Query 046591
Match_columns 711
No_of_seqs 295 out of 1927
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 00:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 1.2E-24 4E-29 231.7 12.0 301 30-366 59-384 (388)
2 3mt0_A Uncharacterized protein 99.9 9E-23 3.1E-27 213.8 20.8 252 388-695 7-278 (290)
3 3olq_A Universal stress protei 99.9 7.9E-23 2.7E-27 217.0 13.7 275 388-695 7-307 (319)
4 3cis_A Uncharacterized protein 99.9 7.4E-22 2.5E-26 208.7 17.7 275 388-694 19-307 (309)
5 3loq_A Universal stress protei 99.9 4.7E-22 1.6E-26 208.7 13.2 265 389-695 23-292 (294)
6 3ab8_A Putative uncharacterize 99.8 9.9E-21 3.4E-25 195.7 16.0 254 390-692 2-268 (268)
7 3fdx_A Putative filament prote 99.4 2.4E-13 8.1E-18 125.9 7.8 136 389-531 2-142 (143)
8 3s3t_A Nucleotide-binding prot 99.3 1.4E-12 4.8E-17 121.1 7.3 132 389-531 6-145 (146)
9 3hgm_A Universal stress protei 99.3 8.5E-13 2.9E-17 122.6 5.3 137 389-531 3-147 (147)
10 1tq8_A Hypothetical protein RV 99.3 4.8E-12 1.6E-16 120.3 10.2 136 388-533 17-158 (163)
11 1mjh_A Protein (ATP-binding do 99.3 6.6E-12 2.3E-16 118.8 11.0 139 389-532 6-158 (162)
12 3dlo_A Universal stress protei 99.3 4E-12 1.4E-16 119.8 9.1 127 388-531 24-154 (155)
13 2z08_A Universal stress protei 99.3 2.9E-12 9.9E-17 117.8 6.3 130 389-531 3-136 (137)
14 2dum_A Hypothetical protein PH 99.3 5.3E-12 1.8E-16 120.6 8.3 142 389-534 6-157 (170)
15 3tnj_A Universal stress protei 99.3 6.7E-12 2.3E-16 117.1 8.4 139 388-533 6-147 (150)
16 2gm3_A Unknown protein; AT3G01 99.2 4.4E-11 1.5E-15 114.7 12.4 141 388-535 5-165 (175)
17 3idf_A USP-like protein; unive 99.2 8.7E-12 3E-16 114.6 7.0 129 389-531 2-137 (138)
18 3fg9_A Protein of universal st 99.2 4.4E-12 1.5E-16 119.3 4.8 136 387-531 14-155 (156)
19 1jmv_A USPA, universal stress 99.2 1.8E-11 6E-16 112.9 8.1 130 389-533 3-138 (141)
20 3s3t_A Nucleotide-binding prot 99.2 1.4E-10 4.9E-15 107.3 12.8 129 548-692 4-146 (146)
21 1mjh_A Protein (ATP-binding do 99.1 3.6E-10 1.2E-14 106.7 12.4 130 549-694 5-160 (162)
22 3hgm_A Universal stress protei 99.1 2.2E-10 7.4E-15 106.2 10.3 127 549-691 2-147 (147)
23 3dlo_A Universal stress protei 99.1 1.8E-10 6.3E-15 108.3 9.9 127 549-692 24-155 (155)
24 3fdx_A Putative filament prote 99.1 5.2E-10 1.8E-14 103.1 11.5 126 550-692 2-143 (143)
25 2z08_A Universal stress protei 99.1 3E-10 1E-14 104.1 9.8 127 549-692 2-137 (137)
26 3tnj_A Universal stress protei 99.1 3.5E-10 1.2E-14 105.3 10.2 128 549-694 6-148 (150)
27 3idf_A USP-like protein; unive 99.1 9.2E-10 3.1E-14 100.9 12.7 126 550-692 2-138 (138)
28 1q77_A Hypothetical protein AQ 99.1 1.2E-10 4.1E-15 106.9 6.4 128 389-531 5-137 (138)
29 2dum_A Hypothetical protein PH 99.1 5.3E-10 1.8E-14 106.5 11.1 130 549-694 5-157 (170)
30 1tq8_A Hypothetical protein RV 99.1 4.3E-10 1.5E-14 106.7 9.7 130 548-694 16-159 (163)
31 3fg9_A Protein of universal st 99.0 7.8E-10 2.7E-14 103.8 9.0 128 548-692 14-156 (156)
32 3mt0_A Uncharacterized protein 98.9 5.7E-10 1.9E-14 116.2 6.6 135 387-535 133-278 (290)
33 3olq_A Universal stress protei 98.9 1.1E-09 3.7E-14 115.4 6.5 141 388-536 156-308 (319)
34 1jmv_A USPA, universal stress 98.9 4.6E-09 1.6E-13 96.5 9.9 126 549-694 2-139 (141)
35 2gm3_A Unknown protein; AT3G01 98.9 8.2E-09 2.8E-13 98.7 12.0 131 548-694 4-164 (175)
36 3loq_A Universal stress protei 98.8 8.6E-09 2.9E-13 107.3 10.6 118 387-532 169-289 (294)
37 1q77_A Hypothetical protein AQ 98.8 1.9E-08 6.6E-13 92.0 10.3 118 549-692 4-138 (138)
38 3ab8_A Putative uncharacterize 98.7 2.6E-08 9E-13 102.0 9.3 130 550-695 1-151 (268)
39 3cis_A Uncharacterized protein 98.7 6.1E-08 2.1E-12 101.7 10.5 134 547-695 17-163 (309)
40 3zux_A Transporter, ASBTNM; tr 97.4 0.095 3.3E-06 54.9 27.2 112 32-154 42-156 (332)
41 3g40_A Na-K-CL cotransporter; 96.1 0.32 1.1E-05 49.1 18.1 218 388-652 20-255 (294)
42 1zun_A Sulfate adenylyltransfe 78.5 3.6 0.00012 42.6 7.2 55 550-611 47-101 (325)
43 1sur_A PAPS reductase; assimil 61.3 45 0.0015 31.7 10.3 51 550-611 45-95 (215)
44 1wy5_A TILS, hypothetical UPF0 59.9 13 0.00043 38.2 6.3 40 549-588 24-64 (317)
45 1ni5_A Putative cell cycle pro 54.6 19 0.00064 38.8 6.8 97 549-652 13-119 (433)
46 2wsi_A FAD synthetase; transfe 54.5 14 0.00048 37.7 5.6 95 550-653 54-169 (306)
47 3zux_A Transporter, ASBTNM; tr 52.5 80 0.0027 32.4 11.0 95 230-332 28-125 (332)
48 3a2k_A TRNA(Ile)-lysidine synt 52.0 14 0.00049 40.0 5.5 59 549-611 18-76 (464)
49 1efp_B ETF, protein (electron 40.8 15 0.00053 36.3 3.2 32 555-587 32-65 (252)
50 2oq2_A Phosphoadenosine phosph 39.9 33 0.0011 33.9 5.5 40 551-591 43-82 (261)
51 1efv_B Electron transfer flavo 38.9 34 0.0011 33.9 5.3 33 554-587 34-68 (255)
52 3o4f_A Spermidine synthase; am 37.5 41 0.0014 34.0 5.7 84 549-652 84-168 (294)
53 1o97_C Electron transferring f 37.5 27 0.00091 34.8 4.3 34 554-587 31-66 (264)
54 2l0e_A Sodium/hydrogen exchang 36.9 8.5 0.00029 25.2 0.3 28 94-122 3-30 (33)
55 3fwk_A FMN adenylyltransferase 33.4 38 0.0013 34.4 4.7 91 551-652 60-171 (308)
56 3gxq_A Putative regulator of t 29.5 32 0.0011 23.6 2.2 27 469-499 10-36 (54)
57 2k3c_A TMIX peptide; membrane 26.3 2 7E-05 28.2 -4.1 27 213-239 5-31 (33)
58 3k32_A Uncharacterized protein 25.6 1.5E+02 0.005 27.8 7.2 36 550-589 7-42 (203)
59 4b4t_W RPN10, 26S proteasome r 25.0 1.3E+02 0.0045 29.8 6.9 53 550-610 108-163 (268)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.91 E-value=1.2e-24 Score=231.66 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHH----Hhcch--hHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHH
Q 046591 30 VISVFESFGLIYITFVTSVRADLSIM----TKSGR--LGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTG 103 (711)
Q Consensus 30 ~l~~la~~Gl~~~lF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ 103 (711)
...-+.+-.+.++||.+|+|+|.+.+ ++.+| .....++.|+++|++++. .+. .. ...+ .....
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~-~~-----~~~~-~~gw~ 127 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFN-YA-----DPIT-REGWA 127 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGC-CS-----STTH-HHHTS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHh-cC-----Chhh-hhhhH
Confidence 34556677788999999999999877 55444 378889999999998732 222 11 1234 55566
Q ss_pred HhhhccHHHHHHHHHhhccc-cChhHHHHHHHHHHHhHHHHHHHHHHHHHhhccccCcchhhHHHHHHHHHHHHHHHHHH
Q 046591 104 LESTISFYGILEILTDMKLL-NSELGRLALSSSLTNTLLNMTLGTVLVVLSDIQEAGIGSINLLNLMSFMLIVIFIVFII 182 (711)
Q Consensus 104 ~~s~Ts~~vv~~iL~el~l~-~s~~G~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~ 182 (711)
+.+.|+.+....++..++.. .+..++.+++.|++||+.+|+++++++. ++ . + ..+... .+++.+..
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~--~--~~~l~~-~~~~~~~~---- 194 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-L--S--MASLGV-AAVAIAVL---- 194 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-C--C--HHHHHH-HHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-c--c--HHHHHH-HHHHHHHH----
Confidence 67778888888999987764 4566799999999999999999998853 11 1 1 112211 11111111
Q ss_pred HHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHhhcCCCC----CchhHHHHHHHHHHHHhh
Q 046591 183 RPVMVWMMRQTPEGKRLKNEHVIALNIMVVCSYFVSESMGLIGFWGPIILGVITPLIP----PMGSLLTDKMEAFVWSVF 258 (711)
Q Consensus 183 r~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~~~~~g~~~~lGaf~~Gl~l~~~~----~~~~~l~~~l~~~~~~~~ 258 (711)
+..+|.. ++....+.++. +++.+.++..|+|+++|+|++|+++|..+ +..+++++++++++..++
T Consensus 195 -----~~l~r~~----v~~~~~y~~lg--l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~i 263 (388)
T 1zcd_A 195 -----AVLNLCG----ARRTGVYILVG--VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLI 263 (388)
T ss_dssp -----HHHHHTT----CCCTHHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTH
T ss_pred -----HHHHHhc----chhHHHHHHHH--HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHH
Confidence 2223321 12233344332 24456679999999999999999999853 346789999999999999
Q ss_pred HHHH-HHHhcccceec-ccCchhhHHHHHHHHHHHHhHHHHHHHHHh----hc------CCChhHHHHHHHHhhcchhHH
Q 046591 259 LPCF-LINSGKGVNLF-STTLTGFLIVEFLIWVATTVKLFAIIIPSL----YY------KMPFMDALSLGLLLNCRGIYD 326 (711)
Q Consensus 259 ~PlF-F~~~G~~~d~~-l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~----~~------~~~~~~a~~lgl~l~~kG~~~ 326 (711)
+|+| |+..|+++|.. +..... .....+++..+++|++|++..++ +. |++|+|...+|++++.+++++
T Consensus 264 lPlFaFanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftms 342 (388)
T 1zcd_A 264 LPLFAFANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMS 342 (388)
T ss_dssp HHHHHHHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHH
T ss_pred HHHHHHHhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHH
Confidence 9999 99999999985 432211 11234455568999999555444 44 999999999999999999999
Q ss_pred HHHhhhccccCC--CCchhhHHHHHHHHHHHHhHHHHHHHhh
Q 046591 327 IQIFSRSNRRKM--LSDESYGVMVMTAMLKSAIALPLLRVFY 366 (711)
Q Consensus 327 l~~~~~~~~~~~--i~~~~f~~lvl~~ll~t~i~~pl~~~~~ 366 (711)
+++++.+++.+. +.++.+..+++++++++.+++.++++.+
T Consensus 343 L~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 343 IFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998876 3567788999999998888888777654
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.90 E-value=9e-23 Score=213.77 Aligned_cols=252 Identities=15% Similarity=0.125 Sum_probs=182.0
Q ss_pred cceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHH-HHHHHHHh
Q 046591 388 ELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILN-AFRQFEQQ 466 (711)
Q Consensus 388 e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~f~~~~~~ 466 (711)
-.|||+|+|++++...+++.+..++ +..+.+++++|+++ + .+ .++.++ ..+.+.+
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la-~~~~a~l~ll~v~~-~---------~~------------~~~~l~~~~~~~~~- 62 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIA-GVTQSHLHLLVCEK-R---------RD------------HSAALNDLAQELRE- 62 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHH-HHHCCEEEEEEECS-S---------SC------------CHHHHHHHHHHHHH-
T ss_pred hceEEEEeCCCccchHHHHHHHHHH-HhcCCeEEEEEeeC-c---------HH------------HHHHHHHHHHHHhh-
Confidence 3589999999999999999999999 57788999999987 2 00 012222 2222222
Q ss_pred cCCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCC---chhHHHHHHHHhhcCCcceEEEeccCCccccccc
Q 046591 467 SSGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN---SYVIKKITKKVLKMAPCSVGILFDRREFMNSRHI 543 (711)
Q Consensus 467 ~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~---~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~~~ 543 (711)
.+++++..+.. .++..+.|++.|+++++||||||+|+.+ +.++|++.+++++++||||+++.... . +
T Consensus 63 --~~~~~~~~~~~--~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~~-~--~--- 132 (290)
T 3mt0_A 63 --EGYSVSTNQAW--KDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTAR-P--W--- 132 (290)
T ss_dssp --TTCCEEEEEEC--SSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCCS-C--S---
T ss_pred --CCCeEEEEEEe--CCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCCC-C--C---
Confidence 35667666543 2579999999999999999999999932 55689999999999999999984221 1 1
Q ss_pred cccCcceeEEEeccCCcc-------hHHHHHHHHHHhcCCCeEEEEEEeeecCCCC-------cchhhhhhHHHHHHHHH
Q 046591 544 FTHRSAINVCVIFLGGPD-------DREALAYGARMTGDQNAMLTIIRFFAVNHAT-------KDLIEEKNDLNLISGLR 609 (711)
Q Consensus 544 ~~~~~~~~I~v~f~gg~d-------dreAl~~a~rma~~~~~~ltvl~v~~~~~~~-------~~~~~~~~d~~~l~~~~ 609 (711)
..++|+++++|+++ ++.|+++|.++|+..+++++++|+.++.... ..+..++..++.++++.
T Consensus 133 ----~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (290)
T 3mt0_A 133 ----TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQ 208 (290)
T ss_dssp ----TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHH
Confidence 35799999999998 7999999999999999999999998764321 01112223334455554
Q ss_pred hccCC-CCCeEEEEEeecC-chhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCccc
Q 046591 610 MSTMD-SKNVRYIKHSVKE-GSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNAS 687 (711)
Q Consensus 610 ~~~~~-~~~v~y~e~~v~~-g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~s 687 (711)
.+... ...... ..++ .+++.+++++. ++||++||++++ +|+.+| -+|++.+.++.+ ++||
T Consensus 209 ~~~g~~~~~~~v---~~g~~~~~I~~~a~~~--~~dLiVmG~~g~------~~~~~~----~~Gsv~~~vl~~---~~~p 270 (290)
T 3mt0_A 209 AEYGFSDEQLHI---EEGPADVLIPRTAQKL--DAVVTVIGTVAR------TGLSGA----LIGNTAEVVLDT---LESD 270 (290)
T ss_dssp HHHTCCTTTEEE---EESCHHHHHHHHHHHH--TCSEEEEECCSS------CCGGGC----CSCHHHHHHHTT---CSSE
T ss_pred HHcCCCcceEEE---eccCHHHHHHHHHHhc--CCCEEEECCCCC------cCCcce----ecchHHHHHHhc---CCCC
Confidence 44321 112222 1223 24577777765 899999999986 456665 699999999999 9999
Q ss_pred EEEEeeec
Q 046591 688 VMVMQQQA 695 (711)
Q Consensus 688 vLvvqq~~ 695 (711)
||||+.+.
T Consensus 271 VLvv~~~~ 278 (290)
T 3mt0_A 271 VLVLKPDD 278 (290)
T ss_dssp EEEECCHH
T ss_pred EEEECCCC
Confidence 99998654
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.88 E-value=7.9e-23 Score=216.96 Aligned_cols=275 Identities=9% Similarity=0.056 Sum_probs=186.6
Q ss_pred cceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhc
Q 046591 388 ELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQS 467 (711)
Q Consensus 388 e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 467 (711)
-.|||||+|++++...+++.+..++ ++.+..++++|+++-.....+-....+.. ........++..+.++++.+..
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ 82 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIV-QRNGGRIKAFLPVYDLSYDMTTLLSPDER---NAMRKGVINQKTAWIKQQARYY 82 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHH-HHHCCEEEEEEEECCGGGGCTTTSCHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCcccHHHHHHHHHHH-HHcCCeEEEEEEecccchhhccccChhhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999 57788999999986321100000000000 0000001122233444443321
Q ss_pred -CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcceEEEeccCCccccccc
Q 046591 468 -SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCSVGILFDRREFMNSRHI 543 (711)
Q Consensus 468 -~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~~~ 543 (711)
..+++++..+.. .++..+.|++.|+++++||||||+|+. + +.++|++.++|++++||||+++.++...
T Consensus 83 ~~~~v~~~~~~~~--~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~------ 154 (319)
T 3olq_A 83 LEAGIQIDIKVIW--HNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKEWP------ 154 (319)
T ss_dssp HHTTCCEEEEEEE--CSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSCCC------
T ss_pred hhcCCeEEEEEEe--cCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcccc------
Confidence 245777776652 278999999999999999999999993 2 5568999999999999999998543211
Q ss_pred cccCcceeEEEeccCCcc-------hHHHHHHHHHHhcCC--CeEEEEEEeeecCCCC-------c-----chhhhhhHH
Q 046591 544 FTHRSAINVCVIFLGGPD-------DREALAYGARMTGDQ--NAMLTIIRFFAVNHAT-------K-----DLIEEKNDL 602 (711)
Q Consensus 544 ~~~~~~~~I~v~f~gg~d-------dreAl~~a~rma~~~--~~~ltvl~v~~~~~~~-------~-----~~~~~~~d~ 602 (711)
..+||+++++|+++ ++.|+++|.++++.. +++++++|+.++.... . .+..++..+
T Consensus 155 ----~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (319)
T 3olq_A 155 ----EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHL 230 (319)
T ss_dssp ----TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHH
T ss_pred ----cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHH
Confidence 25799999999995 499999999999988 9999999998764321 0 011122334
Q ss_pred HHHHHHHhccCCCCCeEEEEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCC
Q 046591 603 NLISGLRMSTMDSKNVRYIKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSD 681 (711)
Q Consensus 603 ~~l~~~~~~~~~~~~v~y~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d 681 (711)
+.++++..+.... .+.+ ....++. +++.+++++. ++||++||++++ +|+.+| -+|++.+.++.+
T Consensus 231 ~~l~~~~~~~~~~-~~~~-~v~~g~~~~~I~~~a~~~--~~dLiV~G~~g~------~~~~~~----~~Gsv~~~vl~~- 295 (319)
T 3olq_A 231 IAMKELRQKFSIP-EEKT-HVKEGLPEQVIPQVCEEL--NAGIVVLGILGR------TGLSAA----FLGNTAEQLIDH- 295 (319)
T ss_dssp HHHHHHHHHTTCC-GGGE-EEEESCHHHHHHHHHHHT--TEEEEEEECCSC------CSTHHH----HHHHHHHHHHTT-
T ss_pred HHHHHHHHHhCCC-cccE-EEecCCcHHHHHHHHHHh--CCCEEEEeccCc------cCCccc----cccHHHHHHHhh-
Confidence 4555554443211 1111 1112232 3566777764 899999999976 355555 699999999999
Q ss_pred CCCcccEEEEeeec
Q 046591 682 FKSNASVMVMQQQA 695 (711)
Q Consensus 682 ~~~~~svLvvqq~~ 695 (711)
++||||||+.+.
T Consensus 296 --~~~pVLvv~~~~ 307 (319)
T 3olq_A 296 --IKCDLLAIKPDG 307 (319)
T ss_dssp --CCSEEEEECCTT
T ss_pred --CCCCEEEECCCC
Confidence 999999998764
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.87 E-value=7.4e-22 Score=208.73 Aligned_cols=275 Identities=13% Similarity=0.160 Sum_probs=178.0
Q ss_pred cceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCc-hh-hhccccCCCCCCCCCCchHHHHHHHHHHHH
Q 046591 388 ELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSL-PL-VISHRLDKMPSSSKPTKIDFILNAFRQFEQ 465 (711)
Q Consensus 388 e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~-~~-~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 465 (711)
..|||||+|++++...+++.+..++ ++.+.+++++|+++ +.... +. ..+.+.. .......++.++.+.+..+
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~ 92 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDA-ELRKIPLTLVHAVS-PEVATWLEVPLPPGVL----RWQQDHGRHLIDDALKVVE 92 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHH-HHHTCCEEEEEECC-CCCCCTTCCCCCHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHH-HhcCCcEEEEEEec-CcccccccCCCCchhh----HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999988 56778999999997 32210 00 0000000 0000112223332222222
Q ss_pred hc---CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcceEEEeccCCccc
Q 046591 466 QS---SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCSVGILFDRREFMN 539 (711)
Q Consensus 466 ~~---~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~ 539 (711)
.. ..+++++..+.. ++..+.|++.|+ ++||||||.|+. + +.++||+.++|++++||||+++..+....
T Consensus 93 ~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~~- 166 (309)
T 3cis_A 93 QASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVM- 166 (309)
T ss_dssp HHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTTCCCS-
T ss_pred HhcccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCCcccC-
Confidence 11 125677765543 689999999996 899999999983 3 55689999999999999999985433210
Q ss_pred cccccccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCC---c-c-hhhhhhHHHHHHHHHhccCC
Q 046591 540 SRHIFTHRSAINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHAT---K-D-LIEEKNDLNLISGLRMSTMD 614 (711)
Q Consensus 540 ~~~~~~~~~~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~---~-~-~~~~~~d~~~l~~~~~~~~~ 614 (711)
.....++|+++++|+++++.|+++|.++|+..+++++++++.++.... . + +..++..++.+++.......
T Consensus 167 -----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (309)
T 3cis_A 167 -----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQE 241 (309)
T ss_dssp -----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred -----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 011357899999999999999999999999999999999998764321 0 0 11122223333333221100
Q ss_pred -CCCeEEEEEeecCchhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEee
Q 046591 615 -SKNVRYIKHSVKEGSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQ 693 (711)
Q Consensus 615 -~~~v~y~e~~v~~g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq 693 (711)
...+.+ +..+..|. ..+.|.+.++++||++||++++ +++.+| -+|++.+.++.+ ++|+||||+.
T Consensus 242 ~~~~~~~-~~~~~~g~-~~~~I~~~a~~adliV~G~~~~------~~~~~~----l~Gsv~~~vl~~---~~~pVlvv~~ 306 (309)
T 3cis_A 242 RYPNVAI-TRVVVRDQ-PARQLVQRSEEAQLVVVGSRGR------GGYAGM----LVGSVGETVAQL---ARTPVIVARE 306 (309)
T ss_dssp HCTTSCE-EEEEESSC-HHHHHHHHHTTCSEEEEESSCS------SCCTTC----SSCHHHHHHHHH---CSSCEEEECC
T ss_pred hCCCCcE-EEEEEcCC-HHHHHHHhhCCCCEEEECCCCC------CCcccc----ccCcHHHHHHhc---CCCCEEEeCC
Confidence 011112 12233442 2233333334899999999976 345554 699999999999 9999999985
Q ss_pred e
Q 046591 694 Q 694 (711)
Q Consensus 694 ~ 694 (711)
+
T Consensus 307 ~ 307 (309)
T 3cis_A 307 S 307 (309)
T ss_dssp -
T ss_pred C
Confidence 3
No 5
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.87 E-value=4.7e-22 Score=208.68 Aligned_cols=265 Identities=13% Similarity=0.054 Sum_probs=182.5
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhcC
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQSS 468 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 468 (711)
.|||||+|++++...+++.+..++ ++.+.+++++|+++.+..... .................++.++.+.+..+ .
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFK-KVGVEEIGVLFVINLTKLSTV--SGGIDIDHYIDEMSEKAEEVLPEVAQKIE--A 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHH-HTTCCEEEEECCEECTTC-------CCCTTHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred ccEEEecCCCHHHHHHHHHHHHHH-hhcCCEEEEEEEecCcccccc--cccccHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 589999999999999999999999 688899999999986542110 00000000000000112233333333322 2
Q ss_pred CceEEEE-EEEEccCCChhHHHHHhhhhcCccEEEeccccCC---chhHHHHHHHHhhcCCcceEEEeccCCcccccccc
Q 046591 469 GSLSLQC-FTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN---SYVIKKITKKVLKMAPCSVGILFDRREFMNSRHIF 544 (711)
Q Consensus 469 ~~v~v~~-~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~---~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~~~~~~ 544 (711)
.+++++. .+. ..++..+.| .|+++++||||||.|+.+ +.++||+.++|++++||||+++.+....
T Consensus 98 ~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~------- 166 (294)
T 3loq_A 98 AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDMVV------- 166 (294)
T ss_dssp TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCTTT-------
T ss_pred cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCcccc-------
Confidence 4577776 332 126789999 999999999999999843 4568999999999999999998443211
Q ss_pred ccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEe
Q 046591 545 THRSAINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHS 624 (711)
Q Consensus 545 ~~~~~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~ 624 (711)
....++|+++++|++++++|+++|.++++..+++++++++.++.. .++..+++.+.++... . .+.+ ...
T Consensus 167 -~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~~~~~~l~~~~--~-~~~~-~~~ 235 (294)
T 3loq_A 167 -NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLRVMEEVIGAEG--I-EVHV-HIE 235 (294)
T ss_dssp -TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHHHHHHHHHHTT--C-CEEE-EEE
T ss_pred -CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHHHHHHHHHHcC--C-cEEE-EEe
Confidence 123579999999999999999999999999999999999987643 1233334444444332 1 1222 222
Q ss_pred ecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEeeec
Q 046591 625 VKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQQA 695 (711)
Q Consensus 625 v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq~~ 695 (711)
.++. +++.+++++. ++||++||++++ +++.+| -+|++.+.++.+ ++||||||++..
T Consensus 236 ~g~~~~~I~~~a~~~--~~dLlV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pvLvv~~~~ 292 (294)
T 3loq_A 236 SGTPHKAILAKREEI--NATTIFMGSRGA------GSVMTM----ILGSTSESVIRR---SPVPVFVCKRGD 292 (294)
T ss_dssp CSCHHHHHHHHHHHT--TCSEEEEECCCC------SCHHHH----HHHCHHHHHHHH---CSSCEEEECSCT
T ss_pred cCCHHHHHHHHHHhc--CcCEEEEeCCCC------CCccce----eeCcHHHHHHhc---CCCCEEEECCCC
Confidence 2222 3566666654 899999999975 345555 699999999999 999999998753
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.84 E-value=9.9e-21 Score=195.65 Aligned_cols=254 Identities=11% Similarity=0.056 Sum_probs=170.9
Q ss_pred eeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCC--------CCCchHHHHHHHH
Q 046591 390 RILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSS--------KPTKIDFILNAFR 461 (711)
Q Consensus 390 rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~f~ 461 (711)
|||+|+|++++...+++.+..++ ++.+.+++++|+++.+....+........ ..+ .....++..+.++
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 77 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLA-YKLSAPLTVLFVVDTRLARIPELLDFGAL---TVPVPVLRTELERALALRGEAVLE 77 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHH-HHHTCCEEEEEEEEHHHHTHHHHC----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEeccCCcccccccCchHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998 56778999999987542110000000000 000 0001122223333
Q ss_pred HHHHhc-CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc-C-C--chhHHHHHHHHhhcCCcceEEEeccCC
Q 046591 462 QFEQQS-SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-T-N--SYVIKKITKKVLKMAPCSVGILFDRRE 536 (711)
Q Consensus 462 ~~~~~~-~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~-~--~~~~gs~~~~Vl~~ApC~V~ilvdrg~ 536 (711)
++.+.. ..+++++..+.. ++..+.|++. ++++||||||.|+ + + +.++||+.++|++++||||+++..+..
T Consensus 78 ~~~~~~~~~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~~ 152 (268)
T 3ab8_A 78 RVRQSALAAGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEPV 152 (268)
T ss_dssp HHHHHHHHTTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSCC
T ss_pred HHHHHHHhCCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCCC
Confidence 333221 235666666543 6899999998 8999999999998 4 4 456899999999999999999743211
Q ss_pred ccccccccccCcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCC
Q 046591 537 FMNSRHIFTHRSAINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSK 616 (711)
Q Consensus 537 ~~~~~~~~~~~~~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 616 (711)
..++|+++++|+++++.|+++|.++++..+++++++++.++.. ..++..++..+.++... .
T Consensus 153 -----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-----~~~~~l~~~~~~l~~~~--~- 213 (268)
T 3ab8_A 153 -----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA-----RAEAWALEAEAYLRDHG--V- 213 (268)
T ss_dssp -----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH-----HHHHHHHHHHHHHHHTT--C-
T ss_pred -----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH-----HHHHHHHHHHHHHHHcC--C-
Confidence 2469999999999999999999999999999999999986431 12233334444444321 1
Q ss_pred CeEEEEEeecCchhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 617 NVRYIKHSVKEGSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 617 ~v~y~e~~v~~g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
.+.+ .+.+|. ..+.|.+.++++||++||+ |+.+| -+|++.+.+..+ +++|||||+
T Consensus 214 ~~~~---~~~~g~-~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~---~~~pvlvv~ 268 (268)
T 3ab8_A 214 EASA---LVLGGD-AADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN---AQGPVLTAR 268 (268)
T ss_dssp CEEE---EEECSC-HHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH---CSSCEEEEC
T ss_pred ceEE---EEeCCC-hHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc---CCCCEEEeC
Confidence 2222 223342 2333433344449999999 33444 699999999999 999999984
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.41 E-value=2.4e-13 Score=125.88 Aligned_cols=136 Identities=16% Similarity=0.168 Sum_probs=96.7
Q ss_pred ceeEEEEeccCC--hHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHh
Q 046591 389 LRILACIYEENN--VATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQ 466 (711)
Q Consensus 389 ~rILv~i~~~~~--~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 466 (711)
.|||+|+|++++ ...+++.+..++ +..+.+++++|+++.+............. ........++..+.++++.++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~ 77 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEA-RIDDAEVHFLTVIPSLPYYASLGMAYTAE---LPGMDELREGSETQLKEIAKK 77 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHH-HHHTCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHH-HhcCCeEEEEEEecCCcccccccccccch---hhhHHHHHHHHHHHHHHHHHH
Confidence 489999999999 999999999888 57788999999998653211110000000 001112345556666666654
Q ss_pred c-CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCC--chhHHHHHHHHhhcCCcceEEE
Q 046591 467 S-SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 467 ~-~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
. ..++.++..+.. ++..+.|++.|+++++||||||.|+++ +.++||+.++|++++||||+++
T Consensus 78 ~~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 78 FSIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp SCCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred cCCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEe
Confidence 3 234556666654 689999999999999999999999854 5568999999999999999986
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.33 E-value=1.4e-12 Score=121.09 Aligned_cols=132 Identities=16% Similarity=0.148 Sum_probs=95.3
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhh--hccccCCCCCCCCCCchHHHHHHHHHHHHh
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLV--ISHRLDKMPSSSKPTKIDFILNAFRQFEQQ 466 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 466 (711)
.|||+|+|++++...+++.+..++ ++.+.+++++|+++.+....... ...+.. ....++..+.++++.+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~ 77 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIA-QRHQANLTALYVVDDSAYHTPALDPVLSELL-------DAEAAHAKDAMRQRQQF 77 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH-HHHTCEEEEEEEEECCCCCCGGGHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEecCccccccccccccHHHH-------HHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998 57788999999998764322110 000000 01122233334444332
Q ss_pred c-CCce-EEEEEEEEccCCChhHHHHH-hhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcceEEE
Q 046591 467 S-SGSL-SLQCFTATAPYDSMHEDICS-MTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 467 ~-~~~v-~v~~~~~vs~~~~~~~~I~~-~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
. ..++ .++..+.. ++..+.|++ .|+++++||||||.|+. + +.++||+.++|++++||||+++
T Consensus 78 ~~~~g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 78 VATTSAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HTTSSCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHhcCCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEe
Confidence 1 2356 66666554 579999999 99999999999999983 3 5568999999999999999986
No 9
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.32 E-value=8.5e-13 Score=122.62 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=92.3
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhh--hccccCCCCCCCCCCchHHHHHHHHHHHHh
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLV--ISHRLDKMPSSSKPTKIDFILNAFRQFEQQ 466 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 466 (711)
.|||+|+|++++...+++.+..++ ++.+.+++++|+++.+....... ...+.............++.++.+.+..+.
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQ-QLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHH-HHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999998 56788999999998542100000 000000000000011223333333333322
Q ss_pred cCCceEE---EEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CC--chhHHHHHHHHhhcCCcceEEE
Q 046591 467 SSGSLSL---QCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TN--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 467 ~~~~v~v---~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
.++++ +..+.. ++..+.|++.|+++++||||||.|+ ++ +.++||+.++|++++||||+++
T Consensus 82 --~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 82 --LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp --TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred --cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 34444 555444 6899999999999999999999998 33 5568999999999999999874
No 10
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.31 E-value=4.8e-12 Score=120.34 Aligned_cols=136 Identities=8% Similarity=0.047 Sum_probs=93.2
Q ss_pred cceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEE--EeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHH
Q 046591 388 ELRILACIYEENNVATIINVLGASIFPQRPMELHVL--NLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQ 465 (711)
Q Consensus 388 e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~l--hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 465 (711)
..|||+|+|++++...+++.+..++ + .+.+++++ |+++.+....+.....+.. ........++.++.+.+..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA-~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIA-G-ADAKLIIASAYLPQHEDARAADILKDESY---KVTGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHH-T-TTSEEEEEEECCC-----------------------CCTHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHh-C-CCCEEEEEEeeeccCcccccccccccHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999 7 88999999 8887543201100000000 01112234455554444333
Q ss_pred hcCCceE-EEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcceEEEec
Q 046591 466 QSSGSLS-LQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCSVGILFD 533 (711)
Q Consensus 466 ~~~~~v~-v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~V~ilvd 533 (711)
. .+++ ++..+.. ++..+.|++.|+++++||||||.|+. + +.++||+.++|++++||||+++..
T Consensus 92 ~--~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 92 N--AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp T--TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECC
T ss_pred H--cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeC
Confidence 2 3465 6665543 68999999999999999999999983 3 556899999999999999999843
No 11
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.31 E-value=6.6e-12 Score=118.80 Aligned_cols=139 Identities=13% Similarity=0.131 Sum_probs=93.9
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccC----CCchhh-----h-ccccCCCCCCCCCCchHHHHH
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVG----HSLPLV-----I-SHRLDKMPSSSKPTKIDFILN 458 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~----~~~~~~-----~-~~~~~~~~~~~~~~~~~~i~~ 458 (711)
.|||+|+|++++...+++.+..++ +..+.+++++|+++... ...+.. . +.+.... ........++..+
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFK-TLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFE-NELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTC-CSSCCEEEEEEEEEGGGTC-----------------CHHHH-HHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH-hhcCCeEEEEEEecCccccccccccccccccccccchhhhH-HHHHHHHHHHHHH
Confidence 589999999999999999999999 57889999999998530 000000 0 0000000 0000001122233
Q ss_pred HHHHHHHhc-CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CC--chhHHHHHHHHhhcCCcceEEEe
Q 046591 459 AFRQFEQQS-SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TN--SYVIKKITKKVLKMAPCSVGILF 532 (711)
Q Consensus 459 ~f~~~~~~~-~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~--~~~~gs~~~~Vl~~ApC~V~ilv 532 (711)
.++++.+.. ..+++++..+.. ++..+.|++.|+++++||||||.|+ ++ +.++||+.++|++++||||+|+.
T Consensus 84 ~l~~~~~~~~~~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~ 158 (162)
T 1mjh_A 84 KMENIKKELEDVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHHHHHHcCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEe
Confidence 344443221 245677666544 6899999999999999999999998 33 55689999999999999999984
No 12
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.31 E-value=4e-12 Score=119.82 Aligned_cols=127 Identities=10% Similarity=0.054 Sum_probs=93.1
Q ss_pred cceeEEEEec-cCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHh
Q 046591 388 ELRILACIYE-ENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQ 466 (711)
Q Consensus 388 e~rILv~i~~-~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 466 (711)
-.|||+|+|+ +++...+++.+..++ +..+.+++++|+++.+..... +. ....++.++.+.+..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la-~~~~a~l~llhV~~~~~~~~~-----~~--------~~~~~~~l~~~~~~~~~ 89 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEA-RLRGVPVYVVHSLPGGGRTKD-----ED--------IIEAKETLSWAVSIIRK 89 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHH-HHHTCCEEEEEEECCSTTSCH-----HH--------HHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEEcCCCcccH-----HH--------HHHHHHHHHHHHHHHHh
Confidence 4689999999 999999999999998 567789999999985432110 00 01223334433333332
Q ss_pred cCCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CC--chhHHHHHHHHhhcCCcceEEE
Q 046591 467 SSGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TN--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 467 ~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
.++.++..+.+ ..++..+.|++.|+++++||||||.|+ ++ +.++||+.++|++++||||+++
T Consensus 90 --~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 --EGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp --TTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred --cCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEe
Confidence 23444443333 337899999999999999999999998 33 5568999999999999999987
No 13
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.28 E-value=2.9e-12 Score=117.75 Aligned_cols=130 Identities=14% Similarity=0.110 Sum_probs=91.2
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhcC
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQSS 468 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~ 468 (711)
.|||+|+|+++....+++.+..++ ++.+.+++++|+++.. .. +. ..... ........++..+.++++.+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~-~~-~~---~~~~~--~~~~~~~~~~~~~~l~~~~~~-- 72 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEA-EAHGARLIVVHAYEPV-PD-YL---GEPFF--EEALRRRLERAEGVLEEARAL-- 72 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHH-HHHTCEEEEEEEECC---------------------CHHHHHHHHHHHHHHHH--
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHH-hhcCCEEEEEEEecCC-Cc-cc---cccch--HHHHHHHHHHHHHHHHHHHHH--
Confidence 479999999999999999999998 5678899999999732 11 11 00000 000111233444555555543
Q ss_pred Cce-EEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CC--chhHHHHHHHHhhcCCcceEEE
Q 046591 469 GSL-SLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TN--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 469 ~~v-~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
.++ +++..+.. ++..+.|++.|+++++||||||.|+ ++ +.++||+.++|++++||||+++
T Consensus 73 ~g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 73 TGVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HCCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEE
T ss_pred cCCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEe
Confidence 223 33333332 6899999999999999999999998 33 5668999999999999999986
No 14
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.28 E-value=5.3e-12 Score=120.58 Aligned_cols=142 Identities=11% Similarity=0.036 Sum_probs=93.3
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchh-hhc---cccCCCCCCCCCCchHHHHHHHHHHH
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPL-VIS---HRLDKMPSSSKPTKIDFILNAFRQFE 464 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~-~~~---~~~~~~~~~~~~~~~~~i~~~f~~~~ 464 (711)
.|||+|+|++++...+++.+..++ ++.+.+++++|+++.+...... -.. ...............++..+.++++.
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRN-KMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHC-CSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHH-HhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999 5888999999998743210000 000 00000000000011122233333333
Q ss_pred Hhc-CCceEEEE--EEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcceEEEecc
Q 046591 465 QQS-SGSLSLQC--FTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCSVGILFDR 534 (711)
Q Consensus 465 ~~~-~~~v~v~~--~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~V~ilvdr 534 (711)
+.. ..+++++. .+.. ++..+.|++.|+++++||||||.|+. + +.++||+.++|++++||||+|+..+
T Consensus 85 ~~~~~~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~ 157 (170)
T 2dum_A 85 EEVKRAFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEV 157 (170)
T ss_dssp HHHHHHTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHcCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccC
Confidence 221 12344444 4433 68999999999999999999999983 3 5568999999999999999998543
No 15
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.27 E-value=6.7e-12 Score=117.08 Aligned_cols=139 Identities=10% Similarity=0.099 Sum_probs=90.4
Q ss_pred cceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHhc
Q 046591 388 ELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQS 467 (711)
Q Consensus 388 e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~ 467 (711)
-.|||+|+|++++...+++.+..++ +..+.+++++|+++......+... ...............++..+.++++.++.
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLA-SQIGARLSLIHVLDNIPMPDTPYG-TAIPLDTETTYDAMLDVEKQKLSQIGNTL 83 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHH-HHHTCEEEEEEEEC--------CT-TCCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHH-hhcCCEEEEEEEEcCccccccccc-cccCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3689999999999999999999998 577889999999985422100000 00000000001122344555666665543
Q ss_pred CCceE-EEEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CC-chhHHHHHHHHhhcCCcceEEEec
Q 046591 468 SGSLS-LQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TN-SYVIKKITKKVLKMAPCSVGILFD 533 (711)
Q Consensus 468 ~~~v~-v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~-~~~~gs~~~~Vl~~ApC~V~ilvd 533 (711)
. ++ ++..+.. ++..+.|++.|+++++||||||.|+ ++ ..++||+.++|++++||||+++..
T Consensus 84 ~--~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 84 G--IDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp T--CCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEEC
T ss_pred C--CCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEeC
Confidence 2 22 2233332 6899999999999999999999998 32 445799999999999999999854
No 16
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.23 E-value=4.4e-11 Score=114.72 Aligned_cols=141 Identities=8% Similarity=0.119 Sum_probs=88.1
Q ss_pred cceeEEEEeccC---------ChHHHHHHHHhcCCCC--CCcEEEEEEeecccCCCchh----hh-ccccCCCCCCCCCC
Q 046591 388 ELRILACIYEEN---------NVATIINVLGASIFPQ--RPMELHVLNLEEYVGHSLPL----VI-SHRLDKMPSSSKPT 451 (711)
Q Consensus 388 e~rILv~i~~~~---------~~~~~l~la~~~~~~~--~~~~v~~lhlvel~~~~~~~----~~-~~~~~~~~~~~~~~ 451 (711)
-.|||+|+|+++ ....+++.+..++.+. .+.+++++|+++........ .. ..+.. .....
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 80 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFR----DMRQS 80 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHH----HHTTS
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHH----HHHHH
Confidence 368999999999 9999999998865222 57899999998643211000 00 00000 00001
Q ss_pred chHHHHHHHHHHHHhc-CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcc
Q 046591 452 KIDFILNAFRQFEQQS-SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCS 527 (711)
Q Consensus 452 ~~~~i~~~f~~~~~~~-~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~ 527 (711)
..++..+.++++.+.. ..+++++..+.. ++..+.|++.|+++++||||||.|+. + +.++||+.++|++++|||
T Consensus 81 ~~~~~~~~l~~~~~~~~~~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~p 157 (175)
T 2gm3_A 81 NKAKGLHLLEFFVNKCHEIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECP 157 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCC
Confidence 1122223333333221 134666665544 68999999999999999999999983 3 567899999999999999
Q ss_pred eEEEeccC
Q 046591 528 VGILFDRR 535 (711)
Q Consensus 528 V~ilvdrg 535 (711)
|+++..+.
T Consensus 158 Vlvv~~~~ 165 (175)
T 2gm3_A 158 VMTIKRNA 165 (175)
T ss_dssp EEEEECCG
T ss_pred EEEEcCCc
Confidence 99986543
No 17
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.23 E-value=8.7e-12 Score=114.55 Aligned_cols=129 Identities=11% Similarity=0.001 Sum_probs=91.9
Q ss_pred ceeEEEEeccCChHHHHHHHHhcC-CCCCCcEEEEEEeecccCCCchhhh-ccccCCCCCCCCCCch-HHHHHHHHHHHH
Q 046591 389 LRILACIYEENNVATIINVLGASI-FPQRPMELHVLNLEEYVGHSLPLVI-SHRLDKMPSSSKPTKI-DFILNAFRQFEQ 465 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~-~~~~~~~v~~lhlvel~~~~~~~~~-~~~~~~~~~~~~~~~~-~~i~~~f~~~~~ 465 (711)
.|||+|+|++++...+++.+..++ . +.+.+++++|+++.+........ ..+.. .... ++..+.++++.+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~-~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~ 73 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGK-DADCTLTLIHVKPEFMLYGEAVLAAYDEI-------EMKEEEKAKLLTQKFST 73 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTT-CTTEEEEEEEEECCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhcc-CCCCEEEEEEEecCCCcccccccCcHHHH-------HHHHHHHHHHHHHHHHH
Confidence 379999999999999999999888 5 67889999999987643211100 00000 0011 222333333333
Q ss_pred hc-CCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcceEEE
Q 046591 466 QS-SGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 466 ~~-~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~V~il 531 (711)
.. ..+++++..+.. ++..+.|++.|+ ++||||||.|+. + +.+ ||+.++|++++||||+++
T Consensus 74 ~~~~~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 74 FFTEKGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHTTTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEE
T ss_pred HHHHCCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEe
Confidence 21 245666666554 689999999998 999999999983 3 556 999999999999999986
No 18
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.23 E-value=4.4e-12 Score=119.28 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=92.4
Q ss_pred ccceeEEEEe--ccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHH
Q 046591 387 AELRILACIY--EENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFE 464 (711)
Q Consensus 387 ~e~rILv~i~--~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 464 (711)
.-.|||+|+| ++++...+++.+..++ +..+.+++++|+++.+..........+.. .......++.++.+.+..
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 88 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLA-HDYDVPLGICSVLESEDINIFDSLTPSKI----QAKRKHVEDVVAEYVQLA 88 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHH-HHHTCCEEEEEEECCCCTTCCCSSHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHH-HhcCCEEEEEEEEeCCCccccccCCHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3468999999 9999999999999998 57788999999998653210000000000 000011233333333322
Q ss_pred HhcCCce-EEEEEEEEccCCChhHHHHHh-hhhcCccEEEecccc-CC-chhHHHHHHHHhhcCCcceEEE
Q 046591 465 QQSSGSL-SLQCFTATAPYDSMHEDICSM-TFEKCTSLVIIPFQK-TN-SYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 465 ~~~~~~v-~v~~~~~vs~~~~~~~~I~~~-A~e~~~dlIimg~h~-~~-~~~~gs~~~~Vl~~ApC~V~il 531 (711)
+. .++ .++..+..+ ++..+.|++. |+++++||||||.|+ ++ +.++||+.++|++++||||+++
T Consensus 89 ~~--~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 89 EQ--RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HH--HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEE
T ss_pred HH--cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEe
Confidence 22 234 355555442 5899999999 999999999999998 33 4478999999999999999986
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.21 E-value=1.8e-11 Score=112.93 Aligned_cols=130 Identities=8% Similarity=0.101 Sum_probs=90.3
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeec-ccCCCchh--hhccccCCCCCCCCCCchHHHHHHHHHHHH
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEE-YVGHSLPL--VISHRLDKMPSSSKPTKIDFILNAFRQFEQ 465 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlve-l~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 465 (711)
.|||+|+|++++...+++.+..++ +..+.+++++|+++ .+...... ....+.. . ...++..+.++++.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~l~~~~~ 74 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIA-KRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQ----D---RISTETQKALLDLAE 74 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHH-HHHTCEEEEEEEEECCGGGCCCCEEHHHHHHT----T---CCCCHHHHHHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHH-HhcCCEEEEEEEecCchhhhccccccchHHHH----H---HHHHHHHHHHHHHHH
Confidence 479999999999999999999998 56778999999984 23211000 0000100 0 112334455555554
Q ss_pred hcCCceEE-EEEEEEccCCChhHHHHHhhhhcCccEEEeccccCC--chhHHHHHHHHhhcCCcceEEEec
Q 046591 466 QSSGSLSL-QCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTN--SYVIKKITKKVLKMAPCSVGILFD 533 (711)
Q Consensus 466 ~~~~~v~v-~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~--~~~~gs~~~~Vl~~ApC~V~ilvd 533 (711)
+. ++++ +..+.. ++..+.|++.|+++++||||||.| .+ +. +||+.++|++++||||+++..
T Consensus 75 ~~--~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~-lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 75 SV--DYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK-LMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp HS--SSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH-HHHHHHHHHTTCCSEEEEEEC
T ss_pred Hc--CCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh-hcchHHHHHhcCCCCEEEeeC
Confidence 42 2333 233322 578999999999999999999999 54 33 699999999999999999854
No 20
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.19 E-value=1.4e-10 Score=107.34 Aligned_cols=129 Identities=12% Similarity=0.093 Sum_probs=89.5
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCc----------chhhhhhHHHHHHHHHhccCCCC-
Q 046591 548 SAINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATK----------DLIEEKNDLNLISGLRMSTMDSK- 616 (711)
Q Consensus 548 ~~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~----------~~~~~~~d~~~l~~~~~~~~~~~- 616 (711)
..++|+++++|+++++.|+++|.++|+..+++++++|+.++..... .+..++..++.++++.......+
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 83 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA 83 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3679999999999999999999999999999999999998643211 01223344455555554322111
Q ss_pred -CeEEEEEeecCc-hhHHH-HHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 617 -NVRYIKHSVKEG-SETFH-VINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 617 -~v~y~e~~v~~g-~~i~~-~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
.+.+ +...++. +++.+ ++++ .++||++||+|++ .++.+| -+|++.+.++.+ ++||||||+
T Consensus 84 ~~~~~-~~~~g~~~~~I~~~~a~~--~~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlvV~ 146 (146)
T 3s3t_A 84 PNLKT-EISYGIPKHTIEDYAKQH--PEIDLIVLGATGT------NSPHRV----AVGSTTSYVVDH---APCNVIVIR 146 (146)
T ss_dssp CCCEE-EEEEECHHHHHHHHHHHS--TTCCEEEEESCCS------SCTTTC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred cceEE-EEecCChHHHHHHHHHhh--cCCCEEEECCCCC------CCcceE----EEcchHHHHhcc---CCCCEEEeC
Confidence 1221 2222232 34555 5554 3899999999975 344444 699999999999 999999985
No 21
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.12 E-value=3.6e-10 Score=106.72 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=89.1
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC-----C---CC-------cc---------hhhhhhHHHH
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVN-----H---AT-------KD---------LIEEKNDLNL 604 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~-----~---~~-------~~---------~~~~~~d~~~ 604 (711)
.++|+++++|+++++.|+++|.++|+..+++++++|+.++. . .. .. +..++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998764 2 11 11 0111233445
Q ss_pred HHHHHhccCCCCCeEEE-EEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCC
Q 046591 605 ISGLRMSTMDSKNVRYI-KHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDF 682 (711)
Q Consensus 605 l~~~~~~~~~~~~v~y~-e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~ 682 (711)
++++.......+ +.+. ....++. +++.+++++. ++|||+||+|++ +++.+| -+|++.+.++.+
T Consensus 85 l~~~~~~~~~~g-~~~~~~v~~G~~~~~I~~~a~~~--~~dlIV~G~~g~------~~~~~~----~~GSv~~~vl~~-- 149 (162)
T 1mjh_A 85 MENIKKELEDVG-FKVKDIIVVGIPHEEIVKIAEDE--GVDIIIMGSHGK------TNLKEI----LLGSVTENVIKK-- 149 (162)
T ss_dssp HHHHHHHHHHTT-CEEEEEEEEECHHHHHHHHHHHT--TCSEEEEESCCS------SCCTTC----SSCHHHHHHHHH--
T ss_pred HHHHHHHHHHcC-CceEEEEcCCCHHHHHHHHHHHc--CCCEEEEcCCCC------CCccce----EecchHHHHHHh--
Confidence 555543211111 2221 1222232 3566777764 899999999975 345554 699999999999
Q ss_pred CCcccEEEEeee
Q 046591 683 KSNASVMVMQQQ 694 (711)
Q Consensus 683 ~~~~svLvvqq~ 694 (711)
++||||||+..
T Consensus 150 -~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 -SNKPVLVVKRK 160 (162)
T ss_dssp -CCSCEEEECCC
T ss_pred -CCCCEEEEeCC
Confidence 99999999864
No 22
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.11 E-value=2.2e-10 Score=106.16 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=87.6
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCC-C---------C----cchhhhhhHHHHHHHHHh----
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNH-A---------T----KDLIEEKNDLNLISGLRM---- 610 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~-~---------~----~~~~~~~~d~~~l~~~~~---- 610 (711)
.+||+++++|+++++.|+++|.++|+..+++++++|+.++.. . . ..+..++..++.++++..
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999987532 0 0 012222334444544443
Q ss_pred ccCCCCCeEEEEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEE
Q 046591 611 STMDSKNVRYIKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVM 689 (711)
Q Consensus 611 ~~~~~~~v~y~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svL 689 (711)
.....+.+.+ ....++. +++.+.+++. ++||++||+|++ +++.+| -+|++.+.++.+ ++||||
T Consensus 82 ~g~~~~~~~~-~~~~g~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVl 145 (147)
T 3hgm_A 82 LGVPADKVRA-FVKGGRPSRTIVRFARKR--ECDLVVIGAQGT------NGDKSL----LLGSVAQRVAGS---AHCPVL 145 (147)
T ss_dssp TTCCGGGEEE-EEEESCHHHHHHHHHHHT--TCSEEEECSSCT------TCCSCC----CCCHHHHHHHHH---CSSCEE
T ss_pred cCCCccceEE-EEecCCHHHHHHHHHHHh--CCCEEEEeCCCC------ccccce----eeccHHHHHHhh---CCCCEE
Confidence 2211111122 2223332 3566666654 899999999985 344444 699999999999 999999
Q ss_pred EE
Q 046591 690 VM 691 (711)
Q Consensus 690 vv 691 (711)
||
T Consensus 146 vV 147 (147)
T 3hgm_A 146 VV 147 (147)
T ss_dssp EC
T ss_pred EC
Confidence 96
No 23
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.11 E-value=1.8e-10 Score=108.33 Aligned_cols=127 Identities=12% Similarity=0.058 Sum_probs=89.1
Q ss_pred ceeEEEeccC-CcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCC-CCCeEEEEEeec
Q 046591 549 AINVCVIFLG-GPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMD-SKNVRYIKHSVK 626 (711)
Q Consensus 549 ~~~I~v~f~g-g~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-~~~v~y~e~~v~ 626 (711)
.++|+++++| ++.++.|+++|.++|+..+++++++++.++..... +..++..++.++++...... .-.+.. +..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~-~~~v~ 101 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRKEGAEGEE-HLLVR 101 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEE-EEEES
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHhcCCCceE-EEEec
Confidence 5799999999 99999999999999999999999999997643221 22233344444444432111 112222 22333
Q ss_pred Cc---hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 627 EG---SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 627 ~g---~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
.| +++.+++++. ++||+|||++++ +++.+| -+|++.+.++.. ++||||||+
T Consensus 102 ~G~~~~~I~~~a~~~--~~DLIV~G~~g~------~~~~~~----~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 102 GKEPPDDIVDFADEV--DAIAIVIGIRKR------SPTGKL----IFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp SSCHHHHHHHHHHHT--TCSEEEEECCEE------CTTSCE----ECCHHHHHHHHH---CSSCEEEEC
T ss_pred CCCHHHHHHHHHHHc--CCCEEEECCCCC------CCCCCE----EeccHHHHHHHh---CCCCEEEeC
Confidence 33 3566666654 899999999975 344444 699999999999 999999985
No 24
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.08 E-value=5.2e-10 Score=103.14 Aligned_cols=126 Identities=7% Similarity=0.058 Sum_probs=84.0
Q ss_pred eeEEEeccCCcc--hHHHHHHHHHHhcCCCeEEEEEEeeecCCCC---------c---chhhhhhHHHHHHHHHhccCCC
Q 046591 550 INVCVIFLGGPD--DREALAYGARMTGDQNAMLTIIRFFAVNHAT---------K---DLIEEKNDLNLISGLRMSTMDS 615 (711)
Q Consensus 550 ~~I~v~f~gg~d--dreAl~~a~rma~~~~~~ltvl~v~~~~~~~---------~---~~~~~~~d~~~l~~~~~~~~~~ 615 (711)
+||+++++|+++ ++.|+++|.++|+..+++++++|+.++.... . .+...+...+.++++..+....
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999 9999999999999999999999999763210 0 0111122223333333332111
Q ss_pred C-CeEEEEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 616 K-NVRYIKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 616 ~-~v~y~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
. .+.+ ....++. +++.+.+++. ++||++||+|+ + |+.+| -+|++.+.++.+ ++||||||+
T Consensus 82 ~~~v~~-~~~~g~~~~~I~~~a~~~--~~dliV~G~~~---~----~~~~~----~~Gs~~~~v~~~---~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHF-HVAEGSPKDKILALAKSL--PADLVIIASHR---P----DITTY----LLGSNAAAVVRH---AECSVLVVR 143 (143)
T ss_dssp GGGEEE-EEEESCHHHHHHHHHHHT--TCSEEEEESSC---T----TCCSC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred CCceEE-EEEecChHHHHHHHHHHh--CCCEEEEeCCC---C----CCeee----eeccHHHHHHHh---CCCCEEEeC
Confidence 1 2222 2222332 3566666654 89999999994 1 34444 699999999999 999999984
No 25
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.08 E-value=3e-10 Score=104.15 Aligned_cols=127 Identities=11% Similarity=0.075 Sum_probs=87.6
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCC--C---c---chhhhhhHHHHHHHHHhccCCCCCeEE
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHA--T---K---DLIEEKNDLNLISGLRMSTMDSKNVRY 620 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~--~---~---~~~~~~~d~~~l~~~~~~~~~~~~v~y 620 (711)
.++|+++++|+++++.|+++|.++|+..+++++++|+.++... . . .+..++..++.++++..+. +...+.+
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~ 80 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT-GVPKEDA 80 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH-CCCGGGE
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc-CCCccEE
Confidence 4689999999999999999999999999999999999875321 1 0 1112334455666655431 1101112
Q ss_pred EEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 621 IKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 621 ~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
. ...++. +++.+++++. ++||++||+|++ +++.+| -+|++.+.++.+ ++||||||+
T Consensus 81 ~-~~~g~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~~~----~~Gs~~~~vl~~---~~~pVlvv~ 137 (137)
T 2z08_A 81 L-LLEGVPAEAILQAARAE--KADLIVMGTRGL------GALGSL----FLGSQSQRVVAE---APCPVLLVR 137 (137)
T ss_dssp E-EEESSHHHHHHHHHHHT--TCSEEEEESSCT------TCCSCS----SSCHHHHHHHHH---CSSCEEEEC
T ss_pred E-EEecCHHHHHHHHHHHc--CCCEEEECCCCC------chhhhh----hhccHHHHHHhc---CCCCEEEeC
Confidence 1 222332 4566777764 899999999975 244443 699999999999 999999984
No 26
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.08 E-value=3.5e-10 Score=105.31 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=85.1
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCC--------------CcchhhhhhHHHHHHHHHhccCC
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHA--------------TKDLIEEKNDLNLISGLRMSTMD 614 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~--------------~~~~~~~~~d~~~l~~~~~~~~~ 614 (711)
.++|+++++|+++++.|+++|.++|+..+++++++|+.++... +..+..++..++.++++..+..
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 84 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG- 84 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 5799999999999999999999999999999999999876321 0112223344455555554431
Q ss_pred CCCeEEEEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEee
Q 046591 615 SKNVRYIKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQ 693 (711)
Q Consensus 615 ~~~v~y~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq 693 (711)
.+.+.. ....++. +++.+++++. ++||++||+|++ +++. | -+|++.+.++.+ ++||||||+.
T Consensus 85 ~~~~~~-~~~~g~~~~~I~~~a~~~--~~dliV~G~~~~------~~~~-~----~~Gs~~~~vl~~---~~~pVlvv~~ 147 (150)
T 3tnj_A 85 IDPAHR-WLVWGEPREEIIRIAEQE--NVDLIVVGSHGR------HGLA-L----LLGSTANSVLHY---AKCDVLAVRL 147 (150)
T ss_dssp CCGGGE-EEEESCHHHHHHHHHHHT--TCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEEEEC
T ss_pred CCcceE-EEecCCHHHHHHHHHHHc--CCCEEEEecCCC------CCcC-e----EecchHHHHHHh---CCCCEEEEeC
Confidence 111111 1222232 3566666664 899999999975 2343 3 799999999999 9999999986
Q ss_pred e
Q 046591 694 Q 694 (711)
Q Consensus 694 ~ 694 (711)
.
T Consensus 148 ~ 148 (150)
T 3tnj_A 148 R 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.07 E-value=9.2e-10 Score=100.86 Aligned_cols=126 Identities=16% Similarity=0.126 Sum_probs=84.0
Q ss_pred eeEEEeccCCcchHHHHHHHHHHh-cCCCeEEEEEEeeecCCCCc---------chhhh-hhHHHHHHHHHhccCCCCCe
Q 046591 550 INVCVIFLGGPDDREALAYGARMT-GDQNAMLTIIRFFAVNHATK---------DLIEE-KNDLNLISGLRMSTMDSKNV 618 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma-~~~~~~ltvl~v~~~~~~~~---------~~~~~-~~d~~~l~~~~~~~~~~~~v 618 (711)
+||+++++|+++++.|+++|.++| +..+++++++|+.++..... .+..+ +..++.++++.......+ +
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~ 80 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKG-I 80 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-C
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 689999999999999999999999 99999999999998754211 01111 333444555443321111 1
Q ss_pred EEEEEeecCchhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 619 RYIKHSVKEGSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 619 ~y~e~~v~~g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
.+ +..+..|.....+++.. +++||++||+|++ +++.+| - |++.+.++.+ ++||||||+
T Consensus 81 ~~-~~~v~~g~~~~~I~~~a-~~~dliV~G~~~~------~~~~~~----~-Gs~~~~vl~~---~~~pVlvv~ 138 (138)
T 3idf_A 81 NP-FVVIKEGEPVEMVLEEA-KDYNLLIIGSSEN------SFLNKI----F-ASHQDDFIQK---APIPVLIVK 138 (138)
T ss_dssp CC-EEEEEESCHHHHHHHHH-TTCSEEEEECCTT------STTSSC----C-CCTTCHHHHH---CSSCEEEEC
T ss_pred Ce-EEEEecCChHHHHHHHH-hcCCEEEEeCCCc------chHHHH----h-CcHHHHHHhc---CCCCEEEeC
Confidence 12 12223332222333333 3899999999975 344444 4 9999999999 999999984
No 28
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.07 E-value=1.2e-10 Score=106.94 Aligned_cols=128 Identities=13% Similarity=0.006 Sum_probs=85.9
Q ss_pred ceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEee-cc-cCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHh
Q 046591 389 LRILACIYEENNVATIINVLGASIFPQRPMELHVLNLE-EY-VGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQ 466 (711)
Q Consensus 389 ~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlv-el-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 466 (711)
.|||+|+|+++....+++.+..++ ++.+.+++++|++ +. +.. +.......... ........++..+.++++ +.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-~~ 79 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFS-EKLGAELDILAVLEDVYNLE--RANVTFGLPFP-PEIKEESKKRIERRLREV-WE 79 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHH-TTTCCEEEEEEECHHHHHHH--HHHHHHCCCCC-THHHHHHHHHHHHHHHHH-HH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHH-HHcCCeEEEEEEeccccccc--ccccccCCCCC-hHHHHHHHHHHHHHHHHH-HH
Confidence 589999999999999999999999 5788999999999 63 210 00000000000 000000112222333333 22
Q ss_pred ---cCCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccCCchhHHHHHHHHhhcCCcceEEE
Q 046591 467 ---SSGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKTNSYVIKKITKKVLKMAPCSVGIL 531 (711)
Q Consensus 467 ---~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~~~~~~gs~~~~Vl~~ApC~V~il 531 (711)
...+ +++..+. .++..+.|++.|+++++||||||.|+. |+.++|++++||||+++
T Consensus 80 ~~~~~~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 80 KLTGSTE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp HHHSCCC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG------GGTHHHHHHSSSEEEEC
T ss_pred HhhccCC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC------chHHHHHHhCCCceEee
Confidence 1233 4444443 278999999999999999999999865 89999999999999986
No 29
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.07 E-value=5.3e-10 Score=106.52 Aligned_cols=130 Identities=8% Similarity=-0.043 Sum_probs=88.0
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCC---------------c--c--hhhhhhHHHHHHHHH
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHAT---------------K--D--LIEEKNDLNLISGLR 609 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~---------------~--~--~~~~~~d~~~l~~~~ 609 (711)
.++|+++++|+++++.|+++|.++|+..+++++++|+.++.... + + +..++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998753210 0 0 111223334444444
Q ss_pred hcc--CCCCCeEE-EEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCc
Q 046591 610 MST--MDSKNVRY-IKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSN 685 (711)
Q Consensus 610 ~~~--~~~~~v~y-~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~ 685 (711)
... .+.+ +.+ .....++. +++.+++++. ++||||||+|++ +++.+| -+|++.+.++.+ ++
T Consensus 85 ~~~~~~g~~-~~~~~~~~~g~~~~~I~~~a~~~--~~DlIV~G~~g~------~~~~~~----~~Gsv~~~vl~~---~~ 148 (170)
T 2dum_A 85 EEVKRAFRA-KNVRTIIRFGIPWDEIVKVAEEE--NVSLIILPSRGK------LSLSHE----FLGSTVMRVLRK---TK 148 (170)
T ss_dssp HHHHHHTTC-SEEEEEEEEECHHHHHHHHHHHT--TCSEEEEESCCC------CC--TT----CCCHHHHHHHHH---CS
T ss_pred HHHHHcCCc-eeeeeEEecCChHHHHHHHHHHc--CCCEEEECCCCC------Cccccc----eechHHHHHHHh---CC
Confidence 321 0111 221 11222232 3566777664 899999999975 244444 699999999999 99
Q ss_pred ccEEEEeee
Q 046591 686 ASVMVMQQQ 694 (711)
Q Consensus 686 ~svLvvqq~ 694 (711)
||||||+..
T Consensus 149 ~PVlvv~~~ 157 (170)
T 2dum_A 149 KPVLIIKEV 157 (170)
T ss_dssp SCEEEECCC
T ss_pred CCEEEEccC
Confidence 999999854
No 30
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.05 E-value=4.3e-10 Score=106.74 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=85.9
Q ss_pred cceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEE--EeeecCCC--C----c---chhhhhhHHHHHHHHHhccCCCC
Q 046591 548 SAINVCVIFLGGPDDREALAYGARMTGDQNAMLTII--RFFAVNHA--T----K---DLIEEKNDLNLISGLRMSTMDSK 616 (711)
Q Consensus 548 ~~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl--~v~~~~~~--~----~---~~~~~~~d~~~l~~~~~~~~~~~ 616 (711)
..++|+++++|++.++.|+++|.++|+ .+++++++ ++.++... . . .+..++..++.++++.......+
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 94 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAG 94 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 367999999999999999999999999 99999999 88764321 0 0 01122333444555443221111
Q ss_pred -C-eEEEEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEee
Q 046591 617 -N-VRYIKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQ 693 (711)
Q Consensus 617 -~-v~y~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq 693 (711)
. +.+ +...++. +++.+++++. ++||||||++++ +++.+| -+|++.+.++.+ ++||||||+.
T Consensus 95 v~~v~~-~v~~G~~~~~I~~~a~~~--~~DLIV~G~~g~------~~~~~~----~lGSva~~vl~~---a~~PVlvV~~ 158 (163)
T 1tq8_A 95 AKNVEE-RPIVGAPVDALVNLADEE--KADLLVVGNVGL------STIAGR----LLGSVPANVSRR---AKVDVLIVHT 158 (163)
T ss_dssp CCEEEE-EEECSSHHHHHHHHHHHT--TCSEEEEECCCC------CSHHHH----HTBBHHHHHHHH---TTCEEEEECC
T ss_pred CCeEEE-EEecCCHHHHHHHHHHhc--CCCEEEECCCCC------Ccccce----eeccHHHHHHHh---CCCCEEEEeC
Confidence 1 222 2222332 3566666654 899999999975 244444 699999999999 9999999986
Q ss_pred e
Q 046591 694 Q 694 (711)
Q Consensus 694 ~ 694 (711)
.
T Consensus 159 ~ 159 (163)
T 1tq8_A 159 T 159 (163)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.00 E-value=7.8e-10 Score=103.77 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=86.3
Q ss_pred cceeEEEecc--CCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCc--------chhhhhhHHHHHHHHHhccC--CC
Q 046591 548 SAINVCVIFL--GGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATK--------DLIEEKNDLNLISGLRMSTM--DS 615 (711)
Q Consensus 548 ~~~~I~v~f~--gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~--------~~~~~~~d~~~l~~~~~~~~--~~ 615 (711)
..+||+++++ |+++++.|+++|.++|+..+++++++|+.++..... .+..++..++.++++..... +.
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 93 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGV 93 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4679999999 999999999999999999999999999998643210 11222333444554433211 11
Q ss_pred CCeEEEEEee-cCc-hhHHHH-HHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEe
Q 046591 616 KNVRYIKHSV-KEG-SETFHV-INSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQ 692 (711)
Q Consensus 616 ~~v~y~e~~v-~~g-~~i~~~-~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvq 692 (711)
..+.+ .... ++. +++.+. +++. ++||++||+|++ +++. . -+|++.+.++.+ ++||||||+
T Consensus 94 ~~~~~-~v~~~g~~~~~I~~~~a~~~--~~DlIV~G~~g~------~~~~----~-~~Gs~~~~vl~~---a~~PVlvV~ 156 (156)
T 3fg9_A 94 NQVEP-LVYEGGDVDDVILEQVIPEF--KPDLLVTGADTE------FPHS----K-IAGAIGPRLARK---APISVIVVR 156 (156)
T ss_dssp SSEEE-EEEECSCHHHHHHHTHHHHH--CCSEEEEETTCC------CTTS----S-SCSCHHHHHHHH---CSSEEEEEC
T ss_pred CceEE-EEEeCCCHHHHHHHHHHHhc--CCCEEEECCCCC------Cccc----e-eecchHHHHHHh---CCCCEEEeC
Confidence 11222 2222 232 355565 5554 899999999975 2332 2 599999999999 999999985
No 32
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.95 E-value=5.7e-10 Score=116.16 Aligned_cols=135 Identities=19% Similarity=0.051 Sum_probs=92.6
Q ss_pred ccceeEEEEeccCC-------hHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHH
Q 046591 387 AELRILACIYEENN-------VATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNA 459 (711)
Q Consensus 387 ~e~rILv~i~~~~~-------~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 459 (711)
...|||+|+|++++ ...+++.+..++ +..+.+++++|+++.+..... .+.. . ......++..+.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la-~~~~a~l~ll~v~~~~~~~~~--~~~~-~-----~~~~~~~~~~~~ 203 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIA-GLAKATLHVISAHPSPMLSSA--DPTF-Q-----LSETIEARYREA 203 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHH-HHTTCEEEEEEEEC-----------CH-H-----HHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHH-HHcCCeEEEEEEecCcccccc--Cchh-H-----HHHHHHHHHHHH
Confidence 35789999999999 899999998888 577889999999986432110 0000 0 000112334445
Q ss_pred HHHHHHhcCCceE-EEEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CC--chhHHHHHHHHhhcCCcceEEEeccC
Q 046591 460 FRQFEQQSSGSLS-LQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TN--SYVIKKITKKVLKMAPCSVGILFDRR 535 (711)
Q Consensus 460 f~~~~~~~~~~v~-v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~--~~~~gs~~~~Vl~~ApC~V~ilvdrg 535 (711)
++++.++. +++ ++..+.. ++..+.|++.|+++++||||||.|+ ++ +.++||++++|++++||||+++..++
T Consensus 204 l~~~~~~~--g~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 278 (290)
T 3mt0_A 204 CRTFQAEY--GFSDEQLHIEE---GPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKPDD 278 (290)
T ss_dssp HHHHHHHH--TCCTTTEEEEE---SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECCHH
T ss_pred HHHHHHHc--CCCcceEEEec---cCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEECCCC
Confidence 55555443 221 2222222 6899999999999999999999998 33 55689999999999999999985444
No 33
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.90 E-value=1.1e-09 Score=115.42 Aligned_cols=141 Identities=10% Similarity=0.039 Sum_probs=94.1
Q ss_pred cceeEEEEeccCC-------hHHHHHHHHhcCCCCC--CcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHH
Q 046591 388 ELRILACIYEENN-------VATIINVLGASIFPQR--PMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILN 458 (711)
Q Consensus 388 e~rILv~i~~~~~-------~~~~l~la~~~~~~~~--~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 458 (711)
..|||+|+|+++. ...+++.+..++ +.. +.+++++|+.+.+........+.... ........++..+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la-~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 231 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLS-HRIQKDPDVHLLSAYPVAPINIAIELPDFDP---NLYNNALRGQHLI 231 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHH-HHHCSSCCEEEEEEECCCSCSCCTTCTTCCH---HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHH-HhccCCCeEEEEEeecCcchhhhccCCcccH---HHHHHHHHHHHHH
Confidence 4789999999994 578888888777 455 67899999998654321100000000 0000011233445
Q ss_pred HHHHHHHhcCCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEecccc-CC--chhHHHHHHHHhhcCCcceEEEeccC
Q 046591 459 AFRQFEQQSSGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQK-TN--SYVIKKITKKVLKMAPCSVGILFDRR 535 (711)
Q Consensus 459 ~f~~~~~~~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~-~~--~~~~gs~~~~Vl~~ApC~V~ilvdrg 535 (711)
.++++.++.... .++..+.. ++..+.|++.|+++++||||||.|+ ++ +.++||++++|++++||||+++..++
T Consensus 232 ~l~~~~~~~~~~-~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 232 AMKELRQKFSIP-EEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHHHHTTCC-GGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHHHHHHhCCC-cccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCCC
Confidence 666665543211 12222222 6789999999999999999999998 44 56799999999999999999996555
Q ss_pred C
Q 046591 536 E 536 (711)
Q Consensus 536 ~ 536 (711)
.
T Consensus 308 ~ 308 (319)
T 3olq_A 308 F 308 (319)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.90 E-value=4.6e-09 Score=96.50 Aligned_cols=126 Identities=13% Similarity=0.026 Sum_probs=85.2
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeec-CC-CCc---------chhhhhhHHHHHHHHHhccCCCCC
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAV-NH-ATK---------DLIEEKNDLNLISGLRMSTMDSKN 617 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~-~~-~~~---------~~~~~~~d~~~l~~~~~~~~~~~~ 617 (711)
.++|+++++|+++++.|+++|.++|+..+++++++|+.++ .. ... .+..++..++.++++..+.. .+.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 80 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVD-YPI 80 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSS-SCC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcC-CCc
Confidence 3689999999999999999999999999999999999843 11 110 01112333455555544321 111
Q ss_pred eEEEEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEeee
Q 046591 618 VRYIKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQQ 694 (711)
Q Consensus 618 v~y~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq~ 694 (711)
. ......++. +++.+++++. ++||++||+| + + ++. .+|++.+.++.+ ++||||||+..
T Consensus 81 ~-~~~~~~g~~~~~I~~~a~~~--~~dliV~G~~-~--~----~~~------~lgs~~~~vl~~---~~~pVlvv~~~ 139 (141)
T 1jmv_A 81 S-EKLSGSGDLGQVLSDAIEQY--DVDLLVTGHH-Q--D----FWS------KLMSSTRQVMNT---IKIDMLVVPLR 139 (141)
T ss_dssp C-CEEEEEECHHHHHHHHHHHT--TCCEEEEEEC-C--C----CHH------HHHHHHHHHHTT---CCSEEEEEECC
T ss_pred e-EEEEecCCHHHHHHHHHHhc--CCCEEEEeCC-C--c----hhh------hhcchHHHHHhc---CCCCEEEeeCC
Confidence 1 111222332 4566777764 8999999998 5 1 221 269999999999 99999999864
No 35
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.89 E-value=8.2e-09 Score=98.74 Aligned_cols=131 Identities=9% Similarity=0.125 Sum_probs=80.4
Q ss_pred cceeEEEeccCCc---------chHHHHHHHHHHh-cC--CCeEEEEEEeeecCC--CC--------cch------hhhh
Q 046591 548 SAINVCVIFLGGP---------DDREALAYGARMT-GD--QNAMLTIIRFFAVNH--AT--------KDL------IEEK 599 (711)
Q Consensus 548 ~~~~I~v~f~gg~---------ddreAl~~a~rma-~~--~~~~ltvl~v~~~~~--~~--------~~~------~~~~ 599 (711)
..++|+++++|++ .++.|+++|.+++ +. .+++++++|+.++.. .. ..+ ..++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 3679999999999 8999999999986 54 699999999985421 10 000 1112
Q ss_pred hHHHHHHHHHhccCCCCCeEEEE-EeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHh
Q 046591 600 NDLNLISGLRMSTMDSKNVRYIK-HSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDIL 677 (711)
Q Consensus 600 ~d~~~l~~~~~~~~~~~~v~y~e-~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~l 677 (711)
..++.++++....... .+.+.. ...++. ++|.+++++. ++||||||+|++ +++.+| -+|++.+.+
T Consensus 84 ~~~~~l~~~~~~~~~~-g~~~~~~v~~G~~~~~I~~~a~~~--~~DLIVmG~~g~------~~~~~~----~~Gsva~~v 150 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHEI-GVGCEAWIKTGDPKDVICQEVKRV--RPDFLVVGSRGL------GRFQKV----FVGTVSAFC 150 (175)
T ss_dssp HHHHHHHHHHHHHHHH-TCEEEEEEEESCHHHHHHHHHHHH--CCSEEEEEECCC------C------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCceEEEEecCCHHHHHHHHHHHh--CCCEEEEeCCCC------Chhhhh----hcCchHHHH
Confidence 2334555554321111 122211 122222 3566666665 899999999975 344444 699999999
Q ss_pred hcCCCCCcccEEEEeee
Q 046591 678 ASSDFKSNASVMVMQQQ 694 (711)
Q Consensus 678 as~d~~~~~svLvvqq~ 694 (711)
+.+ ++|+||||+..
T Consensus 151 l~~---a~~pVlvv~~~ 164 (175)
T 2gm3_A 151 VKH---AECPVMTIKRN 164 (175)
T ss_dssp HHH---CSSCEEEEECC
T ss_pred HhC---CCCCEEEEcCC
Confidence 999 99999999864
No 36
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.83 E-value=8.6e-09 Score=107.34 Aligned_cols=118 Identities=11% Similarity=0.117 Sum_probs=91.5
Q ss_pred ccceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCchHHHHHHHHHHHHh
Q 046591 387 AELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTKIDFILNAFRQFEQQ 466 (711)
Q Consensus 387 ~e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ 466 (711)
...|||+|+|+++....+++.+..++ +..+.+++++|+.+... .++..+.+.++.+.
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la-~~~~~~l~ll~v~~~~~----------------------~~~~l~~~~~~l~~ 225 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVV-KKTGGELHIIHVSEDGD----------------------KTADLRVMEEVIGA 225 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHH-HHHTCEEEEEEECSSSC----------------------CHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHh-hhcCCEEEEEEEccCch----------------------HHHHHHHHHHHHHH
Confidence 34789999999999999999999888 56778999999987432 12233333333332
Q ss_pred cCCceEEEEEEEEccCCChhHHHHHhhhhcCccEEEeccccC-C--chhHHHHHHHHhhcCCcceEEEe
Q 046591 467 SSGSLSLQCFTATAPYDSMHEDICSMTFEKCTSLVIIPFQKT-N--SYVIKKITKKVLKMAPCSVGILF 532 (711)
Q Consensus 467 ~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~dlIimg~h~~-~--~~~~gs~~~~Vl~~ApC~V~ilv 532 (711)
.+++++..+.. ++..+.|++.|+++++||||||.++. + +.++||++++|++++||||+++.
T Consensus 226 --~~~~~~~~~~~---g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 226 --EGIEVHVHIES---GTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp --TTCCEEEEEEC---SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred --cCCcEEEEEec---CCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 23555554432 68999999999999999999999984 3 55699999999999999999984
No 37
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.79 E-value=1.9e-08 Score=91.96 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=77.9
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEee-ec---CC------CC-cc---hhhhhhHHHHHHHHHhc--c
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFF-AV---NH------AT-KD---LIEEKNDLNLISGLRMS--T 612 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~-~~---~~------~~-~~---~~~~~~d~~~l~~~~~~--~ 612 (711)
.++|+++++|+++++.|+++|.++|+..+++++++|+. ++ .. .. .. +..++..++.++++ .. .
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 82 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLT 82 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhh
Confidence 57999999999999999999999999999999999998 52 10 11 01 11122334445554 32 1
Q ss_pred CCCCCeEEEEEeecCc-hhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEE
Q 046591 613 MDSKNVRYIKHSVKEG-SETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVM 691 (711)
Q Consensus 613 ~~~~~v~y~e~~v~~g-~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvv 691 (711)
...+.+.+ +...++. +++.+++++. ++||++||+|++ ++.+.++.+ ++||||||
T Consensus 83 ~~~~~~~~-~~~~g~~~~~I~~~a~~~--~~dliV~G~~g~-------------------sv~~~vl~~---a~~PVlvv 137 (138)
T 1q77_A 83 GSTEIPGV-EYRIGPLSEEVKKFVEGK--GYELVVWACYPS-------------------AYLCKVIDG---LNLASLIV 137 (138)
T ss_dssp SCCCCCCE-EEECSCHHHHHHHHHTTS--CCSEEEECSCCG-------------------GGTHHHHHH---SSSEEEEC
T ss_pred ccCCcceE-EEEcCCHHHHHHHHHHhc--CCCEEEEeCCCC-------------------chHHHHHHh---CCCceEee
Confidence 11112222 1222222 3455555543 899999999863 677778888 88999998
Q ss_pred e
Q 046591 692 Q 692 (711)
Q Consensus 692 q 692 (711)
+
T Consensus 138 ~ 138 (138)
T 1q77_A 138 K 138 (138)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.71 E-value=2.6e-08 Score=102.03 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=85.7
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCC------------c--------chhhhhhHHHHHHHHH
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHAT------------K--------DLIEEKNDLNLISGLR 609 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~------------~--------~~~~~~~d~~~l~~~~ 609 (711)
++|+++++|++.++.|+++|.++|+..+++++++|+.++.... + .+..++..++.++++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999998753210 0 0111223344555554
Q ss_pred hccCCCCCeEEEEEeecCchhHHHHHHhhcCCccEEEEcccCCCCCcccc-CCCCCCCCCccchhhhHhhcCCCCCcccE
Q 046591 610 MSTMDSKNVRYIKHSVKEGSETFHVINSIGNDFELILTGRTHDYCSPVLS-GLVEWSESQELGVVGDILASSDFKSNASV 688 (711)
Q Consensus 610 ~~~~~~~~v~y~e~~v~~g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~-gl~~w~e~~eLG~igd~las~d~~~~~sv 688 (711)
......+ +.+ +..+..|.....+++. +.++||++||+|+. + ++.+| -+|++.+.++.+ ++|||
T Consensus 81 ~~~~~~g-~~~-~~~~~~g~~~~~I~~~-~~~~dliV~G~~g~------~~~~~~~----~~Gs~~~~v~~~---a~~PV 144 (268)
T 3ab8_A 81 QSALAAG-VAV-EAVLEEGVPHEAILRR-ARAADLLVLGRSGE------AHGDGFG----GLGSTADRVLRA---SPVPV 144 (268)
T ss_dssp HHHHHTT-CCE-EEEEEEECHHHHHHHH-HTTCSEEEEESSCT------TSCTTCC----SCCHHHHHHHHH---CSSCE
T ss_pred HHHHhCC-CCe-EEEEecCCHHHHHHhh-ccCCCEEEEeccCC------Ccccccc----ccchhHHHHHHh---CCCCE
Confidence 3211111 112 1122233212223333 56899999999975 2 34444 699999999999 99999
Q ss_pred EEEeeec
Q 046591 689 MVMQQQA 695 (711)
Q Consensus 689 Lvvqq~~ 695 (711)
|||+...
T Consensus 145 lvv~~~~ 151 (268)
T 3ab8_A 145 LLAPGEP 151 (268)
T ss_dssp EEECSSC
T ss_pred EEECCCC
Confidence 9998653
No 39
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.66 E-value=6.1e-08 Score=101.67 Aligned_cols=134 Identities=15% Similarity=0.185 Sum_probs=87.0
Q ss_pred CcceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCC------cc---hhhhhhHHHHHHHHH----hccC
Q 046591 547 RSAINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHAT------KD---LIEEKNDLNLISGLR----MSTM 613 (711)
Q Consensus 547 ~~~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~------~~---~~~~~~d~~~l~~~~----~~~~ 613 (711)
...++|+++++|+++++.|+++|.++|+..+++++++++.++.... .. +..++..++.+++.. ....
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 96 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASL 96 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3468999999999999999999999999999999999998743210 00 111222333444433 2200
Q ss_pred CCCCeEEEEEeecCchhHHHHHHhhcCCccEEEEcccCCCCCccccCCCCCCCCCccchhhhHhhcCCCCCcccEEEEee
Q 046591 614 DSKNVRYIKHSVKEGSETFHVINSIGNDFELILTGRTHDYCSPVLSGLVEWSESQELGVVGDILASSDFKSNASVMVMQQ 693 (711)
Q Consensus 614 ~~~~v~y~e~~v~~g~~i~~~~~~~~~~~DLiivG~~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~svLvvqq 693 (711)
....+.+. ..+..|. ..+.|.+.++++||+|||+++. .++.+| -+|+..+.++.+ ++|+||||+.
T Consensus 97 ~~~~~~~~-~~~~~g~-~~~~I~~~a~~~DliV~G~~g~------~~~~~~----~~Gs~~~~vl~~---~~~PVlvv~~ 161 (309)
T 3cis_A 97 RAGPPTVH-SEIVPAA-AVPTLVDMSKDAVLMVVGCLGS------GRWPGR----LLGSVSSGLLRH---AHCPVVIIHD 161 (309)
T ss_dssp SSCCSCEE-EEEESSC-HHHHHHHHGGGEEEEEEESSCT------TCCTTC----CSCHHHHHHHHH---CSSCEEEECT
T ss_pred cCCCceEE-EEEecCC-HHHHHHHHhcCCCEEEECCCCC------cccccc----ccCcHHHHHHHh---CCCCEEEEcC
Confidence 00112222 2233342 2223333345899999999975 234443 699999999999 9999999986
Q ss_pred ec
Q 046591 694 QA 695 (711)
Q Consensus 694 ~~ 695 (711)
..
T Consensus 162 ~~ 163 (309)
T 3cis_A 162 ED 163 (309)
T ss_dssp TC
T ss_pred Cc
Confidence 53
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.35 E-value=0.095 Score=54.87 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcch---hHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHhhhc
Q 046591 32 SVFESFGLIYITFVTSVRADLSIMTKSGR---LGIVIGIGSYLLPLIVTSLSTVIVNQFDPLDGELGESVQMVTGLESTI 108 (711)
Q Consensus 32 ~~la~~Gl~~~lF~~Gle~d~~~l~~~~~---~~~~i~~~~~~~p~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~~~s~T 108 (711)
+......+.+.||..|++++++.+++..+ ......+..+++--+++++++..+. .++.....+++++++=+.+
T Consensus 42 ~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~----l~~~~~~Glil~~~~P~~~ 117 (332)
T 3zux_A 42 GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN----LPAEIAVGVILVGCCPGGT 117 (332)
T ss_dssp GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhC----CChHHHHHHHHHhcCCchh
Confidence 34455788899999999999999985443 3333333444432234455554442 1111111112222222233
Q ss_pred cHHHHHHHHHhhccccChhHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 046591 109 SFYGILEILTDMKLLNSELGRLALSSSLTNTLLNMTLGTVLVVLSD 154 (711)
Q Consensus 109 s~~vv~~iL~el~l~~s~~G~lals~a~i~D~~~~~ll~~~~~~~~ 154 (711)
+..+.+ .+ .+.+. .++.+...++.+++.+.+-+...+..
T Consensus 118 ~s~v~t----~~--a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 118 ASNVMT----YL--ARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHH----HH--TTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HH--hCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333 32 23333 56778888888888877765555443
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.08 E-value=0.32 Score=49.06 Aligned_cols=218 Identities=11% Similarity=0.082 Sum_probs=133.7
Q ss_pred cceeEEEEeccCChHHHHHHHHhcCCCCCCcEEEEEEeecccCCCchhhhccccCCCCCCCCCCc-hHHHHHHHHHHHHh
Q 046591 388 ELRILACIYEENNVATIINVLGASIFPQRPMELHVLNLEEYVGHSLPLVISHRLDKMPSSSKPTK-IDFILNAFRQFEQQ 466 (711)
Q Consensus 388 e~rILv~i~~~~~~~~~l~la~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~f~~~~~~ 466 (711)
.-+||||+..|..-.++++++..+.. ....+.+.++. ++... .. .++ .+++++|-++
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~--~~G~ltv~~i~--p~~~~-----------------~~l~~q-l~~l~~~l~~ 77 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITY--PKGSVKLLGLA--GNTDK-----------------ENLLSQ-LPSISEGFQE 77 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHT--TTCEEEEEECC-----CT-----------------TCHHHH-HHHHHHHHHH
T ss_pred CCcEEEecCCchhhhhHHHHHHHhcc--CceeEEEEEEc--cCCCc-----------------cHHHHH-HHHHHHHHHh
Confidence 35799999999999999999999983 44567788874 21100 11 222 3666777654
Q ss_pred cCCceEEEEEEEEccCCChhHHHHHhhhhc-----CccEEEeccccC-C-chhHHHHHHHHhhcCCcceEEEeccCCccc
Q 046591 467 SSGSLSLQCFTATAPYDSMHEDICSMTFEK-----CTSLVIIPFQKT-N-SYVIKKITKKVLKMAPCSVGILFDRREFMN 539 (711)
Q Consensus 467 ~~~~v~v~~~~~vs~~~~~~~~I~~~A~e~-----~~dlIimg~h~~-~-~~~~gs~~~~Vl~~ApC~V~ilvdrg~~~~ 539 (711)
.++. .++.+-+..+.++++..+.+.. +.+-|+||+... + +.-+..+.++.. ++.-.|.++-+.... +
T Consensus 78 --r~v~--a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y~~~i~~~~-~~~~nVlil~~~~~~-~ 151 (294)
T 3g40_A 78 --EGVF--SSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIREIIRKAS-MYRMGVLLFSKHPQA-G 151 (294)
T ss_dssp --TTCE--EEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHHHHHHHHHH-HTTCEEEEEECCTTT-T
T ss_pred --CCce--eEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHHHHHHHHHH-HhCceEEEEecCCcc-C
Confidence 3333 3334444467889988887775 568999998763 2 445777776654 447888888543322 2
Q ss_pred cccccccCcceeEEEeccC--------C--cchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHH
Q 046591 540 SRHIFTHRSAINVCVIFLG--------G--PDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLR 609 (711)
Q Consensus 540 ~~~~~~~~~~~~I~v~f~g--------g--~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~ 609 (711)
+ . ..++|=+=.-| | .+-.-++-+|-.+.++.++++.+..+++. +.+++..+++++++.
T Consensus 152 f----g--~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~~a~~~l~~Lv 219 (294)
T 3g40_A 152 L----G--RQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQAAENFLQSLA 219 (294)
T ss_dssp T----T--TSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHHHHHHHHHHHH
T ss_pred C----C--CCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHHHHHHHHHHHH
Confidence 2 1 12455444222 1 34566888888888888999999999852 345666677777776
Q ss_pred hccCCCCCeEEEEEeecCchhHHHHHHhhcCCccEEEEcccCC
Q 046591 610 MSTMDSKNVRYIKHSVKEGSETFHVINSIGNDFELILTGRTHD 652 (711)
Q Consensus 610 ~~~~~~~~v~y~e~~v~~g~~i~~~~~~~~~~~DLiivG~~~~ 652 (711)
....-. ...+ .+. + +..+++++. .++||+++|-...
T Consensus 220 ~~~Ri~-a~~~--vv~--~-~F~~il~~s-~~ADL~flGl~~~ 255 (294)
T 3g40_A 220 ELARIP-NVKM--QVL--R-ENPIKSSKL-PFASLHIFSLDPN 255 (294)
T ss_dssp HHHTCC-SCEE--EEE--S-SCTTTSSSC-CCCSEEEEECCSS
T ss_pred HHhcCC-ceEE--Eec--C-chHHHHhhC-cCCCEEEEcCCCC
Confidence 554222 1212 222 2 133456664 6799999998653
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=78.45 E-value=3.6 Score=42.57 Aligned_cols=55 Identities=7% Similarity=-0.014 Sum_probs=40.3
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhc
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMS 611 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~ 611 (711)
.++++.|.||+|+--.|.++.+.....+..+.++++.+.-.+ ..+.++++++..+
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~-------~et~~~v~~~~~~ 101 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF-------QEMYRFRDQMVEE 101 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC-------HHHHHHHHHHHHT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC-------HHHHHHHHHHHHH
Confidence 379999999999999999999887655667788888765433 1234566666554
No 43
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=61.28 E-value=45 Score=31.66 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=35.6
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhc
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMS 611 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~ 611 (711)
.+|+|.|.||+|+--.+.++.+.. -++.++++.+.-.+ +.+.++++++..+
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~-------~e~~~~v~~~~~~ 95 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF-------PETYRFIDELTDK 95 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC-------HHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC-------HHHHHHHHHHHHH
Confidence 379999999999999898888874 24678888764322 1224566666554
No 44
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=59.93 E-value=13 Score=38.22 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=34.5
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeE-EEEEEeeec
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAM-LTIIRFFAV 588 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~-ltvl~v~~~ 588 (711)
..++++.+.||+|+--.+.++.+..+..+.+ ++.+++...
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g 64 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence 3589999999999999999998887777888 999998754
No 45
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=54.62 E-value=19 Score=38.77 Aligned_cols=97 Identities=14% Similarity=0.086 Sum_probs=59.6
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcC-CCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEee-c
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGD-QNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHSV-K 626 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~-~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v-~ 626 (711)
..+|++.+.||.|+--.+.++.++.+. .+.+++.+|+...-.. + .+.+.++++++..+.. -+ ....+..+ +
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~-~----s~~~~~~v~~~~~~lg-i~-~~v~~~~~~~ 85 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA-N----ADAWVTHCENVCQQWQ-VP-LVVERVQLAQ 85 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS-S----HHHHHHHHHHHHHHTT-CC-EEEECCCCCC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCc-c----cHHHHHHHHHHHHHcC-Cc-EEEEEecCCC
Confidence 358999999999999999999988877 8899999999754321 1 1233455555554431 11 11111111 1
Q ss_pred Cc---hhHH-----HHHHhhcCCccEEEEcccCC
Q 046591 627 EG---SETF-----HVINSIGNDFELILTGRTHD 652 (711)
Q Consensus 627 ~g---~~i~-----~~~~~~~~~~DLiivG~~~~ 652 (711)
.| ++.. .++.+...++|.++.|.|.+
T Consensus 86 ~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 86 EGLGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp SSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 11 1221 24445555799999998754
No 46
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=54.51 E-value=14 Score=37.71 Aligned_cols=95 Identities=12% Similarity=-0.034 Sum_probs=53.3
Q ss_pred eeEEEeccCCcchHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhc
Q 046591 550 INVCVIFLGGPDDREALAYGARMT-G-----------------DQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMS 611 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma-~-----------------~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~ 611 (711)
.++++.|.||+|+--.|.++.+.. + .++..+.++++.+...+ ....+|++++..+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f-------pet~~fv~~~~~~ 126 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF-------PTLENFVLETSER 126 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC-------HHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC-------HHHHHHHHHHHHH
Confidence 379999999999999888887753 1 12466888888765443 3344566666554
Q ss_pred cCCCCCeEE-EEEeecCc-hh-HHHHHHhhcCCccEEEEcccCCC
Q 046591 612 TMDSKNVRY-IKHSVKEG-SE-TFHVINSIGNDFELILTGRTHDY 653 (711)
Q Consensus 612 ~~~~~~v~y-~e~~v~~g-~~-i~~~~~~~~~~~DLiivG~~~~~ 653 (711)
.. -+.+.+ .+.....+ .+ ..+.++. ....+.+++|.+...
T Consensus 127 yg-l~l~v~~~~~~~~~~l~~~~~~~~k~-~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 127 YC-LSLYESQRQSGASVNMADAFRDFIKI-YPETEAIVIGIRHTD 169 (306)
T ss_dssp TT-EEEEECCC-----CCHHHHHHHHHHH-CTTCCEEECCCCCCS
T ss_pred cC-CCEEEEeCCccccccHHHHHHHHHhh-CCCCcEEEEEEeccc
Confidence 31 111111 00000111 11 2223332 235789999998764
No 47
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=52.53 E-value=80 Score=32.41 Aligned_cols=95 Identities=9% Similarity=-0.061 Sum_probs=52.4
Q ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHhhHHHHHHHhcccceec-ccC-chhhHHHHHHHHHHHHhHHHHHHHHHhhcCC
Q 046591 230 IILGVITPLIPPMGSLLTDKMEAFVWSVFLPCFLINSGKGVNLF-STT-LTGFLIVEFLIWVATTVKLFAIIIPSLYYKM 307 (711)
Q Consensus 230 f~~Gl~l~~~~~~~~~l~~~l~~~~~~~~~PlFF~~~G~~~d~~-l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~ 307 (711)
.++|...|+... . ++.. ....+.+-+...|++++.. +.. ...+.......+.-++...+.++..++.++.
T Consensus 28 ~~lg~~~P~~~~---~----~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFK---W----AGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTG---G----GGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhh---h----hHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467777776321 1 2233 2345667777788888887 542 1234444444555666677777777777777
Q ss_pred ChhHHHHHHH-HhhcchhHHHHHhhh
Q 046591 308 PFMDALSLGL-LLNCRGIYDIQIFSR 332 (711)
Q Consensus 308 ~~~~a~~lgl-~l~~kG~~~l~~~~~ 332 (711)
+...+.-+-+ ...|-|....+....
T Consensus 100 ~~~~~~Glil~~~~P~~~~s~v~t~~ 125 (332)
T 3zux_A 100 PAEIAVGVILVGCCPGGTASNVMTYL 125 (332)
T ss_dssp CHHHHHHHHHHHHSCCCTHHHHHHHH
T ss_pred ChHHHHHHHHHhcCCchhHHHHHHHH
Confidence 6543322222 234555555554443
No 48
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=52.00 E-value=14 Score=40.05 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=43.7
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhc
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMS 611 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~ 611 (711)
..++++.+.||.|+.-.+.++.++.+..+.+++.+|+...-.. .+.+.+.++++++..+
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg----~~s~~~~~~v~~~~~~ 76 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG----RESEEEMEFVKRFCVE 76 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT----HHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc----cccHHHHHHHHHHHHH
Confidence 3589999999999999999999998888899999999754320 1123345566666554
No 49
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=40.81 E-value=15 Score=36.26 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=25.9
Q ss_pred eccCCcchHHHHHHHHHHhcCCCe--EEEEEEeee
Q 046591 555 IFLGGPDDREALAYGARMTGDQNA--MLTIIRFFA 587 (711)
Q Consensus 555 ~f~gg~ddreAl~~a~rma~~~~~--~ltvl~v~~ 587 (711)
++.=.+.|.+|++.|.|+++. +. +++++-+-+
T Consensus 32 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~ 65 (252)
T 1efp_B 32 KMSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGV 65 (252)
T ss_dssp CEEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 333458999999999999987 66 899888764
No 50
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=39.90 E-value=33 Score=33.91 Aligned_cols=40 Identities=8% Similarity=0.024 Sum_probs=32.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecCCC
Q 046591 551 NVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVNHA 591 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~~~ 591 (711)
++++.|.||+|+--.|.++.+.... +..+.++++.+...+
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~ 82 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHF 82 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBC
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCC
Confidence 7999999999999999999888765 566788888765443
No 51
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=38.89 E-value=34 Score=33.86 Aligned_cols=33 Identities=12% Similarity=-0.016 Sum_probs=26.5
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCe--EEEEEEeee
Q 046591 554 VIFLGGPDDREALAYGARMTGDQNA--MLTIIRFFA 587 (711)
Q Consensus 554 v~f~gg~ddreAl~~a~rma~~~~~--~ltvl~v~~ 587 (711)
+++.=.+.|.+|++.|.|+.+. +. +++++-+-+
T Consensus 34 ~~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~ 68 (255)
T 1efv_B 34 VKHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGP 68 (255)
T ss_dssp CCEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEES
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 3444468999999999999987 66 899888764
No 52
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=37.53 E-value=41 Score=34.02 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=47.2
Q ss_pred ceeEEEeccCCcchHHHHHHHHHHhcCCC-eEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhccCCCCCeEEEEEeecC
Q 046591 549 AINVCVIFLGGPDDREALAYGARMTGDQN-AMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMSTMDSKNVRYIKHSVKE 627 (711)
Q Consensus 549 ~~~I~v~f~gg~ddreAl~~a~rma~~~~-~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~ 627 (711)
.+||++ .||-|- ..++.+.++++ .+++++-+.+ .--+..++++.+.....-+..++ +..++|
T Consensus 84 pk~VLI--iGgGdG----~~~revlk~~~v~~v~~VEID~--------~Vv~~a~~~lp~~~~~~~~dpRv---~v~~~D 146 (294)
T 3o4f_A 84 AKHVLI--IGGGDG----AMLREVTRHKNVESITMVEIDA--------GVVSFCRQYLPNHNAGSYDDPRF---KLVIDD 146 (294)
T ss_dssp CCEEEE--ESCTTS----HHHHHHHTCTTCCEEEEEESCH--------HHHHHHHHHCHHHHTTGGGCTTE---EEEESC
T ss_pred CCeEEE--ECCCch----HHHHHHHHcCCcceEEEEcCCH--------HHHHHHHhcCccccccccCCCcE---EEEech
Confidence 457544 454442 33455667765 5677776432 12234444544433222223454 567788
Q ss_pred chhHHHHHHhhcCCccEEEEcccCC
Q 046591 628 GSETFHVINSIGNDFELILTGRTHD 652 (711)
Q Consensus 628 g~~i~~~~~~~~~~~DLiivG~~~~ 652 (711)
|-+ ++++..+.||+||+=....
T Consensus 147 g~~---~l~~~~~~yDvIi~D~~dp 168 (294)
T 3o4f_A 147 GVN---FVNQTSQTFDVIISDCTDP 168 (294)
T ss_dssp TTT---TTSCSSCCEEEEEESCCCC
T ss_pred HHH---HHhhccccCCEEEEeCCCc
Confidence 854 6666666899999976643
No 53
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=37.48 E-value=27 Score=34.80 Aligned_cols=34 Identities=6% Similarity=0.073 Sum_probs=27.2
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCe--EEEEEEeee
Q 046591 554 VIFLGGPDDREALAYGARMTGDQNA--MLTIIRFFA 587 (711)
Q Consensus 554 v~f~gg~ddreAl~~a~rma~~~~~--~ltvl~v~~ 587 (711)
+...=.+.|.+|++.|.|+++..+. +++++-+-+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~ 66 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGP 66 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESC
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCc
Confidence 4444569999999999999976666 899888764
No 54
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=36.95 E-value=8.5 Score=25.23 Aligned_cols=28 Identities=7% Similarity=0.227 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHhhhccHHHHHHHHHhhcc
Q 046591 94 LGESVQMVTGLESTISFYGILEILTDMKL 122 (711)
Q Consensus 94 ~~~~~~~l~~~~s~Ts~~vv~~iL~el~l 122 (711)
|..+ +++|+++|.|.+..+..++++++.
T Consensus 3 ~~~~-llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 3 KKDN-LLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCC-CTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHccCCChHHHHHHHHHcCC
Confidence 3456 888999999999999999999875
No 55
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=33.38 E-value=38 Score=34.42 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=50.8
Q ss_pred eEEEeccCCcchHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHhcc
Q 046591 551 NVCVIFLGGPDDREALAYGARMT-G-----------------DQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRMST 612 (711)
Q Consensus 551 ~I~v~f~gg~ddreAl~~a~rma-~-----------------~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~~~ 612 (711)
++++.|.||+|+--.|.++.+.- + .+...+.++++-+...+.++ .+|++++..+.
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET-------~ef~d~~~~~y 132 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTL-------ENFIEETSLRY 132 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHH-------HHHHHHHHHHT
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHH-------HHHHHHHHHHh
Confidence 69999999999999999887742 1 12256888888776665332 24555555543
Q ss_pred CCCCCeEEEEEeecCc---hhHHHHHHhhcCCccEEEEcccCC
Q 046591 613 MDSKNVRYIKHSVKEG---SETFHVINSIGNDFELILTGRTHD 652 (711)
Q Consensus 613 ~~~~~v~y~e~~v~~g---~~i~~~~~~~~~~~DLiivG~~~~ 652 (711)
. -+.+.| ..+.+ .+-..-+++....+|.++.|.+..
T Consensus 133 g-L~L~v~---~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 133 S-LSLYES---DRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp T-EEEEEC---CTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred C-CcEEEe---CCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 1 111111 11111 112223334334699999999976
No 56
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=29.53 E-value=32 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred CceEEEEEEEEccCCChhHHHHHhhhhcCcc
Q 046591 469 GSLSLQCFTATAPYDSMHEDICSMTFEKCTS 499 (711)
Q Consensus 469 ~~v~v~~~~~vs~~~~~~~~I~~~A~e~~~d 499 (711)
..|+.+-. ++| +|-++|..+|.|++.|
T Consensus 10 kkvslhll--vdp--dmkdeiikyaqekdfd 36 (54)
T 3gxq_A 10 KKVSLHLL--VDP--DMKDEIIKYAQEKDFD 36 (54)
T ss_dssp CCEEEEEE--ECH--HHHHHHHHHHHHHSTT
T ss_pred ceeEEEEe--eCC--chhHHHHHHHHHccch
Confidence 34565554 466 8999999999999886
No 57
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=26.31 E-value=2 Score=28.20 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.2
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhcCCC
Q 046591 213 CSYFVSESMGLIGFWGPIILGVITPLI 239 (711)
Q Consensus 213 ~~~~~~~~~g~~~~lGaf~~Gl~l~~~ 239 (711)
+++.++|.+++|++++.+..|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 356678999999999999999998764
No 58
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=25.55 E-value=1.5e+02 Score=27.80 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=28.6
Q ss_pred eeEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEeeecC
Q 046591 550 INVCVIFLGGPDDREALAYGARMTGDQNAMLTIIRFFAVN 589 (711)
Q Consensus 550 ~~I~v~f~gg~ddreAl~~a~rma~~~~~~ltvl~v~~~~ 589 (711)
+++++.+.||.|+--++.++.+ .+.+++.+++....
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFGV 42 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECSS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCCC
Confidence 5899999999999888876654 46788888887543
No 59
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.01 E-value=1.3e+02 Score=29.79 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=33.6
Q ss_pred eeEEEeccCCc---chHHHHHHHHHHhcCCCeEEEEEEeeecCCCCcchhhhhhHHHHHHHHHh
Q 046591 550 INVCVIFLGGP---DDREALAYGARMTGDQNAMLTIIRFFAVNHATKDLIEEKNDLNLISGLRM 610 (711)
Q Consensus 550 ~~I~v~f~gg~---ddreAl~~a~rma~~~~~~ltvl~v~~~~~~~~~~~~~~~d~~~l~~~~~ 610 (711)
+|| ++|.+|+ |+.+..++|+++.++ ++.++++-|-+.+. ..+..++|.+....
T Consensus 108 ~rI-Ilf~ds~~~~~~~~l~~lak~lkk~-gI~v~vIgFG~~~~------n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 108 QRI-VAFVCSPISDSRDELIRLAKTLKKN-NVAVDIINFGEIEQ------NTELLDEFIAAVNN 163 (268)
T ss_dssp EEE-EEEECSCCSSCHHHHHHHHHHHHHH-TEEEEEEEESSCCS------SCCHHHHHHHHHCS
T ss_pred eEE-EEEECCCCCCCHHHHHHHHHHHHHc-CCEEEEEEeCCCcc------chHHHHHHHHHhcC
Confidence 455 4454443 556677777777765 99999999975332 23455666665543
Done!