Query 046592
Match_columns 560
No_of_seqs 166 out of 674
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 00:16:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ksi_A Copper amine oxidase; P 100.0 4E-174 1E-178 1440.4 57.5 545 1-554 98-642 (642)
2 3sxx_A Peroxisomal primary ami 100.0 2E-173 8E-178 1433.4 51.7 534 1-549 116-663 (692)
3 3loy_A Copper amine oxidase; T 100.0 5E-171 2E-175 1407.1 53.4 521 1-547 100-633 (633)
4 1w6g_A Phenylethylamine oxidas 100.0 1E-169 3E-174 1402.8 52.8 535 1-556 98-636 (646)
5 1spu_A Copper amine oxidase; o 100.0 9E-164 3E-168 1376.3 51.3 530 1-547 187-726 (727)
6 1tu5_A Copper amine oxidase, l 100.0 1E-150 4E-155 1264.6 42.3 519 1-546 154-705 (746)
7 1w7c_A Lysyl oxidase; AMNE oxi 100.0 1E-149 4E-154 1255.3 45.8 508 1-546 134-692 (747)
8 3hi7_A Amiloride-sensitive ami 100.0 6E-144 2E-148 1205.5 45.4 477 48-546 174-693 (731)
9 3pgb_A Putative uncharacterize 100.0 1E-142 3E-147 1197.1 46.1 471 51-546 233-736 (797)
10 1kmt_A RHO GDP-dissociation in 14.5 3.1E+02 0.011 24.7 6.2 62 117-195 32-93 (141)
No 1
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*
Probab=100.00 E-value=3.7e-174 Score=1440.39 Aligned_cols=545 Identities=45% Similarity=0.866 Sum_probs=519.8
Q ss_pred CCHHHHHHHHHhccCCHHHHHHHHHcCCCCCCEEEccccccccCCCccceeEEEEEEEeecCCCCcccccCCCeEEEEeC
Q 046592 1 MTIEDMTSSTWAPLADEEFNRTILERGVDLKDLACLPISLGWYGEKEENRRLIKVQCYSMKDTANFYMRPIEGLTILLDM 80 (560)
Q Consensus 1 ~~~~e~~~~~~~~~~~p~~~~~~~~~gl~~~~v~~dpw~~g~~~~~~~~~Rl~~~~~~~~~~~~n~ya~Pl~gl~~~vD~ 80 (560)
++.||+.++|++|++||+|+++|++|||++++|+|+||++|+++.. +++|++|++||++.+++|+||||||||+++||+
T Consensus 98 ~~~~E~~~~e~~~~~~p~~~~~~~~~gl~~~~v~~~pw~~g~~~~~-~~~Rl~~~~~~~~~~~~n~Ya~Pl~Gl~~vvD~ 176 (642)
T 1ksi_A 98 LSVDEQSLAIKLPLKYPPFIDSVKKRGLNLSEIVCSSFTMGWFGEE-KNVRTVRLDCFMKESTVNIYVRPITGITIVADL 176 (642)
T ss_dssp CCHHHHHHHTTGGGGCHHHHHHHHHTTCCGGGEEEEEECCCCCSCS-CCCCEEEEEEEECSSCSCGGGSEECSEEEEEET
T ss_pred CCHHHHHHHHHHhhcCHHHHHHHHhcCCCccceEEecccccCCCCC-CCcEEEEEEEEEecCCCcccccccCceEEEEEC
Confidence 5789999999999999999999999999988999999999998875 379999999999988999999999999999999
Q ss_pred CCCeEEEEecCCccccCCCCCCCCCcccccCCCCCCCCCCCCeecCCCCCcEEEecCCEEeeeceEEEEeeCCCCccEEE
Q 046592 81 DTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVS 160 (560)
Q Consensus 81 ~~~~v~~~~~~~~~~~~p~~~~~~y~~~~~~~~~~r~~lkp~~i~QPeG~sF~v~~g~~V~W~~W~f~v~f~~reGlvL~ 160 (560)
.++||++|++.+. +++|+.++.+|.+....+++ |+++|||+|+||||+||+| +|++|+||||+||||||+||||+||
T Consensus 177 ~~~~V~~i~d~~~-~~~p~~~~~~y~~~~~~~~~-r~~lkP~~i~QPeG~sF~V-~G~~V~W~~W~f~vgf~~reGlvL~ 253 (642)
T 1ksi_A 177 DLMKIVEYHDRDI-EAVPTAENTEYQVSKQSPPF-GPKQHSLTSHQPQGPGFQI-NGHSVSWANWKFHIGFDVRAGIVIS 253 (642)
T ss_dssp TTTEEEEEEECCC-CCCCCCTTCCCCSTTCCSCC-CCCCCCBEEECTTCCSCEE-ETTEEEETTEEEEEEEETTTEEEEE
T ss_pred CCCEEEEEEccCC-ccCCCCCCCCccccccCCCC-CCCCCCceecCCCCCCEEE-eCcEEeeCCceEEEecCCCcccEEE
Confidence 9999999998876 67787766789988766566 9999999999999999999 9999999999999999999999999
Q ss_pred eeEEECCCCCcceeEEEeeeeeeEEeecCCCCCccccceeeecCCCCCCcCCCCCCCCCCCCCCcEEeeeeeecCCCcee
Q 046592 161 QARVRDPDSGEIRNVMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPY 240 (560)
Q Consensus 161 dV~y~d~~~g~~r~Ilyrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~~G~DCpg~~~YlD~~~~~~~G~p~ 240 (560)
||+|+|++.|++||||||+|||||+||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++++|+|+
T Consensus 254 dv~y~d~~~g~~r~V~YrlSl~Em~VPYgdP~~~~~~k~~fD~GeyG~G~~a~~L~~GcDCpg~i~Y~D~~~~~~~G~p~ 333 (642)
T 1ksi_A 254 LASIYDLEKHKSRRVLYKGYISELFVPYQDPTEEFYFKTFFDSGEFGFGLSTVSLIPNRDCPPHAQFIDTYVHSANGTPI 333 (642)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCBTTTBCTTCEEEEEEEECTTCCEE
T ss_pred EEEEecCCCCCceEEEEEeeeeeEEEeCCCCCcccccceeeeccccCccccccccccCCCCCCCCEEeeeEEecCCCCEE
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeceEEEeeecCCCceeecccCCCCCceeeeeeeceEEEEEEeEeecCcceeEEEEEccCCcEEEEEEEeEEEeecccc
Q 046592 241 VRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTA 320 (560)
Q Consensus 241 ~~~naiCi~E~d~G~~lwkH~~~~~~~~~~~~v~r~r~LVvr~i~TVgNYDY~f~~~F~~DGsIe~ev~aTGil~t~~~~ 320 (560)
+++|||||||+|.| |||||+++|+++..+++++|+|+||||+|+|||||||||+|+|||||+||+||||||||+|++++
T Consensus 334 ~~~naiCihE~d~g-ilwkH~~~r~~~~~~~~v~r~r~LVvr~i~TV~NYdYif~w~F~qdG~Ie~ev~aTGil~t~~~~ 412 (642)
T 1ksi_A 334 LLKNAICVFEQYGN-IMWRHTENGIPNESIEESRTEVNLIVRTIVTVGNADNVIDWEFKASGSIKPSIALSGILEIKGTN 412 (642)
T ss_dssp EEEEEEEEEEEEEE-EEEEEEECCSTTCCEEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCEEECS
T ss_pred EcCCEEEEEeccCC-cceeeccccCCCceeeeeeeccEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEecccc
Confidence 99999999999977 99999999986555789999999999999999999999999999999999999999999998876
Q ss_pred ccccccccccccCcccceeccCcccccceeEEeeeeecccCCCCCceEEEEEEEecCCCCCCCcceeeEEEEEEecChhh
Q 046592 321 YENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKADRNVAKTEKD 400 (560)
Q Consensus 321 ~~~~~~~~~~~~~~yG~~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~tE~e 400 (560)
+.+.++ +.+.+|||+|+|+++|++|||+|||||||||||++|||+++++++++.+.++||++++|++++++++||+|
T Consensus 413 ~~~~~~---~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~np~~~~~~~~~t~~~tE~e 489 (642)
T 1ksi_A 413 IKHKDE---IKEDLHGKLVSANSIGIYHDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESD 489 (642)
T ss_dssp CCSGGG---CCSCCSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEEEECCSSCSSCSEEEEEEEEECCBGGG
T ss_pred cccccc---cccCCCcceecCCcccccceEEEEEeeccCCCCCCCeEEEEeeEecCCCCCCCCCcceEEEEEEEccchhh
Confidence 544322 11468999999999999999999999999999999999999999999887789999999999999999999
Q ss_pred HhhhcCCCCCcEEEEecCCCCCCCCCceeEEEeeCCCcccCCCCCCcccccccccccceEEeecCCCccccCCcCccCCC
Q 046592 401 AQIKLKLYDPAEFHVINPTKKTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSK 480 (560)
Q Consensus 401 a~~~~~~~~~r~~~ivN~~~~N~~G~p~gYki~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~a~g~y~~q~~ 480 (560)
|++++++. +|+|+|+|++++|++|+|+||||+|++++++|++++|+.++||+||+||||||||+|+|+||+|.|++|++
T Consensus 490 a~~~~~~~-~r~~~i~N~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~Ra~fa~~~lwVT~y~d~E~~a~g~y~~qs~ 568 (642)
T 1ksi_A 490 AKITIGLA-PAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTEKWAGGLYVDHSR 568 (642)
T ss_dssp GCBCTTSS-CEEEEEEEEEEECTTSCEEEEEEECCSCCCCCSCTTSHHHHHTGGGGCSEEEEECCTTCCCTTCSCCBTCC
T ss_pred hhhccCCC-ceEEEEEcCCCcCCCCCeeeEEEccCCcccccCCCcchhhhhhhccccceEEecCCCCccCCCCCCccCCC
Confidence 99999998 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhcccccCCCcccCCcEEEEEeccccCCCCCCCCCccceeeeeEEEecCCCCCCCCCCCCCCCCCCCCcc
Q 046592 481 GEDTLAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKDLPVC 554 (560)
Q Consensus 481 ~~~gl~~~~~~~e~i~~eDiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~~~~~~~~~~ 554 (560)
+++|+..|+++||+|+|||||||||||+||+||+|||||||++++||+|||+|||++||+||+|++..+++|+|
T Consensus 569 ~~~gl~~~~~~~~~i~~~DiV~W~t~G~~H~Pr~ED~PvMp~~~~~f~L~P~nFF~~nP~ldvp~~~~~~~~~~ 642 (642)
T 1ksi_A 569 GDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLSPRDVAWPGC 642 (642)
T ss_dssp SSSSHHHHGGGCCBCSSBCEEEEEEEEEEECCCGGGSSSCCCEEEECEEEESSCSSSCTTTTCCCCCBCCCCCC
T ss_pred CCCChhhhhhCCCccccCCcEEEEecccccCCChhhCCCCccceEEEEEEeCCCCCCCCCccCCCCccCCCCCC
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*
Probab=100.00 E-value=2.5e-173 Score=1433.37 Aligned_cols=534 Identities=27% Similarity=0.472 Sum_probs=502.4
Q ss_pred CCHHHHHHHHHhccCCHHHHHHHHHcCCC---CCCEEEccccccccCCCccceeEEEEEEEeec-CCCCcccccCCCeEE
Q 046592 1 MTIEDMTSSTWAPLADEEFNRTILERGVD---LKDLACLPISLGWYGEKEENRRLIKVQCYSMK-DTANFYMRPIEGLTI 76 (560)
Q Consensus 1 ~~~~e~~~~~~~~~~~p~~~~~~~~~gl~---~~~v~~dpw~~g~~~~~~~~~Rl~~~~~~~~~-~~~n~ya~Pl~gl~~ 76 (560)
|+.|||.+||++|++||+|++||+||||+ +++|+||||++||++..+.++||+|++||+|. +++|+|||||+ |++
T Consensus 116 ~~~ee~~~~e~~~~~~p~~~~a~~~rgl~~~~~~~V~~dpw~~G~~~~~~~~~Rl~~~~~y~r~~~~~N~Ya~Pl~-~~~ 194 (692)
T 3sxx_A 116 LTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLD-FCP 194 (692)
T ss_dssp CCHHHHHTHHHHHHHCHHHHHHHHHTTCCGGGGGGEEEEEEECCCCTTTTTSSCEEEEEEEECSSTTSCGGGCBCS-CEE
T ss_pred cCHHHHHHHHHHHHhCHHHHHHHHHcCCCccccceEEEccccccccCCCCCCceEEEEEEEEecCCCCCcccccce-eEE
Confidence 68999999999999999999999999994 46699999999999976668999999999996 58999999999 999
Q ss_pred EEeCCCCeEEEEecCCccccCCCCCCCCCcccccC--CCCCCC-CCCCCeecCCCCCcEEEecCCEEeeeceEEEEeeCC
Q 046592 77 LLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQG--LHQRMK-LINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDP 153 (560)
Q Consensus 77 ~vD~~~~~v~~~~~~~~~~~~p~~~~~~y~~~~~~--~~~~r~-~lkp~~i~QPeG~sF~v~~g~~V~W~~W~f~v~f~~ 153 (560)
+||++++||++|++.+...|+|+....+|.++.+. +++ |+ |+|||+|+||||+||+| +|++|+||||+||||||+
T Consensus 195 vvD~~~~~vi~id~~~~~~p~~~~~~~~Y~p~~~~~~~~~-r~~d~kP~~i~QPeG~sF~v-~g~~V~W~~W~F~vgf~~ 272 (692)
T 3sxx_A 195 IVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGA-MRPEAPPINVTQPEGVSFKM-TGNVMEWSNFKFHIGFNY 272 (692)
T ss_dssp EEETTTTEEEEEECCSSCCCCCCSCCCCCSHHHHHHHHSS-CCCCCCCCEEECTTCCSCEE-ETTEEEETTEEEEEEEET
T ss_pred EEECCCCEEEEEecCCCCCCCCCCCCCCCChHHccccCCC-CCCCCCCceecCCCCCcEEE-cCCeEEecCcEEEEecCC
Confidence 99999999999998876457777777899988654 456 88 99999999999999999 999999999999999999
Q ss_pred CCccEEEeeEEECCCCCcceeEEEeeeeeeEEeecCCCCCccccceeeecCCCCCCcCCCCCCCCCCCCCCcEEeeeeee
Q 046592 154 RAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFP 233 (560)
Q Consensus 154 reGlvL~dV~y~d~~~g~~r~Ilyrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~~G~DCpg~~~YlD~~~~ 233 (560)
||||+||||+|+| +|+.||||||+|||||+||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++.
T Consensus 273 reGlvL~dV~y~~--~g~~R~V~YrlSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~YlD~~~~ 350 (692)
T 3sxx_A 273 REGIVLSDVSYND--HGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFS 350 (692)
T ss_dssp TTEEEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCSTTGGGCEECHHHHTCTTTTBCCCTTTTTSCSSCEEEEEEEE
T ss_pred CCceEEEEEEEcC--CCcceeeeeeeehheeEEecCCCCchhhhheeeeccccCCCccccccccCCCCCCCcEEeeeEEe
Confidence 9999999999998 67889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEeeceEEEeeecCCCceeecccCCCCCceeeeeeeceEEEEEEeEeecCcceeEEEEEccCCcEEEEEEEeEE
Q 046592 234 AADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGI 313 (560)
Q Consensus 234 ~~~G~p~~~~naiCi~E~d~G~~lwkH~~~~~~~~~~~~v~r~r~LVvr~i~TVgNYDY~f~~~F~~DGsIe~ev~aTGi 313 (560)
+++|+|++++|||||||+|+| |||||+++|+.. ..++|+|+|+||||+|+|||||||||+|+|||||+||+|||||||
T Consensus 351 ~~~G~p~~~~NaICihE~d~G-il~kHt~~r~~~-~~~~v~r~r~LVvr~i~TVgNYDYif~w~F~qdG~Ie~ev~aTGi 428 (692)
T 3sxx_A 351 DRAGDPITVKNAVCIHEEDDG-LLFKHSDFRDNF-ATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGI 428 (692)
T ss_dssp CTTSCEEEEEEEEEEEEEEEE-EEEEEECGGGTT-CSEEEEEEEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEEC
T ss_pred cCCCCEEEecceEEEeeccCC-ceEEeeeccCCC-ceeeEEeccEEEEEEeeeccceeEEEEEEEecCCeEEEEEEEEEE
Confidence 999999999999999999999 999999998631 257899999999999999999999999999999999999999999
Q ss_pred Eeeccccccccccccccc-cCcccceeccCcccccceeEEeeeeecccCCCCCceEEEEEEEecCC--CCCCCcceeeEE
Q 046592 314 LMVKGTAYENMNQISNQA-ENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVNIKRQETS--PGESPRRSYLKA 390 (560)
Q Consensus 314 l~t~~~~~~~~~~~~~~~-~~~yG~~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~--~~~~p~~~~~~~ 390 (560)
|++.+. . ++. ..+|||+|+|+++|++|||+|||||||||||.+|||+++++++++.+ .+.||++|+|++
T Consensus 429 l~t~~~---~-----~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~~~np~g~~~~~ 500 (692)
T 3sxx_A 429 LNTYIL---G-----DDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYS 500 (692)
T ss_dssp CCCEEC---C-----TTCCCTTTEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEECSSCTTBTTBTTSCCEEE
T ss_pred EEeeee---C-----CCcccCCCcceecCCccccceeEEEEEEeccccCCCCceEEEEEeEEccCCCCCCCCCCcceeEE
Confidence 998662 1 121 36899999999999999999999999999999999999999999875 346999999999
Q ss_pred EEEEecChhhHhhhcCCCCCcEEEEecCCCCCCC-CCceeEEEeeCCCcccCCCCCCcccccccccccceEEeecCCCcc
Q 046592 391 DRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRV-GNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQ 469 (560)
Q Consensus 391 ~~~~~~tE~ea~~~~~~~~~r~~~ivN~~~~N~~-G~p~gYki~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~ 469 (560)
++++++||+||+++++++++|+|+|+|++++|++ |+|+||||+|++++++|+.++|+..+||+||+||||||||+|+|+
T Consensus 501 ~~t~~~tE~ea~~~~~~~~~R~~~i~N~~~~N~~sG~pvgYkL~p~~~~~ll~~~~s~~~~ra~fa~~~lwVT~y~d~E~ 580 (692)
T 3sxx_A 501 EKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRL 580 (692)
T ss_dssp EEEECCBHHHHCBCCCGGGTCEEEEECTTCCCTTTCSCCEEEEECCCCCCCCSCTTSHHHHHCGGGGSSEEEEECCTTCC
T ss_pred EEEEccchhhhhhccCCCCCcEEEEeCCCCcCCCCCccceEEEecCCCCcccCCCCchhhhhchhcccceEEecCCCCcc
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccCCCCC--CChhccc-ccCCCcccCCcEEEEEeccccCCCCCCCCCccceeeeeEEEecCCCCCCCCCCCCCC
Q 046592 470 WAGGLFVYQSKGE--DTLAVWS-DRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPN 546 (560)
Q Consensus 470 ~a~g~y~~q~~~~--~gl~~~~-~~~e~i~~eDiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~~ 546 (560)
||+|.|+||+.++ .||+.|+ ++||+|+|||||||||||+||+||+|||||||++++||+|||+|||++||+||+|++
T Consensus 581 ~aag~y~nQs~g~p~~gl~~w~~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMP~~~~gf~LrP~nFFd~NPaldvp~~ 660 (692)
T 3sxx_A 581 YPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPS 660 (692)
T ss_dssp CTTCSSCTTCCSCSSCHHHHHHTTSCSBCSSBCEEEEEEEEEEECCCGGGSSSCCCEEEEEEEEEESSSSSCTTTTSCCS
T ss_pred CCCCCCccCCCCCCCCChHHHhhcCCceeecCceEEEEecCcccCCchhcCCCCcceEEEEEEECCCcCCCCCcccCCCc
Confidence 9999999999987 7999999 899999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 046592 547 VEK 549 (560)
Q Consensus 547 ~~~ 549 (560)
.+.
T Consensus 661 ~~~ 663 (692)
T 3sxx_A 661 YAM 663 (692)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 3
>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}
Probab=100.00 E-value=5.4e-171 Score=1407.09 Aligned_cols=521 Identities=28% Similarity=0.506 Sum_probs=489.9
Q ss_pred CCHHHHHHHHHhccCCHHHHHHHHHcCCC-CCCEEEccccccccCCCccceeEEEEEEEee---cCCCCcccccCCCeEE
Q 046592 1 MTIEDMTSSTWAPLADEEFNRTILERGVD-LKDLACLPISLGWYGEKEENRRLIKVQCYSM---KDTANFYMRPIEGLTI 76 (560)
Q Consensus 1 ~~~~e~~~~~~~~~~~p~~~~~~~~~gl~-~~~v~~dpw~~g~~~~~~~~~Rl~~~~~~~~---~~~~n~ya~Pl~gl~~ 76 (560)
|+.|||.+||++|++||+|+|||+||||+ .++|+||||++|+++ ++++||+||+||+| ++++|+|||||+ |++
T Consensus 100 ~~~~e~~~~e~~~~~~p~~~~a~~~~gl~~~~~V~~dpw~~G~d~--~~~~Rl~q~~~y~r~~~~~~~N~Ya~Pl~-~~~ 176 (633)
T 3loy_A 100 LIAEDIQEIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDS--KEDRMLIQCYMYLASAAHPESNHYSLPLK-FSP 176 (633)
T ss_dssp CCHHHHHHHHHHHTTSHHHHHHHHTTCCCTTEEEEEEEEECCCSS--CCCSCEEEEEEEEEETTCTTCCGGGSBCS-EEE
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCceEEEeccccccCC--CCCcEEEEEEEEEecCCCCCccccccccc-eEE
Confidence 68899999999999999999999999995 488999999999966 46899999999998 468999999998 899
Q ss_pred EEeCCCCeEEEEecCCcc-----c---cCCCCCCCCCcccccCCCCCCCCCCCCeecCCCCCcEEEecCCEEeeeceEEE
Q 046592 77 LLDMDTKEVLEITDKGKN-----I---PIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSFVIEDEHLVKWANWEFH 148 (560)
Q Consensus 77 ~vD~~~~~v~~~~~~~~~-----~---~~p~~~~~~y~~~~~~~~~~r~~lkp~~i~QPeG~sF~v~~g~~V~W~~W~f~ 148 (560)
+||++++||++|++.... . |+++....+|.++.+.+ + |+++|||+|+||||+||+| +|++|+||||+||
T Consensus 177 vvD~~~~~vi~id~~~~g~~~~~~~~~p~~~~~~~~Y~p~~~~~-~-r~d~kp~~i~QPeG~sF~v-~g~~V~W~~W~f~ 253 (633)
T 3loy_A 177 VFECLTKKFVRMDYLPGGADETVTETQAWDEFPFVEYHPDLNGE-T-IVPLKPLIVQQPEGPSFNV-DGHKISWQGWEFF 253 (633)
T ss_dssp EEETTTCCEEEEEECCCSSSSCCCSCCCCCCCCCCCCSTTTSCC-C-CCCCCCCEEECTTCCSEEE-ETTEEEETTEEEE
T ss_pred EEECCCCEEEEEEecCcCcccccccccCCCCCCCCCcChhHccc-c-cCCCCCcceeCCCCCCEEE-cCCccccCCcEEE
Confidence 999999999999986321 1 23444568999887654 5 9999999999999999999 9999999999999
Q ss_pred EeeCCCCccEEEeeEEECCCCCcceeEEEeeeeeeEEeecCCCCCccccceeeecCCCCCCcCCCCCCCCCCCCCCcEEe
Q 046592 149 LKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYM 228 (560)
Q Consensus 149 v~f~~reGlvL~dV~y~d~~~g~~r~Ilyrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~~G~DCpg~~~Yl 228 (560)
||||+||||+||||+|+| ||||||+|||||+||||||+++|++|+|||+||||+|.+||+|++||||||+|+||
T Consensus 254 vgf~~reGlvL~dv~y~g------r~V~YrlSl~Em~VPYgdp~~p~~~k~afD~GeyG~G~~a~~L~~GcDCpg~i~Yl 327 (633)
T 3loy_A 254 VIPTVREGFAIYDIHFKG------RSVVYRLSLSEMTVPYGDPRAPFHRKQAFDLGDCGFGATGNSLALGCDCLGVIKYM 327 (633)
T ss_dssp EEEETTTEEEEEEEEETT------EEEEEEEEEEEEEEEBCCCSTTGGGCEEEHHHHTCTTTTBCCSTTTTCSCSSEEEE
T ss_pred EecCCCcCcEEEeeEECC------EEEEEEEEeeeEEEeCCCCCChhhhheeecccccCccccccCCccCCCCCCCcEEe
Confidence 999999999999999976 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCceeEeeceEEEeeecCCCceeecccCCCCCceeeeeeeceEEEEEEeEeecCcceeEEEEEccCCcEEEEE
Q 046592 229 DGVFPAADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKV 308 (560)
Q Consensus 229 D~~~~~~~G~p~~~~naiCi~E~d~G~~lwkH~~~~~~~~~~~~v~r~r~LVvr~i~TVgNYDY~f~~~F~~DGsIe~ev 308 (560)
|+++.+++|+|++++|||||||+|+| ++|||+++|+ +.++++|+|+||||+|+|||||||||+|+|||||+||+||
T Consensus 328 D~~~~~~~G~p~~~~naICihE~d~G-i~~kHt~~r~---~~~~v~r~r~LVvr~i~TVgNYdYif~w~F~~dG~Ie~ev 403 (633)
T 3loy_A 328 DCRRVNTNGDSVLIPNTVCLHEQDGG-LLYKHTNYRT---NVPVIARRREFVVQTIATVANAEYMLNIIFDQAGEIRIHV 403 (633)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEEEE-EEEEEECTTT---CCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEE
T ss_pred eeEEecCCCCEEEecceEEEEeccCC-ceeeeccccC---CceeEEEeeEEEEEEEeeccceeEEEEEEEecCCeEEEEE
Confidence 99999999999999999999999999 9999999986 4568899999999999999999999999999999999999
Q ss_pred EEeEEEeeccccccccccccccccCcccceeccCcccccceeEEeeeeecccCCCCCceEEEEEEEecCCCCCCCcceee
Q 046592 309 GLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYL 388 (560)
Q Consensus 309 ~aTGil~t~~~~~~~~~~~~~~~~~~yG~~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~p~~~~~ 388 (560)
||||||++.+. .++++.+|||+|+|+++|++|||+|||||||||||++|||+++++++++.++..||++++|
T Consensus 404 ~aTGil~t~~~--------~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~~~nP~g~~~ 475 (633)
T 3loy_A 404 RATGILSTMPL--------DKDVTVPWGTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVVFDDVIRMEKNTKLNPYNVGF 475 (633)
T ss_dssp EEEECCCCEEC--------CTTCCCTTEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEECCSSSSSSTTSCCE
T ss_pred EEEEEEeeeec--------CCcccCCCcceecCCccccceeEEEEEEecccccCCCCEEEEEeeeecCCCCCCCCCCcce
Confidence 99999997651 1122579999999999999999999999999999999999999999998876679999999
Q ss_pred EEEEEEecChhhHhhhcCCCCCcEEEEecCCCCCCC-CCceeEEEeeCCCcccCCCCCCcccccccccccceEEeecCCC
Q 046592 389 KADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRV-GNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNES 467 (560)
Q Consensus 389 ~~~~~~~~tE~ea~~~~~~~~~r~~~ivN~~~~N~~-G~p~gYki~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~ 467 (560)
+++++++++| |+++++++++|+|+|+|++++|++ |+|+||||+|++++++|+.++|+.++||+||+||||||||+|+
T Consensus 476 ~~~~t~l~~e--a~~~~~~~~~r~~~i~N~~~~N~~~G~p~gYkl~p~~~~~ll~~~~s~~~~Ra~fa~~~lwVT~y~d~ 553 (633)
T 3loy_A 476 VTERTVVEKP--GYVEQSPFTNRSYKIINENKINPISKKPVAYKIMMPARQMLLADEDSYNNKRAQFATQQVWVTKYRDN 553 (633)
T ss_dssp EEEEEECCSS--EEECCCGGGTCEEEEEEEEEECTTTCSEEEEEEECCCCCCCCSCSSSHHHHHCGGGGSSEEEEECCTT
T ss_pred EEEEEEeccc--cccccCCCCccEEEEECCCCcCCCCCccceEEEccCCCCcccCCCCchhhhccchhhcceEEecCCCC
Confidence 9999999886 789999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred ccccCCcCccCCCCCCChhcccccCCCcccCCcEEEEEeccccCCCCCCCCCccceeeeeEEEecCCCCCCCCCCCCCCC
Q 046592 468 EQWAGGLFVYQSKGEDTLAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNV 547 (560)
Q Consensus 468 E~~a~g~y~~q~~~~~gl~~~~~~~e~i~~eDiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~~~ 547 (560)
|+||+|.|+||+.+++||++|+++||+|+|||||||+|||+||+||+|||||||++++||+|||+|||++||+||||+++
T Consensus 554 E~~aag~y~nQs~~~~gl~~w~~~~e~i~n~DiV~W~t~G~~HiPr~ED~PvMP~~~~~f~LrP~nFFd~nP~ldvp~s~ 633 (633)
T 3loy_A 554 ELYAAGEFTNQSQTDTGLGVWARRDENVRNDNPVVWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFDKNPALSVPQST 633 (633)
T ss_dssp CCCTTCSCCTTCSSCCSHHHHTTCCCCCTTBCEEEEEEEEEEECCCGGGCSSEEEEEEEEEEEEESSSSSCGGGGSCCCC
T ss_pred ccccCCCCccCCCCCCChHHHhcCCCccccCceEEEEecCcccCCCcccCCCCccceeeEEEEcCCcCCCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
No 4
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...
Probab=100.00 E-value=9.9e-170 Score=1402.80 Aligned_cols=535 Identities=28% Similarity=0.505 Sum_probs=498.2
Q ss_pred CCHHHHHHHHHhccCCHHHHHHHHHcCCC-CCCEEEccccccccCCC-ccceeEEEEEEEeec-CCCCcccccCCCeEEE
Q 046592 1 MTIEDMTSSTWAPLADEEFNRTILERGVD-LKDLACLPISLGWYGEK-EENRRLIKVQCYSMK-DTANFYMRPIEGLTIL 77 (560)
Q Consensus 1 ~~~~e~~~~~~~~~~~p~~~~~~~~~gl~-~~~v~~dpw~~g~~~~~-~~~~Rl~~~~~~~~~-~~~n~ya~Pl~gl~~~ 77 (560)
++.||+.++|++|+++|+|+++|++|||+ +++|+| ||++||+++. +.++|++|++||+|. +++|+|+|||+||+++
T Consensus 98 ~~~~E~~~~e~~~~~~p~~~~~i~~~gl~~~~~v~~-pw~~g~~~~~~~~~~Rl~~~~~~~r~~~~~n~Ya~Pl~gl~~v 176 (646)
T 1w6g_A 98 VLEEEFEVVEQLLATDERWLKALAARNLDVSKVRVA-PLSAGVFEYAEERGRRILRGLAFVQDFPEDSAWAHPVDGLVAY 176 (646)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHHTTCCGGGEEEE-EEECCCCSCGGGTTSCEEEEEEEECSSTTCCGGGSBCTTEEEE
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCeeEE-eecccccCCccCCCcEEEEEEEEEecCCCCCccccccCceEEE
Confidence 57899999999999999999999999996 467999 9999987754 458999999999985 5899999999999999
Q ss_pred EeCCCCeEEEEecCCccccCCCCCCCCCcccccCCCCCCCCCCCCeecCCCCCcEEEec-CCEEeeeceEEEEeeCCCCc
Q 046592 78 LDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSFVIED-EHLVKWANWEFHLKPDPRAG 156 (560)
Q Consensus 78 vD~~~~~v~~~~~~~~~~~~p~~~~~~y~~~~~~~~~~r~~lkp~~i~QPeG~sF~v~~-g~~V~W~~W~f~v~f~~reG 156 (560)
||+.++||++|++++. ++.|. ...+|.+++..+++ |+++|||+|+||||+||+| + |++|+||||+||||||+|||
T Consensus 177 vD~~~~~Vi~v~~~~~-~~~p~-~~~~y~~~~~~~~~-r~~lkP~~i~QPeGpsF~V-~~G~~V~W~~W~F~vgfn~ReG 252 (646)
T 1w6g_A 177 VDVVSKEVTRVIDTGV-FPVPA-EHGNYTDPELTGPL-RTTQKPISITQPEGPSFTV-TGGNHIEWEKWSLDVGFDVREG 252 (646)
T ss_dssp EETTTTEEEEEEECCC-CCCCC-SCCCTTCHHHHCSC-CCCCCCCCCCCTTCCSCEE-ETTTEEEETTEEEEEEEETTTE
T ss_pred EECCCCEEEEEEeCCc-cCCCC-CCCccchhhcCCCc-CCCCCCceecCCCCCceEE-eCCCEEEeCCCEEEEecCCCcc
Confidence 9999999999999986 46665 45799887654455 9999999999999999999 8 99999999999999999999
Q ss_pred cEEEeeEEECCCCCcceeEEEeeeeeeEEeecCCCCCccccceeeecCCCCCCcCCCCCCCCCCCCCCcEEeeeeeecCC
Q 046592 157 AIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAAD 236 (560)
Q Consensus 157 lvL~dV~y~d~~~g~~r~Ilyrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~~G~DCpg~~~YlD~~~~~~~ 236 (560)
|+||||+|+| .|+.||||||+|||||+||||||+++|++|+|||+||||+|.+||+|+|||||||+|+|||+++++++
T Consensus 253 lvL~dV~y~~--~g~~R~V~YrlSlsEm~VPYgdp~p~~~~k~afD~GeyG~G~~an~L~lGcDCpg~i~Y~D~~~~~~~ 330 (646)
T 1w6g_A 253 VVLHNIAFRD--GDRLRPIINRASIAEMVVPYGDPSPIRSWQNYFDTGEYLVGQYANSLELGCDCLGDITYLSPVISDAF 330 (646)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCCTTTTTCEEECCCCCCGGGGBCCCCBTTTBCSSCEEECCEEECTT
T ss_pred eEEEEEEEcC--CCCceEEEEEeeeeEEEEeCCCCCchhhcceeeeccCcCCcccccccccCCCCCCCCEEEeEEEEcCC
Confidence 9999999998 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeeceEEEeeecCCCceeecccCCCCCceeeeeeeceEEEEEEeEeecCcceeEEEEEccCCcEEEEEEEeEEEee
Q 046592 237 GTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMV 316 (560)
Q Consensus 237 G~p~~~~naiCi~E~d~G~~lwkH~~~~~~~~~~~~v~r~r~LVvr~i~TVgNYDY~f~~~F~~DGsIe~ev~aTGil~t 316 (560)
|+|++++|||||||+|+| |||||+++|+ +.++|+|+|+||||+|+|||||||||+|+|||||+||++|||||||+|
T Consensus 331 G~p~~~~naICihE~d~G-ilwkH~~~r~---~~~~v~r~r~LVvr~i~Tv~NYdYi~~w~F~~dG~Ie~ev~aTGil~t 406 (646)
T 1w6g_A 331 GNPREIRNGICMHEEDWG-ILAKHSDLWS---GINYTRRNRRMVISFFTTIGNADYGFYWYLYLDGTIEFEAKATGVVFT 406 (646)
T ss_dssp SCEEECTTCEEEEEEEEE-EEEEEECTTT---CCEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCC
T ss_pred CCEEEcCCEEEEeeccCC-cceeeecccC---CceeeecccEEEEEEEeeccccceEEEEEEecCCeEEEEEEEEEEEee
Confidence 999999999999999999 9999999987 367899999999999999999999999999999999999999999998
Q ss_pred ccccccccccccccccCcccceeccCcccccceeEEeeeeecccCCCCCceEEEEEEEecCCCCCCCcceeeEEEEEEec
Q 046592 317 KGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKADRNVAK 396 (560)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~yG~~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 396 (560)
++.. ++ +.+|||+|+|+++|++|||+|+|||||||||++|||+++++++++.+ +.||++++|++++++++
T Consensus 407 ~~~~--------~~-~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~-~~np~~~~~~~~~t~~~ 476 (646)
T 1w6g_A 407 SAFP--------EG-GSDNISQLAPGLGAPFHQHIFSARLDMAIDGFTNRVEEEDVVRQTMG-PGNERGNAFSRKRTVLT 476 (646)
T ss_dssp EECC--------TT-CCSSEEEEETTEEEECEEEEEEEEEEECTTSSCBEEEEEEEEECCSB-TTBTTSCCEEEEEEEEC
T ss_pred eecC--------Cc-cCCCcceecCCcccccceEEEEEeecccccCCCCEEEEEeeEeccCC-CCCCCCceeEEEEEEcc
Confidence 7621 11 46899999999999999999999999999999999999999998876 47999999999999999
Q ss_pred ChhhHhhhcCCCCCcEEEEecCCCCCCCCCceeEEEeeCCCcccCCCCCCcccccccccccceEEeecCCCccccCCcCc
Q 046592 397 TEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFV 476 (560)
Q Consensus 397 tE~ea~~~~~~~~~r~~~ivN~~~~N~~G~p~gYki~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~a~g~y~ 476 (560)
+|+||++++++.++|+|+|+|++++|++|+|+||||+|++++.+|++++|+..+||+||+||||||||+|+|+||+|.|+
T Consensus 477 tE~ea~~~~~~~~~r~~~i~N~~~~N~~G~p~gYkl~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~y~ 556 (646)
T 1w6g_A 477 RESEAVREADARTGRTWIISNPESKNRLNEPVGYKLHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDFV 556 (646)
T ss_dssp BGGGCEECCCGGGTCEEEEEEEEEECTTSCEEEEEEEECCCCCCCSCTTSHHHHHTGGGGSSEEEEECCTTCCCTTCSCC
T ss_pred chhhhhhccCCCCCcEEEEeCCCCcCCCCCeeeEEEccCCcccccCCCCccccccccccccceEEeccCCCccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhcccccCCCcccCCcEEEEEeccccCCCCCCCCCccceeeeeEEEecCCCCCCCCCCCCCCCCCCCCcccc
Q 046592 477 YQSKGEDTLAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNVEKDLPVCKA 556 (560)
Q Consensus 477 ~q~~~~~gl~~~~~~~e~i~~eDiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~~~~~~~~~~~~ 556 (560)
||+.+++||+.|+++||+|+|||||||||||+||+||+|||||||++++||+|||+|||++||+||+|++.+....-|..
T Consensus 557 nQs~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~PvMP~~~~~f~L~P~nFF~~nP~ldvp~~~~~~~~~~~~ 636 (646)
T 1w6g_A 557 NQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPSQSGSHCHG 636 (646)
T ss_dssp BTCCSSSSHHHHHTTCCBCTTBCEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEESSCSSSCTTTTCCCC----------
T ss_pred ccCCCCCChhHHhhCCCCcccCceEEEEeCccccCCCccccCCCCCceEEEEEEecCcCCCCCCccCCCccccccccccc
Confidence 99999899999999999999999999999999999999999999999999999999999999999999997753324543
No 5
>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*
Probab=100.00 E-value=9.4e-164 Score=1376.31 Aligned_cols=530 Identities=32% Similarity=0.629 Sum_probs=487.9
Q ss_pred CCHHHHHHHHHhccCCHHHHHHHHHcCC-CCCCEEEccccccccCCC---ccceeEEEEEEEeecCCCCcccccCCCeEE
Q 046592 1 MTIEDMTSSTWAPLADEEFNRTILERGV-DLKDLACLPISLGWYGEK---EENRRLIKVQCYSMKDTANFYMRPIEGLTI 76 (560)
Q Consensus 1 ~~~~e~~~~~~~~~~~p~~~~~~~~~gl-~~~~v~~dpw~~g~~~~~---~~~~Rl~~~~~~~~~~~~n~ya~Pl~gl~~ 76 (560)
++.||+.++|++|++||+|+++|+|||| ++++|+||||++|+++.. ++++|++|++||+..+++|+|||||+||++
T Consensus 187 ~~~~e~~~~e~~~~~~p~~~~~~~~~gl~~~~~v~~dpw~~g~~~~~~~~~~~~R~~~~~~~~~~~~~n~Ya~Pl~g~~~ 266 (727)
T 1spu_A 187 VLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVA 266 (727)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHTTCSCTTSEEEEEECCCCCTTTTCCCSSSCEEEEEEEECCSSSCGGGSBCTTEEE
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHhCCCccceEEEccccccccCCCCCCCCCcEEEEEEEEEECCCCCccccCccceEE
Confidence 5789999999999999999999999999 578999999999998733 247999999999977789999999999999
Q ss_pred EEeCCCCeEEEEecCCccccCCCCCCCCCcccccCCCCCCCCCCCCeecCCCCCcEEEecCCEEeeeceEEEEeeCCCCc
Q 046592 77 LLDMDTKEVLEITDKGKNIPIPKAVNTDYRYSAQGLHQRMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAG 156 (560)
Q Consensus 77 ~vD~~~~~v~~~~~~~~~~~~p~~~~~~y~~~~~~~~~~r~~lkp~~i~QPeG~sF~v~~g~~V~W~~W~f~v~f~~reG 156 (560)
++|++++||++|++.+. .++|... .+|.+.. +. |+++|||+|+||||+||+| +|++|+||||+||||||+|||
T Consensus 267 vvD~~~~~V~~i~~~~~-~~~p~~~-~~y~~~~---~~-r~~lkP~~i~QPeG~sF~v-~g~~V~W~~W~F~vgf~~reG 339 (727)
T 1spu_A 267 VVDLEQKKIVKIEEGPV-VPVPMTA-RPFDGRD---RV-APAVKPMQIIEPEGKNYTI-TGDMIHWRNWDFHLSMNSRVG 339 (727)
T ss_dssp EEETTTTEEEEEEECCC-CCCCCSC-CCSSSTT---EE-CCCCCCCEEECTTCCSEEE-ETTEEEETTEEEEEEEETTTE
T ss_pred EEecccCEEEEEEcCCc-cccCCCC-CCccccc---cc-cCCCCCccccCCCCCCEEE-CCCccccCCcEEEEecCCCCc
Confidence 99999999999999875 6666543 5688664 34 9999999999999999999 999999999999999999999
Q ss_pred cEEEeeEEECCCCCcceeEEEeeeeeeEEeecCCCCCccccceeeecCCCCCCcCCCCCCCCCCCCCCcEEeeeeeecCC
Q 046592 157 AIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAAD 236 (560)
Q Consensus 157 lvL~dV~y~d~~~g~~r~Ilyrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~~G~DCpg~~~YlD~~~~~~~ 236 (560)
|+||||+|+| .|+.||||||+|||||+||||||+++|++|+|||+||||+|.+||+|++||||||+|+|||+++++++
T Consensus 340 lvL~dV~y~~--~g~~r~V~YrlSl~Em~VPYgdp~~~~~~k~~fD~GeyG~G~~a~~L~lGcDCpg~i~Y~D~~~~~~~ 417 (727)
T 1spu_A 340 PMISTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYT 417 (727)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEEEEEEEEEBCCCSTTTTTCEECHHHHHCTTTTBCCCCTTTTSCTTCEEEEEEEECTT
T ss_pred eEEEEEEEcC--CCceEEEEEEeEeeEEEEeCCCCCCchhcceeeeccCcCCcccccccccCCCCCCCCEEeeeEEEcCC
Confidence 9999999998 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeeceEEEeeecCCCceeecccCCCCCceeeeeeeceEEEEEEeEeecCcceeEEEEEccCCcEEEEEEEeEEEee
Q 046592 237 GTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMV 316 (560)
Q Consensus 237 G~p~~~~naiCi~E~d~G~~lwkH~~~~~~~~~~~~v~r~r~LVvr~i~TVgNYDY~f~~~F~~DGsIe~ev~aTGil~t 316 (560)
|+|++++|||||||+|+| |||||++++.. ..++|+|+||||+|+|||||||||+|+|||||+||+||||||||+|
T Consensus 418 G~p~~~~naiCi~E~d~G-~l~kH~~~~~~----~~~~r~r~LVv~~i~Tv~NYdYi~~w~F~~dG~I~~ev~aTGil~~ 492 (727)
T 1spu_A 418 GVPMEIPRAIAVFERYAG-PEYKHQEMGQP----NVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAV 492 (727)
T ss_dssp SCEEEEEEEEEEEEEEEE-EEEEECCTTSC----CEEEEEEEEEEEEEEEETTEEEEEEEEEETTSCEEEEEEEEECCCE
T ss_pred CCEEEeCCeEEEecccCC-cceeeeccCCC----ceeeeceEEEEEEEEeecccceEEEEEEecCceEEEEEEEEEEEEe
Confidence 999999999999999999 99999999742 3467999999999999999999999999999999999999999998
Q ss_pred ccccccccccccccccCcccceeccCcccccceeEEeeeeecccCCCCCceEEEEEEEecCCCCCCCcceeeEEEEEEec
Q 046592 317 KGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVNIKRQETSPGESPRRSYLKADRNVAK 396 (560)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~yG~~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 396 (560)
+++.+....+.......+|||+|+|+++|++|||+|||||||||||++|||+++++++++.++ .||++++|++++++++
T Consensus 493 ~~~~~t~~~~~~~~~~~~yGt~v~~~~~a~~HqH~f~~RlD~dVdG~~Nsv~~~d~~~~~~~~-~np~~~~~~~~~t~~~ 571 (727)
T 1spu_A 493 KGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTA-GGPRTSTMQVNQYNIG 571 (727)
T ss_dssp EECSCSSTTSTTHHHHTTTEEEEETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEECCS-CSSCSEEEEEEEEEEC
T ss_pred ccccccccccccccccCCCcceecCCcccccceeEEEEeecccccCCCCeEEEEeeEEccCCC-CCCCCceeEEEEEEcc
Confidence 764322211100001368999999999999999999999999999999999999999988764 5999999999999999
Q ss_pred ChhhHhhhcCCCCCcEEEEecCCCCCCCCCceeEEEeeC--CC----cccCCCCCCcccccccccccceEEeecCCCccc
Q 046592 397 TEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGYKVVPG--GT----AASLLDREDPPQKRGAFTNNQIWVTPYNESEQW 470 (560)
Q Consensus 397 tE~ea~~~~~~~~~r~~~ivN~~~~N~~G~p~gYki~p~--~~----~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~ 470 (560)
+|+||++++++.++|+ |+|++++|++|+|+||||+|. .+ +.+++.++|+.++||+||+||||||||+|+|+|
T Consensus 572 tE~~a~~~~~~~~~r~--i~n~~~~N~~G~p~gYkl~~~~~~~~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~ 649 (727)
T 1spu_A 572 NEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERF 649 (727)
T ss_dssp BHHHHSBCCCTTSEEE--EEEEEEECTTSCEEEEEEEEEEEESSCBCCSCSSCTTCHHHHHCGGGGCSEEEEECCTTCCC
T ss_pred chhhhhhccCCCCcEE--EeCCCCcCCCCCeeeEEEecCCCCccccccccccCCcchhhhhhcccccceEEeccCCcccC
Confidence 9999999999988887 999999999999999999993 33 568899999999999999999999999999999
Q ss_pred cCCcCccCCCCCCChhcccccCCCcccCCcEEEEEeccccCCCCCCCCCccceeeeeEEEecCCCCCCCCCCCCCCC
Q 046592 471 AGGLFVYQSKGEDTLAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIMPTVSSSFDLKPVNFFESNPILRIPPNV 547 (560)
Q Consensus 471 a~g~y~~q~~~~~gl~~~~~~~e~i~~eDiV~W~t~G~~HvPr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ld~p~~~ 547 (560)
|+|.|++|+++++||+.|+++||+|+|||||||||||+||+||+|||||||+++.||+|||+|||++||+||+||+.
T Consensus 650 a~g~y~~q~~~~~gl~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nPaldvp~~~ 726 (727)
T 1spu_A 650 PEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGALKKD 726 (727)
T ss_dssp TTCSCCTTCSSCCSHHHHHTTCCBCSSEEEEEEEEEEEEECCCGGGSSSEEEEEEEEEEEEESSSSSCTTSCCBC--
T ss_pred CCCCCccCCCCCCCHHHHhhCCCccccCCcEEEEecccccCCChhhCCCCcccEEEEEEEeCCCCCCCCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999874
No 6
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Probab=100.00 E-value=1.2e-150 Score=1264.60 Aligned_cols=519 Identities=23% Similarity=0.325 Sum_probs=444.1
Q ss_pred CCHHHHHHHHHhccCCHHHHHHHHHcCC-CCCC--EEEccccccccCCCccceeEEEEEEEeecCCCCcccccCCCeEEE
Q 046592 1 MTIEDMTSSTWAPLADEEFNRTILERGV-DLKD--LACLPISLGWYGEKEENRRLIKVQCYSMKDTANFYMRPIEGLTIL 77 (560)
Q Consensus 1 ~~~~e~~~~~~~~~~~p~~~~~~~~~gl-~~~~--v~~dpw~~g~~~~~~~~~Rl~~~~~~~~~~~~n~ya~Pl~gl~~~ 77 (560)
++.+|+.++|++|+++|+++++|.++|+ ++.. +++++|..|..+.. +++|++|++||.....+|+|+||| ||+++
T Consensus 154 i~~~E~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~p~~~~-~g~R~~~~~~~r~~~~~n~Y~~Pl-g~~~~ 231 (746)
T 1tu5_A 154 VLLREYLDIDQMIFNRELPQAAGVLHHCCSYKQGGQKLLTMNSAPRGVQ-SGDRSTWFGIYYNITKGGPYLHPV-GLELL 231 (746)
T ss_dssp CCHHHHHHHHHHHHHTTGGGGHHHHHHHHCTTTTCCCEEEECCSSCSSS-TTCCEEEEEEEECCSSSCGGGSEE-EEEEE
T ss_pred CCHHHHHHHHHHHHHCHHHHHHHHHhcCCCcccCCEEEeCccccCCcCC-CCcEEEEEEEEEecCCCCccccce-eeEEE
Confidence 5789999999999999999999999887 3333 88999976654432 579999999986643489999999 79999
Q ss_pred EeCC-----CCeEEEEecCCccccCC-------------CCCC-CCCcccc--cCCCCCCCCCCCCeecCCCCCcEEEec
Q 046592 78 LDMD-----TKEVLEITDKGKNIPIP-------------KAVN-TDYRYSA--QGLHQRMKLINPISLEQPEGPSFVIED 136 (560)
Q Consensus 78 vD~~-----~~~v~~~~~~~~~~~~p-------------~~~~-~~y~~~~--~~~~~~r~~lkp~~i~QPeG~sF~v~~ 136 (560)
||++ ++||++|++++..++.+ +... .+|.+.. ......|.++ ||+|+||||+||+| +
T Consensus 232 vD~~~~D~~~~~V~~i~y~g~~~~s~~el~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~r~~~-p~~i~QPeG~sF~v-~ 309 (746)
T 1tu5_A 232 VDHKALDPADWTVQKVFFQGRYYENLAQLEEQFEAGQVNVVVIPDDGTGGFWSLKSQVPPGPT-PPLQFHPQGPRFSV-Q 309 (746)
T ss_dssp EECCSSSGGGCEEEEEEETTEEESSHHHHHHHHHTTCCCCCCCCC-----------------------------CEEE-E
T ss_pred EeCCCCCcccCEEEEEEECCCccCchhhhhcccccCCcccccCccccCcccccccccccCCCC-CcceeCCCCCCEEe-c
Confidence 9997 69999999886321111 0011 1244332 2211115665 99999999999999 9
Q ss_pred CCEEeeeceEEEEeeCCCCccEEEeeEEECCCCCcceeEEEeeeeeeEEeecCCCCCccccceeeecCCCCCCcCCCCCC
Q 046592 137 EHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLD 216 (560)
Q Consensus 137 g~~V~W~~W~f~v~f~~reGlvL~dV~y~d~~~g~~r~Ilyrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~ 216 (560)
|+.|+||||+||||||+||||+||||+|++ ||||||+|||||+||||||.+.+.+|+|||++ ||+|.+||+|+
T Consensus 310 g~~V~W~~W~f~vgf~~reGlvL~dv~y~g------r~V~YrlSl~Em~VPYgdp~p~~~~~~~~D~~-yG~G~~a~~L~ 382 (746)
T 1tu5_A 310 GNRVASSLWTFSFGLGAFSGPRVFDVRFQG------ERLAYEISLQEAGAVYGGNTPAAMLTRYMDSG-FGMGYFATPLI 382 (746)
T ss_dssp TTEEEESSEEEEEEEETTTEEEEEEEEETT------EEEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-TCTTTTBCCCC
T ss_pred CCcccCCCcEEEEecCCCCceEEEeeEECC------eeEEEEEEeeeEEeecCCCCchhhcceeeccc-cCcccccccCc
Confidence 999999999999999999999999999975 99999999999999999999999999999986 99999999999
Q ss_pred CCCCCCCCcEEeeeeeecCCCceeEeeceEEEeeecCCCceeecccCCCCCceeeeeeeceEEEEEEeEeecCcceeEEE
Q 046592 217 PLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLVVRMAASVANYDYIVDW 296 (560)
Q Consensus 217 ~G~DCpg~~~YlD~~~~~~~G~p~~~~naiCi~E~d~G~~lwkH~~~~~~~~~~~~v~r~r~LVvr~i~TVgNYDY~f~~ 296 (560)
+||||||+|+|||+++++++|+|++++|||||||+|+|.|||||++.+.. ..++++|+|+||||+|+|||||||||+|
T Consensus 383 ~GcDCpg~i~Y~D~~~~~~~G~p~~~~naiCihE~d~G~~lwkH~~~~~~--~~~~v~r~r~LVvr~i~TVgNYdYi~~w 460 (746)
T 1tu5_A 383 RGVDCPYLATYMDWHFVVESQTPKTLHDAFCVFEQNKGLPLRRHHSDFLS--HYFGGVAQTVLVFRSVSTMLNADYVWDM 460 (746)
T ss_dssp BTTTBCTTSEEEEEEEEESSSSCEEEEEEEEEEEEEEEEEEEECCCSTTC--CCCCEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred cCCCCCCCCEEEeeEEecCCCCEEEcCCeEEEEEeeCCeeeeeecccccC--CceeeecccEEEEEEEEeecccceEEEE
Confidence 99999999999999999999999999999999999999669999995432 3568999999999999999999999999
Q ss_pred EEccCCcEEEEEEEeEEEeeccccccccccccccccCcccceeccCcccccceeEEeeeeecccCCCCCceEEEEEEEec
Q 046592 297 EFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVNIKRQE 376 (560)
Q Consensus 297 ~F~~DGsIe~ev~aTGil~t~~~~~~~~~~~~~~~~~~yG~~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~ 376 (560)
+|||||+||++|||||||++.. | .++ +.+|||+|+|+++|++|||+|+|||||||||++|||+++++++++
T Consensus 461 ~F~qdG~Ie~ev~aTGil~t~~--~------~~~-~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~ 531 (746)
T 1tu5_A 461 VFYPNGAIEVKLHATGYISSAF--L------FGA-ARRYGNQVGEHTLGPVHTHSAHYKVDLDVGGLENWVWAEDMAFVP 531 (746)
T ss_dssp EECTTSCEEEEEEEEECCCCEE--C------CTT-GGGGEEEEETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEE
T ss_pred EEecCCcEEEEEEecceEeeee--c------CCC-CCCCcceecCCccccccceEEEEEecccccCCCCEEEEEeeEEcc
Confidence 9999999999999999999654 2 122 468999999999999999999999999999999999999999988
Q ss_pred CCCCCCCccee-----eEEEEEEecChhhHhhhcCCCCCcEEEEecCCCCCCCCCceeEEEeeCCCcccCCCCCCccccc
Q 046592 377 TSPGESPRRSY-----LKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKTRVGNPVGYKVVPGGTAASLLDREDPPQKR 451 (560)
Q Consensus 377 ~~~~~~p~~~~-----~~~~~~~~~tE~ea~~~~~~~~~r~~~ivN~~~~N~~G~p~gYki~p~~~~~~l~~~~s~~~~r 451 (560)
.+ ||++++ |+++++++++|+||++++++.++|+| |+|++++|++|+|+||||+|++++.++++++|...+|
T Consensus 532 ~~---np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~r~~-ivn~~~~N~~G~p~gYkl~p~~~~~~l~~~~s~~~~r 607 (746)
T 1tu5_A 532 TA---IPWSPEHQIQRLQVTRKQLETEEQAAFPLGGASPRYL-YLASKQSNKWGHPRGYRIQTVSFAGGPMPQNSPMERA 607 (746)
T ss_dssp EE---ETTEEEEEEEEEEEEEEECCBGGGGEEETTSCCCSEE-EEEEEEECTTSCEEEEEEEEECBCCCCCCTTSTTGGG
T ss_pred cC---CCCCcccccceeEEEEEEeeehhhhccccCCCCceEE-EeCCCCcCCCCCcceEEECcCCcccccCCCcchhhcc
Confidence 65 888888 89999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccccccceEEeecCCCccccCCcCccCCCCCCC--hhcccccCCCcccCCcEEEEEeccccCCCCCCCCCc--cceeeee
Q 046592 452 GAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDT--LAVWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIM--PTVSSSF 527 (560)
Q Consensus 452 a~fa~~~lwVT~y~~~E~~a~g~y~~q~~~~~g--l~~~~~~~e~i~~eDiV~W~t~G~~HvPr~ED~Pvm--p~~~~~f 527 (560)
|+||+||||||||+|+|+||+|.|++|+.++++ |..|+ +||+|+|||||||||||+||+||+|||||| |++++||
T Consensus 608 a~fa~~~lwVT~y~d~E~~aag~ynq~~~~~~~~~~~~~~-~~e~I~n~DiV~W~t~G~~HiPr~ED~PvM~tp~~~~gf 686 (746)
T 1tu5_A 608 FSWGRYQLAITQRKETEPSSSSVFNQNDPWTPTVDFSDFI-NNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGF 686 (746)
T ss_dssp GGGGGEEEEEEECCTTCCCSSCTTTTTCTTSCSCCGGGGC-SCCBCSSEEEEEEEEEEEEECCCGGGSSCBCCCSCCEEE
T ss_pred ccccccceEEeccCCCcccCCccccccCCCCCCccHhhhc-CCCCccCCceEEEEecccccCCChhccCccCCCccEEEE
Confidence 999999999999999999999999666665544 67999 999999999999999999999999999999 7899999
Q ss_pred EEEecCCCCCCCCCCCCCC
Q 046592 528 DLKPVNFFESNPILRIPPN 546 (560)
Q Consensus 528 ~L~P~nFFd~nP~ld~p~~ 546 (560)
+|||+|||++||+||+|++
T Consensus 687 ~LrP~nFF~~nP~ld~p~~ 705 (746)
T 1tu5_A 687 FLRPYNFFDQEPSMDSADS 705 (746)
T ss_dssp EEEEESSSSSSCCCC----
T ss_pred EEEeCCCCCCCCcccCCCc
Confidence 9999999999999999998
No 7
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*
Probab=100.00 E-value=1.1e-149 Score=1255.30 Aligned_cols=508 Identities=20% Similarity=0.310 Sum_probs=455.2
Q ss_pred CCHHHHHHHHHhccCCHHHHHHH------HHcC-CCCCCEEEcccccccc--CCCccceeEEEEEEEeecCCCCcccccC
Q 046592 1 MTIEDMTSSTWAPLADEEFNRTI------LERG-VDLKDLACLPISLGWY--GEKEENRRLIKVQCYSMKDTANFYMRPI 71 (560)
Q Consensus 1 ~~~~e~~~~~~~~~~~p~~~~~~------~~~g-l~~~~v~~dpw~~g~~--~~~~~~~Rl~~~~~~~~~~~~n~ya~Pl 71 (560)
++.+|+.++|++|+ +++++| +++| |+... |++|++|.. +. ++++|++|++||.....+|+|+|||
T Consensus 134 ~~~~E~~~~e~~~~---~~~~~~~~~~l~~~~g~~~~~~--l~~w~~~~~~~~~-~~g~R~~~~~~~r~~~~~n~Y~~Pl 207 (747)
T 1w7c_A 134 LDRIKSAAKSSFLN---KNLNTTIMRDVLEGLIGVPYED--MGCHSAAPQLHDP-ATGATVDYGTCNINTENDAENLVPT 207 (747)
T ss_dssp CCHHHHHHHHHHHH---HHHTSHHHHHHHHHHHSSCGGG--EEEEECSSCEECT-TTCCEEEEEEEEECCSSSCGGGCEE
T ss_pred CCHHHHHHHHHHHH---HHHHHHhhccchhhcCCcccce--eeeecccCCcCCC-CCCceEEEEEEEEecCCCCccccce
Confidence 57899999999999 777776 7788 75444 999987754 33 3579999999986643489999999
Q ss_pred CCeEEEEeCC-----CCeEEEEecCCccc-------------------cCCCCCCCCCc---ccc-cCCC-CCCCCCCCC
Q 046592 72 EGLTILLDMD-----TKEVLEITDKGKNI-------------------PIPKAVNTDYR---YSA-QGLH-QRMKLINPI 122 (560)
Q Consensus 72 ~gl~~~vD~~-----~~~v~~~~~~~~~~-------------------~~p~~~~~~y~---~~~-~~~~-~~r~~lkp~ 122 (560)
||+++||++ ++||++|++++..+ ++| ..+|. +.. ..++ ..|+++|||
T Consensus 208 -g~~~~vD~~~~D~~~~~V~~v~~~g~~~~s~~el~~~~~~~g~v~~~~~p---~~~~~~~~~~~~~~g~~~~r~~lkp~ 283 (747)
T 1w7c_A 208 -GFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKID---VDNLDWTVIQRNDSAPVRHLDDRKSP 283 (747)
T ss_dssp -EEEEEEECCSSCGGGCEEEEEEETTEEESSHHHHHHHHHSTTCCCCCCCC---TTCCGGGCCSCCTTSCCCTTTTSCCC
T ss_pred -eeEEEEeCCCCCcccCEEEEEEECCcccCchhhhhhhhcccCcccccccC---CCCCcccchhhcccCCCCcccCCCCC
Confidence 799999997 57999998886211 222 23332 222 2221 239999999
Q ss_pred eecCCCCCcEEEecCCE--EeeeceEEEEeeCCCCccEEEeeEEECCCCCcceeEEEeeeeeeEEeecCCCCCcccccee
Q 046592 123 SLEQPEGPSFVIEDEHL--VKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPTDAWYFKTY 200 (560)
Q Consensus 123 ~i~QPeG~sF~v~~g~~--V~W~~W~f~v~f~~reGlvL~dV~y~d~~~g~~r~Ilyrlsl~Em~vpY~dp~~~~~~k~~ 200 (560)
+|+||||+||+| +|+. |+||||+||||||+||||+||||+|++ ||||||+|||||+||||||.+.|++|+|
T Consensus 284 ~i~QPeG~sF~v-~g~~~yV~W~~W~f~vgf~~reGlvL~dv~y~g------r~V~YrlSl~Em~VPYgdp~p~~~~~~~ 356 (747)
T 1w7c_A 284 RLVEPEGRRWAY-DGDEEYFSWMDWGFYTSWSRDTGISFYDITFKG------ERIVYELSLQELIAEYGSDDPFNQHTFY 356 (747)
T ss_dssp CCCCTTCCCCEE-ETTTTEEEETTEEEEEEEETTTEEEEEEEEETT------EEEEEEEEEEEEEEEECCSSTTGGGCEE
T ss_pred cccCCCCCCEEE-eCCccceeccCCeEEEecCCCCceEEEeeeECC------EEEEEEEEeeeEEeccCCCCchhheeee
Confidence 999999999999 9999 999999999999999999999999975 9999999999999999999999999999
Q ss_pred eecCCCCCCcCCCCCCCCCCCCCCcEEeeeeeecCCCceeEeeceEEEeeecCCCceeecccCCCCCceeeeeeeceEEE
Q 046592 201 MDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESYAGDIGWRHAESPITGMGIKEVRPKVTLV 280 (560)
Q Consensus 201 fD~geyG~G~~a~~L~~G~DCpg~~~YlD~~~~~~~G~p~~~~naiCi~E~d~G~~lwkH~~~~~~~~~~~~v~r~r~LV 280 (560)
||+| ||+|. ||+|++||||||+|+|||++++ ++|+|++++|||||||+|+|.|||||+++ +.++++|+|+||
T Consensus 357 ~D~g-yG~G~-a~~L~~GcDCpg~i~Y~D~~~~-~~G~p~~~~naiCihE~d~G~pl~kH~~~-----~~~~v~r~r~LV 428 (747)
T 1w7c_A 357 SDIS-YGVGN-RFSLVPGYDCPSTAGYFTTDTF-EYDEFYNRTLSYCVFENQEDYSLLRHTGA-----SYSAITQNPTLN 428 (747)
T ss_dssp EHHH-HCSSS-SCCCCBTTTBCTTCEEEEEEEE-ETTEEEEEEEEEEEEEEECSSCSEEEEET-----TEEEEECCEEEE
T ss_pred eccc-cCccc-ccccccCCCCCCCCEEeeeEEe-cCCCeEEcCceEEEEEEeCCeeeEEeccC-----CcceeeeCceEE
Confidence 9999 99999 9999999999999999999999 99999999999999999999779999998 367899999999
Q ss_pred EEEeEeecCcceeEEEEEccCCcEEEEEEEeEEEeeccccccccccccccccCcccceeccCcccccceeEEeeeeeccc
Q 046592 281 VRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVIGVIHDHFITFYLDMDI 360 (560)
Q Consensus 281 vr~i~TVgNYDY~f~~~F~~DGsIe~ev~aTGil~t~~~~~~~~~~~~~~~~~~yG~~V~~~~~g~~HqH~f~~RlD~dI 360 (560)
||+|+|||||||||+|+|||||+||++|||||||++.. +. ++++.+|||+|+|+++|++|||+|+|||||||
T Consensus 429 vr~i~TVgNYdYif~w~F~qdG~Ie~ev~aTGil~t~~--~~------~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dI 500 (747)
T 1w7c_A 429 VRFISTIGNADYNFLYKFFLDGTLEVSVRAAGYIQAGY--WN------PETSAPYGLKIHDVLSGSFHDHVLNYKVDLDV 500 (747)
T ss_dssp EEEEECCCC-CEEEEEEECTTSCEEEEEEECBCCCCEE--CC------TTTCGGGCCEEETTEECCCEEEEEEEEEEECT
T ss_pred EEEEEeccccceEEEEEEecCCeEEEEEEeeEEEeccc--cC------CCCcCCCcceecCCcccCccceEEEEEecccc
Confidence 99999999999999999999999999999999999654 21 22146899999999999999999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCCCCcce-----eeEEEEEEecChhhHhhhcC-CCCCcEEEEecCCCCCCCCCceeEEEee
Q 046592 361 DGSDNSFVKVNIKRQETSPGESPRRS-----YLKADRNVAKTEKDAQIKLK-LYDPAEFHVINPTKKTRVGNPVGYKVVP 434 (560)
Q Consensus 361 dG~~Nsv~~~~~~~~~~~~~~~p~~~-----~~~~~~~~~~tE~ea~~~~~-~~~~r~~~ivN~~~~N~~G~p~gYki~p 434 (560)
||++|||+++++++++.+ ||+++ +|+++++++++|++|+++++ ..++|+| |+|++++|++|+|+||||+|
T Consensus 501 dG~~Nsv~~~d~~~~~~~---np~~~~~~~~~~~~~~t~~~tE~~a~~~~~~~~~~r~~-ivN~~~~N~~G~p~gYkl~p 576 (747)
T 1w7c_A 501 GGTKNRASQYVMKDVDVE---YPWAPGTVYNTKQIAREVFENEDFNGINWPENGQGILL-IESAEETNSFGNPRAYNIMP 576 (747)
T ss_dssp TSSEEEEEEEEEEEEEEE---CTTSTTCEEEEEEEEEEECCBCCTTCBCCCGGGCEEEE-EEEEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEEeeEEcccC---CCCCcccccceeEEEEEEccchhhhhhcCCCCCCceEE-EeCCCccCCCCCcceEEEec
Confidence 999999999999998865 67777 89999999999999999999 5779999 99999999999999999999
Q ss_pred CCC-cccCCCCCCcccccccccccceEEeecCCCccccCCcCccCCCCCCC--hhcccccCCCcccCCcEEEEEeccccC
Q 046592 435 GGT-AASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDT--LAVWSDRDRSIENKDIVLWYTLGFHHI 511 (560)
Q Consensus 435 ~~~-~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~a~g~y~~q~~~~~g--l~~~~~~~e~i~~eDiV~W~t~G~~Hv 511 (560)
+++ ++++++++|...+||+||+||||||||+|+|+||+|.|++|+.++++ |+.|+ +||+|+|||||||||||+||+
T Consensus 577 ~~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~d~E~~aag~ynq~~~~~~~~~~~~~~-~~e~I~n~DiVlW~t~G~~Hi 655 (747)
T 1w7c_A 577 GGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDTELRSSTALNTNALYDPPVNFNAFL-DDESLDGEDIVAWVNLGLHHL 655 (747)
T ss_dssp CTTCCCCSCSSCTTCSSSCGGGGSSEEEEECCTTCCCSCCTTCTTCSSSCSCCGGGGC-SCCBCTTEEEEEEEEEEEEEC
T ss_pred CCCCcccccCCCchhhhcchhccCcEEEecCCCCccCCCCCccccCCCCCCcchhhhh-CCCccccCceEEEEecccccC
Confidence 998 99999999999999999999999999999999999999666665544 78999 999999999999999999999
Q ss_pred CCCCCCCCc--cceeeeeEEEecCCCCCCCCCCCCCC
Q 046592 512 PCQEDFPIM--PTVSSSFDLKPVNFFESNPILRIPPN 546 (560)
Q Consensus 512 Pr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ld~p~~ 546 (560)
||+|||||| |++++||+|||+|||++||+||+|++
T Consensus 656 Pr~ED~PvM~tP~~~~gf~LrP~nFF~~nP~ldvp~~ 692 (747)
T 1w7c_A 656 PNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQ 692 (747)
T ss_dssp CCGGGSSCBCSSSSEEEEEEEEESSSSSCTTTTCSSE
T ss_pred CChhhcCCcCCCcceEEEEEEeCCcCCCCCCccCCCc
Confidence 999999999 77999999999999999999999987
No 8
>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A*
Probab=100.00 E-value=5.5e-144 Score=1205.52 Aligned_cols=477 Identities=25% Similarity=0.394 Sum_probs=424.9
Q ss_pred cceeEEEEEEEeecCCCCcccccCCCeEEEEeCCCC-----eEEEEecCCcccc------------------CCC--CCC
Q 046592 48 ENRRLIKVQCYSMKDTANFYMRPIEGLTILLDMDTK-----EVLEITDKGKNIP------------------IPK--AVN 102 (560)
Q Consensus 48 ~~~Rl~~~~~~~~~~~~n~ya~Pl~gl~~~vD~~~~-----~v~~~~~~~~~~~------------------~p~--~~~ 102 (560)
.++|.. |+.+.|... ..|.||+ ||+++||+++. +|.+|.+++..+. ++. .++
T Consensus 174 sg~r~~-W~~~~~~~~-g~~l~P~-gl~~~vDh~~~Dps~W~v~~v~Yng~~y~s~eel~~~y~~g~~~~~~~~~~~~~g 250 (731)
T 3hi7_A 174 SGQRRS-WLIIQRYVE-GYFLHPT-GLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVDVVVLEDPLPGG 250 (731)
T ss_dssp TTCCEE-EEEEEECST-TGGGCEE-EEEEEEECCSSSGGGCEEEEEEETTEECSSHHHHHHHHHTTCCCCCCCCCCC---
T ss_pred CCCEEE-ehheeccCC-Cceeecc-ceEEEEecCCCChHHcEEEEEEECCEecCCHHHHHHHHhCCCeeEeccCCCCCcc
Confidence 344443 666666553 5799999 89999999987 8999998875321 111 111
Q ss_pred ---------CCCcc-cccCCCCCCCCCCCCeecCCCCCcEEEecCCEEeeeceEEEEeeCCCCccEEEeeEEECCCCCcc
Q 046592 103 ---------TDYRY-SAQGLHQRMKLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEI 172 (560)
Q Consensus 103 ---------~~y~~-~~~~~~~~r~~lkp~~i~QPeG~sF~v~~g~~V~W~~W~f~v~f~~reGlvL~dV~y~d~~~g~~ 172 (560)
..|.. ...+...+++++|||+|+||||+||+| +|++|+||||+||||||+||||+||||+|+|
T Consensus 251 ~~~~~~~~~~~~s~~~~~~~~~~~~~~kp~~i~QPeG~sF~V-~g~~V~W~~W~F~vgfn~reGlvL~dV~y~g------ 323 (731)
T 3hi7_A 251 KGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRL-EGNAVLYGGWSFAFRLRSSSGLQVLNVHFGG------ 323 (731)
T ss_dssp -------CCCCTTSCCCCSCCSBCCCSCCCEEECTTCCSSEE-ETTEEEEBTEEEEEEEETTTEEEEEEEEETT------
T ss_pred cccccccccccccccccCCCCCCCCCCCCcceeCCCCCCEEE-eCCEEEecCcEEEEecCCCCCcEEEeEEECC------
Confidence 01221 122222348899999999999999999 9999999999999999999999999999986
Q ss_pred eeEEEeeeeeeEEeecCCCCCccccceeeecCCCCCCcCCCCCCCCCCCCCCcEEeeeeeecCCCceeEeeceEEEeeec
Q 046592 173 RNVMYKGFTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESY 252 (560)
Q Consensus 173 r~Ilyrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~~G~DCpg~~~YlD~~~~~~~G~p~~~~naiCi~E~d 252 (560)
|||+||+|||||+||||||+++|++|+|||+| ||+|.+||+|++||||||+|+|||+++.+++|+|++++|||||||+|
T Consensus 324 r~v~YrlSlsEm~VpYgdp~p~~~~k~~fD~G-yG~G~~an~L~lGcDCpg~i~YlD~~~~~~~G~p~~~~naICihE~d 402 (731)
T 3hi7_A 324 ERIAYEVSVQEAVALYGGHTPAGMQTKYLDVG-WGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPRALCLFEMP 402 (731)
T ss_dssp EEEEEEEEEEEEEEEECCSSHHHHHCEEEGGG-GTGGGCCCCCCBTTTBCTTSEEEEEEEEESCSSCEEEEEEEEEEEEE
T ss_pred eeEEEEeeeeeeEEccCCCCCccccceeeecC-cCccccccccccCCCCCCCCEEEeeEEecCCCCEEecCCEEEEEEee
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccc--CCCCCceeeeeeeceEEEEEEeEeecCcceeEEEEEccCCcEEEEEEEeEEEeecccccccccccccc
Q 046592 253 AGDIGWRHAE--SPITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQ 330 (560)
Q Consensus 253 ~G~~lwkH~~--~~~~~~~~~~v~r~r~LVvr~i~TVgNYDY~f~~~F~~DGsIe~ev~aTGil~t~~~~~~~~~~~~~~ 330 (560)
+|.++|||++ +|+ +..+.+++|+|+||||+|+|||||||||+|+|||||+||+||||||||++.. | . ++
T Consensus 403 ~Gi~~~kHtd~~~r~-~~~~~~~~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~eVraTGilst~~--~-~-----~~ 473 (731)
T 3hi7_A 403 TGVPLRRHFNSNFKG-GFNFYAGLKGQVLVLRTTSTVYNADYIWDFIFYPNGVMEAKMHATGYVHATF--Y-T-----PE 473 (731)
T ss_dssp CSSCSEEEEEECSSS-SEEEEEEECCEEEEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEECCCEEE--C-C-----GG
T ss_pred CCeeEEEecccccCC-ccceeecccccEEEEEEeeecccccEEEEEEEecCCeEEEEEEEEEEEeecc--c-C-----CC
Confidence 9977999976 442 1246689999999999999999999999999999999999999999999754 2 1 12
Q ss_pred ccCcccceeccCcccccceeEEeeeeecccCCCCCceEEEEEEEecCCCCCCCcc--eeeEEEEEEecChhhHhhhcCCC
Q 046592 331 AENLFGTLLSENVIGVIHDHFITFYLDMDIDGSDNSFVKVNIKRQETSPGESPRR--SYLKADRNVAKTEKDAQIKLKLY 408 (560)
Q Consensus 331 ~~~~yG~~V~~~~~g~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~tE~ea~~~~~~~ 408 (560)
+.+||++|+|+++|++|||+|||||||||||.+|||+++++++++.+.+++|.. +++++++++++||+||+++++++
T Consensus 474 -~~~yGt~V~p~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~~~~nP~~~~~~~~~~~~~~t~l~tE~ea~~~~~~~ 552 (731)
T 3hi7_A 474 -GLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRK 552 (731)
T ss_dssp -GGGSEEEEETTEEEECEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECTTCTTSEEEEEEEEEEEECBGGGGCBCTTSC
T ss_pred -CCCCcceecCCcccccceeEEEEEeccccCCCCCEEEEEeceecCCCCCCCCCccceeEEEEEEEccchhhhhhccCCC
Confidence 368999999999999999999999999999999999999999988776777764 56899999999999999999999
Q ss_pred CCcEEEEecCCCCCCCCCceeEEEeeCCCcccCCCCCCcccccccccccceEEeecCCCccccCCcCccCCCCC--CChh
Q 046592 409 DPAEFHVINPTKKTRVGNPVGYKVVPGGTAASLLDREDPPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGE--DTLA 486 (560)
Q Consensus 409 ~~r~~~ivN~~~~N~~G~p~gYki~p~~~~~~l~~~~s~~~~ra~fa~~~lwVT~y~~~E~~a~g~y~~q~~~~--~gl~ 486 (560)
++|+|+|+|+ ++|++|+|+||||+|++.+.+++.++|...+||+||+||||||||+|+|+||+|.|++|++++ .||+
T Consensus 553 ~~R~~~i~N~-~~N~~G~pvgYkl~p~~~~~~~l~~~s~~~rra~fa~~~lwVT~y~d~E~~aag~y~~~s~~~~~~gl~ 631 (731)
T 3hi7_A 553 LPKYLLFTSP-QENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWDPPVVFE 631 (731)
T ss_dssp CCSEEEEEEE-EECTTSCEEEEEEEEECCCCCCSCTTSGGGGGGGGGGCSEEEEECCGGGSCSCCTTTTTCSSSCSCCTT
T ss_pred CceEEEEeCC-CcCCCCCceeEEEccCCccccccCCcchhhhhchhcccceEEecCCCCccCCCccccccCCCCCCCCHH
Confidence 9999999999 899999999999999987777777889999999999999999999999999999999898876 4699
Q ss_pred cccccCCCcccCCcEEEEEeccccCCCCCCCCCc--cceeeeeEEEecCCCCCCCCCCCCCC
Q 046592 487 VWSDRDRSIENKDIVLWYTLGFHHIPCQEDFPIM--PTVSSSFDLKPVNFFESNPILRIPPN 546 (560)
Q Consensus 487 ~~~~~~e~i~~eDiV~W~t~G~~HvPr~ED~Pvm--p~~~~~f~L~P~nFFd~nP~ld~p~~ 546 (560)
+|+++||+|+|||||||||||+||+||+|||||| |++++||+|||+|||++||+||++++
T Consensus 632 ~w~~~~e~I~n~DiV~W~t~G~~HiPr~ED~PvMptp~e~~~f~LrP~nFFd~nPalds~~~ 693 (731)
T 3hi7_A 632 QFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDT 693 (731)
T ss_dssp HHHHTCCBCSSEEEEEEEEEEEEECCCGGGSSCBCSTTCEEEEEEEEESSSSSCGGGGCTTC
T ss_pred HHhhCCCceecCceEEEEecccccCCChhhcCccccccceeEEEEEccCCCCCCccccCcce
Confidence 9999999999999999999999999999999999 55899999999999999999999986
No 9
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans}
Probab=100.00 E-value=1e-142 Score=1197.09 Aligned_cols=471 Identities=22% Similarity=0.400 Sum_probs=416.9
Q ss_pred eEEEEEEEeecCC---CCcccccCCCeEEEEeCCCC-----eEEEEecCCcccc----------------CCCCCCCCCc
Q 046592 51 RLIKVQCYSMKDT---ANFYMRPIEGLTILLDMDTK-----EVLEITDKGKNIP----------------IPKAVNTDYR 106 (560)
Q Consensus 51 Rl~~~~~~~~~~~---~n~ya~Pl~gl~~~vD~~~~-----~v~~~~~~~~~~~----------------~p~~~~~~y~ 106 (560)
|...|++|.|... ++.|+||+ ||+++||++++ +|.+|.+++..+. +.+.....|.
T Consensus 233 ~r~~W~~~~~~~~g~~d~~~lhP~-gl~~lvDh~~~Dps~W~v~~v~Yng~~y~s~eel~~~y~~g~~~~~~~~~~g~ws 311 (797)
T 3pgb_A 233 RIIRWDMFWNMADDEFDSETLLPL-GLYLKSDVTGRDPSQWKLLGWMYNDIFYETTEEFRKAYWSPGFVKLKPNVDGAWA 311 (797)
T ss_dssp CCEEEEEEEECCCTTCCCGGGCEE-EEEEEEECCSSCGGGCEEEEEEETTEEESSHHHHHHHHTSTTCCCCCCCCCCGGG
T ss_pred CEEEeeeeeccCCCccccceeecc-ceEEEEecCCCChhHcEEEEEEECCEecCCHHHHHHHHhCCCeeecCCCCCCccc
Confidence 3447888887532 57999999 89999999976 8999998885432 1111122333
Q ss_pred cc-ccCCCCCCCCCCCCeecCCCCCcEEEe-cCCEEeeeceEEEEeeCCCCccEEEeeEEECCCCCcceeEEEeeeeeeE
Q 046592 107 YS-AQGLHQRMKLINPISLEQPEGPSFVIE-DEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSEL 184 (560)
Q Consensus 107 ~~-~~~~~~~r~~lkp~~i~QPeG~sF~v~-~g~~V~W~~W~f~v~f~~reGlvL~dV~y~d~~~g~~r~Ilyrlsl~Em 184 (560)
.. ..+...+|+++|||+|+||||+||+|+ +|++|+||||+||||||+||||+||||+|+| ||||||+|||||
T Consensus 312 ~~~~~g~~~~~~~lkP~~i~QPeGpsF~V~g~g~~V~W~~W~F~vgfn~ReGlvL~dV~y~g------r~V~YrlSlsEm 385 (797)
T 3pgb_A 312 HTEQRGPVPPQDRKQPPVMIAPDGARYSVDAERKYVTWMDFSFYIAFNRDTGLSLFDIKYKG------QRVLYELGLQEA 385 (797)
T ss_dssp CCSCCSCCCTTTTSCCCCCCCTTCCCSEEETTTTEEEETTEEEEEEEETTTEEEEEEEEETT------EEEEEEEEEEEE
T ss_pred ccccCCCCCCcCCCCCceeeCCCCCCEEEecCCCEEEeCCcEEEEecCCCCceEEEccccCC------eeEEEEeEeeee
Confidence 21 222233488999999999999999993 3899999999999999999999999999976 999999999999
Q ss_pred EeecCCCCCccccceeeecCCCCCCcCCCCCCCCCCCCCCcEEeeeeeecCCCceeEeeceEEEeeecCCCceeecccCC
Q 046592 185 FVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAHYMDGVFPAADGTPYVRSNMICIFESYAGDIGWRHAESP 264 (560)
Q Consensus 185 ~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~~G~DCpg~~~YlD~~~~~~~G~p~~~~naiCi~E~d~G~~lwkH~~~~ 264 (560)
+||||||.|.+.+++|+|. |||+|.+||+|+|||||||+|+|||+++.++ |+|++++|||||||+|+|.|||||++.
T Consensus 386 ~VPYg~~~P~~~~~af~D~-eyG~G~~an~L~lGcDCpg~i~YlD~~~~~~-~~p~~~~NaICihE~D~G~~lwKHt~~- 462 (797)
T 3pgb_A 386 LAHYAANDPVQSSVAYLDS-YYGFGPYAFELLKGYDCPSYASYLNTSFYKD-EETHTHVDSLCLFEFDADYPMARHSTS- 462 (797)
T ss_dssp EEEECCSSHHHHHCEEEGG-GTCSGGGCCCCCBTTTBCTTCEEEEEEEEET-TEEEEEEEEEEEEEEECSSCSEEEECS-
T ss_pred EEeCCCCChhhhcceeeec-ccCCccccccCccCCCCCCCCEEeeeEEecC-CCceEeccEEEEEEeeCCceeEEeccC-
Confidence 9999999876665556665 9999999999999999999999999999987 679999999999999999779999986
Q ss_pred CCCceeeeeeeceEEEEEEeEeecCcceeEEEEEccCCcEEEEEEEeEEEeeccccccccccccccccCcccceeccCcc
Q 046592 265 ITGMGIKEVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTAYENMNQISNQAENLFGTLLSENVI 344 (560)
Q Consensus 265 ~~~~~~~~v~r~r~LVvr~i~TVgNYDY~f~~~F~~DGsIe~ev~aTGil~t~~~~~~~~~~~~~~~~~~yG~~V~~~~~ 344 (560)
..++++|+|+||||+|+|||||||||+|+|||||+||+||||||||++.. + . + +.+|||+|+|+++
T Consensus 463 ----~~~~v~r~r~LVvr~I~TVgNYDYif~w~F~qdGsIe~eVraTGiLst~~--~------~-~-~~~yGt~V~p~v~ 528 (797)
T 3pgb_A 463 ----EFVSVTKNVYFTLRSVSTIGNADYMFSYNFHMDGTIGVEVRASGYIQSAY--Y------A-N-NQDFGYQIHDSLS 528 (797)
T ss_dssp ----SEEEEECCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEEEECCCCEE--C------T-T-CGGGCCEEETTEE
T ss_pred ----CcceEEeccEEEEEEEeeeccccEEEEEEEecCCeEEEEEEEEEEEEecc--c------C-C-CCCccceecCCcc
Confidence 46789999999999999999999999999999999999999999999642 2 1 1 3689999999999
Q ss_pred cccceeEEeeeeecccCCCCCceEEEEEEEecCCCCCC--CcceeeEEEEEEecChhhHhhhcCCCCCcEEEEecCCCCC
Q 046592 345 GVIHDHFITFYLDMDIDGSDNSFVKVNIKRQETSPGES--PRRSYLKADRNVAKTEKDAQIKLKLYDPAEFHVINPTKKT 422 (560)
Q Consensus 345 g~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~~--p~~~~~~~~~~~~~tE~ea~~~~~~~~~r~~~ivN~~~~N 422 (560)
|++|||+|||||||||||.+|||+++++++++.+.+++ +++++|+++++++++|+||+++++++++|+|+|+|++++|
T Consensus 529 a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~~~~~p~~p~~~~n~~~~~~t~l~tE~eA~~~~~~~~~r~~~ivN~~~~N 608 (797)
T 3pgb_A 529 GSMHDHVLNFKADFDILGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIHSEDEARLNWGFNGQTQLHVVNQDKPN 608 (797)
T ss_dssp CCCEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECTTTTTCEEEEEEEEEEECCBGGGCEECCCGGGCEEEEEEEEEEEC
T ss_pred ccccceEEEEeeccCCCCCCCeEEEEeeEEccCCCCCCCCcccceeEEEEEEccchhhhhhhcCCCCCceEEEeCCCCcC
Confidence 99999999999999999999999999999988765555 4689999999999999999999999999999999999999
Q ss_pred CCCCceeEEEeeCCCcccCCCCCC-cccccccccccceEEeecCCCccccCCcCccCCCCCCC--hhcccccCCCcccCC
Q 046592 423 RVGNPVGYKVVPGGTAASLLDRED-PPQKRGAFTNNQIWVTPYNESEQWAGGLFVYQSKGEDT--LAVWSDRDRSIENKD 499 (560)
Q Consensus 423 ~~G~p~gYki~p~~~~~~l~~~~s-~~~~ra~fa~~~lwVT~y~~~E~~a~g~y~~q~~~~~g--l~~~~~~~e~i~~eD 499 (560)
++|+|+||||+|++++.+|+.++| ...+||+||+||||||||+|+|+||+|.|++|++++++ +..|+ +||+|+|||
T Consensus 609 ~~G~pvgYkL~p~~~~~~L~~~~s~~~~rra~fa~~~lwVT~y~d~E~~aaG~y~~qs~~~~~v~~~~~~-~nesI~neD 687 (797)
T 3pgb_A 609 KFGEPRGYRILPSAGTAHLTVLNSSNLVHAAHWAEYDVQVTRQHDFEPTSAHPYNSQDIHNPPVDFSTFF-NGESLNQTD 687 (797)
T ss_dssp TTSCEEEEEEECSSCCCCCCCSSCTTTTTTTGGGGCSEEEEECCTTCCCSCCTTGGGCTTSCSCCGGGGC-SCCBCSSEE
T ss_pred CCCCeeeEEEccCCCCccccCCCchhhhhhchhhhCceEEecCCCCccCCCCCCcccCCCCCccchhhhc-CCCccccCc
Confidence 999999999999987777765555 57888999999999999999999999999999997654 35666 999999999
Q ss_pred cEEEEEeccccCCCCCCCCC--ccceeeeeEEEecCCCCCCCCCCCCCC
Q 046592 500 IVLWYTLGFHHIPCQEDFPI--MPTVSSSFDLKPVNFFESNPILRIPPN 546 (560)
Q Consensus 500 iV~W~t~G~~HvPr~ED~Pv--mp~~~~~f~L~P~nFFd~nP~ld~p~~ 546 (560)
||||||||+||+||+||||| ||++++||+|||+|||++||+||++.+
T Consensus 688 iVlW~t~G~~HiPr~ED~Pvt~MP~e~~gf~LrP~nFFd~NPald~~~~ 736 (797)
T 3pgb_A 688 LVVWLNLGMHHVPHTGDLPNTVFTTAHSGVAFTPLNYLPGDPSRETVNM 736 (797)
T ss_dssp EEEEEEEEEEECCCGGGSSCBCTTTSEEEEEEEEESCSSSCGGGGCSCE
T ss_pred eEEEEecccccCCChhhCCCccCCcceeEEEEEcCCCCCCCccccCccc
Confidence 99999999999999999999 999999999999999999999999975
No 10
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=14.47 E-value=3.1e+02 Score=24.66 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=45.8
Q ss_pred CCCCCCeecCCCCCcEEEecCCEEeeeceEEEEeeCCCCccEEEeeEEECCCCCcceeEEEeeeeeeEEeecCCCCCcc
Q 046592 117 KLINPISLEQPEGPSFVIEDEHLVKWANWEFHLKPDPRAGAIVSQARVRDPDSGEIRNVMYKGFTSELFVPYMDPTDAW 195 (560)
Q Consensus 117 ~~lkp~~i~QPeG~sF~v~~g~~V~W~~W~f~v~f~~reGlvL~dV~y~d~~~g~~r~Ilyrlsl~Em~vpY~dp~~~~ 195 (560)
+++|-...+=+||..|+| +-+|+|..+.-.||...++.++. +.+| -...+|+--|+.-..++
T Consensus 32 ~~~k~~~f~iKEG~~Y~i---------ki~F~V~~eivsGLkY~q~v~r~-----Gi~V---dk~~~mlGsy~P~~e~y 93 (141)
T 1kmt_A 32 ESFKKQSFVLKEGVEYRI---------KISFRVNREIVSGMKYIQHTYRK-----GVKI---DKTDYMVGSYGPRAAAY 93 (141)
T ss_dssp GGGGGCCEEEETTCEEEE---------EEEEEECSSCEEEEEEEEEEEET-----TEEE---EEEEEEEEEECCCSSCE
T ss_pred hhhccCceEccCCcEEEE---------EEEEEEccccccCcEEEEEEEEC-----CEEE---CcceEeeeccCCCCCcc
Confidence 345556667778888877 57899999999999988888874 3665 45679999999444443
Done!