BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046604
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Query: 43 LPYIIKFCKAHGVSKENEFGKGKSN-------------DELKEMLLVADYLTIKDTLDYL 89
L +I++C H K++ G G + L E++L A+YL IK LD
Sbjct: 49 LKKVIQWCTHH---KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVT 105
Query: 90 AETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
+T+AN IK K+ E IRK F I+N+F EE+ RKE
Sbjct: 106 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 142
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Query: 43 LPYIIKFCKAHGVSKENEFGKGKSN-------------DELKEMLLVADYLTIKDTLDYL 89
L +I++C H K++ G G + L E++L A+YL IK LD
Sbjct: 49 LKKVIQWCTHH---KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVT 105
Query: 90 AETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
+T+AN IK K+ E IRK F I+N+F EE+ RKE
Sbjct: 106 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 142
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 19/94 (20%)
Query: 43 LPYIIKFCKAH---GVSKENEF-GKGKSNDELK---------------EMLLVADYLTIK 83
L +I++CK H SK G S+D+LK E++L A+YL IK
Sbjct: 52 LAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIK 111
Query: 84 DTLDYLAETLANRIKNKSVEYIRKFFGIENNFMP 117
+ LD +T+A+ IK K+ E IR F I+N+F P
Sbjct: 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTP 145
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
L E++L A+YL IK LD +T+AN IK K+ E IRK F I+N+F EE+ RKE
Sbjct: 99 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 155
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
L E++L A+YL IK LD +T+AN IK K+ E IRK F I+N+F EE+ RKE
Sbjct: 103 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 159
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKE 126
L E++L A+YL IK LD +T+AN IK K+ E IRK F I+N+F EE+ RKE
Sbjct: 82 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 138
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYEL 129
L E++L A+YL IK LD + +A I+ +S E IR+ F I N+F PEE+ A R+E E
Sbjct: 106 LYEIILAANYLNIKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEW 165
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYEL 129
L E++L A+YL IK LD + +A I+ +S E IR+ F I N+F PEE+ A R+E E
Sbjct: 106 LYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEW 165
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115
L E++L A+YL IK LD +T+AN IK K+ E IRK F I+N+F
Sbjct: 94 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFF 109
L E++L A+YL IK LD +T+AN IK K+ E IRK F
Sbjct: 93 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 132
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 5 IFEDGGQQLFKVEEQGCSRLCSHSSTSDGTSEDM 38
+F+DG Q+L K+ Q S LC +T +G S D+
Sbjct: 116 LFKDGDQKLEKIICQEISTLCDMLATHNGQSIDI 149
>pdb|2FN0|A Chain A, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN0|B Chain B, Crystal Structure Of Yersinia Enterocolitica Salicylate
Synthase (Irp9)
pdb|2FN1|A Chain A, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
pdb|2FN1|B Chain B, Crystal Structures Of Yersinia Enterocolitica Salicylate
Synthase (Irp9) In Complex With The Reaction Products
Salicylate And Pyruvate
Length = 437
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 2 EENIFEDGGQQLFKVEEQGCSRLCSHSSTSDGTSED 37
EE IFE G ++ GC RLC + T+++
Sbjct: 129 EELIFEKGNVTVYADSADGCRRLCEWVKEASTTTQN 164
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 15/63 (23%)
Query: 15 KVEEQGCSRLCSHSSTSDGTSEDMVVLQLPYIIKFCKAHGVSKENEFGKGKSNDELKEML 74
K+ GC +CS++ T DG + G N+ G G +DEL+ ++
Sbjct: 347 KIVSVGCGEVCSYAVTIDGK---------------LYSWGSGVNNQLGVGDGDDELEPIV 391
Query: 75 LVA 77
+V+
Sbjct: 392 VVS 394
>pdb|4FNR|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
Length = 729
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 75 LVADYLTIKDTLDYLAETLANRIKNKSVEYI-----RKFFGIENNFMPEEKE 121
LV DY + +D DY+ ET++N + + + Y+ R I ++ +P E++
Sbjct: 446 LVLDY-SREDVCDYIIETISNVLASAPITYVKWDMNRHMTEIGSSALPPERQ 496
>pdb|4FNQ|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agab From
Geobacillus Stearothermophilus
Length = 729
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 75 LVADYLTIKDTLDYLAETLANRIKNKSVEYI-----RKFFGIENNFMPEEKE 121
LV DY + +D DY+ ET++N + + + Y+ R I ++ +P E++
Sbjct: 446 LVLDY-SREDVCDYIIETISNVLASAPITYVKWDMNRHMTEIGSSALPPERQ 496
>pdb|4FNU|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
Length = 729
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 75 LVADYLTIKDTLDYLAETLANRIKNKSVEYI-----RKFFGIENNFMPEEKE 121
LV DY + +D DY+ ET++N + + + Y+ R I ++ +P E++
Sbjct: 446 LVLDY-SREDVCDYIIETISNVLASAPITYVKWAMNRHMTEIGSSALPPERQ 496
>pdb|4FNT|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
Length = 729
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 75 LVADYLTIKDTLDYLAETLANRIKNKSVEYI-----RKFFGIENNFMPEEKE 121
LV DY + +D DY+ ET++N + + + Y+ R I ++ +P E++
Sbjct: 446 LVLDY-SREDVCDYIIETISNVLASAPITYVKWDMNRHMTEIGSSALPPERQ 496
>pdb|4FNP|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNS|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
Length = 729
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 75 LVADYLTIKDTLDYLAETLANRIKNKSVEYI-----RKFFGIENNFMPEEKE 121
LV DY + +D DY+ ET++N + + + Y+ R I ++ +P E++
Sbjct: 446 LVLDY-SREDVCDYIIETISNVLASAPITYVKWDMNRHMTEIGSSALPPERQ 496
>pdb|2G6T|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Clostridium Acetobutylicum
pdb|2G6T|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Clostridium Acetobutylicum
Length = 306
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 11 QQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQLPYIIKFCKAHG--------VSKENEFG 62
+Q KVE++G C+ S GT ++ ++L + F +A ++K+N F
Sbjct: 158 EQELKVEQEGNVYSCTXPKGSLGTGDNKIILNFNHQASFAEAKNDWDERKTRINKKNLFV 217
Query: 63 KGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEA 122
K D+ ++++ D L K+ + + + K KSV + ++ N+ +
Sbjct: 218 KXLIKDDNEKLVKRFDNLPYKNKVCFHPKPX----KYKSVAFFPRYIWRCINYAARTSNS 273
Query: 123 TRKEY 127
++Y
Sbjct: 274 NLEQY 278
>pdb|3GR5|A Chain A, Periplasmic Domain Of The Outer Membrane Secretin Escc
From Enteropathogenic E.Coli (Epec)
Length = 156
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 68 DELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPE 118
+E+ ++ YL I L YL++T++ + +V I F IE +PE
Sbjct: 87 NEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKITTFNSIEVRGVPE 137
>pdb|2CQM|A Chain A, Solution Structure Of The Mitochondrial Ribosomal Protein
L17 Isolog
Length = 122
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 64 GKSNDELKEMLLVAD-YLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEA 122
GK D + + +AD +LT KD + L + LA R K+++ Y R I N + K A
Sbjct: 43 GKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTR-MLQIPNRSLDRAKMA 101
Query: 123 T 123
Sbjct: 102 V 102
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 77 ADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKE 121
AD + + LDY+AETL N + + G++N M + KE
Sbjct: 47 ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKE 91
>pdb|2FTC|J Chain J, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
pdb|3IY9|S Chain S, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
Length = 116
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 64 GKSNDELKEMLLVAD-YLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEA 122
GK D + + +AD +LT KD + L + LA R K+++ Y R I N + K A
Sbjct: 53 GKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKDQTGGYTR-MLQIPNRSLDRAKMA 111
Query: 123 T 123
Sbjct: 112 V 112
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 77 ADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKE 121
AD + + LDY+AETL N + + G++N M + KE
Sbjct: 47 ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKE 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,923,336
Number of Sequences: 62578
Number of extensions: 143411
Number of successful extensions: 319
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 38
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)