Query 046601
Match_columns 233
No_of_seqs 188 out of 1204
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s81_A Putative aspartate race 100.0 1.2E-38 4E-43 283.6 10.4 169 44-232 53-241 (268)
2 3ojc_A Putative aspartate/glut 100.0 4.2E-36 1.4E-40 261.3 12.7 171 43-232 28-220 (231)
3 1jfl_A Aspartate racemase; alp 100.0 4E-36 1.4E-40 259.0 11.0 169 44-232 28-216 (228)
4 2zsk_A PH1733, 226AA long hypo 100.0 8.3E-34 2.8E-38 244.4 7.8 169 44-232 28-215 (226)
5 3ist_A Glutamate racemase; str 100.0 2.1E-31 7.3E-36 237.0 10.8 150 83-232 45-212 (269)
6 3out_A Glutamate racemase; str 100.0 3.1E-31 1.1E-35 235.7 8.5 148 83-232 47-210 (268)
7 3uhf_A Glutamate racemase; str 100.0 4.8E-31 1.7E-35 235.5 8.4 145 82-232 63-230 (274)
8 2jfn_A Glutamate racemase; cel 100.0 3E-30 1E-34 230.5 6.3 183 14-232 29-230 (285)
9 1zuw_A Glutamate racemase 1; ( 100.0 3.5E-29 1.2E-33 222.2 10.8 185 14-232 11-211 (272)
10 2gzm_A Glutamate racemase; enz 100.0 7E-29 2.4E-33 219.4 10.7 182 14-232 11-210 (267)
11 2jfq_A Glutamate racemase; cel 100.0 1E-28 3.4E-33 220.9 8.3 138 95-232 77-230 (286)
12 2dwu_A Glutamate racemase; iso 99.9 1.7E-28 5.8E-33 218.1 9.0 145 88-232 52-214 (276)
13 2vvt_A Glutamate racemase; iso 99.9 1.7E-28 5.7E-33 219.8 9.0 138 95-232 79-231 (290)
14 2jfz_A Glutamate racemase; cel 99.9 1.3E-27 4.6E-32 209.8 7.8 148 83-232 40-213 (255)
15 2oho_A Glutamate racemase; iso 99.9 2.3E-27 8E-32 210.3 8.3 144 88-232 57-218 (273)
16 1b73_A Glutamate racemase; iso 99.9 1.2E-27 4.2E-32 209.8 3.1 137 94-232 54-203 (254)
17 3qvl_A Putative hydantoin race 99.9 1.9E-22 6.6E-27 176.8 8.3 149 79-231 43-205 (245)
18 2eq5_A 228AA long hypothetical 99.9 1.4E-22 4.8E-27 173.4 4.8 128 97-232 70-208 (228)
19 3ixl_A Amdase, arylmalonate de 99.7 6.6E-19 2.2E-23 153.7 5.4 133 97-232 61-214 (240)
20 2xed_A Putative maleate isomer 99.7 8.4E-19 2.9E-23 155.6 4.1 133 97-232 85-242 (273)
21 2dgd_A 223AA long hypothetical 99.7 4.8E-18 1.6E-22 145.3 3.8 131 95-232 60-205 (223)
22 3ojc_A Putative aspartate/glut 93.4 0.19 6.6E-06 42.6 7.2 78 141-218 3-93 (231)
23 2zsk_A PH1733, 226AA long hypo 88.2 0.089 3.1E-06 44.1 -0.1 88 141-229 2-102 (226)
24 2pju_A Propionate catabolism o 86.5 1.2 4E-05 37.9 5.9 96 97-208 58-161 (225)
25 2q5c_A NTRC family transcripti 84.8 4.1 0.00014 33.5 8.4 94 97-208 47-149 (196)
26 3vav_A 3-methyl-2-oxobutanoate 83.5 1.2 4E-05 39.3 4.7 32 97-129 181-214 (275)
27 1jfl_A Aspartate racemase; alp 82.4 1 3.6E-05 37.4 3.8 87 141-228 2-102 (228)
28 3dah_A Ribose-phosphate pyroph 80.9 1.2 4.1E-05 39.9 3.8 130 78-212 99-254 (319)
29 3qvl_A Putative hydantoin race 80.8 2.9 9.8E-05 35.7 6.1 50 88-137 160-213 (245)
30 3i45_A Twin-arginine transloca 76.9 4.6 0.00016 35.1 6.3 38 91-128 62-102 (387)
31 3ipc_A ABC transporter, substr 76.7 4.2 0.00014 34.6 5.9 53 97-149 64-147 (356)
32 3hut_A Putative branched-chain 75.7 1.8 6.3E-05 37.0 3.3 57 92-148 62-147 (358)
33 2eq5_A 228AA long hypothetical 75.6 4.6 0.00016 33.2 5.7 39 97-135 169-213 (228)
34 1m3u_A 3-methyl-2-oxobutanoate 75.2 3.1 0.0001 36.4 4.6 32 97-129 169-202 (264)
35 3s81_A Putative aspartate race 74.9 2.8 9.6E-05 36.3 4.3 87 140-228 26-127 (268)
36 3snr_A Extracellular ligand-bi 74.4 3 0.0001 35.3 4.3 66 97-162 64-160 (362)
37 3lop_A Substrate binding perip 74.3 3.9 0.00013 35.1 5.1 61 90-150 61-151 (364)
38 3sg0_A Extracellular ligand-bi 72.2 5.2 0.00018 34.2 5.4 43 86-128 73-118 (386)
39 1o66_A 3-methyl-2-oxobutanoate 70.4 3.6 0.00012 36.2 3.9 32 97-129 169-202 (275)
40 3eaf_A ABC transporter, substr 70.4 8.1 0.00028 33.6 6.3 16 133-148 133-149 (391)
41 2ze3_A DFA0005; organic waste 70.0 6.2 0.00021 34.5 5.4 69 75-144 147-230 (275)
42 3lkb_A Probable branched-chain 69.0 4.6 0.00016 35.1 4.3 30 133-162 135-168 (392)
43 4eyg_A Twin-arginine transloca 68.7 4.5 0.00015 34.5 4.1 57 93-149 63-148 (368)
44 1oy0_A Ketopantoate hydroxymet 68.2 5.2 0.00018 35.3 4.5 32 97-129 187-220 (281)
45 3i09_A Periplasmic branched-ch 68.2 5.1 0.00018 34.5 4.4 36 93-128 62-100 (375)
46 1zlp_A PSR132, petal death pro 67.8 9.5 0.00033 34.1 6.2 69 75-145 175-256 (318)
47 4evq_A Putative ABC transporte 67.5 1.6 5.6E-05 37.5 1.1 30 133-162 144-176 (375)
48 3b8i_A PA4872 oxaloacetate dec 66.7 6.3 0.00022 34.7 4.7 79 63-143 143-231 (287)
49 1xg4_A Probable methylisocitra 63.7 11 0.00038 33.2 5.8 69 75-145 153-234 (295)
50 3ixl_A Amdase, arylmalonate de 63.3 5.3 0.00018 33.8 3.5 55 83-137 160-221 (240)
51 3s5j_B Ribose-phosphate pyroph 63.2 1.3 4.5E-05 39.8 -0.4 128 78-211 95-250 (326)
52 2qiw_A PEP phosphonomutase; st 62.9 4.8 0.00016 34.8 3.2 67 76-143 149-233 (255)
53 3n0w_A ABC branched chain amin 62.6 7.2 0.00025 33.7 4.3 36 93-128 64-102 (379)
54 2gzm_A Glutamate racemase; enz 62.4 12 0.00042 31.8 5.7 42 93-134 167-214 (267)
55 1pea_A Amidase operon; gene re 60.9 23 0.00078 30.6 7.3 17 133-149 133-149 (385)
56 3ih1_A Methylisocitrate lyase; 60.9 23 0.00077 31.4 7.2 70 75-145 161-242 (305)
57 2dwu_A Glutamate racemase; iso 60.2 11 0.00039 32.2 5.1 39 97-135 175-219 (276)
58 3td9_A Branched chain amino ac 59.9 18 0.0006 30.8 6.3 40 90-129 69-111 (366)
59 2qh8_A Uncharacterized protein 58.9 45 0.0015 27.8 8.6 70 93-162 60-166 (302)
60 1zuw_A Glutamate racemase 1; ( 56.4 13 0.00046 31.8 4.9 42 93-134 168-215 (272)
61 3out_A Glutamate racemase; str 53.0 13 0.00044 32.1 4.2 31 183-213 51-81 (268)
62 3uhf_A Glutamate racemase; str 51.8 13 0.00046 32.2 4.2 31 183-213 68-98 (274)
63 2vvt_A Glutamate racemase; iso 50.6 10 0.00035 32.9 3.2 40 96-135 191-236 (290)
64 2jfq_A Glutamate racemase; cel 49.8 13 0.00045 32.1 3.8 40 96-135 190-235 (286)
65 3jy6_A Transcriptional regulat 49.3 29 0.00099 28.2 5.7 58 93-150 54-133 (276)
66 3tb6_A Arabinose metabolism tr 48.6 58 0.002 26.4 7.5 57 93-149 62-146 (298)
67 2dgd_A 223AA long hypothetical 48.4 13 0.00045 30.4 3.4 43 86-129 154-202 (223)
68 3bbl_A Regulatory protein of L 48.3 51 0.0017 27.0 7.1 69 94-162 56-152 (287)
69 3k4h_A Putative transcriptiona 47.5 42 0.0014 27.3 6.5 58 92-149 59-140 (292)
70 3gv0_A Transcriptional regulat 46.6 63 0.0021 26.4 7.4 70 93-162 57-154 (288)
71 3eoo_A Methylisocitrate lyase; 46.6 34 0.0012 30.1 6.0 69 75-145 157-238 (298)
72 3h5t_A Transcriptional regulat 45.4 39 0.0013 28.9 6.2 55 93-147 119-196 (366)
73 2rgy_A Transcriptional regulat 44.9 57 0.0019 26.7 6.9 69 94-162 59-155 (290)
74 3ist_A Glutamate racemase; str 44.8 21 0.0007 30.8 4.2 45 184-228 50-96 (269)
75 3hcw_A Maltose operon transcri 44.2 84 0.0029 25.7 7.9 70 93-162 59-158 (295)
76 1b73_A Glutamate racemase; iso 43.5 19 0.00064 30.3 3.7 45 184-228 45-91 (254)
77 3o74_A Fructose transport syst 43.3 55 0.0019 26.2 6.5 56 93-148 49-128 (272)
78 2oho_A Glutamate racemase; iso 43.3 22 0.00076 30.3 4.2 45 184-228 57-103 (273)
79 3d8u_A PURR transcriptional re 43.2 64 0.0022 25.9 6.9 69 94-162 51-147 (275)
80 3lft_A Uncharacterized protein 42.8 83 0.0028 25.9 7.7 70 93-162 53-159 (295)
81 2hjp_A Phosphonopyruvate hydro 42.0 34 0.0012 29.9 5.2 64 75-139 151-227 (290)
82 3gbv_A Putative LACI-family tr 41.4 84 0.0029 25.4 7.4 69 94-162 61-166 (304)
83 2inf_A URO-D, UPD, uroporphyri 41.3 41 0.0014 29.6 5.7 32 97-129 239-271 (359)
84 2jfn_A Glutamate racemase; cel 40.7 24 0.00081 30.4 4.0 35 101-135 195-235 (285)
85 3huu_A Transcription regulator 40.7 64 0.0022 26.6 6.6 70 93-162 74-171 (305)
86 2jfz_A Glutamate racemase; cel 40.4 20 0.00069 30.2 3.4 45 184-228 45-91 (255)
87 2fep_A Catabolite control prot 40.0 62 0.0021 26.5 6.4 56 94-149 64-142 (289)
88 3e61_A Putative transcriptiona 39.4 71 0.0024 25.7 6.6 55 93-148 55-130 (277)
89 3nrs_A Dihydrofolate:folylpoly 39.0 61 0.0021 29.4 6.6 86 122-210 50-151 (437)
90 2iks_A DNA-binding transcripti 38.9 74 0.0025 26.0 6.7 69 94-162 68-165 (293)
91 3clk_A Transcription regulator 38.7 63 0.0022 26.4 6.2 69 94-162 57-152 (290)
92 3l49_A ABC sugar (ribose) tran 38.2 71 0.0024 25.8 6.4 56 93-148 52-133 (291)
93 2xed_A Putative maleate isomer 37.3 18 0.00063 30.9 2.7 72 140-215 25-104 (273)
94 2h3h_A Sugar ABC transporter, 36.6 1.3E+02 0.0044 24.8 7.9 69 94-162 49-150 (313)
95 2eja_A URO-D, UPD, uroporphyri 36.4 64 0.0022 27.9 6.1 32 97-129 225-258 (338)
96 3o21_A Glutamate receptor 3; p 36.3 72 0.0025 27.7 6.5 23 189-211 173-195 (389)
97 3qk7_A Transcriptional regulat 36.2 62 0.0021 26.6 5.8 70 93-162 56-153 (294)
98 3egc_A Putative ribose operon 35.6 77 0.0026 25.8 6.3 57 93-149 55-134 (291)
99 3h5l_A Putative branched-chain 35.5 39 0.0013 29.4 4.6 20 191-210 209-228 (419)
100 1r3s_A URO-D, uroporphyrinogen 33.6 57 0.002 28.7 5.4 27 102-129 255-282 (367)
101 3eul_A Possible nitrate/nitrit 33.5 63 0.0022 23.4 4.9 57 92-148 29-97 (152)
102 3e3m_A Transcriptional regulat 32.8 99 0.0034 26.2 6.7 70 93-162 117-215 (355)
103 2o20_A Catabolite control prot 32.1 1E+02 0.0035 25.8 6.6 56 94-149 111-189 (332)
104 3g1w_A Sugar ABC transporter; 31.6 99 0.0034 25.2 6.3 57 94-150 53-137 (305)
105 3ksm_A ABC-type sugar transpor 31.0 1.5E+02 0.005 23.5 7.1 69 94-162 50-154 (276)
106 3miz_A Putative transcriptiona 30.9 35 0.0012 28.1 3.4 56 92-147 60-138 (301)
107 3bil_A Probable LACI-family tr 30.8 1.4E+02 0.0047 25.3 7.3 57 93-149 113-193 (348)
108 4f11_A Gamma-aminobutyric acid 30.0 1.1E+02 0.0037 26.6 6.6 29 87-115 69-98 (433)
109 3c3k_A Alanine racemase; struc 30.0 1.6E+02 0.0054 23.8 7.3 56 94-149 56-133 (285)
110 4fe7_A Xylose operon regulator 29.8 92 0.0031 27.3 6.1 67 95-162 69-168 (412)
111 1i7w_B E-cadherin, epithelial- 29.1 16 0.00055 29.2 0.9 13 12-24 107-119 (151)
112 3vdp_A Recombination protein R 28.1 43 0.0015 28.3 3.4 37 89-125 136-180 (212)
113 1s2w_A Phosphoenolpyruvate pho 27.1 1E+02 0.0034 26.9 5.7 70 75-145 155-237 (295)
114 3lrt_A Ribose-phosphate pyroph 26.6 9.4 0.00032 33.4 -1.0 129 77-212 89-241 (286)
115 3gyb_A Transcriptional regulat 26.4 1.3E+02 0.0046 24.0 6.2 68 93-162 51-143 (280)
116 3dbi_A Sugar-binding transcrip 25.8 2.8E+02 0.0096 23.0 8.3 69 94-162 111-208 (338)
117 2rjo_A Twin-arginine transloca 25.8 1.8E+02 0.0061 24.2 7.0 30 133-162 127-163 (332)
118 3h5o_A Transcriptional regulat 25.4 1E+02 0.0035 25.9 5.4 57 93-149 109-187 (339)
119 2uz1_A Benzaldehyde lyase; thi 24.4 85 0.0029 29.2 5.0 66 90-156 6-81 (563)
120 2h0a_A TTHA0807, transcription 24.3 46 0.0016 26.8 2.8 56 94-149 47-123 (276)
121 3r7f_A Aspartate carbamoyltran 24.0 29 0.001 30.7 1.6 70 87-157 77-167 (304)
122 3q58_A N-acetylmannosamine-6-p 23.9 1.6E+02 0.0053 24.4 6.2 59 87-148 34-110 (229)
123 3jvd_A Transcriptional regulat 23.9 88 0.003 26.4 4.7 52 93-149 110-183 (333)
124 3rot_A ABC sugar transporter, 23.4 2.3E+02 0.0079 23.0 7.2 69 94-162 53-157 (297)
125 3u5e_c L32, RP73, YL38, 60S ri 23.1 88 0.003 22.8 4.0 42 94-135 30-77 (105)
126 1q6z_A BFD, BFDC, benzoylforma 22.8 1.1E+02 0.0038 28.1 5.5 64 91-155 5-77 (528)
127 1jye_A Lactose operon represso 22.8 2.2E+02 0.0076 23.9 7.1 56 94-149 110-188 (349)
128 3noy_A 4-hydroxy-3-methylbut-2 22.6 89 0.003 28.5 4.6 31 97-127 54-88 (366)
129 4a18_G RPL30; ribosome, eukary 22.3 1.1E+02 0.0036 22.2 4.3 42 94-135 30-77 (104)
130 1ybh_A Acetolactate synthase, 22.2 1.1E+02 0.0037 28.7 5.3 70 90-160 14-94 (590)
131 3v7e_A Ribosome-associated pro 22.1 62 0.0021 22.6 2.8 42 94-135 19-65 (82)
132 2hsg_A Glucose-resistance amyl 21.9 90 0.0031 26.1 4.3 56 94-149 108-186 (332)
133 3lye_A Oxaloacetate acetyl hyd 21.6 2.6E+02 0.009 24.5 7.4 70 76-148 165-248 (307)
134 3lq1_A 2-succinyl-5-enolpyruvy 21.5 1.2E+02 0.0041 28.4 5.5 67 89-156 12-89 (578)
135 2c4w_A 3-dehydroquinate dehydr 21.3 32 0.0011 28.3 1.2 40 188-227 65-108 (176)
136 2uyg_A 3-dehydroquinate dehydr 21.2 27 0.00091 28.0 0.7 39 189-227 54-96 (149)
137 2c31_A Oxalyl-COA decarboxylas 21.2 2E+02 0.0067 26.7 6.9 68 90-158 12-89 (568)
138 2wvg_A PDC, pyruvate decarboxy 21.0 1.2E+02 0.0042 28.1 5.4 60 91-152 6-76 (568)
139 3j21_Z 50S ribosomal protein L 21.0 1.4E+02 0.0047 21.3 4.6 42 94-135 23-70 (99)
140 2vbf_A Branched-chain alpha-ke 20.7 1.9E+02 0.0064 26.9 6.6 66 90-157 27-103 (570)
141 3kwl_A Uncharacterized protein 20.3 74 0.0025 29.9 3.7 38 97-134 443-492 (514)
142 1rrm_A Lactaldehyde reductase; 20.1 1E+02 0.0035 27.2 4.5 66 135-206 26-93 (386)
143 3kjx_A Transcriptional regulat 20.1 90 0.0031 26.3 4.0 57 93-149 115-194 (344)
144 2vbi_A Pyruvate decarboxylase; 20.0 1.3E+02 0.0043 28.0 5.3 59 91-151 6-75 (566)
No 1
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=100.00 E-value=1.2e-38 Score=283.56 Aligned_cols=169 Identities=22% Similarity=0.310 Sum_probs=146.1
Q ss_pred ccCCCCCCceEEeeCchh---hhhhhcCCCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhH
Q 046601 44 LLQTDESGKFLVGSNPVL---SKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWH 117 (233)
Q Consensus 44 ~~~Dqeh~~~iv~~~p~i---t~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~ 117 (233)
.+.||+|+|+++.|+|+| ++++.+++++|.+ .+.+ +|+++|||+|||||||||+++
T Consensus 53 ~~~D~~h~p~~~~s~~~i~~r~~~~~~~g~~~~~------------------~l~~~~~~L~~~Gad~IVIaCNTah~~l 114 (268)
T 3s81_A 53 ASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYR------------------YLERYLHMLEDAGAECIVIPCNTAHYWF 114 (268)
T ss_dssp CSSGGGSCCEEEEECTTSCCHHHHHHHCCCCSHH------------------HHHHHHHHHHHTTCSEEECSCSGGGGGH
T ss_pred hhcCCCCCCEEEeccCCHHHHHHHHHhCCchHHH------------------HHHHHHHHHHHcCCCEEEEeCCCHHHHH
Confidence 458999999999999988 7899998888887 5555 999999999999999999999
Q ss_pred Hhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHcc---------ccCcchhhhHHHHHHhcCCcH
Q 046601 118 DEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQI---------KATMEHTLIPAVDALNRKDVE 184 (233)
Q Consensus 118 del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~---------~~~q~~~v~~~I~~vk~G~~~ 184 (233)
++++ +++||+|| ++++++. .+.+|||||||++|+++++|++.++. .+.++. +++.|+.+|+|..+
T Consensus 115 ~~lr~~~~iPvigiiea~~~aa~-~~~~rVgVLaT~~T~~s~~y~~~l~~~g~~~~v~~~~~~~~-v~~~I~~ve~g~~~ 192 (268)
T 3s81_A 115 DDLQNVAKARMISILDATLGDIP-PSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQAL-VMQAIYTLKRGDKT 192 (268)
T ss_dssp HHHHHHCSSEEECHHHHHHHTSC-TTCCEEEEECCHHHHHTTTTHHHHHHHTCEEECCCHHHHHH-HHHHHHHHHTTCHH
T ss_pred HHHHHHCCCCEEcccHHHHHHHH-hcCCcEEEEechHHhhHHHHHHHHHHcCCceEecCcccHHH-HHHHHHHHHcCCch
Confidence 9999 89999999 5666565 56889999999999999999999981 122333 77889999999876
Q ss_pred HHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCC-CCCCCCeEecCccc
Q 046601 185 GATNLLRRALQVLLARAVNIVILASNDILDLLPP-DDPLFNKCIDPMDA 232 (233)
Q Consensus 185 ~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~-~~~~~v~iIDp~~~ 232 (233)
..++.+++++++|.++|+|+|||||||||++.+. ....++++|||+++
T Consensus 193 ~~~~~l~~~l~~l~~~g~d~vILGCTh~pll~~~l~~~~~v~viDs~~~ 241 (268)
T 3s81_A 193 AAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTAS 241 (268)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECSTTHHHHHTTTGGGSSSCEEEHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHhcCCCCeEEccHHH
Confidence 6789999999999999999999999999999876 33447899999865
No 2
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=100.00 E-value=4.2e-36 Score=261.26 Aligned_cols=171 Identities=16% Similarity=0.122 Sum_probs=136.8
Q ss_pred cccCCCCCCceEEeeCchh---hhhhhcCCCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhh
Q 046601 43 FLLQTDESGKFLVGSNPVL---SKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIW 116 (233)
Q Consensus 43 ~~~~Dqeh~~~iv~~~p~i---t~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~ 116 (233)
....||+|.|.++.+++.+ ++++.++++ +++...+.+ +|+++|||+|||||||||++
T Consensus 28 ~~~~~~~h~~~~~~~s~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~L~~~g~~~iviaCNTa~~~ 90 (231)
T 3ojc_A 28 KAQLGGLHSAKIILYSVDFHEIEQLQAKGDW-----------------QTAAQLLSNAAISLKHAGAEVIVVCTNTMHKV 90 (231)
T ss_dssp HHHHCTTCCCCEEEEECCHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHTCCEEEECSSGGGGG
T ss_pred HHhcCCCCCccceeeCCChhhHHHHHHCCCh-----------------hHHHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 4567999987666555555 455554432 233335555 99999999999999999999
Q ss_pred HHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHccc----------cCcchhhhHHHHH-HhcC
Q 046601 117 HDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIK----------ATMEHTLIPAVDA-LNRK 181 (233)
Q Consensus 117 ~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~~----------~~q~~~v~~~I~~-vk~G 181 (233)
+++++ +++||+|| ++++++...+.+|||||||++|+++++|++.++.. +.++. +++.||+ ++.|
T Consensus 91 ~~~l~~~~~iPvi~i~~~~~~~a~~~~~~rVgvLaT~~T~~s~~y~~~l~~~~g~~v~~p~~~~~~~-v~~~I~~~~~~g 169 (231)
T 3ojc_A 91 ADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQGFYRGRLTEKHGIEVITPDDTDREA-VNRIIYEELCLG 169 (231)
T ss_dssp HHHHHHHHCSCBCCHHHHHHHHHHHTTCCEEEEESCHHHHHSTTTHHHHHHTTCCEEECCCHHHHHH-HHHHHHHTGGGT
T ss_pred HHHHHHhCCCCEeccHHHHHHHHHHcCCCEEEEEcCHHHhhchHHHHHHHhcCCCEEEecCHHHHHH-HHHHHHHHHHcC
Confidence 99999 89999998 77777777668999999999999999999998722 12333 6777886 8888
Q ss_pred Cc-HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCCCCCCeEecCccc
Q 046601 182 DV-EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDA 232 (233)
Q Consensus 182 ~~-~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~~~~v~iIDp~~~ 232 (233)
.. +..++.+.+++++|.++|+|+|||||||||++.+.. ..++++|||+++
T Consensus 170 ~~~~~~~~~~~~~~~~l~~~g~d~vILGCTe~pll~~~~-~~~v~viDs~~~ 220 (231)
T 3ojc_A 170 IISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQ-DASVPVFDTTAI 220 (231)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSCEEECSGGGGGTCCGG-GCSSCEEEHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHhcccc-cCCCcEEchHHH
Confidence 75 567889999999999999999999999999999773 357899999875
No 3
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=100.00 E-value=4e-36 Score=258.97 Aligned_cols=169 Identities=20% Similarity=0.354 Sum_probs=144.5
Q ss_pred ccCCCCCCceEEeeCchh---hhhhhcCCCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhH
Q 046601 44 LLQTDESGKFLVGSNPVL---SKDLLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWH 117 (233)
Q Consensus 44 ~~~Dqeh~~~iv~~~p~i---t~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~ 117 (233)
...||+|+|+++.|+|++ +.++.++.++|.+ .+.+ +|+++|+|+|||||||+|+++
T Consensus 28 ~~~d~~~~~~~~~~~~~i~~r~~~~~~~~~~~~~------------------~l~~~~~~l~~~g~d~iviaCnTa~~~~ 89 (228)
T 1jfl_A 28 AKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPRP------------------QLIWTAKRLEECGADFIIMPCNTAHAFV 89 (228)
T ss_dssp CSSGGGSCCEEEEECTTSCCHHHHHTTSSCCCHH------------------HHHHHHHHHHHHTCSEEECSCTGGGGGH
T ss_pred hhcCCccCcEeEEeCCCHHHHHHHHHcCCchHHH------------------HHHHHHHHHHHcCCCEEEEcCccHHHHH
Confidence 458999999999999987 7888887777777 6655 999999999999999999999
Q ss_pred Hhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHccc---------cCcchhhhHHHH-HHhcCCc
Q 046601 118 DEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIK---------ATMEHTLIPAVD-ALNRKDV 183 (233)
Q Consensus 118 del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~~---------~~q~~~v~~~I~-~vk~G~~ 183 (233)
++++ +++||+|| ++++++...+.+|||||||++|+++++|++.++.. +.|+. +++.|+ .+|.|+.
T Consensus 90 ~~l~~~~~iPvi~i~~~~~~~a~~~~~~rigvlaT~~T~~~~~y~~~l~~~g~~v~~~~~~~~~~-~~~~i~~~~~~g~~ 168 (228)
T 1jfl_A 90 EDIRKAIKIPIISMIEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKD-VMRGIYEGVKAGNL 168 (228)
T ss_dssp HHHHHHCSSCBCCHHHHHHHHHHHTTCSEEEEECCHHHHHHTHHHHHHHHTTCEEECCCHHHHHH-HHHHHHTTGGGTCH
T ss_pred HHHHHhCCCCEechHHHHHHHHHHcCCCeEEEEecHHHhhhhHHHHHHHHCCCeEEccCHHHHHH-HHHHHHHHHHcCCc
Confidence 9999 89999998 77877765468899999999999999999999821 12333 678888 5899986
Q ss_pred HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCCCCCCeEecCccc
Q 046601 184 EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDDPLFNKCIDPMDA 232 (233)
Q Consensus 184 ~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~~~~v~iIDp~~~ 232 (233)
+..++.+.++++++.++|+|+|||||||||++.+... .++++|||+++
T Consensus 169 ~~~~~~l~~~~~~l~~~g~d~iiLGCT~~p~l~~~~~-~~vpviDs~~~ 216 (228)
T 1jfl_A 169 KLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD-LKVPLIDPMDV 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECSHHHHHHCCGGG-CSSCEECHHHH
T ss_pred hHHHHHHHHHHHHHHHCCcCEEEECCCChHhhhhhhc-CCCCEEChHHH
Confidence 6678899999999998999999999999999987633 57899999764
No 4
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.3e-34 Score=244.42 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=136.3
Q ss_pred ccCCCCCCceEEeeCchhhhh-hhcCCCCCCCCCCCcchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhHHh
Q 046601 44 LLQTDESGKFLVGSNPVLSKD-LLSHERNSLPSLNGRSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWHDE 119 (233)
Q Consensus 44 ~~~Dqeh~~~iv~~~p~it~~-il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~de 119 (233)
...||+|.+.++.++|.+.+. ++. .+.+++...+.+ +|+++|+|+|||||||+|+++++
T Consensus 28 ~~~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~L~~~g~d~iviaCnTa~~~~~~ 90 (226)
T 2zsk_A 28 EKFEKYFYPELIIYSINFKEFFQNP-----------------EGWEGRKKILINAAKALERAGAELIAFAANTPHLVFDD 90 (226)
T ss_dssp HHSSTTCCCCEEEEECCTHHHHTCT-----------------THHHHHHHHHHHHHHHHHHHTCSEEEESSSGGGGGHHH
T ss_pred HhcCCccCCeeEEeCCCHHHHHhhc-----------------CCcchHHHHHHHHHHHHHHcCCCEEEECCCcHHHHHHH
Confidence 458999999999999887322 211 123444445555 99999999999999999999999
Q ss_pred hc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHcc---------ccCcchhhhHHHHH-HhcCCcHH
Q 046601 120 VS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQI---------KATMEHTLIPAVDA-LNRKDVEG 185 (233)
Q Consensus 120 l~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~---------~~~q~~~v~~~I~~-vk~G~~~~ 185 (233)
++ +++|++|| ++++++...+.+|||||||++|+++++|++.++. ++.++. +++.||+ +|.|..+
T Consensus 91 l~~~~~iPvi~i~~a~~~~~~~~~~~rigvlaT~~T~~~~~y~~~l~~~g~~v~~~~~~~~~~-v~~~i~~~~~~g~~~- 168 (226)
T 2zsk_A 91 VQREVNVPMVSIIDAVAEEILKRGVRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEE-LNRIIFEELAFGNLK- 168 (226)
T ss_dssp HHHHCSSCBCCHHHHHHHHHHHTTCCEEEEESSTTTTSCHHHHHHHHTTTCEEECCCHHHHHH-HHHHHHHTGGGTCCT-
T ss_pred HHHhCCCCEeccHHHHHHHHHHcCCCeEEEEeCHHHHhhhHHHHHHHHCCCEEEccCHHHHHH-HHHHHHHHHHcCchh-
Confidence 99 89999998 7777776656889999999999999999999972 122333 6778875 8888865
Q ss_pred HHHHHHHHHHHHhh-CCCCEEEEcCCccccCCCCCCCCCCeEecCccc
Q 046601 186 ATNLLRRALQVLLA-RAVNIVILASNDILDLLPPDDPLFNKCIDPMDA 232 (233)
Q Consensus 186 ~~~~l~~~~~~l~~-~gaD~vILGCTElPll~~~~~~~~v~iIDp~~~ 232 (233)
.++.++++++++.+ +|+|+|||||||||++.+.. ..++++|||+++
T Consensus 169 ~~~~l~~~~~~l~~~~g~d~iiLGCT~~p~l~~~~-~~~vpviDs~~~ 215 (226)
T 2zsk_A 169 NKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQG-DVSVEVFDSAEI 215 (226)
T ss_dssp THHHHHHHHHHHHHHSCCSEEEECSSSGGGTCCGG-GSSSEEEEHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEECCCCHHHHhhcc-CCCCcEEChHHH
Confidence 67889999999998 89999999999999997763 346899999864
No 5
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=99.97 E-value=2.1e-31 Score=236.98 Aligned_cols=150 Identities=17% Similarity=0.108 Sum_probs=122.5
Q ss_pred hhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhh-HHhhc--CCCCeech--hchHhHH-hhCCCeEEEEcCHHHHh
Q 046601 83 LKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIW-HDEVS--CFVPFLHV--TKSKPLE-VRSPLGIHVLMTNGILT 153 (233)
Q Consensus 83 ~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~-~del~--~~vPii~i--~tv~~~~-~~~~~rVGVLAT~gTi~ 153 (233)
|++++++|.+++.+ +|+++|||+|||||||||++ +++++ +++||+|| ++++.+. ..+.+|||||||++|++
T Consensus 45 G~ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvigii~pa~~~A~~~~~~~~IGVLaT~~Ti~ 124 (269)
T 3ist_A 45 GPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVE 124 (269)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEeecHHHHHHHHHHcCCCeEEEEeccchhh
Confidence 57888999998888 99999999999999999995 89999 89999996 6777654 34588999999999999
Q ss_pred hhhHHHHHccccCcch----hhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC---CCCCC
Q 046601 154 AGVLKLCYQIKATMEH----TLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPD---DPLFN 224 (233)
Q Consensus 154 sglY~~~l~~~~~q~~----~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~---~~~~v 224 (233)
+++|++.++......+ -....++.+|+|.. +.+++.+++++++|.++|+|++||||||||++.+.. .+.++
T Consensus 125 s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCTh~pll~~~i~~~~~~~v 204 (269)
T 3ist_A 125 SMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGV 204 (269)
T ss_dssp HTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECSTTGGGGHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHcCCCC
Confidence 9999999983211111 02234456888874 467889999999999999999999999999998751 23468
Q ss_pred eEecCccc
Q 046601 225 KCIDPMDA 232 (233)
Q Consensus 225 ~iIDp~~~ 232 (233)
++|||+++
T Consensus 205 ~vIDs~~~ 212 (269)
T 3ist_A 205 AVINSGEE 212 (269)
T ss_dssp EEECTHHH
T ss_pred eEECcHHH
Confidence 99999864
No 6
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=99.97 E-value=3.1e-31 Score=235.69 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=119.0
Q ss_pred hhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhh-hHHhhc--C-CCCeech--hchHhHHhhCCCeEEEEcCHHHHh
Q 046601 83 LKLEHALIAENLWS---FLEKLGACYSVIPCHIYRI-WHDEVS--C-FVPFLHV--TKSKPLEVRSPLGIHVLMTNGILT 153 (233)
Q Consensus 83 ~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~-~~del~--~-~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~ 153 (233)
|+++.++|.+.+.+ +|+++|||+|||||||||+ ++++++ + ++||+|| +++++ ..+.+|||||||++|++
T Consensus 47 G~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvigiiep~~~~--~~~~~~IGVLaT~~Ti~ 124 (268)
T 3out_A 47 GTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAGVSL--VDNLNTVGVIATPATIN 124 (268)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEEHHHHHHHT--TTTCSEEEEEECHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEeccHHHHHH--hccCCeEEEEecCcccc
Confidence 45667777777777 9999999999999999998 579999 7 8999997 77777 44588999999999999
Q ss_pred hhhHHHHHccccCcchh----hhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCC-CCCCCCeE
Q 046601 154 AGVLKLCYQIKATMEHT----LIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPP-DDPLFNKC 226 (233)
Q Consensus 154 sglY~~~l~~~~~q~~~----v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~-~~~~~v~i 226 (233)
+++|++.++......++ ....+..+|+|.. +..++.+++++++|.++|+|+|||||||||++.+. ..+.++++
T Consensus 125 s~~y~~~l~~~~~~~~V~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iILGCTh~pll~~~i~~~~~v~v 204 (268)
T 3out_A 125 SNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKILDVKL 204 (268)
T ss_dssp HTHHHHHHHHHCTTSEEEEEECTTHHHHHHTTCCSSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHHHHHHCCSEE
T ss_pred cHHHHHHHHHhCCCCEEecCCChHHHHHHHcCCcCCHHHHHHHHHHHHHHHhCCCCEEEECCCChHHHHHHHhcCCCCce
Confidence 99999999832111110 1223445778874 56788999999999999999999999999999876 22457899
Q ss_pred ecCccc
Q 046601 227 IDPMDA 232 (233)
Q Consensus 227 IDp~~~ 232 (233)
|||+++
T Consensus 205 iD~~~~ 210 (268)
T 3out_A 205 IDPSLQ 210 (268)
T ss_dssp ECCHHH
T ss_pred echHHH
Confidence 999864
No 7
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=99.97 E-value=4.8e-31 Score=235.47 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=118.8
Q ss_pred hhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhh-HHhhc--CCCCeech--hchHhHHhh---CCCeEEEEcCHH
Q 046601 82 LLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIW-HDEVS--CFVPFLHV--TKSKPLEVR---SPLGIHVLMTNG 150 (233)
Q Consensus 82 ~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~-~del~--~~vPii~i--~tv~~~~~~---~~~rVGVLAT~g 150 (233)
-|+++.++|.+++.+ +|+++|||+|||||||||++ ++++| +++||+|| ++++++.+. +.+|||||||++
T Consensus 63 YG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvigiiepa~~~a~~~~~t~~~~IGVLaT~~ 142 (274)
T 3uhf_A 63 YGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKA 142 (274)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEECSHHHHHHHHHHHHCCTTSCEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEcCCHHHHHHHHHhcccCCCeEEEEeccc
Confidence 367889999999988 99999999999999999987 89999 89999998 888887654 588999999999
Q ss_pred HHhhhhHHHHHcccc-------CcchhhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC--
Q 046601 151 ILTAGVLKLCYQIKA-------TMEHTLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPD-- 219 (233)
Q Consensus 151 Ti~sglY~~~l~~~~-------~q~~~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~-- 219 (233)
|++++.|++.+.... .... +++. |++|.. +..++.++++++++. |+|++||||||||++.+..
T Consensus 143 Ti~s~~Y~~~l~~~~~~~V~~~~~~~-lV~~---IE~g~~~~~~~~~~~~~~l~~l~--g~D~iILGCTh~PlL~~~i~~ 216 (274)
T 3uhf_A 143 TIKSEEYQKRLLSQGYTNINALATGL-FVPM---VEEGIFEGDFLQSAMEYYFKNIT--TPDALILACTHFPLLGRSLSK 216 (274)
T ss_dssp HHHHTHHHHHHHTTTCCCEEEEECTT-HHHH---HHTTCCSSHHHHHHHHHHHTTCC--CCSEEEECSTTGGGGHHHHHH
T ss_pred cccHHHHHHHHHHcCCceEEecCCHH-HHHH---HHcCCCCCHHHHHHHHHHHHHhc--CCCEEEECCCChHHHHHHHHH
Confidence 999999999998321 1122 3333 566764 456788888888877 9999999999999998762
Q ss_pred -CCCCCeEecCccc
Q 046601 220 -DPLFNKCIDPMDA 232 (233)
Q Consensus 220 -~~~~v~iIDp~~~ 232 (233)
.+.++++|||+++
T Consensus 217 ~~~~~v~lIDs~~~ 230 (274)
T 3uhf_A 217 YFGDKTKLIHSGDA 230 (274)
T ss_dssp HHCTTCEEEEHHHH
T ss_pred HcCCCCEEEcCHHH
Confidence 2346899999864
No 8
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=99.96 E-value=3e-30 Score=230.47 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=132.3
Q ss_pred cccCCCccchhHHHhhhhhhhhhccCCcccccCCCCCCceEEeeCchhhhhhhcCCCCCCCCCCCcchhhhhhHHHHHHH
Q 046601 14 STLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAEN 93 (233)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dqeh~~~iv~~~p~it~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~ 93 (233)
|.+|.++-.+.+.+..-+- -+ .-..||+|.|+...+.+.+.+... .
T Consensus 29 SGvGGltv~~~i~~~lP~~----~~----iy~~D~~~~PyG~~s~~~i~~~~~--------------------------~ 74 (285)
T 2jfn_A 29 SGVGGLSVYDEIRHLLPDL----HY----IYAFDNVAFPYGEKSEAFIVERVV--------------------------A 74 (285)
T ss_dssp SSSTHHHHHHHHHHHSTTS----EE----EEEECTTTCCTTTSCHHHHHHHHH--------------------------H
T ss_pred CCccHHHHHHHHHHhCCCC----Ce----EEeeccCCCCCccCCHHHHHHHHH--------------------------H
Confidence 5578888777776632111 01 112489899986666655533221 2
Q ss_pred HHH-HHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech-hchHhHH-hhCCCeEEEEcCHHHHhhhhHHHHHccc---
Q 046601 94 LWS-FLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV-TKSKPLE-VRSPLGIHVLMTNGILTAGVLKLCYQIK--- 164 (233)
Q Consensus 94 l~~-~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i-~tv~~~~-~~~~~rVGVLAT~gTi~sglY~~~l~~~--- 164 (233)
+.+ .+++.|||+|||||||+|. ++++++ +++||+|| ++++++. ..+.+|||||||++|+++++|++.++..
T Consensus 75 i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi~~a~~~a~~~~~~~rIgVLaT~~T~~s~~y~~~l~~~g~~ 154 (285)
T 2jfn_A 75 IVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANE 154 (285)
T ss_dssp HHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECCCCCHHHHHHHCSSSEEEEEECTTGGGCHHHHHHHHHSCTT
T ss_pred HHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEehHHHHHHHHHhcCCCEEEEEEcHHHHhhHHHHHHHHHhCCC
Confidence 333 4466999999999999995 799999 89999999 6665543 3458899999999999999999999821
Q ss_pred -----cCcchhhhHHHHHHhcCCcHHHHHHHHHHHHHHhh--CCCCEEEEcCCccccCCCCC---CCCCCeEecCccc
Q 046601 165 -----ATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLA--RAVNIVILASNDILDLLPPD---DPLFNKCIDPMDA 232 (233)
Q Consensus 165 -----~~q~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~--~gaD~vILGCTElPll~~~~---~~~~v~iIDp~~~ 232 (233)
..+.. +++.|+..+.+. +..++.++++++++.+ .|+|+|||||||||++.+.. .+.++++|||+++
T Consensus 155 ~~v~~~~~~~-lv~~ie~~~~~~-~~~~~~l~~~l~~l~~~~~~~D~IVLGCTh~p~l~~~i~~~lg~~vpviDs~~a 230 (285)
T 2jfn_A 155 CQIEMLGSAE-MVELAEAKLHGE-DVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAA 230 (285)
T ss_dssp SEEEEEECHH-HHHHHHHHHHTC-CCCHHHHHHHTHHHHTCSSCCSEEEECSTTGGGGHHHHHHHSCTTCEEECSHHH
T ss_pred CEEeCCCCHH-HHHHHHhcccCC-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCcHHHHHHHHHhcCCCCEEECcHHH
Confidence 12334 667787755554 3357788999999876 58999999999999987652 2336899999864
No 9
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=99.96 E-value=3.5e-29 Score=222.19 Aligned_cols=185 Identities=12% Similarity=0.084 Sum_probs=134.3
Q ss_pred cccCCCccchhHHHhhhhhhhhhccCCcccccCCCCCCceEEeeCchhhhhhhcCCCCCCCCCCCcchhhhhhHHHHHHH
Q 046601 14 STLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAEN 93 (233)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dqeh~~~iv~~~p~it~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~ 93 (233)
|.+|.|+--|.+.+..-+-- ..-..|+.|.|+-..+.+.+.+.. ..
T Consensus 11 SGvGGltv~~~i~~~lP~~~--------~iy~~D~~~~PyG~~s~~~i~~~~--------------------------~~ 56 (272)
T 1zuw_A 11 SGVGGLTVAKEIMRQLPKEN--------IIYVGDTKRCPYGPRPEEEVLQYT--------------------------WE 56 (272)
T ss_dssp SSSTTHHHHHHHHHHSTTCC--------EEEEECGGGCCCSSSCHHHHHHHH--------------------------HH
T ss_pred CCcchHHHHHHHHHhCCCCc--------EEEeccCCCCCCCCCCHHHHHHHH--------------------------HH
Confidence 56778887777765422110 112357777776444443332221 13
Q ss_pred HHHHHHH-cCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccccC
Q 046601 94 LWSFLEK-LGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIKAT 166 (233)
Q Consensus 94 l~~~Le~-~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~~~ 166 (233)
+.++|++ +|||+|||||||||+ ++++++ +++||+|| ++++++.. .+.+|||||||++|++++.|++.++....
T Consensus 57 ~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~~~~~rIgVlaT~~T~~s~~y~~~i~~~~~ 136 (272)
T 1zuw_A 57 LTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVIQPGARAAIKVTDNQHIGVIGTENTIKSNAYEEALLALNP 136 (272)
T ss_dssp HHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHTTHHHHHHHHHCT
T ss_pred HHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcccHHHHHHHHHhcCCCEEEEEEChhhhhhhHHHHHHHHhCC
Confidence 3448999 999999999999997 699999 89999996 78877654 45789999999999999999999983211
Q ss_pred cchh----hhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---CCCCeEecCccc
Q 046601 167 MEHT----LIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---PLFNKCIDPMDA 232 (233)
Q Consensus 167 q~~~----v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~~~v~iIDp~~~ 232 (233)
..++ ....++.+++|.. +..++.++++++++.++|+|++||||||||++.+... +.++++|||+++
T Consensus 137 ~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~ 211 (272)
T 1zuw_A 137 DLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIISSGDE 211 (272)
T ss_dssp TCEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEESTTGGGGHHHHHHHHCTTSEEEEHHHH
T ss_pred CCEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHHHHHcCCCCeEECcHHH
Confidence 1110 2334566888875 5577889999999999999999999999999876621 447899999764
No 10
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=99.95 E-value=7e-29 Score=219.45 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=134.4
Q ss_pred cccCCCccchhHHHhhhhhhhhhccCCcccccCCCCCCceEEeeCchhhhhhhcCCCCCCCCCCCcchhhhhhHHHHHHH
Q 046601 14 STLGSLSCCRSLQKTRLNLIQFWLFISSSFLLQTDESGKFLVGSNPVLSKDLLSHERNSLPSLNGRSDLLKLEHALIAEN 93 (233)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dqeh~~~iv~~~p~it~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~ 93 (233)
|.+|.|+--+.+.+..-+. .+-| ..|+.|.|+...+. +++.+.
T Consensus 11 SGvGGltv~~~i~~~lP~~-------~~iy-~~D~~~~Pyg~~s~-----------------------------~~i~~~ 53 (267)
T 2gzm_A 11 SGVGGLTVAKELIRQLPKE-------RIIY-LGDTARCPYGPRSR-----------------------------EEVRQF 53 (267)
T ss_dssp SSSTTHHHHHHHHHHCTTS-------CEEE-EECTTTCCCTTSCH-----------------------------HHHHHH
T ss_pred CCccHHHHHHHHHHHCCCC-------CEEE-ecCCCCCCCCCCCH-----------------------------HHHHHH
Confidence 5678888888777542211 1111 35777777543333 334444
Q ss_pred HHH---HHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccc
Q 046601 94 LWS---FLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIK 164 (233)
Q Consensus 94 l~~---~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~ 164 (233)
+.+ +|+++|+|+|||||||+|. ++++++ +++||+|| ++++++.. .+.+|||||||++|++++.|++.++..
T Consensus 54 ~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~ep~~~~A~~~~~~~rIgVlaT~~T~~~~~y~~~l~~~ 133 (267)
T 2gzm_A 54 TWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKVTNTYHVGIIGTIGTVKSGAYEEALKSI 133 (267)
T ss_dssp HHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSCEEEEEECHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeecHHHHHHHHHccCCCEEEEEEChHHhccHHHHHHHHHh
Confidence 444 8999999999999999996 799999 89999996 88887754 357899999999999999999999832
Q ss_pred cCcchh----hhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---CCCCeEecCccc
Q 046601 165 ATMEHT----LIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---PLFNKCIDPMDA 232 (233)
Q Consensus 165 ~~q~~~----v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~~~v~iIDp~~~ 232 (233)
....++ ....++.++.|.. +..++.++++++++.++|+|++||||||||++.+... +.++++|||+++
T Consensus 134 ~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~ 210 (267)
T 2gzm_A 134 NNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDE 210 (267)
T ss_dssp CTTCEEEEEECTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHH
T ss_pred CCCCEEeccCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcccChHHHHHHHHHHcCCCCEEECcHHH
Confidence 111110 1234556888875 5678889999999999999999999999999876622 447899999764
No 11
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=99.95 E-value=1e-28 Score=220.86 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=111.0
Q ss_pred HHHHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccccCcc
Q 046601 95 WSFLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIKATME 168 (233)
Q Consensus 95 ~~~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~~~q~ 168 (233)
.++|+++|+|+|||||||+|. ++++++ +++||+|| ++++++.. .+.+|||||||++|++++.|++.++......
T Consensus 77 ~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi~e~a~~~A~~~~~~~rIgVLaT~~T~~~~~y~~~l~~~~~~~ 156 (286)
T 2jfq_A 77 ARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHV 156 (286)
T ss_dssp HHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEESHHHHHHHHHHHCSSSEEEEEECHHHHHHTHHHHHHHHHCTTC
T ss_pred HHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEeccHHHHHHHHHhcCCCEEEEEeChHHhcchHHHHHHHHhCCCC
Confidence 348999999999999999997 699999 89999997 77877654 4578999999999999999999998321111
Q ss_pred hh----hhHHHHHHhcCCc--HHH-HHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC---CCCCCeEecCccc
Q 046601 169 HT----LIPAVDALNRKDV--EGA-TNLLRRALQVLLARAVNIVILASNDILDLLPPD---DPLFNKCIDPMDA 232 (233)
Q Consensus 169 ~~----v~~~I~~vk~G~~--~~~-~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~---~~~~v~iIDp~~~ 232 (233)
++ ....++.+++|.. +.. ++.++++++++.++|+|+|||||||||++.+.. .+.++++|||+++
T Consensus 157 ~v~~~~~~~~v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a 230 (286)
T 2jfq_A 157 EVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLE 230 (286)
T ss_dssp EEEEEECTTHHHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEESSSGGGGHHHHHHHTTTCSEEEEHHHH
T ss_pred EEEecCCHHHHHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEcCcCHHHHHHHHHHHcCCCCEEECcHHH
Confidence 10 2334566888874 556 888999999999889999999999999987652 2447899999764
No 12
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=99.95 E-value=1.7e-28 Score=218.07 Aligned_cols=145 Identities=13% Similarity=0.092 Sum_probs=113.6
Q ss_pred HHHHHHHHH---HHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHH
Q 046601 88 ALIAENLWS---FLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLK 158 (233)
Q Consensus 88 ~~I~~~l~~---~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~ 158 (233)
+++.+.+.+ +|+++|+|+|||||||+|. ++++++ +++||+|| ++++++.. .+.+|||||||++|++++.|+
T Consensus 52 ~~i~~~~~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigiiep~~~~A~~~~~~~rIgVlaT~~T~~s~~y~ 131 (276)
T 2dwu_A 52 EEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKVTKKGKIGVIGTVGTIQSNMYE 131 (276)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEeccHHHHHHHHHhcCCCeEEEEeChhhhhhHHHH
Confidence 344444444 8999999999999999995 799999 89999996 78877654 457899999999999999999
Q ss_pred HHHccccCcchh----hhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---CCCCeEecC
Q 046601 159 LCYQIKATMEHT----LIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---PLFNKCIDP 229 (233)
Q Consensus 159 ~~l~~~~~q~~~----v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~~~v~iIDp 229 (233)
+.++......++ ....++.+++|.. +..++.++++++++.++|+|+|||||||||++.+... +.++++|||
T Consensus 132 ~~i~~~~~~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh~p~l~~~i~~~~~~~v~vIDs 211 (276)
T 2dwu_A 132 KALHELDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISS 211 (276)
T ss_dssp HHHHHHCTTCEEEEEECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEH
T ss_pred HHHHHhCCCCEEEeeeCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHcCCCCeEECc
Confidence 998732111110 2234456888875 5577899999999998999999999999999877621 447899999
Q ss_pred ccc
Q 046601 230 MDA 232 (233)
Q Consensus 230 ~~~ 232 (233)
+++
T Consensus 212 ~~~ 214 (276)
T 2dwu_A 212 AEE 214 (276)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 13
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=99.95 E-value=1.7e-28 Score=219.79 Aligned_cols=138 Identities=19% Similarity=0.167 Sum_probs=111.2
Q ss_pred HHHHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccccCcc
Q 046601 95 WSFLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIKATME 168 (233)
Q Consensus 95 ~~~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~~~q~ 168 (233)
.++|+++|||+|||||||+|+ ++++++ +++||+|| ++++++.. .+.+|||||||++|++++.|++.++......
T Consensus 79 ~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigiiepa~~~A~~~~~~~rIgVLaT~~T~~s~~y~~~l~~~~~~~ 158 (290)
T 2vvt_A 79 ADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAI 158 (290)
T ss_dssp HHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESSHHHHHHHHHHCSSSEEEEEECHHHHHTTHHHHHHHTTCTTS
T ss_pred HHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcccHHHHHHHHHhcCCCEEEEEeCcHhhhhHHHHHHHHHhCCCC
Confidence 348999999999999999995 599999 89999996 78877654 4578999999999999999999998321111
Q ss_pred h----hhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---CCCCeEecCccc
Q 046601 169 H----TLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---PLFNKCIDPMDA 232 (233)
Q Consensus 169 ~----~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~~~v~iIDp~~~ 232 (233)
+ -....++.+++|.. +..++.++++++++.++|+|+|||||||||++.+... +.++++|||+++
T Consensus 159 ~v~~~~~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a 231 (290)
T 2vvt_A 159 EVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAE 231 (290)
T ss_dssp EEEEEECTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHH
T ss_pred EEEeccCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCcCHHHHHHHHHHHcCCCCeEECcHHH
Confidence 1 02334556888874 5678889999999998899999999999999877621 447899999764
No 14
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=99.94 E-value=1.3e-27 Score=209.78 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=113.4
Q ss_pred hhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh---hCCCeEEEEcCHHH
Q 046601 83 LKLEHALIAENLWS---FLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV---RSPLGIHVLMTNGI 151 (233)
Q Consensus 83 ~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~---~~~~rVGVLAT~gT 151 (233)
|+++.+++.+.+.+ +|+++|+|+|||||||+|. ++++++ +++||+|| ++++++.. .+.+|||||||++|
T Consensus 40 g~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvigii~~av~~A~~~~~~~~~rigVlaT~~T 119 (255)
T 2jfz_A 40 GTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKAT 119 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEECSSHHHHHHHHHHCCCTTSCEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHhhcCCCCEEEEEECHHH
Confidence 34566777778777 8999999999999999996 799999 89999995 77776644 45789999999999
Q ss_pred HhhhhHHHHHccccCcchh---hhH-HHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCCC---C-
Q 046601 152 LTAGVLKLCYQIKATMEHT---LIP-AVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPDD---P- 221 (233)
Q Consensus 152 i~sglY~~~l~~~~~q~~~---v~~-~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~~---~- 221 (233)
++++.|++.++... ...+ -.+ ....+++|.. +..++.+++++++ .+.|+|++||||||||++.+... +
T Consensus 120 ~~~~~y~~~l~~~g-~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~~~~-~~~~~d~iILGCTh~p~l~~~i~~~~~~ 197 (255)
T 2jfz_A 120 IQSNAYDNALKQQG-YLNISHLATSLFVPLIEESILEGELLETCMHYYFTP-LEILPEVIILGCTHFPLIAQKIEGYFMG 197 (255)
T ss_dssp HHHTHHHHHHHHTT-CCCEEEEECTTHHHHHHTTCCSSHHHHHHHHHHHTT-CCSCCSEEEEESTTGGGGHHHHHHHHHH
T ss_pred HhChHHHHHHHHcC-CCEEEecChHHHHHHHHhcccCCHHHHHHHHHHHhh-hcCCCCEEEEcCcChHHHHHHHHHHhCc
Confidence 99999999998322 1110 011 1233666653 4567788888888 66799999999999999876521 1
Q ss_pred -----CCCeEecCccc
Q 046601 222 -----LFNKCIDPMDA 232 (233)
Q Consensus 222 -----~~v~iIDp~~~ 232 (233)
.++++|||+++
T Consensus 198 ~~~~~~~v~viDs~~~ 213 (255)
T 2jfz_A 198 HFALPTPPLLIHSGDA 213 (255)
T ss_dssp HSCCSSCCEEEEHHHH
T ss_pred cccCCCCCEEECcHHH
Confidence 35899999764
No 15
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=99.94 E-value=2.3e-27 Score=210.27 Aligned_cols=144 Identities=18% Similarity=0.190 Sum_probs=109.0
Q ss_pred HHHHHHHHH---HHHHcCCcEEeeccchhhhh-HHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHH
Q 046601 88 ALIAENLWS---FLEKLGACYSVIPCHIYRIW-HDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLK 158 (233)
Q Consensus 88 ~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~-~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~ 158 (233)
+++...+.+ +|+++|+|+|||||||+|.+ +++++ +++||+|| ++++++.. .+.+|||||||++|++++.|+
T Consensus 57 ~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~epa~~~A~~~~~~~rIgVlaT~~T~~~~~y~ 136 (273)
T 2oho_A 57 KQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASDIYR 136 (273)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEeccHHHHHHHHHhcCCCeEEEEECchhhcchHHH
Confidence 444445555 89999999999999999965 89999 89999996 77777654 357899999999999999999
Q ss_pred HHHccccCcchhh-h---HHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC-C--CCCCeEecC
Q 046601 159 LCYQIKATMEHTL-I---PAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPD-D--PLFNKCIDP 229 (233)
Q Consensus 159 ~~l~~~~~q~~~v-~---~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~-~--~~~v~iIDp 229 (233)
+.++.....-+++ . .....+++|.. +..++.++++++++.++ +|+|||||||||++.+.. . +.++++|||
T Consensus 137 ~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs 215 (273)
T 2oho_A 137 KKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCTHYPLLRPIIQNVMGPSVKLIDS 215 (273)
T ss_dssp HHHHHHCTTSEEEEEECTTHHHHHCC-----HHHHHHHHHHHTTTTTS-CSEEEECSTTGGGGHHHHHHHHCTTSEEEEH
T ss_pred HHHHHhCCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCCCHHHHHHHHHHHhCCCCEEECc
Confidence 9998321111101 1 12234778875 45688999999999888 999999999999987652 1 346899999
Q ss_pred ccc
Q 046601 230 MDA 232 (233)
Q Consensus 230 ~~~ 232 (233)
+++
T Consensus 216 ~~~ 218 (273)
T 2oho_A 216 GAE 218 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 16
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=99.93 E-value=1.2e-27 Score=209.75 Aligned_cols=137 Identities=15% Similarity=0.089 Sum_probs=107.0
Q ss_pred HHHHHHHcCCcEEeeccchhhh-hHHhhc--CCCCeech--hchHhHHh-hCCCeEEEEcCHHHHhhhhHHHHHccccCc
Q 046601 94 LWSFLEKLGACYSVIPCHIYRI-WHDEVS--CFVPFLHV--TKSKPLEV-RSPLGIHVLMTNGILTAGVLKLCYQIKATM 167 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTAH~-~~del~--~~vPii~i--~tv~~~~~-~~~~rVGVLAT~gTi~sglY~~~l~~~~~q 167 (233)
..++|+++|+|+|||||||+|. ++++++ +++|++|| ++++++.. .+.+|||||||++|+++++|++.++.....
T Consensus 54 ~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~e~~~~~A~~~~~~~rigVlaT~~T~~~~~y~~~l~~~g~~ 133 (254)
T 1b73_A 54 CAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEGGAD 133 (254)
T ss_dssp HHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESHHHHHHHHHHHCSSCEEEEEECHHHHHHCHHHHHHHTTSCE
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeHHHHHHHHHccCCCEEEEEEChHHhhhHHHHHHHHcCCCE
Confidence 3348999999999999999995 799999 89999997 78877654 357899999999999999999999832111
Q ss_pred ch--hhhHHHHHHhcCCc--HHHHHHHHHHHHHHhhCCCCEEEEcCCccccCCCCC---CCCCCeEecCccc
Q 046601 168 EH--TLIPAVDALNRKDV--EGATNLLRRALQVLLARAVNIVILASNDILDLLPPD---DPLFNKCIDPMDA 232 (233)
Q Consensus 168 ~~--~v~~~I~~vk~G~~--~~~~~~l~~~~~~l~~~gaD~vILGCTElPll~~~~---~~~~v~iIDp~~~ 232 (233)
-. -....++.++.|.. +..++.+.++++++.++ +|+|||||||||++.+.. .+ ++++|||+++
T Consensus 134 v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~p~l~~~i~~~~~-~vpviDs~~~ 203 (254)
T 1b73_A 134 VFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEA 203 (254)
T ss_dssp EEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCTTCCHHHHHHHSC-SCEEECHHHH
T ss_pred EEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccChHHHHHHHHHHcC-CCeEECCHHH
Confidence 00 01122334677753 45778899999999877 999999999999987652 23 7899999764
No 17
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=99.87 E-value=1.9e-22 Score=176.81 Aligned_cols=149 Identities=13% Similarity=0.015 Sum_probs=105.6
Q ss_pred cchhhhhhHHHHHHHHHH---HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHH
Q 046601 79 RSDLLKLEHALIAENLWS---FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGI 151 (233)
Q Consensus 79 ~~~~~~~~~~~I~~~l~~---~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gT 151 (233)
+++++..+.......+.+ .|++.|+|++||||||+|.+ +++| +++||+|| ++++.+... ++||||+||.+|
T Consensus 43 ~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~iviaCnt~~~l-~~lr~~~~iPvigi~e~~~~~a~~~-~~rigVlaT~~t 120 (245)
T 3qvl_A 43 PSIEGHFDEAIAAVGVLEQIRAGREQGVDGHVIASFGDPGL-LAARELAQGPVIGIAEAAMHMATMV-ATRFSIVTTLPR 120 (245)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCCTTH-HHHHHHCSSCEEEHHHHHHHHHHHH-CSCEEEEESCGG
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHH-HHHHHHcCCCEECccHHHHHHHHHc-CCEEEEEEcchh
Confidence 466777777777766666 77899999999999999987 8998 89999998 666666555 589999999999
Q ss_pred HhhhhHHHHHccccCcchh-hhHHH----HHHhcCCcHHHHHHHHHHHHHH-hhCCCCEEEEcCCccccCCCC-CCCCCC
Q 046601 152 LTAGVLKLCYQIKATMEHT-LIPAV----DALNRKDVEGATNLLRRALQVL-LARAVNIVILASNDILDLLPP-DDPLFN 224 (233)
Q Consensus 152 i~sglY~~~l~~~~~q~~~-v~~~I----~~vk~G~~~~~~~~l~~~~~~l-~~~gaD~vILGCTElPll~~~-~~~~~v 224 (233)
+. +.|++.++......++ -..+. ..+.. ..+...+.+.+...++ .++|+|+|||||||||++.+. ....++
T Consensus 121 ~~-~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~~~gV 198 (245)
T 3qvl_A 121 TL-IIARHLLHQYGFHQHCAALHAIDLPVLALED-GSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTRELRV 198 (245)
T ss_dssp GH-HHHHHHHHHHTCGGGEEEEEECCSCGGGGGS-SSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHHHHTS
T ss_pred HH-HHHHHHHHHcCCCCeEEEEeCCCCCHHHHcC-CcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHcCC
Confidence 86 8999998832211110 00000 01222 2234556666655554 458999999999999998765 222368
Q ss_pred eEecCcc
Q 046601 225 KCIDPMD 231 (233)
Q Consensus 225 ~iIDp~~ 231 (233)
++|||..
T Consensus 199 pvID~~~ 205 (245)
T 3qvl_A 199 PVIDGVS 205 (245)
T ss_dssp CEECHHH
T ss_pred eEEccHH
Confidence 9999875
No 18
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=99.86 E-value=1.4e-22 Score=173.43 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=98.9
Q ss_pred HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHH-ccc--c-Ccc
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCY-QIK--A-TME 168 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l-~~~--~-~q~ 168 (233)
+|+++|+|+||++|||+ +++++++ +++||+|| ++++.+... ++||||+||.+|+.+ .|++.+ +.. + ...
T Consensus 70 ~l~~~g~d~iviaCnta-~~~~~l~~~~~iPvi~i~~~~~~~a~~~-~~rigVlat~~t~~~-~~~~~~~~~~g~~~~~~ 146 (228)
T 2eq5_A 70 EFEREGVDAIIISCAAD-PAVEKVRKLLSIPVIGAGSSVSALALAY-GRRVGVLNLTEETPK-VIRSILGNNLIAEDHPS 146 (228)
T ss_dssp HHHHTTCSEEEECSTTC-TTHHHHHHHCSSCEEEHHHHHHHHHHTT-CSSEEEECSSSCCCH-HHHHHHGGGEEEEECCT
T ss_pred HHHHCCCCEEEEeCCch-HHHHHHHHhCCCCEeCccHHHHHHHHHh-CCeEEEEecCcccHH-HHHHHHHHHhCccccCC
Confidence 88999999999999999 8899998 89999997 677776654 489999999999995 799999 621 1 111
Q ss_pred hhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEcCCccc--cCCCC-CCCCCCeEecCccc
Q 046601 169 HTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILASNDIL--DLLPP-DDPLFNKCIDPMDA 232 (233)
Q Consensus 169 ~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILGCTElP--ll~~~-~~~~~v~iIDp~~~ 232 (233)
. +.+ +..+. .+...+.+.++++++.++|+|+||||||||| ++.+. ....++++|||..+
T Consensus 147 ~-~~~-v~~~~---~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~t~~~~~~i~~~~~vpvids~~~ 208 (228)
T 2eq5_A 147 G-VSN-TLDLL---TDWGRREVINAAKRLKEKGVEVIALGCTGMSTIGIAPVLEEEVGIPVIDPVIA 208 (228)
T ss_dssp T-CCS-GGGGG---SHHHHHHHHHHHHHHHHTTCSEEEECCTHHHHHTCHHHHHHHHSSCEECHHHH
T ss_pred c-eee-HHHhc---ChHHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHcCCCEEchHHH
Confidence 1 222 22222 1446788999999998889999999999999 87765 22237899999754
No 19
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=99.75 E-value=6.6e-19 Score=153.71 Aligned_cols=133 Identities=15% Similarity=0.073 Sum_probs=96.1
Q ss_pred HHHHcCCcEEeeccchhhhh---------HHhhc--CCCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHcc
Q 046601 97 FLEKLGACYSVIPCHIYRIW---------HDEVS--CFVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQI 163 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~---------~del~--~~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~ 163 (233)
.|+.+|+|+|+++|||+|+| .++++ .++|++++ ++++.++..+.+||||++|-.+..++.|++.+++
T Consensus 61 ~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~~~A~~~al~~~g~~rvglltpy~~~~~~~~~~~l~~ 140 (240)
T 3ixl_A 61 RLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERLAAFLAE 140 (240)
T ss_dssp HHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEHHHHHHHHHHHTTCSEEEEEESSCHHHHHHHHHHHHH
T ss_pred HhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECHHHHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHH
Confidence 89999999999999999985 47887 89999999 6777777778899999999777779999999882
Q ss_pred ccCcchhhhHH--H-HHHhcCCcHHHHHHHHHHHHH-H-hhCCCCEEEEcCCccccCC--CC-CCCCCCeEecCccc
Q 046601 164 KATMEHTLIPA--V-DALNRKDVEGATNLLRRALQV-L-LARAVNIVILASNDILDLL--PP-DDPLFNKCIDPMDA 232 (233)
Q Consensus 164 ~~~q~~~v~~~--I-~~vk~G~~~~~~~~l~~~~~~-l-~~~gaD~vILGCTElPll~--~~-~~~~~v~iIDp~~~ 232 (233)
... +-+.... + ...+.|..+ .+.+.+++++ + ...|+|+|||||||||.+. +. ....+++++|++.+
T Consensus 141 ~Gi-ev~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~adaivL~CT~l~~l~~i~~le~~lg~PVids~~a 214 (240)
T 3ixl_A 141 ESL-VPTGCRSLGITGVEAMARVD--TATLVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVPVVSSSPA 214 (240)
T ss_dssp TTC-EEEEEEECCCCCHHHHHTCC--HHHHHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSSCEEEHHHH
T ss_pred CCC-EEeccccCCCCCcchhhcCC--HHHHHHHHHHHhhcCCCCCEEEEeCCCCchhhhHHHHHHHhCCCEEeHHHH
Confidence 111 0000000 0 112223221 3467777777 7 6779999999999999875 32 12336789998764
No 20
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=99.73 E-value=8.4e-19 Score=155.58 Aligned_cols=133 Identities=8% Similarity=-0.022 Sum_probs=95.3
Q ss_pred HHHHcCCcEEeeccchhhhhH---------Hhhc--C-----CCCeech--hchHhHHhhCCCeEEEEcCHHHHhhhhHH
Q 046601 97 FLEKLGACYSVIPCHIYRIWH---------DEVS--C-----FVPFLHV--TKSKPLEVRSPLGIHVLMTNGILTAGVLK 158 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~---------del~--~-----~vPii~i--~tv~~~~~~~~~rVGVLAT~gTi~sglY~ 158 (233)
.|+++|+|+|+++|||+|+++ ++++ + ++|++++ ++++.++..+.+||||++|-.+..++.|+
T Consensus 85 ~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~~~A~~~al~~~g~~rvgvltp~~~~~~~~~~ 164 (273)
T 2xed_A 85 EIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRPLAEKVV 164 (273)
T ss_dssp HHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHH
T ss_pred HHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecHHHHHHHHHHHcCCCeEEEEcCChhhhHHHHH
Confidence 899999999999999999985 8887 7 9999999 66666666667899999877777788999
Q ss_pred HHHccccCcchhhhH--HHH-HHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEc-CCccccCC--CC-CCCCCCeEecCcc
Q 046601 159 LCYQIKATMEHTLIP--AVD-ALNRKDVEGATNLLRRALQVLLARAVNIVILA-SNDILDLL--PP-DDPLFNKCIDPMD 231 (233)
Q Consensus 159 ~~l~~~~~q~~~v~~--~I~-~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILG-CTElPll~--~~-~~~~~v~iIDp~~ 231 (233)
+.++....... ... .++ .++.|..+ .+.+.++++.+.+.|+|+|||| |||||.+. +. ....++++||++.
T Consensus 165 ~~l~~~Gi~v~-~~~~~~~~~~~~~g~~~--~~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~le~~lg~PVids~~ 241 (273)
T 2xed_A 165 AYLEAEGFTIS-DWRALEVADNTEVGCIP--GEQVMAAARSLDLSEVDALVISCAVQMPSLPLVETAEREFGIPVLSAAT 241 (273)
T ss_dssp HHHHHTTCEEE-EEEECCCCBHHHHHTCC--HHHHHHHHHHSCCTTCSEEEEESSSSSCCTTHHHHHHHHHSSCEEEHHH
T ss_pred HHHHHCCCEEe-ccccCCCccchhhcccC--HHHHHHHHHHHhhCCCCEEEEcCCCCcchHHhHHHHHHHhCCCEEcHHH
Confidence 99982211100 000 011 23333322 2457777788877899999999 99999862 32 1223678999875
Q ss_pred c
Q 046601 232 A 232 (233)
Q Consensus 232 ~ 232 (233)
+
T Consensus 242 a 242 (273)
T 2xed_A 242 A 242 (273)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=99.70 E-value=4.8e-18 Score=145.25 Aligned_cols=131 Identities=10% Similarity=-0.013 Sum_probs=90.6
Q ss_pred HHHHHHcCCcEEeeccchhhhhH----Hhhc--CCCCeech-hchHhHHhhCCCeEEEEcCHHHHhhhhHHHHHccccCc
Q 046601 95 WSFLEKLGACYSVIPCHIYRIWH----DEVS--CFVPFLHV-TKSKPLEVRSPLGIHVLMTNGILTAGVLKLCYQIKATM 167 (233)
Q Consensus 95 ~~~Le~~Gad~IVIaCNTAH~~~----del~--~~vPii~i-~tv~~~~~~~~~rVGVLAT~gTi~sglY~~~l~~~~~q 167 (233)
.+.|+++ +|+|+++|||+|+++ ++++ .++| + ++++.++..+.+||||++|..+..++.|++.++.....
T Consensus 60 a~~L~~~-~d~ivi~Cnt~~~~~g~~~~~l~~~~~iP---~~a~~~a~~~~g~~rvgvlt~~~~~~~~~~~~~l~~~G~~ 135 (223)
T 2dgd_A 60 YSLLAEV-SDIIIYGRTYGTHKHAHVIKRVIKDVVIP---EESVYELLKKLNVRKLWIGTPYIKERTLEEVEWWRNKGFE 135 (223)
T ss_dssp HHHHTTT-CSEEEECCCTTTTTCHHHHHHHSTTCBCH---HHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHHHTTTCE
T ss_pred HHHhhcc-CCEEEEcCCHHHHhhhHHHHHHHHhcCCC---HHHHHHHHHHcCCCeEEEEeCCchHHHHHHHHHHHhCCcE
Confidence 3489999 999999999999986 8998 7899 6 67676766667899999877777799999999822100
Q ss_pred chhhhH--HH-HHHhcCCcHHHHHHHHHHHHHHhhC--CCCEEEEcCCccccC--CCC-CCCCCCeEecCccc
Q 046601 168 EHTLIP--AV-DALNRKDVEGATNLLRRALQVLLAR--AVNIVILASNDILDL--LPP-DDPLFNKCIDPMDA 232 (233)
Q Consensus 168 ~~~v~~--~I-~~vk~G~~~~~~~~l~~~~~~l~~~--gaD~vILGCTElPll--~~~-~~~~~v~iIDp~~~ 232 (233)
.. ... .+ ..++.|... .+.+.++++.+.+. |+|+|||||||||++ .+. ....++++||+..+
T Consensus 136 v~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVids~~~ 205 (223)
T 2dgd_A 136 IV-GYDGLGKIRGIDISNTP--IFTIYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVVSENAA 205 (223)
T ss_dssp EE-EEEECCCCSHHHHHTCC--HHHHHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEEEHHHH
T ss_pred Ee-cccCCCCCCcchhhccC--HHHHHHHHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEEEhHHH
Confidence 00 000 01 123333322 13456666666666 999999999999986 232 12236789998754
No 22
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=93.42 E-value=0.19 Score=42.63 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=50.9
Q ss_pred CeEEEEcCHHHHhh-hhHHHHHc---cccCcch---hh-----hHHH-HHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEE
Q 046601 141 LGIHVLMTNGILTA-GVLKLCYQ---IKATMEH---TL-----IPAV-DALNRKDVEGATNLLRRALQVLLARAVNIVIL 207 (233)
Q Consensus 141 ~rVGVLAT~gTi~s-glY~~~l~---~~~~q~~---~v-----~~~I-~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vIL 207 (233)
|+|||||--|...+ .+|++..+ ...+|+. ++ .+-+ +....|+.++....+.+.++.|.+.|+|.+|+
T Consensus 3 k~iGilGGmg~~at~~~~~~i~~~~~~~~~~~h~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~ivi 82 (231)
T 3ojc_A 3 KILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIVV 82 (231)
T ss_dssp CCEEEEECTTHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEECCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEEccCCHHHHHHHHHHHHHHhHHhcCCCCCccceeeCCChhhHHHHHHCCChhHHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999987777776 45665555 1112222 11 1112 23666776778888999999999999999999
Q ss_pred cCCccccCCCC
Q 046601 208 ASNDILDLLPP 218 (233)
Q Consensus 208 GCTElPll~~~ 218 (233)
+|.=...+.+.
T Consensus 83 aCNTa~~~~~~ 93 (231)
T 3ojc_A 83 CTNTMHKVADD 93 (231)
T ss_dssp CSSGGGGGHHH
T ss_pred eCCchHHHHHH
Confidence 99754334443
No 23
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=88.20 E-value=0.089 Score=44.13 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=50.9
Q ss_pred CeEEEEcCHHHHhhhhHHHHHc----cccCcch---hhhH--HHHHH---hcCCcHHHHHHHHHHHHHHhhCCCCEEEEc
Q 046601 141 LGIHVLMTNGILTAGVLKLCYQ----IKATMEH---TLIP--AVDAL---NRKDVEGATNLLRRALQVLLARAVNIVILA 208 (233)
Q Consensus 141 ~rVGVLAT~gTi~sglY~~~l~----~~~~q~~---~v~~--~I~~v---k~G~~~~~~~~l~~~~~~l~~~gaD~vILG 208 (233)
++|||||--|...+-.|-+.+. ....|.. +++. -+.+. ..+ .+.....+.+.++.+.+.|+|+++++
T Consensus 2 ~~iGiiGGmgp~at~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~L~~~g~d~ivia 80 (226)
T 2zsk_A 2 KKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEG-WEGRKKILINAAKALERAGAELIAFA 80 (226)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCTHHHHTCTTH-HHHHHHHHHHHHHHHHHHTCSEEEES
T ss_pred CeEEEecccCHHHHHHHHHHHHHHHHHhcCCccCCeeEEeCCCHHHHHhhcCC-cchHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3689987555555555544444 1222221 1111 11222 222 45667788888899998999999999
Q ss_pred CCccccCCCC-CCCCCCeEecC
Q 046601 209 SNDILDLLPP-DDPLFNKCIDP 229 (233)
Q Consensus 209 CTElPll~~~-~~~~~v~iIDp 229 (233)
|+=.+.+.+. ....++|++..
T Consensus 81 CnTa~~~~~~l~~~~~iPvi~i 102 (226)
T 2zsk_A 81 ANTPHLVFDDVQREVNVPMVSI 102 (226)
T ss_dssp SSGGGGGHHHHHHHCSSCBCCH
T ss_pred CCcHHHHHHHHHHhCCCCEecc
Confidence 9977755544 12235566653
No 24
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=86.45 E-value=1.2 Score=37.95 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=54.5
Q ss_pred HHHHcCCcEEeeccchhhhhHHhhcCCCCeech-h----chHhHHh-h-CCCeEEEEcCHHHHhh-hhHHHHHccccCcc
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV-T----KSKPLEV-R-SPLGIHVLMTNGILTA-GVLKLCYQIKATME 168 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i-~----tv~~~~~-~-~~~rVGVLAT~gTi~s-glY~~~l~~~~~q~ 168 (233)
.++..|+|+|+=.=-||...-+. +++||+.| . .++.++. + ..+|||+++-+.++.. ..+.+.+.-+-.+.
T Consensus 58 ~~~~~~~dVIISRGgta~~Lr~~--~~iPVV~I~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~i~~~ 135 (225)
T 2pju_A 58 KLANERCDAIIAAGSNGAYLKSR--LSVPVILIKPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQR 135 (225)
T ss_dssp HTTTSCCSEEEEEHHHHHHHHTT--CSSCEEEECCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred HHhcCCCeEEEeCChHHHHHHhh--CCCCEEEecCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCceEEE
Confidence 45556799887777777655433 68999998 2 2233322 1 2579999987665432 23344333111111
Q ss_pred hhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEc
Q 046601 169 HTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208 (233)
Q Consensus 169 ~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILG 208 (233)
. - ...+.++..++.+.++|+++||=|
T Consensus 136 ~-----------~---~~~ee~~~~i~~l~~~G~~vVVG~ 161 (225)
T 2pju_A 136 S-----------Y---ITEEDARGQINELKANGTEAVVGA 161 (225)
T ss_dssp E-----------E---SSHHHHHHHHHHHHHTTCCEEEES
T ss_pred E-----------e---CCHHHHHHHHHHHHHCCCCEEECC
Confidence 0 0 012345567778888999876643
No 25
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=84.85 E-value=4.1 Score=33.45 Aligned_cols=94 Identities=5% Similarity=-0.023 Sum_probs=54.5
Q ss_pred HHHHcCCcEEeeccchhhhhHHhhcCCCCeech--------hchHhHHhhCCCeEEEEcCHHHHhh-hhHHHHHccccCc
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV--------TKSKPLEVRSPLGIHVLMTNGILTA-GVLKLCYQIKATM 167 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i--------~tv~~~~~~~~~rVGVLAT~gTi~s-glY~~~l~~~~~q 167 (233)
.+ ..|+|+|+=.=-||...-+. +++|++.| .+++.++.. .+|||+++-+.++.. ..+.+.+.-+-.+
T Consensus 47 ~~-~~~~dVIISRGgta~~lr~~--~~iPVV~I~~s~~Dil~al~~a~~~-~~kIavvg~~~~~~~~~~~~~ll~~~i~~ 122 (196)
T 2q5c_A 47 GL-QDEVDAIISRGATSDYIKKS--VSIPSISIKVTRFDTMRAVYNAKRF-GNELALIAYKHSIVDKHEIEAMLGVKIKE 122 (196)
T ss_dssp HH-TTTCSEEEEEHHHHHHHHTT--CSSCEEEECCCHHHHHHHHHHHGGG-CSEEEEEEESSCSSCHHHHHHHHTCEEEE
T ss_pred Hh-cCCCeEEEECChHHHHHHHh--CCCCEEEEcCCHhHHHHHHHHHHhh-CCcEEEEeCcchhhHHHHHHHHhCCceEE
Confidence 45 78999887777777655433 67999998 233334433 579999987665543 2344444311111
Q ss_pred chhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEEc
Q 046601 168 EHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVILA 208 (233)
Q Consensus 168 ~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vILG 208 (233)
.. + ... +.+++.++.+.++|+++||=|
T Consensus 123 ~~--------~--~~~----~e~~~~i~~l~~~G~~vvVG~ 149 (196)
T 2q5c_A 123 FL--------F--SSE----DEITTLISKVKTENIKIVVSG 149 (196)
T ss_dssp EE--------E--CSG----GGHHHHHHHHHHTTCCEEEEC
T ss_pred EE--------e--CCH----HHHHHHHHHHHHCCCeEEECC
Confidence 11 0 111 223456777888999876543
No 26
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=83.45 E-value=1.2 Score=39.34 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=28.7
Q ss_pred HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV 129 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i 129 (233)
.++++||++|++.|-++. ...++. +++|+++|
T Consensus 181 a~~eAGA~~ivlE~vp~~-~a~~It~~l~iP~igI 214 (275)
T 3vav_A 181 AVEEAGAQLIVLEAVPTL-VAAEVTRELSIPTIGI 214 (275)
T ss_dssp HHHHHTCSEEEEESCCHH-HHHHHHHHCSSCEEEE
T ss_pred HHHHcCCCEEEecCCCHH-HHHHHHHhCCCCEEEE
Confidence 889999999999999886 667776 89999999
No 27
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=82.41 E-value=1 Score=37.44 Aligned_cols=87 Identities=16% Similarity=0.119 Sum_probs=47.7
Q ss_pred CeEEEEcCHHHHhh-hhHHHHHc---cccCcchh---------hhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEEE
Q 046601 141 LGIHVLMTNGILTA-GVLKLCYQ---IKATMEHT---------LIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVIL 207 (233)
Q Consensus 141 ~rVGVLAT~gTi~s-glY~~~l~---~~~~q~~~---------v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vIL 207 (233)
++|||+|=-|...+ .+|++..+ ...+|... +.+-...+..+ .+.....+.+.++.+.+.|+|.+++
T Consensus 2 ~~iGiiGGmg~~at~~~~~~i~~~~~~~~d~~~~~~~~~~~~~i~~r~~~~~~~-~~~~~~~l~~~~~~l~~~g~d~ivi 80 (228)
T 1jfl_A 2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGK-GEDPRPQLIWTAKRLEECGADFIIM 80 (228)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHHTTS-SCCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred CeEEEecccCHHHHHHHHHHHHHHHHhhcCCccCcEeEEeCCCHHHHHHHHHcC-CchHHHHHHHHHHHHHHcCCCEEEE
Confidence 47999875555543 46666654 11112110 10111112222 3345567778888898889999999
Q ss_pred cCCccccCCCC-CCCCCCeEec
Q 046601 208 ASNDILDLLPP-DDPLFNKCID 228 (233)
Q Consensus 208 GCTElPll~~~-~~~~~v~iID 228 (233)
+|+=...+.+. ....++|++.
T Consensus 81 aCnTa~~~~~~l~~~~~iPvi~ 102 (228)
T 1jfl_A 81 PCNTAHAFVEDIRKAIKIPIIS 102 (228)
T ss_dssp SCTGGGGGHHHHHHHCSSCBCC
T ss_pred cCccHHHHHHHHHHhCCCCEec
Confidence 99955444443 1223455554
No 28
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=80.88 E-value=1.2 Score=39.91 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=74.9
Q ss_pred Ccchhhhhh-HHHHHHHHHH-HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech---h-chHhHHhhCCCeEEEEc--
Q 046601 78 GRSDLLKLE-HALIAENLWS-FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV---T-KSKPLEVRSPLGIHVLM-- 147 (233)
Q Consensus 78 ~~~~~~~~~-~~~I~~~l~~-~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i---~-tv~~~~~~~~~rVGVLA-- 147 (233)
.|.+...++ ++.|...+.. .|+.+|+|-++.= -.|. ++++ +++|+-|+ + -+++++....+..-|+|
T Consensus 99 aRQDr~~~~~r~pisak~vA~ll~~~G~d~vit~--DlH~--~qiqgfF~ipvd~l~a~p~l~~~i~~~~~~~~vVVspd 174 (319)
T 3dah_A 99 ARQDRRPRSARVAISAKVVANMLEIAGVERIITM--DLHA--DQIQGFFDIPVDNIYATPILLGDLRKQNYPDLLVVSPD 174 (319)
T ss_dssp TTCCSCCTTCCCCCHHHHHHHHHHHHTCCEEEEE--SCSC--GGGGGGCSSCEEEECCHHHHHHHHHTTCCTTEEEECCS
T ss_pred cccccccCCCCCCccHHHHHHHHHhcCCCEEEEE--ECCC--hHHhhhcCCceEecccHHHHHHHHHHhCCCCcEEEEeC
Confidence 455555555 6666666666 8889999988643 2344 6777 78999888 2 33455544344555554
Q ss_pred CHHHHhhhhHHHHHc------c----ccCcchhhhHHHHHHhcCC---cH---HHHHHHHHHHHHHhhCCCCEEEEcCCc
Q 046601 148 TNGILTAGVLKLCYQ------I----KATMEHTLIPAVDALNRKD---VE---GATNLLRRALQVLLARAVNIVILASND 211 (233)
Q Consensus 148 T~gTi~sglY~~~l~------~----~~~q~~~v~~~I~~vk~G~---~~---~~~~~l~~~~~~l~~~gaD~vILGCTE 211 (233)
+-|......+.+.+. + .....+ .+....+++... .+ ..-..+.++.+.|.++|+..+...|||
T Consensus 175 ~Ggv~~A~~lA~~L~~p~~~i~K~r~~~~~v~-~~~i~g~v~gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH 253 (319)
T 3dah_A 175 VGGVVRARALAKQLNCDLAIIDKRRPKANVAE-VMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATH 253 (319)
T ss_dssp STTHHHHHHHHHHTTCEEEC---------------------CCSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEE
T ss_pred CCccHHHHHHHHHhCCCEEEEEEEeccCCceE-EEEccccCCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 335666666666665 1 111111 233333344221 11 123567788888999999999999999
Q ss_pred c
Q 046601 212 I 212 (233)
Q Consensus 212 l 212 (233)
=
T Consensus 254 ~ 254 (319)
T 3dah_A 254 P 254 (319)
T ss_dssp E
T ss_pred e
Confidence 3
No 29
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=80.80 E-value=2.9 Score=35.69 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCcEEeeccchhhhhHHhhc--CCCCeech--hchHhHHh
Q 046601 88 ALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV--TKSKPLEV 137 (233)
Q Consensus 88 ~~I~~~l~~~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i--~tv~~~~~ 137 (233)
+.+.+...+.+++.|+|.||+.|--...+.+.++ .++|+|+- ++++.++.
T Consensus 160 ~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~~~gVpvID~~~a~~~~~~~ 213 (245)
T 3qvl_A 160 EKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTRELRVPVIDGVSAAVKMVES 213 (245)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHHHHTSCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHcCCeEEccHHHHHHHHHH
Confidence 3333444445667899999999985555568888 78999996 55555443
No 30
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=76.87 E-value=4.6 Score=35.07 Aligned_cols=38 Identities=13% Similarity=-0.079 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCcEEeeccchhhhh--HHhhc-CCCCeec
Q 046601 91 AENLWSFLEKLGACYSVIPCHIYRIW--HDEVS-CFVPFLH 128 (233)
Q Consensus 91 ~~~l~~~Le~~Gad~IVIaCNTAH~~--~del~-~~vPii~ 128 (233)
.....+.+++.|+++|+-|..+.... .+.+. .++|+|.
T Consensus 62 ~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~ 102 (387)
T 3i45_A 62 VTAAQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMA 102 (387)
T ss_dssp HHHHHHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHhcCCEEEECCcchHHHHHHHHHHHHcCceEEe
Confidence 33333344556999998887665443 34344 5667665
No 31
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=76.65 E-value=4.2 Score=34.62 Aligned_cols=53 Identities=8% Similarity=-0.087 Sum_probs=31.7
Q ss_pred HHHHcCCcEEeeccchhhhh--HHhhc-CCCCeech---------------------------hchHhHHhh-CCCeEEE
Q 046601 97 FLEKLGACYSVIPCHIYRIW--HDEVS-CFVPFLHV---------------------------TKSKPLEVR-SPLGIHV 145 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~--~del~-~~vPii~i---------------------------~tv~~~~~~-~~~rVGV 145 (233)
.|.+.|+++|+-|..+.... .+.++ .++|+|.. ..++.+.+. +.+||++
T Consensus 64 ~l~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iai 143 (356)
T 3ipc_A 64 KFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAI 143 (356)
T ss_dssp HHHHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 44448899988776655442 34444 56776642 112334444 6889999
Q ss_pred EcCH
Q 046601 146 LMTN 149 (233)
Q Consensus 146 LAT~ 149 (233)
++.+
T Consensus 144 i~~~ 147 (356)
T 3ipc_A 144 IHDK 147 (356)
T ss_dssp EECS
T ss_pred EeCC
Confidence 9763
No 32
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=75.74 E-value=1.8 Score=36.96 Aligned_cols=57 Identities=7% Similarity=-0.149 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCcEEeeccchhhh--hHHhhc-CCCCeech--------------------------hchHhHHhhCCCe
Q 046601 92 ENLWSFLEKLGACYSVIPCHIYRI--WHDEVS-CFVPFLHV--------------------------TKSKPLEVRSPLG 142 (233)
Q Consensus 92 ~~l~~~Le~~Gad~IVIaCNTAH~--~~del~-~~vPii~i--------------------------~tv~~~~~~~~~r 142 (233)
+.+.+.+++.+++.|+.+..+... ..+.++ .++|+|.. ..++.+...+.+|
T Consensus 62 ~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 141 (358)
T 3hut_A 62 TIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFTS 141 (358)
T ss_dssp HHHHHHHHCTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCCE
T ss_pred HHHHHHhccCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCCE
Confidence 333334447889988887655433 234444 56666542 1223444457899
Q ss_pred EEEEcC
Q 046601 143 IHVLMT 148 (233)
Q Consensus 143 VGVLAT 148 (233)
|++++.
T Consensus 142 ia~i~~ 147 (358)
T 3hut_A 142 VAVIGV 147 (358)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999964
No 33
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=75.57 E-value=4.6 Score=33.19 Aligned_cols=39 Identities=10% Similarity=0.058 Sum_probs=30.2
Q ss_pred HHHHcCCcEEeeccchhh--hhHHhhc--CCCCeech--hchHhH
Q 046601 97 FLEKLGACYSVIPCHIYR--IWHDEVS--CFVPFLHV--TKSKPL 135 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH--~~~del~--~~vPii~i--~tv~~~ 135 (233)
.|.+.|+|.||+.|--.. .+.++++ .++|+++- .+++.+
T Consensus 169 ~l~~~~~d~IvLgCT~~~t~~~~~~i~~~~~vpvids~~~~a~~~ 213 (228)
T 2eq5_A 169 RLKEKGVEVIALGCTGMSTIGIAPVLEEEVGIPVIDPVIASGAVA 213 (228)
T ss_dssp HHHHTTCSEEEECCTHHHHHTCHHHHHHHHSSCEECHHHHHHHHH
T ss_pred HHHHcCCCEEEECCCCcchHHHHHHHHHHcCCCEEchHHHHHHHH
Confidence 455569999999999888 6678887 79999997 444443
No 34
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=75.25 E-value=3.1 Score=36.43 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=27.2
Q ss_pred HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV 129 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i 129 (233)
.++++||++|++.|-++ ....++. +++|+++|
T Consensus 169 a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igI 202 (264)
T 1m3u_A 169 ALEAAGAQLLVLECVPV-ELAKRITEALAIPVIGI 202 (264)
T ss_dssp HHHHHTCCEEEEESCCH-HHHHHHHHHCSSCEEEE
T ss_pred HHHHCCCcEEEEecCCH-HHHHHHHHhCCCCEEEe
Confidence 88999999999999765 4456666 89999999
No 35
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=74.92 E-value=2.8 Score=36.31 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=50.4
Q ss_pred CCeEEEEcCHHHHhh-hhHHHHHc---cccCcchh---------hhHHHHH-HhcCCcHHHHHHHHHHHHHHhhCCCCEE
Q 046601 140 PLGIHVLMTNGILTA-GVLKLCYQ---IKATMEHT---------LIPAVDA-LNRKDVEGATNLLRRALQVLLARAVNIV 205 (233)
Q Consensus 140 ~~rVGVLAT~gTi~s-glY~~~l~---~~~~q~~~---------v~~~I~~-vk~G~~~~~~~~l~~~~~~l~~~gaD~v 205 (233)
.++|||||=-|...+ .+|++..+ ...++... +-+-... ...|+ .....+.+.++.|.++|+|.+
T Consensus 26 ~k~IGiiGGmg~~aT~~~~~~i~~~~~~~~D~~h~p~~~~s~~~i~~r~~~~~~~g~--~~~~~l~~~~~~L~~~Gad~I 103 (268)
T 3s81_A 26 KHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGP--SPYRYLERYLHMLEDAGAECI 103 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHSCCSSGGGSCCEEEEECTTSCCHHHHHHHCCC--CSHHHHHHHHHHHHHTTCSEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhhHhhcCCCCCCEEEeccCCHHHHHHHHHhCCc--hHHHHHHHHHHHHHHcCCCEE
Confidence 578999986666655 45666655 11111110 1111112 23342 345678888899999999999
Q ss_pred EEcCCccccCCCC-CCCCCCeEec
Q 046601 206 ILASNDILDLLPP-DDPLFNKCID 228 (233)
Q Consensus 206 ILGCTElPll~~~-~~~~~v~iID 228 (233)
|++|-=...+++. ....++|+|.
T Consensus 104 VIaCNTah~~l~~lr~~~~iPvig 127 (268)
T 3s81_A 104 VIPCNTAHYWFDDLQNVAKARMIS 127 (268)
T ss_dssp ECSCSGGGGGHHHHHHHCSSEEEC
T ss_pred EEeCCCHHHHHHHHHHHCCCCEEc
Confidence 9999644434444 2223567765
No 36
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=74.38 E-value=3 Score=35.31 Aligned_cols=66 Identities=8% Similarity=-0.059 Sum_probs=35.4
Q ss_pred HHHHcCCcEEeeccchhhh--hHHhhc-CCCCeech-------------------------hchHhHHhhCCCeEEEEcC
Q 046601 97 FLEKLGACYSVIPCHIYRI--WHDEVS-CFVPFLHV-------------------------TKSKPLEVRSPLGIHVLMT 148 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~--~~del~-~~vPii~i-------------------------~tv~~~~~~~~~rVGVLAT 148 (233)
.+++.+++.|+.+..+... ..+.++ .++|+|.. ..++.+...+.+||+++..
T Consensus 64 l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~ 143 (362)
T 3snr_A 64 FVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGY 143 (362)
T ss_dssp HHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCCCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHhccCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCCccccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3344488888877655433 233333 45554432 2234455557899999965
Q ss_pred HHHH---hhhhHHHHHc
Q 046601 149 NGIL---TAGVLKLCYQ 162 (233)
Q Consensus 149 ~gTi---~sglY~~~l~ 162 (233)
.... ...-|++.++
T Consensus 144 ~~~~~~~~~~~~~~~l~ 160 (362)
T 3snr_A 144 SDSYGDLWFNDLKKQGE 160 (362)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHH
Confidence 3322 2233555554
No 37
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=74.34 E-value=3.9 Score=35.14 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCCcEEeeccchhhh--hHH--hhc-CCCCeech-------------------------hchHhHHhhC
Q 046601 90 IAENLWSFLEKLGACYSVIPCHIYRI--WHD--EVS-CFVPFLHV-------------------------TKSKPLEVRS 139 (233)
Q Consensus 90 I~~~l~~~Le~~Gad~IVIaCNTAH~--~~d--el~-~~vPii~i-------------------------~tv~~~~~~~ 139 (233)
..+.+.+.+++.++++|+.|..+... ..+ .++ .++|+|.. ..++.+...+
T Consensus 61 ~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g 140 (364)
T 3lop_A 61 TVRNVRDMARVDNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTTDPLVFPIKASYQQEIDKMITALVTIG 140 (364)
T ss_dssp HHHHHHHHHHHSCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTTEECCSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhccCCcEEEeCCChHHHHHHHHHHHHHcC
Confidence 33333334455688888877655443 234 444 55665543 1223344456
Q ss_pred CCeEEEEcCHH
Q 046601 140 PLGIHVLMTNG 150 (233)
Q Consensus 140 ~~rVGVLAT~g 150 (233)
.+||++++.+.
T Consensus 141 ~~~iaii~~~~ 151 (364)
T 3lop_A 141 VTRIGVLYQED 151 (364)
T ss_dssp CCCEEEEEETT
T ss_pred CceEEEEEeCc
Confidence 78999997643
No 38
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=72.19 E-value=5.2 Score=34.20 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHcCCcEEeeccchhhh--hHHhhc-CCCCeec
Q 046601 86 EHALIAENLWSFLEKLGACYSVIPCHIYRI--WHDEVS-CFVPFLH 128 (233)
Q Consensus 86 ~~~~I~~~l~~~Le~~Gad~IVIaCNTAH~--~~del~-~~vPii~ 128 (233)
+++...+.+.+.+++.++++|+.|..+... ..+.++ .++|+|.
T Consensus 73 ~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~ 118 (386)
T 3sg0_A 73 DPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMT 118 (386)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEECCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHhhcCceEEECCCCchhHHHHHHHHHhcCCeEEE
Confidence 444444444445555589999887665443 234444 5666654
No 39
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=70.39 E-value=3.6 Score=36.24 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=27.3
Q ss_pred HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV 129 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i 129 (233)
.++++||++|++.|-++ ....++. +++|+++|
T Consensus 169 a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igI 202 (275)
T 1o66_A 169 AHDDAGAAVVLMECVLA-ELAKKVTETVSCPTIGI 202 (275)
T ss_dssp HHHHTTCSEEEEESCCH-HHHHHHHHHCSSCEEEE
T ss_pred HHHHcCCcEEEEecCCH-HHHHHHHHhCCCCEEEE
Confidence 88999999999999775 4456666 89999999
No 40
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=70.38 E-value=8.1 Score=33.57 Aligned_cols=16 Identities=6% Similarity=-0.074 Sum_probs=11.5
Q ss_pred HhHHhh-CCCeEEEEcC
Q 046601 133 KPLEVR-SPLGIHVLMT 148 (233)
Q Consensus 133 ~~~~~~-~~~rVGVLAT 148 (233)
+.+... +.+||+++..
T Consensus 133 ~~l~~~~g~~~iaii~~ 149 (391)
T 3eaf_A 133 AFLASEFGQGKLALAYD 149 (391)
T ss_dssp HHHHHHHCSEEEEEEEC
T ss_pred HHHHHhcCCCEEEEEEe
Confidence 344443 7889999987
No 41
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=69.95 E-value=6.2 Score=34.46 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=42.3
Q ss_pred CCCCcchhhhhh----H-HHHHHHHHH--HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech------hchHhHHhhC
Q 046601 75 SLNGRSDLLKLE----H-ALIAENLWS--FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV------TKSKPLEVRS 139 (233)
Q Consensus 75 ~~~~~~~~~~~~----~-~~I~~~l~~--~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i------~tv~~~~~~~ 139 (233)
-+++|.+..... + +.+-+.+.+ .++.+|||+|+++|-+.-..+.++. +++|+ ++ .+.+++.+.|
T Consensus 147 ~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~-n~~~~~~~~~~~eL~~lG 225 (275)
T 2ze3_A 147 FLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLALQSQDIRALADALRVPL-NVMAFPGSPVPRALLDAG 225 (275)
T ss_dssp EEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTCCCHHHHHHHHHHCSSCE-EEECCTTSCCHHHHHHTT
T ss_pred EEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhcCCCE-EEecCCCCCCHHHHHHcC
Confidence 378888764321 1 223333333 7788999999999964333445554 77886 44 3567777777
Q ss_pred CCeEE
Q 046601 140 PLGIH 144 (233)
Q Consensus 140 ~~rVG 144 (233)
.++|-
T Consensus 226 v~~v~ 230 (275)
T 2ze3_A 226 AARVS 230 (275)
T ss_dssp CSEEE
T ss_pred CcEEE
Confidence 66553
No 42
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=68.99 E-value=4.6 Score=35.06 Aligned_cols=30 Identities=0% Similarity=-0.027 Sum_probs=17.3
Q ss_pred HhHHhh-CCCeEEEEcCHHHH---hhhhHHHHHc
Q 046601 133 KPLEVR-SPLGIHVLMTNGIL---TAGVLKLCYQ 162 (233)
Q Consensus 133 ~~~~~~-~~~rVGVLAT~gTi---~sglY~~~l~ 162 (233)
+.+... +.+||+++..+... ...-|++.++
T Consensus 135 ~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~ 168 (392)
T 3lkb_A 135 EYIAREKKGAKVALVVHPSPFGRAPVEDARKAAR 168 (392)
T ss_dssp HHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHH
Confidence 445554 68999999865332 2223555554
No 43
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=68.67 E-value=4.5 Score=34.55 Aligned_cols=57 Identities=5% Similarity=-0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCcEEeeccchhhhh--HHhhc-CCCCeech--------------------------hchHhHHhhCCCeE
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIW--HDEVS-CFVPFLHV--------------------------TKSKPLEVRSPLGI 143 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~--~del~-~~vPii~i--------------------------~tv~~~~~~~~~rV 143 (233)
.+.+.+++.++++|+-|..+.... .+.++ .++|+|.. ..++.+...+.+||
T Consensus 63 ~~~~li~~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~i 142 (368)
T 4eyg_A 63 LAQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIKKV 142 (368)
T ss_dssp HHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHhcCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCCEE
Confidence 333344457888888665554432 33333 55665532 12233444567899
Q ss_pred EEEcCH
Q 046601 144 HVLMTN 149 (233)
Q Consensus 144 GVLAT~ 149 (233)
+++..+
T Consensus 143 a~i~~~ 148 (368)
T 4eyg_A 143 ATLTSD 148 (368)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 999754
No 44
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=68.19 E-value=5.2 Score=35.29 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV 129 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i 129 (233)
.++++||++|++.|-++ ....++. +++|+++|
T Consensus 187 a~~eAGA~~ivlE~vp~-~~a~~it~~l~iP~igI 220 (281)
T 1oy0_A 187 AVAEAGAFAVVMEMVPA-ELATQITGKLTIPTVGI 220 (281)
T ss_dssp HHHHHTCSEEEEESCCH-HHHHHHHHHCSSCEEEE
T ss_pred HHHHcCCcEEEEecCCH-HHHHHHHHhCCCCEEEe
Confidence 88999999999999775 4456666 89999999
No 45
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=68.16 E-value=5.1 Score=34.50 Aligned_cols=36 Identities=6% Similarity=-0.008 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCcEEeeccchhhhh--HHhhc-CCCCeec
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIW--HDEVS-CFVPFLH 128 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~--~del~-~~vPii~ 128 (233)
...+.+++.|+++|+-|.++.... .+.++ .++|+|.
T Consensus 62 ~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 100 (375)
T 3i09_A 62 KAREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYIN 100 (375)
T ss_dssp HHHHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhhCCCEEEECCCCcHHHHHHHHHHHHcCceEEE
Confidence 333345557888888776655442 33333 4555554
No 46
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=67.79 E-value=9.5 Score=34.08 Aligned_cols=69 Identities=14% Similarity=-0.008 Sum_probs=43.1
Q ss_pred CCCCcchhhhhhHHHHHHHHHH--HHHHcCCcEEeeccchhhhhHHhhc--CCCCee-ch--------hchHhHHhhCCC
Q 046601 75 SLNGRSDLLKLEHALIAENLWS--FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFL-HV--------TKSKPLEVRSPL 141 (233)
Q Consensus 75 ~~~~~~~~~~~~~~~I~~~l~~--~Le~~Gad~IVIaCNTAH~~~del~--~~vPii-~i--------~tv~~~~~~~~~ 141 (233)
-+++|.+..-. .-+-+.+.+ .++++|||+|++.|-+.-..+.++. +++|++ +| .+.+++.+.|.+
T Consensus 175 ~I~ARtda~a~--~gl~~ai~Ra~Ay~eAGAd~i~~e~~~~~e~~~~i~~~l~~P~lan~~~~g~~~~~~~~eL~~lGv~ 252 (318)
T 1zlp_A 175 FLVARTDARAP--HGLEEGIRRANLYKEAGADATFVEAPANVDELKEVSAKTKGLRIANMIEGGKTPLHTPEEFKEMGFH 252 (318)
T ss_dssp EEEEEECTHHH--HHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHHHHHHHTCC
T ss_pred EEEEeeHHhhh--cCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCe
Confidence 46788776521 112222222 7788999999999975333455555 789975 54 245677777776
Q ss_pred eEEE
Q 046601 142 GIHV 145 (233)
Q Consensus 142 rVGV 145 (233)
+|-+
T Consensus 253 ~v~~ 256 (318)
T 1zlp_A 253 LIAH 256 (318)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
No 47
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=67.51 E-value=1.6 Score=37.47 Aligned_cols=30 Identities=3% Similarity=-0.129 Sum_probs=17.5
Q ss_pred HhHHhhCCCeEEEEcCHHHH---hhhhHHHHHc
Q 046601 133 KPLEVRSPLGIHVLMTNGIL---TAGVLKLCYQ 162 (233)
Q Consensus 133 ~~~~~~~~~rVGVLAT~gTi---~sglY~~~l~ 162 (233)
+.+...+.+||++++.+... ...-|++.++
T Consensus 144 ~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~ 176 (375)
T 4evq_A 144 DAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFT 176 (375)
T ss_dssp HHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEEecCchHHHHHHHHHHHHHH
Confidence 44555578999999754322 2334555554
No 48
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=66.72 E-value=6.3 Score=34.72 Aligned_cols=79 Identities=8% Similarity=0.053 Sum_probs=45.6
Q ss_pred hhhhcCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEeeccchhhhhHHhhc--CCCCeech--------hch
Q 046601 63 KDLLSHERNSLPSLNGRSDLLKLEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV--------TKS 132 (233)
Q Consensus 63 ~~il~~~~~p~~~~~~~~~~~~~~~~~I~~~l~~~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i--------~tv 132 (233)
+++..-+.+|---+++|.+....+-+++++.. +.++++|||+|+++|-+.-.-+.++. +++|++ | .+.
T Consensus 143 ~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra-~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~i-i~~~g~~~~~~~ 220 (287)
T 3b8i_A 143 RAALEARVDPALTIIARTNAELIDVDAVIQRT-LAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLM-LVTYGNPQLRDD 220 (287)
T ss_dssp HHHHHHCCSTTSEEEEEEETTTSCHHHHHHHH-HHHHHTTCSEEEEECCCSHHHHHHHHTTCCSCEE-EECTTCGGGCCH
T ss_pred HHHHHcCCCCCcEEEEechhhhcCHHHHHHHH-HHHHHcCCCEEEecCCCCHHHHHHHHHhCCCCEE-EeCCCCCCCCCH
Confidence 44443333333447888776111112222222 17788999999999965334455555 789988 7 245
Q ss_pred HhHHhhCCCeE
Q 046601 133 KPLEVRSPLGI 143 (233)
Q Consensus 133 ~~~~~~~~~rV 143 (233)
+++.+.|.++|
T Consensus 221 ~eL~~lGv~~v 231 (287)
T 3b8i_A 221 ARLARLGVRVV 231 (287)
T ss_dssp HHHHHTTEEEE
T ss_pred HHHHHcCCcEE
Confidence 66776665443
No 49
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=63.67 E-value=11 Score=33.16 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=42.5
Q ss_pred CCCCcchhhhhhHHHHHHHHHH--HHHHcCCcEEeeccchhhhhHHhhc--CCCCee-ch--------hchHhHHhhCCC
Q 046601 75 SLNGRSDLLKLEHALIAENLWS--FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFL-HV--------TKSKPLEVRSPL 141 (233)
Q Consensus 75 ~~~~~~~~~~~~~~~I~~~l~~--~Le~~Gad~IVIaCNTAH~~~del~--~~vPii-~i--------~tv~~~~~~~~~ 141 (233)
-+++|.+..-. +-+-+.+.+ .++.+|||+|++.|-+.-..+.++. +++|++ || .+.+++.+.|.+
T Consensus 153 ~i~aRtda~~~--~gl~~ai~ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~~~eL~~~G~~ 230 (295)
T 1xg4_A 153 VIMARTDALAV--EGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVA 230 (295)
T ss_dssp EEEEEECCHHH--HCHHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCS
T ss_pred EEEEecHHhhh--cCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHcCCCEEEEecccCCCCCCCHHHHHHcCCC
Confidence 36777765421 111222222 7888999999999975333445554 778975 45 256777777776
Q ss_pred eEEE
Q 046601 142 GIHV 145 (233)
Q Consensus 142 rVGV 145 (233)
+|-+
T Consensus 231 ~v~~ 234 (295)
T 1xg4_A 231 MALY 234 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
No 50
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=63.26 E-value=5.3 Score=33.82 Aligned_cols=55 Identities=9% Similarity=-0.078 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHH-HHcCCcEEeeccchhhhh--HHhhc--CCCCeech--hchHhHHh
Q 046601 83 LKLEHALIAENLWSFL-EKLGACYSVIPCHIYRIW--HDEVS--CFVPFLHV--TKSKPLEV 137 (233)
Q Consensus 83 ~~~~~~~I~~~l~~~L-e~~Gad~IVIaCNTAH~~--~del~--~~vPii~i--~tv~~~~~ 137 (233)
+..+++.+.+.+.+.+ ...|+|+|++.|--.+.+ .++++ .++|+++- .++.++.+
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~adaivL~CT~l~~l~~i~~le~~lg~PVids~~a~~w~~lr 221 (240)
T 3ixl_A 160 ARVDTATLVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVPVVSSSPAGFWDAVR 221 (240)
T ss_dssp HTCCHHHHHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSSCEEEHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhhcCCCCCEEEEeCCCCchhhhHHHHHHHhCCCEEeHHHHHHHHHHH
Confidence 4456666666655546 778999999999766665 47777 89999997 44444433
No 51
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=63.25 E-value=1.3 Score=39.84 Aligned_cols=128 Identities=15% Similarity=0.078 Sum_probs=76.5
Q ss_pred CcchhhhhhHHHHHHHHHH-HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech---h-chHhHHhhC--CCeEEEE--
Q 046601 78 GRSDLLKLEHALIAENLWS-FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV---T-KSKPLEVRS--PLGIHVL-- 146 (233)
Q Consensus 78 ~~~~~~~~~~~~I~~~l~~-~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i---~-tv~~~~~~~--~~rVGVL-- 146 (233)
.|.+...++.+.|...+.. .|+.+|+|-++.= -.|. ++++ +++|+-|+ + -++++++.. .+..-|+
T Consensus 95 aRQDr~~~~repisak~vA~lL~~~G~drvit~--DlH~--~qiqgfF~ipvd~l~a~p~l~~~i~~~~~~~~~~vVVsp 170 (326)
T 3s5j_B 95 ARQDKKDKSRAPISAKLVANMLSVAGADHIITM--DLHA--SQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSP 170 (326)
T ss_dssp TTCCSCTTSSCCCHHHHHHHHHHHHTCSEEEEE--SCSS--GGGGGGCSSCEEEECSHHHHHHHHHHHCTTGGGCEEEES
T ss_pred cccCCcCCCCCCEeHHHHHHHHHHcCCCEEEEE--eCCC--hHHHhhcCCceeceEcHHHHHHHHHHhcCcCCCcEEEEE
Confidence 4666666666777777777 8889999988742 2343 6777 79999888 2 234555432 1233343
Q ss_pred cCHHHHhhhhHHHHHc------cc----cCcchhhhHHHHHHhcCC----cH---HHHHHHHHHHHHHhhCCCCEEEEcC
Q 046601 147 MTNGILTAGVLKLCYQ------IK----ATMEHTLIPAVDALNRKD----VE---GATNLLRRALQVLLARAVNIVILAS 209 (233)
Q Consensus 147 AT~gTi~sglY~~~l~------~~----~~q~~~v~~~I~~vk~G~----~~---~~~~~l~~~~~~l~~~gaD~vILGC 209 (233)
.+-|......+-+.+. ++ ....+ .+..+..++ |. .+ ..-..+.++.+.+.++|+..+...|
T Consensus 171 d~Ggv~~A~~lA~~L~~~~~~i~K~r~~~~~v~-~~~l~g~v~-gk~viIVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~ 248 (326)
T 3s5j_B 171 DAGGAKRVTSIADRLNVDFALIHKERKKANEVD-RMVLVGDVK-DRVAILVDDMADTCGTICHAADKLLSAGATRVYAIL 248 (326)
T ss_dssp SGGGHHHHHHHHHHHTCEEEEEEEC-------C-CEEEESCCT-TSEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCchHHHHHHHHHcCCCEEEEEEEecCCCeee-EEeccccCC-CCEEEEEccccCCcHHHHHHHHHHHHcCCCEEEEEE
Confidence 3456676777777765 11 11101 111111122 22 01 1235677888889999999999999
Q ss_pred Cc
Q 046601 210 ND 211 (233)
Q Consensus 210 TE 211 (233)
||
T Consensus 249 tH 250 (326)
T 3s5j_B 249 TH 250 (326)
T ss_dssp EE
T ss_pred Ee
Confidence 98
No 52
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=62.89 E-value=4.8 Score=34.76 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=38.6
Q ss_pred CCCcchhhh---hh-HHHHHHHHHH--HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech---h-------chHhHHh
Q 046601 76 LNGRSDLLK---LE-HALIAENLWS--FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV---T-------KSKPLEV 137 (233)
Q Consensus 76 ~~~~~~~~~---~~-~~~I~~~l~~--~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i---~-------tv~~~~~ 137 (233)
.++|.+..- .+ .+.+-+.+.+ .++++|||+|+++|-+.-....++. +++|+ ++ + +.+++.+
T Consensus 149 v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~~~~~~~~~i~~~~~~P~-n~~~~~~~~~p~~~~~eL~~ 227 (255)
T 2qiw_A 149 INGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGLSTAEQVERLVDAVSVPV-NITAHPVDGHGAGDLATLAG 227 (255)
T ss_dssp EEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCCCSHHHHHHHHTTCSSCB-EEECBTTTBBTTBCHHHHHH
T ss_pred EEEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHhCCCCE-EEEecCCCCCCCCCHHHHHH
Confidence 678877531 11 1112223333 7788999999999964323445554 66775 33 1 3556666
Q ss_pred hCCCeE
Q 046601 138 RSPLGI 143 (233)
Q Consensus 138 ~~~~rV 143 (233)
.|.++|
T Consensus 228 lGv~~v 233 (255)
T 2qiw_A 228 LGVRRV 233 (255)
T ss_dssp TTCCEE
T ss_pred cCCCEE
Confidence 665544
No 53
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=62.55 E-value=7.2 Score=33.68 Aligned_cols=36 Identities=6% Similarity=-0.175 Sum_probs=19.3
Q ss_pred HHHHHHHHcCCcEEeeccchhhhh--HHhhc-CCCCeec
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIW--HDEVS-CFVPFLH 128 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~--~del~-~~vPii~ 128 (233)
...+..++.|+++|+-|.++.... .+.++ .++|+|.
T Consensus 64 ~~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 102 (379)
T 3n0w_A 64 IAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFI 102 (379)
T ss_dssp HHHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhCCceEEEcCCCcHHHHHHHHHHHHcCceEEE
Confidence 333344557888888776554432 23333 4455444
No 54
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=62.45 E-value=12 Score=31.82 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCcEEeeccchhhhhHHhhc--C--CCCeech--hchHh
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIWHDEVS--C--FVPFLHV--TKSKP 134 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~~del~--~--~vPii~i--~tv~~ 134 (233)
..++.|.+.|+|.||+.|--...+.++++ . ++|+++- .+++.
T Consensus 167 ~~~~~l~~~~~d~iVLGCTh~p~l~~~i~~~~~~~vpviDs~~~~a~~ 214 (267)
T 2gzm_A 167 ETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETARE 214 (267)
T ss_dssp HHHHHHHHSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcccChHHHHHHHHHHcCCCCEEECcHHHHHHH
Confidence 33335567899999999965555567777 4 7999996 44443
No 55
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=60.91 E-value=23 Score=30.56 Aligned_cols=17 Identities=6% Similarity=-0.129 Sum_probs=11.8
Q ss_pred HhHHhhCCCeEEEEcCH
Q 046601 133 KPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 133 ~~~~~~~~~rVGVLAT~ 149 (233)
+.+...+.+||++++.+
T Consensus 133 ~~l~~~g~~~ia~i~~~ 149 (385)
T 1pea_A 133 AYLIRHYGERVVFIGSD 149 (385)
T ss_dssp HHHHTTTCSEEEEEEES
T ss_pred HHHHHccCcEEEEEeCC
Confidence 34445567899999764
No 56
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=60.88 E-value=23 Score=31.42 Aligned_cols=70 Identities=11% Similarity=-0.093 Sum_probs=42.9
Q ss_pred CCCCcchhhh-hhHHHHHHHHHHHHHHcCCcEEeeccchhhhhHHhhc--CCCCee-ch--------hchHhHHhhCCCe
Q 046601 75 SLNGRSDLLK-LEHALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVS--CFVPFL-HV--------TKSKPLEVRSPLG 142 (233)
Q Consensus 75 ~~~~~~~~~~-~~~~~I~~~l~~~Le~~Gad~IVIaCNTAH~~~del~--~~vPii-~i--------~tv~~~~~~~~~r 142 (233)
-+++|.+... .+-++.++... .++.+|||+|+++|-+.-..+.++. +++|++ +| .+.+++.+.|.++
T Consensus 161 ~I~ARtda~~~~g~~~ai~Ra~-ay~eAGAD~i~~e~~~~~~~~~~i~~~~~~P~~~n~~~~g~tp~~~~~eL~~lGv~~ 239 (305)
T 3ih1_A 161 YIVARTDARGVEGLDEAIERAN-AYVKAGADAIFPEALQSEEEFRLFNSKVNAPLLANMTEFGKTPYYSAEEFANMGFQM 239 (305)
T ss_dssp EEEEEECCHHHHCHHHHHHHHH-HHHHHTCSEEEETTCCSHHHHHHHHHHSCSCBEEECCTTSSSCCCCHHHHHHTTCSE
T ss_pred EEEEeeccccccCHHHHHHHHH-HHHHcCCCEEEEcCCCCHHHHHHHHHHcCCCEEEeecCCCCCCCCCHHHHHHcCCCE
Confidence 3677876542 11222222211 6678899999999986534455554 788986 44 2457788777766
Q ss_pred EEE
Q 046601 143 IHV 145 (233)
Q Consensus 143 VGV 145 (233)
|-.
T Consensus 240 v~~ 242 (305)
T 3ih1_A 240 VIY 242 (305)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 57
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=60.15 E-value=11 Score=32.25 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=29.0
Q ss_pred HHHHcCCcEEeeccchhhhhHHhhc--C--CCCeech--hchHhH
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEVS--C--FVPFLHV--TKSKPL 135 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del~--~--~vPii~i--~tv~~~ 135 (233)
.|.+.|+|.||+.|--.....+.++ . ++|+|+- .+++.+
T Consensus 175 ~l~~~~~D~IVLGCTh~p~l~~~i~~~~~~~v~vIDs~~~~a~~~ 219 (276)
T 2dwu_A 175 PLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIEL 219 (276)
T ss_dssp HHHTSCCSEEEECSTTGGGGHHHHHHHHCTTSEEEEHHHHHHHHH
T ss_pred HHHhcCCCEEEECCCCHHHHHHHHHHHcCCCCeEECcHHHHHHHH
Confidence 5667899999999985555567787 4 7999996 444443
No 58
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=59.94 E-value=18 Score=30.85 Aligned_cols=40 Identities=10% Similarity=-0.098 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCcEEeeccchhhh--hHHhhc-CCCCeech
Q 046601 90 IAENLWSFLEKLGACYSVIPCHIYRI--WHDEVS-CFVPFLHV 129 (233)
Q Consensus 90 I~~~l~~~Le~~Gad~IVIaCNTAH~--~~del~-~~vPii~i 129 (233)
....+.+.+.+.++++|+-|..+... ..+.++ .++|+|..
T Consensus 69 ~~~~~~~l~~~~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~ 111 (366)
T 3td9_A 69 AANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTP 111 (366)
T ss_dssp HHHHHHHHHHTSCCSEEEECSSHHHHHHHHHHHHHTTCCEEES
T ss_pred HHHHHHHHhccCCeEEEEccCCchhHHHHHHHHHhCCCeEEec
Confidence 33333334455569888877655433 234444 56666654
No 59
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=58.85 E-value=45 Score=27.80 Aligned_cols=70 Identities=11% Similarity=-0.038 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCcEEeeccchhhhhHHhhcCCCCeech-h------------------------------chHhHHhh--C
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV-T------------------------------KSKPLEVR--S 139 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i-~------------------------------tv~~~~~~--~ 139 (233)
...+.|.+.++|.|++....+.........++|+|-+ . +++.+.+. |
T Consensus 60 ~~~~~l~~~~vDgII~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~~~~~~~~~~l~~~~Pg 139 (302)
T 2qh8_A 60 QIARQFVGENPDVLVGIATPTAQALVSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPN 139 (302)
T ss_dssp HHHHHHHHTCCSEEEEESHHHHHHHHHHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCCCEEEECChHHHHHHHhcCCCcCEEEEecCCHhhcCccccccCCCCCEEEEECCcCHHHHHHHHHHhCCC
Confidence 3455677889999987654333222222256776643 1 12556555 7
Q ss_pred CCeEEEEcCHHH----HhhhhHHHHHc
Q 046601 140 PLGIHVLMTNGI----LTAGVLKLCYQ 162 (233)
Q Consensus 140 ~~rVGVLAT~gT----i~sglY~~~l~ 162 (233)
.+|||+++.+.. -+..-|++.++
T Consensus 140 ~~~I~~i~~~~~~~~~~r~~g~~~al~ 166 (302)
T 2qh8_A 140 VKSIGVVYNPGEANAVSLMELLKLSAA 166 (302)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHH
Confidence 899999976532 22234555554
No 60
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=56.42 E-value=13 Score=31.77 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCcEEeeccchhhhhHHhhc--C--CCCeech--hchHh
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIWHDEVS--C--FVPFLHV--TKSKP 134 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~~del~--~--~vPii~i--~tv~~ 134 (233)
..++.|.+.|+|.||+.|--.....+.++ . ++|+|+- .+++.
T Consensus 168 ~~l~~l~~~~~D~iVLGCTh~pll~~~i~~~~~~~v~vIDs~~~~a~~ 215 (272)
T 1zuw_A 168 TSLYPLKDTSIDSLILGCTHYPILKEAIQRYMGEHVNIISSGDETARE 215 (272)
T ss_dssp HHHHHHHHSCCSEEEEESTTGGGGHHHHHHHHCTTSEEEEHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECccCHHHHHHHHHHHcCCCCeEECcHHHHHHH
Confidence 33345667899999999985555567776 4 7999996 44443
No 61
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=52.99 E-value=13 Score=32.06 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHhhCCCCEEEEcCCccc
Q 046601 183 VEGATNLLRRALQVLLARAVNIVILASNDIL 213 (233)
Q Consensus 183 ~~~~~~~l~~~~~~l~~~gaD~vILGCTElP 213 (233)
.++..+.+.+.++.|.++|+|.+|++|-=-+
T Consensus 51 ~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~ 81 (268)
T 3out_A 51 RATIQKFAAQTAKFLIDQEVKAIIIACNTIS 81 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCChH
Confidence 3566778888899999999999999996554
No 62
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=51.76 E-value=13 Score=32.21 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHhhCCCCEEEEcCCccc
Q 046601 183 VEGATNLLRRALQVLLARAVNIVILASNDIL 213 (233)
Q Consensus 183 ~~~~~~~l~~~~~~l~~~gaD~vILGCTElP 213 (233)
.++..+.+.+.++.|.++|+|.+|++|-=-+
T Consensus 68 ~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~ 98 (274)
T 3uhf_A 68 KDTIIKFCLEALDFFEQFQIDMLIIACNTAS 98 (274)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCChh
Confidence 3566788888889999999999999996555
No 63
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=50.63 E-value=10 Score=32.92 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHcCCcEEeeccchhhhhHHhhc--C--CCCeech--hchHhH
Q 046601 96 SFLEKLGACYSVIPCHIYRIWHDEVS--C--FVPFLHV--TKSKPL 135 (233)
Q Consensus 96 ~~Le~~Gad~IVIaCNTAH~~~del~--~--~vPii~i--~tv~~~ 135 (233)
+.|.+.|+|.||+.|--.-.+.++++ . ++|+|+- .+++.+
T Consensus 191 ~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~ 236 (290)
T 2vvt_A 191 QALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEV 236 (290)
T ss_dssp GGGTTSCCSEEEECSTTGGGGHHHHHHHHCTTCEEEEHHHHHHHHH
T ss_pred HHHHhCCCCEEEECCcCHHHHHHHHHHHcCCCCeEECcHHHHHHHH
Confidence 35556799999999964444567776 4 7999996 444443
No 64
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=49.79 E-value=13 Score=32.11 Aligned_cols=40 Identities=5% Similarity=0.101 Sum_probs=28.6
Q ss_pred HHHHHcCCcEEeeccchhhhhHHhhc--C--CCCeech--hchHhH
Q 046601 96 SFLEKLGACYSVIPCHIYRIWHDEVS--C--FVPFLHV--TKSKPL 135 (233)
Q Consensus 96 ~~Le~~Gad~IVIaCNTAH~~~del~--~--~vPii~i--~tv~~~ 135 (233)
+.|.+.|+|.||+.|--.....++++ . ++|+|+- .+++.+
T Consensus 190 ~~l~~~g~D~IVLGCTh~p~l~~~i~~~l~~~vpvIDs~~a~a~~~ 235 (286)
T 2jfq_A 190 KRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREV 235 (286)
T ss_dssp GGGTTCSCSEEEEESSSGGGGHHHHHHHTTTCSEEEEHHHHHHHHH
T ss_pred HHHHhCCCCEEEEcCcCHHHHHHHHHHHcCCCCEEECcHHHHHHHH
Confidence 34556799999999965555567777 5 7999996 444433
No 65
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=49.34 E-value=29 Score=28.24 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCcEEeeccchhhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCHH
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTNG 150 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~g 150 (233)
...+.|.+.++|.|++........++.++ .++|+|-+ .+++++.+.|.++|++++.+.
T Consensus 54 ~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 133 (276)
T 3jy6_A 54 TLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSEL 133 (276)
T ss_dssp HHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred HHHHHHHhCCCCEEEEecCCcHHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 44456777899998766544344556665 56666544 122445556789999997644
No 66
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=48.57 E-value=58 Score=26.36 Aligned_cols=57 Identities=7% Similarity=-0.109 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCcEEeeccchh------hhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEE
Q 046601 93 NLWSFLEKLGACYSVIPCHIY------RIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIH 144 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTA------H~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVG 144 (233)
..++.|.+.++|.|++..... ...+++++ .++|++-+ ..++++.+.|.++|+
T Consensus 62 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~ 141 (298)
T 3tb6_A 62 RGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMM 141 (298)
T ss_dssp HHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEE
Confidence 344466678999998754322 13455555 56666544 123455666788999
Q ss_pred EEcCH
Q 046601 145 VLMTN 149 (233)
Q Consensus 145 VLAT~ 149 (233)
+++.+
T Consensus 142 ~i~~~ 146 (298)
T 3tb6_A 142 GIFKA 146 (298)
T ss_dssp EEEES
T ss_pred EEcCC
Confidence 99643
No 67
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=48.41 E-value=13 Score=30.38 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHc--CCcEEeeccchhhhh--HHhhc--CCCCeech
Q 046601 86 EHALIAENLWSFLEKL--GACYSVIPCHIYRIW--HDEVS--CFVPFLHV 129 (233)
Q Consensus 86 ~~~~I~~~l~~~Le~~--Gad~IVIaCNTAH~~--~del~--~~vPii~i 129 (233)
+++.+.+ +.+.+.+. |+|+|++.|--.+.+ .++++ +++|+++-
T Consensus 154 ~~~~~~~-~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVids 202 (223)
T 2dgd_A 154 PIFTIYR-LVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVVSE 202 (223)
T ss_dssp CHHHHHH-HHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEEEH
T ss_pred CHHHHHH-HHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEEEh
Confidence 3444433 33344566 999999999888774 67776 78999997
No 68
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=48.31 E-value=51 Score=26.95 Aligned_cols=69 Identities=12% Similarity=-0.085 Sum_probs=38.3
Q ss_pred HHHHHHHcCCcEEeecc-chhhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCHH
Q 046601 94 LWSFLEKLGACYSVIPC-HIYRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTNG 150 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaC-NTAH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~g 150 (233)
..+.|.+.++|.|++.. +.....++.++ .++|++-+ .+++++.+.|.++|++++.+.
T Consensus 56 ~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 135 (287)
T 3bbl_A 56 YRDLIRSGNVDGFVLSSINYNDPRVQFLLKQKFPFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPE 135 (287)
T ss_dssp HHHHHHTTCCSEEEECSCCTTCHHHHHHHHTTCCEEEESCCSTTCCCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCT
T ss_pred HHHHHHcCCCCEEEEeecCCCcHHHHHHHhcCCCEEEECCcCCCCCCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 44566677888887643 32223345554 45555443 122445556789999997542
Q ss_pred -----HHhhhhHHHHHc
Q 046601 151 -----ILTAGVLKLCYQ 162 (233)
Q Consensus 151 -----Ti~sglY~~~l~ 162 (233)
.-+..-|.+.++
T Consensus 136 ~~~~~~~R~~Gf~~~l~ 152 (287)
T 3bbl_A 136 DSRVGNDRLQGYLEAMQ 152 (287)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 122233666665
No 69
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=47.48 E-value=42 Score=27.29 Aligned_cols=58 Identities=7% Similarity=-0.047 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCcEEeecc-chhhhhHHhhc-CCCCeech----------------------hchHhHHhhCCCeEEEEc
Q 046601 92 ENLWSFLEKLGACYSVIPC-HIYRIWHDEVS-CFVPFLHV----------------------TKSKPLEVRSPLGIHVLM 147 (233)
Q Consensus 92 ~~l~~~Le~~Gad~IVIaC-NTAH~~~del~-~~vPii~i----------------------~tv~~~~~~~~~rVGVLA 147 (233)
..+.+.+.+.++|.|++.. +.....++.++ .++|+|-+ .+++++.+.|.++|++++
T Consensus 59 ~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~ 138 (292)
T 3k4h_A 59 NGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIG 138 (292)
T ss_dssp HHHHHHHHTTCCCEEEESCCBTTCHHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHcCCCCEEEEeCCCCChHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEe
Confidence 3455577788999987654 43344456665 55665543 122445556788999997
Q ss_pred CH
Q 046601 148 TN 149 (233)
Q Consensus 148 T~ 149 (233)
.+
T Consensus 139 ~~ 140 (292)
T 3k4h_A 139 GG 140 (292)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 70
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=46.64 E-value=63 Score=26.40 Aligned_cols=70 Identities=13% Similarity=-0.026 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCcEEeeccch-hhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 93 NLWSFLEKLGACYSVIPCHI-YRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNT-AH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
.+.+.+.+.++|.|++.... ....++.++ .++|+|-+ .+++++.++|.++|++++.+
T Consensus 57 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 136 (288)
T 3gv0_A 57 PIRYILETGSADGVIISKIEPNDPRVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPP 136 (288)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTCHHHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHcCCccEEEEecCCCCcHHHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 34445777899998875432 223455555 56665543 12344555678999999654
Q ss_pred H-----HHhhhhHHHHHc
Q 046601 150 G-----ILTAGVLKLCYQ 162 (233)
Q Consensus 150 g-----Ti~sglY~~~l~ 162 (233)
. .-+..-|.+.++
T Consensus 137 ~~~~~~~~R~~gf~~~l~ 154 (288)
T 3gv0_A 137 SRFSFHDHARKGFNRGIR 154 (288)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHH
Confidence 2 222333555555
No 71
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=46.58 E-value=34 Score=30.14 Aligned_cols=69 Identities=13% Similarity=-0.081 Sum_probs=41.8
Q ss_pred CCCCcchhhhhhHHHHHHHHHH--HHHHcCCcEEeeccchhhhhHHhhc--CCCCee-ch--------hchHhHHhhCCC
Q 046601 75 SLNGRSDLLKLEHALIAENLWS--FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFL-HV--------TKSKPLEVRSPL 141 (233)
Q Consensus 75 ~~~~~~~~~~~~~~~I~~~l~~--~Le~~Gad~IVIaCNTAH~~~del~--~~vPii-~i--------~tv~~~~~~~~~ 141 (233)
-+|+|.+-... +-+-+.+.+ ....+|||+|.++|-+.-.-+.++. +++|++ +| .+.+++.+.|.+
T Consensus 157 ~I~ARTDa~~~--~gldeai~Ra~ay~~AGAD~if~~~~~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~~eL~~lGv~ 234 (298)
T 3eoo_A 157 VIMARTDAAAA--EGIDAAIERAIAYVEAGADMIFPEAMKTLDDYRRFKEAVKVPILANLTEFGSTPLFTLDELKGANVD 234 (298)
T ss_dssp EEEEEECTHHH--HHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHHCSCBEEECCTTSSSCCCCHHHHHHTTCC
T ss_pred EEEEeehhhhh--cCHHHHHHHHHhhHhcCCCEEEeCCCCCHHHHHHHHHHcCCCeEEEeccCCCCCCCCHHHHHHcCCe
Confidence 46888776532 122222333 5567899999999975322244444 678874 55 245778887776
Q ss_pred eEEE
Q 046601 142 GIHV 145 (233)
Q Consensus 142 rVGV 145 (233)
+|-+
T Consensus 235 ~v~~ 238 (298)
T 3eoo_A 235 IALY 238 (298)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6644
No 72
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=45.37 E-value=39 Score=28.92 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCcEEeeccchh-hhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEc
Q 046601 93 NLWSFLEKLGACYSVIPCHIY-RIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLM 147 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTA-H~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLA 147 (233)
.+.+.|.+.++|.|++..... ...++.+. .++|+|-+ .+++++.+.|.++||+++
T Consensus 119 ~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~ 196 (366)
T 3h5t_A 119 SAQQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPAAQALIDAGHRKIGILS 196 (366)
T ss_dssp HHHHHHHTCCCSCEEEESCCTTCHHHHHHHHHTCCEEEESSCCSCTTCCEEEECHHHHTHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHhCCCCEEEEecCCCChHHHHHHHHCCCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEe
Confidence 445677888999998765432 23345554 45554433 233456667889999998
No 73
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=44.89 E-value=57 Score=26.70 Aligned_cols=69 Identities=12% Similarity=-0.079 Sum_probs=39.5
Q ss_pred HHHHHHHcCCcEEeeccchh-hhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCHH
Q 046601 94 LWSFLEKLGACYSVIPCHIY-RIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTNG 150 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTA-H~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~g 150 (233)
..+.|.+.++|.|++..... ...++.++ .++|++-+ .+++++.+.|.++||+++.+.
T Consensus 59 ~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 138 (290)
T 2rgy_A 59 AVRFLIGRDCDGVVVISHDLHDEDLDELHRMHPKMVFLNRAFDALPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPF 138 (290)
T ss_dssp HHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCT
T ss_pred HHHHHHhcCccEEEEecCCCCHHHHHHHhhcCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 45566778999988754332 23445554 45665543 122445556789999997542
Q ss_pred -----HHhhhhHHHHHc
Q 046601 151 -----ILTAGVLKLCYQ 162 (233)
Q Consensus 151 -----Ti~sglY~~~l~ 162 (233)
.-+..-|.+.++
T Consensus 139 ~~~~~~~R~~Gf~~al~ 155 (290)
T 2rgy_A 139 TASDNVERLDGFFDELA 155 (290)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 122233666665
No 74
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=44.76 E-value=21 Score=30.80 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCEEEEcCCccccC-CCC-CCCCCCeEec
Q 046601 184 EGATNLLRRALQVLLARAVNIVILASNDILDL-LPP-DDPLFNKCID 228 (233)
Q Consensus 184 ~~~~~~l~~~~~~l~~~gaD~vILGCTElPll-~~~-~~~~~v~iID 228 (233)
++..+...+.++.|.++|+|.+|++|.=-+.+ ++. ....++|+|.
T Consensus 50 ~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 50 EEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 45567788888999999999999999766542 333 1122455554
No 75
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=44.21 E-value=84 Score=25.75 Aligned_cols=70 Identities=4% Similarity=0.010 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCcEEeecc-chhhhhHHhhc-CCCCeech-----------------------hchHhHHhhCCCeEEEEc
Q 046601 93 NLWSFLEKLGACYSVIPC-HIYRIWHDEVS-CFVPFLHV-----------------------TKSKPLEVRSPLGIHVLM 147 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaC-NTAH~~~del~-~~vPii~i-----------------------~tv~~~~~~~~~rVGVLA 147 (233)
.+.+.|.+.++|.|++.. +.....++.++ .++|+|-+ .+++++.+.|.++||+++
T Consensus 59 ~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 138 (295)
T 3hcw_A 59 EVYKMIKQRMVDAFILLYSKENDPIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIEQGVDELIFIT 138 (295)
T ss_dssp HHHHHHHTTCCSEEEESCCCTTCHHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHhCCcCEEEEcCcccChHHHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHHcCCccEEEEc
Confidence 455577788999988753 32233345555 55555433 223445556889999997
Q ss_pred CHH-----HHhhhhHHHHHc
Q 046601 148 TNG-----ILTAGVLKLCYQ 162 (233)
Q Consensus 148 T~g-----Ti~sglY~~~l~ 162 (233)
.+. .-+..-|.+.++
T Consensus 139 ~~~~~~~~~~R~~Gf~~al~ 158 (295)
T 3hcw_A 139 EKGNFEVSKDRIQGFETVAS 158 (295)
T ss_dssp ESSCCHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHHHHHHH
Confidence 542 122334666665
No 76
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=43.54 E-value=19 Score=30.32 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCEEEEcCCccc-cCCCC-CCCCCCeEec
Q 046601 184 EGATNLLRRALQVLLARAVNIVILASNDIL-DLLPP-DDPLFNKCID 228 (233)
Q Consensus 184 ~~~~~~l~~~~~~l~~~gaD~vILGCTElP-ll~~~-~~~~~v~iID 228 (233)
+...+.+.+.++.|.+.|+|++|.+|+=.+ .+.+. ....++|+|.
T Consensus 45 ~~i~~~~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvig 91 (254)
T 1b73_A 45 DTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFG 91 (254)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 345667778888888899999999999876 33443 1223566665
No 77
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=43.34 E-value=55 Score=26.17 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCcEEeeccch--hhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcC
Q 046601 93 NLWSFLEKLGACYSVIPCHI--YRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMT 148 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNT--AH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT 148 (233)
...+.|.+.++|.|++.... ....++.++ .++|++-+ ..++++.++|.++|++++.
T Consensus 49 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~ 128 (272)
T 3o74_A 49 QLQQLFRARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLSSAPRSIALIGA 128 (272)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCccccCEEEEchHHHHHHHHHHHHHCCCcEEEEEec
Confidence 34456777899998775433 233456665 66666544 1224455567899999964
No 78
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=43.32 E-value=22 Score=30.29 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCEEEEcCCcccc-CCCC-CCCCCCeEec
Q 046601 184 EGATNLLRRALQVLLARAVNIVILASNDILD-LLPP-DDPLFNKCID 228 (233)
Q Consensus 184 ~~~~~~l~~~~~~l~~~gaD~vILGCTElPl-l~~~-~~~~~v~iID 228 (233)
+...+.+.++++.|.++|+|++|++|.=.+- .++. ....++|+|.
T Consensus 57 ~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 57 KQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 4556788888888998999999999987763 2333 1223456664
No 79
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=43.21 E-value=64 Score=25.89 Aligned_cols=69 Identities=12% Similarity=0.010 Sum_probs=37.4
Q ss_pred HHHHHHHcCCcEEeec-cchhhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCHH
Q 046601 94 LWSFLEKLGACYSVIP-CHIYRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTNG 150 (233)
Q Consensus 94 l~~~Le~~Gad~IVIa-CNTAH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~g 150 (233)
..+.|...++|.+++. ++.....++.++ .++|++-+ ..++++.+.|.++|++++.+.
T Consensus 51 ~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~ 130 (275)
T 3d8u_A 51 LLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARG 130 (275)
T ss_dssp HHHHHHTSCCCCEEEESSCCCHHHHHHHHHHTCCEEEESSSCSSSSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSC
T ss_pred HHHHHHhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEeeccCCCCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 3445667788877654 433233445554 45554432 123445556788999997542
Q ss_pred -----HHhhhhHHHHHc
Q 046601 151 -----ILTAGVLKLCYQ 162 (233)
Q Consensus 151 -----Ti~sglY~~~l~ 162 (233)
.-+..-|++.++
T Consensus 131 ~~~~~~~R~~gf~~~l~ 147 (275)
T 3d8u_A 131 NHSTLQRQLHGWQSAMI 147 (275)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHH
Confidence 122333566665
No 80
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=42.76 E-value=83 Score=25.91 Aligned_cols=70 Identities=10% Similarity=-0.046 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCcEEeeccchhhhhHHhhcCCCCeech-------------------------------hchHhHHhh--C
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPFLHV-------------------------------TKSKPLEVR--S 139 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~~del~~~vPii~i-------------------------------~tv~~~~~~--~ 139 (233)
..++.|.+.++|.|++....+.........++|+|-+ .+++.+.+. |
T Consensus 53 ~~~~~l~~~~vDgII~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~~~~~~~~~~~~l~~~~pg 132 (295)
T 3lft_A 53 TMSKQLVANGNDLVVGIATPAAQGLASATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIKALTPN 132 (295)
T ss_dssp HHHHHHTTSSCSEEEEESHHHHHHHHHHCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEEECCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCCCEEEECCcHHHHHHHHcCCCCCEEEEeccChhhcCccccccCCCCcEEEEECCccHHHHHHHHHHhCCC
Confidence 4455677889999987764433222222245666543 113455555 7
Q ss_pred CCeEEEEcCHHH----HhhhhHHHHHc
Q 046601 140 PLGIHVLMTNGI----LTAGVLKLCYQ 162 (233)
Q Consensus 140 ~~rVGVLAT~gT----i~sglY~~~l~ 162 (233)
.+|||+++.+.. -+..-|++.++
T Consensus 133 ~~~I~~i~~~~~~~~~~r~~g~~~al~ 159 (295)
T 3lft_A 133 VKTIGALYSSSEDNSKTQVEEFKAYAE 159 (295)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHH
Confidence 899999975532 12234555554
No 81
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=41.97 E-value=34 Score=29.93 Aligned_cols=64 Identities=16% Similarity=-0.014 Sum_probs=36.7
Q ss_pred CCCCcchhh--hhhHHHHHHHHHHHHHHcCCcEEeecc-chhhhhHHhhc--CC--CCee-ch-----hchHhHHhhC
Q 046601 75 SLNGRSDLL--KLEHALIAENLWSFLEKLGACYSVIPC-HIYRIWHDEVS--CF--VPFL-HV-----TKSKPLEVRS 139 (233)
Q Consensus 75 ~~~~~~~~~--~~~~~~I~~~l~~~Le~~Gad~IVIaC-NTAH~~~del~--~~--vPii-~i-----~tv~~~~~~~ 139 (233)
-+++|.+.. ..+-+++++... .++++|||+|++.| -+.-.-+.++. ++ +|++ ++ .+.+++.+.|
T Consensus 151 ~i~aRtda~~a~~g~~~ai~Ra~-ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG 227 (290)
T 2hjp_A 151 VVIARVEALIAGLGQQEAVRRGQ-AYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALS 227 (290)
T ss_dssp EEEEEECTTTTTCCHHHHHHHHH-HHHHTTCSEEEECCCCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCT
T ss_pred EEEEeehHhhccccHHHHHHHHH-HHHHcCCcEEEeCCCCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcC
Confidence 367777654 112222222211 77789999999999 64323344444 55 8977 33 2456666665
No 82
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=41.39 E-value=84 Score=25.43 Aligned_cols=69 Identities=7% Similarity=-0.014 Sum_probs=39.2
Q ss_pred HHHHHHHcCCcEEeeccchhh---hhHHhhc-CCCCeech----------------------hchHhHHhhCC--CeEEE
Q 046601 94 LWSFLEKLGACYSVIPCHIYR---IWHDEVS-CFVPFLHV----------------------TKSKPLEVRSP--LGIHV 145 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTAH---~~~del~-~~vPii~i----------------------~tv~~~~~~~~--~rVGV 145 (233)
.++.|.+.++|.|++...... ..++.++ .++|+|-+ .+++++.+.+. ++|++
T Consensus 61 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~ 140 (304)
T 3gbv_A 61 TSQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLAVNDREIVI 140 (304)
T ss_dssp HHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEE
T ss_pred HHHHHHhcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHHHhCCCCeEEE
Confidence 344667789999877654322 2345554 45555443 12344555666 89999
Q ss_pred Ec---------CHHHHhhhhHHHHHc
Q 046601 146 LM---------TNGILTAGVLKLCYQ 162 (233)
Q Consensus 146 LA---------T~gTi~sglY~~~l~ 162 (233)
+. +...-+..-|.+.++
T Consensus 141 i~~~~~g~~~~~~~~~R~~gf~~~l~ 166 (304)
T 3gbv_A 141 FRKIHEGVIGSNQQESREIGFRQYMQ 166 (304)
T ss_dssp EEEEBTTBCCCHHHHHHHHHHHHHHH
T ss_pred EEecccCCccchhHHHHHHHHHHHHH
Confidence 96 222334444666665
No 83
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=41.27 E-value=41 Score=29.55 Aligned_cols=32 Identities=6% Similarity=-0.111 Sum_probs=17.7
Q ss_pred HHHHcCCcEEeeccchhhhhHHhhc-CCCCeech
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEVS-CFVPFLHV 129 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del~-~~vPii~i 129 (233)
.+.+.|+..+..+|++ ..+++.+. .++-++++
T Consensus 239 ~i~~~g~~~i~~~~G~-~~~l~~l~~~g~d~~~~ 271 (359)
T 2inf_A 239 ELAKENVPLIMFGVGA-SHLAGDWHDLPLDVVGL 271 (359)
T ss_dssp HHGGGCSCEEEECTTC-GGGHHHHHTSSCSEEEC
T ss_pred HHHHcCCcEEEEcCCc-HHHHHHHHHhCCCEEEe
Confidence 3333466666666666 44555555 55555655
No 84
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=40.74 E-value=24 Score=30.39 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=26.2
Q ss_pred cCCcEEeeccchhhhhHHhhc--C--CCCeech--hchHhH
Q 046601 101 LGACYSVIPCHIYRIWHDEVS--C--FVPFLHV--TKSKPL 135 (233)
Q Consensus 101 ~Gad~IVIaCNTAH~~~del~--~--~vPii~i--~tv~~~ 135 (233)
.|+|.||+.|--...+.++++ . ++|+|+- .+++.+
T Consensus 195 ~~~D~IVLGCTh~p~l~~~i~~~lg~~vpviDs~~a~a~~~ 235 (285)
T 2jfn_A 195 EPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRT 235 (285)
T ss_dssp SCCSEEEECSTTGGGGHHHHHHHSCTTCEEECSHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhcCCCCEEECcHHHHHHHH
Confidence 589999999986666678887 4 5999996 444443
No 85
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=40.73 E-value=64 Score=26.61 Aligned_cols=70 Identities=13% Similarity=0.001 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCcEEeec-cchhhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 93 NLWSFLEKLGACYSVIP-CHIYRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIa-CNTAH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
.+.+.|.+.++|.|++. ++.....++.++ .++|+|-+ .+++++.+.|.++||+++.+
T Consensus 74 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 153 (305)
T 3huu_A 74 EVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQES 153 (305)
T ss_dssp HHHHHHHTTCCSEEEESSCBTTCHHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred HHHHHHHhCCCCEEEEeCCcCCcHHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 45557778899998765 343334456665 55665544 12345556678999999653
Q ss_pred H-----HHhhhhHHHHHc
Q 046601 150 G-----ILTAGVLKLCYQ 162 (233)
Q Consensus 150 g-----Ti~sglY~~~l~ 162 (233)
. .-+..-|.+.++
T Consensus 154 ~~~~~~~~R~~Gf~~~l~ 171 (305)
T 3huu_A 154 GHYAVTEDRSVGFKQYCD 171 (305)
T ss_dssp SCBHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHH
Confidence 2 122333666665
No 86
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=40.36 E-value=20 Score=30.18 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCEEEEcCCcccc-CCCC-CCCCCCeEec
Q 046601 184 EGATNLLRRALQVLLARAVNIVILASNDILD-LLPP-DDPLFNKCID 228 (233)
Q Consensus 184 ~~~~~~l~~~~~~l~~~gaD~vILGCTElPl-l~~~-~~~~~v~iID 228 (233)
++..+.+.+.++.|.++|+|++|.+|.=.+. .++. ....++|+|.
T Consensus 45 ~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 45 TTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 4556778888888988999999999977662 4443 1223566765
No 87
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=40.00 E-value=62 Score=26.49 Aligned_cols=56 Identities=16% Similarity=-0.016 Sum_probs=33.7
Q ss_pred HHHHHHHcCCcEEeeccc-hhhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 94 LWSFLEKLGACYSVIPCH-IYRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCN-TAH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
..+.|.+.++|.|++... .....+++++ .++|+|-+ .+++++.+.|.++|++++.+
T Consensus 64 ~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 142 (289)
T 2fep_A 64 LLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGP 142 (289)
T ss_dssp HHHHHHHTTCSEEEECCSCCCHHHHHHHHHSSSCEEEESCCCTTCCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESC
T ss_pred HHHHHHhCCCCEEEEecCCCCHHHHHHHHhcCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 445666789998877543 2233345554 55555433 12344555678999999764
No 88
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=39.43 E-value=71 Score=25.71 Aligned_cols=55 Identities=4% Similarity=0.082 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCcEEeeccchhhhhHH-hhc-CCCCeech-------------------hchHhHHhhCCCeEEEEcC
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIWHD-EVS-CFVPFLHV-------------------TKSKPLEVRSPLGIHVLMT 148 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~~d-el~-~~vPii~i-------------------~tv~~~~~~~~~rVGVLAT 148 (233)
...+.|.+.++|.|++...+ ...++ .++ .++|+|-+ .+++++.+.|.++|++++.
T Consensus 55 ~~~~~l~~~~~dgiIi~~~~-~~~~~~~l~~~~iPvV~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~ 130 (277)
T 3e61_A 55 GYLATFVSHNCTGMISTAFN-ENIIENTLTDHHIPFVFIDRINNEHNGISTNHFKGGQLQAEVVRKGKGKNVLIVHE 130 (277)
T ss_dssp HHHHHHHHTTCSEEEECGGG-HHHHHHHHHHC-CCEEEGGGCC---------HHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHhCCCCEEEEecCC-hHHHHHHHHcCCCCEEEEeccCCCCCeEEechHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 34456777899999887633 33466 777 78888765 1234455567889999964
No 89
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=38.97 E-value=61 Score=29.37 Aligned_cols=86 Identities=14% Similarity=0.038 Sum_probs=44.8
Q ss_pred CCCCeech-------hchH---hHHhhCCCeEEEEcCHHHHhhhhHHHHHc--cccCcchhhhHHHHHHh---cCC-cHH
Q 046601 122 CFVPFLHV-------TKSK---PLEVRSPLGIHVLMTNGILTAGVLKLCYQ--IKATMEHTLIPAVDALN---RKD-VEG 185 (233)
Q Consensus 122 ~~vPii~i-------~tv~---~~~~~~~~rVGVLAT~gTi~sglY~~~l~--~~~~q~~~v~~~I~~vk---~G~-~~~ 185 (233)
...|+||| .|.. .+.+..+.|||+.+|+.-. -|.+.+. .....++.+..+...++ .+. ...
T Consensus 50 ~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~---~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~T~ 126 (437)
T 3nrs_A 50 PAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLL---RYTERVRIQGQELSEAEHSHSFAQIEAGRGDISLTY 126 (437)
T ss_dssp SSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSS---CGGGGEEETTEECCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred ccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcC---CcceEEEECCEECCHHHHHHHHHHHHHhhcCCCCCH
Confidence 46789998 2222 2333346789999998633 2556654 11111111334433332 232 111
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEcCC
Q 046601 186 ATNLLRRALQVLLARAVNIVILASN 210 (233)
Q Consensus 186 ~~~~l~~~~~~l~~~gaD~vILGCT 210 (233)
-+-....++..+.++++|.+|+=+-
T Consensus 127 fe~~t~~a~~~f~~~~~d~~VlEvG 151 (437)
T 3nrs_A 127 FEFGTLSALQLFKQAKLDVVILEVG 151 (437)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 1111123566778899999998553
No 90
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=38.90 E-value=74 Score=25.97 Aligned_cols=69 Identities=7% Similarity=0.004 Sum_probs=39.6
Q ss_pred HHHHHHHcCCcEEeeccchh-h-hhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 94 LWSFLEKLGACYSVIPCHIY-R-IWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTA-H-~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
.++.|.+.++|.|++..... . ..++.++ .++|++-+ ..++++.+.|.++|++++.+
T Consensus 68 ~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~ 147 (293)
T 2iks_A 68 CIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAETVLYLGAL 147 (293)
T ss_dssp HHHHHHHTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCCTTTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccCcCCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 44566678999998754332 2 2345555 56676543 12234455578899999643
Q ss_pred H-----HHhhhhHHHHHc
Q 046601 150 G-----ILTAGVLKLCYQ 162 (233)
Q Consensus 150 g-----Ti~sglY~~~l~ 162 (233)
. .-+..-|.+.++
T Consensus 148 ~~~~~~~~R~~Gf~~~l~ 165 (293)
T 2iks_A 148 PELSVSFLREQGFRTAWK 165 (293)
T ss_dssp TTSHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHH
Confidence 1 122333666665
No 91
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=38.72 E-value=63 Score=26.35 Aligned_cols=69 Identities=7% Similarity=-0.115 Sum_probs=37.2
Q ss_pred HHHHHHHcCCcEEeec-cchhhhhHHhhc-CCCCeech--------------------hchHhHHhhCCCeEEEEcCHH-
Q 046601 94 LWSFLEKLGACYSVIP-CHIYRIWHDEVS-CFVPFLHV--------------------TKSKPLEVRSPLGIHVLMTNG- 150 (233)
Q Consensus 94 l~~~Le~~Gad~IVIa-CNTAH~~~del~-~~vPii~i--------------------~tv~~~~~~~~~rVGVLAT~g- 150 (233)
..+.|.+.++|.|++. ++.....++.++ .++|++-+ .+++++.+.|.++|++++.+.
T Consensus 57 ~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~ 136 (290)
T 3clk_A 57 ALLTAIERPVMGILLLSIALTDDNLQLLQSSDVPYCFLSMGFDDDRPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQY 136 (290)
T ss_dssp HHHHHHSSCCSEEEEESCC----CHHHHHCC--CEEEESCC--CCSCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCC
T ss_pred HHHHHHhcCCCEEEEecccCCHHHHHHHHhCCCCEEEEcCCCCCCCCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 4445667899988764 332333455555 56666543 123445556788999997542
Q ss_pred ----HHhhhhHHHHHc
Q 046601 151 ----ILTAGVLKLCYQ 162 (233)
Q Consensus 151 ----Ti~sglY~~~l~ 162 (233)
.-+..-|.+.++
T Consensus 137 ~~~~~~R~~gf~~~l~ 152 (290)
T 3clk_A 137 PYTGRKRLAGYKKALK 152 (290)
T ss_dssp TTTHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH
Confidence 223334666665
No 92
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=38.23 E-value=71 Score=25.84 Aligned_cols=56 Identities=9% Similarity=0.085 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCcEEeec-cch--hhhhHHhhc-CCCCeech--------------------hchHhHHh--hCCCeEEEE
Q 046601 93 NLWSFLEKLGACYSVIP-CHI--YRIWHDEVS-CFVPFLHV--------------------TKSKPLEV--RSPLGIHVL 146 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIa-CNT--AH~~~del~-~~vPii~i--------------------~tv~~~~~--~~~~rVGVL 146 (233)
..++.|.+.++|.|++. .+. ....++.++ .++|++-+ ..++++.+ .|.++|+++
T Consensus 52 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i 131 (291)
T 3l49_A 52 SQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVF 131 (291)
T ss_dssp HHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCceEEEE
Confidence 34456677899999864 442 223355555 66776654 12345555 678899999
Q ss_pred cC
Q 046601 147 MT 148 (233)
Q Consensus 147 AT 148 (233)
+.
T Consensus 132 ~~ 133 (291)
T 3l49_A 132 NG 133 (291)
T ss_dssp CS
T ss_pred eC
Confidence 64
No 93
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=37.29 E-value=18 Score=30.94 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=40.1
Q ss_pred CCeEEEEc--CHHHHhhhhHHHHHcc-c--cCcchhhhHHHHHHhcCCcH---HHHHHHHHHHHHHhhCCCCEEEEcCCc
Q 046601 140 PLGIHVLM--TNGILTAGVLKLCYQI-K--ATMEHTLIPAVDALNRKDVE---GATNLLRRALQVLLARAVNIVILASND 211 (233)
Q Consensus 140 ~~rVGVLA--T~gTi~sglY~~~l~~-~--~~q~~~v~~~I~~vk~G~~~---~~~~~l~~~~~~l~~~gaD~vILGCTE 211 (233)
.+|||+|. |.-|+...+|+-. .. + ...-. .....+ ..-..+ .....+.+.++.|.+.|+|+++++||=
T Consensus 25 ~~rIGlI~p~s~~s~e~~~~~~~-~~~~~~~~~~~-~ar~~~--~~v~~~~l~~~~~~l~~aa~~L~~~g~d~IviaCnt 100 (273)
T 2xed_A 25 IRRIGLVVPSSNVTVETEMPALL-SRHPGAEFSFH-STRMRM--HTVSPEGLAAMNAQRERCVLEIADAAPEVILYACLV 100 (273)
T ss_dssp SEEEEEEEETTCCSHHHHHHHHH-TTCSSCCEEEE-EEEECC--CBCSHHHHHHHHTTHHHHHHHHHTTCCSEEEECCHH
T ss_pred CCEEEEEECCCchhHHHHHHHHh-cccccCCeEEE-EeCCcc--CCCCHHHHHHHHHHHHHHHHHHhhcCCCEEEECCCh
Confidence 45899997 7777877766543 21 1 11100 000000 000111 122345667788888899999999987
Q ss_pred cccC
Q 046601 212 ILDL 215 (233)
Q Consensus 212 lPll 215 (233)
-+++
T Consensus 101 a~~~ 104 (273)
T 2xed_A 101 AVMV 104 (273)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6555
No 94
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=36.56 E-value=1.3e+02 Score=24.77 Aligned_cols=69 Identities=7% Similarity=-0.118 Sum_probs=38.6
Q ss_pred HHHHHHHcCCcEEeeccchhhh---hHHhhc-CCCCeech----------------------hchHhHHhh--CCCeEEE
Q 046601 94 LWSFLEKLGACYSVIPCHIYRI---WHDEVS-CFVPFLHV----------------------TKSKPLEVR--SPLGIHV 145 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTAH~---~~del~-~~vPii~i----------------------~tv~~~~~~--~~~rVGV 145 (233)
.++.|.+.++|.|++....... .++.++ .++|+|-+ ..++++.+. |.++|++
T Consensus 49 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~ 128 (313)
T 2h3h_A 49 MLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVI 128 (313)
T ss_dssp HHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEE
T ss_pred HHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCCcceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3445566789988875443332 345554 55665543 122344445 7889999
Q ss_pred EcCHH-----HHhhhhHHHHHc
Q 046601 146 LMTNG-----ILTAGVLKLCYQ 162 (233)
Q Consensus 146 LAT~g-----Ti~sglY~~~l~ 162 (233)
++.+. ..+..-|++.++
T Consensus 129 i~~~~~~~~~~~R~~gf~~~l~ 150 (313)
T 2h3h_A 129 GTGSLTAMNSLQRIQGFKDAIK 150 (313)
T ss_dssp EESCSSCHHHHHHHHHHHHHHT
T ss_pred EECCCCCccHHHHHHHHHHHhc
Confidence 97541 223334666665
No 95
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=36.41 E-value=64 Score=27.94 Aligned_cols=32 Identities=13% Similarity=-0.099 Sum_probs=20.5
Q ss_pred HHHHc-CCcEEeeccchhhhhHHhhc-CCCCeech
Q 046601 97 FLEKL-GACYSVIPCHIYRIWHDEVS-CFVPFLHV 129 (233)
Q Consensus 97 ~Le~~-Gad~IVIaCNTAH~~~del~-~~vPii~i 129 (233)
.+.+. |+..+..+|++ ..+++.+. .++.++++
T Consensus 225 ~i~~~~g~~~i~~~~g~-~~~l~~l~~~g~d~~~~ 258 (338)
T 2eja_A 225 ELKDFSDTPVIYFFRGS-SSFIDLAVDYRADALSV 258 (338)
T ss_dssp HHHHHCCCCEEEEESSH-HHHHHHHTTSCCSEEEC
T ss_pred HHhhcCCCCEEEEcCCc-HHHHHHHHHcCCCEEEe
Confidence 44444 67777777777 55666666 66667766
No 96
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=36.31 E-value=72 Score=27.71 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhCCCCEEEEcCCc
Q 046601 189 LLRRALQVLLARAVNIVILASND 211 (233)
Q Consensus 189 ~l~~~~~~l~~~gaD~vILGCTE 211 (233)
.+...+..+++.++|+||+.|..
T Consensus 173 d~~~~l~~ik~~~~~vii~~~~~ 195 (389)
T 3o21_A 173 EFRRIIEEMDRRQEKRYLIDCEV 195 (389)
T ss_dssp HHHHHHHHHHTTTCCEEEEESCH
T ss_pred HHHHHHHHHHhCCCeEEEEECCH
Confidence 35667777888888988888863
No 97
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=36.24 E-value=62 Score=26.58 Aligned_cols=70 Identities=13% Similarity=-0.002 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCcEEeeccch-hhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 93 NLWSFLEKLGACYSVIPCHI-YRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNT-AH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
.+.+.|.+.++|.|++.... ....++.++ .++|+|-+ .+++++.+.|.++||+++.+
T Consensus 56 ~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (294)
T 3qk7_A 56 SLIHLVETRRVDALIVAHTQPEDFRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTD 135 (294)
T ss_dssp HHHHHHHHTCCSEEEECSCCSSCHHHHHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred HHHHHHHcCCCCEEEEeCCCCChHHHHHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 45567778899998775432 233455555 56665544 12345556678999999654
Q ss_pred H-----HHhhhhHHHHHc
Q 046601 150 G-----ILTAGVLKLCYQ 162 (233)
Q Consensus 150 g-----Ti~sglY~~~l~ 162 (233)
. .-+..-|.+.++
T Consensus 136 ~~~~~~~~R~~Gf~~al~ 153 (294)
T 3qk7_A 136 ARISYVDQRLQGYVQTMS 153 (294)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHH
Confidence 2 123334666665
No 98
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.55 E-value=77 Score=25.76 Aligned_cols=57 Identities=11% Similarity=-0.049 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCcEEeeccch-hhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 93 NLWSFLEKLGACYSVIPCHI-YRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNT-AH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
.+.+.|.+.++|.|++.... ....++.+. .++|++-+ ..++++.+.|.++|++++.+
T Consensus 55 ~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 134 (291)
T 3egc_A 55 EAVGQFFERRVDGLILAPSEGEHDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGS 134 (291)
T ss_dssp HHHHHHHHTTCSEEEECCCSSCCHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred HHHHHHHHCCCCEEEEeCCCCChHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 44556777899998775543 333456665 56666544 12344555678999999654
No 99
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=35.45 E-value=39 Score=29.39 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=12.2
Q ss_pred HHHHHHHhhCCCCEEEEcCC
Q 046601 191 RRALQVLLARAVNIVILASN 210 (233)
Q Consensus 191 ~~~~~~l~~~gaD~vILGCT 210 (233)
...+..+++.++|+|++++.
T Consensus 209 ~~~l~~i~~~~~d~v~~~~~ 228 (419)
T 3h5l_A 209 GPTLAKLRADPPAVIVVTHF 228 (419)
T ss_dssp HHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHhcCCCEEEEccc
Confidence 34445566667777777653
No 100
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=33.62 E-value=57 Score=28.74 Aligned_cols=27 Identities=4% Similarity=-0.094 Sum_probs=23.4
Q ss_pred CCcEEeeccchhhhhHHhhc-CCCCeech
Q 046601 102 GACYSVIPCHIYRIWHDEVS-CFVPFLHV 129 (233)
Q Consensus 102 Gad~IVIaCNTAH~~~del~-~~vPii~i 129 (233)
|+..+..+|++ ..+++.+. +++-++++
T Consensus 255 ~~p~i~~~~G~-~~~l~~l~~~g~d~i~~ 282 (367)
T 1r3s_A 255 PVPMIIFAKDG-HFALEELAQAGYEVVGL 282 (367)
T ss_dssp CCCEEEEETTC-GGGHHHHTTSSCSEEEC
T ss_pred CCCeEEEcCCc-HHHHHHHHhcCCCEEEe
Confidence 68999999999 77888888 88888888
No 101
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=33.46 E-value=63 Score=23.39 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCcEEeeccchhhhhHHhhc---CCCCeech--------hchHhHHhhC-CCeEEEEcC
Q 046601 92 ENLWSFLEKLGACYSVIPCHIYRIWHDEVS---CFVPFLHV--------TKSKPLEVRS-PLGIHVLMT 148 (233)
Q Consensus 92 ~~l~~~Le~~Gad~IVIaCNTAH~~~del~---~~vPii~i--------~tv~~~~~~~-~~rVGVLAT 148 (233)
..+.+.|++.|-..++..|++.....+.++ .++=++++ ..++.++... ..+|-+++.
T Consensus 29 ~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 97 (152)
T 3eul_A 29 EGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISA 97 (152)
T ss_dssp HHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred HHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEc
Confidence 344457788886666656666666655554 44444443 3445555443 335555554
No 102
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=32.84 E-value=99 Score=26.20 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCcEEeeccch-hhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 93 NLWSFLEKLGACYSVIPCHI-YRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNT-AH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
..++.|.+.++|.+++.... ....++.++ .++|++-+ .+++++.+.|.++||+++.+
T Consensus 117 ~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~ 196 (355)
T 3e3m_A 117 QLVETMLRRRPEAMVLSYDGHTEQTIRLLQRASIPIVEIWEKPAHPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEK 196 (355)
T ss_dssp HHHHHHHHTCCSEEEEECSCCCHHHHHHHHHCCSCEEEESSCCSSCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhCCCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccC
Confidence 34456677899998875432 223355555 56665532 22345556678999999753
Q ss_pred ------HHHhhhhHHHHHc
Q 046601 150 ------GILTAGVLKLCYQ 162 (233)
Q Consensus 150 ------gTi~sglY~~~l~ 162 (233)
..-+..-|.+.++
T Consensus 197 ~~~~~~~~~R~~Gf~~al~ 215 (355)
T 3e3m_A 197 DDDWTRGAARRAGFKRAMR 215 (355)
T ss_dssp SCTTSHHHHHHHHHHHHHH
T ss_pred cccChhHHHHHHHHHHHHH
Confidence 2233444666665
No 103
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=32.11 E-value=1e+02 Score=25.78 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=33.2
Q ss_pred HHHHHHHcCCcEEeeccchh-hhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 94 LWSFLEKLGACYSVIPCHIY-RIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTA-H~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
..+.|.+.++|.|++..... ...+++++ .++|++-+ .+++++.+.|.++||+++.+
T Consensus 111 ~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 189 (332)
T 2o20_A 111 VLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGS 189 (332)
T ss_dssp HHHHHHHTTCSEEEECSSCCCHHHHHHHHHHCCCEEEESCCCTTSCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSC
T ss_pred HHHHHHhCCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEccccCCCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 44566678999988754322 23344454 44554432 22344555678999999764
No 104
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=31.58 E-value=99 Score=25.19 Aligned_cols=57 Identities=5% Similarity=-0.116 Sum_probs=34.7
Q ss_pred HHHHHHHcCCcEEeeccchhh---hhHHhhc-CCCCeech----------------------hchHhHHhh--CCCeEEE
Q 046601 94 LWSFLEKLGACYSVIPCHIYR---IWHDEVS-CFVPFLHV----------------------TKSKPLEVR--SPLGIHV 145 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTAH---~~~del~-~~vPii~i----------------------~tv~~~~~~--~~~rVGV 145 (233)
.++.|.+.++|.|++...... ..+++++ .++|++-+ ..++++.+. |.++|++
T Consensus 53 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~ 132 (305)
T 3g1w_A 53 VLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAV 132 (305)
T ss_dssp HHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 344566679999887544333 2345554 56665544 123455556 7889999
Q ss_pred EcCHH
Q 046601 146 LMTNG 150 (233)
Q Consensus 146 LAT~g 150 (233)
++.+.
T Consensus 133 i~~~~ 137 (305)
T 3g1w_A 133 ITLPN 137 (305)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 98653
No 105
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=31.01 E-value=1.5e+02 Score=23.54 Aligned_cols=69 Identities=10% Similarity=-0.028 Sum_probs=39.1
Q ss_pred HHHHHHHcC-CcEEeeccchh---hhhHHhhc-CCCCeech----------------------hchHhHHhh----CCCe
Q 046601 94 LWSFLEKLG-ACYSVIPCHIY---RIWHDEVS-CFVPFLHV----------------------TKSKPLEVR----SPLG 142 (233)
Q Consensus 94 l~~~Le~~G-ad~IVIaCNTA---H~~~del~-~~vPii~i----------------------~tv~~~~~~----~~~r 142 (233)
.++.|.+.+ +|.|++..... ...++.++ .++|++-+ ..++++.+. |.++
T Consensus 50 ~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~ 129 (276)
T 3ksm_A 50 ILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKERN 129 (276)
T ss_dssp HHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhcCcCCCce
Confidence 344556667 99998765322 22345554 55555433 123455566 7889
Q ss_pred EEEEcCH-----HHHhhhhHHHHHc
Q 046601 143 IHVLMTN-----GILTAGVLKLCYQ 162 (233)
Q Consensus 143 VGVLAT~-----gTi~sglY~~~l~ 162 (233)
|++++.+ ..-+..-|++.++
T Consensus 130 i~~i~~~~~~~~~~~R~~gf~~~l~ 154 (276)
T 3ksm_A 130 IALLRLRAGNASTDQREQGFLDVLR 154 (276)
T ss_dssp EEECBCCTTCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHH
Confidence 9999743 1223334666665
No 106
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=30.91 E-value=35 Score=28.13 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcEEeeccchhhhhHHhhc-CCCCeech------h----------------chHhHHhhCCCeEEEEc
Q 046601 92 ENLWSFLEKLGACYSVIPCHIYRIWHDEVS-CFVPFLHV------T----------------KSKPLEVRSPLGIHVLM 147 (233)
Q Consensus 92 ~~l~~~Le~~Gad~IVIaCNTAH~~~del~-~~vPii~i------~----------------tv~~~~~~~~~rVGVLA 147 (233)
..+.+.|.+.++|.|++........++.++ .++|+|-+ . +++++.+.|.++||+++
T Consensus 60 ~~~~~~l~~~~vdGiIi~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~ 138 (301)
T 3miz_A 60 VEIWKMFQSHRIDGVLYVTMYRRIVDPESGDVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYLLERGHRRIGYIR 138 (301)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEEEECCCCCTTCCCCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred HHHHHHHHhCCCCEEEEecCCccHHHHHHHhCCCCEEEECCCCCCCCCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEe
No 107
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=30.76 E-value=1.4e+02 Score=25.29 Aligned_cols=57 Identities=16% Similarity=0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCcEEeeccchh-hhhHHhhc-CCCCeech----------------------hchHhHHhhCCCeEEEEcC
Q 046601 93 NLWSFLEKLGACYSVIPCHIY-RIWHDEVS-CFVPFLHV----------------------TKSKPLEVRSPLGIHVLMT 148 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTA-H~~~del~-~~vPii~i----------------------~tv~~~~~~~~~rVGVLAT 148 (233)
..++.|.+.++|.|++..... ...++.++ .++|++-+ .+++++.+.|.++||+++.
T Consensus 113 ~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 192 (348)
T 3bil_A 113 GSLEFLTSHGVDGIICVPNEECANQLEDLQKQGMPVVLVDRELPGDSTIPTATSNPQPGIAAAVELLAHNNALPIGYLSG 192 (348)
T ss_dssp HHHHHHHHTTCSCEEECCCGGGHHHHHHHHHC-CCEEEESSCCSCC-CCCEEEEECHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred HHHHHHHhCCCCEEEEeCCCCChHHHHHHHhCCCCEEEEcccCCCCCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 344566678999887754332 23345554 45554433 1234455567899999975
Q ss_pred H
Q 046601 149 N 149 (233)
Q Consensus 149 ~ 149 (233)
+
T Consensus 193 ~ 193 (348)
T 3bil_A 193 P 193 (348)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=29.96 E-value=1.1e+02 Score=26.63 Aligned_cols=29 Identities=3% Similarity=-0.191 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHH-cCCcEEeeccchhhh
Q 046601 87 HALIAENLWSFLEK-LGACYSVIPCHIYRI 115 (233)
Q Consensus 87 ~~~I~~~l~~~Le~-~Gad~IVIaCNTAH~ 115 (233)
++.......+.+.+ .++.+|+=|.++...
T Consensus 69 ~~~a~~~a~~li~~~~~v~aviG~~~S~~~ 98 (433)
T 4f11_A 69 NAKGLKAFYDAIKYGPNHLMVFGGVCPSVT 98 (433)
T ss_dssp HHHHHHHHHHHHHHSCCCSEEEECCSHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCcchHH
Confidence 33444444445554 377777766555444
No 109
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=29.95 E-value=1.6e+02 Score=23.80 Aligned_cols=56 Identities=7% Similarity=-0.079 Sum_probs=30.6
Q ss_pred HHHHHHHcCCcEEeeccc-hhhhhHHhhcCCCCe--------------ech-------hchHhHHhhCCCeEEEEcCH
Q 046601 94 LWSFLEKLGACYSVIPCH-IYRIWHDEVSCFVPF--------------LHV-------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCN-TAH~~~del~~~vPi--------------i~i-------~tv~~~~~~~~~rVGVLAT~ 149 (233)
.++.|.+.++|.|++... .....++.++.++|+ +.. .+++++.+.|.++|++++.+
T Consensus 56 ~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 133 (285)
T 3c3k_A 56 CLTLLSGKMVDGVITMDALSELPELQNIIGAFPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLVKSGKKRIALINHD 133 (285)
T ss_dssp HTHHHHTTCCSEEEECCCGGGHHHHHHHHTTSSEEEESSCCTTSSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHhCCCCEEEEeCCCCChHHHHHHhcCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 344566778998877543 222333333222333 332 22344555678999999754
No 110
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=29.78 E-value=92 Score=27.27 Aligned_cols=67 Identities=6% Similarity=-0.096 Sum_probs=37.0
Q ss_pred HHHHHHcCCcEEeeccchhhhhHHhhc-CCCCeech-------------------------hchHhHHhhCCCeEEEEcC
Q 046601 95 WSFLEKLGACYSVIPCHIYRIWHDEVS-CFVPFLHV-------------------------TKSKPLEVRSPLGIHVLMT 148 (233)
Q Consensus 95 ~~~Le~~Gad~IVIaCNTAH~~~del~-~~vPii~i-------------------------~tv~~~~~~~~~rVGVLAT 148 (233)
.+.|.+.++|.|++..++ ...++.++ .++|+|-+ .+++++.+.|.++||+++.
T Consensus 69 i~~l~~~~vDGiIi~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~ 147 (412)
T 4fe7_A 69 IDKIKDWLGDGVIADFDD-KQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGL 147 (412)
T ss_dssp ------CCCSEEEEETTC-HHHHHHHTTCCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred hhhHhcCCCCEEEEecCC-hHHHHHHhhCCCCEEEecCCccccccCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecc
Confidence 456777899999884322 22345555 56776643 1234555667899999986
Q ss_pred HHH-------HhhhhHHHHHc
Q 046601 149 NGI-------LTAGVLKLCYQ 162 (233)
Q Consensus 149 ~gT-------i~sglY~~~l~ 162 (233)
+.. -+..-|.+.++
T Consensus 148 ~~~~~~~~~~~R~~Gf~~al~ 168 (412)
T 4fe7_A 148 PESSGKRWATEREYAFRQLVA 168 (412)
T ss_dssp CTTSCCHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHHHHHHHHHH
Confidence 532 23334666665
No 111
>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*
Probab=29.09 E-value=16 Score=29.25 Aligned_cols=13 Identities=46% Similarity=0.424 Sum_probs=10.2
Q ss_pred eccccCCCccchh
Q 046601 12 VGSTLGSLSCCRS 24 (233)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (233)
.||..||||||.|
T Consensus 107 ~gS~agSLSsl~S 119 (151)
T 1i7w_B 107 SGSEAASLSSLNS 119 (151)
T ss_dssp CCCCCTTCCCC--
T ss_pred CCCccCccccccc
Confidence 5899999999976
No 112
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=28.12 E-value=43 Score=28.26 Aligned_cols=37 Identities=5% Similarity=-0.089 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCcEEeeccc-------hhhhhHHhhc-CCCC
Q 046601 89 LIAENLWSFLEKLGACYSVIPCH-------IYRIWHDEVS-CFVP 125 (233)
Q Consensus 89 ~I~~~l~~~Le~~Gad~IVIaCN-------TAH~~~del~-~~vP 125 (233)
.-+..+.+++++.+++=|++|.| ||||..+.++ .++.
T Consensus 136 L~i~~L~~Ri~~~~v~EVIlAtnpTvEGeaTa~Yi~~~Lk~~~vk 180 (212)
T 3vdp_A 136 IRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVK 180 (212)
T ss_dssp TTHHHHHHHHHHSCCSEEEECCCSSHHHHHHHHHHHHHHTTTTCE
T ss_pred cCHHHHHHHHhcCCCcEEEEECCCCccHHHHHHHHHHHhhhcCCC
Confidence 34556777999999999999999 7888877777 4443
No 113
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=27.07 E-value=1e+02 Score=26.95 Aligned_cols=70 Identities=9% Similarity=-0.092 Sum_probs=38.5
Q ss_pred CCCCcchhhh--hhHHHHHHHHHHHHHHcCCcEEeecc-chhhhhHHhhc--CC--CCeech------hchHhHHhhCCC
Q 046601 75 SLNGRSDLLK--LEHALIAENLWSFLEKLGACYSVIPC-HIYRIWHDEVS--CF--VPFLHV------TKSKPLEVRSPL 141 (233)
Q Consensus 75 ~~~~~~~~~~--~~~~~I~~~l~~~Le~~Gad~IVIaC-NTAH~~~del~--~~--vPii~i------~tv~~~~~~~~~ 141 (233)
-+++|.+..- .+-+++++... .++.+|||+|++.| -+...-+.++. ++ +|++-. .+.+++.+.|.+
T Consensus 155 ~i~aRtda~~a~~g~~~ai~Ra~-ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~~~eL~~lGv~ 233 (295)
T 1s2w_A 155 CIVARVEAFIAGWGLDEALKRAE-AYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTKYYKTPTDHFRDMGVS 233 (295)
T ss_dssp EEEEEECTTTTTCCHHHHHHHHH-HHHHTTCSEEEECCCSSSSHHHHHHHHHHTTCSCEEECCSTTTTSCHHHHHHHTCC
T ss_pred EEEEeehHHhccccHHHHHHHHH-HHHHcCCCEEEEcCCCCCHHHHHHHHHHcCCCCCEEEeCCCCCCCCHHHHHHcCCc
Confidence 4677766542 12222222221 67789999999987 33122233333 34 887633 345677777766
Q ss_pred eEEE
Q 046601 142 GIHV 145 (233)
Q Consensus 142 rVGV 145 (233)
+|-+
T Consensus 234 ~v~~ 237 (295)
T 1s2w_A 234 MVIW 237 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 114
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=26.61 E-value=9.4 Score=33.45 Aligned_cols=129 Identities=7% Similarity=-0.001 Sum_probs=73.9
Q ss_pred CCcchhhhhhHHHHHHHHHH-HHHHcCCcEEeeccchhhhhHHhhc--CCCCeech---hc-hHhHHhhCCCeEEEEcCH
Q 046601 77 NGRSDLLKLEHALIAENLWS-FLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV---TK-SKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 77 ~~~~~~~~~~~~~I~~~l~~-~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i---~t-v~~~~~~~~~rVGVLAT~ 149 (233)
-.|.+...++.+.|...+.. .|+.+ +|.++.=- .| .++++ +++|+-|+ +. +++++......|.=..+.
T Consensus 89 YaRQDr~~~~~e~isak~vA~ll~~~-~d~vit~D--lH--~~~iq~ff~~pvd~l~~~~~la~~i~~~~~~vVV~pd~G 163 (286)
T 3lrt_A 89 YARQHQRYKNGEPISSQILTEIYSSY-SNSIATVD--IH--DEKTLSYSKVKFSDLHANDAIVRYYKNVDVDYVVSPDDG 163 (286)
T ss_dssp TTTCCSCSSTTCCCHHHHHHHHHHHT-CSEEEEES--CS--CGGGGGGCSSEEEEECCHHHHHHHHTTSCCSEEEESSSS
T ss_pred cccCcccCCCCCcccHHHHHHHHHHH-hCeEEEec--CC--hHHHhhhcCCcEEEeecHHHHHHHHHhcCCCEEEEECCC
Confidence 34666666666667677766 88888 99886432 23 35666 78999998 22 233433122333334455
Q ss_pred HHHhhhhHHHHHc------cc----cCcchhhhHHHHHHhcCC----cH---HHHHHHHHHHHHHhhCCCCEEEEcCCcc
Q 046601 150 GILTAGVLKLCYQ------IK----ATMEHTLIPAVDALNRKD----VE---GATNLLRRALQVLLARAVNIVILASNDI 212 (233)
Q Consensus 150 gTi~sglY~~~l~------~~----~~q~~~v~~~I~~vk~G~----~~---~~~~~l~~~~~~l~~~gaD~vILGCTEl 212 (233)
|......+.+.+. +. ....+ ++.....++ |. .+ ..-..+.++.+.+.++|+..+...|||=
T Consensus 164 g~~~A~~lA~~L~~p~~~i~K~r~~~g~v~-i~~~~~dv~-gk~vliVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~th~ 241 (286)
T 3lrt_A 164 GLARVADISAKLGKKHFFIEKKRIDDRTVE-MKVPNVDVN-GKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHG 241 (286)
T ss_dssp SHHHHHHHHHHHTCEEEEEEEEEETTEEEE-EEESCCCCT-TCEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred ccHHHHHHHHHhCCCeEEEeeeecCCCcEE-EeeccccCC-cCEEEEEeccccccHHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 6666666777765 11 11111 111111122 22 01 1235677888889999999999999984
No 115
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=26.38 E-value=1.3e+02 Score=24.01 Aligned_cols=68 Identities=12% Similarity=-0.018 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCcEEeeccchhhhhHHhhcCCCCe---------------ech-------hchHhHHhhCCCeEEEEcCHH
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIWHDEVSCFVPF---------------LHV-------TKSKPLEVRSPLGIHVLMTNG 150 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~~del~~~vPi---------------i~i-------~tv~~~~~~~~~rVGVLAT~g 150 (233)
..++.|.+.++|.|+++.+.....++. .++|+ |+. .+++++.++|.++|++++.+.
T Consensus 51 ~~~~~l~~~~vdgiI~~~~~~~~~~~~--~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 128 (280)
T 3gyb_A 51 DPITSALSMRPDGIIIAQDIPDFTVPD--SLPPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDLGHTHIAHLRVGS 128 (280)
T ss_dssp CHHHHHHTTCCSEEEEESCC----------CCCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHTTCCSEEEECCSS
T ss_pred HHHHHHHhCCCCEEEecCCCChhhHhh--cCCCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHCCCCeEEEEeCCC
Confidence 345566778899888665544333333 23333 333 233456666789999998765
Q ss_pred HH---hhhhHHHHHc
Q 046601 151 IL---TAGVLKLCYQ 162 (233)
Q Consensus 151 Ti---~sglY~~~l~ 162 (233)
.. +..-|.+.++
T Consensus 129 ~~~~~R~~gf~~~l~ 143 (280)
T 3gyb_A 129 GAGLRRFESFEATMR 143 (280)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 43 2223555554
No 116
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=25.84 E-value=2.8e+02 Score=22.96 Aligned_cols=69 Identities=14% Similarity=-0.005 Sum_probs=39.3
Q ss_pred HHHHHHHcCCcEEeeccchh-hh-hHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 94 LWSFLEKLGACYSVIPCHIY-RI-WHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTA-H~-~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
..+.|.+.++|.|++..... .. +.+.++ .++|++-+ .+++++.+.|.++||+++.+
T Consensus 111 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 190 (338)
T 3dbi_A 111 AIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGS 190 (338)
T ss_dssp HHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred HHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 44567778999998865332 22 233333 45665433 13345556688999999653
Q ss_pred H-----HHhhhhHHHHHc
Q 046601 150 G-----ILTAGVLKLCYQ 162 (233)
Q Consensus 150 g-----Ti~sglY~~~l~ 162 (233)
. .-+..-|.+.++
T Consensus 191 ~~~~~~~~R~~Gf~~al~ 208 (338)
T 3dbi_A 191 MDSPTSIERLAGYKDALA 208 (338)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 2 122233666665
No 117
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=25.81 E-value=1.8e+02 Score=24.18 Aligned_cols=30 Identities=17% Similarity=-0.053 Sum_probs=17.4
Q ss_pred HhHHh--hCCCeEEEEcCHH-----HHhhhhHHHHHc
Q 046601 133 KPLEV--RSPLGIHVLMTNG-----ILTAGVLKLCYQ 162 (233)
Q Consensus 133 ~~~~~--~~~~rVGVLAT~g-----Ti~sglY~~~l~ 162 (233)
+++.+ .|.++|++++.+. ..+..-|.+.++
T Consensus 127 ~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~ 163 (332)
T 2rjo_A 127 TQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALK 163 (332)
T ss_dssp HHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHH
Confidence 44555 5788999997541 122233666665
No 118
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=25.44 E-value=1e+02 Score=25.88 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCcEEeeccchh-hhhHHhhc-CCCCeech--------------------hchHhHHhhCCCeEEEEcCH
Q 046601 93 NLWSFLEKLGACYSVIPCHIY-RIWHDEVS-CFVPFLHV--------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTA-H~~~del~-~~vPii~i--------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
..++.|.+.++|.|++..... ...++.++ .++|++-+ .+++++.+.|.++||+++.+
T Consensus 109 ~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 187 (339)
T 3h5o_A 109 QLLRAYLQHRPDGVLITGLSHAEPFERILSQHALPVVYMMDLADDGRCCVGFSQEDAGAAITRHLLSRGKRRIGFLGAQ 187 (339)
T ss_dssp HHHHHHHTTCCSEEEEECSCCCTTHHHHHHHTTCCEEEEESCCSSSCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred HHHHHHHcCCCCEEEEeCCCCCHHHHHHHhcCCCCEEEEeecCCCCCeEEEECHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 344567778999997765332 23355555 66776543 22345666788999999754
No 119
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=24.43 E-value=85 Score=29.21 Aligned_cols=66 Identities=14% Similarity=-0.085 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCcEE-eeccchhhhhHHhhc-CCCCeech--hch-Hh-----HHhhCCCeEEEEcCHHHHhhhh
Q 046601 90 IAENLWSFLEKLGACYS-VIPCHIYRIWHDEVS-CFVPFLHV--TKS-KP-----LEVRSPLGIHVLMTNGILTAGV 156 (233)
Q Consensus 90 I~~~l~~~Le~~Gad~I-VIaCNTAH~~~del~-~~vPii~i--~tv-~~-----~~~~~~~rVGVLAT~gTi~sgl 156 (233)
..+.+.+.|++.|++.+ .+|..+.-.+++.+. .++.++.. +.. .. ++.. .+...++.|.|+=...+
T Consensus 6 ~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~ 81 (563)
T 2uz1_A 6 GGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDHDVPIIDTRHEAAAGHAAEGYARAG-AKLGVALVTAGGGFTNA 81 (563)
T ss_dssp HHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHHTCCEEECSSHHHHHHHHHHHHHHH-TSCEEEEECTTHHHHTT
T ss_pred HHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhcCCcEEeeCCHHHHHHHHHHHHHHh-CCCEEEEEccCccHHHH
Confidence 34578889999999987 778877777888887 55777766 211 11 1222 45566778887644333
No 120
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=24.28 E-value=46 Score=26.81 Aligned_cols=56 Identities=7% Similarity=-0.140 Sum_probs=27.6
Q ss_pred HHHHHHHcCCcEEeeccchh-hhhHHhhc-CCCCeech-------------------hchHhHHhhCCCeEEEEcCH
Q 046601 94 LWSFLEKLGACYSVIPCHIY-RIWHDEVS-CFVPFLHV-------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTA-H~~~del~-~~vPii~i-------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
..+.|.+.++|.+++..... ...++.++ .++|++-+ ..++++.+.|.+||++++.+
T Consensus 47 ~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~ 123 (276)
T 2h0a_A 47 LENTTLAYLTDGLILASYDLTERFEEGRLPTERPVVLVDAQNPRYDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEE 123 (276)
T ss_dssp -------CCCSEEEEESCCCC------CCSCSSCEEEESSCCTTSEEEEECSHHHHHHHHHHHTTSSSCEEEEEECC
T ss_pred HHHHHHhCCCCEEEEecCCCCHHHHHHHhhcCCCEEEEeccCCCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 44456678999987754332 23445555 56776543 12244445578899999765
No 121
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=24.03 E-value=29 Score=30.67 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEeeccchhhhhHHhhc--CCCCeech-h------c--hHh---HHh-hC---CCeEEEEcC
Q 046601 87 HALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV-T------K--SKP---LEV-RS---PLGIHVLMT 148 (233)
Q Consensus 87 ~~~I~~~l~~~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i-~------t--v~~---~~~-~~---~~rVGVLAT 148 (233)
..|-+....+-|.+.|+|+|||=... |-..+++. .++||||. - + +.. +.+ .| +.+|+++|-
T Consensus 77 kgEsl~DTarvLs~~~~D~iviR~~~-~~~~~~la~~~~vPVINagdg~~~HPtQaLaDl~Ti~e~~g~l~glkva~vGD 155 (304)
T 3r7f_A 77 KGETLYDTIRTLESIGVDVCVIRHSE-DEYYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGD 155 (304)
T ss_dssp SSSCHHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHCSSCEEESCCTTSCCHHHHHHHHHHHHHHHSCCTTCEEEEESC
T ss_pred CCCCHHHHHHHHHHhcCCEEEEecCC-hhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCCCCCEEEEEcC
Confidence 34445566679999999999999763 45566666 88999997 1 1 111 222 12 569999986
Q ss_pred H---HHHhhhhH
Q 046601 149 N---GILTAGVL 157 (233)
Q Consensus 149 ~---gTi~sglY 157 (233)
- .+.+|-++
T Consensus 156 ~~~~rva~Sl~~ 167 (304)
T 3r7f_A 156 IKHSRVARSNAE 167 (304)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCcchHHHHHH
Confidence 3 36665543
No 122
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=23.89 E-value=1.6e+02 Score=24.42 Aligned_cols=59 Identities=15% Similarity=-0.006 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHcCCcEEeeccchhhhhHHhhc--CCCCeech-------------hc---hHhHHhhCCCeEEEEcC
Q 046601 87 HALIAENLWSFLEKLGACYSVIPCHIYRIWHDEVS--CFVPFLHV-------------TK---SKPLEVRSPLGIHVLMT 148 (233)
Q Consensus 87 ~~~I~~~l~~~Le~~Gad~IVIaCNTAH~~~del~--~~vPii~i-------------~t---v~~~~~~~~~rVGVLAT 148 (233)
..+....|.+..++.|+..|-+ |+. ..+.+++ +++|++++ ++ ++.+...|...|.+.+|
T Consensus 34 ~~~~~~~~A~a~~~~Ga~~i~~--~~~-~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~ 110 (229)
T 3q58_A 34 KPEIVAAMAQAAASAGAVAVRI--EGI-ENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDAS 110 (229)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEE--ESH-HHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECC
T ss_pred CcchHHHHHHHHHHCCCcEEEE--CCH-HHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECcc
Confidence 3456667777889999999875 332 2356676 89998743 22 34455567778877776
No 123
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=23.87 E-value=88 Score=26.40 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCcEEeeccchhhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 93 NLWSFLEKLGACYSVIPCHIYRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNTAH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
...+.|.+.++|.|++... ++.+. .++|++-+ .+++++.+.|.++||+++.+
T Consensus 110 ~~~~~l~~~~vdGiIi~~~-----~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 183 (333)
T 3jvd_A 110 VVMESLISIQAAGIIHVPV-----VGSIAPEGIPMVQLTRGELGPGFPRVLCDDEAGFFQLTESVLGGSGMNIAALVGE 183 (333)
T ss_dssp HHHHHHHHHTCSEEEECCC-----TTCCC-CCSCEEEECC----CCSCEEEECHHHHHHHHHHHHCCSSSCEEEEEESC
T ss_pred HHHHHHHhCCCCEEEEcch-----HHHHhhCCCCEEEECccCCCCCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 4455677789999988765 33333 45555433 12234445578999999765
No 124
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=23.41 E-value=2.3e+02 Score=22.96 Aligned_cols=69 Identities=10% Similarity=-0.145 Sum_probs=38.3
Q ss_pred HHHHHHHcCCcEEeeccchhh---hhHHhhc-CCCCeech-------------------------hchHhHHhhC--CCe
Q 046601 94 LWSFLEKLGACYSVIPCHIYR---IWHDEVS-CFVPFLHV-------------------------TKSKPLEVRS--PLG 142 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTAH---~~~del~-~~vPii~i-------------------------~tv~~~~~~~--~~r 142 (233)
.++.|.+.++|.|++...... ..+++++ .++|++-+ .+++++.+.+ .++
T Consensus 53 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~ 132 (297)
T 3rot_A 53 FIESALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKR 132 (297)
T ss_dssp HHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcCCCce
Confidence 444666789998887443322 3345554 45555443 1224455566 789
Q ss_pred EEEEcCHH-----HHhhhhHHHHHc
Q 046601 143 IHVLMTNG-----ILTAGVLKLCYQ 162 (233)
Q Consensus 143 VGVLAT~g-----Ti~sglY~~~l~ 162 (233)
|++++.+. ..+..-|++.++
T Consensus 133 i~~i~g~~~~~~~~~R~~Gf~~~l~ 157 (297)
T 3rot_A 133 ALVLNPQPGHIGLEKRAYGIKTILQ 157 (297)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHHHHH
Confidence 99995331 123334666665
No 125
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=23.10 E-value=88 Score=22.77 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=30.5
Q ss_pred HHHHHHHcCCcEEeeccchhhhhHHhhc-----CCCCeec-hhchHhH
Q 046601 94 LWSFLEKLGACYSVIPCHIYRIWHDEVS-----CFVPFLH-VTKSKPL 135 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTAH~~~del~-----~~vPii~-i~tv~~~ 135 (233)
..+.+++-.+.++++|-|..-.....+. .++|+++ ..+-+++
T Consensus 30 v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eL 77 (105)
T 3u5e_c 30 TVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNEL 77 (105)
T ss_dssp HHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHH
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHH
Confidence 3447777889999999999765555554 5899996 3555555
No 126
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=22.82 E-value=1.1e+02 Score=28.06 Aligned_cols=64 Identities=6% Similarity=-0.022 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCcEE-eeccchhhhhHHhhcCCCCeech--hchH-h-----HHhhCCCeEEEEcCHHHHhhh
Q 046601 91 AENLWSFLEKLGACYS-VIPCHIYRIWHDEVSCFVPFLHV--TKSK-P-----LEVRSPLGIHVLMTNGILTAG 155 (233)
Q Consensus 91 ~~~l~~~Le~~Gad~I-VIaCNTAH~~~del~~~vPii~i--~tv~-~-----~~~~~~~rVGVLAT~gTi~sg 155 (233)
.+.+.+.|++.|++.+ .+|....-.+++.+..++.++.. +... . ++.+ .+...++.|.|+=-..
T Consensus 5 a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~i~~i~~~~E~~Aa~~A~Gyar~t-g~~~v~~~tsGpG~~N 77 (528)
T 1q6z_A 5 HGTTYELLRRQGIDTVFGNPGSNALPFLKDFPEDFRYILALQEACVVGIADGYAQAS-RKPAFINLHSAAGTGN 77 (528)
T ss_dssp HHHHHHHHHHTTCCEEEECCCGGGHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHHH-TSCEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCcchHHHHHHHhhcCcEEEECcHHHHHHHHHHHHHHh-CCCEEEEEcCChHHHH
Confidence 4578889999999988 67887777788877534556655 2111 1 1222 4445566887764433
No 127
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=22.76 E-value=2.2e+02 Score=23.89 Aligned_cols=56 Identities=16% Similarity=-0.059 Sum_probs=31.7
Q ss_pred HHHHHHHcCCcEEeec-cc-hhhhhHHhhc-CCCCeech--------------------hchHhHHhhCCCeEEEEcCH
Q 046601 94 LWSFLEKLGACYSVIP-CH-IYRIWHDEVS-CFVPFLHV--------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 94 l~~~Le~~Gad~IVIa-CN-TAH~~~del~-~~vPii~i--------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
.++.|.+.++|.|++. .. ........+. .++|++-+ .+++++.+.|.++||+++.+
T Consensus 110 ~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~iPvV~i~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~ 188 (349)
T 1jye_A 110 AVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGP 188 (349)
T ss_dssp HHHHHHTTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSCTTSSSCEEEECHHHHHHHHHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHHCCCCEEEEecCCCChhHHHHHHhhCCCCEEEEcccCCCCCCEEEEchHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3445667899988874 32 2222222232 44555433 12345556688999999754
No 128
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=22.63 E-value=89 Score=28.48 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=25.7
Q ss_pred HHHHcCCcEEeeccchhhhh--HHhhc--CCCCee
Q 046601 97 FLEKLGACYSVIPCHIYRIW--HDEVS--CFVPFL 127 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~--~del~--~~vPii 127 (233)
.|+++|||.|=+++++.-.. +.+++ +++|++
T Consensus 54 ~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlv 88 (366)
T 3noy_A 54 RLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVI 88 (366)
T ss_dssp HHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEE
Confidence 89999999999999885553 67777 899984
No 129
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=22.31 E-value=1.1e+02 Score=22.23 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=31.1
Q ss_pred HHHHHHHcCCcEEeeccchhhhhHHhhc-----CCCCeec-hhchHhH
Q 046601 94 LWSFLEKLGACYSVIPCHIYRIWHDEVS-----CFVPFLH-VTKSKPL 135 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTAH~~~del~-----~~vPii~-i~tv~~~ 135 (233)
..+.+++-.+.++++|-|.......++. .++|+++ ..+-+++
T Consensus 30 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eL 77 (104)
T 4a18_G 30 TIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVEL 77 (104)
T ss_dssp HHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHH
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHHH
Confidence 3447778889999999999876656555 4899996 4555555
No 130
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=22.16 E-value=1.1e+02 Score=28.73 Aligned_cols=70 Identities=13% Similarity=-0.032 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCcEE-eeccchhhhhHHhhc--CCCCeech--hch-Hh-----HHhhCCCeEEEEcCHHHHhhhhHH
Q 046601 90 IAENLWSFLEKLGACYS-VIPCHIYRIWHDEVS--CFVPFLHV--TKS-KP-----LEVRSPLGIHVLMTNGILTAGVLK 158 (233)
Q Consensus 90 I~~~l~~~Le~~Gad~I-VIaCNTAH~~~del~--~~vPii~i--~tv-~~-----~~~~~~~rVGVLAT~gTi~sglY~ 158 (233)
..+.+.+.|++.|++.+ .+|....-.+++.+. -.+.++.. +.. .. ++.. .+...++.|.|+=....+.
T Consensus 14 ~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~ 92 (590)
T 1ybh_A 14 GADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSS-GKPGICIATSGPGATNLVS 92 (590)
T ss_dssp HHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHH-SSCEEEEECTTHHHHTTHH
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHH-CCCEEEEeccCchHHHHHH
Confidence 45688889999999988 677777777888887 35777766 211 11 2222 4556668888876555544
Q ss_pred HH
Q 046601 159 LC 160 (233)
Q Consensus 159 ~~ 160 (233)
-.
T Consensus 93 gv 94 (590)
T 1ybh_A 93 GL 94 (590)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 131
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=22.14 E-value=62 Score=22.55 Aligned_cols=42 Identities=17% Similarity=-0.008 Sum_probs=29.6
Q ss_pred HHHHHHHcCCcEEeeccchhhhhHHhhc-----CCCCeechhchHhH
Q 046601 94 LWSFLEKLGACYSVIPCHIYRIWHDEVS-----CFVPFLHVTKSKPL 135 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTAH~~~del~-----~~vPii~i~tv~~~ 135 (233)
..+.+++..+.+++||-|........+. .++|++.+.+-+++
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 19 TVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKL 65 (82)
T ss_dssp HHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHH
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 3346677789999999998775544444 68999988433443
No 132
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=21.89 E-value=90 Score=26.09 Aligned_cols=56 Identities=11% Similarity=-0.035 Sum_probs=33.4
Q ss_pred HHHHHHHcCCcEEeeccch-hhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 94 LWSFLEKLGACYSVIPCHI-YRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNT-AH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
..+.|.+.++|.|++.... ....++.++ .++|++-+ .+++++.+.|.++||+++.+
T Consensus 108 ~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 186 (332)
T 2hsg_A 108 LLNNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGT 186 (332)
T ss_dssp HHHHTSCCSSCCEEECCSSCCHHHHHHHTTSSSCEEEESCCCSCTTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESC
T ss_pred HHHHHHhCCCcEEEEecCCCCHHHHHHHHhCCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3445556789988775432 223455555 55665533 12344555678999999765
No 133
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=21.58 E-value=2.6e+02 Score=24.48 Aligned_cols=70 Identities=13% Similarity=-0.004 Sum_probs=41.3
Q ss_pred CCCcchhhhhhHHHHHHHHHH--HHHHcCCcEEeeccchhhhhHHhhc--C-CCCee-ch--------hchHhHHhhCCC
Q 046601 76 LNGRSDLLKLEHALIAENLWS--FLEKLGACYSVIPCHIYRIWHDEVS--C-FVPFL-HV--------TKSKPLEVRSPL 141 (233)
Q Consensus 76 ~~~~~~~~~~~~~~I~~~l~~--~Le~~Gad~IVIaCNTAH~~~del~--~-~vPii-~i--------~tv~~~~~~~~~ 141 (233)
+|+|.+-... .-+-+.+.+ ...++|||+|.++|-+.-.-+.++. + ++|++ +| .+.+++++.|.+
T Consensus 165 I~ARTDa~~~--~gldeAi~Ra~ay~eAGAD~ifi~~~~~~~~~~~i~~~~~~~Pv~~n~~~~g~~p~~t~~eL~~lGv~ 242 (307)
T 3lye_A 165 LIARTDALQS--LGYEECIERLRAARDEGADVGLLEGFRSKEQAAAAVAALAPWPLLLNSVENGHSPLITVEEAKAMGFR 242 (307)
T ss_dssp EEEEECCHHH--HCHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHHHHHHTTSCBEEEEETTSSSCCCCHHHHHHHTCS
T ss_pred EEEechhhhc--cCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHccCCceeEEeecCCCCCCCCHHHHHHcCCe
Confidence 6777765431 112222222 4567899999999976433344444 4 47864 54 145678888876
Q ss_pred eEEEEcC
Q 046601 142 GIHVLMT 148 (233)
Q Consensus 142 rVGVLAT 148 (233)
+| +.+.
T Consensus 243 ~v-~~~~ 248 (307)
T 3lye_A 243 IM-IFSF 248 (307)
T ss_dssp EE-EEET
T ss_pred EE-EECh
Confidence 66 5544
No 134
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=21.54 E-value=1.2e+02 Score=28.36 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCcEE-eeccchhhhhHHhhc--CCCCeech--hc-hHh-----HHhhCCCeEEEEcCHHHHhhhh
Q 046601 89 LIAENLWSFLEKLGACYS-VIPCHIYRIWHDEVS--CFVPFLHV--TK-SKP-----LEVRSPLGIHVLMTNGILTAGV 156 (233)
Q Consensus 89 ~I~~~l~~~Le~~Gad~I-VIaCNTAH~~~del~--~~vPii~i--~t-v~~-----~~~~~~~rVGVLAT~gTi~sgl 156 (233)
...+.+++.|++.|++.| .+|-...-.+++.+. -++.++.. +. +.. ++.+ .+...+++|.|+=...+
T Consensus 12 ~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~t-G~pgv~~~TsGpG~~N~ 89 (578)
T 3lq1_A 12 DYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKAS-KRPVVLLCTSGTAAANY 89 (578)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHH-CCCEEEEECSSHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhh-CCCEEEEECCchhhhhh
Confidence 456677889999999988 456666666788887 36777766 21 111 2222 44556678877654443
No 135
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=21.29 E-value=32 Score=28.31 Aligned_cols=40 Identities=10% Similarity=-0.077 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhCCCCEEEE---cCCccccCCCC-CCCCCCeEe
Q 046601 188 NLLRRALQVLLARAVNIVIL---ASNDILDLLPP-DDPLFNKCI 227 (233)
Q Consensus 188 ~~l~~~~~~l~~~gaD~vIL---GCTElPll~~~-~~~~~v~iI 227 (233)
..+-+.++.-...++|.+|+ |+||+++++.+ ....++|+|
T Consensus 65 GeLId~Ih~a~~~~~dgIIINpgAyTHtSvAlrDAl~~v~~P~V 108 (176)
T 2c4w_A 65 GEIIDKIQESVGSEYEGIIINPGAFSHTSIAIADAIMLAGKPVI 108 (176)
T ss_dssp HHHHHHHHHHHSSSCCEEEEECGGGGGTCHHHHHHHHTSSSCEE
T ss_pred HHHHHHHHHhccCCeeEEEECcchhccchHHHHHHHHhCCCCEE
Confidence 33444455555566999998 89999998876 333345554
No 136
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=21.20 E-value=27 Score=28.00 Aligned_cols=39 Identities=13% Similarity=-0.086 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhCCCCEEEE---cCCccccCCCC-CCCCCCeEe
Q 046601 189 LLRRALQVLLARAVNIVIL---ASNDILDLLPP-DDPLFNKCI 227 (233)
Q Consensus 189 ~l~~~~~~l~~~gaD~vIL---GCTElPll~~~-~~~~~v~iI 227 (233)
.+-+.++.-...++|.+|+ |+||+++++.+ ....++|+|
T Consensus 54 eLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~V 96 (149)
T 2uyg_A 54 QLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVV 96 (149)
T ss_dssp HHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEE
T ss_pred HHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEE
Confidence 3444444445556999998 89999998876 333345554
No 137
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=21.16 E-value=2e+02 Score=26.68 Aligned_cols=68 Identities=6% Similarity=-0.301 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCcEE-eeccchhhhhHHhhc-CCCCeech--hch-Hh-----HHhhCCCeEEEEcCHHHHhhhhHH
Q 046601 90 IAENLWSFLEKLGACYS-VIPCHIYRIWHDEVS-CFVPFLHV--TKS-KP-----LEVRSPLGIHVLMTNGILTAGVLK 158 (233)
Q Consensus 90 I~~~l~~~Le~~Gad~I-VIaCNTAH~~~del~-~~vPii~i--~tv-~~-----~~~~~~~rVGVLAT~gTi~sglY~ 158 (233)
..+.+.+.|++.|++.+ .+|-...-.+++.+. .++.++.. +.. .. ++.. .+...++.|.|+=...++.
T Consensus 12 ~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~i~~i~~~~E~~Aa~~A~GyAr~t-g~pgv~~~TsGpG~~N~~~ 89 (568)
T 2c31_A 12 GFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDDGQRFYSFRHEQHAGYAASIAGYIE-GKPGVCLTVSAPGFLNGVT 89 (568)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHTTCEEEECSSHHHHHHHHHHHHHHH-SSCEEEEECSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhCCCcEEEeCcHHHHHHHHHHHHHHh-CCCEEEEEcCCccHHHHHH
Confidence 45688889999999988 566655555678777 66777766 211 11 2222 4556778898885554443
No 138
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=21.02 E-value=1.2e+02 Score=28.14 Aligned_cols=60 Identities=8% Similarity=-0.013 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCcEE-eeccchhhhhHHhhc-C-CCCeech--hch-H-----hHHhhCCCeEEEEcCHHHH
Q 046601 91 AENLWSFLEKLGACYS-VIPCHIYRIWHDEVS-C-FVPFLHV--TKS-K-----PLEVRSPLGIHVLMTNGIL 152 (233)
Q Consensus 91 ~~~l~~~Le~~Gad~I-VIaCNTAH~~~del~-~-~vPii~i--~tv-~-----~~~~~~~~rVGVLAT~gTi 152 (233)
.+.+.+.|++.|++.+ .+|..+.-.+++.+. . .+.++.. +.. . .++.+ . ...++.|.|+=
T Consensus 6 a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~t-g-~~v~~~TsGpG 76 (568)
T 2wvg_A 6 GTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAK-G-AAAAVVTYSVG 76 (568)
T ss_dssp HHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHH-S-CEEEEECTTTT
T ss_pred HHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhh-C-CeEEEEeCCCC
Confidence 4578889999999988 778877777888887 3 5777766 211 1 12333 3 66778888773
No 139
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.97 E-value=1.4e+02 Score=21.31 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHHHHHcCCcEEeeccchhhhhHHhhc-----CCCCeech-hchHhH
Q 046601 94 LWSFLEKLGACYSVIPCHIYRIWHDEVS-----CFVPFLHV-TKSKPL 135 (233)
Q Consensus 94 l~~~Le~~Gad~IVIaCNTAH~~~del~-----~~vPii~i-~tv~~~ 135 (233)
..+.+++-.+.++++|.|..--....+. .++|++.. .+-+++
T Consensus 23 v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eL 70 (99)
T 3j21_Z 23 TIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVEL 70 (99)
T ss_dssp HHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCGG
T ss_pred HHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHH
Confidence 3447778889999999996544445554 78998766 554444
No 140
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=20.67 E-value=1.9e+02 Score=26.87 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCcEE-eeccchhhhhHHhhc-C-CCCeech--hch-H-----hHHhhCCCeEEEEcCHHHHhhhhH
Q 046601 90 IAENLWSFLEKLGACYS-VIPCHIYRIWHDEVS-C-FVPFLHV--TKS-K-----PLEVRSPLGIHVLMTNGILTAGVL 157 (233)
Q Consensus 90 I~~~l~~~Le~~Gad~I-VIaCNTAH~~~del~-~-~vPii~i--~tv-~-----~~~~~~~~rVGVLAT~gTi~sglY 157 (233)
..+.+.+.|++.|++.+ .+|..+.-.+++.+. . ++.++.. +.. . .++.+ . ...++.|.|+-....+
T Consensus 27 ~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~t-G-~~v~~~tsGpG~~N~~ 103 (570)
T 2vbf_A 27 VGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTK-K-AAAFLTTFGVGELSAI 103 (570)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHH-S-CEEEEEETTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHh-C-CeEEEEcCCCCHHHHH
Confidence 45678889999999988 788888788889887 4 5777766 211 1 12233 3 6677888887644433
No 141
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=20.30 E-value=74 Score=29.86 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=29.2
Q ss_pred HHHHcCCcEEeeccchhhhhHHhh----c-------CCCCeech-hchHh
Q 046601 97 FLEKLGACYSVIPCHIYRIWHDEV----S-------CFVPFLHV-TKSKP 134 (233)
Q Consensus 97 ~Le~~Gad~IVIaCNTAH~~~del----~-------~~vPii~i-~tv~~ 134 (233)
..++.|||+||-+|..-+.-++.- . .++|++|+ +-+..
T Consensus 443 ~a~~tgAd~IvT~Cp~C~~~l~~~q~~~~k~~g~~~~~ipV~h~~eLLa~ 492 (514)
T 3kwl_A 443 LGIDLGADFLIAHSLGLFYAFENLSLKASKIYKRDNDNTPTLFLPQIALM 492 (514)
T ss_dssp HHHHTTCSEEEESCHHHHHHHTTTHHHHHTTSCSCCCCCCEECHHHHHHH
T ss_pred HHHHcCCCEEEecCHHHHHHHHhHhHHHHHhhCCCCCCCcEeeHHHHHHH
Confidence 667889999999999988877652 2 37999998 44443
No 142
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=20.14 E-value=1e+02 Score=27.23 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=37.2
Q ss_pred HHhhCCCeEEEEcCHHHHhhhhHHHHHcc--ccCcchhhhHHHHHHhcCCcHHHHHHHHHHHHHHhhCCCCEEE
Q 046601 135 LEVRSPLGIHVLMTNGILTAGVLKLCYQI--KATMEHTLIPAVDALNRKDVEGATNLLRRALQVLLARAVNIVI 206 (233)
Q Consensus 135 ~~~~~~~rVGVLAT~gTi~sglY~~~l~~--~~~q~~~v~~~I~~vk~G~~~~~~~~l~~~~~~l~~~gaD~vI 206 (233)
++..+.+|+.|+..+...+.+++++.... ....+..+ +..+......+.+.+..+.+.+.++|.||
T Consensus 26 l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~------~~~~~~~p~~~~v~~~~~~~~~~~~d~II 93 (386)
T 1rrm_A 26 VKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAI------YDGVVPNPTITVVKEGLGVFQNSGADYLI 93 (386)
T ss_dssp HHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEE------ECBCCSSCBHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEE------ECCccCCCCHHHHHHHHHHHHhcCcCEEE
Confidence 34445689999998888777777776551 11111000 01111112345566666667777888777
No 143
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=20.10 E-value=90 Score=26.28 Aligned_cols=57 Identities=7% Similarity=-0.025 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCcEEeeccch-hhhhHHhhc-CCCCeech---------------------hchHhHHhhCCCeEEEEcCH
Q 046601 93 NLWSFLEKLGACYSVIPCHI-YRIWHDEVS-CFVPFLHV---------------------TKSKPLEVRSPLGIHVLMTN 149 (233)
Q Consensus 93 ~l~~~Le~~Gad~IVIaCNT-AH~~~del~-~~vPii~i---------------------~tv~~~~~~~~~rVGVLAT~ 149 (233)
..++.|.+.++|.|++.... ....++.++ .++|++-+ .+++++.+.|.++||+++.+
T Consensus 115 ~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 194 (344)
T 3kjx_A 115 KVLYEMLSWRPSGVIIAGLEHSEAARAMLDAAGIPVVEIMDSDGKPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTK 194 (344)
T ss_dssp HHHHHHHTTCCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSCCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESS
T ss_pred HHHHHHHhCCCCEEEEECCCCCHHHHHHHHhCCCCEEEEeCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 34456677899999876432 223345555 55665432 22345556688999999765
No 144
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=20.02 E-value=1.3e+02 Score=28.04 Aligned_cols=59 Identities=8% Similarity=-0.027 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCcEE-eeccchhhhhHHhhc-C-CCCeech--hch-H-----hHHhhCCCeEEEEcCHHH
Q 046601 91 AENLWSFLEKLGACYS-VIPCHIYRIWHDEVS-C-FVPFLHV--TKS-K-----PLEVRSPLGIHVLMTNGI 151 (233)
Q Consensus 91 ~~~l~~~Le~~Gad~I-VIaCNTAH~~~del~-~-~vPii~i--~tv-~-----~~~~~~~~rVGVLAT~gT 151 (233)
.+.+.+.|++.|++.+ .+|..+.-.+++.+. . ++.++.. +.. . ..+.+ . ...++.|.|+
T Consensus 6 a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~t-g-~~v~~~TsGp 75 (566)
T 2vbi_A 6 GMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSN-G-AAAAVVTFSV 75 (566)
T ss_dssp HHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHH-S-CEEEEECTTT
T ss_pred HHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhc-C-CeEEEEeCCC
Confidence 4578889999999987 788888888888887 3 5777766 211 1 12223 3 5667788775
Done!