thiocytidine b 22.6 2E+02 0.0044 29.5 6.3 39 549-587 29-69 (258)
209 KOG0785 Isocitrate dehydrogena 22.2 92 0.002 32.6 3.5 74 566-650 184-258 (365)
210 cd01990 Alpha_ANH_like_I This 21.7 1.6E+02 0.0035 28.8 5.2 34 552-588 1-34 (202)
211 KOG2718 Na+-bile acid cotransp 21.6 2.1E+02 0.0045 31.2 6.2 46 37-83 117-162 (371)
212 COG2431 Predicted membrane pro 21.3 9.5E+02 0.021 25.1 15.2 48 284-331 166-213 (297)
213 TIGR02230 ATPase_gene1 F0F1-AT 21.3 2E+02 0.0044 25.0 4.9 39 69-107 51-89 (100)
214 PRK09195 gatY tagatose-bisphos 21.1 4.2E+02 0.009 27.8 8.2 65 471-537 18-86 (284)
215 PRK12911 bifunctional preprote 21.0 1.8E+03 0.04 28.5 14.5 16 177-192 1049-1064(1403)
216 PF03686 UPF0146: Uncharacteri 21.0 1.5E+02 0.0033 27.0 4.2 32 476-507 74-105 (127)
217 TIGR00366 conserved hypothetic 20.9 1.2E+03 0.026 26.1 12.6 34 339-372 181-214 (438)
218 COG4827 Predicted transporter 20.5 7.6E+02 0.017 24.5 9.1 44 33-76 9-55 (239)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2.8e-136 Score=1199.82 Aligned_cols=688 Identities=34% Similarity=0.608 Sum_probs=621.8
Q ss_pred CEEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 046591 1 MLAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLS 80 (711)
Q Consensus 1 ilaGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~ 80 (711)
|++|++|||+++|+++.+.+.+||.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|+.++++|+++|+++
T Consensus 74 IlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~ 153 (832)
T PLN03159 74 ILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAF 153 (832)
T ss_pred HHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999988889999988888999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCc
Q 046591 81 TVIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGI 160 (711)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~ 160 (711)
++++............+ +++|+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++.++...+.
T Consensus 154 ~~~l~~~~~~~~~~~~~-l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~--- 229 (832)
T PLN03159 154 SFIFHQVSRNVHQGTFI-LFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDS--- 229 (832)
T ss_pred HHHHhhcccccchhHHH-HHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 88774321111113456 89999999999999999999999999999999999999999999999998877654432
Q ss_pred chhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCC
Q 046591 161 GSINL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLI 239 (711)
Q Consensus 161 ~~~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~ 239 (711)
+...+ |.++..++|++++++++||++.|+.|+++++++.++.++.++++++++++++++.+|+|+++|||++|+++|+
T Consensus 230 ~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~- 308 (832)
T PLN03159 230 TSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN- 308 (832)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-
Confidence 12334 6777777888889999999999999999998888899999999999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHH
Q 046591 240 PPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLL 318 (711)
Q Consensus 240 ~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~ 318 (711)
+|+++++.+|++++++++|+|+||+++|+++|+. +.+...|..+++++++++++|+++++++++++|+|++|++.+|++
T Consensus 309 ~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~l 388 (832)
T PLN03159 309 GPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFL 388 (832)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5889999999999999999999999999999999 876545666777788899999999999999999999999999999
Q ss_pred hhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchhhhhhccccccccCCcccceeEEEEecc
Q 046591 319 LNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRRYVAYKRRTIQHTRHDAELRILACIYEE 398 (711)
Q Consensus 319 l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~~~~~~~r~i~~~~~~~e~rILv~i~~~ 398 (711)
||+||+++++++++|++.|+++++.|++++++++++|.+.+|+++++|||+|||..|++|++|+.++++|+|||+|+|++
T Consensus 389 m~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~ 468 (832)
T PLN03159 389 MNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTP 468 (832)
T ss_pred HhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhcCC-CCCCcEEEEEEeecccCCCchhhhccccCCCCCC---CCCCchHHHHHHHHHHHHhcCCceEEE
Q 046591 399 NNVATIINVLGASIF-PQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSS---SKPTKIDFILNAFRQFEQQSSGSLSLQ 474 (711)
Q Consensus 399 ~~~~~~l~la~~~~~-~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~f~~~~~~~~~~v~v~ 474 (711)
+|+++++++++.+++ +++|.++|++|++|+++|++|.+++|+.+++..+ +...++|++.++|+.|++++ ++|+++
T Consensus 469 ~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~ 547 (832)
T PLN03159 469 RNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQ 547 (832)
T ss_pred CcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEE
Confidence 999999999999988 8999999999999999999999999986533111 12345899999999999754 579999
Q ss_pred EEEEEccCCChhHHHHHhhhhcCccEEEeccccC----C-----chhHHHHHHHHhhcCCcceEEEeccCCccccccccc
Q 046591 475 CFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT----N-----SYVIKKITKKVLKMAPCSVGILFDRREFMNSRHIFT 545 (711)
Q Consensus 475 ~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~----~-----~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~~~~~ 545 (711)
++|++||+++||+|||++|+|+++|+||+||||. + +..+|.+|+||+++|||||||+||||... ..+...
T Consensus 548 ~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~-~~~~~~ 626 (832)
T PLN03159 548 PLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSG-ATRLAS 626 (832)
T ss_pred EEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCc-cccccc
Confidence 9999999999999999999999999999999981 1 45799999999999999999999999652 211122
Q ss_pred cCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCc--------------------chhhhhhHHHHH
Q 046591 546 HRSAINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATK--------------------DLIEEKNDLNLI 605 (711)
Q Consensus 546 ~~~~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~--------------------~~~~~~~d~~~l 605 (711)
....+||+++|+||+||||||+||+|||+|+++++||+||++++...+ ++.|+++||+++
T Consensus 627 ~~~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~ 706 (832)
T PLN03159 627 NQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYI 706 (832)
T ss_pred cccceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 334679999999999999999999999999999999999997643211 356788999999
Q ss_pred HHHHhccCCCCCeEEEEEeecCchhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCc
Q 046591 606 SGLRMSTMDSKNVRYIKHSVKEGSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSN 685 (711)
Q Consensus 606 ~~~~~~~~~~~~v~y~e~~v~~g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~ 685 (711)
+||+.++..++++.|.|+.|+||+|+++.+|+++++|||++|||+|+.+|++|+||+||+||||||+|||+|||+||+++
T Consensus 707 ~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~ 786 (832)
T PLN03159 707 NEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAAT 786 (832)
T ss_pred HHHHHhcCCCCceEEEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCc
Confidence 99999987778999999999999999999999988999999999998889999999999999999999999999999999
Q ss_pred ccEEEEeeec
Q 046591 686 ASVMVMQQQA 695 (711)
Q Consensus 686 ~svLvvqq~~ 695 (711)
+||||||||+
T Consensus 787 ~SVLVvQQ~~ 796 (832)
T PLN03159 787 VSVLVVQQYV 796 (832)
T ss_pred eeEEEEEeec
Confidence 9999999997
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-113 Score=989.17 Aligned_cols=690 Identities=36% Similarity=0.606 Sum_probs=623.3
Q ss_pred CEEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 046591 1 MLAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLS 80 (711)
Q Consensus 1 ilaGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~ 80 (711)
|++||+|||+.+|+++.+.+.+||.++...+++++.+|+++++|+.|+|+|.+.++|.+|++..||+.++++|+..|.++
T Consensus 54 il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~ 133 (769)
T KOG1650|consen 54 ILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGL 133 (769)
T ss_pred HHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhh
Confidence 47899999999999999999999988899999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhccCCC--CCc---hhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 046591 81 TVIVNQFDPL--DGE---LGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDI 155 (711)
Q Consensus 81 ~~~l~~~~~~--~~~---~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~ 155 (711)
...+.+.... +.. ..+. .++..++|.||||+++++|.|+|++++|+||+++++++++|+++|.++++..+....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~ 212 (769)
T KOG1650|consen 134 AFLLSDTKADKEDGALFLPFEI-LFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSE 212 (769)
T ss_pred hhhccccccccccccccccHHH-HHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhcc
Confidence 8777543321 111 1256 888899999999999999999999999999999999999999999999888887765
Q ss_pred cccCcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHH
Q 046591 156 QEAGIGSINL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMG-LIGFWGPIILG 233 (711)
Q Consensus 156 ~~~~~~~~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g-~~~~lGaf~~G 233 (711)
... +.... |.+...+++++++.+++||++.|+.||+|+++|.++.|...++..++.++.+++.++ .|+++|||+.|
T Consensus 213 ~~~--~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~G 290 (769)
T KOG1650|consen 213 LKL--SPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILG 290 (769)
T ss_pred CCC--cchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEE
Confidence 532 23444 888888899999999999999999999999999999999999999999999999998 89999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHH
Q 046591 234 VITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDA 312 (711)
Q Consensus 234 l~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a 312 (711)
+++|++||+++.+.||+|++.+++|+|+||+.+|+++|+. +.. |......+...+++|++++..++.++|+|+||+
T Consensus 291 l~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~ 367 (769)
T KOG1650|consen 291 LAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDS 367 (769)
T ss_pred EecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 9999999999999999999999999999999999999999 774 777788888999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchhhhhhccccccccCCcccceeE
Q 046591 313 LSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRRYVAYKRRTIQHTRHDAELRIL 392 (711)
Q Consensus 313 ~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~~~~~~~r~i~~~~~~~e~rIL 392 (711)
+++|++||+||.+|++.++.+++.++++++.|++++++++++|.++||+++.+|||.|+|.+|++|++|+.++++++|||
T Consensus 368 l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril 447 (769)
T KOG1650|consen 368 LALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRIL 447 (769)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCChHHHHHHHHhcCC-CCCCcEEEEEEeecccCCCchhhhccccCCCC-CCCCCCchHHHHHHHHHHHHhcCCc
Q 046591 393 ACIYEENNVATIINVLGASIF-PQRPMELHVLNLEEYVGHSLPLVISHRLDKMP-SSSKPTKIDFILNAFRQFEQQSSGS 470 (711)
Q Consensus 393 v~i~~~~~~~~~l~la~~~~~-~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~f~~~~~~~~~~ 470 (711)
.|+|.++++++++++++++.+ +++|.+++++|++|+.+|+.|++++|+.++.. .......++++..+|+.|++...++
T Consensus 448 ~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~ 527 (769)
T KOG1650|consen 448 TCLHGPENISGIINLLELSSGSLESPLSVYALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEG 527 (769)
T ss_pred EEecCCCcchHHHHHHHHcCCCCCCCcceeeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCc
Confidence 999999999999999999997 55699999999999999999999999876431 2223345678899999999854577
Q ss_pred eEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC---------CchhHHHHHHHHhhcCCcceEEEeccCCccccc
Q 046591 471 LSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT---------NSYVIKKITKKVLKMAPCSVGILFDRREFMNSR 541 (711)
Q Consensus 471 v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~---------~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~ 541 (711)
+.++++|+++|+.+||||||.+|.++++++|++|||+. ++..+|++|++|+++||||||+++|||.. +..
T Consensus 528 v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~-~~~ 606 (769)
T KOG1650|consen 528 VMVRTFTALSPEKLMHEDICTLALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLR-RSG 606 (769)
T ss_pred EEEEeehhhCChhhchhhhhHHHHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcc-ccc
Confidence 99999999999999999999999999999999999992 15679999999999999999999999721 111
Q ss_pred cccccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCc----chhhhhhHHHHHHHH-HhccCCCC
Q 046591 542 HIFTHRSAINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATK----DLIEEKNDLNLISGL-RMSTMDSK 616 (711)
Q Consensus 542 ~~~~~~~~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~----~~~~~~~d~~~l~~~-~~~~~~~~ 616 (711)
..+...+.++|++.|.||+|||||+++++||++|+++++||+|++.+++..+ +++++.+|++..+++ +....++.
T Consensus 607 ~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 686 (769)
T KOG1650|consen 607 VTQKRGSSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNL 686 (769)
T ss_pred ceecccceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchh
Confidence 1122336789999999999999999999999999999999999998754322 467788888888888 54444455
Q ss_pred CeEEE-EEeecCchhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEeeec
Q 046591 617 NVRYI-KHSVKEGSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQQA 695 (711)
Q Consensus 617 ~v~y~-e~~v~~g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq~~ 695 (711)
...|. |+.++++.|+.+.+|++.++|||++|||.++.+++.|+|++||+||||||+|||.++|+||.++.||||+|||.
T Consensus 687 ~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~ 766 (769)
T KOG1650|consen 687 DIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQL 766 (769)
T ss_pred hhhhhhHHHHhcchhHHHHHHHhccccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeee
Confidence 67788 69999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cc
Q 046591 696 SV 697 (711)
Q Consensus 696 ~~ 697 (711)
+.
T Consensus 767 ~~ 768 (769)
T KOG1650|consen 767 YS 768 (769)
T ss_pred cC
Confidence 64
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=2.1e-43 Score=405.18 Aligned_cols=378 Identities=16% Similarity=0.163 Sum_probs=295.4
Q ss_pred CEEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 046591 1 MLAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLS 80 (711)
Q Consensus 1 ilaGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~ 80 (711)
|++|+++||+++|.++ ..+.++.++++|++++||.+|+|+|++.+++.+|+++.+|..++++|+++++.+
T Consensus 36 ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~ 105 (621)
T PRK03562 36 LIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLF 105 (621)
T ss_pred HHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999875 245689999999999999999999999999999999999999999999988877
Q ss_pred HHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCc
Q 046591 81 TVIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGI 160 (711)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~ 160 (711)
+++++.. |..+ +++|.+++.||++++.++|+|+|+++++.||.+++.++++|+++|++++++..+...+...
T Consensus 106 ~~~~g~~------~~~a-l~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~- 177 (621)
T PRK03562 106 CMLLGLR------WQVA-LLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGAST- 177 (621)
T ss_pred HHHhCCC------HHHH-HHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc-
Confidence 7666432 5778 9999999999999999999999999999999999999999999999998876655421110
Q ss_pred chhhH-HHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhh
Q 046591 161 GSINL-LNLMSFMLIV----IFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVI 235 (711)
Q Consensus 161 ~~~~~-~~~~~~i~~~----~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~ 235 (711)
+.... +.++..++++ ++..++.||+++|+.+.. .+|.++..+++++++++++++.+|+|+++|||++|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~ 252 (621)
T PRK03562 178 TLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVL 252 (621)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 11121 2222222222 223345566666665442 3577888888999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHH
Q 046591 236 TPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALS 314 (711)
Q Consensus 236 l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~ 314 (711)
+++ .++++++++++++| .++|+|+||+++||++|+. +.+ .|+.++.++++.+++|++++++.++++|+++++++.
T Consensus 253 l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~--~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~ 328 (621)
T PRK03562 253 LAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLE--NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRW 328 (621)
T ss_pred hcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHH
Confidence 998 57899999999999 7999999999999999998 653 344455666678999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchhhhhhccccccccCCcccceeEEE
Q 046591 315 LGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRRYVAYKRRTIQHTRHDAELRILAC 394 (711)
Q Consensus 315 lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~~~~~~~r~i~~~~~~~e~rILv~ 394 (711)
+|++|+++|+++++++..+.+.|+++++.|+.+++++++|++++|+ +..+|+|...- ++.+...+...++.+-++++|
T Consensus 329 ~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~-l~~~~~~~~~~-~~~~~~~~~~~~~~~~~vII~ 406 (621)
T PRK03562 329 FAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPL-LLVLLDRLEQS-RTEEAREADEIDEQQPRVIIA 406 (621)
T ss_pred HHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHH-HhhhcccccccccccCcEEEE
Confidence 9999999999999999999999999999999999888776665554 44445542110 011111011111224577777
Q ss_pred EeccCChHHHHHHH
Q 046591 395 IYEENNVATIINVL 408 (711)
Q Consensus 395 i~~~~~~~~~l~la 408 (711)
-..+....+.+.+
T Consensus 407 -G~Gr~G~~va~~L 419 (621)
T PRK03562 407 -GFGRFGQIVGRLL 419 (621)
T ss_pred -ecChHHHHHHHHH
Confidence 4444555555544
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=404.34 Aligned_cols=346 Identities=14% Similarity=0.184 Sum_probs=293.8
Q ss_pred CEEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 046591 1 MLAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLS 80 (711)
Q Consensus 1 ilaGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~ 80 (711)
|++|+++||+++|..+ ..+.++.++++|++++||.+|+|+|++.+++.++..+..++.++++|+++++++
T Consensus 37 IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (558)
T PRK10669 37 LLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLGMAL 106 (558)
T ss_pred HHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999864 246789999999999999999999999999998888888888999999988887
Q ss_pred HHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc-cC
Q 046591 81 TVIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQE-AG 159 (711)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~-~~ 159 (711)
++.++.. +..+ +++|+++|.||++++.++|+|+|+++++.||+++++++++|+++|++++++..+..... ++
T Consensus 107 ~~~~~~~------~~~a-l~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~ 179 (558)
T PRK10669 107 SAVLGWS------LMTG-IVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGD 179 (558)
T ss_pred HHHhCCC------HHHH-HHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 7766432 4677 88999999999999999999999999999999999999999999999888765543211 10
Q ss_pred cchh----hH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHH-HHHhhchhhHHHHHHH
Q 046591 160 IGSI----NL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFV-SESMGLIGFWGPIILG 233 (711)
Q Consensus 160 ~~~~----~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~-~~~~g~~~~lGaf~~G 233 (711)
.+.. .. +.++..+++++++.++.|++++|+.++.++.+ .+|.++..++++++++++. ++.+|+|+++|||++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaG 258 (558)
T PRK10669 180 VGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSVLALALGIAFGAVELFDVSFALGAFFAG 258 (558)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 0111 22 44556667777788899999999999987654 5677787788888877764 6999999999999999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHH
Q 046591 234 VITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDA 312 (711)
Q Consensus 234 l~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a 312 (711)
+++|+ +|+++++.+...++ .++|+|+||+++|+++|+. +.+ .+..++.++++.+++|++++++.++++|+++|++
T Consensus 259 l~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a 334 (558)
T PRK10669 259 MVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTA 334 (558)
T ss_pred HHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH
Confidence 99998 46788888878776 7899999999999999998 643 3444555677789999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhhcc
Q 046591 313 LSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFYDT 368 (711)
Q Consensus 313 ~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p 368 (711)
+.+|++|++||+++++++..|++.|+++++.|+++++++++|++++|++.++..+.
T Consensus 335 ~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~ 390 (558)
T PRK10669 335 LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERY 390 (558)
T ss_pred HHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999888876543
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.1e-42 Score=398.87 Aligned_cols=341 Identities=20% Similarity=0.281 Sum_probs=280.2
Q ss_pred CEEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 046591 1 MLAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLS 80 (711)
Q Consensus 1 ilaGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~ 80 (711)
|++|+++||+++|.++ ..+.+..++++|++++||.+|+|+|++.+++.+|+++.+|..++++|+++++.+
T Consensus 36 ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~ 105 (601)
T PRK03659 36 LLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGL 105 (601)
T ss_pred HHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999875 235688999999999999999999999999999999999999999999877666
Q ss_pred HHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCc
Q 046591 81 TVIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGI 160 (711)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~ 160 (711)
+++++. +|..+ +++|++++.||++++.++|+|+|+++++.||++++..+++|+.+|++++++..+......+.
T Consensus 106 ~~~~g~------~~~~a-~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~ 178 (601)
T PRK03659 106 LMLTDF------SWQAA-VVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHF 178 (601)
T ss_pred HHHHcc------CHHHH-HHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 555432 15778 88999999999999999999999999999999999999999999999988766553221100
Q ss_pred chhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCC
Q 046591 161 GSINL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLI 239 (711)
Q Consensus 161 ~~~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~ 239 (711)
.+... +.++..++++++..++.||+++|+.+. +.+|.++..+++++++++++++.+|+|+++|||++|+++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~- 252 (601)
T PRK03659 179 DWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAE- 252 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-
Confidence 01111 112222222222334555666655433 24578888889999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHH
Q 046591 240 PPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLL 318 (711)
Q Consensus 240 ~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~ 318 (711)
.+++++++++++++ .++|+|+||+++||++|+. +.+ .|+.++.++++.+++|++++++.++++|+++++++.+|++
T Consensus 253 s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~ 329 (601)
T PRK03659 253 SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT--HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV 329 (601)
T ss_pred CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 57899999999998 7999999999999999999 654 4555666777788999999999999999999999999999
Q ss_pred hhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhhcc
Q 046591 319 LNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFYDT 368 (711)
Q Consensus 319 l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p 368 (711)
|+++|+++++++..+.+.|+++++.|+.+++++++|+++ +|++...|+|
T Consensus 330 L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~-tP~l~~~~~~ 378 (601)
T PRK03659 330 LSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMT-TPLLMKLIDK 378 (601)
T ss_pred HhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHhHH
Confidence 999999999999999999999999999998888876654 5565555655
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-41 Score=364.90 Aligned_cols=347 Identities=19% Similarity=0.286 Sum_probs=295.0
Q ss_pred CEEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchh-HHHHHHHHHHHHHHHHHH
Q 046591 1 MLAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRL-GIVIGIGSYLLPLIVTSL 79 (711)
Q Consensus 1 ilaGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~-~~~i~~~~~~~p~~~g~~ 79 (711)
+++|+++||..++... +..+.++.++++|++++||.+|+|+|++.+||++|+ +...+..++..|+.++..
T Consensus 37 llaGiilGp~~~~~~~---------~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (397)
T COG0475 37 LLAGIILGPWGLLLII---------ESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLL 107 (397)
T ss_pred HHHHHhcCcccccccC---------CchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 4789999995555432 457899999999999999999999999999999999 888888888899888765
Q ss_pred HHHH-hhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccc
Q 046591 80 STVI-VNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEA 158 (711)
Q Consensus 80 ~~~~-l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~ 158 (711)
..+. ++.. +..+ +++|.+++.||.++++++++|+|.++++.||.++++++++|+.+++++++...+...++.
T Consensus 108 ~~~~~~g~~------~~~a-l~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~ 180 (397)
T COG0475 108 LLLGILGLS------LIAA-LFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSG 180 (397)
T ss_pred HHHHHhccC------hHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 4443 3221 4668 999999999999999999999999999999999999999999999999999988766543
Q ss_pred CcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcC
Q 046591 159 GIGSINL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITP 237 (711)
Q Consensus 159 ~~~~~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~ 237 (711)
+...+ ..+....+|.++..+..|++.+|+.|+..+. +.+|..+..++.+++.+++++|.+|+|+++|||++|++++
T Consensus 181 --~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls 257 (397)
T COG0475 181 --SVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLS 257 (397)
T ss_pred --cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhc
Confidence 22224 4555566666666666678888888776543 3467889999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHH
Q 046591 238 LIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLG 316 (711)
Q Consensus 238 ~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lg 316 (711)
+.....++++++++++.+++|+|+||+++||.+|++ +.+ .+..++.++.++.++|++++++.++..|.+.|++...|
T Consensus 258 ~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~--~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g 335 (397)
T COG0475 258 ESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE--NLLLILLLVALAILGKILGAYLAARLLGFSKRLALGIG 335 (397)
T ss_pred ccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 975433799999999988899999999999999999 765 35557888888999999999999999999999999999
Q ss_pred HHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhhccc
Q 046591 317 LLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFYDTS 369 (711)
Q Consensus 317 l~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~ 369 (711)
+.++++|+++++.++.+.. +.++++.++..+.+++++|.+.+++.+.+++..
T Consensus 336 ~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~~ 387 (397)
T COG0475 336 LLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKRL 387 (397)
T ss_pred hhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998876 678899999998888888888777777766543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=5.1e-35 Score=334.64 Aligned_cols=350 Identities=13% Similarity=0.102 Sum_probs=283.7
Q ss_pred CEEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 046591 1 MLAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLS 80 (711)
Q Consensus 1 ilaGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~ 80 (711)
+++|+++||+++|.++ | +..+..+.++++|++++||..|+|+|++.+|+.+++++.+++.++++|++++...
T Consensus 37 il~GillGp~~lg~i~------~--~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~ 108 (562)
T PRK05326 37 LAIGMLAGEDGLGGIQ------F--DNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLF 108 (562)
T ss_pred HHHHHHhCccccCCcc------c--CcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999754 1 2356789999999999999999999999999999999999999999999885554
Q ss_pred HHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhcc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccC
Q 046591 81 TVIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKL-LNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAG 159 (711)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l-~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~ 159 (711)
++++... +|..+ +++|++++.|+++++.++++|.|+ +++++|+++.+++++||.++++++.++..+...+..+
T Consensus 109 ~~~l~g~-----~~~~a-lllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~ 182 (562)
T PRK05326 109 AHWLLGL-----DWLEG-LLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETG 182 (562)
T ss_pred HHHHhcC-----CHHHH-HHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCc
Confidence 4444333 26888 999999999999999999999995 7999999999999999999999888777665443220
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCC
Q 046591 160 IGSINLLNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLI 239 (711)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~ 239 (711)
.+....+.++..+++.++++++.++++.|+.++.... .++.+..+++++++++++++|.+|.|+++|+|++|+++++.
T Consensus 183 ~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~ 260 (562)
T PRK05326 183 LSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNR 260 (562)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCC
Confidence 0111113445555666777788899999999987431 24567888899999999999999999999999999999997
Q ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHH
Q 046591 240 PPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLL 318 (711)
Q Consensus 240 ~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~ 318 (711)
++..+.-.+++.+...+++.|+||+++|+.+|+. +.+. .+...++.+++.+++|++++++..+.+++++||+..+||.
T Consensus 261 ~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~ 339 (562)
T PRK05326 261 PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-ALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV 339 (562)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee
Confidence 6555444555555558899999999999999998 7532 2332333445677899999999999999999999999995
Q ss_pred hhcchhHHHHHhhhccccCCCC-chhhHHHHHHHHHHHHhHHHHHHHhhcc
Q 046591 319 LNCRGIYDIQIFSRSNRRKMLS-DESYGVMVMTAMLKSAIALPLLRVFYDT 368 (711)
Q Consensus 319 l~~kG~~~l~~~~~~~~~~~i~-~~~f~~lvl~~ll~t~i~~pl~~~~~~p 368 (711)
++||.++++++..+...|+.+ +..|+++.+++++|+.+.++.++.+.|.
T Consensus 340 -g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~ 389 (562)
T PRK05326 340 -GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARK 389 (562)
T ss_pred -cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHH
Confidence 899999999999999989886 4577888888888888888888876543
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=4.9e-36 Score=328.83 Aligned_cols=348 Identities=23% Similarity=0.398 Sum_probs=84.5
Q ss_pred CEEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHH-HHH
Q 046591 1 MLAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIV-TSL 79 (711)
Q Consensus 1 ilaGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~-g~~ 79 (711)
+++|+++||..++..+ |+ ....+.++++|+.++||.+|+|+|.+.+||++|+++.+++.++++|+++ ++.
T Consensus 27 i~~Gi~lg~~~~~~~~-------~~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (380)
T PF00999_consen 27 ILVGIVLGPSGLGLLE-------PD--NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFILVGFL 97 (380)
T ss_dssp ------------------------------S-SSHHHHS--SSHHHHTTGGGG---------------------------
T ss_pred HHheeehhhhhhhhcc-------ch--hhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhHHHHH
Confidence 5789999999988644 11 4678899999999999999999999999999999999999999999998 666
Q ss_pred HHHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccC
Q 046591 80 STVIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAG 159 (711)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~ 159 (711)
+++++. . .+.++..+ +++|.+++.||++++.++++|.+..+++.++++++++++||+++++++.+.....+....
T Consensus 98 ~~~~~~-~--~~~~~~~a-l~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~~- 172 (380)
T PF00999_consen 98 LSFFLF-I--LGLSWAEA-LLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLAQASGQ- 172 (380)
T ss_dssp --------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-------------
T ss_pred HHHhhc-c--chhhhHHH-hhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhhccccc-
Confidence 664321 0 11125778 999999999999999999999999999999999999999999999999888777622111
Q ss_pred cchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCC
Q 046591 160 IGSINL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPL 238 (711)
Q Consensus 160 ~~~~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~ 238 (711)
.+.... ..++..+....+..++.+.+..|+.|+. ++.++.+..+++++++.+++++|.+|.++++|+|++|+++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~ 249 (380)
T PF00999_consen 173 SSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILGLSGILGAFIAGLILSN 249 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccccccccceeeeeehcccc
Confidence 011111 2222222233333344444444444443 234577889999999999999999999999999999999996
Q ss_pred CCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-cc-CchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHH
Q 046591 239 IPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-ST-TLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLG 316 (711)
Q Consensus 239 ~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lg 316 (711)
.+.++++.++++++.++++.|+||+++|+++|++ +. +...|...+.+.+..+++|++++++.+++.|+++||+..+|
T Consensus 250 -~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 328 (380)
T PF00999_consen 250 -SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIG 328 (380)
T ss_dssp --------------------------------------------------------------------------HHHHTT
T ss_pred -ccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHH
Confidence 5677789999999977999999999999999998 63 33456667777777779999999999999999999999999
Q ss_pred HHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhh
Q 046591 317 LLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFY 366 (711)
Q Consensus 317 l~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~ 366 (711)
+.+++||+++++++..+.+.|.++++.+++++.++++++.+.|+.++.+.
T Consensus 329 ~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 329 LGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp TTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred HhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888887754
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=4.3e-32 Score=283.62 Aligned_cols=249 Identities=22% Similarity=0.343 Sum_probs=212.8
Q ss_pred CEEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHH-HHHHHH
Q 046591 1 MLAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLP-LIVTSL 79 (711)
Q Consensus 1 ilaGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p-~~~g~~ 79 (711)
|++|+++||+.+|.++ ..+.++.++++|+.+++|.+|+|+|++.+||++|++..+++.++++| +.+++.
T Consensus 23 il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (273)
T TIGR00932 23 LLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLL 92 (273)
T ss_pred HHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999865 23579999999999999999999999999999999999999999999 667776
Q ss_pred HHHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccC
Q 046591 80 STVIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAG 159 (711)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~ 159 (711)
+++++... +..+ +++|++++.||++++.++++|+|+.+++.||++++++++||+++|+++.+......+.+.
T Consensus 93 ~~~~~~~~------~~~~-~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~~- 164 (273)
T TIGR00932 93 LGHLLGLA------LGAA-VVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAST- 164 (273)
T ss_pred HHHHHCCC------HHHH-HHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-
Confidence 66665422 5778 999999999999999999999999999999999999999999999999888776653221
Q ss_pred cchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCC
Q 046591 160 IGSINL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPL 238 (711)
Q Consensus 160 ~~~~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~ 238 (711)
+...+ +.+...+++.++.+.+.|+..+|+.|+.++.++ +|.+...++.+++.+++++|.+|.|+++|||++|+++++
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aGl~~~~ 242 (273)
T TIGR00932 165 -EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLSMALGAFLAGVVLSE 242 (273)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcC
Confidence 22233 444455555666678888999999998876533 577888899999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHhhHHHHHHHhcccce
Q 046591 239 IPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVN 271 (711)
Q Consensus 239 ~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d 271 (711)
. +.++++.++++++. ++|.|+||+++|+++|
T Consensus 243 ~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 243 S-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred C-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 6 45788999999997 9999999999999986
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-29 Score=248.89 Aligned_cols=342 Identities=16% Similarity=0.224 Sum_probs=278.2
Q ss_pred EEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 046591 2 LAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLST 81 (711)
Q Consensus 2 laGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~ 81 (711)
+||++.||.--|... +......++++|++++||-+|++...+++...+..++.-++.++.+....|.+++
T Consensus 38 ~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~ 107 (408)
T COG4651 38 LAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLS 107 (408)
T ss_pred HHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHH
Confidence 578999998766643 3455669999999999999999999999988887777778888888888888888
Q ss_pred HHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccC-c
Q 046591 82 VIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAG-I 160 (711)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~-~ 160 (711)
..+++.+ ... +.+|.++|..|..|..|.|+|.++++++.||++++.-++.|+..++.+....+++.--+.+ .
T Consensus 108 ~~lgws~------~~g-lvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~ 180 (408)
T COG4651 108 SLLGWSF------GTG-IVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDV 180 (408)
T ss_pred HHcCCCc------ccc-eeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhccccc
Confidence 8887654 345 8889999999999999999999999999999999999999999998888776665422110 0
Q ss_pred ch----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHH-HHHhhchhhHHHHHHHh
Q 046591 161 GS----INL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFV-SESMGLIGFWGPIILGV 234 (711)
Q Consensus 161 ~~----~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~-~~~~g~~~~lGaf~~Gl 234 (711)
.. ... ++..+...|..++.++.|.+.+|+..+.... ...|.+...++++++..++- ++.+|.++.+|||++|+
T Consensus 181 ~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGM 259 (408)
T COG4651 181 GFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGM 259 (408)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHH
Confidence 11 123 5667888899999999999999999886432 23578888899988877765 47899999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-c-cCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHH
Q 046591 235 ITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-S-TTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDA 312 (711)
Q Consensus 235 ~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a 312 (711)
++.+. .++++..+..-++ .+.|.-+||+++||..|+. + .+ .+ .++..+++...+|-+..+...+.+|.|.|.+
T Consensus 260 vL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~--pl-~vlatllii~~gKs~aaf~ivr~Fg~~~~Ta 334 (408)
T COG4651 260 VLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQ--PL-AVLATLLIILFGKSVAAFFIVRAFGHPVRTA 334 (408)
T ss_pred Hhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcc--hH-HHHHHHHHHHhhhHHHHHHHHHHhCCcchHH
Confidence 99984 5777777777776 8899999999999999998 4 44 23 3555566677899999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhhc
Q 046591 313 LSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFYD 367 (711)
Q Consensus 313 ~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~ 367 (711)
+.++..+.+.|+++++++..|.+.+++++..-.. +++.-+.+++..|+.....+
T Consensus 335 Ltis~SLaqigEFsfIlaGLgi~l~llp~~gr~L-vlagailsIl~nPllf~~~d 388 (408)
T COG4651 335 LTISASLAQIGEFSFILAGLGIKLNLLPEAGRDL-VLAGAILSILLNPLLFALLD 388 (408)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHH-HHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999998555444 44444456666666655444
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.92 E-value=3.8e-23 Score=234.26 Aligned_cols=326 Identities=12% Similarity=0.040 Sum_probs=232.7
Q ss_pred EEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 046591 2 LAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLST 81 (711)
Q Consensus 2 laGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~ 81 (711)
++|+++||.++|..+... +.......++ ++++++.+.+|..|++++.+.+++.++..+.+.+.++.+.++++.+++
T Consensus 46 l~GiilGP~~l~~idP~~---~g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a 121 (810)
T TIGR00844 46 IFGLIVGPHCLNWFNPLS---WGNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFV 121 (810)
T ss_pred HHHHHhhhhhhccCChhh---cccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999998754210 0001233445 999999999999999999999999999999999999999998888877
Q ss_pred HHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHH---hhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc-
Q 046591 82 VIVNQFDPLDGELGESVQMVTGLESTISFYGILEILT---DMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQE- 157 (711)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~---el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~- 157 (711)
+++.... +|..+ +++|+++++|.+.....+++ ..+ ...++..++.+.+.+||.++++++.+...+.....
T Consensus 122 ~~Li~GL----~~~~A-LLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~ 195 (810)
T TIGR00844 122 WILVPGL----NFPAS-LLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGR 195 (810)
T ss_pred HHHHcCC----CHHHH-HHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCc
Confidence 7663222 27888 99999999999766666665 223 46788899999999999999988766654443211
Q ss_pred cCcchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-ccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHh
Q 046591 158 AGIGSINL--LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKR-LKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGV 234 (711)
Q Consensus 158 ~~~~~~~~--~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~-~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl 234 (711)
++.....| ..++..+++.++++++++.+..|+.++..+... ..+.++.+.++++++++.+++.+|.++++++|++|+
T Consensus 196 g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl 275 (810)
T TIGR00844 196 GGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGT 275 (810)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 10011111 233333344444444445455554443321111 124566777888888999999999999999999999
Q ss_pred hcCCCCCchhH-HHHHHHHHHHHhhHHHHHHHhcccceec-ccC----chhhHHHHHHHHHHHHhHHHHHHHHHhhc--C
Q 046591 235 ITPLIPPMGSL-LTDKMEAFVWSVFLPCFLINSGKGVNLF-STT----LTGFLIVEFLIWVATTVKLFAIIIPSLYY--K 306 (711)
Q Consensus 235 ~l~~~~~~~~~-l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~----~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~ 306 (711)
++.+..+.... -...+......++..++|+..|+.+... +.. ...|..+++.+++.++.|+.++++...+. .
T Consensus 276 ~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~ 355 (810)
T TIGR00844 276 AFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDI 355 (810)
T ss_pred HHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 99986433322 1223445557788999999999999877 643 12465566667777888988888764443 4
Q ss_pred CChhHHHHHHHHhhcchhHHHHHhhhccccCC
Q 046591 307 MPFMDALSLGLLLNCRGIYDIQIFSRSNRRKM 338 (711)
Q Consensus 307 ~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~ 338 (711)
.+|+|++++|| .++||+.++.++.++++.+.
T Consensus 356 ~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 356 KSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred CCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 68999999999 79999999999999877765
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.91 E-value=2.1e-22 Score=227.67 Aligned_cols=340 Identities=12% Similarity=0.070 Sum_probs=234.2
Q ss_pred EEEEEECccccCC-CccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 046591 2 LAGIALGPSFLGH-NEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLS 80 (711)
Q Consensus 2 laGiiLGPs~Lg~-~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~ 80 (711)
++|+++||..++. .+ + + . +.+..+++..++|..|+++|++.+||+++....+++.++++|++++...
T Consensus 30 l~Gi~lg~~~~~~~~~------~--~-~---~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~ 97 (525)
T TIGR00831 30 LAGLLLGLAGLLPEVP------L--D-R---EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFS 97 (525)
T ss_pred HHHHHHHhccccCCCC------C--C-H---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999765432 11 1 1 1 2344589999999999999999999999999999999999999886666
Q ss_pred HHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCc
Q 046591 81 TVIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGI 160 (711)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~ 160 (711)
.+++... +|..+ +++|+++|.|+++++.+++++.++ ++++.+++.+++++||..+++++.+......+.+. .
T Consensus 98 ~~~~~~l-----~~~~a-lllGails~TDpvav~~il~~~~~-p~rl~~il~gESllND~~alvlf~~~~~~~~~~~~-~ 169 (525)
T TIGR00831 98 LNWILGI-----PLALA-LILGAVLSPTDAVAVLGTFKSIRA-PKKLSILLEGESLLNDGAALVVFAIAVAVALGKGV-F 169 (525)
T ss_pred HHHHhcc-----cHHHH-HHHHHHhCCCCHHHHHHHHhcCCC-CHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcCCC-C
Confidence 5554332 26888 999999999999999999999886 78899999999999999999999888877653211 0
Q ss_pred chhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCC
Q 046591 161 GSINL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLI 239 (711)
Q Consensus 161 ~~~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~ 239 (711)
+.... +.++..++..+++++++..+..|+.|+..+. +.....+++++.+++++++|.+|.|+++++|++|+++++.
T Consensus 170 ~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~ 246 (525)
T TIGR00831 170 DPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFLLAERFHFSGVIAVVAAGLILTNY 246 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccc
Confidence 22222 3334444445555566666777777554332 2356778888999999999999999999999999999986
Q ss_pred CCc-h--hH---HHHHHHHHHHHhhHHHHHHHhcccceec-ccCch----hh-----HH---HHHHHHHHHHhHHHHHHH
Q 046591 240 PPM-G--SL---LTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLT----GF-----LI---VEFLIWVATTVKLFAIII 300 (711)
Q Consensus 240 ~~~-~--~~---l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~----~~-----~~---~~~ii~~~~~~K~~~~~l 300 (711)
.+. . .+ -.+.+-.....++.+++|+.+|+.+... ..... .+ .. .+++.......+++.++.
T Consensus 247 ~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~ 326 (525)
T TIGR00831 247 GRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMK 326 (525)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 1 11 1223333447889999999999998743 21100 01 00 111222233445544332
Q ss_pred HH--h-----hcCCChhHHHHHHHHhhcchhHHHHHhhhcc---ccC-------CCCchhhHHHHHHHHHHHHhHHHHHH
Q 046591 301 PS--L-----YYKMPFMDALSLGLLLNCRGIYDIQIFSRSN---RRK-------MLSDESYGVMVMTAMLKSAIALPLLR 363 (711)
Q Consensus 301 ~~--~-----~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~---~~~-------~i~~~~f~~lvl~~ll~t~i~~pl~~ 363 (711)
.. + ..+++||+.+.++| .+.||.+.++++..-- +.| .+-.-+|.+++++.++.....||+++
T Consensus 327 ~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~TllvqG~tlp~l~r 405 (525)
T TIGR00831 327 PFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILFSLLVQGISLPIFVK 405 (525)
T ss_pred HHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 21 1 12578999999999 6999999998864221 111 12223455666677777777788888
Q ss_pred Hh
Q 046591 364 VF 365 (711)
Q Consensus 364 ~~ 365 (711)
++
T Consensus 406 ~l 407 (525)
T TIGR00831 406 RK 407 (525)
T ss_pred hc
Confidence 75
No 13
>PRK11175 universal stress protein UspE; Provisional
Probab=99.90 E-value=1.3e-22 Score=215.80 Aligned_cols=271 Identities=13% Similarity=0.132 Sum_probs=179.6
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhc-
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQS- 467 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~- 467 (711)
.|||+|+|++++...+++.+..++ ++.+.+++++|+++-+....+.....+.. ........++..+.++++.+..
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~ 79 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLA-QRNGGKITAFLPIYDFSYEMTTLLSPDER---EAMRQGVISQRTAWIREQAKPYL 79 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHH-HhcCCCEEEEEeccCchhhhhcccchhHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999 67888999999885332211100000000 0000001112222333333221
Q ss_pred CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcceEEEeccCCcccccccc
Q 046591 468 SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCSVGILFDRREFMNSRHIF 544 (711)
Q Consensus 468 ~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~~~~ 544 (711)
..+++++..+.. .++.++.|++.|+++++||||||+|+. + +.++|++.+++++++||||+++.++...
T Consensus 80 ~~~~~~~~~v~~--~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~~~~------- 150 (305)
T PRK11175 80 DAGIPIEIKVVW--HNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQDWP------- 150 (305)
T ss_pred hcCCceEEEEec--CCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEecccccC-------
Confidence 245677665542 268899999999999999999999983 3 5678999999999999999998643211
Q ss_pred ccCcceeEEEeccCCcch-------HHHHHHHHHHhcCC-CeEEEEEEeeecCCC---------Ccchhhh---hhHHHH
Q 046591 545 THRSAINVCVIFLGGPDD-------REALAYGARMTGDQ-NAMLTIIRFFAVNHA---------TKDLIEE---KNDLNL 604 (711)
Q Consensus 545 ~~~~~~~I~v~f~gg~dd-------reAl~~a~rma~~~-~~~ltvl~v~~~~~~---------~~~~~~~---~~d~~~ 604 (711)
..++|++++++++++ +.|+++|.++|+.. ++++|++|+.+.... ..++..+ +..++.
T Consensus 151 ---~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (305)
T PRK11175 151 ---EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLA 227 (305)
T ss_pred ---CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHH
Confidence 246899999998653 67999999999998 999999999763211 0111111 111223
Q ss_pred HHHHHhccCCCCCeEEEEEeecCc---hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCC
Q 046591 605 ISGLRMSTMDSKNVRYIKHSVKEG---SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSD 681 (711)
Q Consensus 605 l~~~~~~~~~~~~v~y~e~~v~~g---~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d 681 (711)
++++..... ... .+..+.+| +++.+++++. ++||++||+|++ +|+.+| -+|+.++-++.+
T Consensus 228 l~~~~~~~~-~~~---~~~~v~~G~~~~~I~~~a~~~--~~DLIVmG~~~~------~~~~~~----llGS~a~~v~~~- 290 (305)
T PRK11175 228 MKALRQKFG-IDE---EQTHVEEGLPEEVIPDLAEHL--DAELVILGTVGR------TGLSAA----FLGNTAEHVIDH- 290 (305)
T ss_pred HHHHHHHhC-CCh---hheeeccCCHHHHHHHHHHHh--CCCEEEECCCcc------CCCcce----eecchHHHHHhc-
Confidence 444433221 111 11222223 3466777765 899999999986 355555 799999999999
Q ss_pred CCCcccEEEEeee
Q 046591 682 FKSNASVMVMQQQ 694 (711)
Q Consensus 682 ~~~~~svLvvqq~ 694 (711)
++||||||+..
T Consensus 291 --~~~pVLvv~~~ 301 (305)
T PRK11175 291 --LNCDLLAIKPD 301 (305)
T ss_pred --CCCCEEEEcCC
Confidence 99999999743
No 14
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.3e-18 Score=191.67 Aligned_cols=345 Identities=13% Similarity=0.144 Sum_probs=251.3
Q ss_pred EEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 046591 3 AGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTV 82 (711)
Q Consensus 3 aGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~ 82 (711)
.|++.||.+++..+. +....-+.+-.+.+..++|..|+|+|.+.++|+++....+++.+.+++.+......+
T Consensus 39 ~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~ 110 (429)
T COG0025 39 LGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAH 110 (429)
T ss_pred HHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778877777541 011112333399999999999999999999999999999999999999887766666
Q ss_pred HhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcch
Q 046591 83 IVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGS 162 (711)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~ 162 (711)
++.. +.++..+ +.+|+++|.|++.++.++.++.+. ..++..+..+++++||..+++++.+.......+... +.
T Consensus 111 ~l~~----~i~~~~a-~l~gAilspTDPv~v~~i~~~~~v-p~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~-~~ 183 (429)
T COG0025 111 WLLP----GIPLAAA-FLLGAILSPTDPVAVSPIFKRVRV-PKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAF-SL 183 (429)
T ss_pred HHhC----ChhHHHH-HHHhHHhcCCCchhhHHHHhcCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCC-ch
Confidence 6633 2236788 999999999999999999988774 889999999999999999999999888877643220 11
Q ss_pred hhH-HHHHHHH----HHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcC
Q 046591 163 INL-LNLMSFM----LIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITP 237 (711)
Q Consensus 163 ~~~-~~~~~~i----~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~ 237 (711)
... ..++..+ ++..+.+++.+.+.+|+.++.... ......+.+...+..+.++|.+|.+++++.+++|+...
T Consensus 184 ~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~---~~~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~ 260 (429)
T COG0025 184 GWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTS---PLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLG 260 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---hHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHh
Confidence 222 3333333 344444455555555554443111 34667889999999999999999999999999998774
Q ss_pred C-----CCCch-hHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcC----
Q 046591 238 L-----IPPMG-SLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYK---- 306 (711)
Q Consensus 238 ~-----~~~~~-~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~---- 306 (711)
+ ..+.. +...+.+......++.-+.|+..|.+++.. +... .++..++.+...+++|++++++..+..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~ 339 (429)
T COG0025 261 EAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-GLLGLLVALVAVLLARPLWVFLSLKGSNLKLR 339 (429)
T ss_pred hhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1 11212 223333444457888999999999999998 6542 3666788888889999999999988743
Q ss_pred --CChhHHHHHHHHhhcchhHHHHHhhhcccc------CCCCchhhHHHHHHHHHHHHhHHHHHHHhhc
Q 046591 307 --MPFMDALSLGLLLNCRGIYDIQIFSRSNRR------KMLSDESYGVMVMTAMLKSAIALPLLRVFYD 367 (711)
Q Consensus 307 --~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~------~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~ 367 (711)
.++++++.++| -++||.+.++++...... ..+-.-.+.+++.++++.+...+|+.++...
T Consensus 340 ~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 340 DPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred CCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Confidence 79999999999 599999999987654311 1222334555566666666667777777543
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.83 E-value=4.8e-19 Score=200.24 Aligned_cols=328 Identities=13% Similarity=0.147 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCchhhHHHHHHHHhhhc
Q 046591 32 SVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDP---LDGELGESVQMVTGLESTI 108 (711)
Q Consensus 32 ~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~---~~~~~~~~~~~l~~~~s~T 108 (711)
+.+-.+.+..++|..|+++|.+.++++.+....+|+.+.+++.++.....+++..... .+.+|..+ +.+|+++|.|
T Consensus 66 ~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~a-llfGAiiSaT 144 (559)
T TIGR00840 66 SYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDN-LLFGSLISAV 144 (559)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHH-HHHhHHhcCC
Confidence 4555567889999999999999999999999999999999998765555444322111 12247888 9999999999
Q ss_pred cHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH----HHHHHHHHHHHHHHHHHHH
Q 046591 109 SFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL----LNLMSFMLIVIFIVFIIRP 184 (711)
Q Consensus 109 s~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~v~r~ 184 (711)
++..+..++++.+. +.++-.++.+++++||..+++++.++..+...+..+.+...+ ..+....+..++++++...
T Consensus 145 DPVAVlai~~~~~v-~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~ 223 (559)
T TIGR00840 145 DPVAVLAVFEEYHV-NEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGF 223 (559)
T ss_pred chHHHHHHHHhcCC-CcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 889999999999999999999998887765421110011111 1111112225556666777
Q ss_pred HHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCC-----CCchhHHHHHHHHHHHHhhH
Q 046591 185 VMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLI-----PPMGSLLTDKMEAFVWSVFL 259 (711)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~-----~~~~~~l~~~l~~~~~~~~~ 259 (711)
+..++.|+....+ .....+++++.++++.++|.+|.+++++.+++|+.+.+. .+..+.-.+.+......++.
T Consensus 224 l~~~l~r~~~~~~---~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e 300 (559)
T TIGR00840 224 LVAFITRFTHHIR---QIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSE 300 (559)
T ss_pred HHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 7777777764432 355677888888999999999999999999999999652 22122222334334467888
Q ss_pred HHHHHHhcccceecccCchhhHHHHHHHHHHHHhHHHHHHHHHhh------cCCChhHHHHHHHHhhcchhHHHHHhhhc
Q 046591 260 PCFLINSGKGVNLFSTTLTGFLIVEFLIWVATTVKLFAIIIPSLY------YKMPFMDALSLGLLLNCRGIYDIQIFSRS 333 (711)
Q Consensus 260 PlFF~~~G~~~d~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~a~~lgl~l~~kG~~~l~~~~~~ 333 (711)
.+.|+..|+.+......+ .|..+++.+++.++.|+++++..++. .+++++|.+.++| .+.||.++++++...
T Consensus 301 ~~IFvlLGl~l~~~~~~~-~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l 378 (559)
T TIGR00840 301 TLIFIFLGVSLVTENHEW-NWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLL 378 (559)
T ss_pred HHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhC
Confidence 999999999763321111 34444555566678899888876543 3589999999998 699999999887654
Q ss_pred cccCCCC-----chhhHHHHHHHHHHHHhHHHHHHHhh
Q 046591 334 NRRKMLS-----DESYGVMVMTAMLKSAIALPLLRVFY 366 (711)
Q Consensus 334 ~~~~~i~-----~~~f~~lvl~~ll~t~i~~pl~~~~~ 366 (711)
-+.+.-. .-++.++++++++.....+|+++++-
T Consensus 379 ~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~ 416 (559)
T TIGR00840 379 DEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLK 416 (559)
T ss_pred CCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHHHHhC
Confidence 3222211 22333344455555566788888863
No 16
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.79 E-value=8.8e-18 Score=174.43 Aligned_cols=334 Identities=12% Similarity=0.106 Sum_probs=265.9
Q ss_pred EEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Q 046591 3 AGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTV 82 (711)
Q Consensus 3 aGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~ 82 (711)
.|++.|-.++|.++. +....-..++++++.+++|..|+..+++.+|...+++..++..|++++-.+....++
T Consensus 40 iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~ 111 (574)
T COG3263 40 IGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAA 111 (574)
T ss_pred HHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 477888888887752 346677889999999999999999999999999999999999999999887777777
Q ss_pred HhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcch
Q 046591 83 IVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGS 162 (711)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~ 162 (711)
++.+.. |.+. +++|++..+|.-+.+-.+|.+.++ |.+.+.+.--.+--||-.++++...++.+...+..+.++
T Consensus 112 ~ll~l~-----wle~-~LiGAiVgSTDAAAVF~lL~~~nl-~erv~stLEiESGtNDPmAvfLTitlieli~~get~l~~ 184 (574)
T COG3263 112 YLLNLD-----WLEG-LLIGAIVGSTDAAAVFSLLGGKNL-NERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSW 184 (574)
T ss_pred HHhccH-----HHHH-HHHHHhhccccHHHHHHHHccCCh-hhhhhhhEEeecCCCCceeeehhHHHHHHHhccccccCH
Confidence 776543 8899 999999999999999999988885 788888888889999999988866555555444221122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCc
Q 046591 163 INLLNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPM 242 (711)
Q Consensus 163 ~~~~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~ 242 (711)
.....++.-..+.++.++....+..|+++|+.-. +..|-.+++...++...+++.+|-++++..+++|+++.|.+-.
T Consensus 185 ~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~ 261 (574)
T COG3263 185 GFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIR 261 (574)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcch
Confidence 2223355667788888899999999999998432 4678889999999999999999999999999999999997533
Q ss_pred h-hHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhh
Q 046591 243 G-SLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLN 320 (711)
Q Consensus 243 ~-~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~ 320 (711)
. +.+.+-.+.+ .++.--+-|...|+.++++ +... ....+++.+...++.|.+++|+...-+++++||..+++| .+
T Consensus 262 ~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~i-avPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vG 338 (574)
T COG3263 262 ARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPI-AIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VG 338 (574)
T ss_pred hHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHh-hHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hh
Confidence 2 4566667776 6777778888999999998 6532 445567777788899999999999999999999999999 69
Q ss_pred cchhHHHHHhhhccccCCCCch-hhHHHHHHHHHHHHh
Q 046591 321 CRGIYDIQIFSRSNRRKMLSDE-SYGVMVMTAMLKSAI 357 (711)
Q Consensus 321 ~kG~~~l~~~~~~~~~~~i~~~-~f~~lvl~~ll~t~i 357 (711)
-||.+.++++..-.-.|+=+.+ .|++..+.++++-.+
T Consensus 339 LRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlli 376 (574)
T COG3263 339 LRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLI 376 (574)
T ss_pred cccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHH
Confidence 9999999999876655554433 445444444444333
No 17
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.76 E-value=8e-16 Score=165.03 Aligned_cols=301 Identities=16% Similarity=0.243 Sum_probs=194.3
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHH
Q 046591 30 VISVFESFGLI-YITFVTSVRADLSIMT---KSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVT 102 (711)
Q Consensus 30 ~l~~la~~Gl~-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~ 102 (711)
.+...-+=|+| +|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++-. .+....+ ... --+
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~----~~n~~~~-----~~~-~GW- 129 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYV----AVNLAGG-----GAL-RGW- 129 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHH----HHhCCch-----hhh-hhh-
Confidence 34455555554 7889999999554432 222222 4567888888886422 2322111 111 122
Q ss_pred HHhhhccHHHHHHHHHhhccc-cChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHHH
Q 046591 103 GLESTISFYGILEILTDMKLL-NSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIVF 180 (711)
Q Consensus 103 ~~~s~Ts~~vv~~iL~el~l~-~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 180 (711)
.+-+.|+.+....+|..+|-. ++.++...++.|++||+.+++++++++. ++ ..+ +.......+ ++
T Consensus 130 ~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt----~~-----i~~~~L~~a~~~~--~~-- 196 (423)
T PRK14853 130 AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT----SE-----LNLEALLLALVPL--AL-- 196 (423)
T ss_pred hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC----CC-----CCHHHHHHHHHHH--HH--
Confidence 234557788888999998854 8899999999999999999999988771 11 222 222222111 11
Q ss_pred HHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCC-----------CchhHHHHH
Q 046591 181 IIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIP-----------PMGSLLTDK 249 (711)
Q Consensus 181 v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~-----------~~~~~l~~~ 249 (711)
.|+.++. ++++.+.++++. +++.+.++..|+|+.+|+|++|+++|..+ +..++++++
T Consensus 197 ------l~~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~ 264 (423)
T PRK14853 197 ------FWLLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHR 264 (423)
T ss_pred ------HHHHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHH
Confidence 1233332 234456666654 35667889999999999999999999521 235689999
Q ss_pred HHHHHHHhhHHHH-HHHhccccee-c-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhc----------CCChhHHHHHH
Q 046591 250 MEAFVWSVFLPCF-LINSGKGVNL-F-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYY----------KMPFMDALSLG 316 (711)
Q Consensus 250 l~~~~~~~~~PlF-F~~~G~~~d~-~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~a~~lg 316 (711)
+++++..+++|+| |+..|.++|. . +.+...-.....+++..+++|.+|.+..++.. +++|++-..+|
T Consensus 265 L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~ 344 (423)
T PRK14853 265 LRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVA 344 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHH
Confidence 9999999999999 9999999986 4 42110112456777888899999988876543 57899999998
Q ss_pred HHhhcchhHHHHHhhhccc-cC-CCCchhhHHHHHHHHHHHHhHHHHHHHhhc
Q 046591 317 LLLNCRGIYDIQIFSRSNR-RK-MLSDESYGVMVMTAMLKSAIALPLLRVFYD 367 (711)
Q Consensus 317 l~l~~kG~~~l~~~~~~~~-~~-~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~ 367 (711)
++-+.-=.+++.+++.+.+ .. .+++.=..+ .+.++++..++-.+++...+
T Consensus 345 ~L~GIGFTmSlFI~~LAf~~~~~~~~~aKigi-l~~S~~s~~~G~~~l~~~~~ 396 (423)
T PRK14853 345 LLAGIGFTVSLLIGELAFGGGSARDDAVKVGV-LTGSLIAALLASVLLRLRNR 396 (423)
T ss_pred HHHHHHHHHHHHHHHhhcCCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 8666666788888998883 22 222222222 33444444444445554433
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.8e-13 Score=137.82 Aligned_cols=320 Identities=11% Similarity=0.065 Sum_probs=222.3
Q ss_pred EEEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 046591 2 LAGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLST 81 (711)
Q Consensus 2 laGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~ 81 (711)
+.|+++||+++++..+.. -.+.......++.+-+..-.|.+++|+.-+.+.++++..+..-..-++.-+++.+++.
T Consensus 46 itGlI~Gphvlnlfdp~~----wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fv 121 (467)
T KOG4505|consen 46 ITGLIFGPHVLNLFDPNS----WGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFV 121 (467)
T ss_pred hhheeechhhhhhcCCcc----ccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999854211 0112345667888889999999999999999999999877655544444445555555
Q ss_pred HHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHHhhcccc---ChhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccc
Q 046591 82 VIVNQFDPLDGELGESVQMVTGLESTISFYGILEILTDMKLLN---SELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEA 158 (711)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~el~l~~---s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~ 158 (711)
+.+.... +...+ +.++++++.|.+...+.+..+-+..+ .++..+..+.+..||..++.++-+..-+...+..
T Consensus 122 y~l~p~l----nf~~S-l~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~ 196 (467)
T KOG4505|consen 122 YALIPNL----NFLTS-LLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPR 196 (467)
T ss_pred HHHhccc----cHHHH-HHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCch
Confidence 5554222 13556 88999999998555555666555443 4577788999999999999888776665443211
Q ss_pred CcchhhH--HHHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q 046591 159 GIGSINL--LNLMS----FMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIIL 232 (711)
Q Consensus 159 ~~~~~~~--~~~~~----~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~ 232 (711)
-.....| ..++. .+++..+++++.|..+++--++.--+ .|+++.+-+++.++|+.+.+.+|.+-.+-.|.|
T Consensus 197 r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfA 273 (467)
T KOG4505|consen 197 RKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLIFYVVLALFCMGIGTIIGVDDLLVSFFA 273 (467)
T ss_pred hccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHhhhhheechhHHHHHHHh
Confidence 0000122 22222 33445555666666666655554333 478888999999999999999999999999999
Q ss_pred HhhcCCCCCchhHH-HHHHHHHHHHhhHHHHHHHhcccceec-ccCc----hhhHHHHHHHHHHHHhHHHHHHHHHhhc-
Q 046591 233 GVITPLIPPMGSLL-TDKMEAFVWSVFLPCFLINSGKGVNLF-STTL----TGFLIVEFLIWVATTVKLFAIIIPSLYY- 305 (711)
Q Consensus 233 Gl~l~~~~~~~~~l-~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~----~~~~~~~~ii~~~~~~K~~~~~l~~~~~- 305 (711)
|++++...-+..+. ..++..+...++--.||++.|..++++ ++.. ..|-.+.+-+.+.+.-|+-++++.-..-
T Consensus 274 Gi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iP 353 (467)
T KOG4505|consen 274 GIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIP 353 (467)
T ss_pred hhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCc
Confidence 99999987666544 446677777788889999999999987 6532 2455555555555566666665542211
Q ss_pred C-CChhHHHHHHHHhhcchhHHHHHhhhcc
Q 046591 306 K-MPFMDALSLGLLLNCRGIYDIQIFSRSN 334 (711)
Q Consensus 306 ~-~~~~~a~~lgl~l~~kG~~~l~~~~~~~ 334 (711)
. .+|||+++.|. .+|.|.-++..+-.+.
T Consensus 354 dikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 354 DIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred chhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 1 36999999999 7999999988877663
No 19
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.54 E-value=4e-14 Score=130.61 Aligned_cols=128 Identities=19% Similarity=0.314 Sum_probs=98.7
Q ss_pred eeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 046591 390 RILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQSSG 469 (711)
Q Consensus 390 rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 469 (711)
|||||+|++++...+++.+..++ +..+.+++++|+++.+..... +... ......++..+.+.++.+. .
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la-~~~~~~v~ll~v~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~--~ 68 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALA-RAQNGEIIPLNVIEVPNHSSP----SQLE-----VNVQRARKLLRQAERIAAS--L 68 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHh-hcCCCeEEEEEEEecCCCCCc----chhH-----HHHHHHHHHHHHHHHHhhh--c
Confidence 69999999999999999999999 578899999999997654322 1000 0112344555555555433 3
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcceEEE
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
++++++.+..+ +++.++||+.|+++++|+||||+|+. . +.++||++++|++++||||+++
T Consensus 69 g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 69 GVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEe
Confidence 56777776554 57999999999999999999999993 2 5679999999999999999987
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.52 E-value=1.4e-12 Score=137.50 Aligned_cols=268 Identities=17% Similarity=0.210 Sum_probs=167.6
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhhHHHHH
Q 046591 30 VISVFESFGLI-YITFVTSVRADLSIMT---KSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPL-DGELGESVQMV 101 (711)
Q Consensus 30 ~l~~la~~Gl~-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~-~~~~~~~~~~l 101 (711)
.+...-+=|+| +|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ +..+....+. ...|
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~i----y~~~n~~~~~~~~GW------- 119 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALI----YLAFNANDPITREGW------- 119 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH----HhheecCCCcccCcc-------
Confidence 45555555555 7889999999887764 333443 45577778888764 2223221111 1112
Q ss_pred HHHhh-hccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHH
Q 046591 102 TGLES-TISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIV 179 (711)
Q Consensus 102 ~~~~s-~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 179 (711)
++-++ -++|..-...+--.+ ....+....++-|++||+.+++++++++. ++ ..+ +.......+.
T Consensus 120 ~IP~ATDiAFalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~------i~~~~L~~a~~~~~---- 185 (373)
T TIGR00773 120 AIPAATDIAFALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYT---ND------LSMAALLVAAVAIA---- 185 (373)
T ss_pred ccccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecC---CC------CCHHHHHHHHHHHH----
Confidence 11111 123333222221222 35566788899999999999988887663 11 223 3333222211
Q ss_pred HHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCch----hHHHHHHHHHHH
Q 046591 180 FIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPMG----SLLTDKMEAFVW 255 (711)
Q Consensus 180 ~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~~----~~l~~~l~~~~~ 255 (711)
..|+.+|.. +++...+.++.+++ .+++ ...|+|+.+|+|++|+++|..++.. +++++.+++.+.
T Consensus 186 ------~l~~~~~~~----v~~~~~y~~lgvll-W~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~ 253 (373)
T TIGR00773 186 ------VLAVLNRCG----VRRLGPYMLVGVIL-WFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVA 253 (373)
T ss_pred ------HHHHHHHcC----CchhhHHHHHHHHH-HHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHH
Confidence 122334432 23344444444333 3333 7999999999999999999864433 456666667788
Q ss_pred HhhHHHH-HHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhc----------CCChhHHHHHHHHhhcch
Q 046591 256 SVFLPCF-LINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYY----------KMPFMDALSLGLLLNCRG 323 (711)
Q Consensus 256 ~~~~PlF-F~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~a~~lgl~l~~kG 323 (711)
.+++|+| |+..|.++|.. +.....+ ....+++..+++|.+|++..++.. |++|++-..+|++-+.-=
T Consensus 254 ~lilPlFAFanAGv~l~~~~~~~~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGF 332 (373)
T TIGR00773 254 YLILPLFAFANAGVSLQGVSLNGLTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGF 332 (373)
T ss_pred HHHHHHHHHHhcCeeeecCcchhhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999 99999999876 5432223 467788889999999999987653 568999988888666666
Q ss_pred hHHHHHhhhccc
Q 046591 324 IYDIQIFSRSNR 335 (711)
Q Consensus 324 ~~~l~~~~~~~~ 335 (711)
.+++.+.+.+.+
T Consensus 333 TmSlfI~~LAf~ 344 (373)
T TIGR00773 333 TMSIFIASLAFG 344 (373)
T ss_pred HHHHHHHHHhcC
Confidence 788888888874
No 21
>PRK15005 universal stress protein F; Provisional
Probab=99.46 E-value=3e-13 Score=127.12 Aligned_cols=136 Identities=14% Similarity=0.155 Sum_probs=94.1
Q ss_pred ceeEEEEeccCC--hHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHh
Q 046591 389 LRILACIYEENN--VATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQ 466 (711)
Q Consensus 389 ~rILv~i~~~~~--~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 466 (711)
.|||+|+|++++ ...+++.+..++ ++.+.+++++|+++............... ........++..+.++++.+.
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la-~~~~~~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 78 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEA-KIDDAEVHFLTVIPSLPYYASLGLAYSAE---LPAMDDLKAEAKSQLEEIIKK 78 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHH-hccCCeEEEEEEEccCccccccccccccc---chHHHHHHHHHHHHHHHHHHH
Confidence 479999999998 578999888888 57888999999998532211100000000 000011223334455555543
Q ss_pred c-CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCC--chhHHHHHHHHhhcCCcceEEE
Q 046591 467 S-SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 467 ~-~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
. ..+++++..+.. ++..+.|++.|+++++||||||.|+++ +.++||+.++|++++||||+++
T Consensus 79 ~~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 79 FKLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred hCCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCCCCEEEe
Confidence 2 234556655543 789999999999999999999999744 5678999999999999999996
No 22
>PRK15456 universal stress protein UspG; Provisional
Probab=99.43 E-value=4.6e-13 Score=125.67 Aligned_cols=134 Identities=10% Similarity=0.048 Sum_probs=93.2
Q ss_pred ceeEEEEeccC--ChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHh
Q 046591 389 LRILACIYEEN--NVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQ 466 (711)
Q Consensus 389 ~rILv~i~~~~--~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 466 (711)
.|||+|+|+++ +...+++.+..++ +.. .+++++|+++.+... .. ...............++..+.++++.+.
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la-~~~-~~l~llhv~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLA-QDD-GVIHLLHVLPGSASL-SL---HRFAADVRRFEEHLQHEAEERLQTMVSH 76 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHH-hcC-CeEEEEEEecCcccc-cc---cccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 47999999984 8999999999888 454 589999999754211 10 0000000000001123333455555543
Q ss_pred c-CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCC--chhHHHHHHHHhhcCCcceEEE
Q 046591 467 S-SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 467 ~-~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
. ..+++++..+.. ++..++|++.|+++++||||||.||.+ +.++||+.++|++++||||+|+
T Consensus 77 ~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 77 FTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred hCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEEEe
Confidence 2 245677766644 689999999999999999999999943 5678999999999999999996
No 23
>PRK09982 universal stress protein UspD; Provisional
Probab=99.40 E-value=1.3e-12 Score=122.60 Aligned_cols=133 Identities=8% Similarity=0.052 Sum_probs=91.4
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhcC
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQSS 468 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 468 (711)
.|||+|+|+++++..+++.+..++ ++.+.+++++|+++......+.....+.. .......++..+.++++.+..
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA-~~~~a~l~llhV~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~- 77 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELA-RHNDAHLTLIHIDDGLSELYPGIYFPATE----DILQLLKNKSDNKLYKLTKNI- 77 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHH-HHhCCeEEEEEEccCcchhchhhhccchH----HHHHHHHHHHHHHHHHHHHhc-
Confidence 479999999999999999999999 68899999999987532111100000000 000011222233444444332
Q ss_pred CceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCC-chhHHHHHHHHhhcCCcceEEE
Q 046591 469 GSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN-SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 469 ~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~-~~~~gs~~~~Vl~~ApC~V~il 531 (711)
+...++..+.. ++..+.|++.|++.++||||||.|+++ +..++ ++++|+++|+|||+|+
T Consensus 78 ~~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 78 QWPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHHHSFINRLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred CCCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCChhHHHHHHH-HHHHHHhcCCCCEEEe
Confidence 22334444444 789999999999999999999988655 55565 9999999999999997
No 24
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.39 E-value=1.8e-12 Score=121.86 Aligned_cols=135 Identities=5% Similarity=0.026 Sum_probs=89.9
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhcC
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQSS 468 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 468 (711)
.|||+|+|++++...+++.+..++ +..+.+++++|+.+-.....+... +... ........++..+.++++.+.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~l~~~~~~-- 76 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMA-RPYNAKVSLIHVDVNYSDLYTGLI--DVNL--GDMQKRISEETHHALTELSTN-- 76 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHH-HhhCCEEEEEEEccChhhhhhhhh--hcch--HHHHHHHHHHHHHHHHHHHHh--
Confidence 479999999999999999999998 577889999999431111000000 0000 000001123333445555443
Q ss_pred CceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCCchhHHHHHHHHhhcCCcceEEEe
Q 046591 469 GSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTNSYVIKKITKKVLKMAPCSVGILF 532 (711)
Q Consensus 469 ~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~~~~~gs~~~~Vl~~ApC~V~ilv 532 (711)
.++++..... ..++.++.|++.|+++++||||||.|+.....+||+.++|+++|||||+++.
T Consensus 77 ~~~~~~~~~~--~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 77 AGYPITETLS--GSGDLGQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred CCCCceEEEE--EecCHHHHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHhhCCCCEEEec
Confidence 2344322221 2278999999999999999999999974322378999999999999999984
No 25
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.34 E-value=4.5e-12 Score=119.41 Aligned_cols=138 Identities=9% Similarity=0.103 Sum_probs=93.0
Q ss_pred eeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhc-C
Q 046591 390 RILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQS-S 468 (711)
Q Consensus 390 rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~-~ 468 (711)
+||+|+|.++++..+++.+..++ ++.+.+++++|+++.+..........+.. ........++..+.++++.+.. .
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a-~~~~~~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNL-ATKGQTIVLVHVHPPITSIPSSSGKLEVA---SAYKQEEDKEAKELLLPYRCFCSR 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhc-cCCCCcEEEEEeccCcccCCCCccchHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 59999999999999999999988 57788999999997542211000000000 0000011122333344433221 2
Q ss_pred CceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHH-HHHHHHhhcCC--cceEEEec
Q 046591 469 GSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIK-KITKKVLKMAP--CSVGILFD 533 (711)
Q Consensus 469 ~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~g-s~~~~Vl~~Ap--C~V~ilvd 533 (711)
.++.++..+... ++..+.|++.|++.++|+||||.|+. + +.++| |+.++|++++| |||+++.|
T Consensus 77 ~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 77 KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeC
Confidence 456666665442 47899999999999999999999994 3 45567 69999999999 99999743
No 26
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.1e-10 Score=127.67 Aligned_cols=322 Identities=11% Similarity=0.057 Sum_probs=210.0
Q ss_pred HHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHH
Q 046591 39 LIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLI-VTSLSTVIVNQFDPLDGELGESVQMVTGLESTISFYGILEIL 117 (711)
Q Consensus 39 l~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~-~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL 117 (711)
+--+.|..|.+|+.+.++|+......+++.|..+... +|.++.++.......+..+..+ +.+|+.+|.|.+..+..++
T Consensus 106 LPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~-L~fGaliSATDPVtvLaIf 184 (575)
T KOG1965|consen 106 LPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDC-LAFGALISATDPVTVLAIF 184 (575)
T ss_pred hchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHH-HHHhhHhcccCchHHHHHH
Confidence 4457799999999999999999999999998887754 4555554433222223447889 9999999999999999999
Q ss_pred HhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhh--H-HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 046591 118 TDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSIN--L-LNLMSFMLIVIFIVFIIRPVMVWMMRQTP 194 (711)
Q Consensus 118 ~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~--~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~ 194 (711)
+|++- ..++=.++-+.+++||..+++++..+......... ++.. . ..++........++...+.+-..+.|.+.
T Consensus 185 nel~v-d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~--~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~ 261 (575)
T KOG1965|consen 185 NELGV-DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLN--DWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLY 261 (575)
T ss_pred HHhCC-CcceeeeeecchhccchhHHHHHHHHHHHccCCch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 56777889999999999999999888776554321 1111 1 12222211222222333333333334432
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCC-----CchhHHHHHHHHHHHHhhHHHHHHHhccc
Q 046591 195 EGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIP-----PMGSLLTDKMEAFVWSVFLPCFLINSGKG 269 (711)
Q Consensus 195 ~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~-----~~~~~l~~~l~~~~~~~~~PlFF~~~G~~ 269 (711)
-++ -......+++.+....++++|.+|+++++.-+..|+.+.+.. +.++.-.+.+-.+...+.--+-|+++|+.
T Consensus 262 l~~-~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~ 340 (575)
T KOG1965|consen 262 LRR-TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLS 340 (575)
T ss_pred hcC-CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 221 234677888889999999999999999999999999998852 22233333333334667777889999963
Q ss_pred -ceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcC----------CChhHHHHHHHHhhcchhHHHHHhhhc-ccc
Q 046591 270 -VNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYK----------MPFMDALSLGLLLNCRGIYDIQIFSRS-NRR 336 (711)
Q Consensus 270 -~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~----------~~~~~a~~lgl~l~~kG~~~l~~~~~~-~~~ 336 (711)
++.. .. +...+.+....++.+++|..-.+-.+.+.+ .|.++-..+.|.-.-||.++++++..- .+.
T Consensus 341 ~f~~~k~~-~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~ 419 (575)
T KOG1965|consen 341 AFDFQKHV-YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDS 419 (575)
T ss_pred Hhccccee-eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcccc
Confidence 3333 22 111233455555666777666554444433 344444566665458999998886432 111
Q ss_pred -----CCCCchhhHHHHHHHHHHHHhHHHHHHHhh
Q 046591 337 -----KMLSDESYGVMVMTAMLKSAIALPLLRVFY 366 (711)
Q Consensus 337 -----~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~ 366 (711)
..+-..+..++++.+++....+.|+++++-
T Consensus 420 ~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~ 454 (575)
T KOG1965|consen 420 PHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLM 454 (575)
T ss_pred ccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhc
Confidence 233344445555666666777899999974
No 27
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.19 E-value=1.2e-10 Score=106.43 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=89.3
Q ss_pred eeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 046591 390 RILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQSSG 469 (711)
Q Consensus 390 rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 469 (711)
|||+|+|+++....+++.+..++ ++.+.+++++|+++-... . . ....++.++.+.+..++ .
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la-~~~~~~l~ll~v~~~~~~--~----~----------~~~~~~~l~~~~~~~~~--~ 61 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLA-DRLKAPWYVVYVETPRLN--R----L----------SEAERRRLAEALRLAEE--L 61 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHH-HHhCCCEEEEEEecCccc--c----C----------CHHHHHHHHHHHHHHHH--c
Confidence 69999999999999999999999 578889999999863211 0 0 01223444444444332 1
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCC---chhHHHHHHHHhhcC-CcceEEE
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN---SYVIKKITKKVLKMA-PCSVGIL 531 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~---~~~~gs~~~~Vl~~A-pC~V~il 531 (711)
+++. .+..+ ++..+.|++.++++++|+||||+|+.+ +.++||..++|+++| ||||.|+
T Consensus 62 ~~~~--~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 62 GAEV--VTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CCEE--EEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 2332 23333 578999999999999999999999843 667999999999999 9999985
No 28
>PRK10116 universal stress protein UspC; Provisional
Probab=99.18 E-value=1.3e-10 Score=108.84 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=90.8
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhcC
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQSS 468 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 468 (711)
.|||+++|.+++...+++.+..++ ++.+.+++++|+++.+....... .... ........++..+.++++.+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~l~~~~~~-- 75 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIA-RPVNGKISLITLASDPEMYNQFA--APML---EDLRSVMQEETQSFLDKLIQD-- 75 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHH-HHhCCEEEEEEEccCcccchhhh--HHHH---HHHHHHHHHHHHHHHHHHHHh--
Confidence 589999999999999999999998 57788999999987542111100 0000 000001122333445554433
Q ss_pred CceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CCchhHHHHHHHHhhcCCcceEEEec
Q 046591 469 GSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TNSYVIKKITKKVLKMAPCSVGILFD 533 (711)
Q Consensus 469 ~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~~~~~gs~~~~Vl~~ApC~V~ilvd 533 (711)
.+++...... ..++..+.|++.|+++++||||||.|+ ++-.-++++.++|++++||||+++..
T Consensus 76 ~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 76 ADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred cCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 2343322111 347899999999999999999999998 33222348899999999999999854
No 29
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.14 E-value=5.8e-11 Score=109.47 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=90.2
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHH---HHHH
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFR---QFEQ 465 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~---~~~~ 465 (711)
.|||+|+|++++...+++.+..++ +..+.+++++|+++............... ....+......+ ....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la-~~~~~~i~~l~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 74 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELA-KRSGAEITLLHVIPPPPQYSFSAAEDEES-------EEEAEEEEQARQAEAEEAE 74 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHH-HHHTCEEEEEEEEESCHCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHH-HhhCCeEEEEEeecccccccccccccccc-------ccccchhhhhhhHHHHHHh
Confidence 489999999999999999999998 57889999999999765422211100000 000001110000 1111
Q ss_pred hcCCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CC--chhHHHHHHHHhhcCCcceEEE
Q 046591 466 QSSGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TN--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 466 ~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
. .+.......+.. ++..++|++.+++.++|+||||.|+ ++ +.++|++.+++++++||||+|+
T Consensus 75 ~-~~~~~~~~~~~~---~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 75 A-EGGIVIEVVIES---GDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp H-HTTSEEEEEEEE---SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred h-hccceeEEEEEe---eccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEe
Confidence 1 122333333333 6899999999999999999999999 43 5669999999999999999997
No 30
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.14 E-value=5.1e-10 Score=105.32 Aligned_cols=127 Identities=12% Similarity=0.133 Sum_probs=88.3
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcc------------hhhhhhHHHHHHHHHhccCCCCCe
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKD------------LIEEKNDLNLISGLRMSTMDSKNV 618 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~------------~~~~~~d~~~l~~~~~~~~~~~~v 618 (711)
+|+++++|++..+.|+++|.++++..+++++++|+.++...... +..++..++.++++..... ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 48999999999999999999999999999999999876322110 1112333445555543211 1123
Q ss_pred EEEEEeec--C-chhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccc-hhhhHhhcCCCCCc--ccEEEEe
Q 046591 619 RYIKHSVK--E-GSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELG-VVGDILASSDFKSN--ASVMVMQ 692 (711)
Q Consensus 619 ~y~e~~v~--~-g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG-~igd~las~d~~~~--~svLvvq 692 (711)
.+....++ + .+++++++++. ++|||+||+|++ +|+..+ .+| ++.+.++.+ ++ ||||||+
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~--~~dlIV~Gs~g~------~~l~~~----~~gssva~~Vi~~---a~~~c~Vlvv~ 144 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADH--GITKLVMGASSD------NHFSMK----FKKSDVASSVLKE---APDFCTVYVVS 144 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHc--CCCEEEEeccCC------Cceeec----ccCCchhHHHHhc---CCCCceEEEEe
Confidence 33333333 2 23577777765 799999999986 355444 577 699999999 88 9999998
Q ss_pred e
Q 046591 693 Q 693 (711)
Q Consensus 693 q 693 (711)
.
T Consensus 145 ~ 145 (146)
T cd01989 145 K 145 (146)
T ss_pred C
Confidence 5
No 31
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.11 E-value=1.2e-08 Score=109.75 Aligned_cols=266 Identities=12% Similarity=0.159 Sum_probs=161.3
Q ss_pred HHHHHHHHHH-HHHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHH
Q 046591 30 VISVFESFGL-IYITFVTSVRADLSIMT---KSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVT 102 (711)
Q Consensus 30 ~l~~la~~Gl-~~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~ 102 (711)
.+...-+=|+ .+|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ +..+....+....| |
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI----Y~~~n~~~~~~~GW-------g 135 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI----YFFLNADTPSQHGF-------G 135 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH----HhheecCCCccCcc-------c
Confidence 3444444454 58889999999877764 333443 45577778888764 22332211111112 1
Q ss_pred HHhhh-ccHHHHHHHHHhhcc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHH
Q 046591 103 GLEST-ISFYGILEILTDMKL-LNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIV 179 (711)
Q Consensus 103 ~~~s~-Ts~~vv~~iL~el~l-~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 179 (711)
+-++. ++|.+ -++.=+|- ..+.+....++-|++||+.+++++++++. ++ ..+ +...+..++.+
T Consensus 136 IPmATDIAFAl--gvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~-----i~~~~L~~a~~~~~~--- 201 (438)
T PRK14856 136 IPMATDIAFAL--GVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TN-----LKFAWLLGALGVVLV--- 201 (438)
T ss_pred cccHHHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CC-----CcHHHHHHHHHHHHH---
Confidence 21111 22222 22222221 34567778899999999999988887763 11 233 43333322221
Q ss_pred HHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCc-----------------
Q 046591 180 FIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPM----------------- 242 (711)
Q Consensus 180 ~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~----------------- 242 (711)
.++.+|.. ++....++++.+++ =+....-|+|+.++..++|+++|-.++.
T Consensus 202 -------l~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~ 268 (438)
T PRK14856 202 -------LAVLNRLN----VRSLIPYLLLGVLL--WFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAET 268 (438)
T ss_pred -------HHHHHHcC----CccccHHHHHHHHH--HHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcc
Confidence 12234432 22334444444333 2233578999999999999999975322
Q ss_pred ---------------------------hhHHHHHHHHHHHHhhHHHH-HHHhcccceec-ccCchhhHHHHHHHHHHHHh
Q 046591 243 ---------------------------GSLLTDKMEAFVWSVFLPCF-LINSGKGVNLF-STTLTGFLIVEFLIWVATTV 293 (711)
Q Consensus 243 ---------------------------~~~l~~~l~~~~~~~~~PlF-F~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~ 293 (711)
.+++++.+++.+..+.+|+| |...|..++.. .... -.....+++..++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~--~pv~lGI~~GLvvG 346 (438)
T PRK14856 269 SSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEV--DKVLLGVILGLCLG 346 (438)
T ss_pred ccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhcc--CcHHHHHHHHHHhc
Confidence 13466777888888999999 67889888755 3211 12345666777889
Q ss_pred HHHHHHHHHhhc----------CCChhHHHHHHHHhhcchhHHHHHhhhccc
Q 046591 294 KLFAIIIPSLYY----------KMPFMDALSLGLLLNCRGIYDIQIFSRSNR 335 (711)
Q Consensus 294 K~~~~~l~~~~~----------~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~ 335 (711)
|.+|.+..++.. |++|++-.-.|++-+.-=.+++.+++.+.+
T Consensus 347 K~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 347 KPLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred chHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998886553 578999888888655666788888888884
No 32
>PRK15005 universal stress protein F; Provisional
Probab=99.08 E-value=1.5e-09 Score=101.90 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=83.8
Q ss_pred ceeEEEeccCCcc--hHHHHHHHHHHhcCCCeEEEEEEeeecCCC---------Ccc---hhhhhhHHHHHHHHHhccCC
Q 046591 549 AINVCVIFLGGPD--DREALAYGARMTGDQNAMLTIIRFFAVNHA---------TKD---LIEEKNDLNLISGLRMSTMD 614 (711)
Q Consensus 549 ~~~I~v~f~gg~d--dreAl~~a~rma~~~~~~ltvl~v~~~~~~---------~~~---~~~~~~d~~~l~~~~~~~~~ 614 (711)
.+||+++++|+++ .+.|+++|.++|+..+++++++|++++... .+. +..++..++.++++.....
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 80 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK- 80 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC-
Confidence 3689999999998 479999999999999999999999975211 000 1111222233444433321
Q ss_pred CCCeEEEEEeecCc---hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEE
Q 046591 615 SKNVRYIKHSVKEG---SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVM 691 (711)
Q Consensus 615 ~~~v~y~e~~v~~g---~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvv 691 (711)
.....+ +..+..| +++.+.+++. ++|||+||+|+ .|+.+| -+|++.+.++.+ ++||||||
T Consensus 81 ~~~~~~-~~~v~~G~p~~~I~~~a~~~--~~DLIV~Gs~~-------~~~~~~----llGS~a~~vl~~---a~cpVlvV 143 (144)
T PRK15005 81 LPTDRV-HVHVEEGSPKDRILELAKKI--PADMIIIASHR-------PDITTY----LLGSNAAAVVRH---AECSVLVV 143 (144)
T ss_pred CCCCce-EEEEeCCCHHHHHHHHHHHc--CCCEEEEeCCC-------CCchhe----eecchHHHHHHh---CCCCEEEe
Confidence 111222 2223334 2455655554 89999999883 245454 699999999999 99999998
Q ss_pred e
Q 046591 692 Q 692 (711)
Q Consensus 692 q 692 (711)
+
T Consensus 144 r 144 (144)
T PRK15005 144 R 144 (144)
T ss_pred C
Confidence 5
No 33
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.06 E-value=2.8e-08 Score=105.37 Aligned_cols=268 Identities=12% Similarity=0.113 Sum_probs=161.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhhHHHHH
Q 046591 30 VISVFESFGLI-YITFVTSVRADLSIMT---KSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPL-DGELGESVQMV 101 (711)
Q Consensus 30 ~l~~la~~Gl~-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~-~~~~~~~~~~l 101 (711)
.+....+=|+| +|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ +..+....+. ...|
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlI----y~~~n~g~~~~~~GW------- 126 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALI----YAAFNYNNPETLRGW------- 126 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH----HheeecCCCcccCcc-------
Confidence 45555555655 7889999999877764 333443 45577778888764 2222221111 1112
Q ss_pred HHHhhhccHHHHHHHHHhhc-cccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHH
Q 046591 102 TGLESTISFYGILEILTDMK-LLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIV 179 (711)
Q Consensus 102 ~~~~s~Ts~~vv~~iL~el~-l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 179 (711)
|+-+ .|..+-..-++.=+| -....+....++-|++||+.+++++++++. + + ..+ +......++.+
T Consensus 127 gIPm-ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~-----~-i~~~~L~~a~~~~~~--- 193 (389)
T PRK09560 127 AIPA-ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---S-----D-LSLPALALAAIAIAV--- 193 (389)
T ss_pred cccc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---C-----C-CCHHHHHHHHHHHHH---
Confidence 1111 122222222222222 135566788899999999999988887662 1 1 223 33333222211
Q ss_pred HHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCc------hhHHHHHHHHH
Q 046591 180 FIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPM------GSLLTDKMEAF 253 (711)
Q Consensus 180 ~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~------~~~l~~~l~~~ 253 (711)
.++.+|.. ++....+..+.+++ =+....-|+|+.++..++|+++|..++. .+++++++++.
T Consensus 194 -------l~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~ 260 (389)
T PRK09560 194 -------LFLLNRLG----VTKLTPYLIVGAIL--WFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPW 260 (389)
T ss_pred -------HHHHHHcC----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhh
Confidence 12234432 23344555544333 2233578999999999999999985322 25688999999
Q ss_pred HHHhhHHHH-HHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhc----------CCChhHHHHHHHHhhc
Q 046591 254 VWSVFLPCF-LINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYY----------KMPFMDALSLGLLLNC 321 (711)
Q Consensus 254 ~~~~~~PlF-F~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~a~~lgl~l~~ 321 (711)
+..+.+|+| |...|..++-. +.+. .-.....+++..++||.+|.++.++.. |++|++-...|++-+.
T Consensus 261 v~~~IlPlFAlaNAGV~l~~~~~~~~-~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GI 339 (389)
T PRK09560 261 VAFAILPLFAFANAGVSLAGISLSSL-TSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGI 339 (389)
T ss_pred hhhhhHHHHHhhcCCeeecCCcHHhc-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 888889999 66788877432 2211 112345666777889999998886543 5689998888886666
Q ss_pred chhHHHHHhhhccc
Q 046591 322 RGIYDIQIFSRSNR 335 (711)
Q Consensus 322 kG~~~l~~~~~~~~ 335 (711)
-=.+++.+++.+..
T Consensus 340 GFTmSLFIa~LAF~ 353 (389)
T PRK09560 340 GFTMSLFIGSLAFG 353 (389)
T ss_pred HHHHHHHHHHhhcC
Confidence 66788888888883
No 34
>PRK09982 universal stress protein UspD; Provisional
Probab=99.05 E-value=9.2e-10 Score=103.29 Aligned_cols=123 Identities=12% Similarity=0.153 Sum_probs=84.8
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCC-------Cc-c---hhhhhhHHHHHHHHHhccCCCCC
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHA-------TK-D---LIEEKNDLNLISGLRMSTMDSKN 617 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~-------~~-~---~~~~~~d~~~l~~~~~~~~~~~~ 617 (711)
+++|+++.+|+++++.|+++|.++|+.+++++|++|++++... .. + +..++..++.+++...... ...
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 4689999999999999999999999999999999999875221 00 0 1111222334444443321 111
Q ss_pred eEEEEEeecCc---hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEee
Q 046591 618 VRYIKHSVKEG---SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQ 693 (711)
Q Consensus 618 v~y~e~~v~~g---~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq 693 (711)
+ +..+..| ++|.+++++. ++|||+||+| + +|+++| +| +.+-++.+ +++|||||.-
T Consensus 82 ~---~~~v~~G~p~~~I~~~A~~~--~aDLIVmG~~-~------~~~~~~-----~~-va~~V~~~---s~~pVLvv~~ 139 (142)
T PRK09982 82 T---KLRIERGEMPETLLEIMQKE--QCDLLVCGHH-H------SFINRL-----MP-AYRGMINK---MSADLLIVPF 139 (142)
T ss_pred c---eEEEEecCHHHHHHHHHHHc--CCCEEEEeCC-h------hHHHHH-----HH-HHHHHHhc---CCCCEEEecC
Confidence 2 2222333 4677777765 8999999976 3 356656 46 99999999 9999999963
No 35
>PRK11175 universal stress protein UspE; Provisional
Probab=99.03 E-value=5.7e-10 Score=118.65 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=91.3
Q ss_pred cceeEEEEeccCCh-------HHHHHHHHhcCCCCC-CcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHH
Q 046591 388 ELRILACIYEENNV-------ATIINVLGASIFPQR-PMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNA 459 (711)
Q Consensus 388 e~rILv~i~~~~~~-------~~~l~la~~~~~~~~-~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 459 (711)
..|||+|+|+++.. ..+++.+..++ +.. ..+++++|+.+.+........+.... ........++..+.
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la-~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 227 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLA-EQLNHAEVHLVNAYPVTPINIAIELPEFDP---SVYNDAIRGQHLLA 227 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHH-hhCcCCceEEEEEecCcchhccccccccch---hhHHHHHHHHHHHH
Confidence 36899999998764 46888888887 466 78999999987543210000000000 00000111223345
Q ss_pred HHHHHHhcCCceEE-EEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CC--chhHHHHHHHHhhcCCcceEEEeccC
Q 046591 460 FRQFEQQSSGSLSL-QCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TN--SYVIKKITKKVLKMAPCSVGILFDRR 535 (711)
Q Consensus 460 f~~~~~~~~~~v~v-~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~--~~~~gs~~~~Vl~~ApC~V~ilvdrg 535 (711)
++++.+.. +++. +..+. .++..+.|++.|+++++||||||+|+ ++ +.++||+.++|++++||||++++.++
T Consensus 228 l~~~~~~~--~~~~~~~~v~---~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 228 MKALRQKF--GIDEEQTHVE---EGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHHHHHHh--CCChhheeec---cCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCCC
Confidence 55555432 2332 22222 26789999999999999999999998 43 66799999999999999999986555
Q ss_pred C
Q 046591 536 E 536 (711)
Q Consensus 536 ~ 536 (711)
.
T Consensus 303 ~ 303 (305)
T PRK11175 303 Y 303 (305)
T ss_pred C
Confidence 3
No 36
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.01 E-value=4.9e-08 Score=103.28 Aligned_cols=265 Identities=16% Similarity=0.198 Sum_probs=160.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhhHHHHH
Q 046591 30 VISVFESFGLI-YITFVTSVRADLSIMT---KSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPL-DGELGESVQMV 101 (711)
Q Consensus 30 ~l~~la~~Gl~-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~-~~~~~~~~~~l 101 (711)
.+....+=|+| +|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ +..+....+. ...|
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAli----y~~~n~~~~~~~~GW------- 126 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALI----YLLFNYADPVTREGW------- 126 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHH----HhheecCCCcccCcc-------
Confidence 35555555655 7888999999887764 333443 45577778888764 2223221110 1112
Q ss_pred HHHhhhccHHHHHHHHHhhc-cccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHH
Q 046591 102 TGLESTISFYGILEILTDMK-LLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIV 179 (711)
Q Consensus 102 ~~~~s~Ts~~vv~~iL~el~-l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 179 (711)
|+-+ .|..+-..-++.=+| -....+....++-|++||+.+++++++++. ++ ..+ +......++ .+
T Consensus 127 aIP~-ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~-----i~~~~L~~a~~~~--~~- 193 (388)
T PRK09561 127 AIPA-ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----SD-----LSMVSLGVAAVAI--AV- 193 (388)
T ss_pred cccc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CC-----ccHHHHHHHHHHH--HH-
Confidence 1111 112111112222222 135566778899999999999988887663 11 223 332222211 11
Q ss_pred HHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCc----hhHHHHHHHHHHH
Q 046591 180 FIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPM----GSLLTDKMEAFVW 255 (711)
Q Consensus 180 ~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~----~~~l~~~l~~~~~ 255 (711)
.++.+|.. ++....+.++.+++ =+....-|+|+.++..+.|+.+|...+. .+++++++++.+.
T Consensus 194 -------l~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~ 260 (388)
T PRK09561 194 -------LAVLNLCG----VRRTSVYILVGVVL--WVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVA 260 (388)
T ss_pred -------HHHHHHcC----CccchHHHHHHHHH--HHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhh
Confidence 12234432 23344555544333 2233578999999999999999974322 3578899999988
Q ss_pred HhhHHHH-HHHhcccc-ee--c-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhc----------CCChhHHHHHHHHhh
Q 046591 256 SVFLPCF-LINSGKGV-NL--F-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYY----------KMPFMDALSLGLLLN 320 (711)
Q Consensus 256 ~~~~PlF-F~~~G~~~-d~--~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~a~~lgl~l~ 320 (711)
.+.+|+| |...|..+ +. . +.++ ....+++..++||.+|.+..++.. |++|++-...|++-+
T Consensus 261 ~~IlPlFAfaNAGV~l~~~~~~~~~~p----v~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~G 336 (388)
T PRK09561 261 FLILPLFAFANAGVSLQGVTLDGLTSP----LPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCG 336 (388)
T ss_pred heeHHHHHhhcCCeeeccCcHHhhcCc----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 8899999 66788777 32 2 3332 345566777789999988886543 467999888888655
Q ss_pred cchhHHHHHhhhccc
Q 046591 321 CRGIYDIQIFSRSNR 335 (711)
Q Consensus 321 ~kG~~~l~~~~~~~~ 335 (711)
.-=.+++.+.+.+.+
T Consensus 337 IGFTmSLFIa~LAF~ 351 (388)
T PRK09561 337 IGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHHHHHHHHhcC
Confidence 556788888888884
No 37
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.01 E-value=6.7e-08 Score=103.56 Aligned_cols=264 Identities=14% Similarity=0.152 Sum_probs=159.6
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHH
Q 046591 30 VISVFESFGLI-YITFVTSVRADLSIMT---KSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVT 102 (711)
Q Consensus 30 ~l~~la~~Gl~-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~ 102 (711)
.+...-+=|+| +|.|.+|+|+.-+.+. ++.|++ ..-++.|+++|.++ +..+....+....| |
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI----y~~~n~~~~~~~GW-------g 130 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL----YTALNAGGPGASGW-------G 130 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH----HheeecCCCccCcc-------c
Confidence 45555555655 7889999999877763 333443 45577777777764 22232211111112 1
Q ss_pred HHhhhccHHHHHHHHHhhcc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHHH
Q 046591 103 GLESTISFYGILEILTDMKL-LNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIVF 180 (711)
Q Consensus 103 ~~~s~Ts~~vv~~iL~el~l-~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 180 (711)
+-++ |..+....+|.=+|- ....+....++-|++||+.+++++++++. + + ..+ +...+.+++.
T Consensus 131 IPmA-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~----~-i~~~~L~~a~~~~~----- 195 (423)
T PRK14855 131 VPMA-TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----S----G-LNLLALLLAALTWA----- 195 (423)
T ss_pred cccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----C----C-CCHHHHHHHHHHHH-----
Confidence 2111 222222222222222 34557778899999999999988887662 1 1 233 3333222211
Q ss_pred HHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCC-c-----------------
Q 046591 181 IIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPP-M----------------- 242 (711)
Q Consensus 181 v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~-~----------------- 242 (711)
..++.+|.. ++....++.+.+++ =+....-|+|+.++..+.|+++|..++ .
T Consensus 196 -----~l~~ln~~~----v~~~~~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~ 264 (423)
T PRK14855 196 -----LALLAGRLG----VTSLKIYAVLGALL--WFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPE 264 (423)
T ss_pred -----HHHHHHHcC----CccccHHHHHHHHH--HHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccch
Confidence 112234421 23344454444333 223357899999999999999997511 1
Q ss_pred -------------------hhHHHHHHHHHHHHhhHHHH-HHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHH
Q 046591 243 -------------------GSLLTDKMEAFVWSVFLPCF-LINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIP 301 (711)
Q Consensus 243 -------------------~~~l~~~l~~~~~~~~~PlF-F~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 301 (711)
.+++++++++.+..+.+|+| |+..|..++-. +. .....+++..++||.+|.++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~-----pv~lGI~~GLvvGK~lGI~~~ 339 (423)
T PRK14855 265 VVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLG-----TVSLGVFLGLLLGKPLGVVGG 339 (423)
T ss_pred hhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCC-----cHHHHHHHHHHhcchHHHHHH
Confidence 23577888888888899999 66778777433 32 134556677778999999888
Q ss_pred Hhhc----------CCChhHHHHHHHHhhcchhHHHHHhhhccc
Q 046591 302 SLYY----------KMPFMDALSLGLLLNCRGIYDIQIFSRSNR 335 (711)
Q Consensus 302 ~~~~----------~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~ 335 (711)
++.. +++|++-.-.|++-+.-=.+++.+++.+.+
T Consensus 340 s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 340 AWLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6653 578999988888666666788888888884
No 38
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.01 E-value=2.5e-09 Score=98.51 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=87.1
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcch--hhhh----hHHHHHH-----HHHhccCCCCC
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDL--IEEK----NDLNLIS-----GLRMSTMDSKN 617 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~--~~~~----~d~~~l~-----~~~~~~~~~~~ 617 (711)
.+||++++++++++++|+++|.++|+.++++++++|+.++....... .... ..+.... +..... ...
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 79 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAE--GGI 79 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTS
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhh--ccc
Confidence 36999999999999999999999999999999999999875432110 0000 0000000 001111 223
Q ss_pred eEEEEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 618 VRYIKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 618 v~y~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
..+.....++. .++.+++++. ++||+++|+++. +++.+| -+|.+.+.++.+ ++||||||+
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~~~--~~dliv~G~~~~------~~~~~~----~~gs~~~~l~~~---~~~pVlvv~ 140 (140)
T PF00582_consen 80 VIEVVIESGDVADAIIEFAEEH--NADLIVMGSRGR------SGLERL----LFGSVAEKLLRH---APCPVLVVP 140 (140)
T ss_dssp EEEEEEEESSHHHHHHHHHHHT--TCSEEEEESSST------TSTTTS----SSHHHHHHHHHH---TSSEEEEEE
T ss_pred eeEEEEEeeccchhhhhccccc--cceeEEEeccCC------CCccCC----CcCCHHHHHHHc---CCCCEEEeC
Confidence 33444444454 4677777765 899999999984 233333 699999999999 999999985
No 39
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.00 E-value=2.8e-09 Score=98.07 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=84.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCc---chhhhhhHHHHHHHHHhccCCCC-CeEEEEEeec
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATK---DLIEEKNDLNLISGLRMSTMDSK-NVRYIKHSVK 626 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~---~~~~~~~d~~~l~~~~~~~~~~~-~v~y~e~~v~ 626 (711)
||+++.+|+++++.++++|.++|+..+++++++|+.++..... .+..++..++.+++........+ .+.+....-+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRIDH 80 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEecC
Confidence 5899999999999999999999999999999999998633211 11112223333333332211111 1222111111
Q ss_pred C-chhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 627 E-GSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 627 ~-g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
+ .+++.+.+++. ++||+++|.+++. ++.+ .-+|+..+.+... ++||||||+
T Consensus 81 ~~~~~I~~~a~~~--~~dlIV~G~~~~~------~~~~----~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 81 DIASGILRTAKER--QADLIIMGWHGST------SLRD----RLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred CHHHHHHHHHHhc--CCCEEEEecCCCC------Cccc----eecCchHHHHHhc---CCCCEEEeC
Confidence 2 24577777654 8999999999862 2222 3799999999999 999999985
No 40
>PRK15456 universal stress protein UspG; Provisional
Probab=98.98 E-value=4.5e-09 Score=98.51 Aligned_cols=125 Identities=10% Similarity=0.121 Sum_probs=82.9
Q ss_pred ceeEEEeccCCc--chHHHHHHHHHHhcCCCeEEEEEEeeecCCC------Cc--c---hhhhhhHHHHHHHHHhccCCC
Q 046591 549 AINVCVIFLGGP--DDREALAYGARMTGDQNAMLTIIRFFAVNHA------TK--D---LIEEKNDLNLISGLRMSTMDS 615 (711)
Q Consensus 549 ~~~I~v~f~gg~--ddreAl~~a~rma~~~~~~ltvl~v~~~~~~------~~--~---~~~~~~d~~~l~~~~~~~~~~ 615 (711)
++||++|++|++ .++.|+++|.++|+.. .+++++|+.++... .. + +..++..++.++++..... .
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 79 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFT-I 79 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhC-C
Confidence 368999999984 7999999999999874 69999999875321 01 0 1112233334444443321 1
Q ss_pred CCeEEEEEeecCc---hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 616 KNVRYIKHSVKEG---SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 616 ~~v~y~e~~v~~g---~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
+...+ +..+..| ++|.+.+++. +.||||||+|++ |+.+| -+|++++.++.+ ++||||||+
T Consensus 80 ~~~~v-~~~v~~G~~~~~I~~~a~~~--~~DLIVmG~~g~-------~~~~~----llGS~a~~v~~~---a~~pVLvV~ 142 (142)
T PRK15456 80 DPSRI-KQHVRFGSVRDEVNELAEEL--GADVVVIGSRNP-------SISTH----LLGSNASSVIRH---ANLPVLVVR 142 (142)
T ss_pred CCcce-EEEEcCCChHHHHHHHHhhc--CCCEEEEcCCCC-------Cccce----ecCccHHHHHHc---CCCCEEEeC
Confidence 12222 2333344 3566666654 899999999974 22233 599999999999 999999985
No 41
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.98 E-value=1.4e-07 Score=99.62 Aligned_cols=266 Identities=11% Similarity=0.132 Sum_probs=159.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHH
Q 046591 30 VISVFESFGLI-YITFVTSVRADLSIMT---KSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVT 102 (711)
Q Consensus 30 ~l~~la~~Gl~-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~ 102 (711)
.+....+=|++ +|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++=. .+.........| |
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~----~~n~~~~~~~GW-------~ 123 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYL----SINHDIKVINGW-------A 123 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHH----hhccCCcccCcc-------c
Confidence 45555555655 7888999999877653 333443 4557778888876422 232211101112 1
Q ss_pred HHhh-hccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHHH
Q 046591 103 GLES-TISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIVF 180 (711)
Q Consensus 103 ~~~s-~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 180 (711)
+-++ -++|.+-.-.+--.+ ....+.-..++-|++||+.+++++++++. + + ..+ +......++ .+.+
T Consensus 124 IP~ATDIAFAlgvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~----~-i~~~~L~~A~~~~--~~l~ 191 (383)
T PRK14854 124 IPSATDIAFTLGILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT----K----S-LSLLSLSLGTLFI--LAMI 191 (383)
T ss_pred cccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC----C----C-ccHHHHHHHHHHH--HHHH
Confidence 1111 123333222221222 35566677888899999999988887652 1 1 222 222221111 1111
Q ss_pred HHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCc----hhHHHHHHHHHHHH
Q 046591 181 IIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPM----GSLLTDKMEAFVWS 256 (711)
Q Consensus 181 v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~----~~~l~~~l~~~~~~ 256 (711)
+.+|.. .++....+.++.+++ =+....-|+|+.++..+.|+++|...+. .+++++++++.+..
T Consensus 192 --------~~nr~~---~v~~~~~Y~~~G~~l--W~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~ 258 (383)
T PRK14854 192 --------ICNRIF---KINRSSVYVVLGFFA--WFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIY 258 (383)
T ss_pred --------HHHHhc---CCceehHHHHHHHHH--HHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHH
Confidence 122210 122334444444332 2234578999999999999999984221 24688899999999
Q ss_pred hhHHHH-HHHhcccce-e--c-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhc----------CCChhHHHHHHHHhhc
Q 046591 257 VFLPCF-LINSGKGVN-L--F-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYY----------KMPFMDALSLGLLLNC 321 (711)
Q Consensus 257 ~~~PlF-F~~~G~~~d-~--~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~a~~lgl~l~~ 321 (711)
+.+|+| |+..|..++ . . +.++ ....+++..++||.+|.+..++.. +++|++-...|++-+.
T Consensus 259 ~IlPlFA~aNAGV~l~~~~~~~~~~p----v~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GI 334 (383)
T PRK14854 259 FILPVFAFANAGISFSGISFSILFEP----ITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGI 334 (383)
T ss_pred hhHHHHHhhcCCeeeccCcHHhhcCc----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999 667888773 2 2 3332 345566777789999988886543 4679999988886666
Q ss_pred chhHHHHHhhhccc
Q 046591 322 RGIYDIQIFSRSNR 335 (711)
Q Consensus 322 kG~~~l~~~~~~~~ 335 (711)
-=.+++.+++.+.+
T Consensus 335 GFTmSLFIa~LAF~ 348 (383)
T PRK14854 335 GFTMSLFIGVLAFN 348 (383)
T ss_pred HHHHHHHHHHhhCC
Confidence 66788888888884
No 42
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.95 E-value=2.7e-09 Score=97.46 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=84.4
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEeecC-ch
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHSVKE-GS 629 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~-g~ 629 (711)
||+++++|++.+++|+++|.++|+..+++++++++.+++....++..++..+++.+..+.. + +.+....-++ .+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~----~-~~~~~~~~~~~~~ 75 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEEL----G-AEVVTLPGDDVAE 75 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHc----C-CEEEEEeCCcHHH
Confidence 5899999999999999999999999999999999998754322222223333333333321 1 1221111122 23
Q ss_pred hHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCC-cccEEEE
Q 046591 630 ETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKS-NASVMVM 691 (711)
Q Consensus 630 ~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~-~~svLvv 691 (711)
++.+++++. ++|++++|+|++ +++.++ -+|+..+.++.. + +++|||+
T Consensus 76 ~I~~~~~~~--~~dllviG~~~~------~~~~~~----~~Gs~~~~v~~~---a~~~~v~v~ 123 (124)
T cd01987 76 AIVEFAREH--NVTQIVVGKSRR------SRWREL----FRGSLVDRLLRR---AGNIDVHIV 123 (124)
T ss_pred HHHHHHHHc--CCCEEEeCCCCC------chHHHH----hcccHHHHHHHh---CCCCeEEEe
Confidence 577777765 899999999985 233333 799999999999 7 9999997
No 43
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.93 E-value=6.5e-09 Score=97.63 Aligned_cols=123 Identities=12% Similarity=0.174 Sum_probs=82.5
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCC------c--chhh---hhhHHHHHHHHHhccCCCCC
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHAT------K--DLIE---EKNDLNLISGLRMSTMDSKN 617 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~------~--~~~~---~~~d~~~l~~~~~~~~~~~~ 617 (711)
++||+++.+|+++++.|+++|..+|+.++++++++++..+.... . ++.. ++..++.++++.... +
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~- 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA---G- 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC---C-
Confidence 57999999999999999999999999999999999995331110 0 0111 111112233333221 1
Q ss_pred eEEEEEee--cCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEee
Q 046591 618 VRYIKHSV--KEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQ 693 (711)
Q Consensus 618 v~y~e~~v--~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq 693 (711)
+...+..+ ++. ++|.+.+++. ++||||+|+|++ + |. .+|++++.++.+ ++||||||+.
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~~~--~~DLIV~Gs~~~-------~---~~---~lgSva~~v~~~---a~~pVLvv~~ 139 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIKKY--DMDLVVCGHHQD-------F---WS---KLMSSARQLINT---VHVDMLIVPL 139 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHHHh--CCCEEEEeCccc-------H---HH---HHHHHHHHHHhh---CCCCEEEecC
Confidence 11122333 332 4677777765 899999999952 1 11 278999999999 9999999985
No 44
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.91 E-value=7.5e-09 Score=94.15 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=92.3
Q ss_pred eeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhc-C
Q 046591 390 RILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQS-S 468 (711)
Q Consensus 390 rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~-~ 468 (711)
|||+|+++++....+++.+..++ +..+.+++++|+.+-.+..... .. ....++..+.++++.... .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a-~~~~~~i~~l~v~~~~~~~~~~---~~---------~~~~~~~~~~l~~~~~~~~~ 67 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLA-RRLGAELVLLHVVDPPPSSAAE---LA---------ELLEEEARALLEALREALAE 67 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEecCCCCcchh---HH---------HHHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999 5778999999998754332110 00 011122334444444321 2
Q ss_pred CceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCC---chhHHHHHHHHhhcCCcceEEE
Q 046591 469 GSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN---SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 469 ~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~---~~~~gs~~~~Vl~~ApC~V~il 531 (711)
.+++++..... ++..++|++.+++.++|++|||+++.+ +..+|++.+++++++||||+++
T Consensus 68 ~~~~~~~~~~~---~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 68 AGVKVETVVLE---GDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred CCCceEEEEec---CCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 45666665544 344899999999999999999999843 4568999999999999999873
No 45
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.85 E-value=3.6e-08 Score=104.26 Aligned_cols=268 Identities=16% Similarity=0.196 Sum_probs=150.3
Q ss_pred HHHHHHHHHH-HHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHH
Q 046591 31 ISVFESFGLI-YITFVTSVRADLSIMT---KSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTG 103 (711)
Q Consensus 31 l~~la~~Gl~-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ 103 (711)
+...-+=|+| +|.|.+|+|+.-+.+. ++.||+ ..-++.|+++|.++ +..+....+ ... --+|+
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI----yl~~n~~~~-----~~~-~GW~I 124 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI----YLAFNAGGP-----EAA-HGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH----HGGG--SST-----THH-HHTSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH----HheeecCCC-----CcC-ceEEe
Confidence 4444455554 7889999999877663 334443 44567777777653 222222111 011 22222
Q ss_pred HhhhccHHHHHHHHHhhcc-ccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHHHH
Q 046591 104 LESTISFYGILEILTDMKL-LNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIVFI 181 (711)
Q Consensus 104 ~~s~Ts~~vv~~iL~el~l-~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~v 181 (711)
-+ .|+.+....++.=++- ....+....++-|++||+.++++++++++- + ..+ +.......+ ..
T Consensus 125 P~-ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~---~------i~~~~L~~a~~~~--~~--- 189 (378)
T PF06965_consen 125 PM-ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTD---G------ISLLWLLLAAAAL--LL--- 189 (378)
T ss_dssp SS----HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------------HHHHHHHHHHH--HH---
T ss_pred cc-cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCC---C------CCHHHHHHHHHHH--HH---
Confidence 22 2232333333333332 245566889999999999999998887631 1 222 332222211 11
Q ss_pred HHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHH-HHHhhchhhHHHHHHHhhcCCCCCch--------hHHHHHHHH
Q 046591 182 IRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFV-SESMGLIGFWGPIILGVITPLIPPMG--------SLLTDKMEA 252 (711)
Q Consensus 182 ~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~-~~~~g~~~~lGaf~~Gl~l~~~~~~~--------~~l~~~l~~ 252 (711)
.|..+|.. ++....+..+.++ .|+ ...-|+|+.++..+.|+++|..++.+ +++++++++
T Consensus 190 -----l~~l~r~~----v~~~~~Y~~~G~~---lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p 257 (378)
T PF06965_consen 190 -----LFVLNRLG----VRSLWPYLLLGIL---LWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHP 257 (378)
T ss_dssp -----HHHHHHTT-------THHHHHHHHH---HHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHH
T ss_pred -----HHHHHHCC----CceehHHHHHHHH---HHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhh
Confidence 12234432 2233444444332 233 35789999999999999999976542 378889999
Q ss_pred HHHHhhHHHH-HHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhc----------CCChhHHHHHHHHhh
Q 046591 253 FVWSVFLPCF-LINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYY----------KMPFMDALSLGLLLN 320 (711)
Q Consensus 253 ~~~~~~~PlF-F~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~a~~lgl~l~ 320 (711)
.++.+.+|+| |+..|..++-. +... .-.....+++..++||.+|.+..++.. |++|++-...|++-+
T Consensus 258 ~v~~~IlPlFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaG 336 (378)
T PF06965_consen 258 WVAFVILPLFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAG 336 (378)
T ss_dssp HHHHTHHHHHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT
T ss_pred hhhhhhHHhHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 9888999999 77888888765 5432 122234556667789999998876543 467888888888655
Q ss_pred cchhHHHHHhhhcccc
Q 046591 321 CRGIYDIQIFSRSNRR 336 (711)
Q Consensus 321 ~kG~~~l~~~~~~~~~ 336 (711)
.-=.+++.+++.+.+.
T Consensus 337 IGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 337 IGFTMSLFIAGLAFDD 352 (378)
T ss_dssp --HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHcCC
Confidence 6667888888888876
No 46
>PRK10116 universal stress protein UspC; Provisional
Probab=98.84 E-value=1.6e-08 Score=94.55 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=83.3
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCC----Ccc------hhhhhhHHHHHHHHHhccCCCCCe
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHA----TKD------LIEEKNDLNLISGLRMSTMDSKNV 618 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~----~~~------~~~~~~d~~~l~~~~~~~~~~~~v 618 (711)
++||+++.+++++...|+++|.++|+.+++++|++++.++... ... +..++..++++++...+. + +
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA---D-Y 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---C-C
Confidence 5799999999999999999999999999999999999854211 000 111122234455544332 1 1
Q ss_pred EEEEEeecCc---hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 619 RYIKHSVKEG---SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 619 ~y~e~~v~~g---~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
......+..| +++.+.+++. ++||+|+|+|++ ++++.| +++++.++.. ++|+||||.
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~--~~DLiV~g~~~~------~~~~~~------~s~a~~v~~~---~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKH--HFDLVICGNHNH------SFFSRA------SCSAKRVIAS---SEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHh--CCCEEEEcCCcc------hHHHHH------HHHHHHHHhc---CCCCEEEEe
Confidence 1122333344 3556666654 899999999985 234333 4678999999 999999996
No 47
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.61 E-value=3.5e-07 Score=86.05 Aligned_cols=139 Identities=14% Similarity=0.200 Sum_probs=91.4
Q ss_pred cceeEEEEe-ccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCC--CCCCCCchHHHHHHHHHHH
Q 046591 388 ELRILACIY-EENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMP--SSSKPTKIDFILNAFRQFE 464 (711)
Q Consensus 388 e~rILv~i~-~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~f~~~~ 464 (711)
..+|++++| .++....+.+.+...+ +.....++++|+++-................. ........++..+..++..
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALA-KRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHH-HhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 368999999 9999999999998888 56777888888887654322211100000000 0000122344444444444
Q ss_pred HhcCCceE-EEEEEEEccCCCh-hHHHHHhhhhcCccEEEecccc-CC--chhHHHHHHHHhhcCCcceEEEe
Q 046591 465 QQSSGSLS-LQCFTATAPYDSM-HEDICSMTFEKCTSLVIIPFQK-TN--SYVIKKITKKVLKMAPCSVGILF 532 (711)
Q Consensus 465 ~~~~~~v~-v~~~~~vs~~~~~-~~~I~~~A~e~~~dlIimg~h~-~~--~~~~gs~~~~Vl~~ApC~V~ilv 532 (711)
+. .++. ++..... ++. .+.|++.|.+.++|+||||.++ ++ +.++||+.++|++++||||+++.
T Consensus 84 ~~--~~~~~~~~~~~~---g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 84 EA--AGVPVVETEVVE---GSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HH--cCCCeeEEEEec---CCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEc
Confidence 33 2233 2333322 456 6999999999999999999988 33 44699999999999999999974
No 48
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.60 E-value=5.6e-07 Score=81.67 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=83.9
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCc---chhhhhhHHHHHHHHHhccCC-CCCeEEEEEeec
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATK---DLIEEKNDLNLISGLRMSTMD-SKNVRYIKHSVK 626 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~---~~~~~~~d~~~l~~~~~~~~~-~~~v~y~e~~v~ 626 (711)
||++++++++..+.++++|.++|+..++++|++++.++..... ++...+..++.++++...... .-.+.+.-..-.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGD 80 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 5899999999999999999999999999999999987644321 111223333455555543111 112222111111
Q ss_pred CchhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEE
Q 046591 627 EGSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVM 691 (711)
Q Consensus 627 ~g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvv 691 (711)
...++.+.+++. ++|++++|+++.. ++.+ --.|.+.+.+... ++++||+|
T Consensus 81 ~~~~i~~~~~~~--~~dlvvig~~~~~------~~~~----~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 81 PAEAILEAAEEL--GADLIVMGSRGRS------GLRR----LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred CHHHHHHHHHHc--CCCEEEEcCCCCC------ccce----eeeccHHHHHHhC---CCCCEEeC
Confidence 124566777764 8999999998752 1222 2689999999998 88999985
No 49
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1.2e-05 Score=82.03 Aligned_cols=265 Identities=14% Similarity=0.163 Sum_probs=156.9
Q ss_pred HHHHHHHHHH-HHHHHHhhccChhHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCCC-CchhhHHHHHH
Q 046591 31 ISVFESFGLI-YITFVTSVRADLSIMT---KSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPLD-GELGESVQMVT 102 (711)
Q Consensus 31 l~~la~~Gl~-~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~~-~~~~~~~~~l~ 102 (711)
+...-+=|++ ++.+++|+|+.-+.+. ++++++ ..-++.|++.|..+ +.++....+.. ..|.
T Consensus 62 l~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~~GWa------- 130 (390)
T COG3004 62 LLLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATLEGWA------- 130 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhhcCcC-------
Confidence 4444555665 6677899999888774 334433 33456666666543 22232222111 1121
Q ss_pred HHhhhccHHHHHHHHHhhc-cccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHHH
Q 046591 103 GLESTISFYGILEILTDMK-LLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIVF 180 (711)
Q Consensus 103 ~~~s~Ts~~vv~~iL~el~-l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 180 (711)
+-+.|..+....++.=++ ...+.+--..++-+++||+-++++++++.. .+ .++ +...+.+ .+....
T Consensus 131 -IP~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~------Ls~~al~~a~~--~i~vL~ 198 (390)
T COG3004 131 -IPMATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TD------LSMAALGIAAL--AIAVLA 198 (390)
T ss_pred -cccHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CC------ccHHHHHHHHH--HHHHHH
Confidence 011222222222332222 135666677889999999999988887653 11 222 2222211 111111
Q ss_pred HHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCc----hhHHHHHHHHHHHH
Q 046591 181 IIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPM----GSLLTDKMEAFVWS 256 (711)
Q Consensus 181 v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~----~~~l~~~l~~~~~~ 256 (711)
..+|..- .....+++...++-.+. ..-|+|..+...+.|+.+|-.... -+++++.+.+.+..
T Consensus 199 --------~lN~~~v----~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf 264 (390)
T COG3004 199 --------VLNRLGV----RRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAF 264 (390)
T ss_pred --------HHHHhCc----hhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHH
Confidence 1222211 11233444444443332 467999999999999999975332 35778888888888
Q ss_pred hhHHHH-HHHhcccce---ec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhc----------CCChhHHHHHHHHhhc
Q 046591 257 VFLPCF-LINSGKGVN---LF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYY----------KMPFMDALSLGLLLNC 321 (711)
Q Consensus 257 ~~~PlF-F~~~G~~~d---~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~a~~lgl~l~~ 321 (711)
+.+|+| |...|..++ .. +.++ ..+.+++..++||.+|.+..++.. |.+|++-...+++-+.
T Consensus 265 ~IlPlFaFaNAGvsl~g~~~~~l~s~----l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI 340 (390)
T COG3004 265 FILPLFAFANAGVSLQGVSLSGLTSP----LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI 340 (390)
T ss_pred HHHHHHHHccCCcccccccccccccc----hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh
Confidence 999999 778888876 33 4432 346667778899999998887653 5678888888876555
Q ss_pred chhHHHHHhhhcccc
Q 046591 322 RGIYDIQIFSRSNRR 336 (711)
Q Consensus 322 kG~~~l~~~~~~~~~ 336 (711)
-=.+++.+...+.+.
T Consensus 341 GFTMSlFI~~LAf~~ 355 (390)
T COG3004 341 GFTMSLFIASLAFGS 355 (390)
T ss_pred hHHHHHHHHHHhcCC
Confidence 557778888877655
No 50
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.17 E-value=9.1e-07 Score=97.03 Aligned_cols=316 Identities=11% Similarity=0.151 Sum_probs=197.3
Q ss_pred HHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCchhhHHHHHHHHhhhccHHHHHHHHHh
Q 046591 42 ITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQF--DPLDGELGESVQMVTGLESTISFYGILEILTD 119 (711)
Q Consensus 42 ~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~--~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~e 119 (711)
++|-+|.-|.-+.+..+....+..|+.|.+.-.+.-.+..+.+... +....+.... ++.|...|...+..+..+.+|
T Consensus 109 IvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~-LlFgSLIsAVDPVAVLaVFEE 187 (670)
T KOG1966|consen 109 IVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDI-LLFGSLISAVDPVAVLAVFEE 187 (670)
T ss_pred HHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHH-HHHHHHHHhcCchhhhhhhhh
Confidence 5677888888888889988888889888887544322222222221 2111224455 888899999888888889999
Q ss_pred hccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 046591 120 MKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL----LNLMSFMLIVIFIVFIIRPVMVWMMRQTPE 195 (711)
Q Consensus 120 l~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~ 195 (711)
.+. |.-+=-++.+.+++||.+.+++.-++.++..-++........ .+++...+.+++++.+...+.....|.+.+
T Consensus 188 ihV-Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~ 266 (670)
T KOG1966|consen 188 IHV-NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH 266 (670)
T ss_pred hcc-ccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc
Confidence 986 555556778899999999999988777766543220000000 111111112233333444444455555543
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCC-----CchhHHHHHHHHHHHHhhHHHHHHHhcccc
Q 046591 196 GKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIP-----PMGSLLTDKMEAFVWSVFLPCFLINSGKGV 270 (711)
Q Consensus 196 ~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~-----~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~ 270 (711)
++-..-++++.+..+++..+|.++++++++-.+.|+++.+.- .....-....-...+..--++-|++.|..+
T Consensus 267 ---vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~ 343 (670)
T KOG1966|consen 267 ---VRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVST 343 (670)
T ss_pred ---eeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhh
Confidence 223344677888899999999999999999999999997641 111222333333345666777888888776
Q ss_pred eecccCchhhHHHHHHHHHHHHhHHHHHHHHHhhc------CCChhHHHHHHHHhhcchhHHHHHhhhccccC------C
Q 046591 271 NLFSTTLTGFLIVEFLIWVATTVKLFAIIIPSLYY------KMPFMDALSLGLLLNCRGIYDIQIFSRSNRRK------M 338 (711)
Q Consensus 271 d~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~------~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~------~ 338 (711)
--.-.+ ++|.++.+-++...+-|.+++...+++. +++..|-+.++.+ +-||.++..+... .+.. +
T Consensus 344 v~~~h~-wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~l-id~~~vp~K~~ 420 (670)
T KOG1966|consen 344 VSSNHH-WDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVL-IDGAKVPAKNM 420 (670)
T ss_pred cCCcce-eehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEE-eccccCCcccc
Confidence 433121 2456666666667777999888877765 4566776666553 6677766544322 2322 2
Q ss_pred CCchhhHHHHHHHHHHHHhHHHHHHHh
Q 046591 339 LSDESYGVMVMTAMLKSAIALPLLRVF 365 (711)
Q Consensus 339 i~~~~f~~lvl~~ll~t~i~~pl~~~~ 365 (711)
.-..+..++.+++.+..+..-|+++++
T Consensus 421 Fvttti~VIfFTVflQGiTIkplvk~L 447 (670)
T KOG1966|consen 421 FVTTTIAVIFFTVFLQGITIKPLVKFL 447 (670)
T ss_pred eEeeeeEEEeeeeeecccchHHHHHHH
Confidence 223344444555666666778999996
No 51
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.09 E-value=4.5e-05 Score=71.58 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=88.1
Q ss_pred ceeEEEecc-CCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCc-------c-------hhhhhhHHHHHHHHHhccC
Q 046591 549 AINVCVIFL-GGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATK-------D-------LIEEKNDLNLISGLRMSTM 613 (711)
Q Consensus 549 ~~~I~v~f~-gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~-------~-------~~~~~~d~~~l~~~~~~~~ 613 (711)
.++|+++++ |.+..++|++.+..+++..+..++++++.++..... . ...++..++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999 999999999999999999999999999886533210 0 1113333455555554322
Q ss_pred CCCCe-EEEEEeecCc--hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEE
Q 046591 614 DSKNV-RYIKHSVKEG--SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMV 690 (711)
Q Consensus 614 ~~~~v-~y~e~~v~~g--~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLv 690 (711)
..+.. .-.+....++ +++.+..++. ++||++||+++. +++. + --+|.+.+.++.. ++|||||
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~i~~~a~~~--~adliV~G~~g~------~~l~---~-~llGsvs~~v~~~---~~~pVlv 149 (154)
T COG0589 85 AAGVPVVETEVVEGSPSAEEILELAEEE--DADLIVVGSRGR------SGLS---R-LLLGSVAEKVLRH---APCPVLV 149 (154)
T ss_pred HcCCCeeEEEEecCCCcHHHHHHHHHHh--CCCEEEECCCCC------cccc---c-eeeehhHHHHHhc---CCCCEEE
Confidence 12211 1222333334 3455555554 799999999864 2222 2 4799999999999 9999999
Q ss_pred Eeee
Q 046591 691 MQQQ 694 (711)
Q Consensus 691 vqq~ 694 (711)
++..
T Consensus 150 v~~~ 153 (154)
T COG0589 150 VRSE 153 (154)
T ss_pred EccC
Confidence 9863
No 52
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=98.02 E-value=1.8e-05 Score=85.00 Aligned_cols=107 Identities=9% Similarity=0.072 Sum_probs=73.4
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCC--CCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHh
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQ--RPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQ 466 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~--~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 466 (711)
.|||+|+|.|+++..+++-|..++ ++ .+.+++++|+++....... .+ ......+++.+..++..+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA-~~~g~~AeL~lL~Vv~~~~~~~~----~~-------~~~~~~eelle~~~~~~~~ 73 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESA-EEAAETPTVHLVAAASGRAVDPE----GQ-------DELAAAEELLERVEVWATE 73 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHH-HhcCCCCEEEEEEEecCcccccc----hh-------HHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998 45 3689999999984321000 00 0011233444444443322
Q ss_pred ----cCCceEEEEEEEEc-----cCCChhHHHHHhhhhcCccEEEecccc
Q 046591 467 ----SSGSLSLQCFTATA-----PYDSMHEDICSMTFEKCTSLVIIPFQK 507 (711)
Q Consensus 467 ----~~~~v~v~~~~~vs-----~~~~~~~~I~~~A~e~~~dlIimg~h~ 507 (711)
...+++++..+... ..++.++.|++.|+++++|+||||-.=
T Consensus 74 ~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 74 DLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred hhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 12467877766542 126899999999999999999999543
No 53
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.94 E-value=7.5e-05 Score=80.22 Aligned_cols=122 Identities=10% Similarity=0.072 Sum_probs=76.5
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEeeecCCCCcc-hhhhhhHHHHHHHHHhccC-----CCCCeEE
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQ--NAMLTIIRFFAVNHATKD-LIEEKNDLNLISGLRMSTM-----DSKNVRY 620 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~--~~~ltvl~v~~~~~~~~~-~~~~~~d~~~l~~~~~~~~-----~~~~v~y 620 (711)
.+||++|++|++..+.|+++|..+|+.+ ++++|++||+++...... +...+..++.+++.+.... ....+.+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~v 84 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTI 84 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCce
Confidence 6799999999999999999999999985 699999999976432111 1111222233333332110 0123444
Q ss_pred EEEee---------cC-chhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCC
Q 046591 621 IKHSV---------KE-GSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDF 682 (711)
Q Consensus 621 ~e~~v---------~~-g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~ 682 (711)
....+ ++ .++|++++++. ++||||||..-...+ -.|-|-++.-.|++.+.
T Consensus 85 e~~vv~~~~~~~~~G~pae~Iv~~Aee~--~aDLIVm~~~~~~~~----------~~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 85 ETALLGTDEYLFGPGDYAEVLIAYAEEH--GIDRVVLDPEYNPGG----------TAPMLQPLERELARAGI 144 (357)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHc--CCCEEEECCCCCCCC----------CCcccchHHHHHHhcCC
Confidence 33333 23 24677888775 899999999753211 13346666666776654
No 54
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.89 E-value=0.0015 Score=67.78 Aligned_cols=255 Identities=13% Similarity=0.050 Sum_probs=138.8
Q ss_pred HHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhhhccHHHHHHHHH
Q 046591 39 LIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLESTISFYGILEILT 118 (711)
Q Consensus 39 l~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv~~iL~ 118 (711)
+..++|-.|-++|++...+.-||...+-+.=++++.+++.+++.+++...-.+ .+. +.+-++++.|.-..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~G---ls~-laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFG---LSG-LAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccc---hHH-HHHHHHHhcCcHHHHHHHHH
Confidence 34788999999999998888888888777888888888888887776421111 333 55555566665555555666
Q ss_pred hhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 046591 119 DMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINLLNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKR 198 (711)
Q Consensus 119 el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~ 198 (711)
|.+- ++|.|-. +...++|.=-+.++++.. .++. +.|
T Consensus 127 ~yG~-~~d~gA~--~~~sl~~GPf~tm~aLga------------------------------------~gLA-~ip---- 162 (312)
T PRK12460 127 EFGD-ERDVGAI--SILSLNDGPFFTMLALGA------------------------------------AGLA-NIP---- 162 (312)
T ss_pred HcCC-HhhhhHH--hhhhhccCcHHHHHHHHH------------------------------------HHHh-cCC----
Confidence 6663 3444422 112222221111111100 0111 111
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCc
Q 046591 199 LKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTL 277 (711)
Q Consensus 199 ~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~ 277 (711)
.. .. + +.+=|++.|+++.|..+ .+.+.+++= ..+.+|+|-+..|.++|++ +.+.
T Consensus 163 ~~-~l----v----------------~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~ 217 (312)
T PRK12460 163 IM-AL----V----------------AALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA 217 (312)
T ss_pred hH-HH----H----------------HHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh
Confidence 00 00 0 02235577777777432 344455543 4568999999999999998 5431
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHH--HHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHH
Q 046591 278 TGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLG--LLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKS 355 (711)
Q Consensus 278 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lg--l~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t 355 (711)
.+. .+++.++....-+..+++..+++|.+.+-+..+| ..-+.-|-..++...-.. +-.-+..-..+..++++|.
T Consensus 218 -G~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~--~~~~~~Ataqvaa~vivTa 293 (312)
T PRK12460 218 -GLA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSL--APVAAAATAQVAASVIVTA 293 (312)
T ss_pred -ChH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhH--HHHHHHHHHHHHHHHHHHH
Confidence 232 2333333334445556666688898888887777 544444444433332211 1122222223344555555
Q ss_pred HhHHHHHHHhhccch
Q 046591 356 AIALPLLRVFYDTSR 370 (711)
Q Consensus 356 ~i~~pl~~~~~~p~~ 370 (711)
+++|.+..|.+|+.+
T Consensus 294 il~P~~t~~~~k~~~ 308 (312)
T PRK12460 294 ILTPLLTSWVAKKEA 308 (312)
T ss_pred HHHHHHHHHHHHHhc
Confidence 566666777665533
No 55
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.30 E-value=0.027 Score=58.37 Aligned_cols=82 Identities=11% Similarity=0.017 Sum_probs=56.6
Q ss_pred HHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC--chhhHHHHHHHHhhhccHHHHHHH
Q 046591 39 LIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDG--ELGESVQMVTGLESTISFYGILEI 116 (711)
Q Consensus 39 l~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~--~~~~~~~~l~~~~s~Ts~~vv~~i 116 (711)
+..++|-.|-++|++...+.-||...+-+.-+++..+++.+++.+++...-.+. -..+. +.+-++++.+....=..+
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~-LAiiaa~~~~NggLY~aL 129 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSA-LAIIAAMTNSNGGLYLAL 129 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHH-HHHHHHHhcCCHHHHHHH
Confidence 457889999999999999999999888888888888888888888765311000 01233 455555555555555555
Q ss_pred HHhhc
Q 046591 117 LTDMK 121 (711)
Q Consensus 117 L~el~ 121 (711)
..|.+
T Consensus 130 ~~~yG 134 (314)
T PF03812_consen 130 MGQYG 134 (314)
T ss_pred HHHhC
Confidence 56665
No 56
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.04 E-value=0.5 Score=49.78 Aligned_cols=153 Identities=15% Similarity=0.168 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHhcch---hHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhh
Q 046591 30 VISVFESFGLIYITFVTSVRADLSIMTKSGR---LGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLES 106 (711)
Q Consensus 30 ~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~---~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s 106 (711)
.++..-.+.+.++||..|+.+..+++++..| ........++++--.++++++..+. .++.....+++++.+=+
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~----l~~~l~~Gl~ll~~~Pg 110 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP----LPPELAVGLLLLGCCPG 110 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC----CCHHHHHhHHheeeCCC
Confidence 3444457889999999999999999876554 4444444445444445566555553 11111111123333223
Q ss_pred hccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHHHHHHHH
Q 046591 107 TISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIVFIIRPV 185 (711)
Q Consensus 107 ~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~v~r~~ 185 (711)
.|+. .+...+. +.+. -++++.+.++.+++.++.-+...+..++..+.+.... +.++..++.=.+.+.+.|+.
T Consensus 111 gv~S-~~~t~lA-----kGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~ 183 (319)
T COG0385 111 GVAS-NAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPL 183 (319)
T ss_pred chhH-HHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 2222232 2333 4577778888888887765555544443221123344 55555555555666777877
Q ss_pred HHHHHhhc
Q 046591 186 MVWMMRQT 193 (711)
Q Consensus 186 ~~~~~~~~ 193 (711)
.....++.
T Consensus 184 ~~~~~~~~ 191 (319)
T COG0385 184 LPKWVERL 191 (319)
T ss_pred HHHHHHHH
Confidence 76555554
No 57
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=96.84 E-value=0.97 Score=49.40 Aligned_cols=281 Identities=10% Similarity=0.077 Sum_probs=136.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhh
Q 046591 27 TQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLES 106 (711)
Q Consensus 27 ~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s 106 (711)
+.+..+.+.+.-+-+-+++.=++.|++.++|.++|.+. ++..-.+..++|..+++++.+....+..|..+-.+.|.-..
T Consensus 49 ~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiG 127 (378)
T PF05684_consen 49 SSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIG 127 (378)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccC
Confidence 45677888888888888888899999999999988754 33333444555666666655433111123222011111110
Q ss_pred -hccHHHHHHHHHhhccccChhHHHHHHHHHH-HhHHHHHHHHHHHHHhhccccCcchhhH-HHHHHHHHHHHHHHHHHH
Q 046591 107 -TISFYGILEILTDMKLLNSELGRLALSSSLT-NTLLNMTLGTVLVVLSDIQEAGIGSINL-LNLMSFMLIVIFIVFIIR 183 (711)
Q Consensus 107 -~Ts~~vv~~iL~el~l~~s~~G~lals~a~i-~D~~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~v~r 183 (711)
...+.-+... ++. + .-.+++++. |.+..-+.+.++..+......-...... ..-...
T Consensus 128 Gs~N~~Av~~a---l~~---~--~~~~~a~~aaDnv~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~------------ 187 (378)
T PF05684_consen 128 GSVNFVAVAEA---LGV---S--DSLFAAALAADNVVMALWFAFLLALPPFARKFDRWTKADTSSIEA------------ 187 (378)
T ss_pred chhHHHHHHHH---HCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhccCCCccccch------------
Confidence 1112333332 222 1 223444444 4444444444444433210000000000 000000
Q ss_pred HHHHHHHhh--cCCCCcccchHHHHHHHHHHHHHHHHHHhhch-------------hhHHHHHHHhhcCCCCCchhHHHH
Q 046591 184 PVMVWMMRQ--TPEGKRLKNEHVIALNIMVVCSYFVSESMGLI-------------GFWGPIILGVITPLIPPMGSLLTD 248 (711)
Q Consensus 184 ~~~~~~~~~--~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~-------------~~lGaf~~Gl~l~~~~~~~~~l~~ 248 (711)
.-....+. .++.++.. ..+...+.+.+..+.+++.++-. .++-....|++... +|..+.+ .
T Consensus 188 -~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~ 263 (378)
T PF05684_consen 188 -LEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-R 263 (378)
T ss_pred -hhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-C
Confidence 00000000 00111111 22334444444444443332221 13334455555543 4455444 4
Q ss_pred HHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHH
Q 046591 249 KMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDI 327 (711)
Q Consensus 249 ~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l 327 (711)
.-+.+ ..+++=+||..+|++.|+. +.+. .+ .+++.++.+..-.+..++.++++|+|..+...-+ .=|.-|-...
T Consensus 264 g~~~l-g~~lly~ffa~IGa~a~i~~l~~a-p~--~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS-~AnIGGpaTA 338 (378)
T PF05684_consen 264 GASEL-GTFLLYLFFAVIGASADISELLDA-PS--LFLFGFIILAIHLLLMLILGKLFKIDLFELLVAS-NANIGGPATA 338 (378)
T ss_pred chHHH-HHHHHHHHHHHHccccCHHHHHHh-HH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh-hcccCCcchH
Confidence 44555 4667779999999999998 6542 22 2333444556678888889999999997765544 3466666665
Q ss_pred HHhhhccccC
Q 046591 328 QIFSRSNRRK 337 (711)
Q Consensus 328 ~~~~~~~~~~ 337 (711)
.....++...
T Consensus 339 ~a~A~a~~~~ 348 (378)
T PF05684_consen 339 PAVAAAKGPS 348 (378)
T ss_pred HHHHHhcCCc
Confidence 5555555433
No 58
>PRK10490 sensor protein KdpD; Provisional
Probab=96.80 E-value=0.0062 Score=74.26 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=89.9
Q ss_pred cccceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHH
Q 046591 386 DAELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQ 465 (711)
Q Consensus 386 ~~e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 465 (711)
....|||||++.+++...+++-+..++ .+.+++.+++|+.....+. ......+++.+.++ +++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA-~~~~a~~~~l~V~~~~~~~---------------~~~~~~~~l~~~~~-lA~ 310 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLA-ARLGSVWHAVYVETPRLHR---------------LPEKKRRAILSALR-LAQ 310 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHH-HhcCCCEEEEEEecCCcCc---------------CCHHHHHHHHHHHH-HHH
Confidence 356889999999999999999999999 5788899999986421110 00112344555553 555
Q ss_pred hcCCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCCchh-HHHHHHHHhhcCC-cceEEEec
Q 046591 466 QSSGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTNSYV-IKKITKKVLKMAP-CSVGILFD 533 (711)
Q Consensus 466 ~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~~~~-~gs~~~~Vl~~Ap-C~V~ilvd 533 (711)
+..+ ++... ..+++.+.|.++|++++++.||||-++....+ -||+.+++++.+| .+|-|+-+
T Consensus 311 ~lGa--~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~~~~~s~~~~l~r~~~~idi~iv~~ 374 (895)
T PRK10490 311 ELGA--ETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRWWRRESFADRLARLGPDLDLVIVAL 374 (895)
T ss_pred HcCC--EEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCCccCCCHHHHHHHhCCCCCEEEEeC
Confidence 4322 33332 23689999999999999999999987633233 3699999999996 78888743
No 59
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.71 E-value=0.044 Score=56.52 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=39.3
Q ss_pred HHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046591 39 LIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQ 86 (711)
Q Consensus 39 l~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~ 86 (711)
+..++|-.|-++|++...+.-||...+-+.=++++.+++.+++.+++.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~ 98 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPE 98 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCc
Confidence 347889999999999988888888777777888888888888887764
No 60
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.30 E-value=0.088 Score=54.95 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHH
Q 046591 210 MVVCSYFVSESMGLIGFWGPIILGVITPLIPPMGS-LLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLI 287 (711)
Q Consensus 210 ~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~~~-~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii 287 (711)
.....+.+++.++++.++|-.++|+++.... ++- .-.+.++.+ ..+-+.++....|+++|++ +.. .+.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWK--LRKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHH
Confidence 3455678899999999999999999996531 110 111234554 4555667777889999998 754 222222222
Q ss_pred HHHHHhH-HHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCchhhH
Q 046591 288 WVATTVK-LFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYG 345 (711)
Q Consensus 288 ~~~~~~K-~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~ 345 (711)
...++.- ++.++...++++.++.+++.+|..+++-.. -+.+.+..|.+..+.+.-.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~--~v~~~il~~~~~~~~~~g~ 135 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSST--AVVVQVLKERGLLKTPFGQ 135 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH--HHHHHHHHHcCcccChHHH
Confidence 2222222 334444567789999999999998886542 2334445566655544433
No 61
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.30 E-value=0.077 Score=62.07 Aligned_cols=116 Identities=14% Similarity=-0.035 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhH
Q 046591 204 VIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPMGS-LLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFL 281 (711)
Q Consensus 204 ~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~~~-~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~ 281 (711)
+...++.+.++..++..+|+++++|=.++|+++.... ++- .-.+.++.+ ..+-+.++...+|+.+|+. +... ..
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~-lg~i~~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~--~~ 85 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWG-LRLVTDVESILHF-AEFGVVLMLFVIGLELDPQRLWKL--RR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCccc-ccCCCCHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH--HH
Confidence 4556666777888889999999999999999995421 111 112335554 5566667778889999998 6532 11
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcch
Q 046591 282 IVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRG 323 (711)
Q Consensus 282 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG 323 (711)
.+..+-..-++.-++..+..++++|++|..++.+|..++.-.
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 111111111122223334456678999999999998776544
No 62
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.29 E-value=0.13 Score=54.38 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHH----HhhchhhHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchh
Q 046591 206 ALNIMVVCSYFVSE----SMGLIGFWGPIILGVITPL-IPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTG 279 (711)
Q Consensus 206 ~il~~~l~~~~~~~----~~g~~~~lGaf~~Gl~l~~-~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~ 279 (711)
+.+++.....++++ ..++++.+=|.+.|+++.| .....+...+-++.- ...++.+=.+..|.++++. +.+. .
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-G 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-C
Confidence 33444444444544 3577788889999999998 544455666656553 5678889999999999998 5432 3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCch--hhHHHHHHHHHHHHh
Q 046591 280 FLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDE--SYGVMVMTAMLKSAI 357 (711)
Q Consensus 280 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~--~f~~lvl~~ll~t~i 357 (711)
+...+..++..++.=..+.++..+.+|++.+.+..+|...+.-|..+++...-..+.+- ++. ..+.+.+..++..++
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~-~~~a~ava~V~lfg~vam~~ 161 (305)
T PF03601_consen 83 WKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKE-EDVAYAVATVFLFGTVAMFL 161 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCC-CceeeeehHHHHHHHHHHHH
Confidence 32233333333333334444444999999999999999999999998877665544432 111 122223333344555
Q ss_pred HHHHHHHhhccchhhhhhcccccc
Q 046591 358 ALPLLRVFYDTSRRYVAYKRRTIQ 381 (711)
Q Consensus 358 ~~pl~~~~~~p~~~~~~~~~r~i~ 381 (711)
.|.+.+++.-+...+--+---+++
T Consensus 162 ~P~l~~~l~l~~~~~G~w~G~sIh 185 (305)
T PF03601_consen 162 YPLLGHALGLSPQQFGAWAGGSIH 185 (305)
T ss_pred HHHHHHHhCCCHHHHHHHhhhhhc
Confidence 666666665444444333333343
No 63
>PRK10490 sensor protein KdpD; Provisional
Probab=95.99 E-value=0.037 Score=67.61 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=83.7
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEeecCc
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHSVKEG 628 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g 628 (711)
..||+|...|+|.++..++.|.|||+..++.++++||.+++....++.+++...+.++ +..+. +.+.+ ...-+|-
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~-lA~~l-Ga~~~---~~~~~dv 324 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALR-LAQEL-GAETA---TLSDPAE 324 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHH-HHHHc-CCEEE---EEeCCCH
Confidence 4689999999999999999999999999999999999877533222233332223332 33322 11211 1222222
Q ss_pred -hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEee
Q 046591 629 -SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQ 693 (711)
Q Consensus 629 -~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq 693 (711)
+++.+++++. +.+.||||++++. .| + -.|++.|.|.... .+.-|.||-.
T Consensus 325 a~~i~~~A~~~--~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~~--~~idi~iv~~ 374 (895)
T PRK10490 325 EKAVLRYAREH--NLGKIIIGRRASR---------RW--W-RRESFADRLARLG--PDLDLVIVAL 374 (895)
T ss_pred HHHHHHHHHHh--CCCEEEECCCCCC---------CC--c-cCCCHHHHHHHhC--CCCCEEEEeC
Confidence 4678888886 8999999999762 24 1 3579999998873 3457888853
No 64
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.19 Score=55.54 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCC-CC---CchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCc
Q 046591 203 HVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPL-IP---PMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTL 277 (711)
Q Consensus 203 ~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~-~~---~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~ 277 (711)
.+..+++.+...+.+.+.+|+++++|=.++|+++.+ +. ...++..+-+..++ .-++...+|+.+|+. +...
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelG----vi~LlF~~GLE~~~~~l~~~ 85 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELG----VVFLLFLIGLEFDLERLKKV 85 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHh----HHHHHHHHHHCcCHHHHHHh
Confidence 355666667777799999999999999999999987 21 12234444444543 334556789999998 6532
Q ss_pred hhhHHHHHHHHHHHHhHHHHH--HHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHH
Q 046591 278 TGFLIVEFLIWVATTVKLFAI--IIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAM 352 (711)
Q Consensus 278 ~~~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~l 352 (711)
.... ......+.+..=++.. +... ++++++.+++.+|..+..-... +.+.+..|.|....+.-...+...+
T Consensus 86 ~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~~--i~~~iL~e~~~~~~~~g~~~l~~~i 158 (397)
T COG0475 86 GRSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSSTA--IVLKILMELGLLKTREGQLILGALV 158 (397)
T ss_pred chhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHH--HHHHHHHHhccccchHHHHHHHHHH
Confidence 2221 2222222222222222 2222 5899999999999877655442 2334444555555444444433333
No 65
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.82 E-value=0.2 Score=58.00 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHH
Q 046591 205 IALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIP-PMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLI 282 (711)
Q Consensus 205 ~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~-~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~ 282 (711)
..+++.+++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|++ +..... .
T Consensus 12 ~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~~--~ 87 (558)
T PRK10669 12 VGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVKS--I 87 (558)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHhh--H
Confidence 344566667778888899999999999999996531 11111 1234444 4455556667779999998 753211 1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCchh
Q 046591 283 VEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDES 343 (711)
Q Consensus 283 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~ 343 (711)
.....+...+.=++.+++....++.++.+++.+|..++.-+. .+++....|.|.++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 88 AIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 111111111222233344456778999999999987776333 34455566777666543
No 66
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.81 E-value=0.19 Score=58.64 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhH
Q 046591 204 VIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIP-PMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFL 281 (711)
Q Consensus 204 ~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~-~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~ 281 (711)
..+.++...++..++..+|+++++|=.++|+++.... ..-.. .+.++.+ ..+-+.++...+|+.+|+. +.......
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~~ 87 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRSI 87 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555566677888899999999999999986521 11111 1234444 4555666777789999998 65322111
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhc
Q 046591 282 IVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNC 321 (711)
Q Consensus 282 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~ 321 (711)
..+....++.-.+.......++|++|..++.+|..+..
T Consensus 88 --~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 88 --FGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111111111111222344568999999888875543
No 67
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=95.60 E-value=3.8 Score=43.34 Aligned_cols=234 Identities=12% Similarity=0.068 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHH----HHHHHHHhhccCCCCCch-hhHHHHHHHHh
Q 046591 31 ISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIV----TSLSTVIVNQFDPLDGEL-GESVQMVTGLE 105 (711)
Q Consensus 31 l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~----g~~~~~~l~~~~~~~~~~-~~~~~~l~~~~ 105 (711)
++.--.+|+++.|+=.=+++|++.+++..|+.-.+. .+...-+++ .+++++++.... ++. ... +++|++=
T Consensus 49 ~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~-lsL~~Nwii~P~lm~~la~~fl~~~---pey~~Gl-ILlglAp 123 (342)
T COG0798 49 VSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLI-LSLFVNWIIGPLLMFALAWFFLPDE---PEYRAGL-ILLGLAP 123 (342)
T ss_pred eehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHHhCCC---HHHHHHH-HHHHhhh
Confidence 444557888899999989999999987766533222 223333333 233444443222 111 122 3444433
Q ss_pred hhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 046591 106 STISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINLLNLMSFMLIVIFIVFIIRPV 185 (711)
Q Consensus 106 s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~r~~ 185 (711)
|... ..+- + ++.+.+. ..++..-.+||++.+++++......-+... ....++.++..+++.+.+-++.+.+
T Consensus 124 C~aM-Vivw---~--~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~--~~v~~~~i~~Sv~lyl~iPli~G~l 194 (342)
T COG0798 124 CIAM-VIVW---S--GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGVIS--ISVPFWTIAKSVLLYLGIPLIAGVL 194 (342)
T ss_pred hHHH-HHHH---H--hhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 2222 2 3333333 356666778999999888655444333221 0112255666655555555666666
Q ss_pred HHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCchhHHHHHHHHHH-HHhhHHHHHH
Q 046591 186 MVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPMGSLLTDKMEAFV-WSVFLPCFLI 264 (711)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~-~~~~~PlFF~ 264 (711)
.+++..|.... |.+ .++...+++++. -+++.-++ +
T Consensus 195 TR~i~~k~kg~----~~~---------------------------------------~~~f~p~ispi~ligLl~Tiv-l 230 (342)
T COG0798 195 TRYILIKKKGR----EWY---------------------------------------ESRFLPKISPIALIGLLLTIV-L 230 (342)
T ss_pred HHHHHHHhccc----hHH---------------------------------------HHHHHhhcChHHHHHHHHHHH-H
Confidence 66666664322 111 112222222221 11111111 1
Q ss_pred HhcccceecccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcc
Q 046591 265 NSGKGVNLFSTTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCR 322 (711)
Q Consensus 265 ~~G~~~d~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~k 322 (711)
..+.+-+.-..++.+...+++-.++-+...+..+++.++..|+|.+++..+++....+
T Consensus 231 iF~~qg~~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSN 288 (342)
T COG0798 231 IFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASN 288 (342)
T ss_pred HHHHhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccc
Confidence 1122222112333344455555556666778888888999999999998887754443
No 68
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.50 E-value=0.15 Score=53.59 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=85.5
Q ss_pred HHHhhchhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHH
Q 046591 218 SESMGLIGFWGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLF 296 (711)
Q Consensus 218 ~~~~g~~~~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~ 296 (711)
.+..|+++..=|.+.|+++...+..+.+...-++.- .-.++.+=.+..|+++++. +.+. .+. .+.+....+..-++
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t~~ 108 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSSTFL 108 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHHHH
Confidence 445566688889999999997665665666666654 6778888899999999998 6532 222 34444555556677
Q ss_pred HHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccc
Q 046591 297 AIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNR 335 (711)
Q Consensus 297 ~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~ 335 (711)
.+++..+++|++++.+..+|..-+.-|..+++...-..+
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCC
Confidence 777778899999999999999999899888777654433
No 69
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=95.43 E-value=0.032 Score=47.01 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=39.6
Q ss_pred ChhHHHHHhhhhcCccEEEeccccCC---chhHH-HHHHHHhhcCCcceE
Q 046591 484 SMHEDICSMTFEKCTSLVIIPFQKTN---SYVIK-KITKKVLKMAPCSVG 529 (711)
Q Consensus 484 ~~~~~I~~~A~e~~~dlIimg~h~~~---~~~~g-s~~~~Vl~~ApC~V~ 529 (711)
.+++.+.+.|++.++|.|++|.|+++ ....| ++..++.+.++|||.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCcee
Confidence 78999999999999999999999943 33345 789999999999975
No 70
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=95.41 E-value=1.5 Score=46.77 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhhhc
Q 046591 32 SVFESFGLIYITFVTSVRADLSIMTKSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLESTI 108 (711)
Q Consensus 32 ~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s~T 108 (711)
+.....++..++|..|++++.+.+++..++. ...-...+++.-++++++......+.+ .. +..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~------~~-l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLP------PE-LALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCC------HH-HHHHHHHHhh
Confidence 4677888899999999999999998755443 322233333333345555555543221 12 2333322222
Q ss_pred cHH-HHHH-HHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhc-cccCcchhhH-HHHHHHHHHHHHHHHHHHH
Q 046591 109 SFY-GILE-ILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDI-QEAGIGSINL-LNLMSFMLIVIFIVFIIRP 184 (711)
Q Consensus 109 s~~-vv~~-iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~-~~~~~~~~~~-~~~~~~i~~~~~~~~v~r~ 184 (711)
-++ +-+. ++++. .+.+. ..++..+.++.+++.++.-+......+ ++.+.+.... ..+...+++=.+.+-+.|+
T Consensus 103 lPtTv~S~v~~T~~--AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~ 179 (313)
T PF13593_consen 103 LPTTVSSSVVLTRL--AGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRR 179 (313)
T ss_pred CCchhhHHHHHHHH--cCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111 12232 23333 457778888999988887555554442 2221111222 2333333333344555555
Q ss_pred HHHHHHhh
Q 046591 185 VMVWMMRQ 192 (711)
Q Consensus 185 ~~~~~~~~ 192 (711)
...+..+|
T Consensus 180 ~~~~~~~~ 187 (313)
T PF13593_consen 180 WVPKWVAR 187 (313)
T ss_pred HHHHHHHH
Confidence 55444444
No 71
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.24 E-value=1.3 Score=43.38 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhhhccHHHH
Q 046591 37 FGLIYITFVTSVRADLSIMTKSGRLGIVIG---IGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLESTISFYGI 113 (711)
Q Consensus 37 ~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~---~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~~vv 113 (711)
+.+.+.||..|+++|++++++..|+...+. +.++++.-+++++++..+.... +.... .++-.+.+.. +..
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~---~~~~~--Gl~l~~~~P~--~~~ 74 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS---PALAL--GLLLVAACPG--GPA 74 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT-----HHHHH--HHHHHHHS-B---TH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHH--HHHHHhcCCc--HHH
Confidence 456789999999999999997766544322 2334433334455542222211 11111 1111222222 122
Q ss_pred HHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 046591 114 LEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSD 154 (711)
Q Consensus 114 ~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~ 154 (711)
+...+++ .+.+. .++.+...++.+.+.+..-+...+..
T Consensus 75 s~~~t~l--~~Gd~-~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 75 SNVFTYL--AGGDV-ALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHHHHH--TT--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCc-ccccceeeHHHHHHHHHHHHHHHHHh
Confidence 2333333 23333 36667777777777777655555443
No 72
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.22 E-value=1.6 Score=46.62 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=73.1
Q ss_pred hchhhHHHHHHHhhcCCCCCchhHHHHHHHHH---HHHhhHHHHHHHhccc-ceec-ccCchhhHHHHHHHHHHHHhHHH
Q 046591 222 GLIGFWGPIILGVITPLIPPMGSLLTDKMEAF---VWSVFLPCFLINSGKG-VNLF-STTLTGFLIVEFLIWVATTVKLF 296 (711)
Q Consensus 222 g~~~~lGaf~~Gl~l~~~~~~~~~l~~~l~~~---~~~~~~PlFF~~~G~~-~d~~-l~~~~~~~~~~~ii~~~~~~K~~ 296 (711)
++|+..-..++|.++....-..++++++...+ ...-+.+..++-+|+. +|++ +.+.-+| ..+++++..+++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~-~~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW-QFVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch-hHhhhHHHHHHHHHH
Confidence 56777777777777766544445566555443 2333444444455766 7876 4432223 345556666777888
Q ss_pred HHHHHHhhcCCChhH-HHHHHHHhhcc-hhHHHHHhhhccccCCC
Q 046591 297 AIIIPSLYYKMPFMD-ALSLGLLLNCR-GIYDIQIFSRSNRRKML 339 (711)
Q Consensus 297 ~~~l~~~~~~~~~~~-a~~lgl~l~~k-G~~~l~~~~~~~~~~~i 339 (711)
++++.+++.|+-+-| ++..|+.|+.+ |.-|+++.+.+.+.+++
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lm 326 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLI 326 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcccc
Confidence 898999999875555 56667677766 45567777776666654
No 73
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.22 E-value=0.24 Score=57.34 Aligned_cols=118 Identities=9% Similarity=0.033 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCc--hhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHH
Q 046591 206 ALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPM--GSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLI 282 (711)
Q Consensus 206 ~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~--~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~ 282 (711)
+++++..++..+++.+|++.+++-.++|+++.....- ...-.+-.+.+ ..+.+++.....|+++|+. +.. .+..
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~~ 89 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALGP 89 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHHH
Confidence 4445555666777888999999999999988764211 00111233444 6778888888999999998 764 3333
Q ss_pred HHHHHHHHHHhH-HHHHHHHHhhcCCChhHHHHHHHHhhcchhHH
Q 046591 283 VEFLIWVATTVK-LFAIIIPSLYYKMPFMDALSLGLLLNCRGIYD 326 (711)
Q Consensus 283 ~~~ii~~~~~~K-~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~ 326 (711)
...+....++.- .+.+++..++++++|.+++.+|.++++-....
T Consensus 90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~ 134 (562)
T PRK05326 90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAA 134 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHH
Confidence 333323222222 23244455677999999999999888776553
No 74
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.15 E-value=5.5 Score=42.54 Aligned_cols=155 Identities=11% Similarity=0.050 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchh--hHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCch-h
Q 046591 204 VIALNIMVVCSYFVSESMGLIG--FWGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLT-G 279 (711)
Q Consensus 204 ~~~il~~~l~~~~~~~~~g~~~--~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~-~ 279 (711)
+...+...+..+++.+.+++.. .+||++.+.++.......-.+-+.+.. +-.-+.-.++|.+++.. +.+.. .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~----~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVN----AAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHH----HHHHHHHHHHHccccHHHHHHHHHH
Confidence 4455556667777778777744 688888777765432111111122222 22224456788998876 54322 3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHH
Q 046591 280 FLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIAL 359 (711)
Q Consensus 280 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~ 359 (711)
+...++..+..+..-.+.+++..++.++++.+++ +.+.|-|.-|+.+.....+.+.---..+.++=+.. .-...|
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl~~--v~~~~p 307 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTAL---LATAPGGLAEMALIALALGADVAFVAAHQVVRLLF--VLLLAP 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCCChHHHHHHHHHHHHH--HHHHHH
Confidence 3444555556666677788888899999998876 34699999998876655443321111222221111 123467
Q ss_pred HHHHHhhc
Q 046591 360 PLLRVFYD 367 (711)
Q Consensus 360 pl~~~~~~ 367 (711)
++.|++.|
T Consensus 308 ~~~r~~~r 315 (318)
T PF05145_consen 308 FIARWLRR 315 (318)
T ss_pred HHHHHHHH
Confidence 77887654
No 75
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=94.86 E-value=0.62 Score=49.67 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=68.8
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 046591 228 GPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYK 306 (711)
Q Consensus 228 Gaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 306 (711)
.|++.|..+.+- .+.+.+...+ +-.+++|++-...|.++|+. +... .+. ..++.+..++......+...|+++
T Consensus 178 lplliG~~lgnl---~~~l~~~~~~-Gi~~lLp~~~~~lG~~l~lq~i~~~-G~~-GilL~~~~~~~t~~~~~~~~Rl~~ 251 (326)
T PRK05274 178 LPLLVGFILGNL---DPELRQFLGK-AVPVLIPFFAFALGNGIDLGTIITA-GLS-GILLGVAVVAVTGIPLYLADRLIG 251 (326)
T ss_pred HHHHHHHHHHhH---HHhhHHHhcC-CcEEEHHHHHHHHhcceeHhHHHhc-CCc-chhhhhhHhhccchhhHhHhheee
Confidence 788899988883 3334444444 45679999999999999997 5321 232 222223333344454455557774
Q ss_pred CChh---HHHHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhhccch
Q 046591 307 MPFM---DALSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSR 370 (711)
Q Consensus 307 ~~~~---~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~ 370 (711)
.... -+...+..-+.-|-..++...-.+ +-..+..-..+..++++++++.|.+..+++|+.+
T Consensus 252 ~~~g~~g~a~~ttaG~aic~pAAvaa~~p~~--~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~ 316 (326)
T PRK05274 252 GGNGVAGAAAGSTAGNAVATPAAVAAADPSF--APFAPAATAQVAAAVIVTAILAPILTAWWSKRVG 316 (326)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhhcccc--ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3222 222222222222322322222222 2223333333344455556666666667655433
No 76
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=94.82 E-value=2.3 Score=46.41 Aligned_cols=284 Identities=10% Similarity=0.062 Sum_probs=149.7
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHH----h--hccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Q 046591 22 IFTPKTQLVISVFESFGLIYITFVT----S--VRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELG 95 (711)
Q Consensus 22 lf~~~~~~~l~~la~~Gl~~~lF~~----G--le~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~ 95 (711)
++|++..+..+.+-+-+=.+.+|.+ | +.||-+.+.|...|-+..-+.+.+..++++.+.+.+++... ..
T Consensus 77 ~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~-----~~ 151 (414)
T PF03390_consen 77 LIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSF-----KD 151 (414)
T ss_pred CCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HH
Confidence 4555444444444433222233333 3 47999999999999888888888888888888888876543 12
Q ss_pred hHHHHHHHHhh-----hccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhcc---c-cC-----cc
Q 046591 96 ESVQMVTGLES-----TISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQ---E-AG-----IG 161 (711)
Q Consensus 96 ~~~~~l~~~~s-----~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~---~-~~-----~~ 161 (711)
.. +++.+-.. .-+.|.-.-.=+-++.-..+.=-.++.+.++.++++++.-+++--+.... + .| .+
T Consensus 152 ~i-~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~ 230 (414)
T PF03390_consen 152 AI-FYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGD 230 (414)
T ss_pred HH-HHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCc
Confidence 22 33333221 11222222111122322334444566677777777777666555443211 0 00 00
Q ss_pred ---------hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 046591 162 ---------SINL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPII 231 (711)
Q Consensus 162 ---------~~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~ 231 (711)
.... ..-...-++..+.+|....++..++ ..+ .+.+.++.. .+...+|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i-------~ih-~~a~mIi~~-----~i~K~~~l-------- 289 (414)
T PF03390_consen 231 DEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLI-------GIH-AYAWMIILV-----AIVKAFGL-------- 289 (414)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-------CCc-HHHHHHHHH-----HHHHHhCc--------
Confidence 0011 1112222233444455444444444 111 233322221 12222221
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhccc-ceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCCh
Q 046591 232 LGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKG-VNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPF 309 (711)
Q Consensus 232 ~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~-~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~ 309 (711)
+|+ .-++=..+...|...-+.+-..+-+|+. +|+. +.+.-++. .+++++..+++-.+++++.+++.|+-+
T Consensus 290 ----vP~---~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YP 361 (414)
T PF03390_consen 290 ----VPE---SLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYP 361 (414)
T ss_pred ----CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 222 2233344566666667777777888988 8987 54322444 344555566777888889999999765
Q ss_pred hH-HHHHHHHhhcc-hhHHHHHhhhccccCCCC
Q 046591 310 MD-ALSLGLLLNCR-GIYDIQIFSRSNRRKMLS 340 (711)
Q Consensus 310 ~~-a~~lgl~l~~k-G~~~l~~~~~~~~~~~i~ 340 (711)
-| ++..|+.|+.+ |.-|+++.+.+.+.+++.
T Consensus 362 vEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 362 VESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred HHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 55 57777677766 455677777776666543
No 77
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.82 E-value=6.2 Score=41.46 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcch--hHHHHHHH-HH-HHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHh-h
Q 046591 32 SVFESFGLIYITFVTSVRADLSIMTKSGR--LGIVIGIG-SY-LLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLE-S 106 (711)
Q Consensus 32 ~~la~~Gl~~~lF~~Gle~d~~~l~~~~~--~~~~i~~~-~~-~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~-s 106 (711)
..+.-..+.+.||..|+.++++.+++..+ +...+++. .+ +.|++ +++++.+++. + . . ...|..+ +
T Consensus 7 ~~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~l----~---~-~-~~~glvL~~ 76 (286)
T TIGR00841 7 STILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFKL----P---P-E-LAVGVLIVG 76 (286)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhCC----C---H-H-HHHHHHhee
Confidence 33334448899999999999999988665 33333333 33 34544 3555554421 1 1 1 2222222 2
Q ss_pred hccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046591 107 TISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVL 152 (711)
Q Consensus 107 ~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~ 152 (711)
....++.+.++.++- +.+ ..++.+...++-+++.+.+-+...+
T Consensus 77 ~~P~~~~s~v~t~~~--~gn-~~la~~~~~~stlls~vt~Pl~l~~ 119 (286)
T TIGR00841 77 CCPGGTASNVFTYLL--KGD-MALSISMTTCSTLLALGMMPLLLYI 119 (286)
T ss_pred eCCCchHHHHHHHHh--CCC-HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 222223333444432 222 2456666667777776665544443
No 78
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.78 E-value=0.8 Score=49.01 Aligned_cols=154 Identities=11% Similarity=0.060 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHH-----hhchhhHHHHHHHhhcCCCC--CchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCch
Q 046591 207 LNIMVVCSYFVSES-----MGLIGFWGPIILGVITPLIP--PMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLT 278 (711)
Q Consensus 207 il~~~l~~~~~~~~-----~g~~~~lGaf~~Gl~l~~~~--~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~ 278 (711)
.+.+.+.+.++++. .++++.+=|.+.|+++.+.. +.......-++ +....++-+=.+..|.++++. +...
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~- 87 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADV- 87 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHh-
Confidence 33444444455443 46777777889999998832 22233333333 335667777888999999998 5432
Q ss_pred hhHHHHHHHHHHHHhHHHH-HHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCch-hh--HHHHHHHHHH
Q 046591 279 GFLIVEFLIWVATTVKLFA-IIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDE-SY--GVMVMTAMLK 354 (711)
Q Consensus 279 ~~~~~~~ii~~~~~~K~~~-~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~-~f--~~lvl~~ll~ 354 (711)
.+. .+.+.+.....-+.. .++..+.+|++++.+..+|...+--|..+++...-..+.+ +++ .+ +.+++.-.+.
T Consensus 88 G~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~a 164 (335)
T TIGR00698 88 GPN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTG 164 (335)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHH
Confidence 232 223323333333444 4454578999999999999999999998877765544432 112 11 2222333344
Q ss_pred HHhHHHHHHHh
Q 046591 355 SAIALPLLRVF 365 (711)
Q Consensus 355 t~i~~pl~~~~ 365 (711)
.++.|++.+++
T Consensus 165 m~l~P~l~~~l 175 (335)
T TIGR00698 165 IFLYPSIYHYA 175 (335)
T ss_pred HHHHHHHHHHH
Confidence 44556666554
No 79
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=94.63 E-value=5.3 Score=42.89 Aligned_cols=100 Identities=11% Similarity=0.078 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhH---HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhhhccH-HH
Q 046591 37 FGLIYITFVTSVRADLSIMTKSGRLG---IVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLESTISF-YG 112 (711)
Q Consensus 37 ~Gl~~~lF~~Gle~d~~~l~~~~~~~---~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~-~v 112 (711)
+++.++||-.|+++++++++|..|+. ...-+.++++-=+++++++..+.... .. +.+|..+-...+ .+
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~-------p~-l~~GliLv~~~Pgg~ 118 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDL-------FE-YIAGLILLGLARCIA 118 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------HH-HHHHHHHHHhcchHH
Confidence 45668999999999999988765543 32233333332234555555442221 11 333333322211 12
Q ss_pred HHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHH
Q 046591 113 ILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGT 147 (711)
Q Consensus 113 v~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~ 147 (711)
.+.+.+.+ .+.+.. ++++...++.+++.++.-
T Consensus 119 ~S~v~T~l--AkGnva-lsv~lt~~stLl~~~~~P 150 (328)
T TIGR00832 119 MVFVWNQL--AKGDPE-YTLVLVAVNSLFQVFLYA 150 (328)
T ss_pred HHHHHHHH--cCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 33333443 244442 556666677776665553
No 80
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.45 E-value=0.14 Score=59.36 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=84.6
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCC-eEEEEEeecC
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKN-VRYIKHSVKE 627 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~-v~y~e~~v~~ 627 (711)
..+|+|.-.+++....-.+.|.|+|...++..|++|+.+|+.....+.+++.-++.++=.+.-. .+. ..|. ..+
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lG--ae~~~l~~-~dv-- 322 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELG--AEIVTLYG-GDV-- 322 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhC--CeEEEEeC-CcH--
Confidence 3689999999999999999999999999999999999998876554444443333332222211 221 2222 222
Q ss_pred chhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEee
Q 046591 628 GSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQ 693 (711)
Q Consensus 628 g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq 693 (711)
+.++.+++++. +.--|++|++.+. .|-+.-. |.+.|.|++.- ....|-+|--
T Consensus 323 ~~~i~~ya~~~--~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~~--~~idv~ii~~ 374 (890)
T COG2205 323 AKAIARYAREH--NATKIVIGRSRRS---------RWRRLFK-GSLADRLAREA--PGIDVHIVAL 374 (890)
T ss_pred HHHHHHHHHHc--CCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhcC--CCceEEEeeC
Confidence 23477788875 8999999999873 5644322 99999999873 3335555543
No 81
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.33 E-value=0.26 Score=57.39 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=85.1
Q ss_pred cccceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHH
Q 046591 386 DAELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQ 465 (711)
Q Consensus 386 ~~e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 465 (711)
....|||||++.+.....+++-+..++. +.....+++|+.....+..+ ....+-+..-.++++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~-~~~a~~~av~v~~~~~~~~~----------------~~~~~~l~~~~~Lae 308 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLAS-RLHAKWTAVYVETPELHRLS----------------EKEARRLHENLRLAE 308 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHH-HhCCCeEEEEEecccccccc----------------HHHHHHHHHHHHHHH
Confidence 4468999999999999999999998884 77788899998753221110 011222333334444
Q ss_pred hcCCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCC---chhHHHHHHHHhhcCC-cceEEE
Q 046591 466 QSSGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN---SYVIKKITKKVLKMAP-CSVGIL 531 (711)
Q Consensus 466 ~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~---~~~~gs~~~~Vl~~Ap-C~V~il 531 (711)
+..+ .+.+ ..+ +++.+.|.++|+++++.-||+|-+... +.+-|++.+++++.+| .+|-|+
T Consensus 309 ~lGa--e~~~--l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 309 ELGA--EIVT--LYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred HhCC--eEEE--EeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEe
Confidence 3222 2222 223 689999999999999999999987632 3345999999999985 455554
No 82
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=94.26 E-value=9.1 Score=40.95 Aligned_cols=156 Identities=11% Similarity=0.066 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchh--hHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCch-h
Q 046591 204 VIALNIMVVCSYFVSESMGLIG--FWGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLT-G 279 (711)
Q Consensus 204 ~~~il~~~l~~~~~~~~~g~~~--~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~-~ 279 (711)
+.+.+...++.+.+...+++.. .+|+++.|..+.-+....-++-+-+..+ -.-+.-..+|.++|-. +.... .
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~~v----a~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLLAV----AQALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHHHH----HHHHHHHHHcccccHHHHHHhHhh
Confidence 4555555666666677766654 6888888888876542222222222222 1224456788888866 43222 2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCch-hhHHHHHHHHHHHHhH
Q 046591 280 FLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDE-SYGVMVMTAMLKSAIA 358 (711)
Q Consensus 280 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~-~f~~lvl~~ll~t~i~ 358 (711)
....++.++..++.-...+++.+++.+.++.++. +..+|-|.-++.....+.+. |.. +-+.=++=.++...+.
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~---La~sPGGl~~ma~~A~~l~a---d~a~V~a~q~lRll~il~i~ 339 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAY---LATSPGGLDTMAAIAAALGA---DPAFVMALQVLRLLFILLLG 339 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHcCCCcHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHH
Confidence 2234444455555566777777888999998876 33689998888776655432 222 1111122223333445
Q ss_pred HHHHHHhhccc
Q 046591 359 LPLLRVFYDTS 369 (711)
Q Consensus 359 ~pl~~~~~~p~ 369 (711)
|++.|++.+++
T Consensus 340 p~l~r~l~~~~ 350 (352)
T COG3180 340 PALARFLSKRA 350 (352)
T ss_pred HHHHHHHHHHc
Confidence 88888865443
No 83
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=94.08 E-value=0.13 Score=43.24 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=28.9
Q ss_pred EEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEee
Q 046591 552 VCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFF 586 (711)
Q Consensus 552 I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~ 586 (711)
|++++.||+|+..++.++.+.+ ..+.+++.+++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 5789999999999999999987 447788888865
No 84
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.04 E-value=5.7 Score=42.61 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHH-HHh
Q 046591 32 SVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLST-VIV 84 (711)
Q Consensus 32 ~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~-~~l 84 (711)
+.+=++|++ +.|.+++++.+.+.+.+.+.+....+...+.+++.++ ..+
T Consensus 65 k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l 114 (335)
T TIGR00698 65 PFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRL 114 (335)
T ss_pred HHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677877 5699999999999999888777766666666655554 344
No 85
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.99 E-value=0.92 Score=53.55 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=48.2
Q ss_pred HHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhh--cCCChhHHHHHHHHhhcchhH
Q 046591 255 WSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLY--YKMPFMDALSLGLLLNCRGIY 325 (711)
Q Consensus 255 ~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~--~~~~~~~a~~lgl~l~~kG~~ 325 (711)
+.+.+++-....|++++.. +.. .|..+..+++.+...-++++.+.+++ .|++|..++.+|.++++-.-+
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 5677778888889999998 764 45444444444444444445555443 599999999999999988754
No 86
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=93.68 E-value=6.4 Score=42.50 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhh-----chhhHHHHHHHhhcCCCCCch--hHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCc
Q 046591 206 ALNIMVVCSYFVSESMG-----LIGFWGPIILGVITPLIPPMG--SLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTL 277 (711)
Q Consensus 206 ~il~~~l~~~~~~~~~g-----~~~~lGaf~~Gl~l~~~~~~~--~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~ 277 (711)
++...+.+..++.+.++ +....++++.|+++.+.-+.. .++.++.-+...++-+-+|.+..=|++.+. +.+.
T Consensus 226 ~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l 305 (404)
T COG0786 226 IIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL 305 (404)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555566655 566899999999998852211 123333333346777888888888888888 7642
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhh-cchhHHHHHhhhc
Q 046591 278 TGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLN-CRGIYDIQIFSRS 333 (711)
Q Consensus 278 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~-~kG~~~l~~~~~~ 333 (711)
....++++.+-..+.-+.+.+...+..|-++..+...+..+. .-|...-+++++.
T Consensus 306 -~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM~ 361 (404)
T COG0786 306 -ALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANMQ 361 (404)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhhh
Confidence 223333333334444556666667888888777665443333 2355555565553
No 87
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=93.54 E-value=13 Score=40.45 Aligned_cols=88 Identities=22% Similarity=0.227 Sum_probs=50.7
Q ss_pred chhhHHHHHHHhhcCCCC------CchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHH-HHHHHHHhH
Q 046591 223 LIGFWGPIILGVITPLIP------PMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEF-LIWVATTVK 294 (711)
Q Consensus 223 ~~~~lGaf~~Gl~l~~~~------~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~-ii~~~~~~K 294 (711)
+....++++.|+++.+.- ...++..+++ .++.+-+|.+..=|.+++. +.+ .+...++ +++-.++.=
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~--~a~Plliil~~q~i~~~ 320 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLAD--YALPLLIILAVQTILMV 320 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 456799999999997742 1222334444 5555656666666778887 664 2332332 333333334
Q ss_pred HHHHHHHHhhcCCChhHHHHHHH
Q 046591 295 LFAIIIPSLYYKMPFMDALSLGL 317 (711)
Q Consensus 295 ~~~~~l~~~~~~~~~~~a~~lgl 317 (711)
+...++..+.+|-++ |+..++.
T Consensus 321 ~f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 321 LFAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHHHHhhhhhCCCh-hHHHHhh
Confidence 455566667777776 5555443
No 88
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.37 E-value=1.3 Score=53.63 Aligned_cols=135 Identities=7% Similarity=0.069 Sum_probs=73.1
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHh--cCCCeEEEEEEeeecCCC-----------Ccch----hhhhhHHHHHHHHHh
Q 046591 548 SAINVCVIFLGGPDDREALAYGARMT--GDQNAMLTIIRFFAVNHA-----------TKDL----IEEKNDLNLISGLRM 610 (711)
Q Consensus 548 ~~~~I~v~f~gg~ddreAl~~a~rma--~~~~~~ltvl~v~~~~~~-----------~~~~----~~~~~d~~~l~~~~~ 610 (711)
+..||++.+-+..+-...+.++.... +.....+.++|+++-... +.+. +....-|..++.|+.
T Consensus 457 ~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~ 536 (832)
T PLN03159 457 AELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFEN 536 (832)
T ss_pred CceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHH
Confidence 45688887776666666676655542 344578899999873210 0000 011112344444432
Q ss_pred ccCCCCCeEEEE-EeecC----chhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCc
Q 046591 611 STMDSKNVRYIK-HSVKE----GSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSN 685 (711)
Q Consensus 611 ~~~~~~~v~y~e-~~v~~----g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~ 685 (711)
-...++.+..+- ..+.. .+||.+.+++. ..|||++|=|...... .++.. +.+..+.+-+-+..+ ++
T Consensus 537 ~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~--~~slIilpfhk~~~~d--g~~~~--~~~~~r~~n~~VL~~---Ap 607 (832)
T PLN03159 537 YEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDK--RVSLIIIPFHKQQTVD--GGMEA--TNPAFRGVNQNVLAN---AP 607 (832)
T ss_pred HHhhcCceEEEEEEEEeCcccHHHHHHHHHHhc--CCCEEEECCCCccCCC--CCccc--cCchHHHHHHHHHcc---CC
Confidence 110011232221 11111 35677777765 8999999999643211 12332 245677777888888 78
Q ss_pred ccEEEE
Q 046591 686 ASVMVM 691 (711)
Q Consensus 686 ~svLvv 691 (711)
|||-+.
T Consensus 608 CsVgIl 613 (832)
T PLN03159 608 CSVGIL 613 (832)
T ss_pred CCEEEE
Confidence 877554
No 89
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.00 E-value=0.77 Score=52.66 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHH
Q 046591 206 ALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPPMGS-LLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIV 283 (711)
Q Consensus 206 ~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~~~-~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~ 283 (711)
..++.+.....+++.+++++.++-.++|+++...+.... .+.. +. ...+++|......|+++|.. +.. .+..+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~-~~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i 79 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EI-VLFLFLPPLLFEAAMNTDLRELRE--NFRPI 79 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HH-HHHHHHHHHHHHHHhcCCHHHHHH--HHHHH
Confidence 334444555666777788888887888877764211110 1111 11 23578888888899999998 754 33333
Q ss_pred HHHHHHHH-HhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHH
Q 046591 284 EFLIWVAT-TVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDI 327 (711)
Q Consensus 284 ~~ii~~~~-~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l 327 (711)
..+.+... +.-.+.++...+..++||..++.+|.++++...+..
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 33322222 223333333334679999999999999999887764
No 90
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=92.42 E-value=1.5 Score=46.53 Aligned_cols=131 Identities=12% Similarity=0.080 Sum_probs=79.8
Q ss_pred HHHHHhhHHHHHHHhcccceec--ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHH
Q 046591 252 AFVWSVFLPCFLINSGKGVNLF--STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQI 329 (711)
Q Consensus 252 ~~~~~~~~PlFF~~~G~~~d~~--l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~ 329 (711)
.+.++++=|+-|.-+|.-+|+. +.+++...+ .-..+=++- ..+++.+...|++.+|+-.+|.+=..-|-.++.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll---~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~ 176 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARPWASIT---VALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA 176 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhChHHHHH---HHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH
Confidence 3457889999999999999998 666543322 012222332 3455566778999999999999988889888877
Q ss_pred hhhcccc--CCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchhhh--hhccccccccCCcccceeEEEE
Q 046591 330 FSRSNRR--KMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRRYV--AYKRRTIQHTRHDAELRILACI 395 (711)
Q Consensus 330 ~~~~~~~--~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~~~--~~~~r~i~~~~~~~e~rILv~i 395 (711)
.+.-... +-|.-..|+-| ++ .=.+-||++|.+..+++|.. .|+.|.+ ....||+.|+
T Consensus 177 s~kLAp~Llg~IaVAAYsYM---aL-VPiiqPpimklLttkkER~I~M~~~~r~V-----Sk~eKilFpi 237 (399)
T TIGR03136 177 SLILAKDLFVPISIIAYLYL---SL-TYAGYPYLIKLLVPKKYRGLEVEMEFPDV-----SQRAKFVFTI 237 (399)
T ss_pred HHhhhhHhHHHHHHHHHHHH---HH-HhcccchHHHhhcCHHHHcccCccCCCCC-----CccchhHHHH
Confidence 6642211 12222233333 22 24557999999865444422 2244432 2335666553
No 91
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=92.05 E-value=2.7 Score=41.23 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhccCh-----hHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhh
Q 046591 32 SVFESFGLIYITFVTSVRADL-----SIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLES 106 (711)
Q Consensus 32 ~~la~~Gl~~~lF~~Gle~d~-----~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s 106 (711)
+...+..+.+++|.+|+++-- +.+++.+++++.+.+...+-+++.+.+.+.++... +.++ +.++.-..
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~------~~~~-lav~sG~G 95 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLS------LKES-LAVASGFG 95 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHH-HHHHccCc
Confidence 778889999999999999743 35677789999999999988888888888777322 2344 33333222
Q ss_pred hccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHH
Q 046591 107 TISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLV 150 (711)
Q Consensus 107 ~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~ 150 (711)
= +.....+++|++ +.+.|.++.-+=++-+++++++.-++.
T Consensus 96 w--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 96 W--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred H--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222333455543 568888888777777777776654443
No 92
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=91.74 E-value=7.8 Score=38.70 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcc
Q 046591 244 SLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCR 322 (711)
Q Consensus 244 ~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~k 322 (711)
+.+..-+++-+-.+-.|+|= +.+ +.. .|..+..-+++....-++.+++.++++|.+.. +.. .+.||
T Consensus 62 ~~i~~lLgPAtVAlAvPLYk-------q~~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~--Sl~Pk 128 (230)
T COG1346 62 QWINFLLGPATVALAVPLYK-------QRHLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LIL--SLLPK 128 (230)
T ss_pred HHHHHHHHHHHHHHhhHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHH--Hhccc
Confidence 34555555555556666652 233 443 57666666777777778888888999888754 333 36899
Q ss_pred hhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHh
Q 046591 323 GIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVF 365 (711)
Q Consensus 323 G~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~ 365 (711)
....=+...+..+.|-+++-+-..++++-++-+.+++++.+++
T Consensus 129 SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 129 SVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888888888998877777777778888888888888886
No 93
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=91.45 E-value=0.59 Score=48.89 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=71.3
Q ss_pred HHHhhHHHHHHHhcccceec--ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhh
Q 046591 254 VWSVFLPCFLINSGKGVNLF--STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFS 331 (711)
Q Consensus 254 ~~~~~~PlFF~~~G~~~d~~--l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~ 331 (711)
.++++=|+-|.-+|..+|+. +.+++... +-..+-++ +..+++.+...|++.+|+-.+|.+=..-|-.++.+..
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllanP~~~l----lGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLANPKTLL----LGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhCHHHHH----HHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 46888999999999999998 66653322 22222232 3445666777899999999999998888988887766
Q ss_pred hcccc--CCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchh
Q 046591 332 RSNRR--KMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRR 371 (711)
Q Consensus 332 ~~~~~--~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~ 371 (711)
.-... +-|.-..|+.|. + .=.+-||++|.+..+++|
T Consensus 142 ~LAp~LlgpIaVaAYsYMa---L-vPiiqPpimklLttkkeR 179 (360)
T PF03977_consen 142 KLAPHLLGPIAVAAYSYMA---L-VPIIQPPIMKLLTTKKER 179 (360)
T ss_pred hhhHHHHHHHHHHHHHHHH---H-HhhhhhHHHHHhcCHHHH
Confidence 43210 122222333332 2 245579999998755444
No 94
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.29 E-value=3.3 Score=39.25 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhhch--hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCch-hhHHH
Q 046591 208 NIMVVCSYFVSESMGLI--GFWGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLT-GFLIV 283 (711)
Q Consensus 208 l~~~l~~~~~~~~~g~~--~~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~-~~~~~ 283 (711)
+.+....+++.+.+|+. ..+||++++.++.-.....-.+-+.+..+ -.-+.-..+|.+++.. +.+.. .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~----~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLAL----AQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHH----HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44555666777888886 67898888887765321111222222222 2234557889999887 54322 34445
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhh
Q 046591 284 EFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSR 332 (711)
Q Consensus 284 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~ 332 (711)
+...+..+..-++.+++..++.++++.+++ ++ ..|-|..|+.....
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHH
Confidence 555666666777888888899999999886 33 58888888777554
No 95
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=90.75 E-value=5.7 Score=42.11 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHH-HHhh
Q 046591 32 SVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLST-VIVN 85 (711)
Q Consensus 32 ~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~-~~l~ 85 (711)
+.+-++|++ +.|.++++..+.+.+.+.+.+....+...+.+++.++ ..++
T Consensus 59 k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~ 109 (305)
T PF03601_consen 59 KKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFG 109 (305)
T ss_pred HHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466777876 5699999999999999988888887777777776666 5554
No 96
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=90.10 E-value=6.6 Score=37.76 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChhH---HHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHH
Q 046591 28 QLVISVFESFGLIYITFVTSVRADLSI---MTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGL 104 (711)
Q Consensus 28 ~~~l~~la~~Gl~~~lF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~ 104 (711)
....+.+.++|+.+|++.+|++--++- +++.+.+...+++.-.++|.++++..++++.+.. ... ..=..+
T Consensus 49 ~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~------~~~-~~G~~a 121 (169)
T PF06826_consen 49 ISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLN------PGI-AAGILA 121 (169)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------HHH-HHHHHH
Confidence 456788999999999999999977654 5667777788888888888888888877554432 111 222334
Q ss_pred hhhccHHHHHHHHHh
Q 046591 105 ESTISFYGILEILTD 119 (711)
Q Consensus 105 ~s~Ts~~vv~~iL~e 119 (711)
=+.|++|.+....+.
T Consensus 122 Ga~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 122 GALTSTPALAAAQEA 136 (169)
T ss_pred ccccCcHHHHHHHHh
Confidence 566888888776654
No 97
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=89.44 E-value=3.3 Score=45.16 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=63.5
Q ss_pred HHhhHHHHHHHhcccceec-ccCc-hhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHH-H-hhcchhHHHHHh
Q 046591 255 WSVFLPCFLINSGKGVNLF-STTL-TGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGL-L-LNCRGIYDIQIF 330 (711)
Q Consensus 255 ~~~~~PlFF~~~G~~~d~~-l~~~-~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl-~-l~~kG~~~l~~~ 330 (711)
.+.|+-.||..+|+..++. +... +.......+.........+.....+..+++++.-++..|- . ..-.|.. .++.
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTA-aa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTA-AAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHH-HHHH
Confidence 4567779999999999988 6532 1122222222233445555555566778888776665542 1 1222332 2333
Q ss_pred hhcccc-CCCCchhhHHH--HHHHHHHHHhHHHHHHHhhccch
Q 046591 331 SRSNRR-KMLSDESYGVM--VMTAMLKSAIALPLLRVFYDTSR 370 (711)
Q Consensus 331 ~~~~~~-~~i~~~~f~~l--vl~~ll~t~i~~pl~~~~~~p~~ 370 (711)
....+. |+-+.....+. .+..+...+++.|+.+++.|+.+
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444444 55444333332 33344456778899999876443
No 98
>TIGR00930 2a30 K-Cl cotransporter.
Probab=89.12 E-value=67 Score=39.79 Aligned_cols=124 Identities=8% Similarity=0.033 Sum_probs=75.2
Q ss_pred cccceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHH
Q 046591 386 DAELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQ 465 (711)
Q Consensus 386 ~~e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 465 (711)
+=.-++|+.+.+|+..+.+++++..+. +..+ -..+-|+++-+.+... .+.++..++.+.+-+
T Consensus 573 nwrPqiLvl~~~p~~~~~Ll~f~~~l~-~~~g-l~i~~~v~~~~~~~~~----------------~~~~~~~~~~~~~~~ 634 (953)
T TIGR00930 573 NWRPQCLVLTGPPVCRPALLDFASQFT-KGKG-LMICGSVIQGPRLECV----------------KEAQAAEAKIQTWLE 634 (953)
T ss_pred ccCCeEEEEeCCCcCcHHHHHHHHHhc-cCCc-EEEEEEEecCchhhhH----------------HHHHHHHHHHHHHHH
Confidence 445789999999999999999999998 3444 4566698874321100 111222333444433
Q ss_pred hcCCceEEEEEEEEccCCChhHHHHHhhhhc-----CccEEEeccccC----C----chhHHHHHHHHhhcCCcceEEEe
Q 046591 466 QSSGSLSLQCFTATAPYDSMHEDICSMTFEK-----CTSLVIIPFQKT----N----SYVIKKITKKVLKMAPCSVGILF 532 (711)
Q Consensus 466 ~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~-----~~dlIimg~h~~----~----~~~~gs~~~~Vl~~ApC~V~ilv 532 (711)
+ . +++.|..+-...++.+++..+.+-. +.+.++|||... + +..++.+.+ . -++...|.|++
T Consensus 635 ~--~--~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~y~~~i~~-a-~~~~~~v~i~r 708 (953)
T TIGR00930 635 K--N--KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAWETYIGIIHD-A-FDAHLAVVVVR 708 (953)
T ss_pred H--h--CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchhHHHHHHHHHH-H-HHcCCcEEEEc
Confidence 2 1 2333333334468999999888764 689999999761 1 122333333 2 35567777764
Q ss_pred c
Q 046591 533 D 533 (711)
Q Consensus 533 d 533 (711)
+
T Consensus 709 ~ 709 (953)
T TIGR00930 709 N 709 (953)
T ss_pred c
Confidence 3
No 99
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=87.55 E-value=2.6 Score=41.18 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=33.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV 588 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~ 588 (711)
||++.+.||.|+--.+.++.+.++..+.+++++++...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g 38 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHG 38 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 58999999999999999999998877888999998654
No 100
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=86.88 E-value=21 Score=36.01 Aligned_cols=107 Identities=9% Similarity=0.047 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchh
Q 046591 246 LTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGI 324 (711)
Q Consensus 246 l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~ 324 (711)
+..-+.+-+-.+-+|+|= +.+ +.. .|..+++-+++..+.-+.++++.++++|.+.. +. ..|.+|..
T Consensus 67 l~~lLgPAtVALAvPLY~-------q~~~lk~--~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~~--~Sl~pKSV 133 (232)
T PRK04288 67 ISFFLEPATIAFAIPLYK-------KRDVLKK--YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--VM--ASMLPQAA 133 (232)
T ss_pred HHHHHHHHHHHHHHHHHH-------hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhHhh
Confidence 344444444455555552 223 443 45555655666666677788888888888753 23 34689999
Q ss_pred HHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHh
Q 046591 325 YDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVF 365 (711)
Q Consensus 325 ~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~ 365 (711)
..=+...+..+.|-+..-+-...+++-++-..++++++|++
T Consensus 134 TtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 134 TTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99888888888887666666666677777777788888875
No 101
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=86.23 E-value=3.2 Score=40.33 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=33.0
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVN 589 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~ 589 (711)
+|++.+.||+|+--.+.+..++.+..+.++++++|...-
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~ 39 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGL 39 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-ST
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 589999999999999999999999999999999998653
No 102
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=86.06 E-value=0.8 Score=48.42 Aligned_cols=129 Identities=14% Similarity=0.166 Sum_probs=75.0
Q ss_pred HHHHhhHHHHHHHhcccceec--ccCchhhHHHHHHHHHHHHhHHHHHHHHHhh------cCCChhHHHHHHHHhhcchh
Q 046591 253 FVWSVFLPCFLINSGKGVNLF--STTLTGFLIVEFLIWVATTVKLFAIIIPSLY------YKMPFMDALSLGLLLNCRGI 324 (711)
Q Consensus 253 ~~~~~~~PlFF~~~G~~~d~~--l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~a~~lgl~l~~kG~ 324 (711)
+.++++=|+-|.-+|.-+|+. +.+++...+. ..+-++-+. +++.+.. .|++.+|+-.+|.+=..-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llG----aAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLG----AAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHH----HHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 456888899999999999998 6666443322 112222221 2222222 38999999999998888888
Q ss_pred HHHHHhhhcccc--CCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchh-hhhhccccccccCCcccceeEEEE
Q 046591 325 YDIQIFSRSNRR--KMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRR-YVAYKRRTIQHTRHDAELRILACI 395 (711)
Q Consensus 325 ~~l~~~~~~~~~--~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~-~~~~~~r~i~~~~~~~e~rILv~i 395 (711)
.++.+...-... |-|.-..|+.|. + .=.+-||++|.+..+++| ..-++.|++ ....||+.|+
T Consensus 206 TsIfvsskLAP~Llg~IaVAAYSYMa---L-VPiIQPpimklLTTkkER~I~M~~lr~V-----Sk~eKIlFPi 270 (433)
T PRK15475 206 TAIYLSGKLAPELLGAIAVAAYSYMA---L-VPLIQPPIMKALTTETERKIRMVQLRTV-----SKREKILFPV 270 (433)
T ss_pred hHHHhHhhhhhHhHHHHHHHHHHHHH---H-HhcccchHHHhccCHHHhCccCCCCCCC-----CccchhHHHH
Confidence 888776542211 222223333332 2 245579999987644333 222333322 2345676664
No 103
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=85.93 E-value=0.82 Score=48.36 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=74.7
Q ss_pred HHHHhhHHHHHHHhcccceec--ccCchhhHHHHHHHHHHHHhHHHHHHHHHhh------cCCChhHHHHHHHHhhcchh
Q 046591 253 FVWSVFLPCFLINSGKGVNLF--STTLTGFLIVEFLIWVATTVKLFAIIIPSLY------YKMPFMDALSLGLLLNCRGI 324 (711)
Q Consensus 253 ~~~~~~~PlFF~~~G~~~d~~--l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~a~~lgl~l~~kG~ 324 (711)
+.++++=|+-|.-+|.-+|+. +.+++...+. ..+-++-+. +++.+.. .|++.+|+-.+|.+=..-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llG----aAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLG----AAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHH----HHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 456788899999999999998 6666443322 112222221 2222222 38999999999998888888
Q ss_pred HHHHHhhhcccc--CCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchh-hhhhccccccccCCcccceeEEEE
Q 046591 325 YDIQIFSRSNRR--KMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRR-YVAYKRRTIQHTRHDAELRILACI 395 (711)
Q Consensus 325 ~~l~~~~~~~~~--~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~-~~~~~~r~i~~~~~~~e~rILv~i 395 (711)
.++.+...-... |-|.-..|+.|. + .=.+-||++|.+..+++| ..-++.|++ ....||+.|+
T Consensus 206 TsIfvsskLAP~Llg~IaVAAYSYMa---L-VPiIQPpimklLTTkkER~I~M~~lr~V-----Sk~eKIlFPi 270 (433)
T PRK15477 206 TAIYLSGKLAPELLGAIAVAAYSYMA---L-VPLIQPPIMKALTTEKERKIRMVQLRTV-----SKREKILFPV 270 (433)
T ss_pred hHHHhHhhhhhHhHHHHHHHHHHHHH---H-HhcccchHHHhccCHHHhCccCCCCCCC-----CccchhHHHH
Confidence 888776542211 222223333332 2 245579999987644333 222333322 2345676664
No 104
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=85.93 E-value=0.82 Score=48.36 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=74.8
Q ss_pred HHHHhhHHHHHHHhcccceec--ccCchhhHHHHHHHHHHHHhHHHHHHHHHhh------cCCChhHHHHHHHHhhcchh
Q 046591 253 FVWSVFLPCFLINSGKGVNLF--STTLTGFLIVEFLIWVATTVKLFAIIIPSLY------YKMPFMDALSLGLLLNCRGI 324 (711)
Q Consensus 253 ~~~~~~~PlFF~~~G~~~d~~--l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~a~~lgl~l~~kG~ 324 (711)
+.++++=|+-|.-+|.-+|+. +.+++...+. ..+-++-+. +++.+.. .|++.+|+-.+|.+=..-|-
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llG----aAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGP 205 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLG----AAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGP 205 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHH----HHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCc
Confidence 456888899999999999998 6666443322 112222221 2222222 38999999999998888888
Q ss_pred HHHHHhhhcccc--CCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchh-hhhhccccccccCCcccceeEEEE
Q 046591 325 YDIQIFSRSNRR--KMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRR-YVAYKRRTIQHTRHDAELRILACI 395 (711)
Q Consensus 325 ~~l~~~~~~~~~--~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~-~~~~~~r~i~~~~~~~e~rILv~i 395 (711)
.++.+...-... |-|.-..|+.|. + .=.+-||++|.+..+++| ..-++.|++ ....||+.|+
T Consensus 206 TsIfvsskLAP~Llg~IaVAAYSYMa---L-VPiIQPpimklLTTkkER~I~M~~lr~V-----Sk~eKIlFPi 270 (433)
T PRK15476 206 TAIYLSGKLAPELLGAIAVAAYSYMA---L-VPLIQPPIMKALTTEKERKIRMVQLRTV-----SKREKILFPV 270 (433)
T ss_pred hHHHhHhhhhhHhHHHHHHHHHHHHH---H-HhcccchHHHhccCHHHhCccCCCCCCC-----CccchhHHHH
Confidence 888776542211 222223333332 2 245579999987644333 222333322 2345676664
No 105
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=85.46 E-value=13 Score=41.62 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCC-C-CCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhH
Q 046591 205 IALNIMVVCSYFVSESMGLIGFWGPIILGVITPL-I-PPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFL 281 (711)
Q Consensus 205 ~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~-~-~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~ 281 (711)
.+++.+...++.+++.+..+...-+.+.|+.... . .+........-|.+ ..+++|+-....|+++|.. +.+ .|.
T Consensus 12 ~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~-~~l~l~ilLf~~g~~l~~~~l~~--~~~ 88 (429)
T COG0025 12 LLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELF-LVLFLAILLFAGGLELDLRELRR--VWR 88 (429)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHH-HHHHHHHHHHHhHhcCCHHHHHH--hHH
Confidence 3444555555555666666555555555544431 1 11111111112222 2567777777789999998 754 344
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhc--CCChhHHHHHHHHhhcchhHHHHH
Q 046591 282 IVEFLIWVATTVKLFAIIIPSLYY--KMPFMDALSLGLLLNCRGIYDIQI 329 (711)
Q Consensus 282 ~~~~ii~~~~~~K~~~~~l~~~~~--~~~~~~a~~lgl~l~~kG~~~l~~ 329 (711)
.+..+.....+...++..+..++. ++|+..++.+|.++++..-+.+.-
T Consensus 89 ~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 89 SILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 444444444444445544444544 899999999999999887776543
No 106
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=85.06 E-value=9.3 Score=36.14 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHH---Hhcc-hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHH
Q 046591 29 LVISVFESFGLIYITFVTSVRADLSIM---TKSG-RLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGL 104 (711)
Q Consensus 29 ~~l~~la~~Gl~~~lF~~Gle~d~~~l---~~~~-~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~ 104 (711)
.....+.++|+.+|++.+|++--++-+ ++.+ -....++..-.++|.+++..+...+.+.. ... ..=..+
T Consensus 50 ~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~------~~~-~~G~~a 122 (154)
T TIGR01625 50 SANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRIN------YAL-TAGMLA 122 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHH-HHHHHh
Confidence 467788999999999999999887654 4433 13344445555566555555554443332 111 222344
Q ss_pred hhhccHHHHHHHHHhhc
Q 046591 105 ESTISFYGILEILTDMK 121 (711)
Q Consensus 105 ~s~Ts~~vv~~iL~el~ 121 (711)
=+.|+.|.+....+..+
T Consensus 123 Ga~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 123 GATTNTPALDAANDTLR 139 (154)
T ss_pred ccccChHHHHHHHHHhc
Confidence 67788888887665443
No 107
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=85.06 E-value=4.4 Score=39.24 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=33.4
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV 588 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~ 588 (711)
+|++.+.||.|+--++.++.+..++.+.+++++++...
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 58899999999999999999988777788999998754
No 108
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=83.89 E-value=5.5 Score=39.11 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=62.2
Q ss_pred HHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCch-hhHHHHHHHHHHHHhHHHHHHHHHhh
Q 046591 227 WGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLT-GFLIVEFLIWVATTVKLFAIIIPSLY 304 (711)
Q Consensus 227 lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~ 304 (711)
++++++|+++....+......++.... .+.+=+|++-+.+.-|-. +.+.. .-+..+.+-+..+++-++++++.+++
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~~~~~~~--~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLIDKISTY--ALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhcccccccccHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655322122222333332 233445555444444522 22211 11245667777788999999999999
Q ss_pred cCCChhHHHHHHHHhhcchhHHHHHhh
Q 046591 305 YKMPFMDALSLGLLLNCRGIYDIQIFS 331 (711)
Q Consensus 305 ~~~~~~~a~~lgl~l~~kG~~~l~~~~ 331 (711)
.++|++|++.++..++=-......+..
T Consensus 80 l~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred hcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 999999999999888777777766655
No 109
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=83.44 E-value=0.69 Score=47.16 Aligned_cols=125 Identities=19% Similarity=0.272 Sum_probs=78.6
Q ss_pred HHHhhHHHHHHHhcccceec--ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhh
Q 046591 254 VWSVFLPCFLINSGKGVNLF--STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFS 331 (711)
Q Consensus 254 ~~~~~~PlFF~~~G~~~d~~--l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~ 331 (711)
.++++=++.|.-+|..+|+. +.++.+.++.. .+-++ +..+++.+...|+..+|+..+|.+=..-|-.++.+.+
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPktllLGa----AAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~ 156 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPKTLLLGA----AAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTN 156 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcHHHHhhh----HHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecc
Confidence 46788889999999999998 67765554322 12222 2334555677789999999999987888877766654
Q ss_pred hccccCCCCchhhHHHHH-----HHHHHHHhHHHHHHHhhccchhhhh-hccccccccCCcccceeEEEE
Q 046591 332 RSNRRKMLSDESYGVMVM-----TAMLKSAIALPLLRVFYDTSRRYVA-YKRRTIQHTRHDAELRILACI 395 (711)
Q Consensus 332 ~~~~~~~i~~~~f~~lvl-----~~ll~t~i~~pl~~~~~~p~~~~~~-~~~r~i~~~~~~~e~rILv~i 395 (711)
. +.++..+...+ ++++ -++-||+.|.+..+++|..+ .|-|++ ....||+.|+
T Consensus 157 ~------LAP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ERkIrM~qlR~V-----sk~EkIlFPi 214 (375)
T COG1883 157 K------LAPELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEERKIRMTQLRTV-----SKREKILFPI 214 (375)
T ss_pred c------cCHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHHHhhhhccccc-----cchhhhhhhH
Confidence 3 33443333322 2222 45678999998766554332 222322 2347888885
No 110
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=83.21 E-value=0.37 Score=52.79 Aligned_cols=112 Identities=15% Similarity=0.221 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCCch--hHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHH
Q 046591 209 IMVVCSYFVSESMGLIGFWGPIILGVITPLIPPMG--SLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEF 285 (711)
Q Consensus 209 ~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~~~--~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ 285 (711)
+..+++..+.+.++++..+|-.++|+++.... +. +.-.+..+.+ ..+.+++.....|.++|.. +.. .+.....
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~~ 81 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRALA 81 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--ccccccc
Confidence 33445555788999999999999999998853 22 1112444555 6777888888899999999 754 2333333
Q ss_pred HHHHHHHhHHHH-HHHHHh---hcCCChhHHHHHHHHhhcchh
Q 046591 286 LIWVATTVKLFA-IIIPSL---YYKMPFMDALSLGLLLNCRGI 324 (711)
Q Consensus 286 ii~~~~~~K~~~-~~l~~~---~~~~~~~~a~~lgl~l~~kG~ 324 (711)
..+..++.-+.. ++.... ..|+++.+++.+|..+++-..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~ 124 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSP 124 (380)
T ss_dssp --------------------------------TTHHHHTT--H
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccc
Confidence 333333334444 444432 478899999999988776543
No 111
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=83.03 E-value=55 Score=32.96 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=50.7
Q ss_pred EEEEEEEEccCC-ChhHHHHHhhhhcCccEEEecccc-CCchhHHHHHHHHhhcCCcceEEEecc
Q 046591 472 SLQCFTATAPYD-SMHEDICSMTFEKCTSLVIIPFQK-TNSYVIKKITKKVLKMAPCSVGILFDR 534 (711)
Q Consensus 472 ~v~~~~~vs~~~-~~~~~I~~~A~e~~~dlIimg~h~-~~~~~~gs~~~~Vl~~ApC~V~ilvdr 534 (711)
....+|.++|.+ ...++|.+.+.+-++|.|++|-.- -+......+.+++-++...||.++...
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 356788899988 899999999999999999999533 224456778888888999999888543
No 112
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=81.12 E-value=6.1 Score=41.79 Aligned_cols=42 Identities=10% Similarity=0.010 Sum_probs=34.0
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCC
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHA 591 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~ 591 (711)
.++++.|.||+|+--.|.+|.+.....+..+.++++.+...+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~F 69 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKF 69 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCC
Confidence 479999999999999999998876544667889988776544
No 113
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=80.52 E-value=90 Score=33.75 Aligned_cols=287 Identities=10% Similarity=0.077 Sum_probs=135.2
Q ss_pred ccCccchHHHHHHHHHHHHHHHHHHhh------ccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Q 046591 22 IFTPKTQLVISVFESFGLIYITFVTSV------RADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELG 95 (711)
Q Consensus 22 lf~~~~~~~l~~la~~Gl~~~lF~~Gl------e~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~ 95 (711)
++|++..+....+-+=+=.+.+|.+++ .||-+.+-|..++-+..-+.+++...+.|.+++..++.......-..
T Consensus 94 llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~~m~~ 173 (438)
T COG3493 94 LLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQDTMMYV 173 (438)
T ss_pred cCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHHeeeeE
Confidence 345444443333333333456666654 67788888888877777777777777777777777765432110000
Q ss_pred hHHHHHHHHhhh--ccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhhcc---cc-Cc-----ch--
Q 046591 96 ESVQMVTGLEST--ISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQ---EA-GI-----GS-- 162 (711)
Q Consensus 96 ~~~~~l~~~~s~--Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~---~~-~~-----~~-- 162 (711)
.. ..++--... +...-++.- -.+..+.+.=..++.+..+..+++++.-+++--+..-. ++ |. +.
T Consensus 174 vl-PIM~GG~GaGavPLS~iYs~--itg~s~~~~~s~lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~ 250 (438)
T COG3493 174 VL-PIMGGGMGAGAVPLSEIYSS--ITGGSQEEYFSQLIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEA 250 (438)
T ss_pred Ee-eeccCCCCCCcccHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccch
Confidence 00 111111111 111122221 12333445555677778888888887766554332210 00 00 00
Q ss_pred --------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 046591 163 --------INL-LNLMSFMLIVIFIVFIIRPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILG 233 (711)
Q Consensus 163 --------~~~-~~~~~~i~~~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~G 233 (711)
... ......-......+|....++..+.. .|. .+...+ +.+++-...++
T Consensus 251 ~~ee~~~~~k~d~~~~g~G~llA~~lf~~g~il~kf~~-~P~------~va~MI-----il~a~lk~~nl---------- 308 (438)
T COG3493 251 TEEELEKEGKLDLKLMGAGMLLACTLFMAGGILGKFIG-LPG------PVAFMI-----ILVAILKAANL---------- 308 (438)
T ss_pred hhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHhhc-CCc------hHHHHH-----HHHHHHHHhCc----------
Confidence 001 01111111222333443434333332 231 121111 11222222111
Q ss_pred hhcCCCCCchhHHHHHHHH-HHHHhhHHHHHHHhccc-ceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChh
Q 046591 234 VITPLIPPMGSLLTDKMEA-FVWSVFLPCFLINSGKG-VNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFM 310 (711)
Q Consensus 234 l~l~~~~~~~~~l~~~l~~-~~~~~~~PlFF~~~G~~-~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~ 310 (711)
+|+. -++=..++.. +.+.+.-|+.+ .+|.. +|+. +.+.-+|.. +++.+...++-..+.++.+|+.|+-+-
T Consensus 309 --vp~~---i~~GA~~l~~F~sk~~t~~Lm~-giGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPV 381 (438)
T COG3493 309 --VPKE---IEEGAKQLSQFFSKNLTWPLMA-GIGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPV 381 (438)
T ss_pred --CCHH---HHHHHHHHHHHHHHhhHHHHHH-hhhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 2322 1111223332 23344445444 45665 7887 544335543 334444556778888899999987555
Q ss_pred H-HHHHHHHhhcchh-HHHHHhhhccccCCCC
Q 046591 311 D-ALSLGLLLNCRGI-YDIQIFSRSNRRKMLS 340 (711)
Q Consensus 311 ~-a~~lgl~l~~kG~-~~l~~~~~~~~~~~i~ 340 (711)
| ++.-|+.|+.+|. -|+++.+.+-+.++++
T Consensus 382 EaAI~aglC~a~~GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 382 EAAITAGLCMANMGGTGDVAVLSAADRMELMP 413 (438)
T ss_pred HHHHHHhHHhcCCCCCCchHHhhhcchhcccc
Confidence 5 5556688888754 4577766665555543
No 114
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=80.50 E-value=52 Score=33.17 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhH
Q 046591 279 GFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIA 358 (711)
Q Consensus 279 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~ 358 (711)
.|..++.-+.+..+.-+..+++.++.+|.+. .+.. .+.+|....=+...+..+.|-..+-+-...+++-++-+.++
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGP--EIIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566677778888888873 3333 46899999888888887777655445555566666667777
Q ss_pred HHHHHHh
Q 046591 359 LPLLRVF 365 (711)
Q Consensus 359 ~pl~~~~ 365 (711)
+++++++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 8888875
No 115
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=78.97 E-value=11 Score=36.43 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=32.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEeeecC
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQ--NAMLTIIRFFAVN 589 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~--~~~ltvl~v~~~~ 589 (711)
||++.+.||.|+--.+.++.+..++. +.+++.+++....
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~ 41 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGI 41 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCC
Confidence 58999999999999999998887655 7788889887643
No 116
>PRK03818 putative transporter; Validated
Probab=78.78 E-value=28 Score=40.18 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChhH---HHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHH
Q 046591 28 QLVISVFESFGLIYITFVTSVRADLSI---MTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGL 104 (711)
Q Consensus 28 ~~~l~~la~~Gl~~~lF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~ 104 (711)
......+.++|+.+|+|.+|++.-++- +++.+.+...+++.-.++|.++++++.+++. .. ... ..=..+
T Consensus 56 ~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~-~~G~~a 127 (552)
T PRK03818 56 SDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFG-IP------LPV-MLGIFS 127 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC-CC------HHH-HHHHhh
Confidence 456677999999999999999988865 4566666777777777777777666654443 21 111 222344
Q ss_pred hhhccHHHHHHHHHhh
Q 046591 105 ESTISFYGILEILTDM 120 (711)
Q Consensus 105 ~s~Ts~~vv~~iL~el 120 (711)
-+.|+.|.+....+..
T Consensus 128 Ga~T~tp~l~aa~~~~ 143 (552)
T PRK03818 128 GAVTNTPALGAGQQIL 143 (552)
T ss_pred ccccccHHHHHHHHHH
Confidence 5668888887765433
No 117
>PRK10711 hypothetical protein; Provisional
Probab=78.77 E-value=46 Score=33.68 Aligned_cols=83 Identities=7% Similarity=0.073 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhH
Q 046591 279 GFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIA 358 (711)
Q Consensus 279 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~ 358 (711)
.|..+++-+.+..+.-+..+++.++++|.+.. +. ..|.+|....=+...+..+.|-+.+-+-...+++-++-..++
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~~--~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPE--IA--ASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 45455555566666677778888888888654 23 346899999888888888887765555555566666667778
Q ss_pred HHHHHHh
Q 046591 359 LPLLRVF 365 (711)
Q Consensus 359 ~pl~~~~ 365 (711)
|+++|++
T Consensus 163 ~~llk~~ 169 (231)
T PRK10711 163 HTLLNAM 169 (231)
T ss_pred HHHHHHc
Confidence 8888875
No 118
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=78.07 E-value=1.2e+02 Score=33.61 Aligned_cols=113 Identities=10% Similarity=-0.056 Sum_probs=66.7
Q ss_pred HHhhHHHHHHHhcccceec-ccCchh-hHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHH-H-hhcchhHHHHHh
Q 046591 255 WSVFLPCFLINSGKGVNLF-STTLTG-FLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGL-L-LNCRGIYDIQIF 330 (711)
Q Consensus 255 ~~~~~PlFF~~~G~~~d~~-l~~~~~-~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl-~-l~~kG~~~l~~~ 330 (711)
.++|+-+||..+|+..++. +..... ......+..+......+.....+..+|+++.-++..|- . -...|... +..
T Consensus 66 ~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAa-A~g 144 (398)
T TIGR00210 66 RDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGA-AWS 144 (398)
T ss_pred HHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHH-HHH
Confidence 3678889999999999998 654211 22223333345566666666777888999987776432 1 22333333 222
Q ss_pred hhccc-cCCCCchhhH--HHHHHHHHHHHhHHHHHHHhhcc
Q 046591 331 SRSNR-RKMLSDESYG--VMVMTAMLKSAIALPLLRVFYDT 368 (711)
Q Consensus 331 ~~~~~-~~~i~~~~f~--~lvl~~ll~t~i~~pl~~~~~~p 368 (711)
....+ .|+-+..... .-.+..+..++++.|+.+++.|+
T Consensus 145 ~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk 185 (398)
T TIGR00210 145 PVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIR 185 (398)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 32223 4654444333 23344555667789999997643
No 119
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=77.33 E-value=43 Score=35.64 Aligned_cols=112 Identities=14% Similarity=0.091 Sum_probs=65.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHhhccCCCCCchhhHHHHHH
Q 046591 24 TPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYL-LPLIVTSLSTVIVNQFDPLDGELGESVQMVT 102 (711)
Q Consensus 24 ~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~-~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~ 102 (711)
|..-.+.++.+++...-+-||..|+.++.+.+++..+........-.+ .|.+. ++++..+.. + ... .-..
T Consensus 202 P~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~-~~~~~~~~l----~---~~~-~~~~ 272 (321)
T TIGR00946 202 PGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVM-AGISKLIGL----R---GLE-LSVA 272 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHH-HHHHHHhCC----C---hHH-HHHH
Confidence 444478899999999999999999999998887766666555555554 44443 444444321 1 112 3334
Q ss_pred HHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHH
Q 046591 103 GLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGT 147 (711)
Q Consensus 103 ~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~ 147 (711)
...+....++...++.+.--.+. +.+-+.-.++-+++.+.+.
T Consensus 273 vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 273 ILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 45555555566666654322232 3444444455555544443
No 120
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=77.29 E-value=11 Score=39.55 Aligned_cols=111 Identities=15% Similarity=0.201 Sum_probs=67.8
Q ss_pred HHHHHhhHHHHHHHhcccceec--ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCC------ChhHHHHHHHHhhcch
Q 046591 252 AFVWSVFLPCFLINSGKGVNLF--STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKM------PFMDALSLGLLLNCRG 323 (711)
Q Consensus 252 ~~~~~~~~PlFF~~~G~~~d~~--l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~~~a~~lgl~l~~kG 323 (711)
.+.++++=|+-|.-+|.-+|+. +.++.... +-..+-++ +..+++.+.+.|+ +.+|+-.+|.+=..-|
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP~~~l----lGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADG 133 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANPRTLL----LGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADG 133 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhChHHHH----HHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCC
Confidence 3457899999999999999998 66653322 22222222 2334455566677 6799999998888888
Q ss_pred hHHHHHhhhcccc--CCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchh
Q 046591 324 IYDIQIFSRSNRR--KMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRR 371 (711)
Q Consensus 324 ~~~l~~~~~~~~~--~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~ 371 (711)
-.++.+.+.-... +-|.-..|+-| ++ .=.+-||++|.+..+++|
T Consensus 134 Pt~If~s~~lap~Llg~IaVAAYsYM---aL-vPiiqPpimklLttkkeR 179 (354)
T TIGR01109 134 PTAIYLSGKLAPELLAAIAVAAYSYM---AL-VPIIQPPIMKALTSEKER 179 (354)
T ss_pred chhhhhHhhhhhHHHHHHHHHHHHHH---HH-HhcccchHHHhhcChHHh
Confidence 8887776532110 11222233332 22 244578999987644433
No 121
>COG2985 Predicted permease [General function prediction only]
Probab=77.01 E-value=4.5 Score=44.68 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhccChhH---HHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHH-HHhhhccHH
Q 046591 36 SFGLIYITFVTSVRADLSI---MTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVT-GLESTISFY 111 (711)
Q Consensus 36 ~~Gl~~~lF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~-~~~s~Ts~~ 111 (711)
++|+++|.+.+|+|--+.. ++|.+++-..+++.- ++.+..+++++.+....+ .. +..| .+-+.||.|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~~~----~~-~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFGID----LG-LIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcCCC----HH-HhhhhhcccccCCc
Confidence 9999999999999988754 677888877666553 334444555555554322 12 1112 233456666
Q ss_pred HHHH---HHHhhccccChhHHH--HHHHHHHHhHHHHHHHHHH
Q 046591 112 GILE---ILTDMKLLNSELGRL--ALSSSLTNTLLNMTLGTVL 149 (711)
Q Consensus 112 vv~~---iL~el~l~~s~~G~l--als~a~i~D~~~~~ll~~~ 149 (711)
.+.. +|+|++....-.-+. .-|.+-.--++++++.+-.
T Consensus 133 ~L~aa~~~L~~lg~~~~~~~~~~~gYamaYp~Gil~ii~~~~l 175 (544)
T COG2985 133 GLGAAQDILRELGAPSQALDQMGMGYALAYPIGILGIILGAWL 175 (544)
T ss_pred hhHHHHHHHHhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 6554 566666531112222 2333444445555554433
No 122
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=75.92 E-value=12 Score=38.87 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCCC-ch--hHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchh
Q 046591 204 VIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIPP-MG--SLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTG 279 (711)
Q Consensus 204 ~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~~-~~--~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~ 279 (711)
...-+.++|+.+.+++.+.++|.+|=.++|.+.....| +- ..+...+-.++ .-+....+|+++.+. +-.-+.
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 44557788899999999999999999999999975432 22 34555565553 223445778888887 443334
Q ss_pred hHH--HHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHH
Q 046591 280 FLI--VEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDI 327 (711)
Q Consensus 280 ~~~--~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l 327 (711)
|.. .+.-+.+++ .. .+..++..|+++...+..|+.++.-+.+-+
T Consensus 87 iAipgAl~qia~at---~l-g~gL~~~lgws~~~glvfGlaLS~aSTVvl 132 (408)
T COG4651 87 IAIPGALAQIALAT---LL-GMGLSSLLGWSFGTGIVFGLALSVASTVVL 132 (408)
T ss_pred HhcchHHHHHHHHH---HH-HhHHHHHcCCCcccceeeeehhhhHHHHHH
Confidence 421 111111111 11 223356678888888888888887776644
No 123
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=75.56 E-value=1.4e+02 Score=33.10 Aligned_cols=139 Identities=17% Similarity=0.120 Sum_probs=73.6
Q ss_pred hchhhHHHHHHHhhcCCCCCch--hHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHH-HH
Q 046591 222 GLIGFWGPIILGVITPLIPPMG--SLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKL-FA 297 (711)
Q Consensus 222 g~~~~lGaf~~Gl~l~~~~~~~--~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~-~~ 297 (711)
.+....+|++.|+++.+.-+.. .++.++.-+...++.+-+|.+..=|.++++ +.+ .+...+++.++.++.-. ..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999998742211 112222333346677778888888889998 765 44444444444444333 44
Q ss_pred HHHHHhhcCCChhHHHHHHHHhh--cchhHHHHHhhh---ccccCCCCchhhHHH-HHHHHHHHHhHHHHHHH
Q 046591 298 IIIPSLYYKMPFMDALSLGLLLN--CRGIYDIQIFSR---SNRRKMLSDESYGVM-VMTAMLKSAIALPLLRV 364 (711)
Q Consensus 298 ~~l~~~~~~~~~~~a~~lgl~l~--~kG~~~l~~~~~---~~~~~~i~~~~f~~l-vl~~ll~t~i~~pl~~~ 364 (711)
.++..+..|-+ .|+-.+..... .-|...-.++++ -.++|. ++..|-++ +..+.+.=+.-++++..
T Consensus 322 ~fv~fr~mg~~-ydaaV~~ag~~G~~lGatptaianm~av~~~yg~-s~~af~ivPlvgaf~id~~n~~~i~~ 392 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP-SHQAFIVVPLVGAFFIDIINALVIKQ 392 (398)
T ss_pred HHHhHHhccch-HHHHHHhcccccccccchHHHHHHHHHHHhccCC-CCcceehhhhHHHHHHHHhhHHHHHH
Confidence 45556667766 67655333322 223344344433 233444 34443332 33444444444444443
No 124
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=75.43 E-value=49 Score=35.56 Aligned_cols=125 Identities=13% Similarity=0.103 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhchh--hHH-HHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCch
Q 046591 203 HVIALNIMVVCSYFVSESMGLIG--FWG-PIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLT 278 (711)
Q Consensus 203 ~~~~il~~~l~~~~~~~~~g~~~--~lG-af~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~ 278 (711)
+....+.+.+..+++.+..|+.. ++| +.++|.+..-.. ..-.+-..+...+. -+--..+|.++..+ +....
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~-~~l~~P~~l~~~~q----~ilG~~ig~~~t~s~l~~l~ 84 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRG-LTLPLPRGLFKAGQ----VILGIMIGASLTPSVLDTLK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc-ccccCChHHHHHHH----HHHHHHHhhhcCHHHHHHHH
Confidence 34555666667888888888854 578 666666654321 11112223333322 23445677777776 54333
Q ss_pred -hhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccC
Q 046591 279 -GFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRK 337 (711)
Q Consensus 279 -~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~ 337 (711)
.|..+.++.+..+..-++..++..++.+.|..+++ +...|-|..++.... .|.|
T Consensus 85 ~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~iA--~d~g 139 (352)
T COG3180 85 SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSIA--QDYG 139 (352)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHHH--HHhC
Confidence 47777777777778888888888888888877775 446888888876654 4444
No 125
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=75.41 E-value=9.9 Score=40.01 Aligned_cols=42 Identities=7% Similarity=-0.036 Sum_probs=33.8
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCC
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHA 591 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~ 591 (711)
.+.++.|.||+|+--.|.++.+.....+..+.++++.+.-.+
T Consensus 20 ~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F 61 (294)
T TIGR02039 20 ERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF 61 (294)
T ss_pred CCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC
Confidence 356789999999999999999886544667899999876544
No 126
>COG3329 Predicted permease [General function prediction only]
Probab=74.90 E-value=61 Score=33.91 Aligned_cols=122 Identities=12% Similarity=0.013 Sum_probs=72.0
Q ss_pred chhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHH
Q 046591 223 LIGFWGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIP 301 (711)
Q Consensus 223 ~~~~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 301 (711)
++|.+.-|+.|++.+-... .-++-+.+-...+-.++-..-..-|+.+.-+ ++. ....++.-+.+.++.-++..++.
T Consensus 16 ~sP~llFf~~Gmlia~~ks-dl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~f~l 92 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKS-DLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAYFLL 92 (372)
T ss_pred ccchHHHHHHHHHHHHHhc-cccCchHHHHHHHHHHHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888765320 0112222222112222222222334444444 543 34445555566666677888888
Q ss_pred HhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCchhhHHH
Q 046591 302 SLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVM 347 (711)
Q Consensus 302 ~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~l 347 (711)
.++.+++..|+...+-.-+..+.+..+.+..-++.--+..+.|...
T Consensus 93 ~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 93 RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 8888999999999998777777777777666565555555555433
No 127
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=74.51 E-value=19 Score=39.31 Aligned_cols=131 Identities=14% Similarity=0.224 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccce-ec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhc
Q 046591 228 GPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVN-LF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYY 305 (711)
Q Consensus 228 Gaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d-~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~ 305 (711)
...++|....+..-+..+-.+.+..++..+++|.+....=.+.+ .. +.+ ++.+.+...+..+.=++..++..+++
T Consensus 11 ~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (385)
T PF03547_consen 11 LIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS---LWFIPVFAFIIFILGLLLGFLLSRLF 87 (385)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455655655444566777888889999999998776544433 33 432 33333333333333445556666666
Q ss_pred CCChhHH--HHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhh
Q 046591 306 KMPFMDA--LSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFY 366 (711)
Q Consensus 306 ~~~~~~a--~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~ 366 (711)
+.+.++. ..++...+.-|.+.+-+..... +++.....++..++..++.-++...+.
T Consensus 88 ~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~-----g~~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 88 RLPKEWRGVFVLAASFGNTGFLGLPILQALF-----GERGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred CCCcccceEEEecccCCcchhhHHHHHHHHh-----cchhhhhehHHHHhhHHHHHHHHHHhh
Confidence 6665553 3334344555666655544332 223333333344444444444444433
No 128
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=73.65 E-value=20 Score=41.58 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChhH---HHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHH-H
Q 046591 28 QLVISVFESFGLIYITFVTSVRADLSI---MTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVT-G 103 (711)
Q Consensus 28 ~~~l~~la~~Gl~~~lF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~-~ 103 (711)
......+.++|+.+|++.+|++--++- +++.+.+...+|+.-.++|.++++.+++.+.+.. .. ...| .
T Consensus 443 ~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~G~~ 514 (562)
T TIGR03802 443 SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYD-------PA-LLLGAL 514 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------HH-HHHHHh
Confidence 445677999999999999999987754 5666777777788878888888887775554432 12 3333 4
Q ss_pred HhhhccHHHHHHHHHhh
Q 046591 104 LESTISFYGILEILTDM 120 (711)
Q Consensus 104 ~~s~Ts~~vv~~iL~el 120 (711)
+-+.|++|.+....+..
T Consensus 515 aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 515 AGARTATPALGAVLERA 531 (562)
T ss_pred hccCCCcHHHHHHHHhc
Confidence 56778888887765543
No 129
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=72.62 E-value=6.9 Score=43.67 Aligned_cols=78 Identities=15% Similarity=0.319 Sum_probs=53.3
Q ss_pred hhHHHHHhhhhcCccEEEec---ccc---CC---chhHHHHHHHHhhcCCcceEEEeccCCcccc---ccccccCcceeE
Q 046591 485 MHEDICSMTFEKCTSLVIIP---FQK---TN---SYVIKKITKKVLKMAPCSVGILFDRREFMNS---RHIFTHRSAINV 552 (711)
Q Consensus 485 ~~~~I~~~A~e~~~dlIimg---~h~---~~---~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~---~~~~~~~~~~~I 552 (711)
-+++||++|.++++|+|++| ||. |. ...++.+-+.-+..-||..=++-|.+..-++ ..+.-.+...||
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNI 119 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNI 119 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCcce
Confidence 47899999999999999999 666 22 3446666677777889999999887643111 111111234588
Q ss_pred EEeccC--Ccch
Q 046591 553 CVIFLG--GPDD 562 (711)
Q Consensus 553 ~v~f~g--g~dd 562 (711)
.+|.++ |.+|
T Consensus 120 sIPVFsIHGNHD 131 (646)
T KOG2310|consen 120 SIPVFSIHGNHD 131 (646)
T ss_pred eeeeEEeecCCC
Confidence 888876 5554
No 130
>COG2855 Predicted membrane protein [Function unknown]
Probab=71.92 E-value=11 Score=39.96 Aligned_cols=56 Identities=7% Similarity=0.154 Sum_probs=47.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHH
Q 046591 24 TPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSL 79 (711)
Q Consensus 24 ~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~ 79 (711)
|.+..+.+..++.+-+..=|...|++.|++.++|.+.|.+..++.+++.-.+.++.
T Consensus 273 P~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~kpl~la~~~~~~l~~~~l~ 328 (334)
T COG2855 273 PAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAGGKPLLLALLLWVFLVVGGLA 328 (334)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 55667889999999999999999999999999999999998888777655544443
No 131
>PRK12342 hypothetical protein; Provisional
Probab=71.26 E-value=12 Score=38.55 Aligned_cols=86 Identities=10% Similarity=0.044 Sum_probs=51.2
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEeecCchhHH-
Q 046591 554 VIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHSVKEGSETF- 632 (711)
Q Consensus 554 v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~i~- 632 (711)
+++.=.|.|+.|++.|.|+. ..+.++|++.+-++... +.+.+++.-....+ +-+...+... .|.|+.
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a~---------~~~l~r~alamGaD-~avli~d~~~-~g~D~~a 96 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLA-TDGDEIAALTVGGSLLQ---------NSKVRKDVLSRGPH-SLYLVQDAQL-EHALPLD 96 (254)
T ss_pred CCccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChHh---------HHHHHHHHHHcCCC-EEEEEecCcc-CCCCHHH
Confidence 44455799999999999999 56899999998764320 11122332223222 2233333322 233443
Q ss_pred ------HHHHhhcCCccEEEEcccCCC
Q 046591 633 ------HVINSIGNDFELILTGRTHDY 653 (711)
Q Consensus 633 ------~~~~~~~~~~DLiivG~~~~~ 653 (711)
++++.. +||||+-|+....
T Consensus 97 ta~~La~~i~~~--~~DLVl~G~~s~D 121 (254)
T PRK12342 97 TAKALAAAIEKI--GFDLLLFGEGSGD 121 (254)
T ss_pred HHHHHHHHHHHh--CCCEEEEcCCccc
Confidence 234443 6999999988643
No 132
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=68.59 E-value=15 Score=34.91 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEEEee
Q 046591 560 PDDREALAYGARMTGDQNAMLTIIRFF 586 (711)
Q Consensus 560 ~ddreAl~~a~rma~~~~~~ltvl~v~ 586 (711)
+.|+|+++.|+++++..+.+++++-+-
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G 41 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG 41 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe
Confidence 789999999999999999999999876
No 133
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=67.96 E-value=35 Score=35.22 Aligned_cols=109 Identities=14% Similarity=0.022 Sum_probs=59.9
Q ss_pred EeccCCcchHHHHHHHHHHhcCCC-eEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEeecCchhHH
Q 046591 554 VIFLGGPDDREALAYGARMTGDQN-AMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHSVKEGSETF 632 (711)
Q Consensus 554 v~f~gg~ddreAl~~a~rma~~~~-~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~i~ 632 (711)
+.+.=.+.|+.|++.|.|+.++.+ .++|++.+-+++.. +++.+++.-....+. -+...+... .|.|+.
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------~~~~lr~aLAmGaD~-avli~d~~~-~g~D~~ 98 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------NAKGRKDVLSRGPDE-LIVVIDDQF-EQALPQ 98 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------hHHHHHHHHHcCCCE-EEEEecCcc-cCcCHH
Confidence 344456899999999999998765 89999999865421 112233332332222 222222211 233333
Q ss_pred -------HHHHhhcCCccEEEEcccCCCC-C-ccccCCCCCCCCCccchhhh
Q 046591 633 -------HVINSIGNDFELILTGRTHDYC-S-PVLSGLVEWSESQELGVVGD 675 (711)
Q Consensus 633 -------~~~~~~~~~~DLiivG~~~~~~-~-~~~~gl~~w~e~~eLG~igd 675 (711)
+++++. +||||+-|+..-.. + .+-.-+.+|-..|-+..+-+
T Consensus 99 ~tA~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 99 QTASALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 234443 69999999986321 1 11112334444555555544
No 134
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=66.96 E-value=1.5e+02 Score=30.04 Aligned_cols=91 Identities=11% Similarity=0.042 Sum_probs=54.2
Q ss_pred EEEEEccCCChhHHHHHhhhhcCccEEEeccccCCchhHHHHHHHHhhcCCcceEEEeccCCccccccccccCcceeEEE
Q 046591 475 CFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTNSYVIKKITKKVLKMAPCSVGILFDRREFMNSRHIFTHRSAINVCV 554 (711)
Q Consensus 475 ~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~~~~~~~~~~~I~v 554 (711)
.++.++|.+...++..+.+.+.++|.|++|-.- ++...-.+.+.+-+..+.||.++...... . ......+++
T Consensus 10 h~~liDPdK~~~~~~~~~~~~~gtDai~VGGS~-~~~~~d~vv~~ik~~~~lPvilfPg~~~~--v-----s~~aDail~ 81 (230)
T PF01884_consen 10 HATLIDPDKPNPEEALEAACESGTDAIIVGGSD-TGVTLDNVVALIKRVTDLPVILFPGSPSQ--V-----SPGADAILF 81 (230)
T ss_dssp EEEEE-TTSS-HHHHHHHHHCTT-SEEEEE-ST-HCHHHHHHHHHHHHHSSS-EEEETSTCCG---------TTSSEEEE
T ss_pred eEEEECCCCCCcHHHHHHHHhcCCCEEEECCCC-CccchHHHHHHHHhcCCCCEEEeCCChhh--c-----CcCCCEEEE
Confidence 567889999999999999999999999999633 13334455555555589998887332211 1 112345666
Q ss_pred eccCCcch--------HHHHHHHHHHh
Q 046591 555 IFLGGPDD--------REALAYGARMT 573 (711)
Q Consensus 555 ~f~gg~dd--------reAl~~a~rma 573 (711)
|..=..++ .+|....+++-
T Consensus 82 ~svlNs~n~~~iig~~~~aa~~~~~~~ 108 (230)
T PF01884_consen 82 PSVLNSRNPYWIIGAQVEAAPLIKKLG 108 (230)
T ss_dssp EEETTBSSTTTTTHHHHHHHHHCHHHH
T ss_pred EEEecCCCcchHhhHHHHHHHHHHhhc
Confidence 55443322 56666666666
No 135
>PRK04972 putative transporter; Provisional
Probab=66.72 E-value=13 Score=43.06 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChhH---HHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHH
Q 046591 28 QLVISVFESFGLIYITFVTSVRADLSI---MTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGL 104 (711)
Q Consensus 28 ~~~l~~la~~Gl~~~lF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~ 104 (711)
.....++.++|+.+|+..+|+.--.+- +++.+.+.+.++....++|.++++.+++++.+.. ... ..=+.+
T Consensus 438 ~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~------~~~-~~G~~a 510 (558)
T PRK04972 438 QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMN------RAL-LFGAIM 510 (558)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------HHH-HHHHHh
Confidence 456788999999999999999866544 5566777778888888889888888887766543 122 333355
Q ss_pred hhhccHHHHHHHHHhh
Q 046591 105 ESTISFYGILEILTDM 120 (711)
Q Consensus 105 ~s~Ts~~vv~~iL~el 120 (711)
-+.|++|.+....+..
T Consensus 511 G~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 511 GARTCAPAMEIISDTA 526 (558)
T ss_pred CCCCCcHHHHHHHhhc
Confidence 6778888887655443
No 136
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=66.18 E-value=40 Score=35.35 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=33.5
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV 588 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~ 588 (711)
++|++.+.||+|+--.+.+.+++.++ .++.+++|...
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 58999999999999999999999887 89999999865
No 137
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=64.60 E-value=17 Score=38.51 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=35.1
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCc
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATK 593 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~ 593 (711)
.++++.|.||+|+--.|.+|.+.....+..+.++++.+...+.+
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpE 81 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFRE 81 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHH
Confidence 46789999999999999999988755556788999877665533
No 138
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=62.38 E-value=71 Score=33.77 Aligned_cols=49 Identities=16% Similarity=0.359 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 046591 36 SFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIV 84 (711)
Q Consensus 36 ~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l 84 (711)
.+++.++.|..|.++|++.+.+.+.+.+.+++..+.+.+..++.+..++
T Consensus 195 ~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rll 243 (312)
T PRK12460 195 PLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLV 243 (312)
T ss_pred eEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4488899999999999999999999999999999988888888888776
No 139
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=61.08 E-value=23 Score=33.51 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=55.8
Q ss_pred hhhHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHhhHHHHHHHhcccceec----ccCchhhHHHHHHHHHHHHhHHH
Q 046591 224 IGFWGPIILGVITPLIP---PMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF----STTLTGFLIVEFLIWVATTVKLF 296 (711)
Q Consensus 224 ~~~lGaf~~Gl~l~~~~---~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~----l~~~~~~~~~~~ii~~~~~~K~~ 296 (711)
-..-|+++.|+++.+.. |....+......+..++-+-+|...+|++.-.. +.....+....+..++.++.-.+
T Consensus 22 G~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~ 101 (154)
T TIGR01625 22 GNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLL 101 (154)
T ss_pred cccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 33457888888877643 233344445555667888889999999998765 33321122233333344444456
Q ss_pred HHHHHHhhcCCChhHHHHHHHH
Q 046591 297 AIIIPSLYYKMPFMDALSLGLL 318 (711)
Q Consensus 297 ~~~l~~~~~~~~~~~a~~lgl~ 318 (711)
..++..+++|+++-. ..|.+
T Consensus 102 ~~~~~~~~~~~~~~~--~~G~~ 121 (154)
T TIGR01625 102 VAVALIKLLRINYAL--TAGML 121 (154)
T ss_pred HHHHHHHHhCCCHHH--HHHHH
Confidence 666666788998754 44443
No 140
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=60.38 E-value=35 Score=39.61 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=52.9
Q ss_pred hhhHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCc--hhhHHHHHHHHHHHHhHHHH
Q 046591 224 IGFWGPIILGVITPLIP---PMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTL--TGFLIVEFLIWVATTVKLFA 297 (711)
Q Consensus 224 ~~~lGaf~~Gl~l~~~~---~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~--~~~~~~~~ii~~~~~~K~~~ 297 (711)
....|+++.|+++.+.. |....+-+....+..++.+-+|...+|++.-.. +... ..|...++-+++.++ =.+.
T Consensus 416 g~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~-~~~~ 494 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTIL-PLII 494 (562)
T ss_pred hhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH-HHHH
Confidence 34568999999887742 222234444444456777888989999888765 3221 133322222222323 3344
Q ss_pred HHHHH-hhcCCChhHHHHHHHHhhcc
Q 046591 298 IIIPS-LYYKMPFMDALSLGLLLNCR 322 (711)
Q Consensus 298 ~~l~~-~~~~~~~~~a~~lgl~l~~k 322 (711)
+++.+ +++|+++-. .+|.+-...
T Consensus 495 ~~~~~~~~~~~~~~~--~~G~~aG~~ 518 (562)
T TIGR03802 495 TMLIGKYVLKYDPAL--LLGALAGAR 518 (562)
T ss_pred HHHHHHHHhCCCHHH--HHHHhhccC
Confidence 44444 678887654 445443333
No 141
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=59.68 E-value=50 Score=36.99 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=41.2
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHh-cCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhc
Q 046591 549 AINVCVIFLGGPDDREALAYGARMT-GDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMS 611 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma-~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~ 611 (711)
..+|++.+.||+|+.--+.+..++. ..++.+++++||+..-..+ .+.+.++++++..+
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~-----s~~~~~~~~~~~~~ 73 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPN-----ADSWVKHCEQVCQQ 73 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcc-----hHHHHHHHHHHHHH
Confidence 3589999999999988888887776 4567899999998543211 22334566666554
No 142
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=59.62 E-value=2e+02 Score=28.89 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhH
Q 046591 279 GFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIA 358 (711)
Q Consensus 279 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~ 358 (711)
.|..++.-+.+..+.-+..+++.++++|.+.. +.. .+.+|....=+...+..+.|-...-+-...+++-++-..+.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~--Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IIL--SLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 45555555566666677777788888888654 333 36899998888778877777765555555566666667778
Q ss_pred HHHHHHh
Q 046591 359 LPLLRVF 365 (711)
Q Consensus 359 ~pl~~~~ 365 (711)
|++++++
T Consensus 152 ~~llk~~ 158 (215)
T PF04172_consen 152 PPLLKLL 158 (215)
T ss_pred HHHHhHc
Confidence 8888874
No 143
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=59.31 E-value=83 Score=34.79 Aligned_cols=110 Identities=11% Similarity=0.147 Sum_probs=61.6
Q ss_pred HHHHHHhhchhhHHHHHHHhhcCCCCCchh-HHH-HHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHH
Q 046591 215 YFVSESMGLIGFWGPIILGVITPLIPPMGS-LLT-DKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVAT 291 (711)
Q Consensus 215 ~~~~~~~g~~~~lGaf~~Gl~l~~~~~~~~-~l~-~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~ 291 (711)
+-++..+|....+=-...|++..... ++. ... ..+..++..+.+.+...-.|++++++ +... .|....+..+...
T Consensus 23 s~~ssrfGvP~LllFl~iGm~aG~dG-lg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a-~~palsLATlGVl 100 (574)
T COG3263 23 SLISSRFGVPLLLLFLSIGMLAGVDG-LGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVA-AGPALSLATLGVL 100 (574)
T ss_pred HHHHHHcCchHHHHHHHHHHHcCCCc-ccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHH-hhhhHHHHHHHHH
Confidence 33444455555554455566555532 110 000 12333344555666666779999987 6532 3333333333333
Q ss_pred HhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHH
Q 046591 292 TVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYD 326 (711)
Q Consensus 292 ~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~ 326 (711)
+.-.+....+.+.++++|-|++.+|.+....-..+
T Consensus 101 ~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAA 135 (574)
T COG3263 101 ITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAA 135 (574)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHH
Confidence 44445555667788999999999998877654444
No 144
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=58.77 E-value=1.9e+02 Score=31.63 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=61.3
Q ss_pred HHHhhHHHHHHHhcccceec-ccC-chhh-HHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhH-HHHH
Q 046591 254 VWSVFLPCFLINSGKGVNLF-STT-LTGF-LIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIY-DIQI 329 (711)
Q Consensus 254 ~~~~~~PlFF~~~G~~~d~~-l~~-~~~~-~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~-~l~~ 329 (711)
..+.|+-+||+++|+.-++. +.. .+.. +.......+...-.+++. ..+.+.|+++.-++..|-+--.-|+- +.+.
T Consensus 67 l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi-~la~~lgidpl~gllagsIsl~GGHGtaAA~ 145 (404)
T COG0786 67 LQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGI-GLAKLLGLDPLIGLLAGSISLVGGHGTAAAW 145 (404)
T ss_pred cccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHH-HHHHHcCccHHHHHHhcceeecCCCchHHHH
Confidence 36788999999999999998 643 2111 222222222333344444 44566788776666664432233332 2344
Q ss_pred hhhccccCCCCchhhH--HHHHHHHHHHHhHHHHHHHhhcc
Q 046591 330 FSRSNRRKMLSDESYG--VMVMTAMLKSAIALPLLRVFYDT 368 (711)
Q Consensus 330 ~~~~~~~~~i~~~~f~--~lvl~~ll~t~i~~pl~~~~~~p 368 (711)
.....+.|.=+..... ...+..+.-.+++.|+.||+.|+
T Consensus 146 ~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k 186 (404)
T COG0786 146 GPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKK 186 (404)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHh
Confidence 5555566543322221 12223333345678999998754
No 145
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=56.72 E-value=61 Score=37.55 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHh---------hcCCChhHHHHHHHHhhcchh
Q 046591 255 WSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSL---------YYKMPFMDALSLGLLLNCRGI 324 (711)
Q Consensus 255 ~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~---------~~~~~~~~a~~lgl~l~~kG~ 324 (711)
..+++|.-....|+.++.. +.. .+..++.+.++.++.-.+.+-...+ ..++|+.+++.+|.++++..-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 4567888888889999998 653 3433333333222222222211111 125699999999999999988
Q ss_pred HHHHH
Q 046591 325 YDIQI 329 (711)
Q Consensus 325 ~~l~~ 329 (711)
+....
T Consensus 147 VAVla 151 (559)
T TIGR00840 147 VAVLA 151 (559)
T ss_pred HHHHH
Confidence 87654
No 146
>PRK09903 putative transporter YfdV; Provisional
Probab=55.13 E-value=1.9e+02 Score=30.66 Aligned_cols=87 Identities=10% Similarity=-0.012 Sum_probs=50.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCchhhHHHHHH
Q 046591 24 TPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSY-LLPLIVTSLSTVIVNQFDPLDGELGESVQMVT 102 (711)
Q Consensus 24 ~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~-~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~ 102 (711)
|+.-.+.++.+++...-+-||..|..+....++.. ++.+...+.-. +.|++. ++...++ .. + ... .-..
T Consensus 193 P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~P~i~-~~~~~~~-~l---~---~~~-~~v~ 262 (314)
T PRK09903 193 PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILMPLAL-LLVGMAC-HL---N---SEH-LQMM 262 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHH-HHHHHHc-CC---C---cHH-HHHH
Confidence 44457889999999999999999999877655433 33333333333 355543 3333232 11 1 122 3445
Q ss_pred HHhhhccHHHHHHHHHhh
Q 046591 103 GLESTISFYGILEILTDM 120 (711)
Q Consensus 103 ~~~s~Ts~~vv~~iL~el 120 (711)
..++....++.+.++.+.
T Consensus 263 vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 263 VLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHcccHHHHHHHHHHH
Confidence 555666566666666543
No 147
>PRK03818 putative transporter; Validated
Probab=55.00 E-value=1.9e+02 Score=33.51 Aligned_cols=82 Identities=10% Similarity=0.088 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChhHHH---h-cchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHH-
Q 046591 28 QLVISVFESFGLIYITFVTSVRADLSIMT---K-SGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVT- 102 (711)
Q Consensus 28 ~~~l~~la~~Gl~~~lF~~Gle~d~~~l~---~-~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~- 102 (711)
......+.++|+.+|+..+|++--.+-+. + .+.+...+|..-.++|.++++.+++++.+.. .. ...|
T Consensus 428 ~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~-------~~-~~~G~ 499 (552)
T PRK03818 428 PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMN-------YL-TLCGM 499 (552)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HH-HHHHH
Confidence 45577888999999999999987776543 3 4566677888888888888888876665542 12 3333
Q ss_pred HHhhhccHHHHHHHH
Q 046591 103 GLESTISFYGILEIL 117 (711)
Q Consensus 103 ~~~s~Ts~~vv~~iL 117 (711)
.+-+.|++|.+....
T Consensus 500 ~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 500 LAGSMTDPPALAFAN 514 (552)
T ss_pred HhccCCCcHHHHHHh
Confidence 456778888886553
No 148
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=53.60 E-value=1e+02 Score=32.98 Aligned_cols=132 Identities=11% Similarity=0.105 Sum_probs=75.8
Q ss_pred hHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCch-hhHHHHHHHHHHHHhHHHHHHHHHh
Q 046591 226 FWGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLT-GFLIVEFLIWVATTVKLFAIIIPSL 303 (711)
Q Consensus 226 ~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~ 303 (711)
.+||.+++.+.....+..-....++... ...+--+.+|.+++.. +.... .|...++..+...+.-.+..++..|
T Consensus 2 llG~~ia~~~~~~~~~~~~~~p~~~r~~----~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r 77 (318)
T PF05145_consen 2 LLGPMIAVIIAALFGPLPLRVPRRLRNA----GQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRR 77 (318)
T ss_pred chHHHHHHHHHHHhCCCccCCCHHHHHH----HHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567766666654433333333344333 2345567889999887 55433 3444555666666677788888889
Q ss_pred hcCCChhHHHHHHHHhhcchhHHHHHhhhccccCCCCchhhHHH-HHHHHHHHHhHHHHHHHhhc
Q 046591 304 YYKMPFMDALSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVM-VMTAMLKSAIALPLLRVFYD 367 (711)
Q Consensus 304 ~~~~~~~~a~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~l-vl~~ll~t~i~~pl~~~~~~ 367 (711)
+.+++..+++.- ..|-|..+++... .|.|- |...-+.+ .+=+++.....|+++.+..+
T Consensus 78 ~~~~d~~TA~~~---~~PGg~s~m~~la--~~~ga-d~~~Va~~q~lRl~~Vv~~vP~i~~~~~~ 136 (318)
T PF05145_consen 78 ISGLDRATAFFA---SMPGGLSEMVALA--EEYGA-DTRRVALVQSLRLLLVVLLVPFIASLLGG 136 (318)
T ss_pred HcCCChhHHHHH---cCCccHHHHHHHH--HHcCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999988888643 5788888877655 34442 22221111 11111123346777777654
No 149
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=53.51 E-value=15 Score=40.57 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhccCCCCCeEEEEEeecCc--hhHHHHHHhhcC--CccEEEEcccCC
Q 046591 600 NDLNLISGLRMSTMDSKNVRYIKHSVKEG--SETFHVINSIGN--DFELILTGRTHD 652 (711)
Q Consensus 600 ~d~~~l~~~~~~~~~~~~v~y~e~~v~~g--~~i~~~~~~~~~--~~DLiivG~~~~ 652 (711)
...+.++..+.+....+.+.|...+=+++ .||++.|+..+. ++|.+||||+||
T Consensus 148 airDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 148 ALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred HHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 44456777776654445566755554454 589999888764 499999999997
No 150
>COG0679 Predicted permeases [General function prediction only]
Probab=53.03 E-value=2.3e+02 Score=30.10 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHh
Q 046591 225 GFWGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSL 303 (711)
Q Consensus 225 ~~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 303 (711)
+++.-...|..+.+......+-.+-+++++..+.+|.-+...=.+.+.+ . ..+.......+..++.=+...++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL---ADLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCChhHH--HHHHHHhhcchhHHHHHhhhccccCCCCchhhHHHHHHHHHHHHhHHHHHHHhhccchh
Q 046591 304 YYKMPFMDA--LSLGLLLNCRGIYDIQIFSRSNRRKMLSDESYGVMVMTAMLKSAIALPLLRVFYDTSRR 371 (711)
Q Consensus 304 ~~~~~~~~a--~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~ 371 (711)
..+.+.++. ...+...+.-|-+.+-++.... +++.....++...+.+....-+.-+.....++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~-----G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~ 152 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVALSLF-----GEKGLAYAVIFLIIGLFLMFTLGVILLARSGG 152 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHHHHHc-----CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 151
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=48.79 E-value=20 Score=37.87 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=33.4
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCe-EEEEEEee
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNA-MLTIIRFF 586 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~-~ltvl~v~ 586 (711)
+.+|+|-|.||+|+---|.++.+.|+..+- +++|+++-
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD 65 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID 65 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc
Confidence 458999999999999999999999987765 88988874
No 152
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=45.88 E-value=60 Score=30.80 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=25.3
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFA 587 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~ 587 (711)
++++.+.||.|+--++.++.+. +-++..+++..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEEC
Confidence 4789999999999988877663 34577777754
No 153
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=45.73 E-value=59 Score=31.94 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=39.0
Q ss_pred HHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 046591 44 FVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFD 88 (711)
Q Consensus 44 F~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~ 88 (711)
-....|.|.+.+||.+.....--+.+.++||++|..+++.+++..
T Consensus 90 vaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 90 VATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred HHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 356679999999999998887778899999999999999998754
No 154
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=45.35 E-value=82 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=26.5
Q ss_pred EEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC
Q 046591 552 VCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVN 589 (711)
Q Consensus 552 I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~ 589 (711)
|++.+.||.|+--.+..+.+... ++..+++..+-
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~----~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY----QVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC----CEEEEEEcCCC
Confidence 47899999999888888877632 67888887543
No 155
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=44.98 E-value=25 Score=39.37 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=29.9
Q ss_pred HHHHHHHHHhccCCCCCeEEEEEeecCc--hhHHHHHHhhcC-CccEEEEcccCCC
Q 046591 601 DLNLISGLRMSTMDSKNVRYIKHSVKEG--SETFHVINSIGN-DFELILTGRTHDY 653 (711)
Q Consensus 601 d~~~l~~~~~~~~~~~~v~y~e~~v~~g--~~i~~~~~~~~~-~~DLiivG~~~~~ 653 (711)
..++++....+....+...|.-.+=+++ .+|.+.++..+. +||.||++|+||.
T Consensus 149 ~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 149 IRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred HHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 3345555555432222233322222222 477788877654 3899999999983
No 156
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=44.92 E-value=1.4e+02 Score=30.83 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=60.6
Q ss_pred EeccCCcchHHHHHHHHHHhc-CCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCC-eEEEEEeecCchhH
Q 046591 554 VIFLGGPDDREALAYGARMTG-DQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKN-VRYIKHSVKEGSET 631 (711)
Q Consensus 554 v~f~gg~ddreAl~~a~rma~-~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~-v~y~e~~v~~g~~i 631 (711)
++..=.+.|+-|++.|.|+.+ ..+.++|++.+-++.. ++.+++.-... .++ +...+... .+.|.
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------~~~lr~aLAmG--aDraili~d~~~-~~~d~ 96 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------EEALREALAMG--ADRAILITDRAF-AGADP 96 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------HHHHHHHHhcC--CCeEEEEecccc-cCccH
Confidence 444446899999999999999 6999999999976442 12222222222 222 22232222 23333
Q ss_pred H---HHHHhhc--CCccEEEEcccCCCC--CccccCCCCCCCCCccchhhhHh
Q 046591 632 F---HVINSIG--NDFELILTGRTHDYC--SPVLSGLVEWSESQELGVVGDIL 677 (711)
Q Consensus 632 ~---~~~~~~~--~~~DLiivG~~~~~~--~~~~~gl~~w~e~~eLG~igd~l 677 (711)
. ..+.+.. .++|||+.|...-.. ..+=..+.+|-..|..+.+.++-
T Consensus 97 ~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 97 LATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 3 3333311 279999999885322 12222344444445555444443
No 157
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=43.37 E-value=45 Score=29.05 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=48.2
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEeecCchh
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHSVKEGSE 630 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~ 630 (711)
||+++=.||.+ =++|+++++.+.+. =+++.+.+.. ..+. .+ .......|.++
T Consensus 2 kVLviGsGgRE----HAia~~l~~s~~v~--~v~~aPGN~G-~~~~------------------~~---~~~~~~~d~~~ 53 (100)
T PF02844_consen 2 KVLVIGSGGRE----HAIAWKLSQSPSVE--EVYVAPGNPG-TAEL------------------GK---NVPIDITDPEE 53 (100)
T ss_dssp EEEEEESSHHH----HHHHHHHTTCTTEE--EEEEEE--TT-GGGT------------------SE---EE-S-TT-HHH
T ss_pred EEEEECCCHHH----HHHHHHHhcCCCCC--EEEEeCCCHH-HHhh------------------ce---ecCCCCCCHHH
Confidence 67777666554 35678888887654 4555544321 1000 00 01124566678
Q ss_pred HHHHHHhhcCCccEEEEcccCCCCCccccCCCCC
Q 046591 631 TFHVINSIGNDFELILTGRTHDYCSPVLSGLVEW 664 (711)
Q Consensus 631 i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w 664 (711)
+.+++++. +.||+++|.. .|+..|+.|.
T Consensus 54 l~~~a~~~--~idlvvvGPE----~pL~~Gl~D~ 81 (100)
T PF02844_consen 54 LADFAKEN--KIDLVVVGPE----APLVAGLADA 81 (100)
T ss_dssp HHHHHHHT--TESEEEESSH----HHHHTTHHHH
T ss_pred HHHHHHHc--CCCEEEECCh----HHHHHHHHHH
Confidence 99999975 8999999964 6888888764
No 158
>PRK04972 putative transporter; Provisional
Probab=42.57 E-value=1.7e+02 Score=33.91 Aligned_cols=77 Identities=12% Similarity=0.021 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhccChhH---HHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhhhccH
Q 046591 34 FESFGLIYITFVTSVRADLSI---MTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLESTISF 110 (711)
Q Consensus 34 la~~Gl~~~lF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s~Ts~ 110 (711)
+.++|+.+|+|.+|++.-+.- +++.+.+...+++...++++++++.+++++.... . . ..=..+-+.|++
T Consensus 61 ~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~-~~G~~aGa~T~t 132 (558)
T PRK04972 61 ALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI------G-L-TAGMLAGSMTST 132 (558)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------H-H-HHHHhhccccCc
Confidence 458999999999999988765 5566667777777777777777776665543211 1 1 222234456777
Q ss_pred HHHHHHHH
Q 046591 111 YGILEILT 118 (711)
Q Consensus 111 ~vv~~iL~ 118 (711)
|.+....+
T Consensus 133 p~l~~a~~ 140 (558)
T PRK04972 133 PVLVGAGD 140 (558)
T ss_pred HHHHHHHH
Confidence 77766554
No 159
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=42.50 E-value=36 Score=36.29 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=17.9
Q ss_pred hhHHHHHHhhcC-----CccEEEEcccCCC
Q 046591 629 SETFHVINSIGN-----DFELILTGRTHDY 653 (711)
Q Consensus 629 ~~i~~~~~~~~~-----~~DLiivG~~~~~ 653 (711)
.+|.+.++.... +||+||++|+||.
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 356666665542 5999999999983
No 160
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=41.49 E-value=1.2e+02 Score=32.31 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=39.3
Q ss_pred EEEEECccccCCCccccccccCccchHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHH---HHHH
Q 046591 3 AGIALGPSFLGHNEKVSKKIFTPKTQLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLI---VTSL 79 (711)
Q Consensus 3 aGiiLGPs~Lg~~~~~~~~lf~~~~~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~---~g~~ 79 (711)
-|.+-||...-.++.|...+|. =-+.+||..+|++- .+.++.-+|..+.+-..+++.|.+ +|..
T Consensus 189 IG~~~g~~g~~~i~pf~~~lF~------------G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~ 255 (327)
T PF05982_consen 189 IGFLAGPEGVESIKPFFVDLFK------------GVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINALIGIG 255 (327)
T ss_pred HhheeCccchhhccchhhccHH------------HHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3666677665555544444442 23467788888864 233343344444444556667765 4555
Q ss_pred HHHHhhc
Q 046591 80 STVIVNQ 86 (711)
Q Consensus 80 ~~~~l~~ 86 (711)
++++++.
T Consensus 256 lg~~~gl 262 (327)
T PF05982_consen 256 LGWLLGL 262 (327)
T ss_pred HHHHhCC
Confidence 6655543
No 161
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=41.12 E-value=1.7e+02 Score=30.57 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=70.7
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC----CchhHHHHHHHHhhcCCcceEEEeccCCccccccccc
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT----NSYVIKKITKKVLKMAPCSVGILFDRREFMNSRHIFT 545 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~----~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~~~~~ 545 (711)
+.-|-.|.... ..+.+.|++.|++.+..+|+.-+.+. +...++....+..+++++||.+=-|.+.. +.....
T Consensus 17 ~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~--~e~i~~ 92 (281)
T PRK06806 17 NYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMT--FEKIKE 92 (281)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCCCC--HHHHHH
Confidence 44555665554 47899999999999999999988762 23457788888999999999998888753 111000
Q ss_pred -cCcceeEEEeccC-CcchHHHHHHHHHH---hcCCCeEE--EEEEe
Q 046591 546 -HRSAINVCVIFLG-GPDDREALAYGARM---TGDQNAML--TIIRF 585 (711)
Q Consensus 546 -~~~~~~I~v~f~g-g~ddreAl~~a~rm---a~~~~~~l--tvl~v 585 (711)
-+...+. +=+++ ..+.+|-++.++++ ++..|+.+ .+.|+
T Consensus 93 Al~~G~ts-Vm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghl 138 (281)
T PRK06806 93 ALEIGFTS-VMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRV 138 (281)
T ss_pred HHHcCCCE-EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE
Confidence 0011122 33444 34667777766655 45556553 34444
No 162
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=40.77 E-value=1.9e+02 Score=27.65 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=28.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVN 589 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~ 589 (711)
++++.|.||.|+--++.++.+. |-+++.+++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEeCCC
Confidence 4789999999999888877762 7788889987654
No 163
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=40.55 E-value=2.6e+02 Score=30.69 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=53.3
Q ss_pred HHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCC-hhHHH-HHHHHh--hcchh
Q 046591 250 MEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMP-FMDAL-SLGLLL--NCRGI 324 (711)
Q Consensus 250 l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~-~~~a~-~lgl~l--~~kG~ 324 (711)
+.+.++..++|+-....=++.|++ +... . ...+...+++.++-.+|+.+..+.++.. -.|.. ..|.+. -.-|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~-g-~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRL-G-GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHh-h-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 445556777777777777789988 5321 2 2345555566666677777766665543 22322 222222 23466
Q ss_pred HHHHHhhhccccCCCCchhhHHHHHHH
Q 046591 325 YDIQIFSRSNRRKMLSDESYGVMVMTA 351 (711)
Q Consensus 325 ~~l~~~~~~~~~~~i~~~~f~~lvl~~ 351 (711)
.-.+....+++ .+++.|+.++.+=
T Consensus 130 ~N~~Av~~al~---~~~~~~~a~~aaD 153 (378)
T PF05684_consen 130 VNFVAVAEALG---VSDSLFAAALAAD 153 (378)
T ss_pred hHHHHHHHHHC---CCHHHHHHHHHHH
Confidence 66555554443 3566666665443
No 164
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=39.71 E-value=55 Score=30.52 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=28.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVN 589 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~ 589 (711)
+|++.|.||+|+--.+.++.+...+. -+++++++.+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg~ 38 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTGY 38 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCCC
Confidence 47899999999988888887765432 467777776643
No 165
>PRK06801 hypothetical protein; Provisional
Probab=38.85 E-value=1.9e+02 Score=30.41 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=70.1
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC----CchhHHHHHHHHhhcCCcceEEEeccCCcccccccc-
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT----NSYVIKKITKKVLKMAPCSVGILFDRREFMNSRHIF- 544 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~----~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~~~~- 544 (711)
+.-|-.|-..+ ..+...|++.|++.+..+|+.-+.+. +-..+........++++.||.+=-|.+... ....
T Consensus 17 ~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~--e~i~~ 92 (286)
T PRK06801 17 GYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGLHF--EAVVR 92 (286)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCCCH--HHHHH
Confidence 44555665554 47889999999999999999988762 334578888899999999999988887531 1110
Q ss_pred -ccCcceeEEEeccCCc-chHHHHHHHHHH---hcCCCeEE
Q 046591 545 -THRSAINVCVIFLGGP-DDREALAYGARM---TGDQNAML 580 (711)
Q Consensus 545 -~~~~~~~I~v~f~gg~-ddreAl~~a~rm---a~~~~~~l 580 (711)
....+.. +-++|+. +.+|-++.++++ |+..++.+
T Consensus 93 Ai~~GftS--Vm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 93 ALRLGFSS--VMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHhCCcE--EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 0111234 3346644 347777776555 66667643
No 166
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=38.84 E-value=2.5e+02 Score=26.11 Aligned_cols=33 Identities=18% Similarity=-0.033 Sum_probs=16.6
Q ss_pred hHHHHHHHh--cccceec-ccCchhhHHHHHHHHHHHH
Q 046591 258 FLPCFLINS--GKGVNLF-STTLTGFLIVEFLIWVATT 292 (711)
Q Consensus 258 ~~PlFF~~~--G~~~d~~-l~~~~~~~~~~~ii~~~~~ 292 (711)
-+|+||+=. |.-..++ +.+ .|+.+++.+++.++
T Consensus 68 ~m~LfFVPagVGim~~~~ll~~--~~~~Il~~ivvSTl 103 (141)
T PRK04125 68 NIGFLFVPSGISVINSLGVMSQ--YPVQIIGVIIVATI 103 (141)
T ss_pred HHHHHHhhhHhHHHHhHHHHHH--HHHHHHHHHHHHHH
Confidence 368888844 4444455 654 34333333333333
No 167
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=38.32 E-value=3.6e+02 Score=31.10 Aligned_cols=139 Identities=12% Similarity=0.108 Sum_probs=67.9
Q ss_pred CChhHHHHHhhhhcCccEEEeccccCCchhHHHHHHHHhhcC-----CcceEEEeccCCccccccccccCcceeEEEecc
Q 046591 483 DSMHEDICSMTFEKCTSLVIIPFQKTNSYVIKKITKKVLKMA-----PCSVGILFDRREFMNSRHIFTHRSAINVCVIFL 557 (711)
Q Consensus 483 ~~~~~~I~~~A~e~~~dlIimg~h~~~~~~~gs~~~~Vl~~A-----pC~V~ilvdrg~~~~~~~~~~~~~~~~I~v~f~ 557 (711)
..-.+++.+.|.+.++|+||=|.. ++.++.+.+.. |.||+.+ ++.... ....+ +.++
T Consensus 264 ~~~~~~~~~~a~~~ga~~ViGPL~-------k~~V~~l~~~~~~~~~~vp~LaL-N~~~~~--------~~~~~--l~~f 325 (536)
T PF04348_consen 264 ADSADALYQQAVADGADFVIGPLL-------KSNVEALAQLPQLQAQPVPVLAL-NQPDNS--------QAPPN--LYQF 325 (536)
T ss_dssp TS-HHHHHHHHHHTT--EEE---S-------HHHHHHHHH-GG-GGTT-EEEES----TT------------TT--EEE-
T ss_pred CCCHHHHHHHHHHcCCCEEEcCCC-------HHHHHHHHhcCcccccCCceeec-cCCCcc--------cCccc--eEEE
Confidence 334578899999999999998874 44555555543 6788886 333220 01224 3445
Q ss_pred CCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEeecCchhHHHHHHh
Q 046591 558 GGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHSVKEGSETFHVINS 637 (711)
Q Consensus 558 gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~i~~~~~~ 637 (711)
|=....||-..|.++.++-.-+.-|+ .|+ +++.+...++|.+++.........+. ..++..++-..++.
T Consensus 326 ~LspEdEA~q~A~~a~~~g~~~alvl---~p~----~~~g~R~~~aF~~~W~~~gg~~~~~~----~~~~~~~~~~~i~~ 394 (536)
T PF04348_consen 326 GLSPEDEARQAAQKAFQDGYRRALVL---APQ----NAWGQRMAEAFNQQWQALGGQVAEVS----YYGSPADLQAAIQP 394 (536)
T ss_dssp ---HHHHHHHHHHHHHHTT--S-EEE---EES----SHHHHHHHHHHHHHHHHHHSS--EEE----EESSTTHHHHHHHH
T ss_pred eCCcHHHHHHHHHHHHhcCCCCEEEE---cCC----ChHHHHHHHHHHHHHHHcCCCceeeE----ecCCHHHHHHHHhh
Confidence 53334577777777766533333333 233 24667788888888887643221121 23445567777776
Q ss_pred hc-CCccEEEEccc
Q 046591 638 IG-NDFELILTGRT 650 (711)
Q Consensus 638 ~~-~~~DLiivG~~ 650 (711)
.. .+.|.|.+-..
T Consensus 395 r~r~d~D~ifl~a~ 408 (536)
T PF04348_consen 395 RRRQDIDAIFLVAN 408 (536)
T ss_dssp S--TT--EEEE---
T ss_pred cCCCCCCEEEEeCC
Confidence 44 37888776654
No 168
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=38.13 E-value=1.3e+02 Score=32.00 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=28.6
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV 588 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~ 588 (711)
.++++.+.||.|+--++.++.+.. |-+++.+++...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~---G~~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI---GDRLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh---CCCEEEEEEeCC
Confidence 579999999999988888776643 457888888764
No 169
>PRK14561 hypothetical protein; Provisional
Probab=38.09 E-value=55 Score=32.15 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=22.3
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeee
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFA 587 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~ 587 (711)
+|++.+.||.|+--.+..+.+. . +++.+++..
T Consensus 2 kV~ValSGG~DSslll~~l~~~---~--~v~a~t~~~ 33 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF---Y--DVELVTVNF 33 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc---C--CeEEEEEec
Confidence 6899999999998877766544 2 345555543
No 170
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=37.27 E-value=52 Score=31.05 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=26.1
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVN 589 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~ 589 (711)
|+++.|.||+|+.-.|.++.+...+. .++++.+..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~ 35 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGY 35 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-ST
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCc
Confidence 58899999999999999999988774 566665543
No 171
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=36.40 E-value=2.6e+02 Score=26.89 Aligned_cols=97 Identities=8% Similarity=0.110 Sum_probs=53.8
Q ss_pred eeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 046591 390 RILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQSSG 469 (711)
Q Consensus 390 rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 469 (711)
||+|.+..-..+-.++.++.... ++.+.++.++|+-.--. ..+++-.+..+++.++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~-~~~~~~~~~~~vdh~~~--------------------~~s~~~~~~v~~~~~~~-- 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELR-RRNGIKLIAVHVDHGLR--------------------EESDEEAEFVEEICEQL-- 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH-TTTTTEEEEEEEE-STS--------------------CCHHHHHHHHHHHHHHT--
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH-HhcCCCeEEEEEecCCC--------------------cccchhHHHHHHHHHhc--
Confidence 68899998888899999998888 57788999999763211 12233334455555442
Q ss_pred ceEEEEEEEEc---cCCCh--------hHHHHHhhhhcCccEEEeccccCC
Q 046591 470 SLSLQCFTATA---PYDSM--------HEDICSMTFEKCTSLVIIPFQKTN 509 (711)
Q Consensus 470 ~v~v~~~~~vs---~~~~~--------~~~I~~~A~e~~~dlIimg~h~~~ 509 (711)
+++......-. +..+. ++-+.+.|.+++++.|++|-|..+
T Consensus 58 ~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD 108 (182)
T PF01171_consen 58 GIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDD 108 (182)
T ss_dssp T-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHH
T ss_pred CCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCc
Confidence 23333222110 11121 234456788899999999998754
No 172
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=36.33 E-value=2.1e+02 Score=31.15 Aligned_cols=86 Identities=21% Similarity=0.169 Sum_probs=49.9
Q ss_pred hhhHHHHHHHhhcCCCCCch-----hHHHHHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHH
Q 046591 224 IGFWGPIILGVITPLIPPMG-----SLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFA 297 (711)
Q Consensus 224 ~~~lGaf~~Gl~l~~~~~~~-----~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~ 297 (711)
++.+=+.++|+++.-.++.. ..+.+-++.+ .+...|+-.+..|..+... ......+......+++.++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 34444444555544332222 4566666776 6788999999999988755 332223333333455566666666
Q ss_pred HHHHHhhcCCChh
Q 046591 298 IIIPSLYYKMPFM 310 (711)
Q Consensus 298 ~~l~~~~~~~~~~ 310 (711)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 6666667776544
No 173
>PRK08185 hypothetical protein; Provisional
Probab=35.56 E-value=2.2e+02 Score=29.87 Aligned_cols=104 Identities=10% Similarity=0.102 Sum_probs=69.8
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC----CchhHHHHHHHHhhcCCcceEEEeccCCccccccc--
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT----NSYVIKKITKKVLKMAPCSVGILFDRREFMNSRHI-- 543 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~----~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~~~-- 543 (711)
+.-|-.|...+ ..+.+.|++.|++.+..+|+.-+.+. +.. +........++++.||.+=-|.+.. +...
T Consensus 12 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~-~~~~~~~~a~~~~vPV~lHLDHg~~--~e~i~~ 86 (283)
T PRK08185 12 QFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLGDN-FFAYVRERAKRSPVPFVIHLDHGAT--IEDVMR 86 (283)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhccHH-HHHHHHHHHHHCCCCEEEECCCCCC--HHHHHH
Confidence 34555555554 47889999999999999999998872 333 7888889999999999998888753 1110
Q ss_pred cccCcceeEEEeccCCc-chHHHHHHHHHHh---cCCCeEE
Q 046591 544 FTHRSAINVCVIFLGGP-DDREALAYGARMT---GDQNAML 580 (711)
Q Consensus 544 ~~~~~~~~I~v~f~gg~-ddreAl~~a~rma---~~~~~~l 580 (711)
.....+.. +-++|+. +..|-++.++++. +..|+.+
T Consensus 87 ai~~Gf~S--VM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 87 AIRCGFTS--VMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 00111234 5667754 4556666666655 6666655
No 174
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=35.30 E-value=2.5e+02 Score=26.94 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=51.5
Q ss_pred hhchhhHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHhhHHHHHHHhcccceec-ccCch--hhHHHHHHHHHHHHhHHH
Q 046591 221 MGLIGFWGPIILGVITPLIPPMGS-LLTDKMEAFVWSVFLPCFLINSGKGVNLF-STTLT--GFLIVEFLIWVATTVKLF 296 (711)
Q Consensus 221 ~g~~~~lGaf~~Gl~l~~~~~~~~-~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~--~~~~~~~ii~~~~~~K~~ 296 (711)
+.+...-|+++.|+++.+..+.+. .+......+..++.+-+|...+|++.-.. +...+ .|...+. -++.++.-.+
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~-~~~i~~~~~~ 99 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLL-GVIITLVPLL 99 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHH
Confidence 344445577777887766421110 03444555567788889999999998765 33221 3333333 3333344445
Q ss_pred HHHHHHh-hcCCChhHH
Q 046591 297 AIIIPSL-YYKMPFMDA 312 (711)
Q Consensus 297 ~~~l~~~-~~~~~~~~a 312 (711)
.++..++ ++|+++-..
T Consensus 100 ~~~~~~~~~~~l~~~~~ 116 (169)
T PF06826_consen 100 IALVIGRYLFKLNPGIA 116 (169)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 5555566 888886543
No 175
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=34.31 E-value=3.5e+02 Score=29.23 Aligned_cols=43 Identities=7% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHhhhhcCccEEEeccccCC-chhHHHHHHHHhhcCCcceEEE
Q 046591 487 EDICSMTFEKCTSLVIIPFQKTN-SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 487 ~~I~~~A~e~~~dlIimg~h~~~-~~~~gs~~~~Vl~~ApC~V~il 531 (711)
.+-.+.+++...|.|.|--.-.. +. -...+++++..||||.++
T Consensus 37 ~~a~~~~~~~~PDVi~ld~emp~mdg--l~~l~~im~~~p~pVimv 80 (350)
T COG2201 37 REAIDKVKKLKPDVITLDVEMPVMDG--LEALRKIMRLRPLPVIMV 80 (350)
T ss_pred HHHHHHHHhcCCCEEEEecccccccH--HHHHHHHhcCCCCcEEEE
Confidence 45567788999999999865421 22 245678999999999886
No 176
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=34.29 E-value=5.9e+02 Score=26.98 Aligned_cols=295 Identities=13% Similarity=0.027 Sum_probs=139.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhhh
Q 046591 28 QLVISVFESFGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLEST 107 (711)
Q Consensus 28 ~~~l~~la~~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s~ 107 (711)
....+++-+-=+-...++.=++.|.+.+.|.++|...+-+.+. +..++|+.+++...+....+ .|... -++.-|-
T Consensus 55 S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~s-v~~vlGfIl~yp~~ksf~gd-~Wka~---gmi~gSy 129 (384)
T COG5505 55 SPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISS-VGTVLGFILAYPLLKSFIGD-LWKAG---GMISGSY 129 (384)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHHHHhhhcch-HHhhh---hheeeee
Confidence 3445555555555566777789999999999999776544433 34456666666655443221 12111 1111111
Q ss_pred ccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHH-HHHhhccccCcchhhH----HHHHHHHHHHHHHHHHH
Q 046591 108 ISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVL-VVLSDIQEAGIGSINL----LNLMSFMLIVIFIVFII 182 (711)
Q Consensus 108 Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~-~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~v~ 182 (711)
|. --+..-.=.+.+..| .-..+++..-|.++.-++..+ ..+...... +..+ ..-+....
T Consensus 130 tG--GSaNmAAmqaaLeVP--~~~fsatlaaDtv~ySll~~lli~iVpy~~k---w~~~tkpdesKL~A~~--------- 193 (384)
T COG5505 130 TG--GSANMAAMQAALEVP--GEYFSATLAADTVMYSLLFFLLISIVPYKWK---WRHYTKPDESKLKADG--------- 193 (384)
T ss_pred eC--CcchHHHHHhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccCccHHHHhhhh---------
Confidence 21 111111111223333 346677888887765443222 222111000 0000 00000000
Q ss_pred HHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhh---------------HHHHHHHhhcCCCCCchhHHH
Q 046591 183 RPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGF---------------WGPIILGVITPLIPPMGSLLT 247 (711)
Q Consensus 183 r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~---------------lGaf~~Gl~l~~~~~~~~~l~ 247 (711)
.-...-.- ..+.||.+-....+.+...+..++++...|-+-. +=.=+.|+++.-. |+.+ +
T Consensus 194 ~e~a~~e~--ywKrkp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s~gl~~~~gt~t~v~vsi~gLi~aLt-Pf~~-l- 268 (384)
T COG5505 194 NEGASAES--YWKRKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGLLTGLGTQTLVLVSITGLIIALT-PFER-L- 268 (384)
T ss_pred hhhhhhhh--hhhcCCccHHHHHHHhhHHHHHHHHHHHHHhhccccccccccccceeeehHHHHHHHHHHhC-cccc-C-
Confidence 00000000 0111233333444555555555555444433222 1112345554443 2332 1
Q ss_pred HHHHHHHHHhhHHHHHHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHH
Q 046591 248 DKMEAFVWSVFLPCFLINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYD 326 (711)
Q Consensus 248 ~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~ 326 (711)
...+++ ..+++=.|++.++..-|+. +...+.|.. ..+...+...+..+..++.++.+..+-.... +-|..|-.+
T Consensus 269 pgs~el-gtv~lY~~v~vias~Ad~~~i~taP~~i~---~gf~il~~h~~v~f~~~KlF~~dL~~i~~As-lAniGG~~s 343 (384)
T COG5505 269 PGSQEL-GTVLLYLFVVVIASPADLRLIVTAPLIIL---FGFIILISHLAVSFAAGKLFRVDLEEILLAS-LANIGGPTS 343 (384)
T ss_pred Cchhhh-hHHHHHHHHHHhccchhHHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhccCCccc
Confidence 112333 3455668899999999998 544333322 2223334566777777888888887665444 357777777
Q ss_pred HHHhhhccccCCCCchhhHHHHHHHHHHHHhH
Q 046591 327 IQIFSRSNRRKMLSDESYGVMVMTAMLKSAIA 358 (711)
Q Consensus 327 l~~~~~~~~~~~i~~~~f~~lvl~~ll~t~i~ 358 (711)
.-....+....++ ..-+++.++-..++
T Consensus 344 Ap~~A~A~nr~lv-----~~gvlmg~lG~~iG 370 (384)
T COG5505 344 APAMAIAKNRELV-----APGVLMGTLGYLIG 370 (384)
T ss_pred hhHHHhhcCchhc-----chHHHHHHHHHHHH
Confidence 7666666654433 34444554444433
No 177
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=34.01 E-value=1.2e+02 Score=29.80 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=24.4
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV 588 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~ 588 (711)
++++.|.||.|+--|+..+.+. +-++.-+....+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEEec
Confidence 4789999999999999888872 444554444443
No 178
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.93 E-value=1.8e+02 Score=30.44 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=52.2
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc----CCchhHHHHHHHHhhcCCcceEEEeccCCc
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK----TNSYVIKKITKKVLKMAPCSVGILFDRREF 537 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~----~~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~ 537 (711)
+..|-.|...+ ..+.+.|++.|++.++..||.-+.+ .+-..+........+++++||.+=-|.+..
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 17 GYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 34555665554 4789999999999999999988776 233457888899999999999998888753
No 179
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=32.79 E-value=2.8e+02 Score=29.46 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=68.3
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc----CCchhHHHHHHHHhhcCC-cceEEEeccCCccccccc-
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK----TNSYVIKKITKKVLKMAP-CSVGILFDRREFMNSRHI- 543 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~----~~~~~~gs~~~~Vl~~Ap-C~V~ilvdrg~~~~~~~~- 543 (711)
+..|-.|...+ -.+.+.|++.|++.+..+|+.-+.+ .+...+....+...++++ .||.+=-|.+.. +...
T Consensus 16 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~--~e~i~ 91 (307)
T PRK05835 16 GYGVGAFNFVN--FEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTT--FESCE 91 (307)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCC--HHHHH
Confidence 34566666554 4789999999999999999998877 234457778888899998 999998888753 1110
Q ss_pred -cccCcceeEEEeccCCc-chHHHHHHHHH---HhcCCCeEE
Q 046591 544 -FTHRSAINVCVIFLGGP-DDREALAYGAR---MTGDQNAML 580 (711)
Q Consensus 544 -~~~~~~~~I~v~f~gg~-ddreAl~~a~r---ma~~~~~~l 580 (711)
.....+.. +-|+|+. +..|-++..++ +|...|+.+
T Consensus 92 ~ai~~GftS--VM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (307)
T PRK05835 92 KAVKAGFTS--VMIDASHHAFEENLELTSKVVKMAHNAGVSV 131 (307)
T ss_pred HHHHcCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 00112335 5677866 33454544443 444455443
No 180
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=31.96 E-value=2e+02 Score=30.16 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=51.3
Q ss_pred eEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc----CCchhHHHHHHHHhhcCCcceEEEeccCCc
Q 046591 471 LSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK----TNSYVIKKITKKVLKMAPCSVGILFDRREF 537 (711)
Q Consensus 471 v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~----~~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~ 537 (711)
.-|-.+...+ ..+.+.+++.|++.+...|+.-+.+ .+-..+........+++++||.+=-|.+..
T Consensus 18 yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 18 YAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred CeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 4455555554 4788999999999999999998876 234457788888999999999998888753
No 181
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=31.74 E-value=42 Score=31.69 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=23.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEee
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFF 586 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~ 586 (711)
++.++|.||+|+-.|. -+-+..|-+++++-++
T Consensus 2 ~v~vLfSGGKDSSLaA----~iL~klgyev~LVTvn 33 (198)
T COG2117 2 DVYVLFSGGKDSSLAA----LILDKLGYEVELVTVN 33 (198)
T ss_pred ceEEEecCCCchhHHH----HHHHHhCCCcEEEEEE
Confidence 5789999999986554 3556667777777665
No 182
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=31.72 E-value=3.6e+02 Score=28.69 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=43.1
Q ss_pred hHHHHHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-cc-CchhhHHHHHHHHHHHHhHHHHHHHHHh
Q 046591 226 FWGPIILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-ST-TLTGFLIVEFLIWVATTVKLFAIIIPSL 303 (711)
Q Consensus 226 ~lGaf~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 303 (711)
++.+.++|...|.....+..+. .|.. ..+.+.+.|...|++++.+ +. ....|..........++.=.+.++...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888543333332 1222 2233556666679999987 43 2334543333333333333333444333
Q ss_pred hcCCChhHHHHHHHH
Q 046591 304 YYKMPFMDALSLGLL 318 (711)
Q Consensus 304 ~~~~~~~~a~~lgl~ 318 (711)
..+-...+.+..|+.
T Consensus 84 l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 84 LFPAFLPPELALGLL 98 (313)
T ss_pred HhhccCCHHHHHHHH
Confidence 332112233455543
No 183
>COG3748 Predicted membrane protein [Function unknown]
Probab=31.49 E-value=4.2e+02 Score=28.16 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=26.2
Q ss_pred HHhhHHHHHHHhcccceecccCchhhHHHHHHHHHHHHhH
Q 046591 255 WSVFLPCFLINSGKGVNLFSTTLTGFLIVEFLIWVATTVK 294 (711)
Q Consensus 255 ~~~~~PlFF~~~G~~~d~~l~~~~~~~~~~~ii~~~~~~K 294 (711)
+-+-+|..|+...=+..+.+.+..+|.+..++.+.++..|
T Consensus 226 nylTLPVlF~MlSNHyp~~~gt~fnWii~alv~l~gV~IR 265 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAFGTQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred ceehHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHH
Confidence 4577899999876666655444457876666655555444
No 184
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=30.69 E-value=8.4e+02 Score=27.65 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=7.4
Q ss_pred HHHhHHHHHHHhh
Q 046591 354 KSAIALPLLRVFY 366 (711)
Q Consensus 354 ~t~i~~pl~~~~~ 366 (711)
.+++.+.++.++.
T Consensus 442 ia~v~afvlt~~~ 454 (472)
T PRK09796 442 LAVVLSFILTLLL 454 (472)
T ss_pred HHHHHHHHHHHHh
Confidence 3555666666654
No 185
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=30.26 E-value=9.7e+02 Score=28.27 Aligned_cols=27 Identities=7% Similarity=0.338 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046591 166 LNLMSFMLIVIFIVFIIRPVMVWMMRQ 192 (711)
Q Consensus 166 ~~~~~~i~~~~~~~~v~r~~~~~~~~~ 192 (711)
..+++.++...++++++.|...|+...
T Consensus 417 ~Pllt~li~~~l~~~viGp~~~~i~~~ 443 (631)
T PRK09765 417 YPVLGTLGAGSLMLFVVGEPVAWINNS 443 (631)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666677777777777554
No 186
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=30.06 E-value=8.1e+02 Score=27.31 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHH
Q 046591 110 FYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLG 146 (711)
Q Consensus 110 ~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll 146 (711)
.|++....+.+|+.+.+.=-.+++++.+.|..+..+-
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 6888888888887554444678999999999988753
No 187
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=29.09 E-value=3.4e+02 Score=29.35 Aligned_cols=66 Identities=8% Similarity=0.105 Sum_probs=52.2
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC----CchhHHHHHHHHhhcCC-cceEEEeccCCc
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT----NSYVIKKITKKVLKMAP-CSVGILFDRREF 537 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~----~~~~~gs~~~~Vl~~Ap-C~V~ilvdrg~~ 537 (711)
+.-|-.|...+ ..+.+.|++.|++.+..+|+.-+.+. +-..+....+...++++ +||.+=-|.+..
T Consensus 15 ~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~ 85 (347)
T TIGR01521 15 GYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNS 85 (347)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 34555565554 47899999999999999999998772 34557888888999997 999998888753
No 188
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=28.45 E-value=1.1e+02 Score=35.22 Aligned_cols=71 Identities=23% Similarity=0.427 Sum_probs=39.5
Q ss_pred HHhhHHHHHHHhcccceec-c-cCchhhHHHHH------HHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHH
Q 046591 255 WSVFLPCFLINSGKGVNLF-S-TTLTGFLIVEF------LIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYD 326 (711)
Q Consensus 255 ~~~~~PlFF~~~G~~~d~~-l-~~~~~~~~~~~------ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~ 326 (711)
..+++|--..-.|.+++-. + .+........+ .+++....|+.+. ....++++++|++++|.++++.--+.
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVt 179 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVT 179 (575)
T ss_pred HHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchH
Confidence 4566776666779998876 3 33211111100 0112222233222 22346899999999999988765555
Q ss_pred H
Q 046591 327 I 327 (711)
Q Consensus 327 l 327 (711)
.
T Consensus 180 v 180 (575)
T KOG1965|consen 180 V 180 (575)
T ss_pred H
Confidence 3
No 189
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.98 E-value=3.8e+02 Score=29.01 Aligned_cols=66 Identities=9% Similarity=0.097 Sum_probs=52.5
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc----CCchhHHHHHHHHhhcCC-cceEEEeccCCc
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK----TNSYVIKKITKKVLKMAP-CSVGILFDRREF 537 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~----~~~~~~gs~~~~Vl~~Ap-C~V~ilvdrg~~ 537 (711)
+.-|-.|...+ ..+.+.|++.|++.++.+|+.-+.+ .+...+....+...++++ +||.+=-|.+..
T Consensus 17 ~yAVgAfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~ 87 (347)
T PRK09196 17 GYGVPAFNVNN--LEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNS 87 (347)
T ss_pred CceEEEeeeCC--HHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 34566666554 4789999999999999999998877 234567888888889997 999998888753
No 190
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=27.92 E-value=3.4e+02 Score=28.38 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=51.9
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc----CCchhHHHHHHHHhhcCCcceEEEeccCCc
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK----TNSYVIKKITKKVLKMAPCSVGILFDRREF 537 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~----~~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~ 537 (711)
+..|-.+...+ ..+.+.+.+.|++.+..+|+.-+.+ .+-..+....++..+++++||.+=-|.+..
T Consensus 12 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~ 81 (276)
T cd00947 12 GYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSS 81 (276)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 34555555554 3789999999999999999988766 233457888889999999999998888753
No 191
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=26.95 E-value=1.1e+03 Score=27.99 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=65.1
Q ss_pred Hhhccchhhhhh-ccccccccCCcccceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccC
Q 046591 364 VFYDTSRRYVAY-KRRTIQHTRHDAELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLD 442 (711)
Q Consensus 364 ~~~~p~~~~~~~-~~r~i~~~~~~~e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~ 442 (711)
.+|+.-|||.-. ..| =+|.|-- .-+||.-+++|+.+-+++++...+. |.+ +|++--|.+.+.....+ .+
T Consensus 537 LiyHQVRKYLL~ld~r-kdhVKfW-RPQILLlV~nPrss~~Lirf~N~LK--Kgg--LYilGHV~~gd~~~~~~--d~-- 606 (945)
T KOG1288|consen 537 LIYHQVRKYLLRLDVR-KDHVKFW-RPQILLLVSNPRSSCNLIRFCNDLK--KGG--LYILGHVIVGDDFSASM--DE-- 606 (945)
T ss_pred HHHHHHHHHHHhcchh-hhhcccc-cceEEEEecCCcccchHHHHHHhhc--ccc--eEEEEEEEecccccccc--ch--
Confidence 346667776522 111 0222221 2369999999999999999997775 444 47776665554321100 00
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhcCCceEEEEEEEEccCCChhHHHHHhhhh-----cCccEEEecccc
Q 046591 443 KMPSSSKPTKIDFILNAFRQFEQQSSGSLSLQCFTATAPYDSMHEDICSMTFE-----KCTSLVIIPFQK 507 (711)
Q Consensus 443 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e-----~~~dlIimg~h~ 507 (711)
.++--.+--++.+ ...++.|+.+.-..++-++|-++..- -+.+.+|+|||.
T Consensus 607 ----------l~~q~~~W~s~vd----~~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d 662 (945)
T KOG1288|consen 607 ----------LQQQQRAWLSFVD----DAGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYD 662 (945)
T ss_pred ----------hhHHHHHHHHHHH----HhhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeec
Confidence 1111111122221 23344455443334677777666543 367899999987
No 192
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=26.68 E-value=1.8e+02 Score=29.78 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=23.6
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEE
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTI 582 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltv 582 (711)
.+++++.|.||.|+---+..|..-++..-.-+|+
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv 50 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTV 50 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhccceEEEEE
Confidence 4589999999999987777666655533333343
No 193
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=26.01 E-value=3.2e+02 Score=24.42 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=48.9
Q ss_pred CcEEEEEEeecccCCCchhhhccccCCC-CCCCCCCchHHHHHHHHHHHHhcCCceEEEEEEEEccCCChhHHHHHhhhh
Q 046591 417 PMELHVLNLEEYVGHSLPLVISHRLDKM-PSSSKPTKIDFILNAFRQFEQQSSGSLSLQCFTATAPYDSMHEDICSMTFE 495 (711)
Q Consensus 417 ~~~v~~lhlvel~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~f~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e 495 (711)
.-.|.-+|++|.++- .+.+..++.--. .........+...+-+++..+....++-++.-- .+..+.+++.+.|++
T Consensus 22 ~r~V~~v~v~e~~d~-~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~---~~~~iP~~~i~~A~~ 97 (123)
T PF07905_consen 22 DRPVRWVHVMEAPDP-SDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGR---YLDEIPEEIIELADE 97 (123)
T ss_pred CCcEEEEEEeecCCH-HHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccC---ccccCCHHHHHHHHH
Confidence 346778999998853 222222221000 000011112335556666665443344444422 225788999999999
Q ss_pred cCccEEEeccc
Q 046591 496 KCTSLVIIPFQ 506 (711)
Q Consensus 496 ~~~dlIimg~h 506 (711)
++.-+|.+|++
T Consensus 98 ~~lPli~ip~~ 108 (123)
T PF07905_consen 98 LGLPLIEIPWE 108 (123)
T ss_pred cCCCEEEeCCC
Confidence 99999999994
No 194
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=25.87 E-value=3.1e+02 Score=28.79 Aligned_cols=65 Identities=8% Similarity=0.090 Sum_probs=51.5
Q ss_pred eEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc----CCchhHHHHHHHHhhcCCcceEEEeccCCc
Q 046591 471 LSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK----TNSYVIKKITKKVLKMAPCSVGILFDRREF 537 (711)
Q Consensus 471 v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~----~~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~ 537 (711)
.-|-.+.... ..+.+.|++.|++.++..|+.-+.+ .+-..+....+...+++++||.+=-|.+..
T Consensus 16 yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~ 84 (282)
T TIGR01858 16 YAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHES 84 (282)
T ss_pred CeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 4455555554 4789999999999999999998876 233447788899999999999998888754
No 195
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=25.86 E-value=2.4e+02 Score=29.75 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=27.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV 588 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~ 588 (711)
++++.+.||.|+--++.++.+.. +.+++.+++..+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---G~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---GDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---CCcEEEEEecCC
Confidence 47899999999998888887642 446888888765
No 196
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.28 E-value=2.1e+02 Score=29.63 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=26.0
Q ss_pred EEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCC
Q 046591 552 VCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHA 591 (711)
Q Consensus 552 I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~ 591 (711)
+++.|.||+|+--.|.++.+.... +.++++.+.-.+
T Consensus 42 ~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DTg~~f 77 (261)
T COG0175 42 VVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDTGYHF 77 (261)
T ss_pred eEEEecCchhHHHHHHHHHHhcCC----CcEEEEeCCCcC
Confidence 678888888887777777776655 677777665544
No 197
>PLN00200 argininosuccinate synthase; Provisional
Probab=25.08 E-value=1.5e+02 Score=32.82 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=28.2
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV 588 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~ 588 (711)
++|++.|.||-|+.-++..+++ +.+.+++-+++..+
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~G 41 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVG 41 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECC
Confidence 4899999999999888876655 34667888888765
No 198
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=24.85 E-value=7e+02 Score=24.84 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=28.7
Q ss_pred HHHHHHhhhccHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 046591 99 QMVTGLESTISFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLS 153 (711)
Q Consensus 99 ~~l~~~~s~Ts~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~ 153 (711)
-++|...|.|+ ++..+-++.|. +.+..+...+..++.....++=..+...+.
T Consensus 27 g~~GGlvSSTA--~t~~la~~~r~-~p~~~~~~~~~i~lA~~~m~~R~l~iv~i~ 78 (211)
T PF13194_consen 27 GLLGGLVSSTA--TTVSLARRSRE-NPELSRLLAAGILLASAVMFVRVLLIVAIL 78 (211)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777765 44444444443 445556666666666666555444444433
No 199
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=24.82 E-value=4.6e+02 Score=28.35 Aligned_cols=66 Identities=8% Similarity=0.110 Sum_probs=52.1
Q ss_pred ceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc----CCchhHHHHHHHHhhcCC-cceEEEeccCCc
Q 046591 470 SLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK----TNSYVIKKITKKVLKMAP-CSVGILFDRREF 537 (711)
Q Consensus 470 ~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~----~~~~~~gs~~~~Vl~~Ap-C~V~ilvdrg~~ 537 (711)
+.-|-.|-... -.+...|++.|++.++.+|+.-+.+ .+-..+....+...++++ +||.+=-|.+..
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~ 87 (347)
T PRK13399 17 GYGVPAFNVNN--MEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNS 87 (347)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCC
Confidence 34555665554 4788999999999999999999877 234567888889999996 999998888754
No 200
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=24.42 E-value=90 Score=34.90 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=17.3
Q ss_pred hHHHHHHhhcC--CccEEEEcccCCC
Q 046591 630 ETFHVINSIGN--DFELILTGRTHDY 653 (711)
Q Consensus 630 ~i~~~~~~~~~--~~DLiivG~~~~~ 653 (711)
+|.+.++..+. ++|+||++|+||.
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGGGs 199 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGGGS 199 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCCCC
Confidence 56666665443 4899999999984
No 201
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=24.17 E-value=8.9e+02 Score=28.55 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=9.4
Q ss_pred CCcEEEEEEeecccCC
Q 046591 416 RPMELHVLNLEEYVGH 431 (711)
Q Consensus 416 ~~~~v~~lhlvel~~~ 431 (711)
+|.+=.++.+-|++|.
T Consensus 483 aP~~G~v~~L~~v~D~ 498 (627)
T PRK09824 483 SPMTGEVVPLEQVADT 498 (627)
T ss_pred cccceEEeeHHHCCCc
Confidence 4555556666666654
No 202
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=23.85 E-value=5.6e+02 Score=24.44 Aligned_cols=96 Identities=10% Similarity=0.152 Sum_probs=56.9
Q ss_pred eeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 046591 390 RILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQSSG 469 (711)
Q Consensus 390 rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~ 469 (711)
||+++++.......++.++.... ++.+.++.++|+-.-- + ..+++-.+..+++.+..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~-~~~~~~v~~v~vd~g~-~-------------------~~~~~~~~~~~~~~~~~-- 57 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQ-PKLKIRLIAAHVDHGL-R-------------------PESDEEAEFVQQFCKKL-- 57 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH-HHcCCCEEEEEeCCCC-C-------------------hhHHHHHHHHHHHHHHc--
Confidence 68899999999999999987765 3445567787764210 0 01122344455555442
Q ss_pred ceEEEEEEEEccC-------CCh--------hHHHHHhhhhcCccEEEeccccCC
Q 046591 470 SLSLQCFTATAPY-------DSM--------HEDICSMTFEKCTSLVIIPFQKTN 509 (711)
Q Consensus 470 ~v~v~~~~~vs~~-------~~~--------~~~I~~~A~e~~~dlIimg~h~~~ 509 (711)
+++.+.... +.. .++ ++-+.+.|++++++.|+.|.|.++
T Consensus 58 gi~~~~~~~-~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 58 NIPLEIKKV-DVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred CCCEEEEEe-cchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 233222211 110 111 246667888899999999998754
No 203
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=23.82 E-value=3.5e+02 Score=28.38 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=50.9
Q ss_pred eEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC----CchhHHHHHHHHhhcCCcceEEEeccCCc
Q 046591 471 LSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT----NSYVIKKITKKVLKMAPCSVGILFDRREF 537 (711)
Q Consensus 471 v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~----~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~ 537 (711)
.-|-.|-..+ ..+.+.|++.|++.+...|+.-+.+. +-..+........+++++||.+=-|.+..
T Consensus 18 yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~ 86 (286)
T PRK12738 18 YAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHES 86 (286)
T ss_pred ceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 4455555544 47899999999999999999877662 33446788899999999999998888753
No 204
>COG2431 Predicted membrane protein [Function unknown]
Probab=23.74 E-value=8.5e+02 Score=25.42 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhccC---hhHH-HhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 046591 31 ISVFESFGLIYITFVTSVRAD---LSIM-TKSGRLGIVIGIGSYLLPLIVTSLSTVIVN 85 (711)
Q Consensus 31 l~~la~~Gl~~~lF~~Gle~d---~~~l-~~~~~~~~~i~~~~~~~p~~~g~~~~~~l~ 85 (711)
.+...+..+.+++|.+|.++. ...- +.-.|+....++...+-..+.|.+.+.++.
T Consensus 130 ~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ilssliGG~iaa~~l~ 188 (297)
T COG2431 130 PENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLLSSLIGGLIAAFLLD 188 (297)
T ss_pred chhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678999999999999987 2211 122367777777777766666666665554
No 205
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=23.57 E-value=65 Score=28.07 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.5
Q ss_pred ChhHHHHHhhhhcCccEEEecccc
Q 046591 484 SMHEDICSMTFEKCTSLVIIPFQK 507 (711)
Q Consensus 484 ~~~~~I~~~A~e~~~dlIimg~h~ 507 (711)
+-++++++.|+++++||+|+|-..
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESSHH
T ss_pred CCHHHHHHHHHHcCCCEEEECChH
Confidence 568999999999999999999643
No 206
>PRK01821 hypothetical protein; Provisional
Probab=23.35 E-value=5.9e+02 Score=23.43 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=16.2
Q ss_pred HHHHHHHhccc--ceec-ccCchhhHHHHHHHHHHHH
Q 046591 259 LPCFLINSGKG--VNLF-STTLTGFLIVEFLIWVATT 292 (711)
Q Consensus 259 ~PlFF~~~G~~--~d~~-l~~~~~~~~~~~ii~~~~~ 292 (711)
+|+||+=.|.. ...+ +.+ .|+..++.+++.++
T Consensus 71 m~LfFVPa~VGim~~~~ll~~--~~~~il~~ivvST~ 105 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLLRA--QFGPIVVSCIVSTL 105 (133)
T ss_pred HHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 67888854444 3445 553 34334443343333
No 207
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=23.10 E-value=1.3e+02 Score=30.81 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=28.5
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV 588 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~ 588 (711)
..++++.|.||.|+--++.++.+. +.++..+++..+
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~ 47 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSP 47 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCC
Confidence 458999999999999999888775 456777777654
No 208
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=22.60 E-value=2e+02 Score=29.53 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=30.6
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEeee
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQ--NAMLTIIRFFA 587 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~--~~~ltvl~v~~ 587 (711)
..+|++.+.||.|+--.+.++.++.+.. +.++..+++..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 4589999999999988888888877543 45777788764
No 209
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=22.17 E-value=92 Score=32.64 Aligned_cols=74 Identities=8% Similarity=0.158 Sum_probs=46.4
Q ss_pred HHHHHHHhcC-CCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEeecCchhHHHHHHhhcCCccE
Q 046591 566 LAYGARMTGD-QNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHSVKEGSETFHVINSIGNDFEL 644 (711)
Q Consensus 566 l~~a~rma~~-~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~i~~~~~~~~~~~DL 644 (711)
.+||-..|++ -.-++|++|= ....++.|--|++-.+.....+..+.|.|+.+.+- .++..++ -..||.
T Consensus 184 a~~AF~yAr~~~R~~vtvvHK--------aNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~--~l~lv~~-P~~~DV 252 (365)
T KOG0785|consen 184 AEYAFEYARQNGRKRVTVVHK--------ANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTC--CLKLVRN-PSCFDV 252 (365)
T ss_pred HHHHHHHHHHcCCCceEEEeh--------hhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHH--HHHHhcC-chhceE
Confidence 3344444433 3467777772 12446777778877776544566788888887666 6666665 246998
Q ss_pred EEEccc
Q 046591 645 ILTGRT 650 (711)
Q Consensus 645 iivG~~ 650 (711)
+++.--
T Consensus 253 lV~PNL 258 (365)
T KOG0785|consen 253 LVMPNL 258 (365)
T ss_pred Eeccch
Confidence 877654
No 210
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=21.66 E-value=1.6e+02 Score=28.78 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=24.2
Q ss_pred EEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec
Q 046591 552 VCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV 588 (711)
Q Consensus 552 I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~ 588 (711)
|++.+.||.|+--++.++.+... -+++.+++..+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~---~~v~~v~vd~g 34 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALG---DRVLAVTATSP 34 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhC---CcEEEEEeCCC
Confidence 57889999999888877766532 26777777644
No 211
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=21.58 E-value=2.1e+02 Score=31.22 Aligned_cols=46 Identities=9% Similarity=0.226 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhccChhHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 046591 37 FGLIYITFVTSVRADLSIMTKSGRLGIVIGIGSYLLPLIVTSLSTVI 83 (711)
Q Consensus 37 ~Gl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g~~~~~~ 83 (711)
.|..+.|+-.|.+.|++.+++..++...+++ |++.-+.+.-..++.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l-G~v~q~~i~pl~~f~ 162 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL-GFVPQYLIMPLLGFL 162 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceee-hHHHHHHHHHHHHHh
Confidence 6778899999999999999998888876554 333344443333333
No 212
>COG2431 Predicted membrane protein [Function unknown]
Probab=21.32 E-value=9.5e+02 Score=25.09 Aligned_cols=48 Identities=13% Similarity=0.247 Sum_probs=36.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCCChhHHHHHHHHhhcchhHHHHHhh
Q 046591 284 EFLIWVATTVKLFAIIIPSLYYKMPFMDALSLGLLLNCRGIYDIQIFS 331 (711)
Q Consensus 284 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~a~~lgl~l~~kG~~~l~~~~ 331 (711)
...-++..++-.++..+.+...++|+.++++++..++=-......++.
T Consensus 166 l~l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 166 LILAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 333444556778888888899999999999998887777666666655
No 213
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.28 E-value=2e+02 Score=25.03 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhhh
Q 046591 69 SYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLEST 107 (711)
Q Consensus 69 ~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s~ 107 (711)
++++|.++|..++.++...++.+..|....+++|++.+.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 456788888889999987765433222221555555443
No 214
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.06 E-value=4.2e+02 Score=27.83 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=51.0
Q ss_pred eEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc----CCchhHHHHHHHHhhcCCcceEEEeccCCc
Q 046591 471 LSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK----TNSYVIKKITKKVLKMAPCSVGILFDRREF 537 (711)
Q Consensus 471 v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~----~~~~~~gs~~~~Vl~~ApC~V~ilvdrg~~ 537 (711)
.-|-.|...+ ..+.+.|++.|++.+..+|+.-+.+ .+-..+........+++++||.+=-|.+..
T Consensus 18 yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~ 86 (284)
T PRK09195 18 YAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEK 86 (284)
T ss_pred ceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 4455555544 4789999999999999999988776 233457788889999999999998888753
No 215
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=21.02 E-value=1.8e+03 Score=28.46 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 046591 177 FIVFIIRPVMVWMMRQ 192 (711)
Q Consensus 177 ~~~~v~r~~~~~~~~~ 192 (711)
..+++.|+++.++.++
T Consensus 1049 tALfVtP~Ll~l~l~~ 1064 (1403)
T PRK12911 1049 TALFMTKFFFMIWMNK 1064 (1403)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3446667776666554
No 216
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=20.95 E-value=1.5e+02 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=24.2
Q ss_pred EEEEccCCChhHHHHHhhhhcCccEEEecccc
Q 046591 476 FTATAPYDSMHEDICSMTFEKCTSLVIIPFQK 507 (711)
Q Consensus 476 ~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~ 507 (711)
.-++-|...||..|.++|++-++|++|-|..+
T Consensus 74 IYSiRPP~El~~~il~lA~~v~adlii~pL~~ 105 (127)
T PF03686_consen 74 IYSIRPPPELQPPILELAKKVGADLIIRPLGG 105 (127)
T ss_dssp EEEES--TTSHHHHHHHHHHHT-EEEEE-BTT
T ss_pred EEEeCCChHHhHHHHHHHHHhCCCEEEECCCC
Confidence 33556778999999999999999999999865
No 217
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=20.94 E-value=1.2e+03 Score=26.11 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=25.5
Q ss_pred CCchhhHHHHHHHHHHHHhHHHHHHHhhccchhh
Q 046591 339 LSDESYGVMVMTAMLKSAIALPLLRVFYDTSRRY 372 (711)
Q Consensus 339 i~~~~f~~lvl~~ll~t~i~~pl~~~~~~p~~~~ 372 (711)
+++..|+-.-+.+++..++..|++.+...|+++-
T Consensus 181 ~s~Tif~~~nl~~~~~~~v~~~l~~~~~~P~~~~ 214 (438)
T TIGR00366 181 LNETIFSGYNLIITAIIIVFLPFITYMMMPKRGE 214 (438)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4567787777777777778889999888886653
No 218
>COG4827 Predicted transporter [General function prediction only]
Probab=20.54 E-value=7.6e+02 Score=24.53 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHh--cchhHHHHHHH-HHHHHHHH
Q 046591 33 VFESFGLIYITFVTSVRADLSIMTK--SGRLGIVIGIG-SYLLPLIV 76 (711)
Q Consensus 33 ~la~~Gl~~~lF~~Gle~d~~~l~~--~~~~~~~i~~~-~~~~p~~~ 76 (711)
..-..|..+.+|..|++.-+..=.. ..|++..|+-. +++++++.
T Consensus 9 l~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~ 55 (239)
T COG4827 9 LTYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFG 55 (239)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3347888888999888876643111 12335555444 44444443
Done!