BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046592
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/546 (45%), Positives = 361/546 (66%), Gaps = 17/546 (3%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGVDLKDLACLPISLGWYGEKEENRRLIKVQCYSM 60
+++++ + + PL F ++ +RG++L ++ C ++GW+GE E+N R +++ C+
Sbjct: 103 LSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGE-EKNVRTVRLDCFMK 161
Query: 61 KDTANFYMRPIEGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQ----GLHQRM 116
+ T N Y+RPI G+TI+ D+D +++E D+ +P A NT+Y+ S Q G Q
Sbjct: 162 ESTVNIYVRPITGITIVADLDLMKIVEYHDRDIE-AVPTAENTEYQVSKQSPPFGPKQ-- 218
Query: 117 KLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVM 176
+ ++ QP+GP F I + H V WANW+FH+ D RAG ++S A + D + + R V+
Sbjct: 219 ---HSLTSHQPQGPGFQI-NGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVL 274
Query: 177 YKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAAD 236
YKG+ SELFVPY DPT+ +YFKT+ D+GE+GFGL + L P DCP +A ++D +A+
Sbjct: 275 YKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSAN 334
Query: 237 GTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDW 296
GTP + N IC+FE Y G+I WRH E+ I I+E R +V L+VR +V N D ++DW
Sbjct: 335 GTPILLKNAICVFEQY-GNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNXDNVIDW 393
Query: 297 EFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYL 356
EF+ G I+ + LSGIL +KGT ++ ++I E+L G L+S N IG+ HDHF +YL
Sbjct: 394 EFKASGSIKPSIALSGILEIKGTNIKHKDEIK---EDLHGKLVSANSIGIYHDHFYIYYL 450
Query: 357 DMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVI 416
D DIDG+ NSF K ++K G S R+SY + AKTE DA+I + L PAE V+
Sbjct: 451 DFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGL-APAELVVV 509
Query: 417 NPTKKTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFV 476
NP KT VGN VGY+++P A LL +D PQ RGAFTN +WVT YN +E+WAGGL+V
Sbjct: 510 NPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYV 569
Query: 477 YQSKGEDTLAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFE 536
S+G+DTLAVW+ ++R I NKDIV+W+ +G HH+P QEDFPIMP +S+SF+L+P NFFE
Sbjct: 570 DHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFE 629
Query: 537 SNPILR 542
NP+L+
Sbjct: 630 RNPVLK 635
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/546 (45%), Positives = 361/546 (66%), Gaps = 17/546 (3%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGVDLKDLACLPISLGWYGEKEENRRLIKVQCYSM 60
+++++ + + PL F ++ +RG++L ++ C ++GW+GE E+N R +++ C+
Sbjct: 98 LSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGE-EKNVRTVRLDCFMK 156
Query: 61 KDTANFYMRPIEGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQ----GLHQRM 116
+ T N Y+RPI G+TI+ D+D +++E D+ +P A NT+Y+ S Q G Q
Sbjct: 157 ESTVNIYVRPITGITIVADLDLMKIVEYHDRDIE-AVPTAENTEYQVSKQSPPFGPKQ-- 213
Query: 117 KLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVM 176
+ ++ QP+GP F I + H V WANW+FH+ D RAG ++S A + D + + R V+
Sbjct: 214 ---HSLTSHQPQGPGFQI-NGHSVSWANWKFHIGFDVRAGIVISLASIYDLEKHKSRRVL 269
Query: 177 YKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAAD 236
YKG+ SELFVPY DPT+ +YFKT+ D+GE+GFGL + L P DCP +A ++D +A+
Sbjct: 270 YKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSAN 329
Query: 237 GTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDW 296
GTP + N IC+FE Y G+I WRH E+ I I+E R +V L+VR +V N D ++DW
Sbjct: 330 GTPILLKNAICVFEQY-GNIMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNXDNVIDW 388
Query: 297 EFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYL 356
EF+ G I+ + LSGIL +KGT ++ ++I E+L G L+S N IG+ HDHF +YL
Sbjct: 389 EFKASGSIKPSIALSGILEIKGTNIKHKDEIK---EDLHGKLVSANSIGIYHDHFYIYYL 445
Query: 357 DMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVI 416
D DIDG+ NSF K ++K G S R+SY + AKTE DA+I + L PAE V+
Sbjct: 446 DFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGL-APAELVVV 504
Query: 417 NPTKKTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFV 476
NP KT VGN VGY+++P A LL +D PQ RGAFTN +WVT YN +E+WAGGL+V
Sbjct: 505 NPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYV 564
Query: 477 YQSKGEDTLAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFE 536
S+G+DTLAVW+ ++R I NKDIV+W+ +G HH+P QEDFPIMP +S+SF+L+P NFFE
Sbjct: 565 DHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFE 624
Query: 537 SNPILR 542
NP+L+
Sbjct: 625 RNPVLK 630
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 298 bits (763), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 178/537 (33%), Positives = 285/537 (53%), Gaps = 31/537 (5%)
Query: 17 EEFNRTILERGV-DLKDLACLPISLGWYGEKE---ENRRLIKVQCYSMKDTANFYMRPIE 72
EEF + +RG+ D K + P+++G++ K+ ++ RL+KV Y N++ PIE
Sbjct: 203 EEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIE 262
Query: 73 GLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSF 132
L ++D++ K++++I ++G +P+P G + + P+ + +PEG ++
Sbjct: 263 NLVAVVDLEQKKIVKI-EEGPVVPVPMTAR-----PFDGRDRVAPAVKPMQIIEPEGKNY 316
Query: 133 VIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPT 192
I + ++ W NW+FHL + R G ++S D +G R VMY+G + VPY DP
Sbjct: 317 TITGD-MIHWRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPD 373
Query: 193 DAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESY 252
WYFK Y+D+G+YG G P+ D P NA ++ G P I +FE Y
Sbjct: 374 IGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERY 433
Query: 253 AGDIGWRHAESPITGMGIKEVRP-KVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLS 311
AG ++H E MG V + LVVR ++V NYDYI DW F +G I I G +
Sbjct: 434 AGP-EYKHQE-----MGQPNVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGAT 487
Query: 312 GILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVN 371
GI VKG + M+ + + + +GTL+ N++G H H F LD+D+DG +NS V ++
Sbjct: 488 GIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD 547
Query: 372 IKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVI-NPTKKTRVGNPVGY 430
+ + G PR S ++ ++ E+DA K +DP ++ NP K+ R+GNPV Y
Sbjct: 548 PVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQK---FDPGTIRLLSNPNKENRMGNPVSY 603
Query: 431 KVVP--GGTAASLLDREDPPQK----RGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDT 484
+++P GGT + P + R +F + Q+WVT Y+ E++ G + +S +
Sbjct: 604 QIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTG 663
Query: 485 LAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 541
L +S + S++N D V+W T G H+ E++PIMPT LKP NFF+ P L
Sbjct: 664 LGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 295 bits (754), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 177/537 (32%), Positives = 284/537 (52%), Gaps = 31/537 (5%)
Query: 17 EEFNRTILERGV-DLKDLACLPISLGWYGEKE---ENRRLIKVQCYSMKDTANFYMRPIE 72
EEF + +RG+ D K + P+++G++ K+ ++ RL+KV Y N++ PIE
Sbjct: 203 EEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIE 262
Query: 73 GLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSF 132
L ++D++ K++++I ++G +P+P G + + P+ + +PEG ++
Sbjct: 263 NLVAVVDLEQKKIVKI-EEGPVVPVPMTAR-----PFDGRDRVAPAVKPMQIIEPEGKNY 316
Query: 133 VIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPT 192
I + ++ W NW+FHL + R G ++S D +G R VMY+G + VPY DP
Sbjct: 317 TITGD-MIHWRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPD 373
Query: 193 DAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESY 252
WYFK Y+D+G+YG G P+ D P NA ++ G P I +FE Y
Sbjct: 374 IGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERY 433
Query: 253 AGDIGWRHAESPITGMGIKEVRP-KVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLS 311
AG ++H E MG V + LVVR ++V N DYI DW F +G I I G +
Sbjct: 434 AGP-EYKHQE-----MGQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDAGAT 487
Query: 312 GILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVN 371
GI VKG + M+ + + + +GTL+ N++G H H F LD+D+DG +NS V ++
Sbjct: 488 GIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD 547
Query: 372 IKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVI-NPTKKTRVGNPVGY 430
+ + G PR S ++ ++ E+DA K +DP ++ NP K+ R+GNPV Y
Sbjct: 548 PVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQK---FDPGTIRLLSNPNKENRMGNPVSY 603
Query: 431 KVVP--GGTAASLLDREDPPQK----RGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDT 484
+++P GGT + P + R +F + Q+WVT Y+ E++ G + +S +
Sbjct: 604 QIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTG 663
Query: 485 LAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 541
L +S + S++N D V+W T G H+ E++PIMPT LKP NFF+ P L
Sbjct: 664 LGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 293 bits (751), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 176/537 (32%), Positives = 284/537 (52%), Gaps = 31/537 (5%)
Query: 17 EEFNRTILERGV-DLKDLACLPISLGWYGEKE---ENRRLIKVQCYSMKDTANFYMRPIE 72
EEF + +RG+ D K + P+++G++ K+ ++ RL+KV Y N++ PIE
Sbjct: 203 EEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIE 262
Query: 73 GLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSF 132
L ++D++ K++++I ++G +P+P G + + P+ + +PEG ++
Sbjct: 263 NLVAVVDLEQKKIVKI-EEGPVVPVPMTAR-----PFDGRDRVAPAVKPMQIIEPEGKNY 316
Query: 133 VIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPT 192
I + ++ W NW+FHL + R G ++S D +G R VMY+G + VP+ DP
Sbjct: 317 TITGD-MIHWRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPFGDPD 373
Query: 193 DAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESY 252
WYFK Y+D+G+YG G P+ D P NA ++ G P I +FE Y
Sbjct: 374 IGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERY 433
Query: 253 AGDIGWRHAESPITGMGIKEVRP-KVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLS 311
AG ++H E MG V + LVVR ++V N DYI DW F +G I I G +
Sbjct: 434 AGP-EYKHQE-----MGQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDAGAT 487
Query: 312 GILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVN 371
GI VKG + M+ + + + +GTL+ N++G H H F LD+D+DG +NS V ++
Sbjct: 488 GIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD 547
Query: 372 IKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVI-NPTKKTRVGNPVGY 430
+ + G PR S ++ ++ E+DA K +DP ++ NP K+ R+GNPV Y
Sbjct: 548 PVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQK---FDPGTIRLLSNPNKENRMGNPVSY 603
Query: 431 KVVP--GGTAASLLDREDPPQK----RGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDT 484
+++P GGT + P + R +F + Q+WVT Y+ E++ G + +S +
Sbjct: 604 QIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTG 663
Query: 485 LAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 541
L +S + S++N D V+W T G H+ E++PIMPT LKP NFF+ P L
Sbjct: 664 LGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 720
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/537 (32%), Positives = 284/537 (52%), Gaps = 31/537 (5%)
Query: 17 EEFNRTILERGV-DLKDLACLPISLGWYGEKE---ENRRLIKVQCYSMKDTANFYMRPIE 72
EEF + +RG+ D K + P+++G++ K+ ++ RL+KV Y N++ PIE
Sbjct: 198 EEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIE 257
Query: 73 GLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSF 132
L ++D++ K++++I ++G +P+P G + + P+ + +PEG ++
Sbjct: 258 NLVAVVDLEQKKIVKI-EEGPVVPVPMTAR-----PFDGRDRVAPAVKPMQIIEPEGKNY 311
Query: 133 VIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPT 192
I + ++ W NW+FHL + R G ++S D +G R VMY+G + VPY DP
Sbjct: 312 TITGD-MIHWRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPD 368
Query: 193 DAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESY 252
WYFK Y+++G+YG G P+ D P NA ++ G P I +FE Y
Sbjct: 369 IGWYFKAYLESGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERY 428
Query: 253 AGDIGWRHAESPITGMGIKEVRP-KVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLS 311
AG ++H E MG V + LVVR ++V N DYI DW F +G I I G +
Sbjct: 429 AGP-EYKHQE-----MGQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDAGAT 482
Query: 312 GILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVN 371
GI VKG + M+ + + + +GTL+ N++G H H F LD+D+DG +NS V ++
Sbjct: 483 GIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD 542
Query: 372 IKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVI-NPTKKTRVGNPVGY 430
+ + G PR S ++ ++ E+DA K +DP ++ NP K+ R+GNPV Y
Sbjct: 543 PVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQK---FDPGTIRLLSNPNKENRMGNPVSY 598
Query: 431 KVVP--GGTAASLLDREDPPQK----RGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDT 484
+++P GGT + P + R +F + Q+WVT Y+ E++ G + +S +
Sbjct: 599 QIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTG 658
Query: 485 LAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 541
L +S + S++N D V+W T G H+ E++PIMPT LKP NFF+ P L
Sbjct: 659 LGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/537 (32%), Positives = 284/537 (52%), Gaps = 31/537 (5%)
Query: 17 EEFNRTILERGV-DLKDLACLPISLGWYGEKE---ENRRLIKVQCYSMKDTANFYMRPIE 72
EEF + +RG+ D K + P+++G++ K+ ++ RL+KV Y N++ PIE
Sbjct: 198 EEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIE 257
Query: 73 GLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSF 132
L ++D++ K++++I ++G +P+P G + + P+ + +PEG ++
Sbjct: 258 NLVAVVDLEQKKIVKI-EEGPVVPVPMTAR-----PFDGRDRVAPAVKPMQIIEPEGKNY 311
Query: 133 VIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPT 192
I + ++ W NW+FHL + R G ++S D +G R VMY+G + VPY DP
Sbjct: 312 TITGD-MIHWRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPD 368
Query: 193 DAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESY 252
WYFK Y+++G+YG G P+ D P NA ++ G P I +FE Y
Sbjct: 369 IGWYFKAYLNSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERY 428
Query: 253 AGDIGWRHAESPITGMGIKEVRP-KVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLS 311
AG ++H E MG V + LVVR ++V N DYI DW F +G I I G +
Sbjct: 429 AGP-EYKHQE-----MGQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDAGAT 482
Query: 312 GILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVN 371
GI VKG + M+ + + + +GTL+ N++G H H F LD+D+DG +NS V ++
Sbjct: 483 GIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD 542
Query: 372 IKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVI-NPTKKTRVGNPVGY 430
+ + G PR S ++ ++ E+DA K +DP ++ NP K+ R+GNPV Y
Sbjct: 543 PVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQK---FDPGTIRLLSNPNKENRMGNPVSY 598
Query: 431 KVVP--GGTAASLLDREDPPQK----RGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDT 484
+++P GGT + P + R +F + Q+WVT Y+ E++ G + +S +
Sbjct: 599 QIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTG 658
Query: 485 LAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 541
L +S + S++N D V+W T G H+ E++PIMPT LKP NFF+ P L
Sbjct: 659 LGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/537 (32%), Positives = 283/537 (52%), Gaps = 31/537 (5%)
Query: 17 EEFNRTILERGV-DLKDLACLPISLGWYGEKE---ENRRLIKVQCYSMKDTANFYMRPIE 72
EEF + +RG+ D K + P+++G++ K+ ++ RL+KV Y N++ PIE
Sbjct: 198 EEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIE 257
Query: 73 GLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSF 132
L ++D++ K++++I ++G +P+P G + + P+ + +PEG ++
Sbjct: 258 NLVAVVDLEQKKIVKI-EEGPVVPVPMTAR-----PFDGRDRVAPAVKPMQIIEPEGKNY 311
Query: 133 VIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPT 192
I + ++ W NW+FHL + R G ++S D +G R VMY+G + VPY DP
Sbjct: 312 TITGD-MIHWRNWDFHLSMNSRVGPMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPD 368
Query: 193 DAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESY 252
WYFK Y+ +G+YG G P+ D P NA ++ G P I +FE Y
Sbjct: 369 IGWYFKAYLASGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERY 428
Query: 253 AGDIGWRHAESPITGMGIKEVRP-KVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLS 311
AG ++H E MG V + LVVR ++V N DYI DW F +G I I G +
Sbjct: 429 AGP-EYKHQE-----MGQPNVSTERRELVVRWISTVGNXDYIFDWIFHENGTIGIDAGAT 482
Query: 312 GILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVN 371
GI VKG + M+ + + + +GTL+ N++G H H F LD+D+DG +NS V ++
Sbjct: 483 GIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMD 542
Query: 372 IKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVI-NPTKKTRVGNPVGY 430
+ + G PR S ++ ++ E+DA K +DP ++ NP K+ R+GNPV Y
Sbjct: 543 PVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQK---FDPGTIRLLSNPNKENRMGNPVSY 598
Query: 431 KVVP--GGTAASLLDREDPPQK----RGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDT 484
+++P GGT + P + R +F + Q+WVT Y+ E++ G + +S +
Sbjct: 599 QIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTG 658
Query: 485 LAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPIL 541
L +S + S++N D V+W T G H+ E++PIMPT LKP NFF+ P L
Sbjct: 659 LGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 715
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 159/546 (29%), Positives = 248/546 (45%), Gaps = 27/546 (4%)
Query: 16 DEEFNRTILERGVDLKDLACLPISLGWYGEKEE-NRRLIKVQCYSM---KDTANFYMRPI 71
DE + + + R +D+ + P+S G + EE RR+++ + +D+A + P+
Sbjct: 115 DERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSA--WAHPV 172
Query: 72 EGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLIN-PISLEQPEGP 130
+GL +D+ +KEV + D G P+P Y+ L ++ PIS+ QPEGP
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGV-FPVPAEHGN---YTDPELTGPLRTTQKPISITQPEGP 228
Query: 131 SFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMD 190
SF + + ++W W + D R G ++ RD D +R ++ + +E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGD 286
Query: 191 PTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFE 250
P+ ++ Y D GEY G A L+ DC + Y+ V A G P N IC+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 251 SYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGL 310
G + +H++ GI R +V+ ++ NYDY W DG I +
Sbjct: 347 EDWGILA-KHSD---LWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKA 402
Query: 311 SGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKV 370
+G++ + IS A L H H + LDM IDG N +
Sbjct: 403 TGVVFTSAFPEGGSDNISQLAPGLGAPF---------HQHIFSARLDMAIDGFTNRVEEE 453
Query: 371 NIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGY 430
++ RQ PG R + R V E +A + + + NP K R+ PVGY
Sbjct: 454 DVVRQTMGPGNE-RGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGY 512
Query: 431 KVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDTLAVWSD 490
K+ L D +R AF +WVT Y + E++ G FV Q G L +
Sbjct: 513 KLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIA 572
Query: 491 RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKD 550
+DR I+ +DIV+W+T G H P ED+PIMP + F L+P FF+ +P+L +P N +
Sbjct: 573 QDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQS 632
Query: 551 LPVCKA 556
C
Sbjct: 633 GSHCHG 638
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 158/547 (28%), Positives = 248/547 (45%), Gaps = 27/547 (4%)
Query: 16 DEEFNRTILERGVDLKDLACLPISLGWYGEKEE-NRRLIKVQCYSM---KDTANFYMRPI 71
DE + + + R +D+ + P+S G + EE RR+++ + +D+A + P+
Sbjct: 113 DERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSA--WAHPV 170
Query: 72 EGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLIN-PISLEQPEGP 130
+GL +D+ +KEV + D G P+P Y+ L ++ PIS+ QPEGP
Sbjct: 171 DGLVAYVDVVSKEVTRVIDTGV-FPVPAEHGN---YTDPELTGPLRTTQKPISITQPEGP 226
Query: 131 SFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMD 190
SF + + ++W W + D R G ++ RD D +R ++ + +E+ VPY D
Sbjct: 227 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGD 284
Query: 191 PTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFE 250
P+ ++ Y D GEY G A L+ DC + Y+ V A G P N IC+ E
Sbjct: 285 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 344
Query: 251 SYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGL 310
G + +H++ GI R +V+ ++ N DY W DG I +
Sbjct: 345 EDWGILA-KHSD---LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 400
Query: 311 SGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKV 370
+G++ + IS A L H H + LDM IDG N +
Sbjct: 401 TGVVFTSAFPEGGSDNISQLAPGLGAPF---------HQHIFSARLDMAIDGFTNRVEEE 451
Query: 371 NIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGY 430
++ RQ PG R + R V E +A + + + NP K R+ PVGY
Sbjct: 452 DVVRQTMGPGNE-RGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGY 510
Query: 431 KVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDTLAVWSD 490
K+ L D +R AF +WVT Y + E++ G FV Q G L +
Sbjct: 511 KLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIA 570
Query: 491 RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKD 550
+DR I+ +DIV+W+T G H P ED+PIMP + F L+P FF+ +P+L +P N +
Sbjct: 571 QDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQS 630
Query: 551 LPVCKAA 557
C +
Sbjct: 631 GSHCHGS 637
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 233 bits (595), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 158/546 (28%), Positives = 247/546 (45%), Gaps = 27/546 (4%)
Query: 16 DEEFNRTILERGVDLKDLACLPISLGWYGEKEE-NRRLIKVQCYSM---KDTANFYMRPI 71
DE + + + R +D+ + P+S G + EE RR+++ + +D+A + P+
Sbjct: 115 DERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSA--WAHPV 172
Query: 72 EGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLIN-PISLEQPEGP 130
+GL +D+ +KEV + D G P+P Y+ L ++ PIS+ QPEGP
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGV-FPVPAEHGN---YTDPELTGPLRTTQKPISITQPEGP 228
Query: 131 SFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMD 190
SF + + ++W W + D R G ++ RD D +R ++ + +E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGD 286
Query: 191 PTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFE 250
P+ ++ Y D GEY G A L+ DC + Y+ V A G P N IC+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 251 SYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGL 310
G + +H++ GI R +V+ ++ N DY W DG I +
Sbjct: 347 EDWGILA-KHSD---LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 311 SGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKV 370
+G++ + IS A L H H + LDM IDG N +
Sbjct: 403 TGVVFTSAFPEGGSDNISQLAPGLGAPF---------HQHIFSARLDMAIDGFTNRVEEE 453
Query: 371 NIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGY 430
++ RQ PG R + R V E +A + + + NP K R+ PVGY
Sbjct: 454 DVVRQTMGPGNE-RGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGY 512
Query: 431 KVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDTLAVWSD 490
K+ L D +R AF +WVT Y + E++ G FV Q G L +
Sbjct: 513 KLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIA 572
Query: 491 RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKD 550
+DR I+ +DIV+W+T G H P ED+PIMP + F L+P FF+ +P+L +P N +
Sbjct: 573 QDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQS 632
Query: 551 LPVCKA 556
C
Sbjct: 633 GSHCHG 638
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 158/546 (28%), Positives = 247/546 (45%), Gaps = 27/546 (4%)
Query: 16 DEEFNRTILERGVDLKDLACLPISLGWYGEKEE-NRRLIKVQCYSM---KDTANFYMRPI 71
DE + + + R +D+ + P+S G + EE RR+++ + +D+A + P+
Sbjct: 115 DERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSA--WAHPV 172
Query: 72 EGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLIN-PISLEQPEGP 130
+GL +D+ +KEV + D G P+P Y+ L ++ PIS+ QPEGP
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGV-FPVPAEHGN---YTDPELTGPLRTTQKPISITQPEGP 228
Query: 131 SFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMD 190
SF + + ++W W + D R G ++ RD D +R ++ + +E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGD 286
Query: 191 PTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFE 250
P+ ++ Y D GEY G A L+ DC + Y+ V A G P N IC+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 251 SYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGL 310
G + +H++ GI R +V+ ++ NYDY W DG I +
Sbjct: 347 EDWGILA-KHSD---LWSGINYTRRNRRMVISFFTTIGNYDYGFYWYLYLDGTIEFEAKA 402
Query: 311 SGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKV 370
+G++ + IS A L H + LDM IDG N +
Sbjct: 403 TGVVFTSAFPEGGSDNISQLAPGLGAPF---------HQAIFSARLDMAIDGFTNRVEEE 453
Query: 371 NIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGY 430
++ RQ PG R + R V E +A + + + NP K R+ PVGY
Sbjct: 454 DVVRQTMGPGNE-RGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGY 512
Query: 431 KVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDTLAVWSD 490
K+ L D +R AF +WVT Y + E++ G FV Q G L +
Sbjct: 513 KLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIA 572
Query: 491 RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKD 550
+DR I+ +DIV+W+T G H P ED+PIMP + F L+P FF+ +P+L +P N +
Sbjct: 573 QDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQS 632
Query: 551 LPVCKA 556
C
Sbjct: 633 GSHCHG 638
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 232 bits (592), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 157/536 (29%), Positives = 245/536 (45%), Gaps = 27/536 (5%)
Query: 16 DEEFNRTILERGVDLKDLACLPISLGWYGEKEE-NRRLIKVQCYSM---KDTANFYMRPI 71
DE + + + R +D+ + P+S G + EE RR+++ + +D+A + P+
Sbjct: 115 DERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSA--WAHPV 172
Query: 72 EGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLIN-PISLEQPEGP 130
+GL +D+ +KEV + D G P+P Y+ L ++ PIS+ QPEGP
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGV-FPVPAEHGN---YTDPELTGPLRTTQKPISITQPEGP 228
Query: 131 SFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMD 190
SF + + ++W W + D R G ++ RD D +R ++ + +E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGD 286
Query: 191 PTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFE 250
P+ ++ Y D GEY G A L+ DC + Y+ V A G P N IC+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 251 SYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGL 310
G + +H++ GI R +V+ ++ N DY W DG I +
Sbjct: 347 EDWGILA-KHSD---LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 311 SGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKV 370
+G++ + IS A L H H + LDM IDG N +
Sbjct: 403 TGVVFTSAFPEGGSDNISQLAPGLGAPF---------HQHIFSARLDMAIDGFTNRVEEE 453
Query: 371 NIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGY 430
++ RQ PG R + R V E +A + + + NP K R+ PVGY
Sbjct: 454 DVVRQTMGPGNE-RGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGY 512
Query: 431 KVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDTLAVWSD 490
K+ L D +R AF +WVT Y + E++ G FV Q G L +
Sbjct: 513 KLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIA 572
Query: 491 RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPN 546
+DR I+ +DIV+W+T G H P ED+PIMP + F L+P FF+ +P+L +P N
Sbjct: 573 QDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPAN 628
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 157/546 (28%), Positives = 246/546 (45%), Gaps = 27/546 (4%)
Query: 16 DEEFNRTILERGVDLKDLACLPISLGWYGEKEE-NRRLIKVQCYSM---KDTANFYMRPI 71
DE + + + R +D+ + P+S G + EE RR+++ + +D+A + P+
Sbjct: 115 DERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSA--WAHPV 172
Query: 72 EGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLIN-PISLEQPEGP 130
+GL +D+ +KEV + D G P+P Y+ L ++ PIS+ QPEGP
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGV-FPVPAEHGN---YTDPELTGPLRTTQKPISITQPEGP 228
Query: 131 SFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMD 190
SF + + ++W W + D R G ++ RD D +R ++ + +E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGD 286
Query: 191 PTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFE 250
P+ ++ Y GEY G A L+ DC + Y+ V A G P N IC+ E
Sbjct: 287 PSPIRSWQNYFKTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 251 SYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGL 310
G + +H++ GI R +V+ ++ N DY W DG I +
Sbjct: 347 EDWGILA-KHSD---LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 311 SGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKV 370
+G++ + IS A L H H + LDM IDG N +
Sbjct: 403 TGVVFTSAFPEGGSDNISQLAPGLGAPF---------HQHIFSARLDMAIDGFTNRVEEE 453
Query: 371 NIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGY 430
++ RQ PG R + R V E +A + + + NP K R+ PVGY
Sbjct: 454 DVVRQTMGPGNE-RGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGY 512
Query: 431 KVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDTLAVWSD 490
K+ L D +R AF +WVT Y + E++ G FV Q G L +
Sbjct: 513 KLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIA 572
Query: 491 RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKD 550
+DR I+ +DIV+W+T G H P ED+PIMP + F L+P FF+ +P+L +P N +
Sbjct: 573 QDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQS 632
Query: 551 LPVCKA 556
C
Sbjct: 633 GSHCHG 638
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 157/546 (28%), Positives = 246/546 (45%), Gaps = 27/546 (4%)
Query: 16 DEEFNRTILERGVDLKDLACLPISLGWYGEKEE-NRRLIKVQCYSM---KDTANFYMRPI 71
DE + + + R +D+ + P+S G + EE RR+++ + +D+A + P+
Sbjct: 115 DERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSA--WAHPV 172
Query: 72 EGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLIN-PISLEQPEGP 130
+GL +D+ +KEV + D G P+P Y+ L ++ PIS+ QPEGP
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGV-FPVPAEHGN---YTDPELTGPLRTTQKPISITQPEGP 228
Query: 131 SFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMD 190
SF + + ++W W + D R G ++ RD D +R ++ + +E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGD 286
Query: 191 PTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFE 250
P+ ++ Y GEY G A L+ DC + Y+ V A G P N IC+ E
Sbjct: 287 PSPIRSWQNYFATGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 251 SYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGL 310
G + +H++ GI R +V+ ++ N DY W DG I +
Sbjct: 347 EDWGILA-KHSD---LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 311 SGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKV 370
+G++ + IS A L H H + LDM IDG N +
Sbjct: 403 TGVVFTSAFPEGGSDNISQLAPGLGAPF---------HQHIFSARLDMAIDGFTNRVEEE 453
Query: 371 NIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGY 430
++ RQ PG R + R V E +A + + + NP K R+ PVGY
Sbjct: 454 DVVRQTMGPGNE-RGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGY 512
Query: 431 KVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDTLAVWSD 490
K+ L D +R AF +WVT Y + E++ G FV Q G L +
Sbjct: 513 KLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIA 572
Query: 491 RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKD 550
+DR I+ +DIV+W+T G H P ED+PIMP + F L+P FF+ +P+L +P N +
Sbjct: 573 QDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQS 632
Query: 551 LPVCKA 556
C
Sbjct: 633 GSHCHG 638
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/546 (28%), Positives = 246/546 (45%), Gaps = 27/546 (4%)
Query: 16 DEEFNRTILERGVDLKDLACLPISLGWYGEKEE-NRRLIKVQCYSM---KDTANFYMRPI 71
DE + + + R +D+ + P+S G + EE RR+++ + +D+A + P+
Sbjct: 115 DERWLKALAARNLDVSKVRVAPLSAGVFEYAEERGRRILRGLAFVQDFPEDSA--WAHPV 172
Query: 72 EGLTILLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLIN-PISLEQPEGP 130
+GL +D+ +KEV + D G P+P Y+ L ++ PIS+ QPEGP
Sbjct: 173 DGLVAYVDVVSKEVTRVIDTGV-FPVPAEHGN---YTDPELTGPLRTTQKPISITQPEGP 228
Query: 131 SFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMD 190
SF + + ++W W + D R G ++ RD D +R ++ + +E+ VPY D
Sbjct: 229 SFTVTGGNHIEWEKWSLDVGFDVREGVVLHNIAFRDGD--RLRPIINRASIAEMVVPYGD 286
Query: 191 PTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFE 250
P+ ++ Y D GEY G A L+ DC + Y+ V A G P N IC+ E
Sbjct: 287 PSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAFGNPREIRNGICMHE 346
Query: 251 SYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGL 310
G + +H++ GI R +V+ ++ N DY W DG I +
Sbjct: 347 EDWGILA-KHSD---LWSGINYTRRNRRMVISFFTTIGNXDYGFYWYLYLDGTIEFEAKA 402
Query: 311 SGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKV 370
+G++ + IS A L H H + LDM IDG N +
Sbjct: 403 TGVVFTSAFPEGGSDNISQLAPGLGAPF---------HQHIFSARLDMAIDGFTNRVEEE 453
Query: 371 NIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGY 430
++ RQ PG R + R V E +A + + + NP K R+ PVGY
Sbjct: 454 DVVRQTMGPGNE-RGNAFSRKRTVLTRESEAVREADARTGRTWIISNPESKNRLNEPVGY 512
Query: 431 KVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDTLAVWSD 490
K+ L D +R AF +WVT Y + E++ G FV Q G L +
Sbjct: 513 KLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIA 572
Query: 491 RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKD 550
+DR I+ +DIV+W+T G P ED+PIMP + F L+P FF+ +P+L +P N +
Sbjct: 573 QDRDIDGQDIVVWHTFGLTAFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQS 632
Query: 551 LPVCKA 556
C
Sbjct: 633 GSHCHG 638
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 203/427 (47%), Gaps = 22/427 (5%)
Query: 119 INPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYK 178
+ P+ ++QPEGPSF + D H + W WEF + P R G + + R+V+Y+
Sbjct: 225 LKPLIVQQPEGPSFNV-DGHKISWQGWEFFVIPTVREGFAIYDIHFKG------RSVVYR 277
Query: 179 GFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGT 238
SE+ VPY DP ++ K D G+ GFG L DC YMD +G
Sbjct: 278 LSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYMDCRRVNTNGD 337
Query: 239 PYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEF 298
+ N +C+ E G + ++H I R VV+ A+VAN +Y+++ F
Sbjct: 338 SVLIPNTVCLHEQ-DGGLLYKHTNYRTNVPVIARRR---EFVVQTIATVANXEYMLNIIF 393
Query: 299 QTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDM 358
G IRI V +GIL + + +GT + V+ H H ++F +D
Sbjct: 394 DQAGEIRIHVRATGIL--------STMPLDKDVTVPWGTNVGPRVMAAYHQHMLSFRIDP 445
Query: 359 DIDGSDNSFVKVNIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINP 418
+DG +N+ V ++ R E + +P +R V EK ++ + + +IN
Sbjct: 446 AVDGYENTVVFDDVIRMEKNTKLNPYNVGFVTERTVV--EKPGYVEQSPFTNRSYKIINE 503
Query: 419 TKKTRVGN-PVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVY 477
K + PV YK++ L D + KR F Q+WVT Y ++E +A G F
Sbjct: 504 NKINPISKKPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDNELYAAGEFTN 563
Query: 478 QSKGEDTLAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFES 537
QS+ + L VW+ RD ++ N + V+W TLGF HIP EDFP+MP + L P FF+
Sbjct: 564 QSQTDTGLGVWARRDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDK 623
Query: 538 NPILRIP 544
NP L +P
Sbjct: 624 NPALSVP 630
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 153/560 (27%), Positives = 250/560 (44%), Gaps = 29/560 (5%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGV---DLKDLACLPISLGWYGEKEENRRLIKVQC 57
+T+ED+ S+ D + G+ ++ + C P ++G+ +RL +
Sbjct: 100 LTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALV 159
Query: 58 YSMKDTANF-YMRPIEGLTILLDMDTKEVL--EITDKGKNIPIPKAVNTDYRYSAQGLHQ 114
Y D + Y P++ ++D + K+V+ +I ++ + + K N ++ + +
Sbjct: 160 YYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGA 218
Query: 115 RMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRN 174
PI++ QPEG SF + ++++W+N++FH+ + R G ++S D G +R
Sbjct: 219 MRPEAPPINVTQPEGVSFKMTG-NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRP 275
Query: 175 VMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPA 234
+ ++ SE+ VPY P K +D GEYG G PL DC HY+D F
Sbjct: 276 IFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSD 335
Query: 235 ADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIV 294
G P N +CI E G + ++H++ V LVV + ANY+Y +
Sbjct: 336 RAGDPITVKNAVCIHEEDDG-LLFKHSDF-RDNFATSLVTRATKLVVSQIFTAANYEYCL 393
Query: 295 DWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAE-NLFGTLLSENVIGVIHDHFIT 353
W F DG IR+ + L+GIL N + + E +GT + NV H H +
Sbjct: 394 YWVFMQDGAIRLDIRLTGIL--------NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFS 445
Query: 354 FYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKA---DRNVAKTEKDAQIKLKLYDP 410
+D IDG NS + K P SP Y A ++ KT KD+ +
Sbjct: 446 LRIDPRIDGDGNSAAACDAK-SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATG 504
Query: 411 AEFHVINPTK-KTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQ 469
+ + NP K G P YK+V L KR + ++ + V PY ++
Sbjct: 505 RSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRL 564
Query: 470 WAGGLFVYQSKGEDTLAV--W-SDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSS 526
+ G V Q G+ + W D +I+N DI+ ++T G H P EDFP+MP +
Sbjct: 565 YPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPIT 624
Query: 527 FDLKPVNFFESNPILRIPPN 546
L+P +FF NP L I P+
Sbjct: 625 LMLRPRHFFTENPGLDIQPS 644
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 153/560 (27%), Positives = 250/560 (44%), Gaps = 29/560 (5%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGV---DLKDLACLPISLGWYGEKEENRRLIKVQC 57
+T+ED+ S+ D + G+ ++ + C P ++G+ +RL +
Sbjct: 116 LTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALV 175
Query: 58 YSMKDTANF-YMRPIEGLTILLDMDTKEVL--EITDKGKNIPIPKAVNTDYRYSAQGLHQ 114
Y D + Y P++ ++D + K+V+ +I ++ + + K N ++ + +
Sbjct: 176 YYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGA 234
Query: 115 RMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRN 174
PI++ QPEG SF + ++++W+N++FH+ + R G ++S D G +R
Sbjct: 235 MRPEAPPINVTQPEGVSFKMTG-NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRP 291
Query: 175 VMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPA 234
+ ++ SE+ VPY P K +D GEYG G PL DC HY+D F
Sbjct: 292 IFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSD 351
Query: 235 ADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIV 294
G P N +CI E G + ++H++ V LVV + ANY+Y +
Sbjct: 352 RAGDPITVKNAVCIHEEDDG-LLFKHSDF-RDNFATSLVTRATKLVVSQIFTAANYEYCL 409
Query: 295 DWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAE-NLFGTLLSENVIGVIHDHFIT 353
W F DG IR+ + L+GIL N + + E +GT + NV H H +
Sbjct: 410 YWVFMQDGAIRLDIRLTGIL--------NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFS 461
Query: 354 FYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKA---DRNVAKTEKDAQIKLKLYDP 410
+D IDG NS + K P SP Y A ++ KT KD+ +
Sbjct: 462 LRIDPRIDGDGNSAAACDAK-SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATG 520
Query: 411 AEFHVINPTK-KTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQ 469
+ + NP K G P YK+V L KR + ++ + V PY ++
Sbjct: 521 RSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRL 580
Query: 470 WAGGLFVYQSKGEDTLAV--W-SDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSS 526
+ G V Q G+ + W D +I+N DI+ ++T G H P EDFP+MP +
Sbjct: 581 YPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPIT 640
Query: 527 FDLKPVNFFESNPILRIPPN 546
L+P +FF NP L I P+
Sbjct: 641 LMLRPRHFFTENPGLDIQPS 660
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 152/560 (27%), Positives = 249/560 (44%), Gaps = 29/560 (5%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGV---DLKDLACLPISLGWYGEKEENRRLIKVQC 57
+T+ED+ S+ D + G+ ++ + C P ++G+ +RL +
Sbjct: 104 LTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALV 163
Query: 58 YSMKDTANF-YMRPIEGLTILLDMDTKEVL--EITDKGKNIPIPKAVNTDYRYSAQGLHQ 114
Y D + Y P++ ++D + K+V+ +I ++ + + K N ++ + +
Sbjct: 164 YYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGA 222
Query: 115 RMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRN 174
PI++ QPEG SF + ++++W+N++FH+ + R G ++S D G +R
Sbjct: 223 MRPEAPPINVTQPEGVSFKMTG-NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRP 279
Query: 175 VMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPA 234
+ ++ SE+ VPY P K +D GEYG G PL DC HY+D F
Sbjct: 280 IFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSD 339
Query: 235 ADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIV 294
G P N +CI E G + ++H++ V LVV + AN +Y +
Sbjct: 340 RAGDPITVKNAVCIHEEDDG-LLFKHSDF-RDNFATSLVTRATKLVVSQIFTAANXEYCL 397
Query: 295 DWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAE-NLFGTLLSENVIGVIHDHFIT 353
W F DG IR+ + L+GIL N + + E +GT + NV H H +
Sbjct: 398 YWVFMQDGAIRLDIRLTGIL--------NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFS 449
Query: 354 FYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKA---DRNVAKTEKDAQIKLKLYDP 410
+D IDG NS + K P SP Y A ++ KT KD+ +
Sbjct: 450 LRIDPRIDGDGNSAAACDAK-SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATG 508
Query: 411 AEFHVINPTK-KTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQ 469
+ + NP K G P YK+V L KR + ++ + V PY ++
Sbjct: 509 RSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRL 568
Query: 470 WAGGLFVYQSKGEDTLAV--W-SDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSS 526
+ G V Q G+ + W D +I+N DI+ ++T G H P EDFP+MP +
Sbjct: 569 YPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPIT 628
Query: 527 FDLKPVNFFESNPILRIPPN 546
L+P +FF NP L I P+
Sbjct: 629 LMLRPRHFFTENPGLDIQPS 648
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 152/560 (27%), Positives = 249/560 (44%), Gaps = 29/560 (5%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGV---DLKDLACLPISLGWYGEKEENRRLIKVQC 57
+T+ED+ S+ D + G+ ++ + C P ++G+ +RL +
Sbjct: 99 LTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALV 158
Query: 58 YSMKDTANF-YMRPIEGLTILLDMDTKEVL--EITDKGKNIPIPKAVNTDYRYSAQGLHQ 114
Y D + Y P++ ++D + K+V+ +I ++ + + K N ++ + +
Sbjct: 159 YYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGA 217
Query: 115 RMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRN 174
PI++ QPEG SF + ++++W+N++FH+ + R G ++S D G +R
Sbjct: 218 MRPEAPPINVTQPEGVSFKMTG-NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRP 274
Query: 175 VMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPA 234
+ ++ SE+ VPY P K +D GEYG G PL DC HY+D F
Sbjct: 275 IFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSD 334
Query: 235 ADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIV 294
G P N +CI E G + ++H++ V LVV + AN +Y +
Sbjct: 335 RAGDPITVKNAVCIHEEDDG-LLFKHSDF-RDNFATSLVTRATKLVVSQIFTAANXEYCL 392
Query: 295 DWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAE-NLFGTLLSENVIGVIHDHFIT 353
W F DG IR+ + L+GIL N + + E +GT + NV H H +
Sbjct: 393 YWVFMQDGAIRLDIRLTGIL--------NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFS 444
Query: 354 FYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKA---DRNVAKTEKDAQIKLKLYDP 410
+D IDG NS + K P SP Y A ++ KT KD+ +
Sbjct: 445 LRIDPRIDGDGNSAAACDAK-SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATG 503
Query: 411 AEFHVINPTK-KTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQ 469
+ + NP K G P YK+V L KR + ++ + V PY ++
Sbjct: 504 RSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRL 563
Query: 470 WAGGLFVYQSKGEDTLAV--W-SDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSS 526
+ G V Q G+ + W D +I+N DI+ ++T G H P EDFP+MP +
Sbjct: 564 YPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPIT 623
Query: 527 FDLKPVNFFESNPILRIPPN 546
L+P +FF NP L I P+
Sbjct: 624 LMLRPRHFFTENPGLDIQPS 643
>pdb|2OOV|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|A Chain A, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|B Chain B, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 151/560 (26%), Positives = 248/560 (44%), Gaps = 29/560 (5%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGV---DLKDLACLPISLGWYGEKEENRRLIKVQC 57
+T+ED+ S+ D + G+ ++ + C P ++G+ +RL +
Sbjct: 104 LTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALV 163
Query: 58 YSMKDTANF-YMRPIEGLTILLDMDTKEVL--EITDKGKNIPIPKAVNTDYRYSAQGLHQ 114
Y D + Y P++ ++D + K+V+ +I ++ + + K N ++ + +
Sbjct: 164 YYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGA 222
Query: 115 RMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRN 174
PI++ QPEG SF + ++++W+N++FH+ + R G ++S D G +R
Sbjct: 223 MRPEAPPINVTQPEGVSFKMTG-NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRP 279
Query: 175 VMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPA 234
+ ++ SE+ VPY P K +D GEYG G PL DC HY+D F
Sbjct: 280 IFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSD 339
Query: 235 ADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIV 294
G P N +CI E G + ++H++ V LVV + AN +Y +
Sbjct: 340 RAGDPITVKNAVCIHEEDDG-LLFKHSDF-RDNFATSLVTRATKLVVSQIFTAANXEYCL 397
Query: 295 DWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAE-NLFGTLLSENVIGVIHDHFIT 353
W F DG IR+ + L+GIL N + + E +GT + NV H H +
Sbjct: 398 YWVFMQDGAIRLDIRLTGIL--------NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFS 449
Query: 354 FYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKA---DRNVAKTEKDAQIKLKLYDP 410
+D IDG NS + K P SP Y A ++ KT KD+ +
Sbjct: 450 LRIDPRIDGDGNSAAACDAK-SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATG 508
Query: 411 AEFHVINPTK-KTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQ 469
+ + NP K G P YK+V L KR + ++ + V PY ++
Sbjct: 509 RSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRL 568
Query: 470 WAGGLFVYQSKGEDTLAV--W-SDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSS 526
+ G V Q G+ + W D +I+N DI+ ++T G H P EDFP+ P +
Sbjct: 569 YPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXPAEPIT 628
Query: 527 FDLKPVNFFESNPILRIPPN 546
L+P +FF NP L I P+
Sbjct: 629 LMLRPRHFFTENPGLDIQPS 648
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 151/560 (26%), Positives = 248/560 (44%), Gaps = 29/560 (5%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGV---DLKDLACLPISLGWYGEKEENRRLIKVQC 57
+T+ED+ S+ D + G+ ++ + C P ++G+ +RL +
Sbjct: 116 LTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALV 175
Query: 58 YSMKDTANF-YMRPIEGLTILLDMDTKEVL--EITDKGKNIPIPKAVNTDYRYSAQGLHQ 114
Y D + Y P++ ++D + K+V+ +I ++ + + K N ++ + +
Sbjct: 176 YYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGA 234
Query: 115 RMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRN 174
PI++ QPEG SF + ++++W+N++FH+ + R G ++S D G +R
Sbjct: 235 MRPEAPPINVTQPEGVSFKMTG-NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRP 291
Query: 175 VMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPA 234
+ ++ SE+ VP P K +D GEYG G PL DC HY+D F
Sbjct: 292 IFHRISLSEMIVPAGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSD 351
Query: 235 ADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIV 294
G P N +CI E G + ++H++ V LVV + AN +Y +
Sbjct: 352 RAGDPITVKNAVCIHEEDDG-LLFKHSDF-RDNFATSLVTRATKLVVSQIFTAANXEYCL 409
Query: 295 DWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAE-NLFGTLLSENVIGVIHDHFIT 353
W F DG IR+ + L+GIL N + + E +GT + NV H H +
Sbjct: 410 YWVFMQDGAIRLDIRLTGIL--------NTYILGDDEEAGPWGTRVYPNVNAHNHQHLFS 461
Query: 354 FYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKA---DRNVAKTEKDAQIKLKLYDP 410
+D IDG NS + K P SP Y A ++ KT KD+ +
Sbjct: 462 LRIDPRIDGDGNSAAACDAK-SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATG 520
Query: 411 AEFHVINPTK-KTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQ 469
+ + NP K G P YK+V L KR + ++ + V PY ++
Sbjct: 521 RSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRL 580
Query: 470 WAGGLFVYQSKGEDTLAV--W-SDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSS 526
+ G V Q G+ + W D +I+N DI+ ++T G H P EDFP+MP +
Sbjct: 581 YPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPIT 640
Query: 527 FDLKPVNFFESNPILRIPPN 546
L+P +FF NP L I P+
Sbjct: 641 LMLRPRHFFTENPGLDIQPS 660
>pdb|3NBJ|A Chain A, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|B Chain B, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|C Chain C, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|D Chain D, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|E Chain E, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
pdb|3NBJ|F Chain F, Crystal Structure Of Y305f Mutant Of The Copper Amine
Oxidase From Hansenula Polymorpha Expressed In Yeast
Length = 657
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 151/562 (26%), Positives = 249/562 (44%), Gaps = 31/562 (5%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGV---DLKDLACLPISLGWYGEKEENRRLIKVQC 57
+T+ED+ S+ D + G+ ++ + C P ++G+ +RL +
Sbjct: 99 LTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALV 158
Query: 58 YSMKDTANF-YMRPIEGLTILLDMDTKEVL--EITDKGKNIPIPKAVNTDYRYSAQGLHQ 114
Y D + Y P++ ++D + K+V+ +I ++ + + K N ++ + +
Sbjct: 159 YYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGA 217
Query: 115 RMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRN 174
PI++ QPEG SF + ++++W+N++FH+ + R G ++S D G +R
Sbjct: 218 MRPEAPPINVTQPEGVSFKMTG-NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRP 274
Query: 175 VMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPA 234
+ ++ SE+ VP+ P K +D GEYG G PL DC HY+D F
Sbjct: 275 IFHRISLSEMIVPFGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSD 334
Query: 235 ADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVAN-YDYI 293
G P N +CI E G + ++H++ V LVV + AN +Y
Sbjct: 335 RAGDPITVKNAVCIHEEDDG-LLFKHSDF-RDNFATSLVTRATKLVVSQIFTAANXXEYC 392
Query: 294 VDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAE-NLFGTLLSENVIGVIHDHFI 352
+ W F DG IR+ + L+GIL N + + E +GT + NV H H
Sbjct: 393 LYWVFMQDGAIRLDIRLTGIL--------NTYILGDDEEAGPWGTRVYPNVNAHNHQHLF 444
Query: 353 TFYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKA---DRNVAKTEKDAQIKLKLYD 409
+ +D IDG NS + K P SP Y A ++ KT KD+ +
Sbjct: 445 SLRIDPRIDGDGNSAAACDAK-SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESAT 503
Query: 410 PAEFHVINPTK-KTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESE 468
+ + NP K G P YK+V L KR + ++ + V PY ++
Sbjct: 504 GRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNR 563
Query: 469 QWAGGLFVYQSKGEDTLAV--W-SDRDRSIENKDIVLWYTLGFHHIPCQEDFPI-MPTVS 524
+ G V Q G+ + W D +I+N DI+ ++T G H P EDFP+ MP
Sbjct: 564 LYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEP 623
Query: 525 SSFDLKPVNFFESNPILRIPPN 546
+ L+P +FF NP L I P+
Sbjct: 624 ITLMLRPRHFFTENPGLDIQPS 645
>pdb|3NBB|A Chain A, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|B Chain B, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|C Chain C, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|D Chain D, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|E Chain E, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
pdb|3NBB|F Chain F, Crystal Structure Of Mutant Y305f Expressed In E. Coli In
The Copper Amine Oxidase From Hansenula Polymorpha
Length = 663
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 151/562 (26%), Positives = 249/562 (44%), Gaps = 31/562 (5%)
Query: 1 MTIEDMTSSTWAPLADEEFNRTILERGV---DLKDLACLPISLGWYGEKEENRRLIKVQC 57
+T+ED+ S+ D + G+ ++ + C P ++G+ +RL +
Sbjct: 102 LTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALV 161
Query: 58 YSMKDTANF-YMRPIEGLTILLDMDTKEVL--EITDKGKNIPIPKAVNTDYRYSAQGLHQ 114
Y D + Y P++ ++D + K+V+ +I ++ + + K N ++ + +
Sbjct: 162 YYRSDEDDSQYSHPLD-FCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGA 220
Query: 115 RMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRN 174
PI++ QPEG SF + ++++W+N++FH+ + R G ++S D G +R
Sbjct: 221 MRPEAPPINVTQPEGVSFKMTG-NVMEWSNFKFHIGFNYREGIVLSDVSYND--HGNVRP 277
Query: 175 VMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPA 234
+ ++ SE+ VP+ P K +D GEYG G PL DC HY+D F
Sbjct: 278 IFHRISLSEMIVPFGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSD 337
Query: 235 ADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVAN-YDYI 293
G P N +CI E G + ++H++ V LVV + AN +Y
Sbjct: 338 RAGDPITVKNAVCIHEEDDG-LLFKHSDF-RDNFATSLVTRATKLVVSQIFTAANXXEYC 395
Query: 294 VDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAE-NLFGTLLSENVIGVIHDHFI 352
+ W F DG IR+ + L+GIL N + + E +GT + NV H H
Sbjct: 396 LYWVFMQDGAIRLDIRLTGIL--------NTYILGDDEEAGPWGTRVYPNVNAHNHQHLF 447
Query: 353 TFYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKA---DRNVAKTEKDAQIKLKLYD 409
+ +D IDG NS + K P SP Y A ++ KT KD+ +
Sbjct: 448 SLRIDPRIDGDGNSAAACDAK-SSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESAT 506
Query: 410 PAEFHVINPTK-KTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESE 468
+ + NP K G P YK+V L KR + ++ + V PY ++
Sbjct: 507 GRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNR 566
Query: 469 QWAGGLFVYQSKGEDTLAV--W-SDRDRSIENKDIVLWYTLGFHHIPCQEDFPI-MPTVS 524
+ G V Q G+ + W D +I+N DI+ ++T G H P EDFP+ MP
Sbjct: 567 LYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLXMPAEP 626
Query: 525 SSFDLKPVNFFESNPILRIPPN 546
+ L+P +FF NP L I P+
Sbjct: 627 ITLMLRPRHFFTENPGLDIQPS 648
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 127/436 (29%), Positives = 191/436 (43%), Gaps = 47/436 (10%)
Query: 124 LEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSE 183
L QP GP F +E V + W F + +G V GE + Y+ E
Sbjct: 282 LVQPHGPRFRLEGN-AVLYGGWSFAFRLRSSSGLQVLNVHF----GGE--RIAYEVSVQE 334
Query: 184 LFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGV--FPAADGTPYV 241
Y T A Y+D G +G G L P DCP A ++D + A D Y
Sbjct: 335 AVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYP 393
Query: 242 RSNMICIFESYAGDIGWRHAESPITG-----MGIKEVRPKVTLVVRMAASVANYDYIVDW 296
R+ +C+FE G RH S G G+K LV+R ++V N DYI D+
Sbjct: 394 RA--LCLFEMPTGVPLRRHFNSNFKGGFNFYAGLK----GQVLVLRTTSTVYNXDYIWDF 447
Query: 297 EFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYL 356
F +G++ K+ +G + E + GT L ++IG IH H + + +
Sbjct: 448 IFYPNGVMEAKMHATGYVHATFYTPEGLRH---------GTRLHTHLIGNIHTHLVHYRV 498
Query: 357 DMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKA--DRNVAKTEKDAQIKLKLYDPAEFH 414
D+D+ G+ NSF + +K + + SPR ++ ++ E+ A + K P
Sbjct: 499 DLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLL 558
Query: 415 VINPTKKTRVGNPVGYKVVPGGTAASLLDREDPP--QKRGAFT--NNQIWVTPYNESEQW 470
+P + NP G+K S+ D+ PP Q+ A T + VT Y ESE
Sbjct: 559 FTSPQE-----NPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELC 613
Query: 471 AGGLFVYQSKGEDTLAVWSD---RDRSIENKDIVLWYTLGFHHIPCQEDFP--IMPTVSS 525
+ ++ +Q+ D V+ + +IEN+D+V W T+GF HIP ED P P S
Sbjct: 614 SSSIY-HQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSV 672
Query: 526 SFDLKPVNFFESNPIL 541
F L+P NFF +P L
Sbjct: 673 GFLLRPFNFFPEDPSL 688
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/424 (26%), Positives = 182/424 (42%), Gaps = 31/424 (7%)
Query: 126 QPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELF 185
P+GP F ++ + + W F +G V R + GE + Y+ E
Sbjct: 300 HPQGPRFSVQGNRVAS-SLWTFSFGLGAFSGPRVFDVRFQ----GE--RLAYEISLQEAG 352
Query: 186 VPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNM 245
Y T A YMD+G +G G A PL DCP A YMD F TP +
Sbjct: 353 AVYGGNTPAAMLTRYMDSG-FGMGYFATPLIRGVDCPYLATYMDWHFVVESQTPKTLHDA 411
Query: 246 ICIFESYAGDIGWRHAESPITGM--GIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGL 303
C+FE G RH ++ G+ + LV R +++ N DY+ D F +G
Sbjct: 412 FCVFEQNKGLPLRRHHSDFLSHYFGGVAQT----VLVFRSVSTMLNXDYVWDMVFYPNGA 467
Query: 304 IRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGS 363
I +K+ +G + + A +G + E+ +G +H H + +D+D+ G
Sbjct: 468 IEVKLHATGYIS---------SAFLFGAARRYGNQVGEHTLGPVHTHSAHYKVDLDVGGL 518
Query: 364 DNSFVKVNIKRQETSPGESPRRSY--LKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKK 421
+N ++ T+ SP L+ R +TE+ A L P ++ + +
Sbjct: 519 ENWVWAEDMAFVPTAIPWSPEHQIQRLQVTRKQLETEEQAAFPLGGASPRYLYLAS-KQS 577
Query: 422 TRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKG 481
+ G+P GY++ A + + P ++ ++ Q+ +T E+E + +F
Sbjct: 578 NKWGHPRGYRIQTVSFAGGPMPQNSPMERAFSWGRYQLAITQRKETEPSSSSVFNQNDPW 637
Query: 482 EDTLAVWSD--RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVNFFES 537
T+ +SD + +I KD+V W T GF HIP ED P TV + F L+P NFF+
Sbjct: 638 TPTVD-FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQ 696
Query: 538 NPIL 541
P +
Sbjct: 697 EPSM 700
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 184/429 (42%), Gaps = 36/429 (8%)
Query: 121 PISLEQPEGPSFVIEDEH-LVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKG 179
P + P+G + ++ E V W ++ F++ + G + + + + V+Y+
Sbjct: 327 PPVMIAPDGARYSVDAERKYVTWMDFSFYIAFNRDTGLSLFDIKYKG------QRVLYEL 380
Query: 180 FTSELFVPYM--DPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADG 237
E Y DP + Y+D+ YGFG A L DCP A Y++ F D
Sbjct: 381 GLQEALAHYAANDPVQS--SVAYLDS-YYGFGPYAFELLKGYDCPSYASYLNTSF-YKDE 436
Query: 238 TPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWE 297
+ + +C+FE A RH+ S V V +R +++ N DY+ +
Sbjct: 437 ETHTHVDSLCLFEFDADYPMARHSTSEFVS-----VTKNVYFTLRSVSTIGNXDYMFSYN 491
Query: 298 FQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLD 357
F DG I ++V SG + +AY NQ FG + +++ G +HDH + F D
Sbjct: 492 FHMDGTIGVEVRASGYIQ---SAYYANNQD-------FGYQIHDSLSGSMHDHVLNFKAD 541
Query: 358 MDIDGSDNSFVKVNI---KRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFH 414
DI G +N+ V++ +Q + G R + ++ R+ +E +A++ + H
Sbjct: 542 FDILGPNNTIELVSVVPVTKQFSWSGNKTRNT-MQLGRSFIHSEDEARLNWGFNGQTQLH 600
Query: 415 VINPTKKTRVGNPVGYKVVP-GGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGG 473
V+N K + G P GY+++P GTA + + + VT ++ E +
Sbjct: 601 VVNQDKPNKFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHDFEPTSAH 660
Query: 474 LFVYQSKGEDTLAVWSDRD-RSIENKDIVLWYTLGFHHIPCQEDFP--IMPTVSSSFDLK 530
+ Q + + + S+ D+V+W LG HH+P D P + T S
Sbjct: 661 PYNSQDIHNPPVDFSTFFNGESLNQTDLVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFT 720
Query: 531 PVNFFESNP 539
P+N+ +P
Sbjct: 721 PLNYLPGDP 729
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 177/426 (41%), Gaps = 41/426 (9%)
Query: 127 PEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFV 186
P+GP F ++ + + W F +G + R + GE ++Y+ E
Sbjct: 318 PQGPRFSVQGSRVAS-SLWTFSFGLGAFSGPRIFDVRFQ----GE--RLVYEISLQEALA 370
Query: 187 PYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMI 246
Y + A Y+D G +G G PL DCP A Y+D F P +
Sbjct: 371 IYGGNSPAAMTTRYVDGG-FGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAF 429
Query: 247 CIFESYAGDIGWRHAESPITGM--GIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLI 304
C+FE G RH + G+ E LVVR +++ N DY+ D F G I
Sbjct: 430 CVFEQNQGLPLRRHHSDLYSHYFGGLAET----VLVVRSMSTLLNXDYVWDTVFHPSGAI 485
Query: 305 RIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSD 364
I+ +G + + A +G +SE+ +G +H H F +D+D+ G +
Sbjct: 486 EIRFYATGYIS---------SAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLE 536
Query: 365 N-------SFVKVNIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVIN 417
N FV + + SP +R L+ R + + E+ A + P ++ +
Sbjct: 537 NWVWAEDMVFVPMAVP---WSPEHQLQR--LQVTRKLLEMEEQAAFLVGSATPRYLYLAS 591
Query: 418 PTKKTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVY 477
+ G+P GY++ A L + + ++ Q+ VT E E + +F
Sbjct: 592 -NHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQ 650
Query: 478 QSKGEDTLAVWSD--RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVN 533
T+ +SD + +I KD+V W T GF HIP ED P TV + F L+P N
Sbjct: 651 NDPWAPTVD-FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYN 709
Query: 534 FFESNP 539
FF+ +P
Sbjct: 710 FFDEDP 715
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 177/426 (41%), Gaps = 41/426 (9%)
Query: 127 PEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFV 186
P+GP F ++ + + W F +G + R + GE ++Y+ E
Sbjct: 303 PQGPRFSVQGSRVAS-SLWTFSFGLGAFSGPRIFDVRFQ----GE--RLVYEISLQEALA 355
Query: 187 PYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMI 246
Y + A Y+D G +G G PL DCP A Y+D F P +
Sbjct: 356 IYGGNSPAAMTTRYVDGG-FGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAF 414
Query: 247 CIFESYAGDIGWRHAESPITGM--GIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLI 304
C+FE G RH + G+ E LVVR +++ N DY+ D F G I
Sbjct: 415 CVFEQNQGLPLRRHHSDLYSHYFGGLAET----VLVVRSMSTLLNXDYVWDTVFHPSGAI 470
Query: 305 RIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSD 364
I+ +G + + A +G +SE+ +G +H H F +D+D+ G +
Sbjct: 471 EIRFYATGYIS---------SAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLE 521
Query: 365 N-------SFVKVNIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVIN 417
N FV + + SP +R L+ R + + E+ A + P ++ +
Sbjct: 522 NWVWAEDMVFVPMAVP---WSPEHQLQR--LQVTRKLLEMEEQAAFLVGSATPRYLYLAS 576
Query: 418 PTKKTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVY 477
+ G+P GY++ A L + + ++ Q+ VT E E + +F
Sbjct: 577 -NHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQ 635
Query: 478 QSKGEDTLAVWSD--RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVN 533
T+ +SD + +I KD+V W T GF HIP ED P TV + F L+P N
Sbjct: 636 NDPWAPTVD-FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYN 694
Query: 534 FFESNP 539
FF+ +P
Sbjct: 695 FFDEDP 700
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 177/426 (41%), Gaps = 41/426 (9%)
Query: 127 PEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFV 186
P+GP F ++ + + W F +G + R + GE ++Y+ E
Sbjct: 290 PQGPRFSVQGSRVAS-SLWTFSFGLGAFSGPRIFDVRFQ----GE--RLVYEISLQEALA 342
Query: 187 PYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMI 246
Y + A Y+D G +G G PL DCP A Y+D F P +
Sbjct: 343 IYGGNSPAAMTTRYVDGG-FGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAF 401
Query: 247 CIFESYAGDIGWRHAESPITGM--GIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLI 304
C+FE G RH + G+ E LVVR +++ N DY+ D F G I
Sbjct: 402 CVFEQNQGLPLRRHHSDLYSHYFGGLAET----VLVVRSMSTLLNXDYVWDTVFHPSGAI 457
Query: 305 RIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSD 364
I+ +G + + A +G +SE+ +G +H H F +D+D+ G +
Sbjct: 458 EIRFYATGYIS---------SAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLE 508
Query: 365 N-------SFVKVNIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVIN 417
N FV + + SP +R L+ R + + E+ A + P ++ +
Sbjct: 509 NWVWAEDMVFVPMAVP---WSPEHQLQR--LQVTRKLLEMEEQAAFLVGSATPRYLYLAS 563
Query: 418 PTKKTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVY 477
+ G+P GY++ A L + + ++ Q+ VT E E + +F
Sbjct: 564 -NHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQ 622
Query: 478 QSKGEDTLAVWSD--RDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSS--SFDLKPVN 533
T+ +SD + +I KD+V W T GF HIP ED P TV + F L+P N
Sbjct: 623 NDPWAPTVD-FSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYN 681
Query: 534 FFESNP 539
FF+ +P
Sbjct: 682 FFDEDP 687
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 175/441 (39%), Gaps = 69/441 (15%)
Query: 124 LEQPEGPSFVIE-DEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTS 182
L +PEG + + DE W +W F+ G + GE ++Y+
Sbjct: 285 LVEPEGRRWAYDGDEEYFSWMDWGFYTSWSRDTGISFYDITFK----GE--RIVYELSLQ 338
Query: 183 ELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVR 242
EL Y D + T+ YG G L P DCP A Y D Y R
Sbjct: 339 ELIAEY-GSDDPFNQHTFYSDISYGVG-NRFSLVPGYDCPSTAGYFTTDTFEYDEF-YNR 395
Query: 243 SNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDG 302
+ C+FE+ RH TG + TL VR +++ N DY ++F DG
Sbjct: 396 TLSYCVFENQEDYSLLRH-----TGASYSAITQNPTLNVRFISTIGNXDYNFLYKFFLDG 450
Query: 303 LIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDG 362
+ + V +G + Y N + +G + + + G HDH + + +D+D+ G
Sbjct: 451 TLEVSVRAAGYIQA---GYWNP-----ETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGG 502
Query: 363 SDNSFVKVNIKRQETSPGESPRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVIN----- 417
+ N + +K + +P Y QI ++++ +F+ IN
Sbjct: 503 TKNRASQYVMKDVDVEYPWAPGTVY-----------NTKQIAREVFENEDFNGINWPENG 551
Query: 418 --------PTKKTRVGNPVGYKVVPGGTAASLL---DREDPPQKRGAFTNNQIWVTPYNE 466
+ GNP Y ++PGG + R P + A +N +++T + +
Sbjct: 552 QGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSN--LFLTKHKD 609
Query: 467 SEQWAGGLFVYQSKGEDTLAVWSD--------RDRSIENKDIVLWYTLGFHHIPCQEDFP 518
+E + S +T A++ D S++ +DIV W LG HH+P D P
Sbjct: 610 TE-------LRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLP 662
Query: 519 --IMPTVSSSFDLKPVNFFES 537
I T +SF L P N+F+S
Sbjct: 663 NTIFSTAHASFMLTPFNYFDS 683
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 106/430 (24%), Positives = 171/430 (39%), Gaps = 47/430 (10%)
Query: 124 LEQPEGPSFVIE-DEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTS 182
L +PEG + + +E W +W F+ G + GE ++Y+
Sbjct: 325 LVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITFK----GE--RIVYELSLQ 378
Query: 183 ELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVR 242
EL Y D + T+ YG G L P DCP A Y D Y R
Sbjct: 379 ELIAEY-GSDDPFNQHTFYSDISYGVG-NRFSLVPGYDCPATAGYFTTDTFEYDEF-YNR 435
Query: 243 SNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDG 302
+ C+FE+ RH TG + TL VR +++ N DY ++F DG
Sbjct: 436 TLSYCVFENQEDYSLLRH-----TGASYSAITQNPTLNVRFISTIGNXDYNFLYKFFLDG 490
Query: 303 LIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDG 362
+ + V +G + Y N + +G + + + G HDH + + +D+D+ G
Sbjct: 491 TLEVSVRAAGYIQA---GYWNP-----ETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGG 542
Query: 363 SDNSFVKVNIKRQETSPGESPRRSY--LKADRNVAKTEKDAQIKLKLYDPAEFHVINPTK 420
+ N K +K + +P Y + R V + E I + + +
Sbjct: 543 TKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEE 602
Query: 421 KTRVGNPVGYKVVPGGTAASLL---DREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVY 477
GNP Y ++PGG + R P + A +N +++T + + E +
Sbjct: 603 TNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSN--LFLTKHKDEE-------LR 653
Query: 478 QSKGEDTLAVWSD--------RDRSIENKDIVLWYTLGFHHIPCQEDFP--IMPTVSSSF 527
S +T A++ D S++ +DIV W LG HH+P D P I T +SF
Sbjct: 654 SSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASF 713
Query: 528 DLKPVNFFES 537
L P N+F+S
Sbjct: 714 MLTPFNYFDS 723
>pdb|4GEY|A Chain A, High Ph Structure Of Pseudomonas Putida Oprb
Length = 436
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 137 EHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGE---IRNVMYKGFTSELFVPYMDPTD 193
+ ++ W + EF L R+G +S R+ DP +G+ ++ V +G T L T
Sbjct: 81 QKILGWHDAEFKLAITERSGRNLSNDRISDPRAGQFSSVQEVWGRGQTWRL-------TQ 133
Query: 194 AWYFKTYMDA------GEYGFG--LQAMPLDPLN 219
W + Y D G +G G + P D N
Sbjct: 134 XWIKQKYFDGALDVKFGRFGEGEDFNSFPCDFQN 167
>pdb|4GF4|A Chain A, Low Ph Structure Of Pseudomonas Putida Oprb
Length = 436
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 137 EHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGE---IRNVMYKGFTSELFVPYMDPTD 193
+ ++ W + EF L R+G +S R+ DP +G+ ++ V +G T L T
Sbjct: 81 QKILGWHDAEFKLAITERSGRNLSNDRISDPRAGQFSSVQEVWGRGQTWRL-------TQ 133
Query: 194 AWYFKTYMDA------GEYGFG--LQAMPLDPLN 219
W + Y D G +G G + P D N
Sbjct: 134 XWIKQKYFDGALDVKFGRFGEGEDFNSFPCDFQN 167
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 293 IVDWEFQTDGLIRIKVG-------LSGILMVK-----------GTAYENMNQISNQAENL 334
IV WE L R K G L GI + + GT Y ++N QA +L
Sbjct: 72 IVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVGTGYRSLNVAIRQALDL 131
Query: 335 FGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKADRNV 394
+ + G H +DM I + V I+ SP + R +L + +
Sbjct: 132 YANIRPVRYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGI 191
Query: 395 AKTEKDAQIKLK 406
+ E DA I +K
Sbjct: 192 SIRE-DAGIGVK 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,486,315
Number of Sequences: 62578
Number of extensions: 840345
Number of successful extensions: 1773
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1571
Number of HSP's gapped (non-prelim): 40
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)