BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046601
         (233 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9NZI6|TF2L1_HUMAN Transcription factor CP2-like protein 1 OS=Homo sapiens GN=TFCP2L1
           PE=2 SV=1
          Length = 479

 Score = 33.5 bits (75), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 26/99 (26%)

Query: 69  ERNSLP---SLNGRSDL-LKLEHALIAENLWSF--LEKLGACYSVIPCHIYRIWHDEVSC 122
           E+N +P     +G  D  L + HA+  E L +   +EK+   YS+ P HI+R++      
Sbjct: 380 EQNRVPLQQKRDGSGDSNLSVYHAIFLEELTTLELIEKIANLYSISPQHIHRVYR----- 434

Query: 123 FVPFLHVTKSKPLEVRSPLGIHVLMTNGILTAGVLKLCY 161
                          + P GIHV+++N ++     + C+
Sbjct: 435 ---------------QGPTGIHVVVSNEMVQNFQDESCF 458


>sp|P57235|SYGB_BUCAI Glycine--tRNA ligase beta subunit OS=Buchnera aphidicola subsp.
           Acyrthosiphon pisum (strain APS) GN=glyS PE=3 SV=1
          Length = 690

 Score = 31.6 bits (70), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 14  STLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHE---R 70
           +T+     C  +  +   L+ +++FIS+   +QT ES K ++G+  V+   L   E   +
Sbjct: 279 NTIEKKQKCFPIYNSEKKLLPYFIFISN---IQTQESEKIIIGNQRVMHARLSDAEFFFK 335

Query: 71  NSLPSLNGRSDLLKLEHALIAENLWSFLEK 100
           N    +   S LL L+  L   NL S  EK
Sbjct: 336 ND-RKVKLESRLLSLKKVLFQNNLGSLYEK 364


>sp|B8D8T6|SYGB_BUCA5 Glycine--tRNA ligase beta subunit OS=Buchnera aphidicola subsp.
           Acyrthosiphon pisum (strain 5A) GN=glyS PE=3 SV=1
          Length = 690

 Score = 31.6 bits (70), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 14  STLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHE---R 70
           +T+     C  +  +   L+ +++FIS+   +QT ES K ++G+  V+   L   E   +
Sbjct: 279 NTIEKKQKCFPIYNSEKKLLPYFIFISN---IQTQESEKIIIGNQRVMHARLSDAEFFFK 335

Query: 71  NSLPSLNGRSDLLKLEHALIAENLWSFLEK 100
           N    +   S LL L+  L   NL S  EK
Sbjct: 336 ND-RKVKLESRLLSLKKVLFQNNLGSLYEK 364


>sp|B8D740|SYGB_BUCAT Glycine--tRNA ligase beta subunit OS=Buchnera aphidicola subsp.
           Acyrthosiphon pisum (strain Tuc7) GN=glyS PE=3 SV=1
          Length = 690

 Score = 31.6 bits (70), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 14  STLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHE---R 70
           +T+     C  +  +   L+ +++FIS+   +QT ES K ++G+  V+   L   E   +
Sbjct: 279 NTIEKKQKCFPIYNSEKKLLPYFIFISN---IQTQESEKIIIGNQRVMHARLSDAEFFFK 335

Query: 71  NSLPSLNGRSDLLKLEHALIAENLWSFLEK 100
           N    +   S LL L+  L   NL S  EK
Sbjct: 336 ND-RKVKLESRLLSLKKVLFQNNLGSLYEK 364


>sp|Q5R9H0|GYS1_PONAB Glycogen [starch] synthase, muscle OS=Pongo abelii GN=GYS1 PE=2
           SV=1
          Length = 737

 Score = 30.8 bits (68), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 71  NSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVI 108
           +SLP L    D   LE+A++ E  W    K+G  Y+V+
Sbjct: 10  SSLPGLEDWEDEFDLENAVLFEVAWEVANKVGGIYTVL 47


>sp|P13807|GYS1_HUMAN Glycogen [starch] synthase, muscle OS=Homo sapiens GN=GYS1 PE=1
           SV=2
          Length = 737

 Score = 30.8 bits (68), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 71  NSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVI 108
           +SLP L    D   LE+A++ E  W    K+G  Y+V+
Sbjct: 10  SSLPGLEDWEDEFDLENAVLFEVAWEVANKVGGIYTVL 47


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,962,098
Number of Sequences: 539616
Number of extensions: 3259858
Number of successful extensions: 8825
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8823
Number of HSP's gapped (non-prelim): 11
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)