BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046596
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/258 (84%), Positives = 239/258 (92%)
Query: 1 MGIVEEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD 60
MG+VEEAHNVKV GSGE IVL HGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD
Sbjct: 19 MGVVEEAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD 78
Query: 61 YFDFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISG 120
YFDF+RYS LEGY+ DL+AILE+L+I+SCI VGHSVSAMIG +AS++RPDLF+K+VMIS
Sbjct: 79 YFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA 138
Query: 121 SPRYLNDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 180
SPRY+NDVDY GGFEQE+L+QLFEA+RSNYKAWC GFAPLAVGGDMDS+AVQEFSRTLFN
Sbjct: 139 SPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFN 198
Query: 181 MRPDIALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEV 240
MRPDIALSV QTIFQSDMRQIL V+VPCHI+QSVKDLAVPVV+SEYLH NL +SVVEV
Sbjct: 199 MRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEV 258
Query: 241 MSSDGHLPQLSSPDIVIP 258
+ SDGHLPQLSSPD VIP
Sbjct: 259 IPSDGHLPQLSSPDSVIP 276
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 460 bits (1183), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/258 (84%), Positives = 239/258 (92%)
Query: 1 MGIVEEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD 60
MG+VEEAHNVKV GSGE IVL HGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD
Sbjct: 3 MGVVEEAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD 62
Query: 61 YFDFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISG 120
YFDF+RYS LEGY+ DL+AILE+L+I+SCI VGHSVSAMIG +AS++RPDLF+K+VMIS
Sbjct: 63 YFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA 122
Query: 121 SPRYLNDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 180
SPRY+NDVDY GGFEQE+L+QLFEA+RSNYKAWC GFAPLAVGGDMDS+AVQEFSRTLFN
Sbjct: 123 SPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFN 182
Query: 181 MRPDIALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEV 240
MRPDIALSV QTIFQSDMRQIL V+VPCHI+QSVKDLAVPVV+SEYLH NL +SVVEV
Sbjct: 183 MRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEV 242
Query: 241 MSSDGHLPQLSSPDIVIP 258
+ SDGHLPQLSSPD VIP
Sbjct: 243 IPSDGHLPQLSSPDSVIP 260
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 459 bits (1182), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/258 (84%), Positives = 239/258 (92%)
Query: 1 MGIVEEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD 60
MG+VEEAHNVKV GSGE IVL HGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD
Sbjct: 1 MGVVEEAHNVKVIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPD 60
Query: 61 YFDFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISG 120
YFDF+RYS LEGY+ DL+AILE+L+I+SCI VGHSVSAMIG +AS++RPDLF+K+VMIS
Sbjct: 61 YFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA 120
Query: 121 SPRYLNDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFN 180
SPRY+NDVDY GGFEQE+L+QLFEA+RSNYKAWC GFAPLAVGGDMDS+AVQEFSRTLFN
Sbjct: 121 SPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCLGFAPLAVGGDMDSIAVQEFSRTLFN 180
Query: 181 MRPDIALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEV 240
MRPDIALSV QTIFQSDMRQIL V+VPCHI+QSVKDLAVPVV+SEYLH NL +SVVEV
Sbjct: 181 MRPDIALSVGQTIFQSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEV 240
Query: 241 MSSDGHLPQLSSPDIVIP 258
+ SDGHLPQLSSPD VIP
Sbjct: 241 IPSDGHLPQLSSPDSVIP 258
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 321 bits (822), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 149/251 (59%), Positives = 196/251 (78%), Gaps = 1/251 (0%)
Query: 6 EAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFN 65
+A NV+V GSGE+V+VLAHGFGTDQS W ++P + DYRVVLYD + AG+ NPD+FDF
Sbjct: 9 DALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFR 68
Query: 66 RYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYL 125
RY+TL+ Y DLL IL+ L ID C VGHSVSAMIG +ASI RP+LF+KL++I SPR+L
Sbjct: 69 RYTTLDPYVDDLLHILDALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFL 128
Query: 126 NDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDI 185
ND DY+GGFEQ E++++F AM +NY+AW +GFAPLAVG D+ + AV+EFSRTLFNMRPDI
Sbjct: 129 NDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPA-AVREFSRTLFNMRPDI 187
Query: 186 ALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDG 245
L V++T+F SDMR +LGLV VPCHI Q+ +D +VP ++ YL +L + V ++ +G
Sbjct: 188 TLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIEG 247
Query: 246 HLPQLSSPDIV 256
HLP LS+P ++
Sbjct: 248 HLPHLSAPTLL 258
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 321 bits (822), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 145/248 (58%), Positives = 194/248 (78%), Gaps = 1/248 (0%)
Query: 9 NVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
NV+V GSGE+V+VL+HGFGTDQS W ++P+L D+RVVLYD + AG+ NPD+FDF RY
Sbjct: 11 NVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYD 70
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDV 128
L+ Y DLLAIL+ L+I C VGHSVSAMIG +ASI RPDLF KLV+I SPR+LND
Sbjct: 71 NLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDS 130
Query: 129 DYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALS 188
DY+GGFE EE+ Q+F+AM +NY AW +G+APLAVG D+ + AVQEFSRTLFNMRPDI+L
Sbjct: 131 DYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPA-AVQEFSRTLFNMRPDISLH 189
Query: 189 VAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGHLP 248
V QT+F++D+R +LG+V PC ++Q+ +D++VP ++ YL +L + VE + ++GHLP
Sbjct: 190 VCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTEGHLP 249
Query: 249 QLSSPDIV 256
LS+P ++
Sbjct: 250 HLSAPSLL 257
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 320 bits (820), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 145/248 (58%), Positives = 194/248 (78%), Gaps = 1/248 (0%)
Query: 9 NVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
NV+V GSGE+V+VL+HGFGTDQS W ++P+L D+RVVLYD + AG+ NPD+FDF RY
Sbjct: 9 NVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYD 68
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDV 128
L+ Y DLLAIL+ L+I C VGHSVSAMIG +ASI RPDLF KLV+I SPR+LND
Sbjct: 69 NLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDS 128
Query: 129 DYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALS 188
DY+GGFE EE+ Q+F+AM +NY AW +G+APLAVG D+ + AVQEFSRTLFNMRPDI+L
Sbjct: 129 DYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPA-AVQEFSRTLFNMRPDISLH 187
Query: 189 VAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGHLP 248
V QT+F++D+R +LG+V PC ++Q+ +D++VP ++ YL +L + VE + ++GHLP
Sbjct: 188 VCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTEGHLP 247
Query: 249 QLSSPDIV 256
LS+P ++
Sbjct: 248 HLSAPSLL 255
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 320 bits (819), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 147/248 (59%), Positives = 198/248 (79%), Gaps = 1/248 (0%)
Query: 6 EAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFN 65
EA NV+V G+G++++ LAHGFGTDQS W ++P+ +YRVVLYD + AG+ NPDYFDFN
Sbjct: 8 EALNVRVVGTGDRILFLAHGFGTDQSAWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDFN 67
Query: 66 RYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYL 125
RY+TL+ Y DLL I++ L I +C VGHSVSAMIG IASI RP+LF+KL++I SPR+L
Sbjct: 68 RYTTLDPYVDDLLNIVDSLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPRFL 127
Query: 126 NDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDI 185
ND DY+GGFE+ E++++F AM +NY+AW GFAPLAVG D+ + AV+EFSRTLFNMRPDI
Sbjct: 128 NDEDYHGGFEEGEIEKVFSAMEANYEAWVHGFAPLAVGADVPA-AVREFSRTLFNMRPDI 186
Query: 186 ALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDG 245
+L V++T+F SD+R +LGLV VP +IQ+ KD++VP ++EYL +L D+ VE + ++G
Sbjct: 187 SLFVSRTVFNSDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKTEG 246
Query: 246 HLPQLSSP 253
HLPQLS+P
Sbjct: 247 HLPQLSAP 254
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 320 bits (819), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 148/251 (58%), Positives = 196/251 (78%), Gaps = 1/251 (0%)
Query: 6 EAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFN 65
+A NV+V GSGE+V+VLAHGFGTDQS W ++P + DYRVVLYD + AG+ NPD+FDF
Sbjct: 9 DALNVRVVGSGERVLVLAHGFGTDQSAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFR 68
Query: 66 RYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYL 125
RY+TL+ Y DLL IL+ L ID C VGH+VSAMIG +ASI RP+LF+KL++I SPR+L
Sbjct: 69 RYTTLDPYVDDLLHILDALGIDCCAYVGHAVSAMIGILASIRRPELFSKLILIGASPRFL 128
Query: 126 NDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDI 185
ND DY+GGFEQ E++++F AM +NY+AW +GFAPLAVG D+ + AV+EFSRTLFNMRPDI
Sbjct: 129 NDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADVPA-AVREFSRTLFNMRPDI 187
Query: 186 ALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDG 245
L V++T+F SDMR +LGLV VPCHI Q+ +D +VP ++ YL +L + V ++ +G
Sbjct: 188 TLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGGKNTVHWLNIEG 247
Query: 246 HLPQLSSPDIV 256
HLP LS+P ++
Sbjct: 248 HLPHLSAPTLL 258
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/250 (42%), Positives = 150/250 (60%), Gaps = 2/250 (0%)
Query: 9 NVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
+VKV GSG+ I+ A GFG DQSVW + P +D+RV+L+D +G+G ++ +D NRY
Sbjct: 12 HVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQ 71
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLND- 127
TL+GYA D+L + E L + + VGHSV A+IG +ASI RP+LF+ LVM+ SP YLND
Sbjct: 72 TLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDP 131
Query: 128 VDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIAL 187
+YYGGFE+E+L L E M NY W + FA + +E + P IA
Sbjct: 132 PEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIAR 191
Query: 188 SVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGHL 247
A+ F SD R+ L V+VP I+Q D+ P + +Y+HQ+L S+ + M + GH
Sbjct: 192 QFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQ-MEARGHC 250
Query: 248 PQLSSPDIVI 257
P +S PD I
Sbjct: 251 PHMSHPDETI 260
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 167 bits (423), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 144/256 (56%), Gaps = 2/256 (0%)
Query: 4 VEEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFD 63
V + +N+ +TG GE+ ++LAHGFG DQ+ W+ +P L + V+++D +G+G ++ + F
Sbjct: 15 VVKRNNINITGGGEKTVLLAHGFGCDQNXWRFXLPELEKQFTVIVFDYVGSGQSDLESFS 74
Query: 64 FNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPR 123
RYS+LEGYA D+ IL L + + ++GHSVS++I IAS D + + I SP
Sbjct: 75 TKRYSSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITXICPSPC 134
Query: 124 YLN-DVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMR 182
+ N DY GGFE+++L++L NY W + APL G S + E S +
Sbjct: 135 FXNFPPDYVGGFERDDLEELINLXDKNYIGWANYLAPLVXGASHSSELIGELSGSFCTTD 194
Query: 183 PDIALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMS 242
P +A + A+ F SD R +L +S P I QS KD + +Y +N + +S +E++
Sbjct: 195 PIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYXAEN-IPNSQLELIQ 253
Query: 243 SDGHLPQLSSPDIVIP 258
++GH + ++ P
Sbjct: 254 AEGHCLHXTDAGLITP 269
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 101/248 (40%), Gaps = 29/248 (11%)
Query: 19 VIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLL 78
V+VL G G S W + L +Y+VV YD G G NPD + YS + A +L
Sbjct: 17 VVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGN-NPDTLAED-YSIAQ-XAAELH 73
Query: 79 AILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPR---------YLNDVD 129
L I+ +VGH++ A++G ++ P T L+ ++G R + +
Sbjct: 74 QALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERL 133
Query: 130 YYGGFEQE--ELDQLFEAMRSNYKA-WCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIA 186
Y G Q E LF Y A W + AP D++A+ F +R A
Sbjct: 134 LYSGGAQAWVEAQPLFL-----YPADWXAARAPRLEA--EDALALAHFQGKNNLLRRLNA 186
Query: 187 LSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGH 246
L A +D + P II + DL VP S LH L DS V GH
Sbjct: 187 LKRADFSHHADR------IRCPVQIICASDDLLVPTACSSELHA-ALPDSQKXVXPYGGH 239
Query: 247 LPQLSSPD 254
++ P+
Sbjct: 240 ACNVTDPE 247
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 25/242 (10%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAG-----TTNPDYFDFNRY 67
G+G Q +VL HGF W+ L+D YRV+ YD G G TT DY
Sbjct: 21 GTG-QPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY------ 73
Query: 68 STLEGYALDLLAILEELQIDSCILVGHSV-SAMIGAIASISRPDLFTKLVMISGSPRYL- 125
+ +A DL +LE L + +LVG S+ + + S K+ ++ +L
Sbjct: 74 ---DTFAADLNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLL 130
Query: 126 -NDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAP--LAVGGDMDSVAVQEFSRTLFNMR 182
D + G QE D + A++++ A+ +GF + ++ + +E R +N
Sbjct: 131 KTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTA 190
Query: 183 PDIALSVAQ---TIFQSDMRQILGLVSVPCHIIQSVKDLAVPVV-ISEYLHQNLLVDSVV 238
A T + +D R + + VP I+ D +P+ + H+ L V
Sbjct: 191 ASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYV 250
Query: 239 EV 240
EV
Sbjct: 251 EV 252
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 25/242 (10%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAG-----TTNPDYFDFNRY 67
G+G Q +VL HGF W+ L+D YRV+ YD G G TT DY
Sbjct: 21 GTG-QPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY------ 73
Query: 68 STLEGYALDLLAILEELQIDSCILVGHSV-SAMIGAIASISRPDLFTKLVMISGSPRYL- 125
+ +A DL +LE L + +LVG S + + S K+ ++ +L
Sbjct: 74 ---DTFAADLNTVLETLDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLL 130
Query: 126 -NDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAP--LAVGGDMDSVAVQEFSRTLFNMR 182
D + G QE D + A++++ A+ +GF + ++ + +E R +N
Sbjct: 131 KTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTA 190
Query: 183 PDIALSVAQ---TIFQSDMRQILGLVSVPCHIIQSVKDLAVPVV-ISEYLHQNLLVDSVV 238
A T + +D R + + VP I+ D +P+ + H+ L V
Sbjct: 191 ASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYV 250
Query: 239 EV 240
EV
Sbjct: 251 EV 252
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 25/242 (10%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAG-----TTNPDYFDFNRY 67
G+G Q +VL HGF W+ L+D YRV+ YD G G TT DY
Sbjct: 21 GAG-QPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY------ 73
Query: 68 STLEGYALDLLAILEELQIDSCILVGHSV-SAMIGAIASISRPDLFTKLVMISGSPRYL- 125
+ +A DL +LE L + +LVG S+ + + S K+ ++ +L
Sbjct: 74 ---DTFAADLNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLL 130
Query: 126 -NDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAP--LAVGGDMDSVAVQEFSRTLFNMR 182
D + G +E D + A++++ A+ +GF + ++ + +E R +N
Sbjct: 131 KTDDNPDGAAPKEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTA 190
Query: 183 PDIALSVAQ---TIFQSDMRQILGLVSVPCHIIQSVKDLAVPVV-ISEYLHQNLLVDSVV 238
A T + +D R + + VP I+ D +P+ + H+ L V
Sbjct: 191 ASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYV 250
Query: 239 EV 240
EV
Sbjct: 251 EV 252
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 44/246 (17%)
Query: 20 IVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAG-----TTNPDYFDFNRYSTLEGY 73
+VL HGF W+ L+D YRV+ YD G G TT DY + +
Sbjct: 27 VVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDY---------DTF 77
Query: 74 ALDLLAILEELQIDSCILVGHSV-------------SAMIGAIASISRPDLFTKLVMISG 120
A DL +LE L + +LVG S+ +A I A+A ++ + F L+
Sbjct: 78 AADLNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPF--LLKTDD 135
Query: 121 SPRYLNDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAP--LAVGGDMDSVAVQEFSRTL 178
+P G QE D + A++++ A+ +GF + ++ + +E R
Sbjct: 136 NPD--------GAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNS 187
Query: 179 FNMRPDIALSVAQ---TIFQSDMRQILGLVSVPCHIIQSVKDLAVPVV-ISEYLHQNLLV 234
+N A T + +D R + + VP I+ D +P+ + H+ L
Sbjct: 188 WNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPS 247
Query: 235 DSVVEV 240
VEV
Sbjct: 248 AEYVEV 253
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 93/240 (38%), Gaps = 19/240 (7%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLV-DDYRVVLYDNMGAGTTNPDYFDFNRYSTLEG 72
GSG Q +VL HG+ D W+ L+ YRV+ YD G G ++ N +
Sbjct: 21 GSG-QPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSS----KVNTGYDYDT 75
Query: 73 YALDLLAILEELQIDSCILVGHSVSA--MIGAIASISRPDLFTKLVMISGSPRYLNDVDY 130
+A DL +LE L + +LVG S+ + +A + + S P + D
Sbjct: 76 FAADLHTVLETLDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDN 135
Query: 131 YGGFEQEELDQLFEAMRSNYKAWCSGFAP------LAVGGDMDSVAVQEFSRTLFNMRPD 184
G QE D + A + + AW + F +G + AV P
Sbjct: 136 PEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDENLGSRISEQAVTGSWNVAIGSAPV 195
Query: 185 IALSVAQTI---FQSDMRQILGLVSVPCHIIQSVKDLAVPV-VISEYLHQNLLVDSVVEV 240
A +V F+SD+ + P I+ KD +P+ + HQ + VEV
Sbjct: 196 AAYAVVPAWIEDFRSDVEAVRA-AGKPTLILHGTKDNILPIDATARRFHQAVPEADYVEV 254
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 9 NVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
NV+ GSG + HG ++ +V++ L L D + + D G G ++ +
Sbjct: 61 NVREKGSGPLXLFF-HGITSNSAVFEPLXIRLSDRFTTIAVDQRGHGLSDKPETGYE--- 116
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDV 128
YA D+ ++ L ILVGHS+ A A+ PDL +V I +P Y+
Sbjct: 117 -ANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTP-YI--- 171
Query: 129 DYYGGFEQEELD----------QLFEAMRSNYKAWCSGFAP 159
E E LD QLFE +++ +A+ +G P
Sbjct: 172 ------ETEALDALEARVNAGSQLFEDIKA-VEAYLAGRYP 205
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 9 NVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
V V GSG +++L HG+ W + P L +DY VVL D G G + + YS
Sbjct: 24 RVAVKGSGPPLLLL-HGYPQTHLAWHRIAPRLAEDYSVVLADLRGYGESRALDEEGADYS 82
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSP 122
A D L + +L + ++GH A +G ++ P V ++ P
Sbjct: 83 K-AALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTVVP 135
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Query: 9 NVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN-----PDYFD 63
N V GSG +++L HGF + +W + P L ++Y VV D G G ++ PD+ +
Sbjct: 18 NCVVGGSGPALLLL-HGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHAN 76
Query: 64 FNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPR 123
+ + A D ++ L + LVGH+ G ++ PD L ++ P
Sbjct: 77 Y----SFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132
Query: 124 Y--LNDVDYY 131
Y +VD +
Sbjct: 133 YVMFEEVDRF 142
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 9 NVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN-----PDYFD 63
N V GSG +++L HGF + +W + P L ++Y VV D G G ++ PD+ +
Sbjct: 18 NCVVGGSGPALLLL-HGFPQNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHAN 76
Query: 64 FNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPR 123
+ + A D ++ L + LVGH G ++ PD L ++ P
Sbjct: 77 Y----SFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAVLDIIPT 132
Query: 124 Y--LNDVDYY 131
Y +VD +
Sbjct: 133 YVMFEEVDRF 142
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 101/244 (41%), Gaps = 18/244 (7%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYSTLEG 72
G+G+ V VL HG+ W++ VP LV+ YRV+ YD G G ++ + + Y T
Sbjct: 25 GTGKPV-VLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGY-EYDT--- 79
Query: 73 YALDLLAILEELQIDSCILVGHSVSA-MIGAIASISRPDLFTKLVMISGSPRYLNDVDYY 131
+ DL +LE+L++ + LVG S + S D K+V P YL + +
Sbjct: 80 FTSDLHQLLEQLELQNVTLVGFSXGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDH 139
Query: 132 --GGFEQEELDQLFEAMRSNYKAWCSGFAP-LAVGGDMDSVAVQEFSRTLFNM------R 182
G + ++ + ++ A+ F GD + + F L+N
Sbjct: 140 PEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFR--LYNWDIAAGAS 197
Query: 183 PDIALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMS 242
P L ++D R+ L ++P II D VP S L + +S V ++
Sbjct: 198 PKGTLDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIPNSKVALIK 257
Query: 243 SDGH 246
H
Sbjct: 258 GGPH 261
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVP-HLVDDYRVVLYDNMGAGTT-NPDYFDFNRYSTLE 71
G+G+ V+ +A G ++ H VP L YR + +DN G G T N + F T +
Sbjct: 41 GTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEGF------TTQ 94
Query: 72 GYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDVDYY 131
D A++E L I +VG S+ A I + P+L + V+++ R ++
Sbjct: 95 TMVADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFF 154
Query: 132 GGFEQEELD 140
E E D
Sbjct: 155 NKAEAELYD 163
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 20 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 80 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
R + D + F +E LF+A R+
Sbjct: 131 FI-RPIPTWDEWPEFARE----LFQAFRT 154
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 10 VKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN-PDYFDFNRYS 68
+V G G +++L HGF +W + P L + ++V++ D G G ++ P+ + +
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRY 124
T A L+ +E+L L GH+ A + ++ P +KL ++ P Y
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 10 VKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN-PDYFDFNRYS 68
+V G G +++L HGF +W + P L + ++V++ D G G ++ P+ + +
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRY 124
T A L+ +E+L L GH A + ++ P +KL ++ P Y
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 10 VKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN-PDYFDFNRYS 68
+V G G +++L HGF +W + P L + ++V++ D G G ++ P+ + +
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRY 124
T A L+ +E+L L GH A + ++ P +KL ++ P Y
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 10 VKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN-PDYFDFNRYS 68
+V G G +++L HGF +W + P L + ++V++ D G G ++ P+ + +
Sbjct: 27 ARVGGDGPPLLLL-HGFPQTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPY 85
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRY 124
T A L+ +E+L L GH A + ++ P +KL ++ P Y
Sbjct: 86 TKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDILPTY 141
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 19 VIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYAL-- 75
++VL HGF W+H +P L YRVV D G G + ++Y + Y +
Sbjct: 35 LVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRS-------SKYRVQKAYRIKE 87
Query: 76 ---DLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
D++ +L+ + +VGH A + + PD +V IS
Sbjct: 88 LVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGIS 134
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 19 VIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYAL-- 75
++VL HGF W+H +P L YRVV D G G + ++Y + Y +
Sbjct: 29 LVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRGYGRS-------SKYRVQKAYRIKE 81
Query: 76 ---DLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
D++ +L+ + +VGH A + + PD +V IS
Sbjct: 82 LVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGIS 128
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 105/262 (40%), Gaps = 30/262 (11%)
Query: 11 KVTGSGEQVIVLAHGFGTDQSVWKHLVPHLV-DDYRVVLYDNMGAGTTNPDYFDFNRYST 69
K GSG Q IV +HG+ + W+ + L YRV+ +D G G ++ + +
Sbjct: 14 KDWGSG-QPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPW----SGND 68
Query: 70 LEGYALDLLAILEELQIDSCILVGHS-----VSAMIG--AIASISRPDLFTKLVMISGSP 122
++ YA DL ++E L + +L G S V+ IG A +++ L + + P
Sbjct: 69 MDTYADDLAQLIEHLDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAV-----PP 123
Query: 123 RYLNDVDYYGGFEQEELDQLFEAMRSN----YKAWCSG--FAPLAVGGDMDSVAVQEFSR 176
L GG E D + +A ++ YK SG F G + V F
Sbjct: 124 LMLKTEANPGGLPMEVFDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWL 183
Query: 177 TLFNMRPDIALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDS 236
A + ++D + L + VP ++ D VP+ S L+ S
Sbjct: 184 QGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDADQVVPIEASGIASAALVKGS 243
Query: 237 VVEVMS------SDGHLPQLSS 252
+++ S +D H QL++
Sbjct: 244 TLKIYSGAPHGLTDTHKDQLNA 265
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 105/251 (41%), Gaps = 23/251 (9%)
Query: 11 KVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTL 70
+ G G +VL HG+G + VW+ + L + + L D G F R
Sbjct: 7 QTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPG----------FGRSRGF 56
Query: 71 EGYAL-DLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDVD 129
+L D+ + + D I +G ++ ++ + +++ P+ LV ++ SP + + D
Sbjct: 57 GALSLADMAEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVASSPCF-SARD 115
Query: 130 YYGGFEQEELDQLFEAMRSNYKAWCSGFAPL-AVGGDMDSVAVQEFSRTLFNM-RPDI-- 185
+ G + + L + + +++ F L +G + + +T+ + P++
Sbjct: 116 EWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARALKKTVLALPMPEVDV 175
Query: 186 ---ALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMS 242
L + +T+ D+RQ L VS+P + D VP + L + L S + +
Sbjct: 176 LNGGLEILKTV---DLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDK-LWPHSESYIFA 231
Query: 243 SDGHLPQLSSP 253
H P +S P
Sbjct: 232 KAAHAPFISHP 242
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 11 KVTGSGEQ-VIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN--PDYFDFNRY 67
++ G+ E+ ++ L++ GT W +P L +RV+ YD G G ++ P + R
Sbjct: 20 RLDGAAEKPLLALSNSIGTTLHXWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARL 79
Query: 68 STLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGS 121
D+L +L+ L++ +G S+ ++G ++ P +LV+ + S
Sbjct: 80 GE------DVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTS 127
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 86/238 (36%), Gaps = 17/238 (7%)
Query: 20 IVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLLA 79
IVL++ GTD S W V L +RV+ YD G G + + T+E D+L
Sbjct: 29 IVLSNSLGTDLSXWAPQVAALSKHFRVLRYDTRGHGHSEAPKGPY----TIEQLTGDVLG 84
Query: 80 ILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDVDYYGGFEQEEL 139
+ + L+I G S + G + D ++ + + + R G + +
Sbjct: 85 LXDTLKIARANFCGLSXGGLTGVALAARHADRIERVALCNTAARI--------GSPEVWV 136
Query: 140 DQLFEAMRSNYKAWCSGFAPLAVGGD---MDSVAVQEFSRTLFNMRPDIALSVAQTIFQS 196
+ +A A P D + V + + + S + I +
Sbjct: 137 PRAVKARTEGXHALADAVLPRWFTADYXEREPVVLAXIRDVFVHTDKEGYASNCEAIDAA 196
Query: 197 DMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGHLPQLSSPD 254
D+R + VP +I DLA L Q + VE+ +S H+ + D
Sbjct: 197 DLRPEAPGIKVPALVISGTHDLAATPAQGRELAQAIAGARYVELDAS--HISNIERAD 252
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 15/153 (9%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 20 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 80 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRSNYKA 152
R + D + E E EA R ++A
Sbjct: 131 FI-RPIPTWDEFHHTEVAEEQDHAEAARETFQA 162
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 15/153 (9%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 20 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 80 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRSNYKA 152
R + D + E E EA R ++A
Sbjct: 131 FI-RPIPTWDEFHHTEVAEEQDHAEAARETFQA 162
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 20 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 80 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
R + D + F +E F+A R+
Sbjct: 131 FI-RPIPTWDEWPEFARE----TFQAFRT 154
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 15/247 (6%)
Query: 11 KVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTL 70
+ G G +VL HG+G + VW+ + L + + L D G G + F S
Sbjct: 7 QTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSR----GFGALSLA 62
Query: 71 EGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDVDY 130
+ A+L++ D I +G S+ ++ + +++ P+ LV ++ SP + + D
Sbjct: 63 DXAE----AVLQQAP-DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCF-SARDE 116
Query: 131 YGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGD----MDSVAVQEFSRTLFNMRPDIA 186
+ G + + L + + + + F L G D+ A+++ L D+
Sbjct: 117 WPGIKPDVLAGFQQQLSDDQQRTVERFLALQTXGTETARQDARALKKTVLALPXPEVDVL 176
Query: 187 LSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGH 246
+ + D+RQ L VS P + D VP + L + L S + + H
Sbjct: 177 NGGLEILKTVDLRQPLQNVSXPFLRLYGYLDGLVPRKVVPXLDK-LWPHSESYIFAKAAH 235
Query: 247 LPQLSSP 253
P +S P
Sbjct: 236 APFISHP 242
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 17 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 76
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 77 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 127
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
R + D + F +E F+A R+
Sbjct: 128 FI-RPIPTWDEWPEFARE----TFQAFRT 151
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 20 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 80 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
R + D + F +E F+A R+
Sbjct: 131 FI-RPIPTWDEWPEFARE----TFQAFRT 154
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 20 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 80 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
R D + F +E F+A R+
Sbjct: 131 FI-RPFPTWDEWPEFARE----TFQAFRT 154
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 20 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 80 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
R D + F +E F+A R+
Sbjct: 131 FI-RPFPTWDEWPEFARE----TFQAFRT 154
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 20 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 80 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
R D + F +E F+A R+
Sbjct: 131 FI-RPFPTWDEWPEFARE----TFQAFRT 154
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 17 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 76
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E L ++ +LV H + +G + P+ + +
Sbjct: 77 FFDDHVRY---------LDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 127
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
R D + F +E F+A R+
Sbjct: 128 FI-RPFPTWDEWPEFARE----TFQAFRT 151
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 19/149 (12%)
Query: 5 EEAHNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP---DY 61
E H V V ++ HG T +W++++PH+ +R + D +G G ++ DY
Sbjct: 20 ERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSDKPDLDY 79
Query: 62 F--DFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
F D RY L A +E + ++ +LV H + +G + P+ + +
Sbjct: 80 FFDDHVRY---------LDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Query: 120 GSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
R + D + F +E F+A R+
Sbjct: 131 FI-RPIPTWDEWPEFARE----TFQAFRT 154
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 20 IVLAHGFGTDQSVWK-HLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLL 78
+++ HG + +++ L + +RV+ D G G + D D +R ++EGYA +
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKST-DAIDPDRSYSMEGYADAMT 85
Query: 79 AILEELQIDSCILVGHSVSAMIGAIASISR-PDLFTKLVMISGSPRYLNDVDYYGGFEQE 137
++++L I ++ G S+ IG I I+R P++ + +MI+G+P +E
Sbjct: 86 EVMQQLGIADAVVFGWSLGGHIG-IEMIARYPEM--RGLMITGTPPVA----------RE 132
Query: 138 ELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALSVAQTIFQS- 196
E+ Q F++ A F+ V S + F +L ++ + +F+
Sbjct: 133 EVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKF 192
Query: 197 ------DMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGHLPQL 250
+ R I+ +P ++ + V + + L + V+ + GH P
Sbjct: 193 GSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTHVIDNAGHAPFR 252
Query: 251 SSP 253
+P
Sbjct: 253 EAP 255
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 22/116 (18%)
Query: 14 GSGEQVIVLA-HGFGTDQSVWKHL-VPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLE 71
GS E +VL HG W+ + +P YRVV PD F R S LE
Sbjct: 22 GSPEHPVVLCIHGILEQGLAWQEVALPLAAQGYRVV----------APDLFGHGRSSHLE 71
Query: 72 ---GYA-LDLLA----ILEELQIDSCILVGHSVSAMIG-AIASISRPDLFTKLVMI 118
Y+ L LA +++EL +LVGHS+ AM+ AIAS+ RP +L+++
Sbjct: 72 MVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASV-RPKKIKELILV 126
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 28/251 (11%)
Query: 11 KVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYST 69
K GSG+ V+ +HG+ D +W++ + +L YR + +D G G ++ + N Y T
Sbjct: 14 KDWGSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTG-NDYDT 71
Query: 70 LEGYALDLLAILEELQIDSCILVGHSVSAMIGAIAS-ISR--PDLFTKLVMISG-SPRYL 125
+A D+ ++E L + LVG S+ G +A I+R LV++ +P +
Sbjct: 72 ---FADDIAQLIEHLDLKEVTLVGFSMGG--GDVARYIARHGSARVAGLVLLGAVTPLFG 126
Query: 126 NDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVG---GDMDSVAVQEFSRTL---- 178
DY G + + + + + S F G G + S VQ ++TL
Sbjct: 127 QKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQ--TQTLQIAL 184
Query: 179 ---FNMRPDIALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVD 235
D + A+T F+ DM +I VP +I D VP + + L+
Sbjct: 185 LASLKATVDCVTAFAETDFRPDMAKI----DVPTLVIHGDGDQIVPFETTGKVAAELIKG 240
Query: 236 SVVEVMSSDGH 246
+ ++V H
Sbjct: 241 AELKVYKDAPH 251
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 14 GSGEQVIVLAHGFGTDQSVW----KHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYST 69
G G++ +VL HG G + W +++ P + YRV+L D G G ++ N S
Sbjct: 33 GQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVV---NSGSR 89
Query: 70 LEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISG 120
+ A L +++++L I L+G+S+ ++ P+ KLV++ G
Sbjct: 90 SDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGG 140
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 28/226 (12%)
Query: 13 TGSGEQVIVLAHG-FGTDQSVWKHLVPHLVDD-YRVVLYDNMGAGTTNPDYFDFNRYSTL 70
TG G+ ++L G G+ ++ + + +L + VV +D G G + P DF
Sbjct: 19 TGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPA-DFF 77
Query: 71 EGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDVDY 130
E A D + +++ L+ L+G S + IA+ P K+V I G+ Y+ D D
Sbjct: 78 ERDAKDAVDLMKALKFKKVSLLGWSNGGITALIAAAKYPSYIHKMV-IWGANAYVTDED- 135
Query: 131 YGGFEQEELDQLFEAMRSNYKAWCSGFAPLAV--GGDMDSVAVQEFSRTL--FNMRPDIA 186
++E +R K PL G D + +++ + F PD
Sbjct: 136 ---------SMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGN 186
Query: 187 LSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNL 232
+ R +L V P I+ KD VP ++++H+++
Sbjct: 187 IC----------RHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV 222
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 28/251 (11%)
Query: 11 KVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYST 69
K GSG+ V+ +HG+ D +W++ + +L YR + +D G G ++ + N Y T
Sbjct: 14 KDWGSGKPVL-FSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTG-NDYDT 71
Query: 70 LEGYALDLLAILEELQIDSCILVGHSVSAMIGAIAS-ISR--PDLFTKLVMISG-SPRYL 125
+A D+ ++E L + LVG S+ G +A I+R LV++ +P +
Sbjct: 72 ---FADDIAQLIEHLDLKEVTLVGFSMGG--GDVARYIARHGSARVAGLVLLGAVTPIFG 126
Query: 126 NDVDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVG---GDMDSVAVQEFSRTL---- 178
DY G + + + + + S F G G + S VQ ++TL
Sbjct: 127 QKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQ--TQTLQIAL 184
Query: 179 ---FNMRPDIALSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVD 235
D + A+T F+ DM +I VP +I D VP + + L+
Sbjct: 185 LASLKATVDCVTAFAETDFRPDMAKI----DVPTLVIHGDGDQIVPFETTGKVAAELIKG 240
Query: 236 SVVEVMSSDGH 246
+ ++V H
Sbjct: 241 AELKVYKDAPH 251
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 28/226 (12%)
Query: 13 TGSGEQVIVLAHG-FGTDQSVWKHLVPHLVDD-YRVVLYDNMGAGTTNPDYFDFNRYSTL 70
TG G+ ++L G G+ ++ + + +L + VV +D G G + P DF
Sbjct: 19 TGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPA-DFF 77
Query: 71 EGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDVDY 130
E A D + +++ L+ L+G S + IA+ P K+V I G+ Y+ D D
Sbjct: 78 ERDAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMV-IWGANAYVTDED- 135
Query: 131 YGGFEQEELDQLFEAMRSNYKAWCSGFAPLAV--GGDMDSVAVQEFSRTL--FNMRPDIA 186
++E +R K PL G D + +++ + F PD
Sbjct: 136 ---------SMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGN 186
Query: 187 LSVAQTIFQSDMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNL 232
+ R +L V P I+ KD VP ++++H+++
Sbjct: 187 IC----------RHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV 222
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 20 IVLAHGFGTDQSVWK-HLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLL 78
+++ HG + +++ L + +RV+ D G G + D D +R ++EGYA +
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKST-DAIDPDRSYSMEGYADAMT 85
Query: 79 AILEELQIDSCILVGHSVSAMIGAIASISR-PDLFTKLVMISGSPRYLNDVDYYGGFEQE 137
++++L I ++ G S+ IG I I+R P++ + +MI+G+P +E
Sbjct: 86 EVMQQLGIADAVVFGWSLGGHIG-IEMIARYPEM--RGLMITGTPPVA----------RE 132
Query: 138 ELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALSVAQTIFQS- 196
E+ Q F++ A F+ V S + F +L ++ + +F+
Sbjct: 133 EVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKF 192
Query: 197 ------DMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGHLPQL 250
+ R I+ +P ++ V + + L + V+ + GH P
Sbjct: 193 GSGTGGNQRDIVAEAQLPIAVVNGRDGPFVELDFVSKVKFGNLWEGKTHVIDNAGHAPFR 252
Query: 251 SSP 253
+P
Sbjct: 253 EAP 255
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 11 KVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYST 69
K TG+ + +I ++HG G ++ L L+ D V +D++G G + + + +
Sbjct: 54 KPTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHV 113
Query: 70 LEGYALDLLAILEELQID----SCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
+ D+L ++ +Q D L+GHS+ I + + RP F +V+IS
Sbjct: 114 ---FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLIS 164
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 102/243 (41%), Gaps = 23/243 (9%)
Query: 20 IVLAHGFGTDQSVWK-HLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLL 78
+++ HG + +++ L + +RV+ D G G + D D +R ++EGYA +
Sbjct: 27 LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKST-DAIDPDRSYSMEGYADAMT 85
Query: 79 AILEELQIDSCILVGHSVSAMIGAIASISR-PDLFTKLVMISGSPRYLNDVDYYGGFEQE 137
++++L I ++ G + IG I I+R P++ + +MI+G+P +E
Sbjct: 86 EVMQQLGIADAVVFGWGLGGHIG-IEMIARYPEM--RGLMITGTPPVA----------RE 132
Query: 138 ELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALSVAQTIFQS- 196
E+ Q F++ A F+ V S + F +L ++ + +F+
Sbjct: 133 EVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFEKF 192
Query: 197 ------DMRQILGLVSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGHLPQL 250
+ R I+ +P ++ + V + + L + V+ + GH P
Sbjct: 193 GSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTHVIDNAGHAPFR 252
Query: 251 SSP 253
+P
Sbjct: 253 EAP 255
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 11 KVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYST 69
K TG+ + +I ++HG G ++ L L+ D V +D++G G + + + +
Sbjct: 53 KPTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHV 112
Query: 70 LEGYALDLLAILEELQID----SCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
+ D+L ++ +Q D L+GHS+ I + + RP F +V+IS
Sbjct: 113 ---FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLIS 163
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 9 NVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN-----PDYFD 63
N+ G G +++L HG+ +W + P L +++ VV D G G ++ P + +
Sbjct: 18 NLVKAGHGAPLLLL-HGYPQTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHIN 76
Query: 64 FNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPR 123
+++ A D + ++ +L + +VGH A + ++ P KL ++ +P
Sbjct: 77 YSKRVM----AQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIAPT 132
Query: 124 Y 124
+
Sbjct: 133 H 133
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 16 GEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT----NPDYFDFNRYSTLE 71
E ++ HG T +W+H+VPH+ R ++ D +G G + N Y + Y L
Sbjct: 43 AENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLT 102
Query: 72 GYALDLLAILEELQIDSCILVGHSVSAMIG 101
+ +LL + +++ I VGH A +
Sbjct: 103 AW-FELLNLPKKI-----IFVGHDWGAALA 126
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 16 GEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT----NPDYFDFNRYSTLE 71
E ++ HG T +W+H+VPH+ R ++ D +G G + N Y + Y L
Sbjct: 43 AENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLT 102
Query: 72 GYALDLLAILEELQIDSCILVGHSVSAMIG 101
+ +LL + +++ I VGH A +
Sbjct: 103 AW-FELLNLPKKI-----IFVGHDWGAALA 126
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 16 GEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT----NPDYFDFNRYSTLE 71
E ++ HG T +W+H+VPH+ R ++ D +G G + N Y + Y L
Sbjct: 42 AENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLT 101
Query: 72 GYALDLLAILEELQIDSCILVGHSVSAMIG 101
+ +LL + +++ I VGH A +
Sbjct: 102 AW-FELLNLPKKI-----IFVGHDWGAALA 125
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 16 GEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT----NPDYFDFNRYSTLE 71
E ++ HG T +W+H+VPH+ R ++ D +G G + N Y + Y L
Sbjct: 42 AENAVIFLHGNATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSGNGSYRLLDHYKYLT 101
Query: 72 GYALDLLAILEELQIDSCILVGHSVSAMIG 101
+ +LL + +++ I VGH A +
Sbjct: 102 AW-FELLNLPKKI-----IFVGHDWGAALA 125
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 18 QVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMG-AGTTNPDYFDFNRYSTLEGYAL 75
+ I+L HG W+ + L D YRV+ D +G ++ P ++ + + + A
Sbjct: 47 RTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHYQY----SFQQLAA 102
Query: 76 DLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
+ A+LE L + ++GHS + ++ P +LV+++
Sbjct: 103 NTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVN 146
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 13 TGSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYSTLE 71
TG+ + +I ++HG G ++ L L+ D V +D++G G + + + +
Sbjct: 38 TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSDFHV-- 95
Query: 72 GYALDLLAILEELQID----SCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
+ D+L ++ +Q D L+GHS+ I + + RP F +V+IS
Sbjct: 96 -FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLIS 146
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 18 QVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAG---TTNPDYFDFNRYSTLEGYA 74
QV+V HGF +D + + + D+Y V+ D G G ++ + ++F+ +TL
Sbjct: 17 QVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSSMDETWNFDYITTL---- 72
Query: 75 LDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSP 122
L IL++ + S L G+S+ + +I+ + L++ S SP
Sbjct: 73 --LDRILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSP 118
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTN--PDYFDFNRYSTL 70
GSG + L HGF W++ +P L YRV+ D G G ++ P+ ++ +
Sbjct: 37 GSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEY----CM 91
Query: 71 EGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPD 110
E +++ L++L + + +GH M+ ++ P+
Sbjct: 92 EVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPE 131
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTN--PDYFDFNRYSTL 70
GSG V L HGF W++ +P L YRV+ D G G ++ P+ ++ +
Sbjct: 256 GSGPAV-CLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEY----CM 310
Query: 71 EGYALDLLAILEELQIDSCILVGHSVSAM------------IGAIASISRPDL-----FT 113
E +++ L++L + + +GH M + A+AS++ P + +
Sbjct: 311 EVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMS 370
Query: 114 KLVMISGSPRYLNDVDYY---GGFEQEELDQ-LFEAMRSNYKA 152
L I +P + D Y G + EL+Q L +S ++A
Sbjct: 371 PLESIKANPVF--DYQLYFQEPGVAEAELEQNLSRTFKSLFRA 411
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTN--PDYFDFNRYSTL 70
GSG + L HGF W++ +P L YRV+ D G G ++ P+ ++ +
Sbjct: 52 GSGP-AVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEY----CM 106
Query: 71 EGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPD 110
E +++ L++L + + +GH M+ ++ P+
Sbjct: 107 EVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPE 146
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 20 IVLAHG-FGTDQSVWKHLVPHLVDDYRVVLYD--NMGAGTTNPDYFDFNRYSTLEGYALD 76
IVL HG FG+ ++ L LV+D+ ++ D N G P A D
Sbjct: 19 IVLVHGLFGSLDNL-GVLARDLVNDHNIIQVDVRNHGLSPREP-------VMNYPAMAQD 70
Query: 77 LLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDVDYYGGFEQ 136
L+ L+ LQID +GHS+ + PD KLV I +P VDY+
Sbjct: 71 LVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP-----VDYH----V 121
Query: 137 EELDQLFEAMRS 148
D++F A+ +
Sbjct: 122 RRHDEIFAAINA 133
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYSTLEG 72
GSG + L HGF W++ +P L +RV+ D G G D + +E
Sbjct: 254 GSGP-ALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYG-------DSSSPPEIEE 305
Query: 73 YALDLLA-----ILEELQIDSCILVGHSVSAM------------IGAIASISRP 109
YA++LL L++L I + +GH + + + A+AS++ P
Sbjct: 306 YAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVASLNTP 359
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLV-DDYRVVLYDNMGAG-TTNPD--YFDFNRYST 69
GSG+ V+ L HG T +W++++P++V YR V D +G G + PD Y + +
Sbjct: 27 GSGQPVLFL-HGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDSAKPDIEYRLQDHVAY 85
Query: 70 LEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPD 110
+G+ ++ L +D +LV H ++IG + PD
Sbjct: 86 XDGF-------IDALGLDDXVLVIHDWGSVIGXRHARLNPD 119
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 20 IVLAHGFGTDQ---SVWKHLVPHLVDDYRVVLYDNMGAGTTN-PDYFDFNRYSTLEGYAL 75
+VL HG G S W+ ++P L +++ VV D +G G + P+ + + S +
Sbjct: 32 VVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMRVE 91
Query: 76 DLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS--GSP 122
+L ++ I+ +VG+S+ + + P+ F K+ ++ G+P
Sbjct: 92 QILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAP 140
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 17 EQVIVLAHGFGTDQSVWKHL---VPHLVDDYRVVLYDNMGAGTTNP--DYFDFNRYSTLE 71
+Q +VL HG G + W + + L + V+ D G G ++ ++ FNRY+
Sbjct: 56 DQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYA--- 112
Query: 72 GYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
A+ L + ++L + LVG+S+ ++ P +LV++
Sbjct: 113 --AMALKGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMG 158
>pdb|2WM2|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
pdb|2WM2|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a In Complex With Chloride
Length = 279
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 19 VIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLL 78
I+L G+ D V+K+L+ L D+RV++ + G G + + DF ++ D L
Sbjct: 32 AILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVK----DAL 87
Query: 79 AILEELQIDSCILVGHSVSAMI 100
IL++L +++ + V HS +
Sbjct: 88 EILDQLGVETFLPVSHSHGGWV 109
>pdb|2WJ3|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ3|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a
pdb|2WJ4|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ4|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Anaerobically Complexed With Its
Natural Substrate 1-H-3-Hydroxy-4-Oxoquinaldine
pdb|2WJ6|A Chain A, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|B Chain B, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|C Chain C, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
pdb|2WJ6|D Chain D, Crystal Structure Of The Cofactor-Devoid 1-H-3-Hydroxy-4-
Oxoquinaldine 2,4-Dioxygenase (Hod) From Arthrobacter
Nitroguajacolicus Ru61a Complexed With Its Natural
Product N-Acetylanthranilate
Length = 276
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 19 VIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLL 78
I+L G+ D V+K+L+ L D+RV++ + G G + + DF ++ D L
Sbjct: 29 AILLLPGWCHDHRVYKYLIQELDADFRVIVPNWRGHGLSPSEVPDFGYQEQVK----DAL 84
Query: 79 AILEELQIDSCILVGHSVSAMI 100
IL++L +++ + V HS +
Sbjct: 85 EILDQLGVETFLPVSHSHGGWV 106
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 11 KVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYST 69
K TG+ + +I ++HG G ++ L L D V +D++G G + + + +
Sbjct: 53 KPTGTPKALIFVSHGAGEHSGRYEELARXLXGLDLLVFAHDHVGHGQSEGERXVVSDFHV 112
Query: 70 LEGYALDLLAILEELQID----SCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
+ D+L ++ Q D L+GHS I + + RP F V+IS
Sbjct: 113 ---FVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLIS 163
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 17 EQVIVLAHGFGTDQSVWKHL---VPHLVDDYRVVLYDNMGAGTTNP--DYFDFNRYSTLE 71
+Q +VL HG G + W + + L + V+ D G G ++ ++ FNRY+
Sbjct: 36 DQTVVLLHGGGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYA--- 92
Query: 72 GYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMIS 119
A+ L + ++L + LVG+++ ++ P +LV++
Sbjct: 93 --AMALKGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMG 138
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 12 VTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP 59
V G +++L HGFG W L+P L + V+ D G G + P
Sbjct: 25 VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEP 72
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 12 VTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP 59
V G +++L HGFG W L+P L + V+ D G G + P
Sbjct: 25 VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEP 72
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 12 VTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP 59
V G +++L HGFG W L+P L + V+ D G G + P
Sbjct: 25 VKGGQGPLVMLVHGFGQTWYEWHQLMPELAKRFTVIAPDLPGLGQSEP 72
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 20/132 (15%)
Query: 20 IVLAHG-FGTDQSVWKHLVPHLVDDYRVVLYD--NMGAGTTNPDYFDFNRYSTLEGYALD 76
IVL HG FG+ ++ L LV+D+ ++ D N G P A D
Sbjct: 19 IVLVHGLFGSLDNL-GVLARDLVNDHNIIQVDVRNHGLSPREP-------VMNYPAMAQD 70
Query: 77 LLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDVDYYGGFEQ 136
L+ L+ QID +GHS+ + PD KLV I +P VDY+
Sbjct: 71 LVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP-----VDYH----V 121
Query: 137 EELDQLFEAMRS 148
D++F A+ +
Sbjct: 122 RRHDEIFAAINA 133
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN------PDYFDFNRY 67
G G+ IV HG T +W++++PHL R+V D +G G ++ PD + +
Sbjct: 28 GKGD-AIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGEQ 86
Query: 68 STLEGYALDLLAILEELQI-DSCILVGHSVSAMIG 101
L A+ + L + D +LV H + +G
Sbjct: 87 RDF------LFALWDALDLGDHVVLVLHDWGSALG 115
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTN------PDYFDFNRY 67
G G+ IV HG T +W++++PHL R+V D +G G ++ PD + +
Sbjct: 26 GKGD-AIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGEQ 84
Query: 68 STLEGYALDLLAILEELQI-DSCILVGHSVSAMIG 101
L A+ + L + D +LV H + +G
Sbjct: 85 RDF------LFALWDALDLGDHVVLVLHDWGSALG 113
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 44 YRVVL--YDNMGAGTTNPDYFDFNRYS--------TLEGYALDLLAILEELQIDSCILVG 93
YR +L + G PD F F R T + LLA L+ LQ++ LV
Sbjct: 62 YRKMLPVFTAAGGRVVAPDLFGFGRSDKPTDDAVYTFGFHRRSLLAFLDALQLERVTLVC 121
Query: 94 HSVSAMIGAIASISRPDLFTKLVMIS 119
++G + RP L +L++++
Sbjct: 122 QDWGGILGLTLPVDRPQLVDRLIVMN 147
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 35/236 (14%)
Query: 33 WKHLVPHLVDDYRVVLYDNMGAG-TTNPD--YFDFNRYSTLEGYALDLLAILEELQIDSC 89
W++++P L YRV+ D +G G T PD Y R L + ++ + D
Sbjct: 55 WRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDF-------IKAMNFDGK 107
Query: 90 I-LVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLNDVDYYGGFEQEELDQLFEAMRS 148
+ +VG+S+ G S+ +L LV++ GS + ++ E+L +
Sbjct: 108 VSIVGNSMGGATGLGVSVLHSELVNALVLM-GSAGLVVEI-------HEDLRPII----- 154
Query: 149 NYKAWCSGFAPLAVGGDMDSVAVQE-FSRTLFNMRPDIALSVAQTIFQSDMRQILGL--- 204
NY G L D + + + + D A A +R+ GL
Sbjct: 155 NYDFTREGMVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYD 214
Query: 205 ------VSVPCHIIQSVKDLAVPVVISEYLHQNLLVDSVVEVMSSDGHLPQLSSPD 254
V VP ++Q D VPV + Y +L+ DS ++ GH + P+
Sbjct: 215 PEFIRKVQVPTLVVQGKDDKVVPVETA-YKFLDLIDDSWGYIIPHCGHWAMIEHPE 269
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 13 TGSGEQVIVLAHGFGTDQSVW----KHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
G+GE VI+L HG G W +++ P + YRV+L D+ G ++ D R
Sbjct: 30 AGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR-G 87
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMI 118
+ A+ +++ L ID LVG+S+ ++ PD KL+++
Sbjct: 88 LVNARAVK--GLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILM 135
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 13 TGSGEQVIVLAHGFGTDQSVW----KHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
G+GE VI+L HG G W +++ P + YRV+L D+ G ++ D R
Sbjct: 30 AGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR-G 87
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMI 118
+ A+ +++ L ID LVG+S+ ++ PD KL+++
Sbjct: 88 LVNARAVK--GLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILM 135
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 23/147 (15%)
Query: 11 KVTGSGEQVIVL-AHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT-NPD----YFDF 64
+ TG+ + +VL HG T +W++++P + + D +G G + PD +FD
Sbjct: 22 RETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDH 81
Query: 65 NRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRY 124
RY L A +E+ + S LV + + RPD L + +
Sbjct: 82 VRY---------LDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFME----F 128
Query: 125 LNDVDYYGGFEQEELDQLFEAMRSNYK 151
+ + + F Q+ EA R+ ++
Sbjct: 129 IRPMPTWQDFHQDHA----EAARAVFR 151
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 13 TGSGEQVIVLAHGFGTDQSVW----KHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
G+GE VI+L HG G W +++ P + YRV+L D+ G ++ D R
Sbjct: 30 AGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR-G 87
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMI 118
+ A+ +++ L ID LVG+++ ++ PD KL+++
Sbjct: 88 LVNARAVK--GLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILM 135
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 13 TGSGEQVIVLAHGFGTDQSVW----KHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
G+GE VI+L HG G W +++ P + YRV+L D+ G ++ D R
Sbjct: 30 AGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR-G 87
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMI 118
+ A+ +++ L ID LVG+++ ++ PD KL+++
Sbjct: 88 LVNARAVK--GLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILM 135
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 13 TGSGEQVIVLAHGFGTDQSVW----KHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
G+GE VI+L HG G W +++ P + YRV+L D+ G ++ D R
Sbjct: 27 AGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR-G 84
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMI 118
+ A+ +++ L ID LVG+++ ++ PD KL+++
Sbjct: 85 LVNARAVK--GLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILM 132
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 13 TGSGEQVIVLAHGFGTDQSVW----KHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYS 68
G+GE VI+L HG G W +++ P + YRV+L D+ G ++ D R
Sbjct: 30 AGNGETVIML-HGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAVVMDEQR-G 87
Query: 69 TLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMI 118
+ A+ +++ L ID LVG+++ ++ PD KL+++
Sbjct: 88 LVNARAVK--GLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILM 135
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 11 KVTGSGEQVIVL-AHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT-NPD----YFDF 64
+ TG+ + +VL HG T +W++++P + + D +G G + PD +FD
Sbjct: 22 RETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDH 81
Query: 65 NRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMI 118
RY L A +E+ + S LV + + RPD L +
Sbjct: 82 VRY---------LDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFM 126
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 11 KVTGSGEQVIVL-AHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT-NPD----YFDF 64
+ TG+ + +VL HG T +W++++P + + D +G G + PD +FD
Sbjct: 22 RETGAQDAPVVLFLHGNPTSSHIWRNILPLVSPVAHCIAPDLIGFGQSGKPDIAYRFFDH 81
Query: 65 NRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMI 118
RY L A +E+ + S LV + + RPD L +
Sbjct: 82 VRY---------LDAFIEQRGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFM 126
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Query: 20 IVLAHGFGTDQSVWKHLVPHLV-----DDY---RVVLYDNMGAGTT---NPDYFDFNRYS 68
+V HG G + VW++ +P LV +Y +V+L D + G + N N ++
Sbjct: 55 LVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSAVRNRGRLGTN-FN 113
Query: 69 TLEGYALDLLAI--LEELQIDS----CILVGHSVSAMIGAIASISRPDLFTKLVMI 118
++G A D+L I E IDS +++GHS+ + +P+LF L++I
Sbjct: 114 WIDG-ARDVLKIATXELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILI 168
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP-DYFDFNRYSTLEG 72
G+G+ I+ HG T +W++++PH R++ D +G G ++ D RY+ E
Sbjct: 26 GTGDP-ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAE- 83
Query: 73 YALDLLAILEELQI-DSCILVGHSVSAMIG 101
+ L A+ E L + D +LV H + +G
Sbjct: 84 HRDYLDALWEALDLGDRVVLVVHDWGSALG 113
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP-DYFDFNRYSTLEG 72
G+G+ I+ HG T +W++++PH R++ D +G G ++ D RY+ E
Sbjct: 27 GTGDP-ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAE- 84
Query: 73 YALDLLAILEELQI-DSCILVGHSVSAMIG 101
+ L A+ E L + D +LV H + +G
Sbjct: 85 HRDYLDALWEALDLGDRVVLVVHDWGSALG 114
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP-DYFDFNRYSTLEG 72
G+G+ I+ HG T +W++++PH R++ D +G G ++ D RY+ E
Sbjct: 27 GTGDP-ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAE- 84
Query: 73 YALDLLAILEELQI-DSCILVGHSVSAMIG 101
+ L A+ E L + D +LV H + +G
Sbjct: 85 HRDYLDALWEALDLGDRVVLVVHDWGSALG 114
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 14 GSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNP-DYFDFNRYSTLEG 72
G+G+ I+ HG T +W++++PH R++ D +G G ++ D RY+ E
Sbjct: 27 GTGDP-ILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAE- 84
Query: 73 YALDLLAILEELQI-DSCILVGHSVSAMIG 101
+ L A+ E L + D +LV H + +G
Sbjct: 85 HRDYLDALWEALDLGDRVVLVVHDWGSALG 114
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 44 YRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLLAILEELQ----IDSCILVGHSVSAM 99
YR+VL+D G+G + P ++ DL+A +E L+ +D + G S +
Sbjct: 61 YRIVLFDQRGSGRSTP------HADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGST 114
Query: 100 IGAIASISRPDLFTKLVM 117
+ + + P T+LV+
Sbjct: 115 LALAYAQTHPQQVTELVL 132
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 46 VVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIAS 105
V+ YD+ G + F + Y E A D +A+L+ +D +VG S+ A I + +
Sbjct: 54 VIRYDHRDTGRSTTRDFAAHPYGFGE-LAADAVAVLDGWGVDRAHVVGLSMGATITQVIA 112
Query: 106 ISRPDLFTKLVMISGSPRYLNDVDYYGGFEQ 136
+ D + L M+ G D+D+ E+
Sbjct: 113 LDHHDRLSSLTMLLGGGL---DIDFDANIER 140
>pdb|3IBT|A Chain A, Structure Of 1h-3-Hydroxy-4-Oxoquinoline 2,4-Dioxygenase
(Qdo)
Length = 264
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 19 VIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLL 78
+ L G+ D ++K+L P L D+ V+ D G D DF+ + A DLL
Sbjct: 23 TLFLLSGWCQDHRLFKNLAPLLARDFHVICPDWRGHDAKQTDSGDFDS----QTLAQDLL 78
Query: 79 AILE 82
A ++
Sbjct: 79 AFID 82
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 15 SGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTT-----NPDYFDFNRYST 69
G + VL G G + V + + ++ +RVV +D G+G + +P F T
Sbjct: 24 EGPALFVLHGGPGGNAYVLREGLQDYLEGFRVVYFDQRGSGRSLELPQDPRLF------T 77
Query: 70 LEGYALDLLAILEELQIDSCILVGHSVSAMI 100
++ D L + E L ++ L+ H A++
Sbjct: 78 VDALVEDTLLLAEALGVERFGLLAHGFGAVV 108
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 40 LVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAM 99
D Y V L + G G ++ D + YS E DL AI E L I+ GHS
Sbjct: 46 FTDHYSVYLVNLKGCGNSDSAKND-SEYSXTETIK-DLEAIREALYINKWGFAGHSAGGX 103
Query: 100 IGAIASISRPDLFTKLVM 117
+ + + + TK+++
Sbjct: 104 LALVYATEAQESLTKIIV 121
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 21 VLAHGFGTDQ--SVWKHLVPHLVDDY-RVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDL 77
++ HGF ++ S+ + + L D+ V +D G G ++ + + + +E D
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNEIE----DA 105
Query: 78 LAILEELQIDSCI----LVGHSVSAMIGAIASISRPDLFTKLVMIS 119
AIL ++ D + LVGHS ++ ++ + PDL K+V+++
Sbjct: 106 NAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLA 151
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 27/124 (21%)
Query: 89 CILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRY--LNDVDYY----GGFEQEELDQL 142
C+L G S M ++ K V +S R ND+D GG QEE
Sbjct: 208 CVLAGFRCSVM----------NIINKAVAVSQKARSGGWNDLDMLEVGNGGMNQEEY--- 254
Query: 143 FEAMRSNYKAWCSGFAPLAVGGDMDSV--AVQE--FSRTLFNMRPDIALSVAQTIFQSDM 198
R +Y W + +PL +G D+ ++ +E ++ + + D + S A I+
Sbjct: 255 ----RVHYTIWAALKSPLILGNDVTNITNTTKEIIMNKEVIAVNQDSSFSPANRIWVKGD 310
Query: 199 RQIL 202
+Q+
Sbjct: 311 QQLF 314
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 12 VTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLE 71
VT S + I L HG+ W L ++Y + Y+ PDY F R ++ E
Sbjct: 22 VTDSNRRSIALFHGYSFTSXDWDK--ADLFNNYSKIGYN-----VYAPDYPGFGRSASSE 74
Query: 72 GYALD 76
Y +D
Sbjct: 75 KYGID 79
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 21 VLAHGFGTDQ--SVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDL 77
++ HGF ++ S+ + + L D + V +D G G ++ + + + +E D
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNEIE----DA 105
Query: 78 LAILEELQIDSCI----LVGHSVSAMIGAIASISRPDLFTKLVMIS 119
AIL ++ D + LVGH+ ++ ++ + PDL K+V+++
Sbjct: 106 NAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLA 151
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 21 VLAHGFGTDQ--SVWKHLVPHLVD-DYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDL 77
++ HGF ++ S+ + + L D + V +D G G ++ + + + +E D
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNEIE----DA 105
Query: 78 LAILEELQIDSCI----LVGHSVSAMIGAIASISRPDLFTKLVMIS 119
AIL ++ D + LVGH+ ++ ++ + PDL K+V+++
Sbjct: 106 NAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLA 151
>pdb|1GXL|A Chain A, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|B Chain B, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|C Chain C, Smc Hinge Domain From T. Maritima With Coiled Coil
pdb|1GXL|D Chain D, Smc Hinge Domain From T. Maritima With Coiled Coil
Length = 213
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 64 FNRYSTLE------GYALDLLAILEELQIDSCILVGHS--VSAMIGAIASISRPDLFTKL 115
FNR S LE GYA+DL+ +L++ L G+S V + AI + L T++
Sbjct: 108 FNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRI 167
Query: 116 VMISGS 121
+ G
Sbjct: 168 ATLDGE 173
>pdb|1GXJ|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXJ|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL
pdb|1GXK|A Chain A, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|B Chain B, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|C Chain C, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
pdb|1GXK|D Chain D, Smc Hinge Domain From T. Maritima WO COILED COIL, P212121
Crystal Form
Length = 186
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 64 FNRYSTLE------GYALDLLAILEELQIDSCILVGHS--VSAMIGAIASISRPDLFTKL 115
FNR S LE GYA+DL+ +L++ L G+S V + AI + L T++
Sbjct: 96 FNRISGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRI 155
Query: 116 VMISG 120
+ G
Sbjct: 156 ATLDG 160
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 198 MRQILGLVSVPCH--IIQSVKDLAVPVVISEYLHQNLLVDSVVEV 240
M+++ LV+ P H IQ +KD + V+ EY ++ LV+ V +V
Sbjct: 1 MKRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDV 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,766,420
Number of Sequences: 62578
Number of extensions: 320877
Number of successful extensions: 849
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 116
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)