Query 046599
Match_columns 131
No_of_seqs 270 out of 2424
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 03:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beg_B Splicing factor, argini 99.8 4.3E-21 1.5E-25 120.0 8.6 59 2-62 17-75 (115)
2 4fxv_A ELAV-like protein 1; RN 99.8 1E-20 3.5E-25 115.4 8.8 71 2-72 20-97 (99)
3 3pgw_S U1-70K; protein-RNA com 99.8 9.4E-20 3.2E-24 136.7 14.6 71 2-72 103-182 (437)
4 3ex7_B RNA-binding protein 8A; 99.8 7.3E-20 2.5E-24 115.8 10.4 73 2-74 23-104 (126)
5 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.4E-20 1.5E-24 120.9 9.6 73 2-74 40-121 (156)
6 2lkz_A RNA-binding protein 5; 99.8 3E-20 1E-24 112.6 8.0 72 1-72 9-93 (95)
7 1x4a_A Splicing factor, argini 99.8 1.2E-19 4E-24 112.2 10.9 71 2-72 23-99 (109)
8 1x4c_A Splicing factor, argini 99.8 2.6E-19 8.8E-24 110.6 12.1 70 2-73 16-92 (108)
9 2dnz_A Probable RNA-binding pr 99.8 2.9E-19 9.9E-24 107.7 12.0 73 2-74 6-87 (95)
10 2dnq_A RNA-binding protein 4B; 99.8 1.9E-19 6.6E-24 107.6 11.1 70 2-74 9-82 (90)
11 2hvz_A Splicing factor, argini 99.8 1.4E-19 4.9E-24 110.3 10.3 72 2-73 1-76 (101)
12 2dgu_A Heterogeneous nuclear r 99.8 2.7E-19 9.1E-24 109.6 11.1 68 2-72 12-83 (103)
13 1x4d_A Matrin 3; structural ge 99.8 1E-19 3.4E-24 111.5 9.2 70 2-72 16-92 (102)
14 1x5s_A Cold-inducible RNA-bind 99.8 2.7E-19 9.2E-24 109.2 10.9 75 2-76 13-96 (102)
15 1sjq_A Polypyrimidine tract-bi 99.8 1.3E-19 4.4E-24 111.4 8.6 71 2-73 17-91 (105)
16 4f25_A Polyadenylate-binding p 99.8 1.4E-19 4.8E-24 113.1 8.9 71 2-72 6-81 (115)
17 2cph_A RNA binding motif prote 99.8 7.1E-19 2.4E-23 108.2 11.4 73 2-74 16-99 (107)
18 2dgs_A DAZ-associated protein 99.8 9.7E-19 3.3E-23 106.3 11.8 71 2-73 11-90 (99)
19 2d9p_A Polyadenylate-binding p 99.8 4.1E-19 1.4E-23 108.7 10.2 73 2-74 16-95 (103)
20 2dgt_A RNA-binding protein 30; 99.8 8.5E-19 2.9E-23 105.2 11.2 69 2-73 11-81 (92)
21 2cq3_A RNA-binding protein 9; 99.8 1.1E-18 3.7E-23 106.8 11.8 72 2-73 16-94 (103)
22 2dnm_A SRP46 splicing factor; 99.8 4.7E-19 1.6E-23 108.4 10.2 72 2-73 14-94 (103)
23 1wex_A Hypothetical protein (r 99.8 8.4E-19 2.9E-23 107.8 11.1 72 2-74 16-93 (104)
24 3s8s_A Histone-lysine N-methyl 99.8 3.3E-19 1.1E-23 110.7 9.3 70 2-71 7-83 (110)
25 1x5t_A Splicing factor 3B subu 99.8 4E-19 1.4E-23 107.3 9.4 71 2-72 6-86 (96)
26 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.5E-19 2.2E-23 107.8 10.5 71 2-72 16-93 (103)
27 1whw_A Hypothetical protein ri 99.8 1.1E-18 3.7E-23 106.0 11.4 72 2-73 9-87 (99)
28 1x5u_A Splicing factor 3B subu 99.8 6.7E-19 2.3E-23 108.0 10.5 72 2-73 16-96 (105)
29 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.7E-19 9.3E-24 109.2 8.7 72 2-73 13-91 (102)
30 2cq1_A PTB-like protein L; RRM 99.8 6.3E-19 2.1E-23 107.9 10.1 71 2-73 16-92 (101)
31 2dnp_A RNA-binding protein 14; 99.8 6.1E-19 2.1E-23 105.5 9.8 68 2-72 10-81 (90)
32 2cpf_A RNA binding motif prote 99.8 3.6E-19 1.2E-23 107.9 9.0 72 2-73 6-87 (98)
33 2dgx_A KIAA0430 protein; RRM d 99.8 5.5E-19 1.9E-23 107.0 9.7 72 2-73 10-89 (96)
34 2fy1_A RNA-binding motif prote 99.8 1.2E-18 4.2E-23 109.0 11.5 72 2-73 8-87 (116)
35 1wi8_A EIF-4B, eukaryotic tran 99.8 6.8E-19 2.3E-23 107.9 10.0 70 2-73 16-95 (104)
36 3r27_A HnRNP L, heterogeneous 99.8 7.7E-19 2.6E-23 107.0 10.0 69 2-71 22-94 (100)
37 2jvr_A Nucleolar protein 3; RN 99.8 1.9E-19 6.5E-24 111.9 7.3 70 2-71 29-102 (111)
38 2kvi_A Nuclear polyadenylated 99.8 7.2E-19 2.5E-23 106.4 9.7 71 2-75 11-86 (96)
39 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.9E-19 2.4E-23 104.4 9.1 70 2-71 7-85 (87)
40 2cpj_A Non-POU domain-containi 99.8 1.2E-18 4E-23 106.0 10.3 71 2-73 16-90 (99)
41 1why_A Hypothetical protein ri 99.8 1.3E-18 4.5E-23 105.3 10.4 70 2-72 18-93 (97)
42 1x4g_A Nucleolysin TIAR; struc 99.8 1E-18 3.6E-23 108.0 10.1 70 2-72 26-99 (109)
43 2cqd_A RNA-binding region cont 99.8 2.2E-18 7.6E-23 107.5 11.4 70 2-71 18-95 (116)
44 2wbr_A GW182, gawky, LD47780P; 99.8 6.5E-19 2.2E-23 104.4 8.3 67 2-69 8-76 (89)
45 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-18 5.4E-23 106.5 10.3 72 2-73 14-97 (106)
46 3md1_A Nuclear and cytoplasmic 99.8 1.4E-18 4.8E-23 102.2 9.6 70 2-71 2-78 (83)
47 2ad9_A Polypyrimidine tract-bi 99.8 1.1E-18 3.8E-23 109.6 9.5 71 2-73 32-108 (119)
48 2cq0_A Eukaryotic translation 99.8 1.3E-18 4.5E-23 106.4 9.7 72 2-73 16-94 (103)
49 2cpd_A Apobec-1 stimulating pr 99.8 3.6E-18 1.2E-22 103.8 11.6 70 2-74 16-89 (99)
50 2cqh_A IGF-II mRNA-binding pro 99.8 5.5E-19 1.9E-23 106.2 7.8 68 2-71 9-82 (93)
51 2dgo_A Cytotoxic granule-assoc 99.8 3.8E-18 1.3E-22 106.2 11.9 71 2-72 16-95 (115)
52 2cpz_A CUG triplet repeat RNA- 99.8 8.2E-19 2.8E-23 109.4 8.8 71 2-72 26-105 (115)
53 4a8x_A RNA-binding protein wit 99.8 1.4E-18 4.9E-23 103.1 9.4 70 2-71 5-84 (88)
54 1u6f_A Tcubp1, RNA-binding pro 99.8 1.9E-18 6.5E-23 111.0 10.7 72 2-73 43-121 (139)
55 1x4h_A RNA-binding protein 28; 99.8 1.8E-18 6.2E-23 107.0 10.1 72 2-73 16-100 (111)
56 1p27_B RNA-binding protein 8A; 99.8 1.6E-18 5.4E-23 106.5 9.7 72 2-73 24-104 (106)
57 2lxi_A RNA-binding protein 10; 99.8 3E-19 1E-23 107.2 6.3 72 2-73 2-82 (91)
58 1wf1_A RNA-binding protein RAL 99.8 1.1E-18 3.8E-23 108.0 9.0 67 2-71 28-99 (110)
59 2dgv_A HnRNP M, heterogeneous 99.8 1.2E-18 4.2E-23 104.4 8.9 71 2-72 9-86 (92)
60 2dnh_A Bruno-like 5, RNA bindi 99.8 2.5E-18 8.6E-23 105.4 10.0 72 2-73 16-98 (105)
61 2cpi_A CCR4-NOT transcription 99.8 6.3E-19 2.2E-23 109.4 7.4 72 2-73 16-100 (111)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.6E-18 5.5E-23 102.3 8.9 68 2-69 8-82 (85)
63 1x4f_A Matrin 3; structural ge 99.8 1E-18 3.6E-23 108.6 8.3 71 2-73 26-103 (112)
64 2do4_A Squamous cell carcinoma 99.8 2.5E-18 8.6E-23 104.6 9.9 72 2-73 18-95 (100)
65 3d2w_A TAR DNA-binding protein 99.8 2.9E-18 9.8E-23 102.6 9.8 69 2-74 12-84 (89)
66 1whx_A Hypothetical protein ri 99.8 2.5E-18 8.6E-23 106.8 9.9 70 2-72 11-84 (111)
67 3zzy_A Polypyrimidine tract-bi 99.8 1.7E-18 5.9E-23 110.1 9.3 70 2-71 29-105 (130)
68 2x1f_A MRNA 3'-END-processing 99.8 3.5E-18 1.2E-22 103.3 9.9 70 2-71 3-81 (96)
69 2i2y_A Fusion protein consists 99.8 2E-18 6.8E-23 112.3 9.3 71 2-72 74-148 (150)
70 1oo0_B CG8781-PA, drosophila Y 99.8 4E-18 1.4E-22 105.4 10.1 72 2-73 27-107 (110)
71 2e5j_A Methenyltetrahydrofolat 99.8 2.5E-18 8.5E-23 104.2 8.9 70 2-72 20-94 (97)
72 2do0_A HnRNP M, heterogeneous 99.8 8.5E-18 2.9E-22 104.5 11.5 70 2-71 16-91 (114)
73 2cpe_A RNA-binding protein EWS 99.8 4.3E-18 1.5E-22 105.7 9.8 72 2-73 16-102 (113)
74 1wf0_A TDP-43, TAR DNA-binding 99.8 9.7E-19 3.3E-23 104.2 6.6 70 2-75 6-79 (88)
75 2cqc_A Arginine/serine-rich sp 99.8 3.5E-18 1.2E-22 102.9 9.0 71 2-72 16-93 (95)
76 2xnq_A Nuclear polyadenylated 99.8 6.9E-18 2.4E-22 102.4 10.3 66 2-70 23-93 (97)
77 2div_A TRNA selenocysteine ass 99.8 1.5E-18 5.2E-23 105.4 7.3 61 2-62 10-76 (99)
78 2la4_A Nuclear and cytoplasmic 99.8 2.5E-18 8.6E-23 104.8 8.3 70 2-72 28-99 (101)
79 3p5t_L Cleavage and polyadenyl 99.8 4.9E-19 1.7E-23 106.0 4.9 70 2-71 2-82 (90)
80 2e5h_A Zinc finger CCHC-type a 99.8 5.6E-18 1.9E-22 101.8 9.6 69 2-70 17-92 (94)
81 3ns6_A Eukaryotic translation 99.8 9.6E-19 3.3E-23 106.7 6.2 69 2-70 7-91 (100)
82 1s79_A Lupus LA protein; RRM, 99.8 3.3E-18 1.1E-22 105.0 8.5 69 2-71 12-88 (103)
83 3ucg_A Polyadenylate-binding p 99.8 5.6E-18 1.9E-22 100.8 9.3 71 2-73 7-84 (89)
84 2jvo_A Nucleolar protein 3; nu 99.8 5.2E-18 1.8E-22 104.9 9.3 69 2-73 32-102 (108)
85 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.8E-18 1.3E-22 112.7 8.9 72 2-73 73-153 (165)
86 2ywk_A Putative RNA-binding pr 99.8 6.4E-18 2.2E-22 101.8 9.2 70 2-71 17-92 (95)
87 2cpx_A Hypothetical protein FL 99.8 4.9E-18 1.7E-22 105.7 8.9 73 2-74 26-107 (115)
88 2fc9_A NCL protein; structure 99.8 5.4E-18 1.8E-22 103.3 8.9 72 2-73 16-90 (101)
89 3ulh_A THO complex subunit 4; 99.8 4.8E-18 1.7E-22 104.5 8.8 68 2-69 30-105 (107)
90 2dng_A Eukaryotic translation 99.8 9.1E-18 3.1E-22 102.7 9.9 69 2-72 16-93 (103)
91 2dhg_A TRNA selenocysteine ass 99.8 5.3E-18 1.8E-22 103.8 8.7 70 2-71 10-89 (104)
92 2a3j_A U1 small nuclear ribonu 99.8 7E-18 2.4E-22 107.1 9.4 71 2-72 30-110 (127)
93 2kxn_B Transformer-2 protein h 99.8 4.1E-18 1.4E-22 108.5 8.4 70 2-71 47-125 (129)
94 2err_A Ataxin-2-binding protei 99.8 5.5E-18 1.9E-22 104.8 8.7 70 2-71 30-106 (109)
95 1x4b_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 104.5 9.7 72 2-74 28-106 (116)
96 2ki2_A SS-DNA binding protein 99.7 9.5E-19 3.2E-23 104.5 4.7 71 1-72 1-80 (90)
97 2la6_A RNA-binding protein FUS 99.7 8.7E-18 3E-22 102.0 9.0 68 2-69 14-98 (99)
98 2cq2_A Hypothetical protein LO 99.7 7.7E-18 2.6E-22 104.9 8.7 71 2-73 26-107 (114)
99 2ytc_A PRE-mRNA-splicing facto 99.7 6.7E-18 2.3E-22 99.7 8.1 60 2-62 13-73 (85)
100 2e5i_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 105.4 9.8 70 3-73 27-101 (124)
101 2fc8_A NCL protein; structure 99.7 8.3E-18 2.8E-22 102.6 8.5 71 2-72 16-92 (102)
102 1p1t_A Cleavage stimulation fa 99.7 5.3E-18 1.8E-22 103.7 7.6 71 2-72 9-88 (104)
103 2jrs_A RNA-binding protein 39; 99.7 8.5E-18 2.9E-22 103.9 8.5 70 2-71 27-105 (108)
104 2jwn_A Embryonic polyadenylate 99.7 9.2E-18 3.2E-22 105.8 8.9 71 2-73 37-114 (124)
105 2khc_A Testis-specific RNP-typ 99.7 7.1E-18 2.4E-22 105.5 8.1 61 2-62 41-106 (118)
106 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.7E-22 104.1 8.9 69 2-71 26-103 (114)
107 1fjc_A Nucleolin RBD2, protein 99.7 3.4E-18 1.2E-22 103.2 6.4 72 2-73 17-90 (96)
108 1wez_A HnRNP H', FTP-3, hetero 99.7 6E-18 2E-22 103.6 7.2 67 2-70 16-90 (102)
109 2dis_A Unnamed protein product 99.7 1.1E-17 3.7E-22 103.2 8.3 72 2-73 9-93 (109)
110 2kt5_A RNA and export factor-b 99.7 2.5E-17 8.5E-22 103.9 10.2 71 2-72 36-114 (124)
111 1sjr_A Polypyrimidine tract-bi 99.7 1.1E-17 3.8E-22 110.1 8.8 70 2-71 47-123 (164)
112 2cqp_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 103.2 6.3 69 2-70 16-93 (98)
113 1x4e_A RNA binding motif, sing 99.7 3.2E-18 1.1E-22 101.2 5.5 61 2-62 6-71 (85)
114 2krb_A Eukaryotic translation 99.7 4.7E-18 1.6E-22 99.7 6.2 61 2-62 2-71 (81)
115 1nu4_A U1A RNA binding domain; 99.7 1.2E-17 4E-22 101.0 8.1 70 2-71 9-88 (97)
116 3n9u_C Cleavage and polyadenyl 99.7 9E-18 3.1E-22 110.1 8.1 70 2-71 56-134 (156)
117 3lqv_A PRE-mRNA branch site pr 99.7 2.6E-17 8.7E-22 102.5 9.8 70 2-71 9-84 (115)
118 3tyt_A Heterogeneous nuclear r 99.7 1.9E-17 6.5E-22 113.0 9.9 70 2-71 5-79 (205)
119 2lea_A Serine/arginine-rich sp 99.7 9.7E-18 3.3E-22 107.5 7.8 72 2-73 48-128 (135)
120 2dh8_A DAZ-associated protein 99.7 1E-17 3.6E-22 102.7 7.5 72 2-74 17-95 (105)
121 2ek1_A RNA-binding protein 12; 99.7 5E-18 1.7E-22 102.2 5.8 70 2-71 16-92 (95)
122 1x5p_A Negative elongation fac 99.7 8.2E-17 2.8E-21 97.4 11.2 69 2-73 16-86 (97)
123 2j76_E EIF-4B, EIF4B, eukaryot 99.7 9.4E-18 3.2E-22 102.2 7.0 68 2-71 20-97 (100)
124 2nlw_A Eukaryotic translation 99.7 1.9E-17 6.5E-22 101.7 8.4 71 2-72 16-98 (105)
125 2e5g_A U6 snRNA-specific termi 99.7 3.7E-17 1.3E-21 98.4 9.4 70 2-72 9-80 (94)
126 1x5o_A RNA binding motif, sing 99.7 3.5E-17 1.2E-21 101.7 9.3 61 2-62 26-90 (114)
127 2m2b_A RNA-binding protein 10; 99.7 9.7E-18 3.3E-22 106.9 6.9 69 2-71 24-107 (131)
128 2mss_A Protein (musashi1); RNA 99.7 1.3E-17 4.3E-22 96.4 6.7 59 3-62 1-64 (75)
129 2cqg_A TDP-43, TAR DNA-binding 99.7 3.1E-17 1E-21 100.2 8.8 72 2-73 16-92 (103)
130 1wg1_A KIAA1579 protein, homol 99.7 1.5E-17 5.3E-22 99.0 7.3 68 2-71 6-75 (88)
131 2kn4_A Immunoglobulin G-bindin 99.7 4.2E-17 1.4E-21 106.7 9.8 71 2-72 71-148 (158)
132 1wg5_A Heterogeneous nuclear r 99.7 6.2E-17 2.1E-21 99.3 9.9 68 2-70 16-92 (104)
133 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1E-17 3.4E-22 97.1 6.0 67 2-69 1-76 (77)
134 2dgw_A Probable RNA-binding pr 99.7 3.6E-17 1.2E-21 97.8 8.5 70 2-73 11-86 (91)
135 3q2s_C Cleavage and polyadenyl 99.7 1.3E-17 4.5E-22 115.6 7.2 69 2-70 69-148 (229)
136 2rs2_A Musashi-1, RNA-binding 99.7 4.9E-17 1.7E-21 100.6 9.0 70 2-72 26-102 (109)
137 2lcw_A RNA-binding protein FUS 99.5 6.2E-19 2.1E-23 110.1 0.0 72 2-73 8-96 (116)
138 1fj7_A Nucleolin RBD1, protein 99.7 8.2E-18 2.8E-22 102.5 4.9 69 2-71 18-94 (101)
139 3s7r_A Heterogeneous nuclear r 99.7 6.2E-17 2.1E-21 96.0 8.6 68 2-70 12-86 (87)
140 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5.5E-17 1.9E-21 104.0 8.9 68 2-69 64-138 (140)
141 2f3j_A RNA and export factor b 99.7 6E-17 2E-21 108.2 9.1 70 2-71 89-166 (177)
142 2dnn_A RNA-binding protein 12; 99.7 7.8E-17 2.7E-21 99.8 8.9 69 2-72 17-91 (109)
143 2hgn_A Heterogeneous nuclear r 99.7 7E-18 2.4E-22 108.7 4.3 68 2-71 47-120 (139)
144 2hzc_A Splicing factor U2AF 65 99.7 7E-17 2.4E-21 95.6 8.2 66 2-69 7-85 (87)
145 2dnl_A Cytoplasmic polyadenyla 99.7 5E-17 1.7E-21 101.2 7.3 60 2-62 9-76 (114)
146 2db1_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 102.6 6.1 69 2-71 18-95 (118)
147 2e44_A Insulin-like growth fac 99.7 1.6E-16 5.5E-21 95.8 8.5 70 2-71 16-91 (96)
148 4f02_A Polyadenylate-binding p 99.7 1.5E-16 5.1E-21 108.8 9.3 62 1-62 15-81 (213)
149 2cpy_A RNA-binding protein 12; 99.7 6.1E-17 2.1E-21 100.8 6.6 69 2-71 16-91 (114)
150 2hgl_A HNRPF protein, heteroge 99.7 3.4E-17 1.2E-21 105.1 5.5 69 2-71 45-122 (136)
151 2bz2_A Negative elongation fac 99.7 2.7E-16 9.2E-21 99.0 8.9 69 2-73 40-112 (121)
152 2diu_A KIAA0430 protein; struc 99.7 2.7E-16 9.3E-21 94.0 8.4 65 3-72 11-84 (96)
153 1wel_A RNA-binding protein 12; 99.7 2.4E-17 8.2E-22 104.1 4.0 68 2-70 26-102 (124)
154 1iqt_A AUF1, heterogeneous nuc 99.7 4.6E-17 1.6E-21 93.9 4.9 59 3-62 1-64 (75)
155 3egn_A RNA-binding protein 40; 99.7 1.8E-16 6E-21 102.3 7.9 70 2-71 46-129 (143)
156 3u1l_A PRE-mRNA-splicing facto 99.7 2.2E-16 7.7E-21 109.8 8.7 72 2-74 135-231 (240)
157 2lmi_A GRSF-1, G-rich sequence 99.7 7.2E-17 2.5E-21 99.4 4.6 60 2-62 12-78 (107)
158 4f02_A Polyadenylate-binding p 99.7 4.1E-16 1.4E-20 106.6 8.7 71 2-72 104-179 (213)
159 2adc_A Polypyrimidine tract-bi 99.6 9.1E-16 3.1E-20 105.9 9.1 70 2-71 35-109 (229)
160 2dha_A FLJ20171 protein; RRM d 99.6 1.3E-16 4.3E-21 100.8 4.2 69 2-71 24-102 (123)
161 1fxl_A Paraneoplastic encephal 99.6 2.1E-15 7.3E-20 98.4 10.2 70 2-71 3-79 (167)
162 2qfj_A FBP-interacting repress 99.6 1.7E-15 5.7E-20 103.0 10.0 72 2-73 126-206 (216)
163 1b7f_A Protein (SXL-lethal pro 99.6 1.8E-15 6.2E-20 99.1 9.7 71 2-72 4-81 (168)
164 2xs2_A Deleted in azoospermia- 99.6 4.1E-16 1.4E-20 95.0 5.9 68 2-71 10-85 (102)
165 1qm9_A Polypyrimidine tract-bi 99.6 9.5E-16 3.2E-20 103.3 8.2 71 2-72 4-79 (198)
166 1l3k_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 102.3 8.3 72 2-74 105-183 (196)
167 3nmr_A Cugbp ELAV-like family 99.6 1.6E-15 5.4E-20 99.8 8.7 61 2-62 4-71 (175)
168 2d9o_A DNAJ (HSP40) homolog, s 99.6 6E-15 2.1E-19 89.9 10.5 63 11-73 27-91 (100)
169 3md3_A Nuclear and cytoplasmic 99.6 1.5E-15 5.2E-20 99.0 8.4 69 2-70 1-77 (166)
170 2qfj_A FBP-interacting repress 99.6 2.4E-15 8E-20 102.3 9.6 61 2-62 29-94 (216)
171 2yh0_A Splicing factor U2AF 65 99.6 2.1E-15 7.3E-20 101.2 9.3 72 2-73 115-193 (198)
172 3md3_A Nuclear and cytoplasmic 99.6 2.4E-15 8.3E-20 98.1 9.1 70 2-71 88-164 (166)
173 3nmr_A Cugbp ELAV-like family 99.6 2.2E-15 7.6E-20 99.1 9.0 61 2-62 96-160 (175)
174 2hgm_A HNRPF protein, heteroge 99.6 9E-16 3.1E-20 97.2 6.4 59 2-62 43-107 (126)
175 2g4b_A Splicing factor U2AF 65 99.6 2.1E-15 7E-20 99.2 8.4 69 2-70 95-170 (172)
176 3pgw_A U1-A; protein-RNA compl 99.6 3.4E-15 1.2E-19 105.6 9.8 70 2-71 208-280 (282)
177 1fje_B Nucleolin RBD12, protei 99.6 2.8E-15 9.5E-20 99.0 8.4 72 2-73 100-173 (175)
178 1fxl_A Paraneoplastic encephal 99.6 5.9E-15 2E-19 96.3 9.5 61 2-62 89-154 (167)
179 2adc_A Polypyrimidine tract-bi 99.6 8.3E-15 2.9E-19 101.1 10.2 61 2-62 152-213 (229)
180 3pgw_A U1-A; protein-RNA compl 99.6 7E-15 2.4E-19 104.0 10.0 70 2-71 10-89 (282)
181 1b7f_A Protein (SXL-lethal pro 99.6 8E-15 2.7E-19 95.9 9.5 61 2-62 90-155 (168)
182 2cjk_A Nuclear polyadenylated 99.6 2.6E-15 9E-20 98.3 7.0 70 2-72 88-164 (167)
183 3tyt_A Heterogeneous nuclear r 99.6 2.6E-15 8.9E-20 102.4 7.2 61 2-62 124-189 (205)
184 1qm9_A Polypyrimidine tract-bi 99.6 5.8E-15 2E-19 99.4 8.8 69 2-70 121-195 (198)
185 1l3k_A Heterogeneous nuclear r 99.6 5.5E-15 1.9E-19 99.0 8.4 69 2-71 14-89 (196)
186 2voo_A Lupus LA protein; RNA-b 99.6 4.8E-15 1.6E-19 100.2 7.8 70 2-71 110-184 (193)
187 3sde_A Paraspeckle component 1 99.6 8.6E-15 2.9E-19 102.9 9.3 60 2-62 23-82 (261)
188 2cjk_A Nuclear polyadenylated 99.6 4.9E-15 1.7E-19 97.0 6.7 56 2-57 4-64 (167)
189 3tht_A Alkylated DNA repair pr 99.6 6E-15 2.1E-19 107.4 7.5 60 2-62 19-80 (345)
190 3smz_A Protein raver-1, ribonu 99.5 5.7E-14 2E-18 99.4 10.3 59 2-62 23-81 (284)
191 2g4b_A Splicing factor U2AF 65 99.5 4.4E-14 1.5E-18 92.8 8.9 69 2-72 5-86 (172)
192 2dit_A HIV TAT specific factor 99.5 1.3E-13 4.3E-18 85.5 10.3 70 2-71 16-101 (112)
193 2j8a_A Histone-lysine N-methyl 99.5 1.3E-14 4.6E-19 91.4 5.9 69 2-70 3-92 (136)
194 2ghp_A U4/U6 snRNA-associated 99.5 4.2E-14 1.4E-18 100.4 8.2 71 2-73 211-290 (292)
195 2yh0_A Splicing factor U2AF 65 99.5 5.4E-14 1.8E-18 94.3 8.0 70 2-73 5-87 (198)
196 2pe8_A Splicing factor 45; RRM 99.5 1.9E-13 6.3E-18 84.0 9.5 70 2-71 9-91 (105)
197 3smz_A Protein raver-1, ribonu 99.5 8.7E-14 3E-18 98.4 8.3 72 2-73 185-263 (284)
198 1fje_B Nucleolin RBD12, protei 99.5 2.2E-14 7.4E-19 94.7 4.2 71 2-73 14-90 (175)
199 3sde_A Paraspeckle component 1 99.5 1E-13 3.6E-18 97.3 7.2 60 2-61 97-160 (261)
200 2ghp_A U4/U6 snRNA-associated 99.5 2.5E-13 8.7E-18 96.4 8.9 71 2-72 118-195 (292)
201 1jmt_A Splicing factor U2AF 35 99.4 1.6E-13 5.6E-18 84.0 4.0 62 7-68 21-100 (104)
202 3v4m_A Splicing factor U2AF 65 99.3 5.7E-12 1.9E-16 77.3 8.2 67 3-69 7-92 (105)
203 1owx_A Lupus LA protein, SS-B, 99.3 1.7E-11 6E-16 76.7 9.4 68 2-70 19-94 (121)
204 3ue2_A Poly(U)-binding-splicin 99.3 2E-11 6.8E-16 76.3 8.1 69 2-70 21-105 (118)
205 3s6e_A RNA-binding protein 39; 99.2 2.9E-11 1E-15 75.1 7.1 55 15-69 31-90 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 4.7E-10 1.6E-14 66.4 7.2 66 2-71 8-83 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.8 8.2E-09 2.8E-13 61.4 6.1 65 2-70 16-91 (95)
208 3dxb_A Thioredoxin N-terminall 98.6 8.9E-08 3E-12 65.4 7.3 57 13-69 141-210 (222)
209 1a6b_B Momulv, zinc finger pro 98.3 2.7E-06 9.2E-11 42.6 5.0 25 87-111 7-31 (40)
210 1u6p_A GAG polyprotein; MLV, A 98.2 3.3E-06 1.1E-10 45.4 4.5 27 85-111 18-44 (56)
211 2l9w_A U4/U6 snRNA-associated- 98.1 1.7E-05 5.9E-10 48.3 7.8 65 3-68 23-94 (117)
212 1uw4_A UPF3X; nonsense mediate 98.1 3.3E-05 1.1E-09 45.7 8.7 62 1-62 1-69 (91)
213 3ts2_A Protein LIN-28 homolog 98.0 3.3E-07 1.1E-11 59.2 -1.5 28 16-46 2-29 (148)
214 1whv_A Poly(A)-specific ribonu 98.0 3.5E-05 1.2E-09 45.9 6.7 56 4-62 18-73 (100)
215 1dsq_A Nucleic acid binding pr 97.9 7.9E-06 2.7E-10 37.1 2.3 20 91-110 3-22 (26)
216 2dhx_A Poly (ADP-ribose) polym 97.9 0.00011 3.7E-09 44.2 7.7 53 2-57 9-66 (104)
217 3ctr_A Poly(A)-specific ribonu 97.8 4.9E-05 1.7E-09 45.4 5.3 54 4-60 8-61 (101)
218 1wey_A Calcipressin 1; structu 97.4 0.00063 2.2E-08 41.0 6.5 69 2-71 6-81 (104)
219 1wwh_A Nucleoporin 35, nucleop 97.4 0.0013 4.3E-08 40.7 7.8 57 3-62 26-82 (119)
220 2l08_A Regulator of nonsense t 97.2 0.00084 2.9E-08 40.0 5.6 60 3-62 11-77 (97)
221 2ysa_A Retinoblastoma-binding 97.1 0.00029 1E-08 37.6 2.5 21 89-109 6-26 (55)
222 3pq1_A Poly(A) RNA polymerase; 97.1 0.00027 9.3E-09 53.3 2.9 54 2-56 54-107 (464)
223 1nc8_A Nucleocapsid protein; H 96.9 0.00052 1.8E-08 31.7 2.0 20 90-109 6-25 (29)
224 3nyb_B Protein AIR2; polya RNA 96.4 0.0017 5.7E-08 37.6 2.1 21 90-110 46-66 (83)
225 1cl4_A Protein (GAG polyprotei 96.1 0.0044 1.5E-07 33.4 2.6 22 89-110 29-50 (60)
226 2a51_A Nucleocapsid protein; s 96.0 0.0044 1.5E-07 30.4 2.3 19 90-108 21-39 (39)
227 2cqf_A RNA-binding protein LIN 96.0 0.0065 2.2E-07 33.2 3.1 20 90-109 29-48 (63)
228 3p3d_A Nucleoporin 53; structu 95.8 0.0097 3.3E-07 37.3 3.7 59 2-62 8-85 (132)
229 3d45_A Poly(A)-specific ribonu 95.7 0.055 1.9E-06 41.3 8.3 59 4-66 443-501 (507)
230 2ec7_A GAG polyprotein (PR55GA 95.7 0.0091 3.1E-07 30.8 2.8 18 91-108 7-24 (49)
231 2ihx_A Nucleocapsid (NC) prote 95.7 0.0063 2.2E-07 33.0 2.2 18 92-109 32-49 (61)
232 2a51_A Nucleocapsid protein; s 95.6 0.0063 2.1E-07 29.9 1.8 18 92-109 2-19 (39)
233 2cqf_A RNA-binding protein LIN 95.6 0.04 1.4E-06 29.9 5.3 21 88-108 5-25 (63)
234 2bl6_A Nucleocapsid protein P1 95.6 0.0048 1.7E-07 29.9 1.3 18 91-108 20-37 (37)
235 2bl6_A Nucleocapsid protein P1 95.5 0.0073 2.5E-07 29.3 1.9 18 92-109 2-19 (37)
236 2kn4_A Immunoglobulin G-bindin 95.4 0.017 6E-07 36.6 4.0 26 36-61 11-36 (158)
237 2li8_A Protein LIN-28 homolog 95.4 0.018 6.3E-07 32.4 3.5 20 89-108 23-42 (74)
238 2ihx_A Nucleocapsid (NC) prote 95.3 0.0088 3E-07 32.4 2.0 19 90-108 4-22 (61)
239 2ec7_A GAG polyprotein (PR55GA 95.3 0.0097 3.3E-07 30.7 2.1 20 90-109 27-46 (49)
240 1a1t_A Nucleocapsid protein; s 95.3 0.0095 3.3E-07 31.5 2.0 17 92-108 35-51 (55)
241 1cl4_A Protein (GAG polyprotei 95.0 0.0041 1.4E-07 33.6 0.0 20 91-110 2-21 (60)
242 2li8_A Protein LIN-28 homolog 94.9 0.037 1.3E-06 31.2 3.8 21 89-109 45-65 (74)
243 3ts2_A Protein LIN-28 homolog 94.7 0.025 8.5E-07 36.2 3.1 19 90-108 97-115 (148)
244 1a1t_A Nucleocapsid protein; s 94.6 0.015 5.2E-07 30.7 1.6 20 90-109 12-31 (55)
245 2lli_A Protein AIR2; RNA surve 93.4 0.067 2.3E-06 33.0 3.1 20 89-108 104-123 (124)
246 2i2y_A Fusion protein consists 92.4 0.06 2E-06 33.9 1.8 36 36-72 11-49 (150)
247 4eyt_A Telomerase associated p 92.0 1.1 3.7E-05 26.2 8.8 57 3-62 14-70 (129)
248 3nyb_B Protein AIR2; polya RNA 91.1 0.076 2.6E-06 30.5 1.2 21 89-109 4-24 (83)
249 2lli_A Protein AIR2; RNA surve 88.1 0.34 1.2E-05 29.7 2.5 16 92-107 24-40 (124)
250 3j21_T 50S ribosomal protein L 77.7 7.8 0.00027 22.2 5.3 54 3-56 24-81 (86)
251 3lpe_A Putative transcription 74.5 9.9 0.00034 21.8 5.7 35 27-61 39-73 (92)
252 3h7h_B Transcription elongatio 68.2 6.9 0.00023 23.3 3.6 35 27-61 40-74 (106)
253 2cu1_A Mitogen-activated prote 62.1 22 0.00074 21.0 6.8 66 6-74 21-90 (103)
254 3u5e_X 60S ribosomal protein L 60.5 20 0.00068 22.5 4.8 51 4-54 81-135 (142)
255 4a17_R RPL23A, 60S ribosomal p 60.2 20 0.00067 22.8 4.7 51 4-54 89-143 (150)
256 1vq8_S 50S ribosomal protein L 59.9 13 0.00043 21.2 3.5 49 4-52 24-76 (85)
257 3uzu_A Ribosomal RNA small sub 53.2 6.5 0.00022 27.4 1.9 30 4-33 117-146 (279)
258 2hqh_E Restin; beta/BETA struc 52.4 3.7 0.00013 17.9 0.3 17 93-109 6-22 (26)
259 3fut_A Dimethyladenosine trans 51.8 14 0.0005 25.5 3.5 28 3-31 112-139 (271)
260 4e8u_A Putative uncharacterize 50.7 48 0.0017 21.5 5.9 54 3-56 14-81 (172)
261 2zkr_s 60S ribosomal protein L 50.6 29 0.00098 22.2 4.4 50 4-53 95-148 (156)
262 3iz5_X 60S ribosomal protein L 47.9 17 0.00057 23.2 3.0 51 4-54 91-145 (152)
263 4hhu_A OR280; engineered prote 47.5 46 0.0016 20.3 5.7 57 4-60 45-106 (170)
264 3fry_A Probable copper-exporti 46.4 30 0.001 17.9 6.0 53 3-57 8-60 (73)
265 2exu_A Transcription initiatio 46.1 18 0.00063 24.0 3.1 35 28-62 139-173 (200)
266 2g0c_A ATP-dependent RNA helic 45.8 34 0.0012 18.3 6.6 56 3-62 2-63 (76)
267 1qyr_A KSGA, high level kasuga 43.0 22 0.00076 24.2 3.3 28 3-30 92-119 (252)
268 3tqs_A Ribosomal RNA small sub 42.8 9.7 0.00033 26.1 1.4 28 5-32 100-127 (255)
269 2kt2_A Mercuric reductase; nme 40.7 35 0.0012 16.9 6.0 46 1-47 1-46 (69)
270 1i4w_A Mitochondrial replicati 40.0 24 0.00084 25.5 3.2 21 4-24 145-165 (353)
271 2pzo_E CAP-Gly domain-containi 39.7 7.5 0.00026 19.0 0.3 17 93-109 23-39 (42)
272 3ftd_A Dimethyladenosine trans 39.5 21 0.00073 24.2 2.7 23 4-26 98-120 (249)
273 2jrh_A Mitogen-activated prote 37.9 58 0.002 18.7 5.9 63 7-72 18-84 (94)
274 2c60_A Human mitogen-activated 37.0 65 0.0022 19.0 5.3 60 8-70 46-109 (111)
275 3swz_A Steroid 17-alpha-hydrox 35.6 81 0.0028 22.9 5.5 48 5-56 18-69 (494)
276 2npt_B Mitogen-activated prote 34.4 70 0.0024 18.6 5.9 61 7-70 34-98 (100)
277 3p8b_B Transcription antitermi 34.3 53 0.0018 20.3 3.8 34 28-61 33-66 (152)
278 1ik9_C DNA ligase IV; DNA END 32.0 33 0.0011 16.1 1.9 16 10-25 19-34 (37)
279 4a4j_A Pacszia, cation-transpo 30.0 58 0.002 16.3 5.8 53 3-56 5-60 (69)
280 2e5p_A Protein PHF1, PHD finge 29.8 35 0.0012 18.5 2.0 13 36-48 35-47 (68)
281 1cqm_A Ribosomal protein S6; a 29.0 64 0.0022 18.6 3.3 48 10-57 11-77 (101)
282 1o57_A PUR operon repressor; p 28.2 1.5E+02 0.0052 20.6 5.9 41 18-58 47-87 (291)
283 3h87_C Putative uncharacterize 24.1 5.9 0.0002 22.0 -1.8 13 1-13 1-13 (73)
284 3d53_A Inorganic pyrophosphata 24.0 1.5E+02 0.0051 19.1 4.6 38 15-58 132-169 (173)
285 2j5a_A 30S ribosomal protein S 23.9 69 0.0024 18.8 2.8 47 10-56 17-83 (110)
286 2eqj_A Metal-response element- 23.6 52 0.0018 17.7 2.0 13 36-48 39-51 (66)
287 2k5n_A Putative cold-shock pro 23.3 88 0.003 17.0 3.0 12 36-47 12-23 (74)
288 2od0_A Hypothetical protein VP 23.2 1.1E+02 0.0036 17.6 3.5 23 12-34 3-25 (105)
289 1eij_A Hypothetical protein MT 22.7 57 0.0019 18.3 2.1 20 7-26 50-69 (80)
290 4bby_A Alkyldihydroxyacetoneph 22.2 84 0.0029 24.6 3.7 51 10-60 352-410 (658)
291 3dxs_X Copper-transporting ATP 22.2 89 0.003 15.8 6.9 55 3-58 5-63 (74)
292 1fme_A FSD-EY peptide; beta-BE 22.0 52 0.0018 14.0 1.4 13 13-25 13-25 (28)
293 3n9y_A Cholesterol SIDE-chain 22.0 2.1E+02 0.0073 20.5 5.7 37 16-56 36-72 (487)
294 2cs4_A Protein C12ORF2; GTP bi 21.8 43 0.0015 19.5 1.5 28 6-33 21-49 (95)
295 2ctp_A DNAJ homolog subfamily 21.6 58 0.002 17.5 2.0 19 7-25 13-31 (78)
296 3ulj_A LIN28B, DNA-binding pro 21.5 76 0.0026 18.1 2.5 9 36-44 18-26 (90)
297 1hdj_A Human HSP40, HDJ-1; mol 21.4 59 0.002 17.4 2.0 19 7-25 9-27 (77)
298 2kcm_A Cold shock domain famil 21.0 1E+02 0.0036 16.7 3.0 13 36-48 10-22 (74)
299 3kiz_A Phosphoribosylformylgly 20.9 1.7E+02 0.0058 21.6 4.8 45 17-61 317-362 (394)
300 2dn9_A DNAJ homolog subfamily 20.7 62 0.0021 17.3 2.0 19 7-25 13-31 (79)
301 2och_A Hypothetical protein DN 20.4 65 0.0022 17.0 2.0 18 7-24 14-31 (73)
302 1h95_A CSD, Y-box binding prot 20.1 86 0.003 17.2 2.5 12 36-47 18-29 (79)
No 1
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.85 E-value=4.3e-21 Score=120.02 Aligned_cols=59 Identities=32% Similarity=0.384 Sum_probs=56.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+++|+++|+++|.+||+|..|.|+.+ |||||+|++.++|++||+.||+.+
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 75 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCE
Confidence 58999999999999999999999999999999855 999999999999999999999986
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=115.42 Aligned_cols=71 Identities=24% Similarity=0.447 Sum_probs=61.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..+.|+. .++|||||+|.+.++|++|++.||+.. +..|.|..++
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 6899999999999999999999999999999864 357899999999999999999999997 4444444443
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.83 E-value=9.4e-20 Score=136.71 Aligned_cols=71 Identities=30% Similarity=0.625 Sum_probs=62.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+.||+++|.++|++||.|..|.|+. .++|||||+|.+.++|++||+.||+.. .|.|+++...
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 5899999999999999999999999999999864 368999999999999999999999997 4566666543
No 4
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=7.3e-20 Score=115.82 Aligned_cols=73 Identities=22% Similarity=0.516 Sum_probs=65.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+.||+.. .|.|+++..+
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence 48999999999999999999999999999998643 48999999999999999999999987 5777777765
Q ss_pred CC
Q 046599 73 RG 74 (131)
Q Consensus 73 ~~ 74 (131)
..
T Consensus 103 ~~ 104 (126)
T 3ex7_B 103 GP 104 (126)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 5
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=4.4e-20 Score=120.87 Aligned_cols=73 Identities=23% Similarity=0.437 Sum_probs=63.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..|.|+. .+++||||+|.+.++|++||+.||+.. .|+|+++...
T Consensus 40 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 40 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGF 119 (156)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 5899999999999999999999999999999864 356899999999999999999999986 5666666654
Q ss_pred CC
Q 046599 73 RG 74 (131)
Q Consensus 73 ~~ 74 (131)
..
T Consensus 120 ~~ 121 (156)
T 1h2v_Z 120 KE 121 (156)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=112.59 Aligned_cols=72 Identities=13% Similarity=0.332 Sum_probs=61.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCC--eeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc------ceEEE
Q 046599 1 MSRVYVGNLDSRVSERDLEDEFRVFGV--IRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN------GWRVE 67 (131)
Q Consensus 1 ~~~l~V~~L~~~~t~~~l~~~f~~~G~--i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~------~~~v~ 67 (131)
|.||||+|||+++|+++|+++|++||. |..|.++. .++|||||+|.+.++|++||+.||+.+ +..|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 789999999999999999999999995 56788763 468999999999999999999999963 44555
Q ss_pred EeecC
Q 046599 68 LSHNS 72 (131)
Q Consensus 68 ~~~~~ 72 (131)
|..++
T Consensus 89 V~~Ak 93 (95)
T 2lkz_A 89 VDFAK 93 (95)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 55553
No 7
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=112.23 Aligned_cols=71 Identities=41% Similarity=0.768 Sum_probs=61.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc--CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR--RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~--~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..|.|.. .+++||||+|.+.++|++||+.||+.. + |.|+++...
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 5899999999999999999999999999999864 357999999999999999999999986 4 455555443
No 8
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.6e-19 Score=110.63 Aligned_cols=70 Identities=27% Similarity=0.325 Sum_probs=63.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--c-----eEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--G-----WRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~-----~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.||+.+ + ..|.|..+.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 58999999999999999999999999999999865 999999999999999999999986 5 6677777654
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-19 Score=107.73 Aligned_cols=73 Identities=33% Similarity=0.530 Sum_probs=63.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++++++|+++|++||.|..+.|+. .++|||||+|.+.++|++|++.||+.. .|+|+++..+
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 5899999999999999999999999999999864 357999999999999999999999986 5666666554
Q ss_pred CC
Q 046599 73 RG 74 (131)
Q Consensus 73 ~~ 74 (131)
..
T Consensus 86 ~~ 87 (95)
T 2dnz_A 86 LD 87 (95)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 10
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=107.64 Aligned_cols=70 Identities=27% Similarity=0.510 Sum_probs=62.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSRG 74 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~~ 74 (131)
++|||+|||+++|+++|+++|++||.|..+.|. ++||||+|.+.++|++|++.||+.. .++|+++..++.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 689999999999999999999999999999997 7999999999999999999999986 556666655443
No 11
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=110.34 Aligned_cols=72 Identities=51% Similarity=0.942 Sum_probs=64.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|..+.|+.+++|||||+|.+.++|++|++.||+.. .+.|+++...+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 6899999999999999999999999999999986678999999999999999999999886 56666666544
No 12
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=2.7e-19 Score=109.61 Aligned_cols=68 Identities=34% Similarity=0.571 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|.+||.|..+.|+ ++||||+|.+.++|++||+.||+.. + |.|+++...
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 589999999999999999999999999999987 7899999999999999999999986 4 455555443
No 13
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=111.54 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=60.5
Q ss_pred ceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc------ceEEEEeecC
Q 046599 2 SRVYVGNLDS-RVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN------GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~------~~~v~~~~~~ 72 (131)
.+|||+|||+ ++|+++|+++|++||.|..+.|+.. ++||||+|++.++|++||+.||+.. .|.|+++...
T Consensus 16 ~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 5899999999 9999999999999999999999854 7999999999999999999998642 4555555543
No 14
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=109.24 Aligned_cols=75 Identities=32% Similarity=0.619 Sum_probs=65.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++++++|+++|++||.|..+.|+. .++|||||+|.+.++|++||+.||+.. .|+|+++...
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 92 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 92 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 5899999999999999999999999999999974 357899999999999999999999986 5777777765
Q ss_pred CCCC
Q 046599 73 RGGG 76 (131)
Q Consensus 73 ~~~~ 76 (131)
....
T Consensus 93 ~~~~ 96 (102)
T 1x5s_A 93 SDNR 96 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5433
No 15
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=111.41 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=61.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCC--c--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK--N--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~--~--~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|..|.|+.. +|||||+|++.++|+.||+.|++. + +..|.|..+.+
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 68999999999999999999999999999999865 899999999999999999998753 3 55555555443
No 16
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=1.4e-19 Score=113.05 Aligned_cols=71 Identities=28% Similarity=0.511 Sum_probs=61.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC---CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR---PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~---~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+.||+.. +..|.+..+.
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 58999999999999999999999999999998743 47899999999999999999999997 4444444443
No 17
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-19 Score=108.17 Aligned_cols=73 Identities=23% Similarity=0.503 Sum_probs=63.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC------CCcEEEEEEcCHHHHHHHHHHh-cCCc----ceEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR------PPGYAFIDFDDYRDAQDAIREL-DGKN----GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~------~~g~~fv~f~~~~~a~~ai~~l-~g~~----~~~v~~~~ 70 (131)
++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+.| |+.. .|.|+++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~ 95 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence 58999999999999999999999999999999654 4899999999999999999999 8876 56666666
Q ss_pred cCCC
Q 046599 71 NSRG 74 (131)
Q Consensus 71 ~~~~ 74 (131)
.+..
T Consensus 96 ~~~~ 99 (107)
T 2cph_A 96 SEVT 99 (107)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 18
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=9.7e-19 Score=106.25 Aligned_cols=71 Identities=25% Similarity=0.560 Sum_probs=62.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++++++|+++|++||.|..+.|+. .++|||||+|.+.++|++||+ ||+.. .|.|+++..+
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 5899999999999999999999999999999974 368999999999999999998 99886 4566665544
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
.
T Consensus 90 ~ 90 (99)
T 2dgs_A 90 D 90 (99)
T ss_dssp C
T ss_pred c
Confidence 3
No 19
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=108.66 Aligned_cols=73 Identities=30% Similarity=0.536 Sum_probs=64.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc---CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR---RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSRG 74 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~~ 74 (131)
++|||+|||+++|+++|+++|++||.|..|.|+. ..++||||+|.+.++|++||+.||+.. .|.|+++..+..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 6899999999999999999999999999999874 357899999999999999999999986 566666665443
No 20
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=8.5e-19 Score=105.23 Aligned_cols=69 Identities=26% Similarity=0.535 Sum_probs=60.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|..+.+. ++||||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 589999999999999999999999999999997 6699999999999999999999987 44444444433
No 21
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=106.76 Aligned_cols=72 Identities=28% Similarity=0.416 Sum_probs=62.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC---CCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR---PPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~---~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|..|.|+.+ +++||||+|.+.++|++||+.||+.. .|.|+++..+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 58999999999999999999999999999998743 58999999999999999999999986 45555555544
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=108.40 Aligned_cols=72 Identities=38% Similarity=0.640 Sum_probs=63.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++++++|+++|++||.|..|.|+. .++|||||+|.+.++|++||+.||+.. .|.|+++...
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 6899999999999999999999999999999874 357999999999999999999999986 5666666544
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
.
T Consensus 94 ~ 94 (103)
T 2dnm_A 94 R 94 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 23
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.4e-19 Score=107.83 Aligned_cols=72 Identities=22% Similarity=0.225 Sum_probs=62.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc------ceEEEEeecCCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN------GWRVELSHNSRG 74 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~------~~~v~~~~~~~~ 74 (131)
.+|||+|||+.+++++|+++|++||.|..|.|+.. +|||||+|++.++|++|++.|++.. .+.|+++..+..
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp SEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 48999999999999999999999999999988754 8999999999999999999887532 567777765443
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=110.70 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=61.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.+|||+|||+++++++|+++|++||.|..+.|+. .++|||||+|++.++|++||+.||+.. +..|.+..+
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5899999999999999999999999999999863 457999999999999999999999997 444444443
No 25
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=107.30 Aligned_cols=71 Identities=34% Similarity=0.656 Sum_probs=61.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSV-WVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~-~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~ 71 (131)
++|||+|||+++++++|+++|++||.|..+ .|+. .++|||||+|.+.++|++|++.||+.. + +.|+++..
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecc
Confidence 689999999999999999999999999998 8864 358999999999999999999999986 4 45555544
Q ss_pred C
Q 046599 72 S 72 (131)
Q Consensus 72 ~ 72 (131)
+
T Consensus 86 ~ 86 (96)
T 1x5t_A 86 K 86 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.5e-19 Score=107.76 Aligned_cols=71 Identities=28% Similarity=0.497 Sum_probs=61.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC---CCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR---PPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~---~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~ 72 (131)
++|||+|||+.+++++|+++|++||.|..|.|+.+ .+|||||+|.+.++|++||+.||+.. + |+|+++...
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 16 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 58999999999999999999999999999998752 57999999999999999999999986 4 455555443
No 27
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=105.98 Aligned_cols=72 Identities=31% Similarity=0.496 Sum_probs=61.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|..+.|+. .++|||||+|.+.++|++||+.||+.. +..|.+..+.+
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 5899999999999999999999999999999864 357999999999999999999999986 44444444433
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.7e-19 Score=108.00 Aligned_cols=72 Identities=32% Similarity=0.451 Sum_probs=63.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..|.|+. .++|||||+|.+.++|++||+.||+.. .|+|+++...
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 5899999999999999999999999999999864 357899999999999999999999986 4566665544
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
.
T Consensus 96 ~ 96 (105)
T 1x5u_A 96 N 96 (105)
T ss_dssp S
T ss_pred C
Confidence 3
No 29
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=109.22 Aligned_cols=72 Identities=26% Similarity=0.511 Sum_probs=61.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++++++|+++|++||.|..|.|+. .++|||||+|.+.++|++||+.||+.. +..|.+..+.+
T Consensus 13 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp SCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 5899999999999999999999999999999864 368999999999999999999999986 44444444433
No 30
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=107.86 Aligned_cols=71 Identities=13% Similarity=0.196 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcC--Cc----ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG--KN----GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g--~~----~~~v~~~~~~~ 73 (131)
++|||+|||+.+|+++|+++|++||.|..+.|+.. +|||||+|++.++|+.|++.|++ .. .+.|+++..+.
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 58999999999999999999999999999988755 89999999999999999998863 32 45555555443
No 31
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-19 Score=105.45 Aligned_cols=68 Identities=32% Similarity=0.549 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..+.|+ ++||||+|.+.++|++|++.||+.. + ++|+++...
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 589999999999999999999999999999997 6799999999999999999999986 4 455555443
No 32
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=107.92 Aligned_cols=72 Identities=26% Similarity=0.566 Sum_probs=61.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc--------CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR--------RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~--------~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
++|||+|||+++++++|+++|++||.|..+.|.. .++|||||+|.+.++|++|++.||+.. +..|.+..+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 5899999999999999999999999999998863 346899999999999999999999987 444444444
Q ss_pred CC
Q 046599 72 SR 73 (131)
Q Consensus 72 ~~ 73 (131)
.+
T Consensus 86 ~~ 87 (98)
T 2cpf_A 86 ER 87 (98)
T ss_dssp SC
T ss_pred cC
Confidence 33
No 33
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=106.98 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=62.2
Q ss_pred ceEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEccC--CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLE----DEFRVFGVIRSVWVARR--PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~----~~f~~~G~i~~~~i~~~--~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++++++|+ ++|++||.|..|.|+.+ .++||||+|.+.++|++||+.||+.. +..|.+..+++
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 689999999999999999 99999999999999743 38999999999999999999999986 44455544433
No 34
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=108.98 Aligned_cols=72 Identities=28% Similarity=0.610 Sum_probs=63.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|..|.|.. .++|||||+|.+.++|++||+.||+.. .|.|+++....
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 5899999999999999999999999999999874 357999999999999999999999986 56666665443
No 35
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.8e-19 Score=107.91 Aligned_cols=70 Identities=26% Similarity=0.549 Sum_probs=60.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc------CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR------RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~------~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~ 71 (131)
.+|||+|||+++++++|+++|++|| |..|.|+. .++|||||+|.+.++|++|| .||+.. + |.|+++..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 5899999999999999999999999 99999873 34789999999999999999 899986 4 45555544
Q ss_pred CC
Q 046599 72 SR 73 (131)
Q Consensus 72 ~~ 73 (131)
+.
T Consensus 94 ~~ 95 (104)
T 1wi8_A 94 AQ 95 (104)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 36
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=106.98 Aligned_cols=69 Identities=25% Similarity=0.291 Sum_probs=59.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
.+|||+|||+.+|+++|+++|++||.|..+.++. .+|||||+|++.++|++|++.|++.. +..|.|..+
T Consensus 22 ~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 22 PVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 4799999999999999999999999999999874 58999999999999999999999864 444444443
No 37
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=1.9e-19 Score=111.91 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEc-cCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFG-VIRSVWVA-RRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G-~i~~~~i~-~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.+|||+|||+++++++|+++|++|| .|..+.|. .+++|||||+|.+.++|++||+.||+.+ +..|.+..+
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4899999999999999999999999 89999985 4678999999999999999999999987 444554444
No 38
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=7.2e-19 Score=106.42 Aligned_cols=71 Identities=30% Similarity=0.454 Sum_probs=64.0
Q ss_pred ceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCCCC
Q 046599 2 SRVYVGNLDS-RVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSRGG 75 (131)
Q Consensus 2 ~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~~~ 75 (131)
++|||+|||+ .+++++|+++|++||.|..+.|. +|||||+|.+.++|+.|++.||+.. .+.|+++......
T Consensus 11 ~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 11 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp EEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 5899999998 99999999999999999999985 8999999999999999999999986 6788888765543
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=104.36 Aligned_cols=70 Identities=27% Similarity=0.536 Sum_probs=61.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
.+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|+.|++.||+.. .++|+++..
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 58999999999999999999999999999998643 47899999999999999999999986 455555544
No 40
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=105.96 Aligned_cols=71 Identities=30% Similarity=0.519 Sum_probs=62.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~ 73 (131)
++|||+|||+.+|+++|+++|++||.|..+.+... ++||||+|.+.++|++|++.||+.. .++|+++..+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 58999999999999999999999999999998754 8999999999999999999999986 55666665543
No 41
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=105.35 Aligned_cols=70 Identities=29% Similarity=0.519 Sum_probs=61.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc------ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN------GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~------~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..+.+... ++||||+|.+.++|++|++.||+.. .++|+++.++
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp SCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 58999999999999999999999999999999865 8999999999999999999999875 3455555543
No 42
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=107.97 Aligned_cols=70 Identities=27% Similarity=0.514 Sum_probs=62.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~ 72 (131)
++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++|++.||+.. + |+|+++...
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 58999999999999999999999999999999865 8999999999999999999999986 4 455555443
No 43
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-18 Score=107.52 Aligned_cols=70 Identities=24% Similarity=0.404 Sum_probs=60.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc---ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN---GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~---~~~v~~~~~ 71 (131)
++|||+|||+++|+++|+++|++||.|..|.|+. .++|||||+|.+.++|++||+.|++.. .|+|+++..
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYL 95 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEESTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEccc
Confidence 6899999999999999999999999999999974 357999999999999999999999832 455555544
No 44
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=6.5e-19 Score=104.40 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=59.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEe
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELS 69 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~ 69 (131)
..|||+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.+.++|+.|++.||+.+ +..|.+.
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 4699999999999999999999999999999865 69999999999999999999999987 4444443
No 45
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1.6e-18 Score=106.50 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=62.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc-------ceEEEEe
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN-------GWRVELS 69 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~-------~~~v~~~ 69 (131)
++|||+|||+++++++|+++|++||.|..|.|+. .++|||||+|.+.++|++||+.||+.. .+.|+++
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 93 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 93 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEEC
Confidence 5899999999999999999999999999999874 367999999999999999999999853 3555555
Q ss_pred ecCC
Q 046599 70 HNSR 73 (131)
Q Consensus 70 ~~~~ 73 (131)
....
T Consensus 94 ~~~~ 97 (106)
T 2dgp_A 94 DSES 97 (106)
T ss_dssp CCCS
T ss_pred Cccc
Confidence 5443
No 46
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.4e-18 Score=102.16 Aligned_cols=70 Identities=27% Similarity=0.540 Sum_probs=60.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.+|||+|||+++++++|+++|++||.|..+.++. .++|||||+|.+.++|++|++.||+.. +..|.+..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 5899999999999999999999999999998864 347899999999999999999999997 444444444
No 47
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=109.56 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcC--Cc----ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG--KN----GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g--~~----~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|..|.|+.. +|||||+|++.++|++|++.|++ .. .|.|+++..+.
T Consensus 32 ~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 32 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp SEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 47999999999999999999999999999998865 89999999999999999999874 22 56666665544
No 48
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=106.39 Aligned_cols=72 Identities=31% Similarity=0.533 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++++++|+++|++||.|..|.|+. .++|||||+|.+.++|++||+.||+.. +..|.+..+.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 16 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp EEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 5899999999999999999999999999999864 346899999999999999999999987 44444444443
No 49
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-18 Score=103.76 Aligned_cols=70 Identities=33% Similarity=0.493 Sum_probs=61.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVF--GVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSRG 74 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~~ 74 (131)
++|||+|||+++|+++|+++|++| |.|..+.+. ++||||+|.+.++|++||+.||+.. +..|.+..+.+.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 16 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 589999999999999999999999 899999875 7899999999999999999999987 445555554443
No 50
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-19 Score=106.20 Aligned_cols=68 Identities=32% Similarity=0.524 Sum_probs=58.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcC-Cc--c--eEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGV-IRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG-KN--G--WRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~-i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g-~~--~--~~v~~~~~ 71 (131)
++|||+|||+++|+++|+++|++||. |..+.+. .++||||+|.+.++|++|++.||+ .. + ++|+++..
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 9 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 68999999999999999999999999 6666654 489999999999999999999999 65 4 45555544
No 51
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=3.8e-18 Score=106.23 Aligned_cols=71 Identities=30% Similarity=0.598 Sum_probs=61.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~ 72 (131)
++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+.||+.. + |+|+++..+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 58999999999999999999999999999998743 36899999999999999999999986 4 455555443
No 52
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=8.2e-19 Score=109.36 Aligned_cols=71 Identities=24% Similarity=0.404 Sum_probs=61.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~ 72 (131)
++|||+|||+++++++|+++|.+||.|..|.|+. .++|||||+|.+.++|++||+.||+.. + |+|+++..+
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 5899999999999999999999999999998864 346899999999999999999999986 4 455555443
No 53
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=103.13 Aligned_cols=70 Identities=23% Similarity=0.536 Sum_probs=61.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC------CCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR------PPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~------~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~ 71 (131)
++|||+|||+++|+++|+++|++||.|..+.|+.+ .+|||||+|.+.++|++|++.||+.. + ++|+++.+
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 58999999999999999999999999999998631 68999999999999999999999997 4 45555543
No 54
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=110.96 Aligned_cols=72 Identities=29% Similarity=0.468 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++++++|+++|+.||.|..|.|+. .++|||||+|.+.++|++||+.||+.. +..|.|..+.+
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5899999999999999999999999999999864 247899999999999999999999986 44444444443
No 55
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=106.97 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=61.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhc------CCc--ceEEEE
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELD------GKN--GWRVEL 68 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~------g~~--~~~v~~ 68 (131)
++|||+|||+++|+++|+++|.+||.|..|.|+. .++|||||+|.+.++|++||+.|| +.. +..|.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v 95 (111)
T 1x4h_A 16 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKV 95 (111)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEE
Confidence 5899999999999999999999999999999974 368999999999999999999999 665 445555
Q ss_pred eecCC
Q 046599 69 SHNSR 73 (131)
Q Consensus 69 ~~~~~ 73 (131)
..+.+
T Consensus 96 ~~a~~ 100 (111)
T 1x4h_A 96 DLAVT 100 (111)
T ss_dssp ECCCC
T ss_pred EECCC
Confidence 54443
No 56
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=106.51 Aligned_cols=72 Identities=22% Similarity=0.523 Sum_probs=63.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++++++|+++|++||.|..|.|+. .++|||||+|.+.++|++|++.||+.. .+.|+++..+
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 4799999999999999999999999999999863 347999999999999999999999986 5677777654
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
+
T Consensus 104 ~ 104 (106)
T 1p27_B 104 G 104 (106)
T ss_dssp S
T ss_pred C
Confidence 3
No 57
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=107.25 Aligned_cols=72 Identities=24% Similarity=0.427 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCC-c--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFG-VIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGK-N--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G-~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~-~--~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++|| .|..|.|+. .++|||||+|.+.++|++||+.|++. . +..|.+..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 899998864 46899999999999999999987543 2 5555555554
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
+
T Consensus 82 ~ 82 (91)
T 2lxi_A 82 P 82 (91)
T ss_dssp S
T ss_pred C
Confidence 4
No 58
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=1.1e-18 Score=108.02 Aligned_cols=67 Identities=30% Similarity=0.597 Sum_probs=60.0
Q ss_pred ceEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSR-VSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||++ +++++|+++|++||.|..|.| .++||||+|.+.++|++|++.||+.. .|+|+++..
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 58999999999 999999999999999999998 48999999999999999999999986 445555543
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.2e-18 Score=104.37 Aligned_cols=71 Identities=21% Similarity=0.350 Sum_probs=62.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc---CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR---RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++++++|+++|++||.|..+.|.. .+++||||+|.+.++|++|++.||+.. .|+|+++...
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 5899999999999999999999999999998874 357999999999999999999999986 4556655543
No 60
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=2.5e-18 Score=105.42 Aligned_cols=72 Identities=33% Similarity=0.550 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC----CCcEEEEEEcCHHHHHHHHHHhcCCc--c-----eEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR----PPGYAFIDFDDYRDAQDAIRELDGKN--G-----WRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~----~~g~~fv~f~~~~~a~~ai~~l~g~~--~-----~~v~~~~ 70 (131)
++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+.||+.. + |.|+++.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 58999999999999999999999999999998743 37899999999999999999999975 3 4555554
Q ss_pred cCC
Q 046599 71 NSR 73 (131)
Q Consensus 71 ~~~ 73 (131)
..+
T Consensus 96 ~~~ 98 (105)
T 2dnh_A 96 TDK 98 (105)
T ss_dssp SSC
T ss_pred cCc
Confidence 433
No 61
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.3e-19 Score=109.40 Aligned_cols=72 Identities=24% Similarity=0.390 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEccC--------CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEE
Q 046599 2 SRVYVGNLDSRVSERDLE---DEFRVFGVIRSVWVARR--------PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVEL 68 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~---~~f~~~G~i~~~~i~~~--------~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~ 68 (131)
++|||+|||+++++++|. ++|++||.|..+.|+.+ ++|||||+|.+.++|++||+.||+.. +..|.+
T Consensus 16 ~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 95 (111)
T 2cpi_A 16 NLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 95 (111)
T ss_dssp SCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEE
Confidence 589999999999999999 99999999999998742 34899999999999999999999997 445555
Q ss_pred eecCC
Q 046599 69 SHNSR 73 (131)
Q Consensus 69 ~~~~~ 73 (131)
..+.+
T Consensus 96 ~~a~~ 100 (111)
T 2cpi_A 96 SLGTT 100 (111)
T ss_dssp ESCCC
T ss_pred Eeccc
Confidence 54443
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1.6e-18 Score=102.33 Aligned_cols=68 Identities=28% Similarity=0.556 Sum_probs=59.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEe
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELS 69 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~ 69 (131)
++|||+|||+++++++|+++|++||.|..+.++. .++|||||+|.+.++|+.|++.||+.. +..|.+.
T Consensus 8 ~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp SEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 5899999999999999999999999999999864 258999999999999999999999997 4444443
No 63
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=108.56 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=61.2
Q ss_pred ceEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCC----c--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSR-VSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK----N--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~----~--~~~v~~~~~~~ 73 (131)
++|||+|||++ +|+++|+++|++||.|..|.|+. .+|||||+|++.++|+.||+.|++. . .|.|+++....
T Consensus 26 ~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 26 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp CEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred CEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 58999999998 99999999999999999999874 5899999999999999999988643 2 56777765443
No 64
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=104.58 Aligned_cols=72 Identities=15% Similarity=0.477 Sum_probs=61.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|..+.|+. .++|||||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 5899999999999999999999999999999874 346899999999999999999999986 44444444443
No 65
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=2.9e-18 Score=102.57 Aligned_cols=69 Identities=28% Similarity=0.525 Sum_probs=59.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSRG 74 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~~ 74 (131)
++|||+|||+++|+++|+++|++||.|..+.|+.+++|||||+|++.++|++ |++.. ++.|.+..+.+.
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 6899999999999999999999999999999998889999999999999883 55554 667777776553
No 66
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=106.75 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=63.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+.+|+++|+++|++||.|..|.|.. .++||||+|.+.++|+.||+.||+.. .|.|+++...
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 5899999999999999999999999999998874 58999999999999999999999986 5677777653
No 67
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=1.7e-18 Score=110.05 Aligned_cols=70 Identities=29% Similarity=0.394 Sum_probs=62.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcE-EEEEEcCHHHHHHHHHHhcCCc--c----eEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGY-AFIDFDDYRDAQDAIRELDGKN--G----WRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~-~fv~f~~~~~a~~ai~~l~g~~--~----~~v~~~~~ 71 (131)
..|||+||++.+|+++|+++|++||.|..|.|..+.++| |||+|.+.++|+.|++.|||.+ + ++|++++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 468999999999999999999999999999988777888 9999999999999999999997 3 45555554
No 68
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=3.5e-18 Score=103.26 Aligned_cols=70 Identities=29% Similarity=0.491 Sum_probs=61.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~ 71 (131)
++|||+|||.++++++|+++|++||.|..+.|.. .++|||||+|.+.++|++|++.||+.. + +.|+++..
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5899999999999999999999999999999874 348999999999999999999999986 4 45555443
No 69
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=2e-18 Score=112.28 Aligned_cols=71 Identities=55% Similarity=0.998 Sum_probs=64.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..+.|+.+++|||||+|.+.++|+.|++.||+.. .|+|+++.++
T Consensus 74 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 74 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999988889999999999999999999999986 5666666543
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=4e-18 Score=105.38 Aligned_cols=72 Identities=18% Similarity=0.416 Sum_probs=62.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+.+|+++|+++|++||.|..+.|+. .++|||||+|.+.++|+.|++.||+.. .+.|+++..+
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence 4799999999999999999999999999999864 347999999999999999999999986 4566666554
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
+
T Consensus 107 ~ 107 (110)
T 1oo0_B 107 G 107 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 71
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=104.16 Aligned_cols=70 Identities=31% Similarity=0.512 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEc-cCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVA-RRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~-~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|. +.++ ..++|||||+|.+.++|+.|++.||+.. .+.|+++..+
T Consensus 20 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 20 ADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 5899999999999999999999999986 4443 4678999999999999999999999986 5666666543
No 72
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.5e-18 Score=104.45 Aligned_cols=70 Identities=24% Similarity=0.400 Sum_probs=60.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
++|||+|||+++++++|+++|.+||.|..|.|+.+ +++||||+|.+.++|++||+.||+.. +..|.+..+
T Consensus 16 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 16 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 58999999999999999999999999999988743 46899999999999999999999987 444444443
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=105.70 Aligned_cols=72 Identities=31% Similarity=0.551 Sum_probs=61.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEE
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIR--------SVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRV 66 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~--------~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v 66 (131)
++|||+|||+++|+++|+++|++||.|. .|.|+. .++|||||+|.+.++|++||+.||+.. +..|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKL 95 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEE
Confidence 5899999999999999999999999998 577764 357999999999999999999999987 4444
Q ss_pred EEeecCC
Q 046599 67 ELSHNSR 73 (131)
Q Consensus 67 ~~~~~~~ 73 (131)
.|..+.+
T Consensus 96 ~V~~a~~ 102 (113)
T 2cpe_A 96 KVSLARK 102 (113)
T ss_dssp EEECSSC
T ss_pred EEEECCC
Confidence 4444443
No 74
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.7e-19 Score=104.15 Aligned_cols=70 Identities=27% Similarity=0.482 Sum_probs=59.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCCCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSRGG 75 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~~~ 75 (131)
++|||+|||+++|+++|+++|++||.|..+.|+.+++|||||+|.+.++|++| ++.. ++.|.+..+.+..
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCC
Confidence 58999999999999999999999999999999888899999999999999754 4432 6677777766543
No 75
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=102.86 Aligned_cols=71 Identities=32% Similarity=0.506 Sum_probs=61.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
++|||+|||+++++++|+++|++||.|..+.|+. .++|||||+|.+.++|++|++.||+.. +..|.+..++
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 5799999999999999999999999999999863 346899999999999999999999986 5555555543
No 76
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=6.9e-18 Score=102.38 Aligned_cols=66 Identities=33% Similarity=0.552 Sum_probs=59.3
Q ss_pred ceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEee
Q 046599 2 SRVYVGNLDS-RVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~ 70 (131)
++|||+|||+ ++++++|+++|++||.|..+.|. +|||||+|.+.++|++|++.||+.. + ++|+++.
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 6899999998 99999999999999999999985 8999999999999999999999986 4 4555544
No 77
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=105.35 Aligned_cols=61 Identities=28% Similarity=0.621 Sum_probs=56.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIR-SVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~-~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+++++++|+++|++||.|. .+.|+. .++|||||+|.+.++|++|++.||+..
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP 76 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc
Confidence 6899999999999999999999999999 998864 246899999999999999999999986
No 78
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.5e-18 Score=104.77 Aligned_cols=70 Identities=26% Similarity=0.364 Sum_probs=62.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
++|||+|||.++++++|+++|++||.|..+.+. ..+|||||+|.+.++|+.|+..||+.. +..|.+..++
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 589999999999999999999999999999987 458999999999999999999999987 5555555543
No 79
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=4.9e-19 Score=105.98 Aligned_cols=70 Identities=20% Similarity=0.341 Sum_probs=57.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFG--VIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G--~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~ 70 (131)
.+|||+|||+++|+++|+++|++|| .|..+.|+. .++|||||+|.+.++|++||+.||+.. + ++|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999998864 357899999999999999999999987 4 4555544
Q ss_pred c
Q 046599 71 N 71 (131)
Q Consensus 71 ~ 71 (131)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 80
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=101.83 Aligned_cols=69 Identities=33% Similarity=0.486 Sum_probs=60.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~ 70 (131)
++|||+|||+++++++|+++|++||.|..+.|+. .+++||||+|.+.++|++|++.||+.. +..|.+..
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 17 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp TSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 5899999999999999999999999999999964 357899999999999999999999986 44444443
No 81
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=9.6e-19 Score=106.71 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=60.8
Q ss_pred ceEEEcCCCC------CCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--c---eE
Q 046599 2 SRVYVGNLDS------RVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--G---WR 65 (131)
Q Consensus 2 ~~l~V~~L~~------~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~---~~ 65 (131)
++|||+|||+ ++++++|+++|++||.|..+.|+. .++|||||+|.+.++|++||+.||+.. + +.
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~ 86 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLF 86 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEE
Confidence 5899999999 999999999999999999999873 468999999999999999999999986 4 45
Q ss_pred EEEee
Q 046599 66 VELSH 70 (131)
Q Consensus 66 v~~~~ 70 (131)
|.++.
T Consensus 87 V~~a~ 91 (100)
T 3ns6_A 87 LYTMK 91 (100)
T ss_dssp EEESH
T ss_pred EEECc
Confidence 55443
No 82
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=104.99 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=61.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
.+|||+|||+++|+++|+++|++||.|..|.|+. .++|||||+|.+.++|++||. +++.. .+.|.++..
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 5899999999999999999999999999999874 468999999999999999999 88876 567766543
No 83
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=5.6e-18 Score=100.80 Aligned_cols=71 Identities=27% Similarity=0.551 Sum_probs=61.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
.+|||+|||+++++++|+++|++||.|..+.+.. .++|||||+|.+.++|++|+ .||+.. +..|.+..+++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 5899999999999999999999999999998864 35899999999999999999 899987 55555555443
No 84
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=5.2e-18 Score=104.87 Aligned_cols=69 Identities=29% Similarity=0.551 Sum_probs=61.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|..+.|. +|||||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 32 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 32 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp SEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 589999999999999999999999999999987 8999999999999999999999987 44444444433
No 85
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=3.8e-18 Score=112.73 Aligned_cols=72 Identities=18% Similarity=0.429 Sum_probs=63.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+.||+.. .|.|.++..+
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 47999999999999999999999999999998743 47999999999999999999999986 4566666554
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
+
T Consensus 153 ~ 153 (165)
T 1rk8_A 153 G 153 (165)
T ss_dssp C
T ss_pred C
Confidence 4
No 86
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=6.4e-18 Score=101.78 Aligned_cols=70 Identities=30% Similarity=0.479 Sum_probs=61.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.+|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|++.||+.. +..|.+..+
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 58999999999999999999999999999998743 47899999999999999999999987 444444443
No 87
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=105.70 Aligned_cols=73 Identities=30% Similarity=0.393 Sum_probs=61.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEc-cCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVI----RSVWVA-RRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i----~~~~i~-~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|.+||.| ..+.+. ..++|||||+|.+.++|+.||+.||+.. .|.|+++...
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 26 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 105 (115)
T ss_dssp SEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCC
Confidence 589999999999999999999999988 455544 4578999999999999999999999986 5666666654
Q ss_pred CC
Q 046599 73 RG 74 (131)
Q Consensus 73 ~~ 74 (131)
..
T Consensus 106 ~~ 107 (115)
T 2cpx_A 106 KQ 107 (115)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 88
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=103.29 Aligned_cols=72 Identities=24% Similarity=0.452 Sum_probs=57.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEE-ccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWV-ARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|++||.|.-+.. ....+|||||+|.+.++|++||+.||+.. +..|.|..+.+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 58999999999999999999999998732211 12468999999999999999999999986 44444444433
No 89
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=4.8e-18 Score=104.46 Aligned_cols=68 Identities=29% Similarity=0.480 Sum_probs=60.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEe
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELS 69 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~ 69 (131)
++|||+|||+.+|+++|+++|.+||.|..+.|+. .++|||||+|.+.++|++||+.||+.. .|+|+++
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 5899999999999999999999999999998874 357899999999999999999999997 4455554
No 90
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=9.1e-18 Score=102.67 Aligned_cols=69 Identities=29% Similarity=0.587 Sum_probs=59.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~ 72 (131)
.+|||+|||+++++++|+++|++|| |..|.|+. .++|||||+|.+.++|++|| .||+.. + |+|+++...
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence 5899999999999999999999997 99998874 34789999999999999999 899986 4 455555443
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=103.78 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=60.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEccC----CCcEEEEEEcCHHHHHHHHHHhcCCc-----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRV-FGVIRSVWVARR----PPGYAFIDFDDYRDAQDAIRELDGKN-----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~-~G~i~~~~i~~~----~~g~~fv~f~~~~~a~~ai~~l~g~~-----~~~v~~~~~ 71 (131)
++|||+|||+++|+++|+++|++ ||.|..+.|+.+ ++|||||+|.+.++|++||+.||+.. .|.|+++..
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 58999999999999999999999 999999998643 57899999999999999999999854 345555443
No 92
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=107.15 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=61.9
Q ss_pred ceEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEcc--CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLE----DEFRVFGVIRSVWVAR--RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~----~~f~~~G~i~~~~i~~--~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||+.+++++|+ ++|++||.|..|.+.. .++|||||+|.+.++|+.|++.||+.. .|+|+++..
T Consensus 30 ~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 30 QVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 589999999999999876 6999999999998863 578999999999999999999999987 566766654
Q ss_pred C
Q 046599 72 S 72 (131)
Q Consensus 72 ~ 72 (131)
+
T Consensus 110 ~ 110 (127)
T 2a3j_A 110 P 110 (127)
T ss_dssp C
T ss_pred c
Confidence 3
No 93
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=4.1e-18 Score=108.49 Aligned_cols=70 Identities=31% Similarity=0.482 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||+++++++|+++|++||.|..|.|+. ..+|||||+|.+.++|++||+.||+.. .|.|+++..
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5799999999999999999999999999999863 468999999999999999999999986 455555544
No 94
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=104.83 Aligned_cols=70 Identities=30% Similarity=0.469 Sum_probs=61.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc---CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR---RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~ 71 (131)
++|||+|||.++|+++|+++|++||.|..+.|.. .++|||||+|.+.++|++|++.||+.. + +.|+++..
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5899999999999999999999999999999974 358999999999999999999999986 4 45555443
No 95
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=104.47 Aligned_cols=72 Identities=21% Similarity=0.457 Sum_probs=61.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSRG 74 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~~ 74 (131)
++|||+|||+++|+++|+++|.+||.|..|.|+. .++|||||+|.+.++|++||+. ++.. +..|.|..+.+.
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 5899999999999999999999999999999874 3579999999999999999987 7665 555555555444
No 96
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=9.5e-19 Score=104.51 Aligned_cols=71 Identities=27% Similarity=0.533 Sum_probs=61.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 1 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
|++|||+|||+++++++|+++|++||.|..+.+.. .++|||||+|.+.+ |+.|+..||+.. .++|+++..
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999999973 45899999999999 999999999986 566666654
Q ss_pred C
Q 046599 72 S 72 (131)
Q Consensus 72 ~ 72 (131)
.
T Consensus 80 ~ 80 (90)
T 2ki2_A 80 K 80 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 97
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=8.7e-18 Score=102.05 Aligned_cols=68 Identities=28% Similarity=0.483 Sum_probs=60.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ce
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRS--------VWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GW 64 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~--------~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~ 64 (131)
++|||+|||+++++++|+++|++||.|.. +.|+. .++|||||+|.+.++|++|++.||+.. .+
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 93 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 93 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 68999999999999999999999999998 88764 347899999999999999999999987 45
Q ss_pred EEEEe
Q 046599 65 RVELS 69 (131)
Q Consensus 65 ~v~~~ 69 (131)
+|+++
T Consensus 94 ~V~~A 98 (99)
T 2la6_A 94 KVSFA 98 (99)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 66554
No 98
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-18 Score=104.85 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=61.3
Q ss_pred ceEEE--cCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCcc---------eEEEEee
Q 046599 2 SRVYV--GNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKNG---------WRVELSH 70 (131)
Q Consensus 2 ~~l~V--~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~~---------~~v~~~~ 70 (131)
.+||| +||++++|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++|++.||+.+. +.|.++.
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 47999 77999999999999999999999998864 489999999999999999999999842 5566655
Q ss_pred cCC
Q 046599 71 NSR 73 (131)
Q Consensus 71 ~~~ 73 (131)
..+
T Consensus 105 ~~p 107 (114)
T 2cq2_A 105 KVQ 107 (114)
T ss_dssp CCC
T ss_pred cCc
Confidence 444
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.7e-18 Score=99.70 Aligned_cols=60 Identities=33% Similarity=0.542 Sum_probs=56.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHh-cCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIREL-DGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l-~g~~ 62 (131)
++|||+|||+++++++|+++|++||.|..+.+... +|||||+|.+.++|+.|++.| ++..
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-kg~afV~f~~~~~A~~a~~~l~~~~~ 73 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-QQCAFIQFATRQAAEVAAEKSFNKLI 73 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHTTTTTCE
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-CCEEEEEECCHHHHHHHHHHhcCCee
Confidence 58999999999999999999999999999998854 799999999999999999998 7765
No 100
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.3e-17 Score=105.38 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=60.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcE-EEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecCC
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGY-AFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNSR 73 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~-~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~~ 73 (131)
.|||+||++.+|+++|+++|++||.|..|.|..+ .|| |||+|.+.++|+.|++.|||.+ + ..|.|..+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 5789999999999999999999999999998765 596 9999999999999999999997 2 3455554443
No 101
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.3e-18 Score=102.56 Aligned_cols=71 Identities=21% Similarity=0.364 Sum_probs=56.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEc--cCCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVA--RRPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~--~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|+.|+.|..+... ..++|||||+|.+.++|++||+.||+.. + |.|+++.++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 16 KTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp SSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 589999999999999999999988644333221 2347899999999999999999999987 4 455555443
No 102
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=103.71 Aligned_cols=71 Identities=31% Similarity=0.586 Sum_probs=62.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+.+++++|+++|++||.|..+.|+.+ ++|||||+|.+.++|+.|++.||+.. .+.|+++...
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 58999999999999999999999999999988643 47999999999999999999999986 4566665543
No 103
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=103.89 Aligned_cols=70 Identities=34% Similarity=0.555 Sum_probs=61.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||+.+++++|+++|++||.|..+.|+. .++|||||+|.+.++|+.|++.||+.. .|.|+++..
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 5899999999999999999999999999999864 347899999999999999999999986 455655544
No 104
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=9.2e-18 Score=105.79 Aligned_cols=71 Identities=30% Similarity=0.565 Sum_probs=60.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
.+|||+|||+++|+++|+++|++||.|..|.|+. .++|||||+|.+.++|++|| .||+.. +..|.|..++.
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 5899999999999999999999999999998863 35899999999999999999 799986 44444444433
No 105
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=7.1e-18 Score=105.46 Aligned_cols=61 Identities=26% Similarity=0.440 Sum_probs=57.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+++++++|+++|++||.|..+.|+. .++|||||+|.+.++|+.|++.||+..
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 5899999999999999999999999999999974 358999999999999999999999986
No 106
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=104.06 Aligned_cols=69 Identities=32% Similarity=0.511 Sum_probs=60.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
.+|||+|||+++++++|+++|.+||.|..|.|+. .++|||||+|.+.++|++|| .||+.. .|.|+++..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4899999999999999999999999999999973 46899999999999999999 899986 445555543
No 107
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-18 Score=103.22 Aligned_cols=72 Identities=26% Similarity=0.377 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+.+++++|+++|++||.|..+.....++|||||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 5899999999999999999999999888774344568999999999999999999999986 44455544433
No 108
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=103.61 Aligned_cols=67 Identities=25% Similarity=0.261 Sum_probs=55.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~ 70 (131)
.+|||+|||+++|+++|+++|++||.+ .|.|+. .++|||||+|.+.++|++||+ +|+.. .|+|.++.
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 489999999999999999999999954 888763 357899999999999999995 78876 34554444
No 109
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=103.21 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEcc------CCCcEEEEEEcCHHHHHHHHHHhc--CCc----ceEEEE
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGV-IRSVWVAR------RPPGYAFIDFDDYRDAQDAIRELD--GKN----GWRVEL 68 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~-i~~~~i~~------~~~g~~fv~f~~~~~a~~ai~~l~--g~~----~~~v~~ 68 (131)
++|||+|||+++|+++|+++|.+||. |..+.|+. .++|||||+|.+.++|+.|++.|+ +.. .++|++
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~ 88 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW 88 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEE
Confidence 58999999999999999999999998 99998872 468999999999999999999996 344 566666
Q ss_pred eecCC
Q 046599 69 SHNSR 73 (131)
Q Consensus 69 ~~~~~ 73 (131)
+.++.
T Consensus 89 a~~~~ 93 (109)
T 2dis_A 89 AEPEI 93 (109)
T ss_dssp SCSSC
T ss_pred cCCCC
Confidence 65543
No 110
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=2.5e-17 Score=103.91 Aligned_cols=71 Identities=28% Similarity=0.458 Sum_probs=62.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+.+++++|+++|++||.|..|.|.. .++|||||+|.+.++|++|++.||+.. .++|+++...
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 5899999999999999999999999999999874 368999999999999999999999986 4556665543
No 111
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=1.1e-17 Score=110.05 Aligned_cols=70 Identities=29% Similarity=0.338 Sum_probs=61.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-CCcEEEEEEcCHHHHHHHHHHhcCCc------ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-PPGYAFIDFDDYRDAQDAIRELDGKN------GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~g~~fv~f~~~~~a~~ai~~l~g~~------~~~v~~~~~ 71 (131)
.+|||+||++.+|+++|+++|++||.|..|.|..+ .++||||+|++.++|+.|++.|||.+ .|+|++++.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 47999999999999999999999999999998643 57899999999999999999999986 345555554
No 112
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=103.19 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=58.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~ 70 (131)
++|||+|||+++++++|+++|.+||.|..+.++. .++|||||+|.+.++|++||+.||+.. + |+|+++.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 5799999999999999999999999987655442 357999999999999999999999986 4 4555544
No 113
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.2e-18 Score=101.15 Aligned_cols=61 Identities=30% Similarity=0.483 Sum_probs=56.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+++++++|+++|++||.|..+.|+. .++|||||+|.+.++|+.|++.||+..
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 5899999999999999999999999999999864 358999999999999999999999886
No 114
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=4.7e-18 Score=99.73 Aligned_cols=61 Identities=25% Similarity=0.432 Sum_probs=56.5
Q ss_pred ceEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEcc---CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRV------SERDLEDEFRVFGVIRSVWVAR---RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~------t~~~l~~~f~~~G~i~~~~i~~---~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+.+ ++++|+++|++||.|..+.|.. .++|||||+|.+.++|++|++.||+..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 589999999999 7899999999999999999873 468999999999999999999999986
No 115
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=1.2e-17 Score=100.97 Aligned_cols=70 Identities=27% Similarity=0.575 Sum_probs=61.2
Q ss_pred ceEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEcc--CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLE----DEFRVFGVIRSVWVAR--RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~----~~f~~~G~i~~~~i~~--~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~ 71 (131)
++|||+|||+++++++|+ ++|++||.|..+.+.. .++|||||+|.+.++|+.|++.||+.. + +.|+++..
T Consensus 9 ~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 9 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 589999999999999999 9999999999998863 457999999999999999999999986 4 45555443
No 116
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=110.15 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=60.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFG--VIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G--~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
++|||+|||+++|+++|+++|++|| .|..|.|+. .++|||||+|.+.++|++||+.||+.. +..|.|..+
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 4899999999999999999999999 999999863 357899999999999999999999997 444444443
No 117
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=2.6e-17 Score=102.47 Aligned_cols=70 Identities=27% Similarity=0.463 Sum_probs=62.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc--CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR--RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~--~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||+.+|+++|+++|++||.|..+.|+. ..+|||||+|.+.++|++|++.||+.. .+.|+++.+
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 9 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 5899999999999999999999999999999864 457999999999999999999999987 566666654
No 118
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.9e-17 Score=112.97 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=63.2
Q ss_pred ceEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLD-SRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~-~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+||| +.+|+++|+++|++||.|..|.|+.+.+|||||+|.+.++|+.||+.||+.. .|.|.++..
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 589999999 8999999999999999999999988778999999999999999999999997 455555543
No 119
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=9.7e-18 Score=107.50 Aligned_cols=72 Identities=35% Similarity=0.634 Sum_probs=63.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..|.|+. .++|||||+|.+.++|++||+.||+.. .|+|+++...
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 5899999999999999999999999999999863 468999999999999999999999986 5666666554
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
.
T Consensus 128 ~ 128 (135)
T 2lea_A 128 R 128 (135)
T ss_dssp C
T ss_pred C
Confidence 3
No 120
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=102.67 Aligned_cols=72 Identities=17% Similarity=0.396 Sum_probs=61.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSRG 74 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~~ 74 (131)
++|||+|||+++++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++||+. ++.. +..|.|..+.+.
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence 58999999999999999999999999999998753 468999999999999999998 7775 556666665544
No 121
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=5e-18 Score=102.25 Aligned_cols=70 Identities=26% Similarity=0.364 Sum_probs=59.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
++|||+|||+++|+++|+++|.+||.|..+.++. .++|||||+|.+.++|++||+.||+.. +..|.+..+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 5899999999999999999999999988665543 357999999999999999999999987 444444443
No 122
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.2e-17 Score=97.40 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=59.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|| ++|+++|+++|.+||.|..|.|. ..+|||||+|.+.++|++||+.||+.. +..|.+..+.+
T Consensus 16 ~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 16 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp SEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 58999996 89999999999999999999985 568999999999999999999999986 44555555444
No 123
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=9.4e-18 Score=102.22 Aligned_cols=68 Identities=25% Similarity=0.524 Sum_probs=59.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC------CCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR------PPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~------~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||+++++++|+++|++|| |..+.|+.+ ++|||||+|.+.++|++|| .||+.. .+.|+++..
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 5899999999999999999999999 999998643 4899999999999999999 899987 445555543
No 124
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=101.72 Aligned_cols=71 Identities=21% Similarity=0.351 Sum_probs=62.0
Q ss_pred ceEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEcc---CCCcEEEEEEcCHHHHHHHHHHhcCCc--ce-EEEEe
Q 046599 2 SRVYVGNLDSRV------SERDLEDEFRVFGVIRSVWVAR---RPPGYAFIDFDDYRDAQDAIRELDGKN--GW-RVELS 69 (131)
Q Consensus 2 ~~l~V~~L~~~~------t~~~l~~~f~~~G~i~~~~i~~---~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~-~v~~~ 69 (131)
++|||+|||+.+ |+++|+++|++||.|..+.|+. .++|||||+|.+.++|+.||..||+.. +. .|.+.
T Consensus 16 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~ 95 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 95 (105)
T ss_dssp SEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEE
T ss_pred CEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEE
Confidence 589999999999 8899999999999999999873 468999999999999999999999986 54 56665
Q ss_pred ecC
Q 046599 70 HNS 72 (131)
Q Consensus 70 ~~~ 72 (131)
.+.
T Consensus 96 ~a~ 98 (105)
T 2nlw_A 96 LFT 98 (105)
T ss_dssp CSC
T ss_pred Ecc
Confidence 554
No 125
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=98.42 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=57.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
.+|||+|||+++|+++|+++|.+||.|..|.+......||||+|.+.++|++||+ ||+.. +..|.+..+.
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 5899999999999999999999999999983332211299999999999999999 99987 5555555443
No 126
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=101.68 Aligned_cols=61 Identities=25% Similarity=0.501 Sum_probs=56.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC----CCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR----PPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~----~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+++|+++|+++|.+||.|..+.|+.+ ++|||||+|.+.++|+.||+.||+..
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 58999999999999999999999999999998743 47899999999999999999999985
No 127
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=9.7e-18 Score=106.85 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=59.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeE--EEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCC----c----ceEE
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRS--VWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGK----N----GWRV 66 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~--~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~----~----~~~v 66 (131)
++|||+|||+++|+++|+++|.+||.|.. |.|+. .++|||||+|.+. +|++||..||+. . .|.|
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V 102 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINV 102 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEE
Confidence 58999999999999999999999999966 88864 3589999999999 999999999998 5 4556
Q ss_pred EEeec
Q 046599 67 ELSHN 71 (131)
Q Consensus 67 ~~~~~ 71 (131)
+++..
T Consensus 103 ~~a~~ 107 (131)
T 2m2b_A 103 EFAKG 107 (131)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 65554
No 128
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=1.3e-17 Score=96.36 Aligned_cols=59 Identities=19% Similarity=0.443 Sum_probs=54.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
+|||+|||+++++++|+++|++||.|..+.++. .++|||||+|.+.++|++|++ ||+..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~ 64 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE 64 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE
Confidence 599999999999999999999999999998864 357999999999999999998 88876
No 129
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=100.24 Aligned_cols=72 Identities=22% Similarity=0.402 Sum_probs=58.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCcceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKNGWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~~~~v~~~~~~~ 73 (131)
++|||+|||+++++++|+++|.+||.|..|.|+. .++|||||+|.+.++|++||+.++...+..|.+..+.+
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 16 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 5899999999999999999999999999999864 34689999999999999999853222344444444443
No 130
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.5e-17 Score=98.98 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=59.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|++|++.||+.. +..|.+..+
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 589999999999999999999999 99999885 568999999999999999999999986 444444444
No 131
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=4.2e-17 Score=106.66 Aligned_cols=71 Identities=32% Similarity=0.602 Sum_probs=61.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..+.|+. .++|||||+|.+.++|+.||+.||+.. +..|.+..+.
T Consensus 71 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 71 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5899999999999999999999999999999864 368999999999999999999999986 4444444443
No 132
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-17 Score=99.25 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=57.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRS-VWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~-~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~ 70 (131)
.+|||+|||+++|+++|+++|.+||.|.. |.|+. .++|||||+|.+.++|++||+. |+.. .+.|..+.
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECC
Confidence 58999999999999999999999999987 77753 4689999999999999999997 7765 34555544
No 133
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=97.14 Aligned_cols=67 Identities=19% Similarity=0.479 Sum_probs=58.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEe
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELS 69 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~ 69 (131)
++|||+|||+++++++|+++|++||.|..+.++. .++|||||+|.+.++|++|++.++ .. .+.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999998864 357999999999999999999888 54 4455543
No 134
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=97.83 Aligned_cols=70 Identities=17% Similarity=0.354 Sum_probs=59.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
.+|||+|||+++++++|+++|++| .|..+.|+. .++|||||+|.+.++|++||+ ||+.. +..|.+..+.+
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred cEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 589999999999999999999999 899998864 347899999999999999999 99986 44555555443
No 135
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.3e-17 Score=115.58 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=61.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFG--VIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G--~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~ 70 (131)
++|||+|||+++|+++|+++|.+|| .|..|.|+. .++|||||+|.+.++|++||+.||+.. .|+|+++.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 5899999999999999999999999 999999864 357999999999999999999999986 56777654
No 136
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=4.9e-17 Score=100.57 Aligned_cols=70 Identities=19% Similarity=0.440 Sum_probs=58.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
++|||+|||+++|+++|+++|++||.|..|.|+. .++|||||+|.+.++|++||+.++ .. +..|.+..+.
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 102 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEcc
Confidence 5899999999999999999999999999999974 358999999999999999999764 43 4444444443
No 137
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=6.2e-19 Score=110.11 Aligned_cols=72 Identities=26% Similarity=0.453 Sum_probs=61.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ce
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRS--------VWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN----GW 64 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~--------~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~ 64 (131)
++|||+|||+++++++|+++|++||.|.. +.|+. .++|||||+|.+.++|++||+.||+.. .|
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 87 (116)
Confidence 58999999999999999999999999988 76653 357999999999999999999999986 45
Q ss_pred EEEEeecCC
Q 046599 65 RVELSHNSR 73 (131)
Q Consensus 65 ~v~~~~~~~ 73 (131)
.|+++..++
T Consensus 88 ~V~~a~~~~ 96 (116)
T 2lcw_A 88 KVSFATRRA 96 (116)
Confidence 555555444
No 138
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=8.2e-18 Score=102.47 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=57.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEc----cCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVA----RRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~----~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
.+|||+|||+++|+++|+++|++||.|..+.+. ..++|||||+|.+.++|++||+ ||+.. .|.|+++..
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 489999999999999999999999987662221 3578999999999999999998 99987 455555554
No 139
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=6.2e-17 Score=95.96 Aligned_cols=68 Identities=25% Similarity=0.504 Sum_probs=57.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~ 70 (131)
++|||+|||+++++++|+++|++||.|..+.|+. .++|||||+|.+.++|++|++. ++.. +..|.+..
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 5899999999999999999999999999999864 3478999999999999999964 5554 44555443
No 140
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=103.98 Aligned_cols=68 Identities=28% Similarity=0.556 Sum_probs=60.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEe
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELS 69 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~ 69 (131)
.+|||+|||+.+++++|+++|++||.|..+.|+. .++|||||+|.+.++|++|++.||+.. +..|.+.
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 5899999999999999999999999999999864 368999999999999999999999976 4444443
No 141
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=6e-17 Score=108.24 Aligned_cols=70 Identities=29% Similarity=0.463 Sum_probs=63.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||+.+++++|+++|++||.|..|.|+. .++|||||+|.+.++|++||+.||+.. .|+|+++..
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5899999999999999999999999999999974 467999999999999999999999986 567777654
No 142
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=99.76 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=59.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
.+|||+|||+++|+++|+++|++| .|..|.|+. .++|||||+|.+.++|++|| .||+.. +..|+|..+.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 479999999999999999999999 899999873 46899999999999999999 588876 5566665553
No 143
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=7e-18 Score=108.67 Aligned_cols=68 Identities=25% Similarity=0.258 Sum_probs=57.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.+|||+|||+++|+++|+++|++|| |..|.|+. .++|||||+|++.++|++|| .+|+.. +..|+|..+
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4799999999999999999999999 67888864 46899999999999999999 688876 334444433
No 144
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=7e-17 Score=95.60 Aligned_cols=66 Identities=26% Similarity=0.530 Sum_probs=59.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEE
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVF----G-------VIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVEL 68 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~ 68 (131)
.+|||+|||+++++++|+++|++| | .|..+.+... +|||||+|.+.++|++|+ .||+.. +..|.+
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 84 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 84 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEE
Confidence 589999999999999999999999 8 8999998754 899999999999999999 999987 555555
Q ss_pred e
Q 046599 69 S 69 (131)
Q Consensus 69 ~ 69 (131)
.
T Consensus 85 ~ 85 (87)
T 2hzc_A 85 R 85 (87)
T ss_dssp E
T ss_pred e
Confidence 4
No 145
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=101.21 Aligned_cols=60 Identities=30% Similarity=0.527 Sum_probs=53.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc--------CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR--------RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~--------~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+++|+++|+++|++||.|. +.++. .++|||||+|.+.++|++||+.|++..
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~ 76 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEED 76 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEET
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcC
Confidence 5899999999999999999999999999 66652 458999999999999999999995444
No 146
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=3.5e-17 Score=102.59 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=59.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGV---IRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~---i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.+|||+|||+++|+++|+++|+.||. |..|.|+. .++|||||+|.+.++|++||+ ||+.. +..|+|..+
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKS 95 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEEC
Confidence 57999999999999999999999998 88888863 357899999999999999999 99876 445555443
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=95.77 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=60.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEccC-CCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSV-WVARR-PPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~-~i~~~-~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||+++++++|+++|.+||.|..+ .|+.+ ..+.|||+|.+.++|+.|++.||+.. .+.|+++..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 579999999999999999999999999999 46543 34569999999999999999999987 456665554
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1.5e-16 Score=108.79 Aligned_cols=62 Identities=35% Similarity=0.590 Sum_probs=57.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 1 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
+++|||+|||+++|+++|+++|++||+|..|.|+. .++|||||+|.+.++|++||+.||+..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~ 81 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV 81 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh
Confidence 46899999999999999999999999999999874 357899999999999999999999986
No 149
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.1e-17 Score=100.82 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=58.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVI-RSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i-~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.+|||+|||+++|+++|+++|++||.| ..|.|+. .++|||||+|.+.++|++||+. |+.. +..|.|..+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 589999999999999999999999999 7788863 4689999999999999999986 7765 444444443
No 150
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=3.4e-17 Score=105.10 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=59.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGV---IRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~---i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
++|||+|||+++|+++|+++|++||. |..|.|+. .++|||||+|.+.++|++||+ ||+.. +..|+|..+
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 57999999999999999999999998 78888863 457899999999999999999 99886 555555544
No 151
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=2.7e-16 Score=99.02 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=60.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~~ 73 (131)
++|||+|| ++|+++|+++|++||.|..|.|. ..+|||||+|.+.++|++||+.||+.. .+.|+++..++
T Consensus 40 ~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 40 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 58999996 69999999999999999999886 568999999999999999999999987 56666665543
No 152
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=94.05 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=55.5
Q ss_pred eEEEcCCCCCCcHHH----HHHHhhcCC-CeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 3 RVYVGNLDSRVSERD----LEDEFRVFG-VIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~----l~~~f~~~G-~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
.|||+|||+.+++++ |+++|++|| +|.+|. .|+|||.|.+.++|++|++.||+.+ .++|+++...
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 499999999999987 568999995 999982 4999999999999999999999997 4556555543
No 153
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-17 Score=104.07 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=57.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEc----cCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSV-WVA----RRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~-~i~----~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~ 70 (131)
.+|||+|||+++|+++|+++|.+||.|..+ .+. ..++|||||+|.+.++|++||+ ||+.. .|.|.++.
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 589999999999999999999999998763 332 2457999999999999999999 99886 45666554
No 154
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=4.6e-17 Score=93.89 Aligned_cols=59 Identities=22% Similarity=0.514 Sum_probs=53.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
+|||+|||+++++++|+++|++||.|..+.++. .++|||||+|.+.++|++|++. ++..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~ 64 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN 64 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe
Confidence 699999999999999999999999999998863 4589999999999999999984 6554
No 155
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=102.26 Aligned_cols=70 Identities=31% Similarity=0.487 Sum_probs=58.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEc--cCCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEE
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRS--------VWVA--RRPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVE 67 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~--------~~i~--~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~ 67 (131)
++|||+|||+++|+++|+++|++||.|.. +.+. ..++|||||+|.+.++|++||..||+.. + |.|+
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 125 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQ 125 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 58999999999999999999999998865 3332 3578999999999999999999999987 4 4555
Q ss_pred Eeec
Q 046599 68 LSHN 71 (131)
Q Consensus 68 ~~~~ 71 (131)
++..
T Consensus 126 ~a~~ 129 (143)
T 3egn_A 126 FARS 129 (143)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 5543
No 156
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.67 E-value=2.2e-16 Score=109.77 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=61.4
Q ss_pred ceEEEcCCCCCC---------cHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCcc---------
Q 046599 2 SRVYVGNLDSRV---------SERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKNG--------- 63 (131)
Q Consensus 2 ~~l~V~~L~~~~---------t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~~--------- 63 (131)
.+|||+||+..+ ++++|+++|++||+|..|.|+. .+|||||+|.+.++|+.|++.|++...
T Consensus 135 rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~ 213 (240)
T 3u1l_A 135 KTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWD 213 (240)
T ss_dssp CEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGG
T ss_pred ceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEecccccccc
Confidence 589999999998 7999999999999999999875 489999999999999999999998753
Q ss_pred -------eEEEEeecCCC
Q 046599 64 -------WRVELSHNSRG 74 (131)
Q Consensus 64 -------~~v~~~~~~~~ 74 (131)
|.|.++...+.
T Consensus 214 ~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 214 DRREGTGLLVKWANEDPD 231 (240)
T ss_dssp GGGGSCCCEEEECC----
T ss_pred ccCCCCEEEEEEccCCCC
Confidence 67777765543
No 157
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=7.2e-17 Score=99.42 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=54.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGV---IRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~---i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
.+|||+|||+++|+++|+++|+.||. |..|.|+. .++|||||+|.+.++|++||+ ||+..
T Consensus 12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp CEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 58999999999999999999999998 88888863 468999999999999999999 88876
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=4.1e-16 Score=106.58 Aligned_cols=71 Identities=28% Similarity=0.508 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc---CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR---RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~---~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
.+|||+|||+.+|+++|+++|++||.|..+.|+. .++|||||+|.+.++|++||+.||+.. +..|.|..+.
T Consensus 104 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 104 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 4799999999999999999999999999999874 257899999999999999999999997 4455554443
No 159
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=9.1e-16 Score=105.94 Aligned_cols=70 Identities=30% Similarity=0.397 Sum_probs=63.2
Q ss_pred ceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDS-RVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||+ ++++++|+++|++||.|..|.|+.+.+|||||+|.+.++|++|++.||+.. .+.|+++..
T Consensus 35 ~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 35 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp SEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5899999999 999999999999999999999988778999999999999999999999986 456665554
No 160
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=100.80 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=57.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVI----RSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i----~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.+|||+|||+++|+++|+++|++||.| ..|.|+. .++|||||+|.+.++|++||+. |+.. +..|+|..+
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRS 102 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEEC
Confidence 589999999999999999999999975 5777753 3579999999999999999985 7665 455555544
No 161
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=2.1e-15 Score=98.43 Aligned_cols=70 Identities=26% Similarity=0.458 Sum_probs=60.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
++|||+|||+++|+++|+++|++||.|..+.++.+ ++|||||+|.+.++|+.|++.|++.. +..|.+..+
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 68999999999999999999999999999998643 35899999999999999999999986 444444443
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=1.7e-15 Score=102.99 Aligned_cols=72 Identities=29% Similarity=0.550 Sum_probs=63.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
.+|||+|||.++|+++|+++|++||.|..+.|..+ ++|||||+|.+.++|++|++.||+.. .|.|.++...
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred cEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 58999999999999999999999999999998743 47899999999999999999999987 4566665554
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
+
T Consensus 206 ~ 206 (216)
T 2qfj_A 206 P 206 (216)
T ss_dssp S
T ss_pred C
Confidence 3
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=1.8e-15 Score=99.05 Aligned_cols=71 Identities=32% Similarity=0.531 Sum_probs=61.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|+.|++.|++.. +..|.+..+.
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 58999999999999999999999999999998742 46899999999999999999999986 4444444443
No 164
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=4.1e-16 Score=95.01 Aligned_cols=68 Identities=25% Similarity=0.517 Sum_probs=57.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~~ 71 (131)
++|||+|||+++++++|+++|++||.|..+.|+. .++|||||+|.+.++|++|++ ++.. + +.|..+..
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 5899999999999999999999999999999874 257999999999999999998 5544 3 44444443
No 165
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=9.5e-16 Score=103.27 Aligned_cols=71 Identities=30% Similarity=0.393 Sum_probs=64.1
Q ss_pred ceEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeecC
Q 046599 2 SRVYVGNLDS-RVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~~ 72 (131)
++|||+|||+ ++++++|+++|++||.|..|.++.+.+|||||+|.+.++|+.|++.||+.. .+.|+++...
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 5899999999 999999999999999999999987778999999999999999999999986 5666666543
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.2e-15 Score=102.32 Aligned_cols=72 Identities=22% Similarity=0.472 Sum_probs=59.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSRG 74 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~~ 74 (131)
.+|||+|||+++|+++|+++|++||.|..+.|+.+ ++|||||+|.+.++|++||.. ++.. +..|.+..+.+.
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 58999999999999999999999999999988743 478999999999999999985 6655 445555544443
No 167
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.6e-15 Score=99.84 Aligned_cols=61 Identities=26% Similarity=0.497 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-------CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-------RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-------~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
.+|||+|||+++|+++|+++|++||.|..+.|+. .++|||||+|.+.++|++|++.|++..
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 71 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMK 71 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcE
Confidence 5899999999999999999999999999998863 357899999999999999999999875
No 168
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=6e-15 Score=89.87 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=55.1
Q ss_pred CCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 11 SRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 11 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
..+++++|+++|++||.|..|.|+..++|||||+|++.++|+.||+.+++.. .|+|+++..++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEccCCC
Confidence 5689999999999999999999988889999999999999999999877765 56777765544
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.5e-15 Score=99.03 Aligned_cols=69 Identities=30% Similarity=0.546 Sum_probs=60.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~~ 70 (131)
.+|||+|||+++|+++|+++|++||.|..+.++. .++|||||+|.+.++|+.|++.|++.. + +.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 3799999999999999999999999999999864 357899999999999999999999997 4 4555443
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=2.4e-15 Score=102.26 Aligned_cols=61 Identities=30% Similarity=0.553 Sum_probs=57.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+++|+++|+++|++||.|..|.|+. .++|||||+|.+.++|++|++.||+..
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~ 94 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM 94 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe
Confidence 5899999999999999999999999999999964 368999999999999999999999986
No 171
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=2.1e-15 Score=101.21 Aligned_cols=72 Identities=19% Similarity=0.463 Sum_probs=62.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+.+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 115 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 115 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 58999999999999999999999999999998753 37899999999999999999999987 44555555443
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.4e-15 Score=98.07 Aligned_cols=70 Identities=27% Similarity=0.540 Sum_probs=61.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.+|||+|||+.+|+++|+++|++||.|..+.+.. .++|+|||+|.+.++|++|++.||+.. +..|.+..+
T Consensus 88 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 88 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp EEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4799999999999999999999999999998863 347899999999999999999999997 555555444
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=2.2e-15 Score=99.11 Aligned_cols=61 Identities=26% Similarity=0.516 Sum_probs=56.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC----CCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR----PPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~----~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
.+|||+|||+.+|+++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|++.||+..
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred CeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 47999999999999999999999999999998753 47899999999999999999999875
No 174
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=9e-16 Score=97.22 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=51.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCee--EEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIR--SVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~--~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
.+|||+|||+++|+++|+++|++| .|. .|.|+. .++|||||+|.+.++|++||+. ++..
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~ 107 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKER 107 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCE
Confidence 589999999999999999999999 576 788763 4689999999999999999985 5554
No 175
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=2.1e-15 Score=99.21 Aligned_cols=69 Identities=19% Similarity=0.484 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~ 70 (131)
.+|||+|||+.+|+++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|++.||+.. +..|.+..
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 58999999999999999999999999999998643 37899999999999999999999987 44444443
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=3.4e-15 Score=105.60 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc---ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN---GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~---~~~v~~~~~ 71 (131)
++|||+|||..+|+++|+++|++||.|..+.|+.+.+|||||+|.+.++|++|++.||+.. +..|.+.++
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 5799999999999999999999999999999987667999999999999999999999986 334444443
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=2.8e-15 Score=99.01 Aligned_cols=72 Identities=26% Similarity=0.377 Sum_probs=60.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
.+|||+|||+.+|+++|+++|++||.|..+.....++|||||+|.+.++|++|++.||+.. +..|.+..+.+
T Consensus 100 ~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 100 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 5899999999999999999999999988872234578999999999999999999999986 55555555443
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=5.9e-15 Score=96.31 Aligned_cols=61 Identities=30% Similarity=0.583 Sum_probs=56.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
.+|||+|||+.+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|++|++.||+..
T Consensus 89 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 89 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 47999999999999999999999999999988643 37899999999999999999999986
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=8.3e-15 Score=101.09 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=57.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFG-VIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+.+++++|+++|++|| .|..+.++.+.+|+|||+|.+.++|++|++.||+..
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~ 213 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHD 213 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCc
Confidence 5799999999999999999999999 999999976678999999999999999999999986
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=7e-15 Score=103.98 Aligned_cols=70 Identities=27% Similarity=0.570 Sum_probs=61.3
Q ss_pred ceEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEcc--CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLE----DEFRVFGVIRSVWVAR--RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~----~~f~~~G~i~~~~i~~--~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~~~ 71 (131)
++|||+|||+++|+++|+ ++|++||.|..|.|.. ..+|||||+|.+.++|+.||+.||+.. .|+|+++..
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 589999999999999976 8999999999999864 568999999999999999999999986 455665544
No 181
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=8e-15 Score=95.94 Aligned_cols=61 Identities=30% Similarity=0.548 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||..+++++|+++|++||.|..+.+..+ ++|+|||+|.+.++|++|++.||+..
T Consensus 90 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 90 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 155 (168)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE
Confidence 57999999999999999999999999999988643 36899999999999999999999986
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=2.6e-15 Score=98.25 Aligned_cols=70 Identities=16% Similarity=0.415 Sum_probs=59.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
.+|||+|||+++|+++|+++|++||.|..+.+.. .++|||||+|.+.++|++|++ +++.. +..|.+..+.
T Consensus 88 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 88 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 4799999999999999999999999999999864 357899999999999999998 77765 4444444443
No 183
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=2.6e-15 Score=102.36 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=55.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCe--eEEEEccC---CCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVI--RSVWVARR---PPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i--~~~~i~~~---~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
.+|||+|||+++|+++|+++|++||.| ..+.+..+ .+|+|||+|.+.++|.+||..||+.+
T Consensus 124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 379999999999999999999999998 88888642 46899999999999999999999986
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=5.8e-15 Score=99.38 Aligned_cols=69 Identities=25% Similarity=0.371 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc-----ceEEEEee
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFG-VIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN-----GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~-----~~~v~~~~ 70 (131)
++|||+|||+.+++++|+++|++|| .|..+.+..+.+|+|||+|.+.++|++|++.||+.. .+.|.++.
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4799999999999999999999999 999999977678999999999999999999999986 34555554
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.59 E-value=5.5e-15 Score=99.04 Aligned_cols=69 Identities=19% Similarity=0.473 Sum_probs=57.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccC-----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARR-----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~-----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+. ++.. +..|.+..+
T Consensus 14 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 58999999999999999999999999999998742 478999999999999999985 6654 444444433
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=4.8e-15 Score=100.20 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=58.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc-ceEEEEeec
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN-GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~-~~~v~~~~~ 71 (131)
.+|||+|||+++|+++|+++|++||.|..|.|.. .++|||||+|++.++|+.|++.++..- +..|.+...
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 184 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEET
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEh
Confidence 4799999999999999999999999999999874 357999999999999999998665422 444554443
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=8.6e-15 Score=102.88 Aligned_cols=60 Identities=33% Similarity=0.596 Sum_probs=56.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+++|+++|+++|++||.|..|.|.. .+|||||+|.+.++|+.|+..||+..
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-~kg~afV~f~~~~~A~~A~~~l~g~~ 82 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-DRGFGFIRLESRTLAEIAKAELDGTI 82 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCcEEEEEECCHHHHHHHHHHcCCcE
Confidence 5899999999999999999999999999999864 48999999999999999999999986
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=4.9e-15 Score=96.95 Aligned_cols=56 Identities=18% Similarity=0.596 Sum_probs=52.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcCHHHHHHHHHH
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDDYRDAQDAIRE 57 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~~~~a~~ai~~ 57 (131)
++|||+|||+++|+++|+++|++||.|..+.|+. .++|||||+|.+.++|++|++.
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 5899999999999999999999999999999864 3579999999999999999986
No 189
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.56 E-value=6e-15 Score=107.41 Aligned_cols=60 Identities=22% Similarity=0.385 Sum_probs=55.5
Q ss_pred ceEEEcC--CCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGN--LDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~--L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
.+|||+| |+..+|+++|+++|++||+|..|.+.. .+|||||+|++.++|++||+.|||.+
T Consensus 19 ~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 5899999 578999999999999999999988764 68999999999999999999999986
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=5.7e-14 Score=99.35 Aligned_cols=59 Identities=17% Similarity=0.369 Sum_probs=55.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
++|||+|||+++|+++|+++|++|| |..+.+ ..++|||||+|.+.++|+.|++.||+..
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~ 81 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSR 81 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCe
Confidence 5899999999999999999999999 999888 4568999999999999999999999986
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=4.4e-14 Score=92.79 Aligned_cols=69 Identities=25% Similarity=0.503 Sum_probs=58.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEE
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVF----G-------VIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVEL 68 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~ 68 (131)
.+|||+|||+++|+++|+++|++| | .|..+.+.. .+|||||+|.+.++|++|+ .||+.. +..|.+
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeee
Confidence 589999999999999999999999 6 777777653 5899999999999999999 799986 555555
Q ss_pred eecC
Q 046599 69 SHNS 72 (131)
Q Consensus 69 ~~~~ 72 (131)
..+.
T Consensus 83 ~~~~ 86 (172)
T 2g4b_A 83 RRPH 86 (172)
T ss_dssp ECCS
T ss_pred cCCc
Confidence 5443
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-13 Score=85.45 Aligned_cols=70 Identities=30% Similarity=0.423 Sum_probs=56.5
Q ss_pred ceEEEcCCCCCC-----------cHHHHHHHhhcCCCeeEEEEc-cCCCcEEEEEEcCHHHHHHHHHHhcCCc--c--eE
Q 046599 2 SRVYVGNLDSRV-----------SERDLEDEFRVFGVIRSVWVA-RRPPGYAFIDFDDYRDAQDAIRELDGKN--G--WR 65 (131)
Q Consensus 2 ~~l~V~~L~~~~-----------t~~~l~~~f~~~G~i~~~~i~-~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~ 65 (131)
.+|+|.||.... ++++|+++|++||.|..|.|. ..++|||||+|.+.++|++|++.||+.. + |.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 95 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQIT 95 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECE
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 479999994432 258999999999999999774 3468999999999999999999999986 4 45
Q ss_pred EEEeec
Q 046599 66 VELSHN 71 (131)
Q Consensus 66 v~~~~~ 71 (131)
|+++..
T Consensus 96 v~~a~~ 101 (112)
T 2dit_A 96 AQAWDG 101 (112)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 555443
No 193
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.3e-14 Score=91.44 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=54.9
Q ss_pred ceEEEcCC----CCCCcHHHHHHHhhcCCCeeEEEEcc-----CCCcEEEEEEcC----HHH----HHHHHH--HhcCCc
Q 046599 2 SRVYVGNL----DSRVSERDLEDEFRVFGVIRSVWVAR-----RPPGYAFIDFDD----YRD----AQDAIR--ELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L----~~~~t~~~l~~~f~~~G~i~~~~i~~-----~~~g~~fv~f~~----~~~----a~~ai~--~l~g~~ 62 (131)
++|||+|| |+.+++++|+++|++||+|..+.++. .++|||||+|.+ +++ |..|+. .||+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 99999999999999999999999874 468999999996 333 677877 677776
Q ss_pred --ceEEEEee
Q 046599 63 --GWRVELSH 70 (131)
Q Consensus 63 --~~~v~~~~ 70 (131)
+..|.|..
T Consensus 83 I~Gr~irV~l 92 (136)
T 2j8a_A 83 IMGFKFEVIL 92 (136)
T ss_dssp ETTEEEEEEE
T ss_pred ecCcEEEEEE
Confidence 44444443
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.51 E-value=4.2e-14 Score=100.44 Aligned_cols=71 Identities=20% Similarity=0.373 Sum_probs=61.4
Q ss_pred ceEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEcc------CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSR-VSERDLEDEFRVFGVIRSVWVAR------RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~-~t~~~l~~~f~~~G~i~~~~i~~------~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
++|||+|||+. +|+++|+++|++||.|..+.|+. .++|||||+|.+.++|++|+ .||+.. +..|.+..+.
T Consensus 211 ~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 211 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp TEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred ceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 58999999999 99999999999999999999864 34799999999999999999 999987 5555555544
Q ss_pred C
Q 046599 73 R 73 (131)
Q Consensus 73 ~ 73 (131)
+
T Consensus 290 ~ 290 (292)
T 2ghp_A 290 K 290 (292)
T ss_dssp C
T ss_pred C
Confidence 3
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=5.4e-14 Score=94.30 Aligned_cols=70 Identities=24% Similarity=0.494 Sum_probs=58.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEE
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVF----G-------VIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVEL 68 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~ 68 (131)
.+|||+|||+++|+++|+++|++| | .|..+.+. ..+|||||+|.+.++|++|+ .||+.. +..|.+
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEE
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEE
Confidence 589999999999999999999999 5 66666664 45899999999999999999 799986 555555
Q ss_pred eecCC
Q 046599 69 SHNSR 73 (131)
Q Consensus 69 ~~~~~ 73 (131)
..+..
T Consensus 83 ~~~~~ 87 (198)
T 2yh0_A 83 RRPHD 87 (198)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 55443
No 196
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=1.9e-13 Score=83.95 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=56.9
Q ss_pred ceEEEcCCCC-----CCcHHHHHHHhhcCCCeeEEEEcc------CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEE
Q 046599 2 SRVYVGNLDS-----RVSERDLEDEFRVFGVIRSVWVAR------RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVEL 68 (131)
Q Consensus 2 ~~l~V~~L~~-----~~t~~~l~~~f~~~G~i~~~~i~~------~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~ 68 (131)
.+|+|.||.. +.++++|+++|++||.|..+.|+. .++||+||+|.+.++|++|++.|||.. +..|.+
T Consensus 9 ~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v 88 (105)
T 2pe8_A 9 KVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 88 (105)
T ss_dssp SEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 4789999952 237899999999999999999864 358999999999999999999999997 444444
Q ss_pred eec
Q 046599 69 SHN 71 (131)
Q Consensus 69 ~~~ 71 (131)
..+
T Consensus 89 ~~a 91 (105)
T 2pe8_A 89 CFY 91 (105)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
No 197
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.49 E-value=8.7e-14 Score=98.43 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=61.2
Q ss_pred ceEEEcCCCCCC-cHHHHHHHhhcCCCeeEEEEccC----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRV-SERDLEDEFRVFGVIRSVWVARR----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~-t~~~l~~~f~~~G~i~~~~i~~~----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+.+ |+++|+++|++||.|..+.|..+ ++|+|||+|.+.++|.+|+..||+.. +..|.+..+.+
T Consensus 185 ~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 185 RCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp SEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred cEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 589999999995 99999999999999999998743 57899999999999999999999997 44444444433
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=2.2e-14 Score=94.67 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=56.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEE----ccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWV----ARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNSR 73 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i----~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~~ 73 (131)
++|||+|||+++|+++|+++|.+||.+..+.+ ...++|||||+|.+.++|++|++ ||+.. +..|.+..+.+
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 14 FNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCC
Confidence 58999999999999999999999986554222 13578999999999999999995 99986 55555555443
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1e-13 Score=97.33 Aligned_cols=60 Identities=28% Similarity=0.413 Sum_probs=54.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGK 61 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~ 61 (131)
++|||+|||+.+|+++|+++|++||.|..|.|+. .++|||||+|.+.++|.+|+..||+.
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999998864 35789999999999999999999653
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.46 E-value=2.5e-13 Score=96.37 Aligned_cols=71 Identities=18% Similarity=0.394 Sum_probs=60.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEcc----CCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeecC
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFG-VIRSVWVAR----RPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHNS 72 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G-~i~~~~i~~----~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~~ 72 (131)
++|||+|||+.+++++|.++|.+|| .|..+.|+. .++|||||+|.+.++|+.|++.|++.. +..|.+..+.
T Consensus 118 ~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 118 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 5899999999999999999999999 999999864 368999999999999999999999987 4444444443
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.6e-13 Score=84.03 Aligned_cols=62 Identities=21% Similarity=0.440 Sum_probs=50.4
Q ss_pred cCCCCCCcHHHHHHHh------------hcCCCeeEEEEccC----CCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEE
Q 046599 7 GNLDSRVSERDLEDEF------------RVFGVIRSVWVARR----PPGYAFIDFDDYRDAQDAIRELDGKN--GWRVEL 68 (131)
Q Consensus 7 ~~L~~~~t~~~l~~~f------------~~~G~i~~~~i~~~----~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~ 68 (131)
.|||+.+++++|+++| ++||.|..|.|+.+ ++|||||+|.+.++|++|++.|||.. +..|.+
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 4566667777776666 99999999999753 58999999999999999999999997 444443
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=5.7e-12 Score=77.25 Aligned_cols=67 Identities=24% Similarity=0.413 Sum_probs=53.6
Q ss_pred eEEEcCC--CCCC--------cHHHHHHHhhcCCCeeEEEEcc-------CCCcEEEEEEcCHHHHHHHHHHhcCCc--c
Q 046599 3 RVYVGNL--DSRV--------SERDLEDEFRVFGVIRSVWVAR-------RPPGYAFIDFDDYRDAQDAIRELDGKN--G 63 (131)
Q Consensus 3 ~l~V~~L--~~~~--------t~~~l~~~f~~~G~i~~~~i~~-------~~~g~~fv~f~~~~~a~~ai~~l~g~~--~ 63 (131)
.|.|.|+ |..+ .+++|++.|++||.|..+.|+. .++|++||+|.+.++|++|++.|||.. +
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~G 86 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN 86 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4677787 3333 3468999999999999999974 257999999999999999999999997 4
Q ss_pred eEEEEe
Q 046599 64 WRVELS 69 (131)
Q Consensus 64 ~~v~~~ 69 (131)
..|.+.
T Consensus 87 R~i~v~ 92 (105)
T 3v4m_A 87 RVVVTK 92 (105)
T ss_dssp EECEEE
T ss_pred CEEEEE
Confidence 444443
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.7e-11 Score=76.67 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=57.2
Q ss_pred ceEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcC-HHHHHHHHHHhcCCc------ceEEEEee
Q 046599 2 SRVYVGNLDSR-VSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDD-YRDAQDAIRELDGKN------GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~-~~~a~~ai~~l~g~~------~~~v~~~~ 70 (131)
+-|||+||++. ++.++|+++|++||+|.+|.+... .-.|||.|.+ ..+|+.|+..||... .+++++..
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 36899999999 999999999999999999999865 3479999999 899999999996432 45666554
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=2e-11 Score=76.33 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=54.6
Q ss_pred ceEEEcCCC--CC---CcHHHHHHHhhcCCCeeEEEEccC---------CCcEEEEEEcCHHHHHHHHHHhcCCc--ceE
Q 046599 2 SRVYVGNLD--SR---VSERDLEDEFRVFGVIRSVWVARR---------PPGYAFIDFDDYRDAQDAIRELDGKN--GWR 65 (131)
Q Consensus 2 ~~l~V~~L~--~~---~t~~~l~~~f~~~G~i~~~~i~~~---------~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~ 65 (131)
..|+|.|+- .+ -.+++|++.|++||.|..|.|..+ ++|++||+|.+.++|++|++.|||.. +..
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~ 100 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 100 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 368888983 22 236899999999999999998742 24899999999999999999999997 444
Q ss_pred EEEee
Q 046599 66 VELSH 70 (131)
Q Consensus 66 v~~~~ 70 (131)
|.+..
T Consensus 101 i~v~~ 105 (118)
T 3ue2_A 101 VVAEV 105 (118)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 44433
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=2.9e-11 Score=75.10 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCCeeEEEEccC-CCcEEEEEEcCHHHHHHHHHHhcCCc--c--eEEEEe
Q 046599 15 ERDLEDEFRVFGVIRSVWVARR-PPGYAFIDFDDYRDAQDAIRELDGKN--G--WRVELS 69 (131)
Q Consensus 15 ~~~l~~~f~~~G~i~~~~i~~~-~~g~~fv~f~~~~~a~~ai~~l~g~~--~--~~v~~~ 69 (131)
+++|++.|++||.|..|.|... .+|++||+|.+.++|++|++.|||.. + |.|++.
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 90 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence 3588999999999999999754 48999999999999999999999997 4 455554
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=4.7e-10 Score=66.41 Aligned_cols=66 Identities=18% Similarity=0.317 Sum_probs=50.3
Q ss_pred ceEEEcCCCC----CCcH----HHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDS----RVSE----RDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~----~~t~----~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
.||+|.-++. +.-. .+|.+.|++||.|..+++.. +.+||+|.+.++|.+||+ ||+.+ +..|.+..+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 3677766552 2222 57999999999999999984 449999999999999998 99998 444444443
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=8.2e-09 Score=61.41 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=51.0
Q ss_pred ceEEEcCCCCC------CcH---HHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEee
Q 046599 2 SRVYVGNLDSR------VSE---RDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSH 70 (131)
Q Consensus 2 ~~l~V~~L~~~------~t~---~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~ 70 (131)
.||+|.-++.. ..+ .+|.+.|++||+|..+++..+ -+||+|.+.++|.+||+ ||+.+ +..|.+..
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 47888777643 221 468999999999999999854 39999999999999998 99998 55555543
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.64 E-value=8.9e-08 Score=65.39 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=47.8
Q ss_pred CcHHHHHHHhhcCCCeeEEEEcc---------CCCcEEEEEEcCHHHHHHHHHHhcCCc----ceEEEEe
Q 046599 13 VSERDLEDEFRVFGVIRSVWVAR---------RPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELS 69 (131)
Q Consensus 13 ~t~~~l~~~f~~~G~i~~~~i~~---------~~~g~~fv~f~~~~~a~~ai~~l~g~~----~~~v~~~ 69 (131)
-.+++|.+.|++||.|..+.|.. .++|++||+|.+.++|++|++.|||.. .|.|++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 45678999999999999998862 357899999999999999999999997 4455543
No 209
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.25 E-value=2.7e-06 Score=42.59 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCC
Q 046599 87 GGSDLKCYECGEPGHFARECRLRGG 111 (131)
Q Consensus 87 ~~~~~~~~~~g~~g~~~~~~~~~~~ 111 (131)
......||.||..|||+++||....
T Consensus 7 ~~~~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 7 QLDRDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SCCSSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCCCCeeeECCCCCcchhhCcCCcc
Confidence 4566789999999999999998543
No 210
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.16 E-value=3.3e-06 Score=45.42 Aligned_cols=27 Identities=33% Similarity=0.640 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCCCCCC
Q 046599 85 RSGGSDLKCYECGEPGHFARECRLRGG 111 (131)
Q Consensus 85 ~~~~~~~~~~~~g~~g~~~~~~~~~~~ 111 (131)
+.......||.||+.|||+++||....
T Consensus 18 ~~~~~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 18 RSQLDRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp STTCCTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCCCCCcceeCCCCCcccccCcCCcc
Confidence 345667889999999999999998643
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.7e-05 Score=48.26 Aligned_cols=65 Identities=20% Similarity=0.147 Sum_probs=56.1
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcC-----CCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEE
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVF-----GVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVEL 68 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~-----G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~ 68 (131)
+|-+-|||..++..-|+.++..+ |.+..|.+..+ -+-|+|+|.+...|.+|.-.|+|.+ +.++.+
T Consensus 23 tiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 23 LICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred EEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 57778999999999999999999 99999988766 4569999999999999998999997 444443
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.12 E-value=3.3e-05 Score=45.69 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=52.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEcc-C------CCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVAR-R------PPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 1 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~-~------~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
|++|-|.+||+.+||+++.+.++....+.....+. + .-.-|+|.|.+.+++..-.+.++|..
T Consensus 1 ~~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 1 LSKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CCEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 68999999999999999999999988777666542 1 23579999999999999999999884
No 213
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=98.02 E-value=3.3e-07 Score=59.15 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHhhcCCCeeEEEEccCCCcEEEEEEc
Q 046599 16 RDLEDEFRVFGVIRSVWVARRPPGYAFIDFD 46 (131)
Q Consensus 16 ~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~ 46 (131)
+|+.++|...|.|++... .+||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn~---~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV---RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET---TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC---CCCeeEEeeC
Confidence 566777888888877664 4899999976
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.97 E-value=3.5e-05 Score=45.90 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=43.7
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 4 VYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
||+-++|+.+...||.++|+.||.|. |.++. ---|||.|.+++.|..|+..+....
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fggv~-I~Wid--DTsAlvvf~~~~~a~~al~~i~k~~ 73 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWID--DTSAFVSLSQPEQVQIAVNTSKYAE 73 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCSCC-CEEEE--TTEEEEECSCHHHHHHHHHHHHHCC
T ss_pred EEEEeCChhhhhHHHHHHhhccCCEE-EEEEc--CCeEEEEecCHHHHHHHHHhcccCC
Confidence 44449999999999999999998433 33332 3579999999999999999875333
No 215
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.89 E-value=7.9e-06 Score=37.06 Aligned_cols=20 Identities=35% Similarity=1.062 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCcCCCCC
Q 046599 91 LKCYECGEPGHFARECRLRG 110 (131)
Q Consensus 91 ~~~~~~g~~g~~~~~~~~~~ 110 (131)
..||.||..||++++|+...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 46999999999999999753
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=0.00011 Score=44.24 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=46.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhc---C--CCeeEEEEccCCCcEEEEEEcCHHHHHHHHHH
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRV---F--GVIRSVWVARRPPGYAFIDFDDYRDAQDAIRE 57 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~---~--G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~ 57 (131)
.+|.|.|||+.+.++.|+-.|+. - |+|..+.... +-|+|+|.+...|+..++.
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC
Confidence 57999999999999999999987 2 4888888763 7899999999999999875
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.80 E-value=4.9e-05 Score=45.38 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=43.3
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcC
Q 046599 4 VYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 60 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g 60 (131)
||+-++|+.+...||.++|+.||. ..|.++. ---|||.|.+++.|..|+..+..
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~Wid--DTsAlvvf~~~~~a~~al~~i~~ 61 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWID--DTSAFVSLSQPEQVKIAVNTSKY 61 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEE--TTEEEEEEEEECHHHHHHHHHTT
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEc--CCeEEEEecCHHHHHHHHHhccc
Confidence 444499999999999999999993 3444443 35799999999999999998753
No 218
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.00063 Score=40.99 Aligned_cols=69 Identities=22% Similarity=0.194 Sum_probs=52.5
Q ss_pred ceEEEcCCCCCC-cH----HHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc--ceEEEEeec
Q 046599 2 SRVYVGNLDSRV-SE----RDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN--GWRVELSHN 71 (131)
Q Consensus 2 ~~l~V~~L~~~~-t~----~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~--~~~v~~~~~ 71 (131)
++|+|.||+..+ +. +.++++|.+|+++........ -.-..|.|.+.++|.+|-..|++.. +-++.+-.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-ceEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 689999998765 22 467899999998877766543 3357899999999999999999987 434444443
No 219
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=0.0013 Score=40.68 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=46.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
-|.|.++|+... ..|-..|++||.|...... ....+-.|.|.+..+|++||. .|+..
T Consensus 26 wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~i 82 (119)
T 1wwh_A 26 WVTVFGFPQASA-SYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRI 82 (119)
T ss_dssp EEEEECCCGGGH-HHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCE
T ss_pred EEEEECCCHHHH-HHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeE
Confidence 467889988864 5667899999999988773 235799999999999999998 57765
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.25 E-value=0.00084 Score=39.97 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=46.1
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEc-c------CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVA-R------RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~-~------~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
+|-|..||+.+||+++.+.++..-++.+...+ + ..-.-|+|.|.+.+++..-.+.++|..
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~ 77 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYI 77 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcE
Confidence 68899999999999988888776554433332 1 123468999999999999999998874
No 221
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00029 Score=37.58 Aligned_cols=21 Identities=38% Similarity=1.211 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCcCCCC
Q 046599 89 SDLKCYECGEPGHFARECRLR 109 (131)
Q Consensus 89 ~~~~~~~~g~~g~~~~~~~~~ 109 (131)
....||.||..|||.++||..
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSGG
T ss_pred CCCccccCCCcCcccccCCCC
Confidence 345799999999999999954
No 222
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.09 E-value=0.00027 Score=53.29 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=40.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHH
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIR 56 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~ 56 (131)
.+|+|. .|..+++.+|.+.|++||+|..+.+-....-||.|+|.+.++++.++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 368896 799999999999999999999998876555699999999988887653
No 223
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=96.91 E-value=0.00052 Score=31.68 Aligned_cols=20 Identities=45% Similarity=1.175 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCcCCCC
Q 046599 90 DLKCYECGEPGHFARECRLR 109 (131)
Q Consensus 90 ~~~~~~~g~~g~~~~~~~~~ 109 (131)
...||.||..||++++|+..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 35699999999999999864
No 224
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0017 Score=37.62 Aligned_cols=21 Identities=38% Similarity=1.160 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCCCCcCCCCC
Q 046599 90 DLKCYECGEPGHFARECRLRG 110 (131)
Q Consensus 90 ~~~~~~~g~~g~~~~~~~~~~ 110 (131)
...||.||..||++++||..+
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSCC
T ss_pred CCeecccCCCCcCcccCCccc
Confidence 456999999999999999865
No 225
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=96.07 E-value=0.0044 Score=33.45 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCCCCCcCCCCC
Q 046599 89 SDLKCYECGEPGHFARECRLRG 110 (131)
Q Consensus 89 ~~~~~~~~g~~g~~~~~~~~~~ 110 (131)
....||.|+..||++++|+...
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CCcceeECCCCCCccCcCCCcc
Confidence 3467999999999999999753
No 226
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=96.04 E-value=0.0044 Score=30.44 Aligned_cols=19 Identities=26% Similarity=0.711 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCcCCC
Q 046599 90 DLKCYECGEPGHFARECRL 108 (131)
Q Consensus 90 ~~~~~~~g~~g~~~~~~~~ 108 (131)
...||.||..||++++||.
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 3579999999999999874
No 227
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.99 E-value=0.0065 Score=33.18 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCCcCCCC
Q 046599 90 DLKCYECGEPGHFARECRLR 109 (131)
Q Consensus 90 ~~~~~~~g~~g~~~~~~~~~ 109 (131)
...||.|+..||++++||..
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGG
T ss_pred CCccCCcCCcCCccCcCCCc
Confidence 44577777777777777754
No 228
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.81 E-value=0.0097 Score=37.28 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=43.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEcc------------------CCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 2 SRVYVGNLDSRVSERDLEDEFRVFGVIRS-VWVAR------------------RPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 2 ~~l~V~~L~~~~t~~~l~~~f~~~G~i~~-~~i~~------------------~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
+-|.|-+.|+..+..- -+.|++||.|.+ +.+.. ....+..|.|.+..+|++||. .||..
T Consensus 8 ~~VtVFGFp~~~~~~V-I~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQV-IAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHHH-HHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHHH-HHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 3577889988777654 568999998866 21110 124688999999999999997 66664
No 229
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.75 E-value=0.055 Score=41.32 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=46.5
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCcceEE
Q 046599 4 VYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKNGWRV 66 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~~~~v 66 (131)
++| .+|..+...+|.+.|+.||.+ .|.++. ...|||.|.+.+.|..++..++....++|
T Consensus 443 l~v-~f~~~~~~~~i~~~fs~fg~v-~V~wid--dt~a~V~~~~~~~a~~~l~~~~~~~~~~i 501 (507)
T 3d45_A 443 LHV-TFPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNTSKYAESYRI 501 (507)
T ss_dssp EEE-ECCTTCCHHHHHHHGGGGCCC-EEEECS--SSEEEEECSCHHHHHHHHHHHTTCSSCEE
T ss_pred EEE-eCCCCCCHHHHHHHHHhcCCE-EEEEEc--CCeEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 445 488999999999999999954 444442 45799999999999999999976654444
No 230
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=95.69 E-value=0.0091 Score=30.84 Aligned_cols=18 Identities=50% Similarity=1.376 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCCcCCC
Q 046599 91 LKCYECGEPGHFARECRL 108 (131)
Q Consensus 91 ~~~~~~g~~g~~~~~~~~ 108 (131)
..||.||..||++++|+.
T Consensus 7 ~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CBCTTTCCBTCCTTTCCC
T ss_pred CeeeecCCCCcChhhCcC
Confidence 346666666666666654
No 231
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=95.67 E-value=0.0063 Score=32.97 Aligned_cols=18 Identities=44% Similarity=0.990 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCcCCCC
Q 046599 92 KCYECGEPGHFARECRLR 109 (131)
Q Consensus 92 ~~~~~g~~g~~~~~~~~~ 109 (131)
.||.|+..||++++||..
T Consensus 32 ~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 32 RCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp BCTTTCCBSSCGGGCCCC
T ss_pred eeCCCCCCCCCcCCCcCC
Confidence 467777777777777654
No 232
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=95.61 E-value=0.0063 Score=29.87 Aligned_cols=18 Identities=56% Similarity=1.363 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCCCcCCCC
Q 046599 92 KCYECGEPGHFARECRLR 109 (131)
Q Consensus 92 ~~~~~g~~g~~~~~~~~~ 109 (131)
.||.||+.||++++||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 489999999999999974
No 233
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.59 E-value=0.04 Score=29.94 Aligned_cols=21 Identities=48% Similarity=1.102 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCCCCcCCC
Q 046599 88 GSDLKCYECGEPGHFARECRL 108 (131)
Q Consensus 88 ~~~~~~~~~g~~g~~~~~~~~ 108 (131)
.....||.|++.||++++|+.
T Consensus 5 ~r~~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 5 SSGDRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CSCCCCSSSCCSSSCTTTCCS
T ss_pred CCCCcccccCCCCcChhhCCC
Confidence 344679999999999999995
No 234
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=95.57 E-value=0.0048 Score=29.91 Aligned_cols=18 Identities=44% Similarity=1.348 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCcCCC
Q 046599 91 LKCYECGEPGHFARECRL 108 (131)
Q Consensus 91 ~~~~~~g~~g~~~~~~~~ 108 (131)
..||.|+..||++++||.
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 568889999999888874
No 235
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=95.53 E-value=0.0073 Score=29.25 Aligned_cols=18 Identities=50% Similarity=1.451 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCcCCCC
Q 046599 92 KCYECGEPGHFARECRLR 109 (131)
Q Consensus 92 ~~~~~g~~g~~~~~~~~~ 109 (131)
.||.|++.||++++|+..
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 489999999999999863
No 236
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.42 E-value=0.017 Score=36.65 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=23.2
Q ss_pred CCCcEEEEEEcCHHHHHHHHHHhcCC
Q 046599 36 RPPGYAFIDFDDYRDAQDAIRELDGK 61 (131)
Q Consensus 36 ~~~g~~fv~f~~~~~a~~ai~~l~g~ 61 (131)
.++||+||+|.+.++|++|++.+++.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhccc
Confidence 56899999999999999999988753
No 237
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=95.40 E-value=0.018 Score=32.43 Aligned_cols=20 Identities=45% Similarity=1.115 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCCCCCcCCC
Q 046599 89 SDLKCYECGEPGHFARECRL 108 (131)
Q Consensus 89 ~~~~~~~~g~~g~~~~~~~~ 108 (131)
....||.||..||++++|+.
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSS
T ss_pred CCCcccccCCcCcCcccCCC
Confidence 44557777777777777774
No 238
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=95.33 E-value=0.0088 Score=32.40 Aligned_cols=19 Identities=42% Similarity=1.146 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCcCCC
Q 046599 90 DLKCYECGEPGHFARECRL 108 (131)
Q Consensus 90 ~~~~~~~g~~g~~~~~~~~ 108 (131)
...||.|+..||++++||.
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTT
T ss_pred CCcccccCCCCeehhhCcC
Confidence 4569999999999999986
No 239
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=95.33 E-value=0.0097 Score=30.73 Aligned_cols=20 Identities=35% Similarity=0.971 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCCcCCCC
Q 046599 90 DLKCYECGEPGHFARECRLR 109 (131)
Q Consensus 90 ~~~~~~~g~~g~~~~~~~~~ 109 (131)
...||.||..||++++||..
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCSS
T ss_pred CCeeCcCCCcCCccCCCcCC
Confidence 35699999999999999974
No 240
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=95.27 E-value=0.0095 Score=31.48 Aligned_cols=17 Identities=35% Similarity=1.130 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCcCCC
Q 046599 92 KCYECGEPGHFARECRL 108 (131)
Q Consensus 92 ~~~~~g~~g~~~~~~~~ 108 (131)
.||.||..||++++||.
T Consensus 35 ~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 35 GCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred EeCCCCCcCCccCCCcC
Confidence 45666666666666654
No 241
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=95.00 E-value=0.0041 Score=33.56 Aligned_cols=20 Identities=40% Similarity=1.135 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCcCCCCC
Q 046599 91 LKCYECGEPGHFARECRLRG 110 (131)
Q Consensus 91 ~~~~~~g~~g~~~~~~~~~~ 110 (131)
..||.|+..||++++||...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp --------------------
T ss_pred CccccCCCCCcCHhhCcCCC
Confidence 35999999999999999753
No 242
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=94.91 E-value=0.037 Score=31.16 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCCcCCCC
Q 046599 89 SDLKCYECGEPGHFARECRLR 109 (131)
Q Consensus 89 ~~~~~~~~g~~g~~~~~~~~~ 109 (131)
....||.||..||++++||..
T Consensus 45 ~~~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 45 QPKKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCCCTTTCCTTSCGGGCTTG
T ss_pred CCCccCCcCCcCCccCcCcCC
Confidence 356799999999999999974
No 243
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=94.71 E-value=0.025 Score=36.20 Aligned_cols=19 Identities=47% Similarity=1.172 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCcCCC
Q 046599 90 DLKCYECGEPGHFARECRL 108 (131)
Q Consensus 90 ~~~~~~~g~~g~~~~~~~~ 108 (131)
...||.||..||++++|+.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 3457777777777777765
No 244
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=94.58 E-value=0.015 Score=30.67 Aligned_cols=20 Identities=45% Similarity=1.248 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCCcCCCC
Q 046599 90 DLKCYECGEPGHFARECRLR 109 (131)
Q Consensus 90 ~~~~~~~g~~g~~~~~~~~~ 109 (131)
...||.||..||++++|+..
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSC
T ss_pred CcceeeeCCCCcChhhcCCC
Confidence 45799999999999999874
No 245
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.067 Score=32.97 Aligned_cols=20 Identities=40% Similarity=1.187 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCCCcCCC
Q 046599 89 SDLKCYECGEPGHFARECRL 108 (131)
Q Consensus 89 ~~~~~~~~g~~g~~~~~~~~ 108 (131)
....||.||..||++++||.
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 45679999999999999986
No 246
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.35 E-value=0.06 Score=33.90 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=28.9
Q ss_pred CCCcEEEEEEcCHHHHHHHHHHh-cCCc--ceEEEEeecC
Q 046599 36 RPPGYAFIDFDDYRDAQDAIREL-DGKN--GWRVELSHNS 72 (131)
Q Consensus 36 ~~~g~~fv~f~~~~~a~~ai~~l-~g~~--~~~v~~~~~~ 72 (131)
..+|+++|+|.+.++|++|++.| |+.+ + .+.+..+.
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 46899999999999999999999 7775 5 55555443
No 247
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=92.01 E-value=1.1 Score=26.18 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=46.9
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
-|-|-|+|..+-..++.-.....|---.+..+ -|-|.+.|.+.++...||..|-+..
T Consensus 14 likiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhn 70 (129)
T 4eyt_A 14 LIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHN 70 (129)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETT
T ss_pred EEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcC
Confidence 35577999999999988888888866677665 6789999999999999999886654
No 248
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=91.07 E-value=0.076 Score=30.54 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCCCCcCCCC
Q 046599 89 SDLKCYECGEPGHFARECRLR 109 (131)
Q Consensus 89 ~~~~~~~~g~~g~~~~~~~~~ 109 (131)
....||.|+..||.+++||.-
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGG
T ss_pred ccCCCCCCCCCCCccccCCCc
Confidence 345799999999999999974
No 249
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=88.06 E-value=0.34 Score=29.71 Aligned_cols=16 Identities=38% Similarity=1.061 Sum_probs=7.0
Q ss_pred CCCCCCCC-CCCCCcCC
Q 046599 92 KCYECGEP-GHFARECR 107 (131)
Q Consensus 92 ~~~~~g~~-g~~~~~~~ 107 (131)
.||.||.. ||++++||
T Consensus 24 ~C~~Cg~~~gH~~~~C~ 40 (124)
T 2lli_A 24 ICSYCGATDDHYSRHCP 40 (124)
T ss_dssp CCTTTCCTTTCCTTTGG
T ss_pred cCcCCCCcCCccCcccC
Confidence 34444444 44444443
No 250
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.74 E-value=7.8 Score=22.19 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=37.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEccCCCc--EEEEEEcCHHHHHHHHH
Q 046599 3 RVYVGNLDSRVSERDLEDEFRV-FG-VIRSVWVARRPPG--YAFIDFDDYRDAQDAIR 56 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~g--~~fv~f~~~~~a~~ai~ 56 (131)
+.|+.-.....+..+|++.+++ |+ .|..+..+..+.+ -|+|.+....+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 3466667788999999988876 66 6666655433333 58999987776665433
No 251
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=74.55 E-value=9.9 Score=21.81 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=26.6
Q ss_pred CeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCC
Q 046599 27 VIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61 (131)
Q Consensus 27 ~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~ 61 (131)
+|..+.+.....||.||++...++...+|....+.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 46777776678999999999988877776655443
No 252
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=68.18 E-value=6.9 Score=23.29 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=28.9
Q ss_pred CeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCC
Q 046599 27 VIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61 (131)
Q Consensus 27 ~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~ 61 (131)
.|.++......+||-||+=.+..++..|++.+.+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 47777777778999999999999999998876544
No 253
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=62.14 E-value=22 Score=20.98 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=48.1
Q ss_pred EcCCCCCCcHHHHHHHh-hcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc---ceEEEEeecCCC
Q 046599 6 VGNLDSRVSERDLEDEF-RVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN---GWRVELSHNSRG 74 (131)
Q Consensus 6 V~~L~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~---~~~v~~~~~~~~ 74 (131)
|-.++.-+.-+||.... ..||.-.++... ..-..|-..+.++..+||+.|+-.. .++|-+...+..
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~---n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVINGST 90 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC---SSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECCCC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe---cceEEEeccCHHHHHHHHHHHccCCcccceEEEEecCCCC
Confidence 33456677778887666 458887777665 3347788899999999999988764 678877666543
No 254
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=60.53 E-value=20 Score=22.53 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=34.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEccCCCc--EEEEEEcCHHHHHHH
Q 046599 4 VYVGNLDSRVSERDLEDEFRV-FG-VIRSVWVARRPPG--YAFIDFDDYRDAQDA 54 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~g--~~fv~f~~~~~a~~a 54 (131)
.|+.-+....+..+|++.++. |+ .|..|..+....| -|+|.+....+|...
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldv 135 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDI 135 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHH
Confidence 456667778888888888876 56 5666655432233 589999876665544
No 255
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=60.20 E-value=20 Score=22.78 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=34.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEccCCCc--EEEEEEcCHHHHHHH
Q 046599 4 VYVGNLDSRVSERDLEDEFRV-FG-VIRSVWVARRPPG--YAFIDFDDYRDAQDA 54 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~g--~~fv~f~~~~~a~~a 54 (131)
.|+.-+....+..+|++.++. |+ .|..|..+....| -|||.+....+|...
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldv 143 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTL 143 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHH
Confidence 456667778888888888876 56 5666655433233 589999876665554
No 256
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=59.86 E-value=13 Score=21.22 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=33.6
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEccCCCc--EEEEEEcCHHHHH
Q 046599 4 VYVGNLDSRVSERDLEDEFRV-FG-VIRSVWVARRPPG--YAFIDFDDYRDAQ 52 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~g--~~fv~f~~~~~a~ 52 (131)
-|+...+..++..+|++.+++ |+ .|..+..+....+ -|+|.+....+|.
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~ai 76 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQ 76 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHH
Confidence 456667888999999888876 66 6666655433333 5899987765543
No 257
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=53.19 E-value=6.5 Score=27.36 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=23.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEE
Q 046599 4 VYVGNLDSRVSERDLEDEFRVFGVIRSVWV 33 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i 33 (131)
+.|+|||+.++..-|..++.....+..+.+
T Consensus 117 ~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 117 RIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp EEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred EEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 579999999999999999976544544433
No 258
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=52.36 E-value=3.7 Score=17.94 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCcCCCC
Q 046599 93 CYECGEPGHFARECRLR 109 (131)
Q Consensus 93 ~~~~g~~g~~~~~~~~~ 109 (131)
|-.|..-||+..+|++.
T Consensus 6 Ce~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 6 CEICEMFGHWATNCNDD 22 (26)
T ss_dssp ETTTTEESSCGGGCCTT
T ss_pred chHHHHhCcccccCCcc
Confidence 77888999999999763
No 259
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=51.79 E-value=14 Score=25.50 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=22.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEE
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSV 31 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~ 31 (131)
.+.|+|||++++...|..++.. ..+...
T Consensus 112 ~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 112 SLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp EEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred cEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 3578999999999999999977 555443
No 260
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=50.69 E-value=48 Score=21.47 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=35.0
Q ss_pred eEEEcCCCCC---------CcHHHHHHHh--hcCCCeeEEEEcc--CCCcEEEEEEcC-HHHHHHHHH
Q 046599 3 RVYVGNLDSR---------VSERDLEDEF--RVFGVIRSVWVAR--RPPGYAFIDFDD-YRDAQDAIR 56 (131)
Q Consensus 3 ~l~V~~L~~~---------~t~~~l~~~f--~~~G~i~~~~i~~--~~~g~~fv~f~~-~~~a~~ai~ 56 (131)
++.|-|+|.. ...++|.+.| +.|.++.-..+.. ...|++.|.|.+ ......|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 4566788762 3346899977 8898766544432 346789999996 333444544
No 261
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=50.55 E-value=29 Score=22.17 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=33.3
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEccCCCc--EEEEEEcCHHHHHH
Q 046599 4 VYVGNLDSRVSERDLEDEFRV-FG-VIRSVWVARRPPG--YAFIDFDDYRDAQD 53 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~g--~~fv~f~~~~~a~~ 53 (131)
.|+.-++...+..+|++.++. |+ .|..|..+....+ -|+|.+....+|..
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid 148 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALD 148 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHH
Confidence 456667788888898888876 66 5666655432223 58999987655443
No 262
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=47.88 E-value=17 Score=23.15 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=33.1
Q ss_pred EEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEccCCCc--EEEEEEcCHHHHHHH
Q 046599 4 VYVGNLDSRVSERDLEDEFRV-FG-VIRSVWVARRPPG--YAFIDFDDYRDAQDA 54 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~-~G-~i~~~~i~~~~~g--~~fv~f~~~~~a~~a 54 (131)
.|+.-+....+..+|++.++. |+ .|..|..+....+ -|||.+....+|...
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldv 145 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDV 145 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHH
Confidence 455566777888888877765 56 5666655432233 589999876665543
No 263
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=47.49 E-value=46 Score=20.27 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=35.7
Q ss_pred EEEcCCCCCCcHHH---HHHHhhcCCCeeEEEEccCCCcEEEEEEc--CHHHHHHHHHHhcC
Q 046599 4 VYVGNLDSRVSERD---LEDEFRVFGVIRSVWVARRPPGYAFIDFD--DYRDAQDAIRELDG 60 (131)
Q Consensus 4 l~V~~L~~~~t~~~---l~~~f~~~G~i~~~~i~~~~~g~~fv~f~--~~~~a~~ai~~l~g 60 (131)
|.|.++|..+..+- -+.+-..|.--....|++...|.--|.|. +.+..++|++.|-.
T Consensus 45 i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemir 106 (170)
T 4hhu_A 45 IVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIR 106 (170)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHH
Confidence 56778887766542 22233345433444566666777778886 67788888887643
No 264
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=46.41 E-value=30 Score=17.93 Aligned_cols=53 Identities=8% Similarity=-0.010 Sum_probs=37.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHH
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRE 57 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~ 57 (131)
++.|.++.=.--...|+..+.. ..|..+.+.-. .+-+.|.|.+.++...+|+.
T Consensus 8 ~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 8 VLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-CCEEEEEECCHHHHHHHHHH
Confidence 5778888777777889999988 77888777532 45677887755555566654
No 265
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=46.14 E-value=18 Score=24.03 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=27.3
Q ss_pred eeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 28 IRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 28 i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
|.++......+||-||+=.+..++..||+.+.+.-
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 66666655579999999999999998887666543
No 266
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=45.84 E-value=34 Score=18.32 Aligned_cols=56 Identities=5% Similarity=0.223 Sum_probs=35.4
Q ss_pred eEEEc-CCCCCCcHHHHHHHhhcCC-----CeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc
Q 046599 3 RVYVG-NLDSRVSERDLEDEFRVFG-----VIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN 62 (131)
Q Consensus 3 ~l~V~-~L~~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~ 62 (131)
+|||. +--..++..+|..++..-+ .|-.|.|. ..|.||+... ..+..+++.|++..
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~---d~~s~v~v~~-~~~~~~~~~l~~~~ 63 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM---DNASYVEILN-GKGPHVLKVMKNTT 63 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC---SSCEEEEECT-TCHHHHHHHHTTCC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe---CCcEEEEECH-HHHHHHHHHhcccc
Confidence 56663 2234577788888887544 45566664 5689998875 45777888888764
No 267
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=43.04 E-value=22 Score=24.18 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=20.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeE
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRS 30 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~ 30 (131)
.+.|+|||+.++...|..++.....+..
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 3678999999999988888765333333
No 268
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=42.79 E-value=9.7 Score=26.07 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=22.1
Q ss_pred EEcCCCCCCcHHHHHHHhhcCCCeeEEE
Q 046599 5 YVGNLDSRVSERDLEDEFRVFGVIRSVW 32 (131)
Q Consensus 5 ~V~~L~~~~t~~~l~~~f~~~G~i~~~~ 32 (131)
.|+|||+.++...|..++.....+....
T Consensus 100 vv~NlPY~is~~il~~ll~~~~~~~~~~ 127 (255)
T 3tqs_A 100 VVGNLPYNISTPLLFHLFSQIHCIEDMH 127 (255)
T ss_dssp EEEECCHHHHHHHHHHHHHTGGGEEEEE
T ss_pred EEecCCcccCHHHHHHHHhCCCChheEE
Confidence 6899999999999999998655554443
No 269
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=40.74 E-value=35 Score=16.95 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=33.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcC
Q 046599 1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDD 47 (131)
Q Consensus 1 ~~~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~ 47 (131)
|.++.|.++.-..-...|+..+.....|..+.+... .+.+.|.|..
T Consensus 1 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~ 46 (69)
T 2kt2_A 1 MTHLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP-KGTAQLAIVP 46 (69)
T ss_dssp CCCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT-TTEEEEEECT
T ss_pred CEEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc-CCEEEEEECC
Confidence 467788888766666788899988877887777533 4667788764
No 270
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=39.95 E-value=24 Score=25.48 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=18.1
Q ss_pred EEEcCCCCCCcHHHHHHHhhc
Q 046599 4 VYVGNLDSRVSERDLEDEFRV 24 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~ 24 (131)
+.|+|||++++..-|..++..
T Consensus 145 ~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 145 LTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEECCSTTHHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHh
Confidence 679999999999988888764
No 271
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=39.70 E-value=7.5 Score=18.98 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCcCCCC
Q 046599 93 CYECGEPGHFARECRLR 109 (131)
Q Consensus 93 ~~~~g~~g~~~~~~~~~ 109 (131)
|-.|---|||..+|++.
T Consensus 23 Cd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 23 CEICEMFGHWATNCNDD 39 (42)
T ss_dssp ETTTTEESSCGGGCCTT
T ss_pred cccccccCcccccCCcc
Confidence 88899999999999864
No 272
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=39.51 E-value=21 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=19.3
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCC
Q 046599 4 VYVGNLDSRVSERDLEDEFRVFG 26 (131)
Q Consensus 4 l~V~~L~~~~t~~~l~~~f~~~G 26 (131)
+.|+|||++++...|..++....
T Consensus 98 ~vv~NlPy~i~~~il~~ll~~~~ 120 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTVYNKD 120 (249)
T ss_dssp EEEEECCTTTHHHHHHHHHHTGG
T ss_pred EEEEECchhccHHHHHHHHhcCC
Confidence 57899999999999988887543
No 273
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=37.92 E-value=58 Score=18.72 Aligned_cols=63 Identities=22% Similarity=0.213 Sum_probs=45.1
Q ss_pred cCCCCCCcHHHHHHHh-hcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc---ceEEEEeecC
Q 046599 7 GNLDSRVSERDLEDEF-RVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN---GWRVELSHNS 72 (131)
Q Consensus 7 ~~L~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~---~~~v~~~~~~ 72 (131)
-.++.-+.-++|+... ..||.-.++..+ ..--.|-..+.++..+|++.|+... .++|-+....
T Consensus 18 i~f~RPvkf~dl~qkv~~afGq~ldl~y~---nnEL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 18 IAFSRPVKYEDVEHKVTTVFGQPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQD 84 (94)
T ss_dssp EEECSSCCHHHHHHHHHHHHCSSEEEEEE---CSSCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEECS
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeeEEe---cceeEEeccCHHHHHHHHHHhccCccccceEEEEEcCC
Confidence 3456667777877666 458987777665 2335677889999999999887664 6677776654
No 274
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=36.97 E-value=65 Score=19.03 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=41.2
Q ss_pred CCCCCCcHHHHHHHh-hcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc---ceEEEEee
Q 046599 8 NLDSRVSERDLEDEF-RVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN---GWRVELSH 70 (131)
Q Consensus 8 ~L~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~---~~~v~~~~ 70 (131)
.++.-+.-++|+... ..||.-.++..+. .--.|-..+.++..+||+.|+... .++|-+..
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~n---nEL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~ 109 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMN---NELSILLKNQDDLDKAIDILDRSSSMKSLRILLLS 109 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEEC---SSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEec---ceEEEecccHHHHHHHHHHhccCccccceEEEEec
Confidence 455566777776665 4588777776652 235677789999999999887654 56665543
No 275
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=35.57 E-value=81 Score=22.92 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=33.6
Q ss_pred EEcCCCCCC----cHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHH
Q 046599 5 YVGNLDSRV----SERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIR 56 (131)
Q Consensus 5 ~V~~L~~~~----t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~ 56 (131)
+||||..-. ....+.+...+||+|..+.+. +.-+|...+.+.++.++.
T Consensus 18 liGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g----~~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 18 LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG----TKTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp EEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET----TEEEEEECSHHHHHHHHT
T ss_pred eEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC----CCCEEEECCHHHHHHHHH
Confidence 577775432 235677777899999888874 345677788888887764
No 276
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=34.40 E-value=70 Score=18.62 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=43.1
Q ss_pred cCCCCCCcHHHHHHHh-hcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCCc---ceEEEEee
Q 046599 7 GNLDSRVSERDLEDEF-RVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN---GWRVELSH 70 (131)
Q Consensus 7 ~~L~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~~---~~~v~~~~ 70 (131)
-.++.-+.-++|+... ..||.-.++..+. .--.|-..+.++..+||+.|+... .++|-+..
T Consensus 34 i~f~RPv~f~el~~kv~~afGq~ldl~y~n---nEL~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL~~ 98 (100)
T 2npt_B 34 LQFPRPVKLEDLRSKAKIAFGQSMDLHYTN---NELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 98 (100)
T ss_dssp EEECSSCCHHHHHHHHHHHHTSCEEEEEEE---TTEEEECCCHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeeEEec---ceeEEecccHHHHHHHHHHhccCccccceEEEEec
Confidence 3456667777887766 4588877776652 236778889999999999887654 56666543
No 277
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=34.26 E-value=53 Score=20.35 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=26.0
Q ss_pred eeEEEEccCCCcEEEEEEcCHHHHHHHHHHhcCC
Q 046599 28 IRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK 61 (131)
Q Consensus 28 i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l~g~ 61 (131)
|..+.+.....||-||++...++...++..+.+.
T Consensus 33 i~~v~vp~~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTTCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecCCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 6677766567999999999888877777665544
No 278
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=31.98 E-value=33 Score=16.13 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=12.9
Q ss_pred CCCCcHHHHHHHhhcC
Q 046599 10 DSRVSERDLEDEFRVF 25 (131)
Q Consensus 10 ~~~~t~~~l~~~f~~~ 25 (131)
...++.++|+.+|...
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 3468899999999875
No 279
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=29.97 E-value=58 Score=16.29 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=35.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcC---HHHHHHHHH
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDD---YRDAQDAIR 56 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~---~~~a~~ai~ 56 (131)
++.|.++.-..-...|+..+.....|..+.+.-. .+-+.|.|.. .++...+|+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA-LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT-TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec-CCEEEEEECCCCCHHHHHHHHH
Confidence 5667777666666788999998877887776532 4567888753 334444544
No 280
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.81 E-value=35 Score=18.49 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=10.1
Q ss_pred CCCcEEEEEEcCH
Q 046599 36 RPPGYAFIDFDDY 48 (131)
Q Consensus 36 ~~~g~~fv~f~~~ 48 (131)
..+..++|.|++.
T Consensus 35 ~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 35 SAREVCLVQFEDD 47 (68)
T ss_dssp TTTTEEEEEETTT
T ss_pred cCCcEEEEEEccC
Confidence 3478899999863
No 281
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=29.04 E-value=64 Score=18.58 Aligned_cols=48 Identities=13% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCCCcHHHHHHHhhcC--------CCeeEEEEcc----------CCCc-EEEEEEcCHHHHHHHHHH
Q 046599 10 DSRVSERDLEDEFRVF--------GVIRSVWVAR----------RPPG-YAFIDFDDYRDAQDAIRE 57 (131)
Q Consensus 10 ~~~~t~~~l~~~f~~~--------G~i~~~~i~~----------~~~g-~~fv~f~~~~~a~~ai~~ 57 (131)
.++++++++..+..++ |.|..+.-.+ ...| |.++.|....++.+-++.
T Consensus 11 ~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler 77 (101)
T 1cqm_A 11 NPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLAR 77 (101)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHH
Confidence 4556666655444333 4566655432 1233 788899887776666654
No 282
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=28.22 E-value=1.5e+02 Score=20.57 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHh
Q 046599 18 LEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIREL 58 (131)
Q Consensus 18 l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l 58 (131)
|++.|+.+|--.-..+.+...|+-|+-+-+.+.|+..++.|
T Consensus 47 ~~~~~~~~~~~~~~~~~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 47 IKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHTTSEEEEEECSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEecCCCCceEEcccCCHHHHHHHHHHH
Confidence 45788888754444455555677788888888888776654
No 283
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=24.06 E-value=5.9 Score=21.99 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=9.1
Q ss_pred CceEEEcCCCCCC
Q 046599 1 MSRVYVGNLDSRV 13 (131)
Q Consensus 1 ~~~l~V~~L~~~~ 13 (131)
|++|.|.|||..+
T Consensus 1 M~~i~IRnvpdev 13 (73)
T 3h87_C 1 MSDVLIRDIPDDV 13 (73)
T ss_dssp -CCCCCCCCCHHH
T ss_pred CCceeecCCCHHH
Confidence 6778888888653
No 284
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=23.98 E-value=1.5e+02 Score=19.10 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHHHh
Q 046599 15 ERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIREL 58 (131)
Q Consensus 15 ~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~~l 58 (131)
-++|+.+|..|-... ..+.+.+..|.+.+.|.+.|+..
T Consensus 132 l~~i~~fF~~YK~le------~gK~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 132 KKRIVHFFEHYKDLE------KGKWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHTTTTS------TTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc------CCCcEEEccCcCHHHHHHHHHHH
Confidence 367889999985432 12556777889999988887653
No 285
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=23.86 E-value=69 Score=18.80 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=26.5
Q ss_pred CCCCcHHHHHHHhh-------cCC-CeeEEEEcc----------CCCc-EEEEEEcC-HHHHHHHHH
Q 046599 10 DSRVSERDLEDEFR-------VFG-VIRSVWVAR----------RPPG-YAFIDFDD-YRDAQDAIR 56 (131)
Q Consensus 10 ~~~~t~~~l~~~f~-------~~G-~i~~~~i~~----------~~~g-~~fv~f~~-~~~a~~ai~ 56 (131)
.++++++++..+.. ..| .|..+.-.+ ...| |.++.|.. ..++.+-++
T Consensus 17 ~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~ele 83 (110)
T 2j5a_A 17 KPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELD 83 (110)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHH
Confidence 45666666554443 333 566655432 2234 77888987 556555554
No 286
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=23.57 E-value=52 Score=17.75 Aligned_cols=13 Identities=31% Similarity=0.309 Sum_probs=10.3
Q ss_pred CCCcEEEEEEcCH
Q 046599 36 RPPGYAFIDFDDY 48 (131)
Q Consensus 36 ~~~g~~fv~f~~~ 48 (131)
+..+.++|.|++.
T Consensus 39 ~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 39 ILKQSCFIIFEDS 51 (66)
T ss_dssp TTTTEEEEEETTT
T ss_pred cCCcEEEEEEccC
Confidence 3479999999874
No 287
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=23.26 E-value=88 Score=16.99 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.1
Q ss_pred CCCcEEEEEEcC
Q 046599 36 RPPGYAFIDFDD 47 (131)
Q Consensus 36 ~~~g~~fv~f~~ 47 (131)
..+||+||.-.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 358999998765
No 288
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=23.20 E-value=1.1e+02 Score=17.61 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=18.2
Q ss_pred CCcHHHHHHHhhcCCCeeEEEEc
Q 046599 12 RVSERDLEDEFRVFGVIRSVWVA 34 (131)
Q Consensus 12 ~~t~~~l~~~f~~~G~i~~~~i~ 34 (131)
..+++.|.+.|+..|.|..-.+.
T Consensus 3 ~~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 3 KPILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp CTHHHHHHHHHGGGSCCEEEEET
T ss_pred chHHHHHHHHHhccCCceEeecc
Confidence 34677788999999999887664
No 289
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=22.71 E-value=57 Score=18.30 Aligned_cols=20 Identities=15% Similarity=0.506 Sum_probs=17.1
Q ss_pred cCCCCCCcHHHHHHHhhcCC
Q 046599 7 GNLDSRVSERDLEDEFRVFG 26 (131)
Q Consensus 7 ~~L~~~~t~~~l~~~f~~~G 26 (131)
|.|+..+|+++|.+++.+..
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67888999999999998754
No 290
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.22 E-value=84 Score=24.59 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHhh----cCCCeeEEEEc--c--CCCcEEEEEEcCHHHHHHHHHHhcC
Q 046599 10 DSRVSERDLEDEFR----VFGVIRSVWVA--R--RPPGYAFIDFDDYRDAQDAIRELDG 60 (131)
Q Consensus 10 ~~~~t~~~l~~~f~----~~G~i~~~~i~--~--~~~g~~fv~f~~~~~a~~ai~~l~g 60 (131)
+.+.+--||..+|- .+|-|+.+.|. . ....++++.|.+.++|..++..+-.
T Consensus 352 ~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 352 PRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp SSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHH
Confidence 44444457888873 56778877663 2 2245778999999999998887643
No 291
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=22.20 E-value=89 Score=15.81 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=37.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEccCCCcEEEEEEc----CHHHHHHHHHHh
Q 046599 3 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFD----DYRDAQDAIREL 58 (131)
Q Consensus 3 ~l~V~~L~~~~t~~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~----~~~~a~~ai~~l 58 (131)
++.|.++.-.--...|+..+.+...|..+.+.-. .+-+.|.|. +.++...+|+.+
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 4667777666666788999998877887776432 456788885 345566666643
No 292
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=22.00 E-value=52 Score=13.96 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=9.9
Q ss_pred CcHHHHHHHhhcC
Q 046599 13 VSERDLEDEFRVF 25 (131)
Q Consensus 13 ~t~~~l~~~f~~~ 25 (131)
-++.+|+++.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 3578888888776
No 293
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=21.96 E-value=2.1e+02 Score=20.50 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCeeEEEEccCCCcEEEEEEcCHHHHHHHHH
Q 046599 16 RDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIR 56 (131)
Q Consensus 16 ~~l~~~f~~~G~i~~~~i~~~~~g~~fv~f~~~~~a~~ai~ 56 (131)
..+.++..+||+|..+.+. +.-.|.+.+++.+...+.
T Consensus 36 ~~~~~l~~kYG~i~~~~~g----~~~~vvv~dp~~~~~il~ 72 (487)
T 3n9y_A 36 LHHVQNFQKYGPIYREKLG----NVESVYVIDPEDVALLFK 72 (487)
T ss_dssp HHHHHHHHHHCSEEEEEET----TEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHcCceeeccCC----CCCEEEEcCHHHHHHHHH
Confidence 4566777899999988763 345788889988888764
No 294
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.76 E-value=43 Score=19.48 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=19.2
Q ss_pred EcCCCCCCcHHHHHHHhhc-CCCeeEEEE
Q 046599 6 VGNLDSRVSERDLEDEFRV-FGVIRSVWV 33 (131)
Q Consensus 6 V~~L~~~~t~~~l~~~f~~-~G~i~~~~i 33 (131)
|.+|.+.+|-+||..++.+ .|+.....|
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~~~~y~L 49 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGRTGRYTL 49 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSCCSEEEE
T ss_pred EECCCCCCcHHHHHHHHHhccCCCccEEE
Confidence 4678999999998887654 465444333
No 295
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.60 E-value=58 Score=17.45 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=15.8
Q ss_pred cCCCCCCcHHHHHHHhhcC
Q 046599 7 GNLDSRVSERDLEDEFRVF 25 (131)
Q Consensus 7 ~~L~~~~t~~~l~~~f~~~ 25 (131)
=+|+.+++.++|+..|.+.
T Consensus 13 Lgv~~~as~~eIk~ayr~l 31 (78)
T 2ctp_A 13 LGVSRGASDEDLKKAYRRL 31 (78)
T ss_dssp HTCCTTCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 3789999999999998654
No 296
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=21.49 E-value=76 Score=18.07 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=7.3
Q ss_pred CCCcEEEEE
Q 046599 36 RPPGYAFID 44 (131)
Q Consensus 36 ~~~g~~fv~ 44 (131)
..+||+||+
T Consensus 18 ~~KGfGFI~ 26 (90)
T 3ulj_A 18 VRMGFGFIS 26 (90)
T ss_dssp TTTTEEEEE
T ss_pred CCCCeEEeE
Confidence 458999996
No 297
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=21.42 E-value=59 Score=17.37 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=15.6
Q ss_pred cCCCCCCcHHHHHHHhhcC
Q 046599 7 GNLDSRVSERDLEDEFRVF 25 (131)
Q Consensus 7 ~~L~~~~t~~~l~~~f~~~ 25 (131)
=+|+.+++.++|+..|.+.
T Consensus 9 Lgv~~~as~~~Ik~ayr~l 27 (77)
T 1hdj_A 9 LGLARGASDEEIKRAYRRQ 27 (77)
T ss_dssp HTCCTTCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 3789999999999888653
No 298
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=20.97 E-value=1e+02 Score=16.68 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=10.1
Q ss_pred CCCcEEEEEEcCH
Q 046599 36 RPPGYAFIDFDDY 48 (131)
Q Consensus 36 ~~~g~~fv~f~~~ 48 (131)
..+||+||.-.+.
T Consensus 10 ~~KGfGFI~~~dG 22 (74)
T 2kcm_A 10 AAKKYGFIQGDDG 22 (74)
T ss_dssp TTTTEEEEEETTS
T ss_pred CCCCEEEEecCCC
Confidence 4589999988754
No 299
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=20.86 E-value=1.7e+02 Score=21.58 Aligned_cols=45 Identities=11% Similarity=-0.125 Sum_probs=29.5
Q ss_pred HHHHHhhcCCCeeEEEEcc-CCCcEEEEEEcCHHHHHHHHHHhcCC
Q 046599 17 DLEDEFRVFGVIRSVWVAR-RPPGYAFIDFDDYRDAQDAIRELDGK 61 (131)
Q Consensus 17 ~l~~~f~~~G~i~~~~i~~-~~~g~~fv~f~~~~~a~~ai~~l~g~ 61 (131)
.+.+.+.+.|.|....+.+ -+.|.+||.+-.+++|+++++.|+..
T Consensus 317 piF~~l~~~G~v~~~EM~rtFNmGiGmVlvV~~e~a~~vl~~L~~~ 362 (394)
T 3kiz_A 317 PLFQLIQGQSNTPWEEMYKVFNMGHRLEIYTDAAHAEGMIAIAKKF 362 (394)
T ss_dssp HHHHHHHHHHTCCHHHHHHHSCTTEEEEEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHhcCCcccEEEEECHHHHHHHHHHHHHc
Confidence 3444555555544432221 14688999999999999999988643
No 300
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.68 E-value=62 Score=17.35 Aligned_cols=19 Identities=5% Similarity=0.263 Sum_probs=15.6
Q ss_pred cCCCCCCcHHHHHHHhhcC
Q 046599 7 GNLDSRVSERDLEDEFRVF 25 (131)
Q Consensus 7 ~~L~~~~t~~~l~~~f~~~ 25 (131)
=+|+.+++.++|+..|.+.
T Consensus 13 Lgv~~~a~~~~Ik~ayr~l 31 (79)
T 2dn9_A 13 LGVPRNASQKEIKKAYYQL 31 (79)
T ss_dssp HTCCTTCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 3788999999999888653
No 301
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=20.36 E-value=65 Score=17.02 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=15.1
Q ss_pred cCCCCCCcHHHHHHHhhc
Q 046599 7 GNLDSRVSERDLEDEFRV 24 (131)
Q Consensus 7 ~~L~~~~t~~~l~~~f~~ 24 (131)
-+|+..++.++|+..|.+
T Consensus 14 Lgl~~~a~~~eIk~ayr~ 31 (73)
T 2och_A 14 LGVKPDASDNELKKAYRK 31 (73)
T ss_dssp HTCCTTCCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHH
Confidence 378899999999988864
No 302
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.07 E-value=86 Score=17.17 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=9.4
Q ss_pred CCCcEEEEEEcC
Q 046599 36 RPPGYAFIDFDD 47 (131)
Q Consensus 36 ~~~g~~fv~f~~ 47 (131)
..+||+||.-.+
T Consensus 18 ~~kGfGFI~~~~ 29 (79)
T 1h95_A 18 VRNGYGFINRND 29 (79)
T ss_dssp TTTTEEEEEEGG
T ss_pred CCCCcEEEecCC
Confidence 458999998764
Done!