BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046599
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/109 (77%), Positives = 96/109 (88%), Gaps = 5/109 (4%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M+RVYVGNLD RV+ R++EDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DAIR+LDG
Sbjct: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60
Query: 61 KNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLR 109
KNGWRVELS + G G GR RSGGSD+KCYECGEPGHFARECRLR
Sbjct: 61 KNGWRVELSTKA-----GSGRGRDRSGGSDMKCYECGEPGHFARECRLR 104
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/142 (68%), Positives = 112/142 (78%), Gaps = 16/142 (11%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M+R+YVGNLD RV+ +LEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDA+DA+R+LDG
Sbjct: 1 MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60
Query: 61 KNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSG------- 113
KNGWRVELS NS GGR R GGS++KCYECGE GHFARECRLR G G
Sbjct: 61 KNGWRVELSRNS-----SSRGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGLGSGKR 115
Query: 114 ----RRRSRSPRYRRSPSYGRR 131
R RSRSP+YR+SP+YGRR
Sbjct: 116 RSRSRSRSRSPQYRKSPTYGRR 137
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/109 (76%), Positives = 93/109 (85%), Gaps = 4/109 (3%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M+RVYVGNLD RV+ R+LEDEFRVFGV+RSVWVAR+PPG+AFIDFDD RDAQDAIR++DG
Sbjct: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60
Query: 61 KNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLR 109
KNGWRVELS N+ G GGR R G S+ KCYECGE GHFARECRLR
Sbjct: 61 KNGWRVELSRNASSG----RGGRDRYGSSESKCYECGETGHFARECRLR 105
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana
GN=RSZ22 PE=1 SV=1
Length = 200
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/144 (75%), Positives = 116/144 (80%), Gaps = 13/144 (9%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
MSRVYVGNLD RV+ER+LEDEFR FGV+RSVWVARRPPGYAF+DF+D RDA+DAIR LDG
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 61 KNGWRVELSHN--------SRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGS 112
KNGWRVE SHN G GG GGGRG GGSDLKCYECGE GHFARECR RGG+
Sbjct: 61 KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120
Query: 113 GRRRSR-----SPRYRRSPSYGRR 131
GRRRS+ PRYRRSPSYGRR
Sbjct: 121 GRRRSKSRSRTPPRYRRSPSYGRR 144
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana
GN=RSZ22A PE=1 SV=1
Length = 196
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 106/140 (75%), Gaps = 11/140 (7%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
MSRVYVGNLD RV+ER+LEDEFR FGVIRSVWVARRPPGYAF+DF+D RDA+DAIRE+DG
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 61 KNGWRVELSHN-----SRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC------RLR 109
KNGWRVE SHN RGGG G G G GGSDLKCYECGE GHFAREC R
Sbjct: 61 KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGSGGR 120
Query: 110 GGSGRRRSRSPRYRRSPSYG 129
S R PRYR+SP+YG
Sbjct: 121 RRSRSRSRSPPRYRKSPTYG 140
>sp|O81127|RZP21_ARATH Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana
GN=RSZ21 PE=1 SV=1
Length = 187
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/106 (73%), Positives = 87/106 (82%), Gaps = 2/106 (1%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M+RVYVGNLD RV+ER+LEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI LD
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60
Query: 61 KNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
KNGWRVELSH +GG GG GG RG D KCYECGE GHFAREC
Sbjct: 61 KNGWRVELSHKDKGGRGGGGGRRGGI--EDSKCYECGELGHFAREC 104
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
++VYVGNL + + +LE F +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 62 ----NGWRVELSHN-SRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
+ RVELS R R R R + +CYECGE GH+A +C
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDRPPAR-RPFDPNDRCYECGEKGHYAYDC 119
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2
SV=1
Length = 235
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
++VYVGNL + + +LE F +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 62 ----NGWRVELSHN-SRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
+ RVELS R R R R + +CYECGE GH+A +C
Sbjct: 71 VICGSRVRVELSTGMPRRSRFDRPPAR-RPFDPNDRCYECGEKGHYAYDC 119
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
++VYVGNL + + +LE F +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK
Sbjct: 40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 62 ----NGWRVELSHN-SRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
+ RVELS R R R R + +CYECGE GH+A +C
Sbjct: 100 VICGSRVRVELSTGMPRRSRFDRPPAR-RPFDPNDRCYECGEKGHYAYDC 148
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62
+VYVGNL + ++ +LE F +G +RSVWVAR PPG+AF++F+D RDA DA+RELDG+
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 63 GW----RVELSH 70
RVELS+
Sbjct: 71 LCGCRVRVELSN 82
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62
+VYVGNL + ++ +LE F +G +RSVWVAR PPG+AF++F+D RDA DA+RELDG+
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 63 GW----RVELSH 70
RVELS+
Sbjct: 71 LCGCRVRVELSN 82
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62
+VYVGNL + ++ +LE F +G +RSVWVAR PPG+AF++F+D RDA DA+RELDG+
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 63 GW----RVELSH 70
RVELS+
Sbjct: 71 LCGCRVRVELSN 82
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 52/72 (72%), Gaps = 4/72 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
++VYVG L S + ++LE+ F FG IR VWVARRPPG+AF+++DD RDA+DA+R LDG
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 62 NGW----RVELS 69
RVELS
Sbjct: 63 RICGVRARVELS 74
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 45/59 (76%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
+VYVGNL S S+ ++E F +G +R+VWVAR PPG+AF++F+D RDA+DA R LDG
Sbjct: 12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGT 70
>sp|Q24491|RX21_DROME RNA-binding protein Rsf1 OS=Drosophila melanogaster GN=Rsf1 PE=1
SV=1
Length = 197
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
+RVYVGNL +V + DLE EF +G + SVW+A PPG+AF++F+ DA+ A L+G
Sbjct: 7 TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGS 66
Query: 62 ----NGWRVELS 69
+ RVE+S
Sbjct: 67 ELLGSQLRVEIS 78
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana
GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 63/109 (57%), Gaps = 9/109 (8%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
+R+YVG L SR RDLE F +G +R V + R YAF++F D RDA DA LDG+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFSDPRDADDARYYLDGR 67
Query: 62 --NGWRVELSHNSRGG--GGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
+G R+ + SRG G G RG GS +C+ CG GH+AR+C
Sbjct: 68 DFDGSRITV-EASRGAPRGSRDNGSRGPPPGSG-RCFNCGVDGHWARDC 114
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 4 VYVGNLDSRVSERDLEDEFRVFGVIRSV--WVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
VYVGNL + ER++ED F +G + + V RPPGYAF++FDD RDA+DAI DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 62 NG----WRVELSHNSR 73
+ RVEL+H R
Sbjct: 69 DFDGHRLRVELAHGGR 84
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1
OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
+R+Y+G L SRVSE+D+E FR +G IR V + G+ F++FDD RDA+DA+ +L+GK
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN---GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 62 N--GWRVELSHN 71
G RV L ++
Sbjct: 60 ELGGERVILDYS 71
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK- 61
RV V NL SR+S +DL+D+ R GV + A + P A + F D + I + DG
Sbjct: 130 RVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEALLCFATPSDLKRCIEKCDGMD 189
Query: 62 -NGWRVELSHNSRGG 75
NG ++++ +S+ G
Sbjct: 190 LNGRKIKMIDDSQAG 204
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 7/108 (6%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
+R+YVG L SR RDLE F +G +R V + R YAF++F D RDA DA LDG+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR---DYAFVEFGDPRDADDARHYLDGR 67
Query: 62 --NGWRVELSHNSRGGGGGRG-GGRGRSGGSDLKCYECGEPGHFAREC 106
+G R+ + + G R RG G+ +C+ CG GH+AR+C
Sbjct: 68 DFDGSRITVEFSRGAPRGSRDFDSRGPPPGAG-RCFNCGVDGHWARDC 114
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M RVY+G L + ERD+E F+ +G I V + GY F++FDD RDA DA+ EL+G
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVYELNG 57
Query: 61 KN--GWRVELSHNSRGGGGGRGGGRGRSG 87
K+ G RV + H +RG G GRSG
Sbjct: 58 KDLCGERVIVEH-ARGPRRDGSYGSGRSG 85
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK- 61
R+ V NL SR S +DL+D R G + + I+F Y D + A+ +LDG
Sbjct: 105 RLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTE 164
Query: 62 -NGWRVELSHNSRG 74
NG ++ L + G
Sbjct: 165 VNGRKIRLVEDKPG 178
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M RVY+G L + ERD+E F+ +G I V + GY F++FDD RDA DA+ EL+G
Sbjct: 1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVYELNG 57
Query: 61 KN--GWRVELSH 70
K+ G RV + H
Sbjct: 58 KDLCGERVIVEH 69
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK- 61
R+ V NL SR S +DL+D R G + + I+F Y D + A+ +LDG
Sbjct: 105 RLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTE 164
Query: 62 -NGWRVEL 68
NG ++ L
Sbjct: 165 VNGRKIRL 172
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2
OS=Caenorhabditis elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 13/90 (14%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M RVY+G L +R S+RD+E FR +G + V + G+ F+DF D RDA DA+ +L+G
Sbjct: 1 MVRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKN---GFGFVDFQDQRDADDAVHDLNG 57
Query: 61 KN--GWRVELS--------HNSRGGGGGRG 80
K G RV L + R G G RG
Sbjct: 58 KELCGERVILEFPRRKVGYNEERSGSGFRG 87
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVA-RRPPGYAFIDFDDYRDAQDAIRELDGK 61
R+ + NL +R S +D++D R G+ + A +R A + F + D +DA+ +L G+
Sbjct: 113 RLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGE 172
Query: 62 --NGWRVELSHNSR 73
NG +++ + +R
Sbjct: 173 DLNGRKLKCTDETR 186
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
SRVYVG L V ERDLE F+ +G R + + GY F++F+DYRDA DA+ EL+GK
Sbjct: 4 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKN---GYGFVEFEDYRDADDAVYELNGK 60
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK- 61
R+ V NL SRVS +DL+D R G + ++ ++F D + AI +LD
Sbjct: 121 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTE 180
Query: 62 -NGWRVEL 68
NG R+ L
Sbjct: 181 LNGRRIHL 188
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 16/117 (13%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
++++VGNL + ++ + F+ +G + + R Y F+ D D QDAI+EL+G+
Sbjct: 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVR---NYGFVHLDCVGDVQDAIKELNGR 142
Query: 62 ----NGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC-RLRGGSG 113
+V++S + G G +CY CG GH+++EC RL G +G
Sbjct: 143 VVDGQPLKVQVSTSRVRPKPGMGDPE--------QCYRCGRSGHWSKECPRLYGSAG 191
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
++++GNLD + +L F +G + V + Y F+ + + +DAI+ L+G
Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVK---NYGFVHMETEQQGRDAIQNLNG 62
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3
OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-RPPGYAFIDFDDYRDAQDAIRELDG 60
+VYVGNL V E+++ED F +G I+ V + R P +AF++F+D+RDA+DA+R DG
Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWV-----ARRPPGYAFIDFDDYRDAQDAIR 56
S VYV NL ++ DL F +G + V + RR G AFI F D AQ+ R
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTR 69
Query: 57 ELDGKNGW-RVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
++ K + RV + + G R R+ KCYECGE GH + C
Sbjct: 70 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWV-----ARRPPGYAFIDFDDYRDAQDAIR 56
S VYV NL ++ DL F +G + V + R+ G AFI F D AQ+ R
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 69
Query: 57 ELDGKNGW-RVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
++ K + RV + + G R R+ KCYECGE GH + C
Sbjct: 70 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRP--PGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL S V E+DLED F +G IR + + R +AF+ F+D RDA+DAI G
Sbjct: 16 RIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIY---G 72
Query: 61 KNGW-------RVELSHNSRGGGGGRGGGR 83
+NG+ RVE G GG G R
Sbjct: 73 RNGYDYGQCRLRVEFPRTYGGRGGWPRGAR 102
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWV-----ARRPPGYAFIDFDDYRDAQDAIR 56
S VYV NL ++ DL F +G + V + +R+ G +F+ F D AQ+ +R
Sbjct: 10 STVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCVR 69
Query: 57 ELDGKNGW-RVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
L+ K + R + ++ G R R+ +CYECG+ GH + C
Sbjct: 70 GLNNKQLFGRAIKASIAKDNGRATEFIRRRNYTDKSRCYECGDTGHLSYAC 120
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRP--PGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + V E+DLED F +G IR + + R +AF+ F+D RDA+DAI +G
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
Query: 61 KNGWRVELSHNSRGGGGGRGG 81
+ + L GGRGG
Sbjct: 75 YDYGQCRLRVEFPRAYGGRGG 95
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M R+Y+G + ERD+E + +G I ++ + G+AF+DF+D RDA+DA +LDG
Sbjct: 1 MPRLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDG 57
Query: 61 KN 62
K
Sbjct: 58 KT 59
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + +D+ED F +G IR + + R P +AF++F+D RDA+DA+ DG
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75
Query: 61 --KNGWRVEL 68
+G+R+ +
Sbjct: 76 YDYDGYRLRV 85
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62
RV++G L+ E+D+E F+ +G IR + + R G+ F++F+D RDA DA+ ELDGK
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 63 --GWRVELSH 70
RV + H
Sbjct: 62 LCSERVTIEH 71
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
+R+ V NL SRVS +DL+D R G + R ++F Y D ++AI +L GK
Sbjct: 108 NRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGK 167
Query: 62 --NGWRVEL 68
NG +++L
Sbjct: 168 EINGRKIKL 176
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62
RV++G L+ E+D+E F+ +G IR + + R G+ F++F+D RDA DA+ ELDGK
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 63 --GWRVELSH 70
RV + H
Sbjct: 62 LCSERVTIEH 71
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
+R+ V NL SRVS +DL+D R G + R ++F Y D ++AI +L GK
Sbjct: 108 NRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGK 167
Query: 62 --NGWRVEL 68
NG +++L
Sbjct: 168 EINGRKIKL 176
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62
RV++G L+ E+D+E F+ +G IR + + R G+ F++F+D RDA DA+ ELDGK
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 63 --GWRVELSH 70
RV + H
Sbjct: 62 LCSERVTIEH 71
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
+R+ V NL SRVS +DL+D R G + R ++F Y D ++AI +L GK
Sbjct: 108 NRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGK 167
Query: 62 --NGWRVEL 68
NG +++L
Sbjct: 168 EINGRKIKL 176
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + +D+ED F +G IR + + R P +AF++F+D RDA+DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRP--PGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + V E+DLED F +G IR + + R +AF+ F+D RDA+DAI G
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIY---G 71
Query: 61 KNGW 64
+NG+
Sbjct: 72 RNGY 75
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + +D+ED F +G IR + + R P +AF++F+D RDA+DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVEL 68
+G+R+ +
Sbjct: 77 YDYDGYRLRV 86
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + +D+ED F +G IR + + R P +AF++F+D RDA+DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1
PE=2 SV=3
Length = 248
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + +D+ED F +G IR + + R P +AF++F+D RDA+DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + +D+ED F +G IR + + R P +AF++F+D RDA+DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + +D+ED F +G IR + + R P +AF++F+D RDA+DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1
PE=2 SV=1
Length = 248
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + +D+ED F +G IR + + R P +AF++F+D RDA+DA+ DG
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 77 YDYDGYRLRVE 87
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWV-----ARRPPGYAFIDFDDYRDAQDAIR 56
S VYV NL ++ DL F +G + V + R+ G AFI F D A + R
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTR 69
Query: 57 ELDGKNGW-RVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
++ K + RV + + G R R+ KCYECGE GH + C
Sbjct: 70 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWV-----ARRPPGYAFIDFDDYRDAQDAIR 56
S VYV NL ++ DL F +G + V + R+ G AFI F D A + R
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTR 69
Query: 57 ELDGKNGW-RVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
++ K + RV + + G R R+ KCYECGE GH + C
Sbjct: 70 AINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYAC 120
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M RVY+G L V E+D++ F +G + V + GY F++F+D RDA DA+ EL+G
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKN---GYGFVEFEDSRDADDAVYELNG 57
Query: 61 KN--GWRVELSH 70
K G RV + H
Sbjct: 58 KELCGERVIVEH 69
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK- 61
R+ V NL SR S +DL+D R G + + I+F Y D + A+ +LDG
Sbjct: 111 RLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTE 170
Query: 62 -NGWRVELSHN 71
NG + L +
Sbjct: 171 INGRNIRLIED 181
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDG 60
R+YVGNL + +D+ED F +G IR + + R P +AF++F+D RDA+DA+ DG
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75
Query: 61 --KNGWRVELS 69
+G+R+ +
Sbjct: 76 YDYDGYRLRVE 86
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6
PE=2 SV=1
Length = 345
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60
M RVY+G L V E+D++ F +G + + + GY F++F+D RDA DA+ EL+G
Sbjct: 1 MPRVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKN---GYGFVEFEDSRDADDAVYELNG 57
Query: 61 KN--GWRVELSH 70
K G RV + H
Sbjct: 58 KELCGERVIVEH 69
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK- 61
R+ V NL SR S +DL+D R G + + I+F Y D + A+ +LDG
Sbjct: 111 RLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTE 170
Query: 62 -NGWRVELSHN 71
NG + L +
Sbjct: 171 INGRNIRLIED 181
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRE 57
+++VG L+ E+ LED F FG I V V + R G+ FI F + A D +R
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 58 LDGK--NGWRVELSHNSRGGGGGRGG-----GRGRS 86
++G+ +G ++ + H + G RGG GRGRS
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGAFGAHGRGRS 102
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61
++++VGN+ + ++L +F +G + + + YAF+ + DA +AIR LD
Sbjct: 78 TKLHVGNISPTCTNKELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNT 134
Query: 62 NG----WRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRL 108
V+LS + G G G CY CG+ GH+++EC +
Sbjct: 135 EFQGKRMHVQLSTSRLRTAPGMGDQSG--------CYRCGKEGHWSKECPI 177
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIREL 58
M ++++GNL +E+++ F +G + + + Y F+ +D A+DAIR L
Sbjct: 1 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK---NYGFVHIEDKTAAEDAIRNL 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.143 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,582,879
Number of Sequences: 539616
Number of extensions: 3009125
Number of successful extensions: 33568
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 861
Number of HSP's that attempted gapping in prelim test: 22399
Number of HSP's gapped (non-prelim): 8537
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)