Query 046604
Match_columns 134
No_of_seqs 118 out of 716
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 1.9E-48 6.5E-53 286.9 12.4 129 2-132 7-168 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 7.7E-47 2.6E-51 275.9 4.9 128 2-131 4-159 (160)
3 2ast_A S-phase kinase-associat 100.0 2.9E-43 9.8E-48 256.4 13.3 126 3-130 2-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 6.5E-40 2.2E-44 234.8 7.8 112 3-117 3-141 (141)
5 1hv2_A Elongin C, ELC1; protei 99.8 4.4E-22 1.5E-26 134.5 4.4 78 2-82 4-99 (99)
6 1vcb_B Protein (elongin C); tu 99.8 1.2E-21 4.1E-26 135.2 6.4 78 2-82 17-112 (112)
7 2fnj_C Transcription elongatio 99.8 4.9E-22 1.7E-26 133.5 3.8 78 2-82 1-96 (96)
8 4ajy_C Transcription elongatio 99.8 4.5E-19 1.5E-23 118.9 5.0 77 3-82 3-97 (97)
9 2yy9_A Zinc finger and BTB dom 98.4 6.1E-07 2.1E-11 62.2 6.8 90 3-103 27-125 (135)
10 2vkp_A BTB/POZ domain-containi 98.1 1.7E-05 5.9E-10 52.3 8.6 85 3-96 10-108 (109)
11 1buo_A POZ domain, protein (pr 98.1 5.2E-05 1.8E-09 51.2 10.0 83 3-97 30-121 (121)
12 3htm_A Speckle-type POZ protei 98.0 5.3E-05 1.8E-09 53.5 9.4 95 3-107 36-142 (172)
13 3b84_A Zinc finger and BTB dom 97.9 3.9E-05 1.3E-09 51.7 7.2 82 3-95 26-116 (119)
14 2if5_A Zinc finger and BTB dom 97.8 0.0001 3.5E-09 49.4 8.3 81 3-93 27-119 (120)
15 2vpk_A Myoneurin; transcriptio 97.8 0.00015 5E-09 48.4 8.9 82 3-94 24-115 (116)
16 1r29_A B-cell lymphoma 6 prote 97.8 0.00016 5.6E-09 48.9 9.1 82 3-94 31-124 (127)
17 2q81_A MIZ-1 protein; BTB/POZ 97.7 8.4E-05 2.9E-09 50.0 6.7 80 3-94 29-117 (119)
18 4eoz_A Speckle-type POZ protei 97.7 4.4E-05 1.5E-09 52.5 5.1 90 3-102 27-128 (145)
19 2z8h_A Transcription regulator 97.7 0.00011 3.9E-09 50.6 6.8 86 3-98 38-134 (138)
20 3hve_A Gigaxonin; ubiquitin, c 97.6 0.0003 1E-08 53.0 8.6 92 3-104 33-138 (256)
21 3i3n_A Kelch-like protein 11; 97.6 0.00035 1.2E-08 53.4 8.9 95 3-106 34-148 (279)
22 2ppi_A Gigaxonin; BTB domain, 97.6 0.00012 4.1E-09 51.1 5.6 81 3-93 49-143 (144)
23 3ga1_A Nucleus accumbens-assoc 97.5 5.2E-05 1.8E-09 51.7 3.4 82 3-95 35-126 (129)
24 3hqi_A Speckle-type POZ protei 97.5 0.00083 2.8E-08 51.9 10.2 95 3-107 176-282 (312)
25 3ohu_A Transcription regulator 97.3 7E-05 2.4E-09 50.6 1.2 79 3-91 34-123 (125)
26 3m5b_A Zinc finger and BTB dom 97.2 0.00047 1.6E-08 46.7 5.1 80 3-95 32-117 (119)
27 3fkc_A Transcriptional regulat 97.0 0.0024 8.2E-08 42.7 7.1 73 3-87 33-115 (116)
28 2ihc_A Transcription regulator 97.0 0.00028 9.5E-09 47.7 1.9 81 3-93 31-122 (124)
29 3drz_A BTB/POZ domain-containi 83.4 6.8 0.00023 25.4 7.4 84 3-95 7-106 (107)
30 2k9n_A MYB24; R2R3 domain, DNA 75.7 4.2 0.00014 26.4 4.4 36 91-126 25-67 (107)
31 1gv2_A C-MYB, MYB proto-oncoge 72.9 3.3 0.00011 26.6 3.3 36 91-126 28-70 (105)
32 1h8a_C AMV V-MYB, MYB transfor 70.2 8.1 0.00028 25.7 4.9 37 90-126 50-93 (128)
33 1wgx_A KIAA1903 protein; MYB D 65.8 4.6 0.00016 25.0 2.6 20 91-110 35-54 (73)
34 2cqq_A RSGI RUH-037, DNAJ homo 63.7 5.6 0.00019 24.3 2.7 19 91-110 35-53 (72)
35 3osg_A MYB21; transcription-DN 63.3 11 0.00037 25.1 4.4 36 90-125 33-75 (126)
36 3zqc_A MYB3; transcription-DNA 60.7 5.2 0.00018 26.9 2.4 35 91-125 26-67 (131)
37 1ug2_A 2610100B20RIK gene prod 59.6 6.8 0.00023 25.4 2.6 20 91-110 59-78 (95)
38 4eef_G F-HB80.4, designed hema 59.0 2.4 8.1E-05 26.4 0.4 44 66-113 26-69 (74)
39 1pd7_B MAD1; PAH2, SIN3, eukar 56.5 2.4 8.1E-05 21.0 0.0 12 70-81 5-16 (26)
40 1x41_A Transcriptional adaptor 52.5 12 0.00041 21.6 2.8 20 91-110 32-51 (60)
41 1h89_C C-MYB, MYB proto-oncoge 52.3 15 0.00052 25.2 3.8 36 91-126 82-124 (159)
42 2cjj_A Radialis; plant develop 50.2 11 0.00038 24.2 2.5 20 91-110 35-54 (93)
43 2jsp_A Transcriptional regulat 49.2 7.8 0.00027 24.8 1.6 25 91-116 36-60 (87)
44 2eqr_A N-COR1, N-COR, nuclear 48.4 13 0.00044 21.6 2.4 20 91-110 35-54 (61)
45 3g5o_A Uncharacterized protein 48.0 39 0.0013 21.9 5.0 70 43-113 20-97 (108)
46 2yus_A SWI/SNF-related matrix- 47.7 15 0.00052 22.6 2.8 39 66-110 22-60 (79)
47 2lr8_A CAsp8-associated protei 50.8 4.6 0.00016 24.8 0.0 21 89-110 38-58 (70)
48 2cqr_A RSGI RUH-043, DNAJ homo 44.9 8.1 0.00028 23.7 1.2 21 90-110 44-64 (73)
49 2elk_A SPCC24B10.08C protein; 43.7 21 0.0007 20.4 2.8 20 90-109 32-52 (58)
50 2yum_A ZZZ3 protein, zinc fing 43.7 19 0.00064 21.6 2.7 20 90-109 36-55 (75)
51 2f6h_X Myosin-2, type V myosin 43.3 35 0.0012 27.4 5.0 59 43-109 266-324 (419)
52 3tnt_A SARS coronavirus main p 41.1 15 0.00053 28.5 2.4 74 43-120 201-296 (306)
53 3hm5_A DNA methyltransferase 1 40.4 32 0.0011 22.1 3.6 18 92-109 54-76 (93)
54 2kw0_A CCMH protein; oxidoredu 38.0 24 0.00083 22.5 2.7 18 92-109 48-66 (90)
55 2hl7_A Cytochrome C-type bioge 36.7 27 0.00091 22.0 2.7 18 92-109 51-69 (84)
56 3drx_A BTB/POZ domain-containi 36.0 61 0.0021 23.6 4.9 85 3-96 13-113 (202)
57 2cu7_A KIAA1915 protein; nucle 36.0 30 0.001 20.6 2.7 19 91-109 32-50 (72)
58 3gag_A Putative NADH dehydroge 35.9 10 0.00034 26.6 0.6 18 98-115 158-175 (206)
59 2qq4_A Iron-sulfur cluster bio 35.7 37 0.0013 23.0 3.5 36 74-109 54-90 (138)
60 3few_X Colicin S4; cell lysis, 35.1 39 0.0013 27.7 4.0 31 91-121 166-196 (505)
61 4eo3_A Bacterioferritin comigr 34.9 13 0.00043 28.7 1.1 35 71-115 246-280 (322)
62 1guu_A C-MYB, MYB proto-oncoge 34.6 23 0.0008 19.4 2.0 19 91-109 27-45 (52)
63 1ni7_A ER75, hypothetical prot 34.5 64 0.0022 22.5 4.7 32 87-118 89-128 (155)
64 3lvl_A NIFU-like protein; prot 33.9 35 0.0012 22.9 3.1 36 74-109 54-90 (129)
65 1tc3_C Protein (TC3 transposas 33.6 49 0.0017 16.6 3.2 17 97-113 19-35 (51)
66 1xjs_A NIFU-like protein; SR17 33.5 42 0.0014 23.0 3.5 38 73-110 55-93 (147)
67 2xf7_A GP23.1; viral protein; 33.5 27 0.00092 19.6 2.0 32 96-129 14-46 (51)
68 2d9a_A B-MYB, MYB-related prot 31.5 34 0.0012 19.4 2.4 20 91-110 32-51 (60)
69 3g0m_A Cysteine desulfuration 31.3 53 0.0018 22.4 3.8 29 90-118 85-121 (141)
70 1xb4_A VPS25, hypothetical 23. 31.2 20 0.00068 26.3 1.6 14 43-56 31-44 (202)
71 1su0_B NIFU like protein ISCU; 30.8 55 0.0019 22.7 3.8 38 73-110 54-92 (159)
72 2llk_A Cyclin-D-binding MYB-li 30.3 42 0.0014 20.4 2.7 20 90-110 45-64 (73)
73 3d55_A Antitoxin, uncharacteri 29.8 25 0.00086 21.8 1.7 49 64-112 37-90 (91)
74 1gvd_A MYB proto-oncogene prot 29.0 25 0.00087 19.3 1.5 20 91-110 27-46 (52)
75 1ofc_X ISWI protein; nuclear p 28.8 36 0.0012 26.5 2.7 42 64-110 112-153 (304)
76 3ge6_A Nitroreductase; structu 28.4 13 0.00044 26.2 0.1 17 99-115 165-182 (212)
77 2z7e_A ISCU protein, NIFU-like 27.9 39 0.0013 23.6 2.6 37 74-110 53-90 (157)
78 2din_A Cell division cycle 5-l 27.5 43 0.0015 19.3 2.4 19 91-110 32-50 (66)
79 2dim_A Cell division cycle 5-l 27.4 45 0.0015 19.5 2.5 29 91-119 33-68 (70)
80 3cuq_C Vacuolar protein-sortin 27.1 24 0.00084 25.2 1.4 14 43-56 34-47 (176)
81 2iw5_B Protein corest, REST co 26.3 45 0.0016 25.0 2.8 21 90-110 155-175 (235)
82 1nox_A NADH oxidase; flavoenzy 26.2 19 0.00066 24.9 0.7 17 99-115 159-175 (205)
83 1j2j_B ADP-ribosylation factor 26.1 65 0.0022 17.9 2.8 20 89-108 9-28 (45)
84 3hr0_A COG4; conserved oligome 25.9 33 0.0011 25.9 2.0 24 100-123 238-261 (263)
85 2ki0_A DS119; beta-alpha-beta, 24.7 44 0.0015 17.2 1.7 11 116-126 13-23 (36)
86 2ftc_M Mitochondrial ribosomal 24.4 58 0.002 21.2 2.8 21 90-110 13-33 (110)
87 1a92_A Delta antigen; leucine 24.2 39 0.0013 19.1 1.6 16 117-132 27-42 (50)
88 1x3u_A Transcriptional regulat 23.8 83 0.0029 18.0 3.3 21 93-113 25-45 (79)
89 1b0n_B Protein (SINI protein); 23.5 40 0.0014 19.6 1.6 17 98-114 25-41 (57)
90 4dn2_A Nitroreductase; structu 23.3 28 0.00097 24.5 1.2 17 99-115 157-173 (208)
91 2b67_A COG0778: nitroreductase 23.3 34 0.0012 23.6 1.6 18 98-115 157-174 (204)
92 3of4_A Nitroreductase; structu 23.2 9.1 0.00031 27.3 -1.5 17 97-113 156-172 (209)
93 4iej_A DNA methyltransferase 1 22.6 97 0.0033 19.8 3.5 19 91-109 53-76 (93)
94 3few_X Colicin S4; cell lysis, 22.2 71 0.0024 26.2 3.4 39 92-130 254-293 (505)
95 1i4j_A 50S ribosomal protein L 22.2 66 0.0022 20.9 2.7 22 90-111 17-38 (110)
96 4dyq_A Gene 1 protein; GP1, oc 22.2 81 0.0028 21.0 3.3 28 83-113 15-42 (140)
97 4eb5_C NIFU protein (NIFU-1); 22.1 53 0.0018 22.9 2.3 35 74-108 48-83 (153)
98 1vfr_A NAD(P)H\:FMN oxidoreduc 22.0 18 0.00063 25.2 -0.1 18 98-115 165-183 (218)
99 3bem_A Putative NAD(P)H nitror 22.0 25 0.00085 24.8 0.7 17 99-115 170-186 (218)
100 3h4o_A Nitroreductase family p 21.5 26 0.00089 24.6 0.6 35 71-115 120-154 (191)
101 2jpc_A SSRB; DNA binding prote 21.4 71 0.0024 17.4 2.5 18 96-113 10-27 (61)
102 1je8_A Nitrate/nitrite respons 21.2 98 0.0033 18.3 3.3 18 96-113 33-50 (82)
103 2xuv_A HDEB, 10K-L protein; un 20.9 47 0.0016 20.6 1.7 14 43-56 51-64 (79)
104 3ge5_A Putative NAD(P)H:FMN ox 20.6 23 0.00079 25.1 0.2 35 71-115 129-163 (198)
105 3aaf_A Werner syndrome ATP-dep 20.6 34 0.0012 23.0 1.1 53 68-124 16-74 (134)
106 2fre_A NAD(P)H-flavin oxidored 20.5 42 0.0014 23.3 1.6 36 70-115 118-153 (200)
107 3r8s_S 50S ribosomal protein L 20.4 75 0.0026 20.6 2.7 21 90-110 17-37 (110)
108 2y9y_A Imitation switch protei 20.3 70 0.0024 25.6 3.0 42 64-110 125-167 (374)
109 2isk_A BLUB; oxidoreductase, f 20.0 23 0.00077 25.2 0.1 35 71-115 153-187 (230)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=1.9e-48 Score=286.86 Aligned_cols=129 Identities=31% Similarity=0.440 Sum_probs=114.4
Q ss_pred CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC-----C--Cceecc------hHHHHHHHHhcCCC----------
Q 046604 2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS-----E--DMVVLQ------LPYIIKFCKAHGVS---------- 56 (134)
Q Consensus 2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~-----~--~~Ipl~------L~~Iie~c~~h~~~---------- 56 (134)
..|+|+|+||+.|.|++.+|++ +|++| +++.+. + .+|||| |++|++||+||+.+
T Consensus 7 ~~i~L~SsDG~~F~V~~~vA~~S~tIk~m-l~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~ 85 (169)
T 3v7d_A 7 SNVVLVSGEGERFTVDKKIAERSLLLKNY-LNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDS 85 (169)
T ss_dssp CEEEEECTTCCEEEEEHHHHTTSHHHHHH-HHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC------
T ss_pred CeEEEEeCCCCEEEecHHHHHHhHHHHHH-HHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccc
Confidence 4699999999999999999999 99999 987653 2 689998 99999999999853
Q ss_pred ------c--ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCHHHHHHHHHhch
Q 046604 57 ------K--ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYE 128 (134)
Q Consensus 57 ------k--D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~ 128 (134)
+ |++|+++ +.+.||+|+.|||||+|++|+++||++||++|+||||||||++|||++||||||++++|+||+
T Consensus 86 ~~~~~i~~wD~~Fl~v-d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~en~ 164 (169)
T 3v7d_A 86 RKSAPVDSWDREFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENE 164 (169)
T ss_dssp --CCCCCHHHHHHTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTTC-
T ss_pred cccccccHHHHHHHcC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhcc
Confidence 1 8899997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 046604 129 LLRL 132 (134)
Q Consensus 129 w~~~ 132 (134)
|+|.
T Consensus 165 W~~~ 168 (169)
T 3v7d_A 165 WAED 168 (169)
T ss_dssp ----
T ss_pred cccc
Confidence 9984
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=7.7e-47 Score=275.86 Aligned_cols=128 Identities=34% Similarity=0.515 Sum_probs=79.9
Q ss_pred CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCC------------c----
Q 046604 2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVS------------K---- 57 (134)
Q Consensus 2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~------------k---- 57 (134)
..|+|+|+||+.|.|++.+|.+ +|++| +++.+.+.+||+| |++|++||+||+.+ +
T Consensus 4 ~~v~L~SsDg~~f~v~~~vA~~S~~ik~m-l~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~ 82 (160)
T 2p1m_A 4 KKIVLKSSDGESFEVEEAVALESQTIAHM-VEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD 82 (160)
T ss_dssp ----CCC---------CHHHHTCTTTC-------------CCTTSCHHHHHHHHHC------------------------
T ss_pred CEEEEEcCCCCEEEECHHHHHHhHHHHHH-HHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccch
Confidence 4699999999999999999999 99999 9987666789998 99999999999842 1
Q ss_pred ----ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCHHHHHHHHHhchhhh
Q 046604 58 ----ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELLR 131 (134)
Q Consensus 58 ----D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~w~~ 131 (134)
|++|++. +.+.||+|+.|||||+|++|+++||++||++|+||||+|||++|||++||||||+++||+||+|++
T Consensus 83 i~~wD~~Fl~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~ 159 (160)
T 2p1m_A 83 LKAWDADFMKI-DQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAF 159 (160)
T ss_dssp -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCcccc
Confidence 8899997 999999999999999999999999999999999999999999999999999999999999999997
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=2.9e-43 Score=256.39 Aligned_cols=126 Identities=34% Similarity=0.491 Sum_probs=116.0
Q ss_pred ceEEEeCCCCEEEecHHHHHH--HHhhccCCC-CCCC----Cceecc------hHHHHHHHHhcCCC-------------
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSD-GTSE----DMVVLQ------LPYIIKFCKAHGVS------------- 56 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~-~~~~----~~Ipl~------L~~Iie~c~~h~~~------------- 56 (134)
.|+|+|+||+.|.|++.+|.+ ++++| +++ +..+ .+||+| |++|++||++|+.+
T Consensus 2 ~v~L~ssDg~~f~v~~~vA~~S~~i~~m-~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~ 80 (159)
T 2ast_A 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTM-LEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKR 80 (159)
T ss_dssp EEEEECTTSCEEEEEHHHHHTCHHHHHH-TTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------
T ss_pred eEEEEcCCCCEEEeCHHHHHHhHHHHHH-HHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccc
Confidence 489999999999999999988 99999 987 3232 689998 99999999999932
Q ss_pred ----c--ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCHHHHHHHHHhchhh
Q 046604 57 ----K--ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMPEEKEATRKEYELL 130 (134)
Q Consensus 57 ----k--D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~w~ 130 (134)
+ |++|++. +.+.|++|+.||+||+|++|+++||++||++|+||||+|||++|||++||||||+++||+||+|+
T Consensus 81 ~~~i~~wD~~F~~i-d~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en~w~ 159 (159)
T 2ast_A 81 TDDIPVWDQEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159 (159)
T ss_dssp CCCCCHHHHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHTTTC
T ss_pred hhhhhHHHHHHHcC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCCCC
Confidence 1 7889987 99999999999999999999999999999999999999999999999999999999999999996
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=6.5e-40 Score=234.79 Aligned_cols=112 Identities=33% Similarity=0.450 Sum_probs=98.0
Q ss_pred ceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCC-----------------c
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVS-----------------K 57 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~-----------------k 57 (134)
.|+|+|+||+.|.|++.+|.+ ++++| +++.+ +++||+| |++|++||+||+.+ +
T Consensus 3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~m-l~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~ 80 (141)
T 1fs1_B 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTM-LEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIP 80 (141)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHH-HHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHH-HHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhh
Confidence 489999999999999999988 99999 98755 6789998 99999999999843 1
Q ss_pred --ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCH
Q 046604 58 --ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNFMP 117 (134)
Q Consensus 58 --D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~t~ 117 (134)
|++|++. +.+.||+|+.|||||+|++|+++||++||++|+||||||||++|||++||||
T Consensus 81 ~wD~~F~~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 81 VWDQEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp HHHHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 7899987 9999999999999999999999999999999999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.85 E-value=4.4e-22 Score=134.49 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=67.3
Q ss_pred CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC--CCceecc------hHHHHHHHHhcCCCc--------cccccc
Q 046604 2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS--EDMVVLQ------LPYIIKFCKAHGVSK--------ENEFGK 63 (134)
Q Consensus 2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~--~~~Ipl~------L~~Iie~c~~h~~~k--------D~~F~~ 63 (134)
..|+|+|+||+.|.|++.+|.+ +|++| +++++. .++||+| |++|++||+||+.+. -.+| +
T Consensus 4 ~~v~L~SsDg~~f~V~~~vA~~S~~ik~m-l~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w-~ 81 (99)
T 1hv2_A 4 DFVTLVSKDDKEYEISRSAAMISPTLKAM-IEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-E 81 (99)
T ss_dssp SEEEEEETTTEEEEEEHHHHTTCHHHHHH-HHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-C
T ss_pred cEEEEEecCCCEEEECHHHHHHhHHHHHH-HhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCc-c
Confidence 5799999999999999999999 99999 987432 2689998 999999999998542 1245 5
Q ss_pred CCChHHHHHHHHhhccccc
Q 046604 64 GKSNDELKEMLLVADYLTI 82 (134)
Q Consensus 64 ~~~~~~l~~Li~AA~yL~I 82 (134)
+ +++.||+|+.|||||+|
T Consensus 82 v-d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 82 I-PTEMSLELLLAADYLSI 99 (99)
T ss_dssp C-CHHHHHHHHHHHHHHCC
T ss_pred C-CHHHHHHHHHHHHHhCc
Confidence 5 99999999999999997
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.85 E-value=1.2e-21 Score=135.16 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=66.6
Q ss_pred CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC-----CCceecc------hHHHHHHHHhcCCCc-----cccccc
Q 046604 2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS-----EDMVVLQ------LPYIIKFCKAHGVSK-----ENEFGK 63 (134)
Q Consensus 2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~-----~~~Ipl~------L~~Iie~c~~h~~~k-----D~~F~~ 63 (134)
..|+|+|+||+.|.|++.+|++ +|++| +++.+. ..+|||| |+||++||+||+.+. -.+| +
T Consensus 17 ~~v~L~SsDG~~F~V~~~~A~~S~tIk~m-l~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w-~ 94 (112)
T 1vcb_B 17 MYVKLISSDGHEFIVKREHALTSGTIKAM-LSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-P 94 (112)
T ss_dssp CEEEEECTTSCEEEEEHHHHHTSHHHHHH-SSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCC-C
T ss_pred CEEEEEcCCCCEEEECHHHHHHhHHHHHH-HHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCc-c
Confidence 4699999999999999999999 99999 997543 1589998 999999999998531 2356 6
Q ss_pred CCChHHHHHHHHhhccccc
Q 046604 64 GKSNDELKEMLLVADYLTI 82 (134)
Q Consensus 64 ~~~~~~l~~Li~AA~yL~I 82 (134)
+ +++.||+|+.|||||+|
T Consensus 95 v-d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 95 I-APEIALELLMAANFLDC 112 (112)
T ss_dssp C-CHHHHHHHHHHHHHHTC
T ss_pred c-CHHHHHHHHHHHHHhCc
Confidence 5 99999999999999997
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.84 E-value=4.9e-22 Score=133.53 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=66.3
Q ss_pred CceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC--C---Cceecc------hHHHHHHHHhcCCCc-----cccccc
Q 046604 2 EENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS--E---DMVVLQ------LPYIIKFCKAHGVSK-----ENEFGK 63 (134)
Q Consensus 2 ~~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~--~---~~Ipl~------L~~Iie~c~~h~~~k-----D~~F~~ 63 (134)
+.|+|+|+||+.|.|++.+|++ +|++| +++.+. + .+||+| |++|++||+||+.+. -.+| +
T Consensus 1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~m-l~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w-~ 78 (96)
T 2fnj_C 1 MYVKLISSDGHEFIVKREHALTSGTIKAM-LSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-P 78 (96)
T ss_dssp CEEEEECTTSCEEEEEHHHHTTSHHHHHH-HHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCC-C
T ss_pred CeEEEEecCCCEEEeCHHHHHHhHHHHHH-HHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCc-c
Confidence 4799999999999999999999 99999 987543 1 589998 999999999998531 2356 6
Q ss_pred CCChHHHHHHHHhhccccc
Q 046604 64 GKSNDELKEMLLVADYLTI 82 (134)
Q Consensus 64 ~~~~~~l~~Li~AA~yL~I 82 (134)
+ +++.||+|+.|||||+|
T Consensus 79 v-d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 79 I-APEIALELLMAANFLDC 96 (96)
T ss_dssp C-CTTTHHHHHHHHHHHTC
T ss_pred c-CHHHHHHHHHHHHHhCc
Confidence 5 99999999999999997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.76 E-value=4.5e-19 Score=118.93 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=64.2
Q ss_pred ceEEEeCCCCEEEecHHHHHH--HHhhccCCCCCC-----CCceecc------hHHHHHHHHhcCCCc-----ccccccC
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR--LCSHSSTSDGTS-----EDMVVLQ------LPYIIKFCKAHGVSK-----ENEFGKG 64 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~--~i~~~~le~~~~-----~~~Ipl~------L~~Iie~c~~h~~~k-----D~~F~~~ 64 (134)
.|+|+|+||+.|.|++.+|.+ ++++| +++.+. ..+||+| |++|++||+||+.+. -.+| ++
T Consensus 3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m-~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~-~i 80 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREHALTSGTIKAM-LSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-PI 80 (97)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHH-HCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCC-CC
T ss_pred EEEEEecCCcEEEecHHHHHHhHHHHHH-HHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcC-cC
Confidence 589999999999999999988 99999 987532 4689998 999999999997542 2345 45
Q ss_pred CChHHHHHHHHhhccccc
Q 046604 65 KSNDELKEMLLVADYLTI 82 (134)
Q Consensus 65 ~~~~~l~~Li~AA~yL~I 82 (134)
+.+.+++|+.||+||+.
T Consensus 81 -~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 81 -APEIALELLMAANFLDC 97 (97)
T ss_dssp -CGGGHHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHHhhhCC
Confidence 89999999999999983
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=98.42 E-value=6.1e-07 Score=62.24 Aligned_cols=90 Identities=16% Similarity=0.192 Sum_probs=64.3
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEM 73 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~L 73 (134)
.|+|+. +|+.|.+.+.+... .++.| +.... ...|.++ ++.+++|+...+ +.. +.+.+.+|
T Consensus 27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~m-f~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~-------~~i-~~~~v~~l 95 (135)
T 2yy9_A 27 DATLDV-GGLVFKAHWSVLACCSHFFQRI-YGDGT-GGSVVLPAGFAEIFGLLLDFFYTGH-------LAL-TSGNRDQV 95 (135)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHT-CC-----CCEEECGGGHHHHHHHHHHHHHSC-------CCC-CTTTHHHH
T ss_pred ceEEEE-CCEEEehHHHHHHHhCHHHHHH-HcCCC-CCeEEeCCCCHHHHHHHHHHHhCCC-------CCC-CHHHHHHH
Confidence 467775 68999999998766 99999 87643 3456665 999999998744 233 66779999
Q ss_pred HHhhccccchhHHHHHHHHHHHHhcCCCHH
Q 046604 74 LLVADYLTIKDTLDYLAETLANRIKNKSVE 103 (134)
Q Consensus 74 i~AA~yL~I~~Ll~l~~~~iA~~i~gks~e 103 (134)
+.||++|+|+.|.+.|++.+...+.|+++.
T Consensus 96 l~~A~~l~i~~L~~~C~~~l~~~l~~~~~~ 125 (135)
T 2yy9_A 96 LLAAKELRVPEAVELCQSFQPQTSVGQAQS 125 (135)
T ss_dssp HHHHHHTTCHHHHHHHHHCCC---------
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhccCCCCC
Confidence 999999999999999999999988887753
No 10
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=98.13 E-value=1.7e-05 Score=52.27 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=67.2
Q ss_pred ceEEEeCCC---CEEEecHHHHHH---HHhhccCCCCCC--CCceecc------hHHHHHHHHhcCCCcccccccCCChH
Q 046604 3 ENIFEDGGQ---QLFKVEEQGCSR---LCSHSSTSDGTS--EDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSND 68 (134)
Q Consensus 3 ~i~l~S~DG---~~f~V~~~~~~~---~i~~~~le~~~~--~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~ 68 (134)
.++|+..+| +.|.+.+.+... .++.| +..... ...|++| ++.+++|+..-. +.. +.+
T Consensus 10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~-f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~-------~~~-~~~ 80 (109)
T 2vkp_A 10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAM-FYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDE-------IDL-EAD 80 (109)
T ss_dssp CEEEEESSTTSCEEEEECHHHHHHHCHHHHHH-HC------CCEEEETTSCHHHHHHHHHHHHHCC-------CCC-CTT
T ss_pred cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHH-hcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCC-------ccC-CHH
Confidence 578888886 999999999875 88988 875421 1567766 999999998743 233 667
Q ss_pred HHHHHHHhhccccchhHHHHHHHHHHHH
Q 046604 69 ELKEMLLVADYLTIKDTLDYLAETLANR 96 (134)
Q Consensus 69 ~l~~Li~AA~yL~I~~Ll~l~~~~iA~~ 96 (134)
.+.+|+.+|++++++.|.+.|.+.+...
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 8899999999999999999999998764
No 11
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=98.06 E-value=5.2e-05 Score=51.18 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=66.6
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEM 73 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~L 73 (134)
.++|+. +|+.|.+.+.+... .++.| +... ...|.++ ++.+++|+..-. +.. +.+.+.+|
T Consensus 30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~-f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~-------~~~-~~~~~~~l 97 (121)
T 1buo_A 30 DVVIMV-DSQEFHAHRTVLACTSKMFEIL-FHRN--SQHYTLDFLSPKTFQQILEYAYTAT-------LQA-KAEDLDDL 97 (121)
T ss_dssp CEEEEE-SSCEEEECHHHHHHHCHHHHHH-TTSC--CSEEEECSSCHHHHHHHHHHHHHSC-------CCC-CGGGHHHH
T ss_pred CEEEEE-CCEEEehhHHHHhhcCHHHHHH-HcCC--CcEEEeCCCCHHHHHHHHHhhcCCC-------cCC-CHHHHHHH
Confidence 467775 68999999998765 99999 8764 3455555 999999998743 233 66789999
Q ss_pred HHhhccccchhHHHHHHHHHHHHh
Q 046604 74 LLVADYLTIKDTLDYLAETLANRI 97 (134)
Q Consensus 74 i~AA~yL~I~~Ll~l~~~~iA~~i 97 (134)
+.||+++++++|.+.|++.+...|
T Consensus 98 l~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 98 LYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987653
No 12
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=97.99 E-value=5.3e-05 Score=53.52 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=74.2
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCC---CCceecc------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTS---EDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDEL 70 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~---~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l 70 (134)
.++|+. +|+.|.+.+.+... .++.| +..... ...|.+| +..+++|+.... +.. +.+.+
T Consensus 36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~-f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~-------~~~-~~~~~ 105 (172)
T 3htm_A 36 DCCLCV-AGQEFQAHKAILAARSPVFSAM-FEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK-------APN-LDKMA 105 (172)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSC-------CTT-GGGTH
T ss_pred ceEEEE-CCEEEEeeHHHHHHcCHHHHHH-HccCccccCCCeEEecCCCHHHHHHHHHHHhCCC-------CCC-cHHHH
Confidence 467776 68999999998766 88988 875421 2466665 999999998744 223 66788
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHH
Q 046604 71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRK 107 (134)
Q Consensus 71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~ 107 (134)
.+|+.+|++++++.|.+.|.+.+...+...+.-++..
T Consensus 106 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~ 142 (172)
T 3htm_A 106 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 142 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999998777777665543
No 13
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=97.91 E-value=3.9e-05 Score=51.73 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=63.7
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEM 73 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~L 73 (134)
.++|+. +|+.|.+-+.+... .++.| +..+. ...|.+| ++.+++|+..-. +.. +.+.+.+|
T Consensus 26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~-f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~-------~~~-~~~~v~~l 94 (119)
T 3b84_A 26 DATLDV-GGLVFKAHWSVLACCSHFFQSL-YGDGS-GGSVVLPAGFAEIFGLLLDFFYTGH-------LAL-TSGNRDQV 94 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HTTTT-CCCEEECGGGHHHHHHHHHHHHHSC-------CCC-CTTTHHHH
T ss_pred ceEEEE-CCEEEEeeHHHHhhcCHHHHHH-HCCCC-CCeEEeCCCCHHHHHHHHHHHcCCC-------Ccc-CHHHHHHH
Confidence 466765 68999999998876 88999 87643 3556665 999999998743 223 56678999
Q ss_pred HHhhccccchhHHHHHHHHHHH
Q 046604 74 LLVADYLTIKDTLDYLAETLAN 95 (134)
Q Consensus 74 i~AA~yL~I~~Ll~l~~~~iA~ 95 (134)
+.||++|++++|.+.|++.+..
T Consensus 95 l~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 95 LLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 14
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=97.84 E-value=0.0001 Score=49.40 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=62.9
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC---CCCceecc------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT---SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDEL 70 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~---~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l 70 (134)
.++|+. +|+.|.+.+.+... .++.| +.... ....|.++ ++.+++|+..-. +.. +.+.+
T Consensus 27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~-f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~-------~~~-~~~~~ 96 (120)
T 2if5_A 27 DVVILV-EGREFPTHRSVLAACSQYFKKL-FTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT-------LTV-STANV 96 (120)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHC-----CCSEEECCSSCHHHHHHHHHHHHHSC-------CCC-CGGGH
T ss_pred CeEEEE-CCEEEeHHHHHHHHhCHHHHHH-hcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC-------Ccc-CHHHH
Confidence 466766 58999999998876 88888 76542 23456665 999999998743 233 67789
Q ss_pred HHHHHhhccccchhHHHHHHHHH
Q 046604 71 KEMLLVADYLTIKDTLDYLAETL 93 (134)
Q Consensus 71 ~~Li~AA~yL~I~~Ll~l~~~~i 93 (134)
.+|+.||+++++++|.+.|.+.+
T Consensus 97 ~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 97 GDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999998865
No 15
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=97.83 E-value=0.00015 Score=48.41 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=63.1
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCC-Cceecc------hHHHHHHHHhcCCCcccccccCCChHHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSE-DMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKE 72 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~-~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~ 72 (134)
.|+|+. +|+.|.+.+.+... .++.| +...... -.|++| ++.+++|+..-. +.. +.+.+.+
T Consensus 24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~-f~~~~~~~i~l~~~~~~~~~f~~ll~~~Yt~~-------~~~-~~~~v~~ 93 (116)
T 2vpk_A 24 DCTIVI-GEFQFKAHRNVLASFSEYFGAI-YRSTSENNVFLDQSQVKADGFQKLLEFIYTGT-------LNL-DSWNVKE 93 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HTTCCCSCEECCTTTCCHHHHHHHHHHHHHSC-------CCC-CTTTHHH
T ss_pred cEEEEE-CCEEEeccHHHHhhcCHHHHHH-HcCCCCCeEEeecCCCCHHHHHHHHHHHcCCC-------ccc-CHHHHHH
Confidence 466766 58999999998766 89999 8765322 233422 999999998743 233 6678999
Q ss_pred HHHhhccccchhHHHHHHHHHH
Q 046604 73 MLLVADYLTIKDTLDYLAETLA 94 (134)
Q Consensus 73 Li~AA~yL~I~~Ll~l~~~~iA 94 (134)
|+.||++|++++|.+.|++.+.
T Consensus 94 ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 94 IHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999998763
No 16
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=97.81 E-value=0.00016 Score=48.91 Aligned_cols=82 Identities=11% Similarity=0.160 Sum_probs=65.4
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCC--CCceec-c------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTS--EDMVVL-Q------LPYIIKFCKAHGVSKENEFGKGKSNDEL 70 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~--~~~Ipl-~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l 70 (134)
.|+|+. +|+.|.+.+.+... .++.| +..... ...|.+ + ++.+++|+..-. +.. +.+.+
T Consensus 31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~-f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~-------~~~-~~~~~ 100 (127)
T 1r29_A 31 DVVIVV-SREQFRAHKTVLMACSGLFYSI-FTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR-------LNL-REGNI 100 (127)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC-------CCC-CTTTH
T ss_pred CEEEEE-CCEEEehHHHHHHHhCHHHHHH-hcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCC-------cCc-CHHHH
Confidence 467766 58899999998866 88888 775432 356777 4 999999998743 233 66789
Q ss_pred HHHHHhhccccchhHHHHHHHHHH
Q 046604 71 KEMLLVADYLTIKDTLDYLAETLA 94 (134)
Q Consensus 71 ~~Li~AA~yL~I~~Ll~l~~~~iA 94 (134)
.+|+.||++|+++.|.+.|.+.+.
T Consensus 101 ~~ll~~A~~~~i~~L~~~c~~~l~ 124 (127)
T 1r29_A 101 MAVMATAMYLQMEHVVDTCRKFIK 124 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999875
No 17
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=97.75 E-value=8.4e-05 Score=50.03 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=62.7
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEM 73 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~L 73 (134)
.|+|+. +|+.|.+-+.+... .++.| +... ...|.++ ++.+++|+..-. +.. +.+.+.+|
T Consensus 29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~-f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~-------~~i-~~~~~~~l 96 (119)
T 2q81_A 29 DCTFVV-DGVHFKAHKAVLAACSEYFKML-FVDQ--KDVVHLDISNAAGLGQVLEFMYTAK-------LSL-SPENVDDV 96 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHHC--CSGGGGGGCCHHHHHHHHHHHHHSC-------CCC-CTTTHHHH
T ss_pred ceEEEE-CCEEEehhHHHHHHcCHHHHHH-HcCC--CCEEEeCCCCHHHHHHHHHHHcCCC-------Ccc-CHHHHHHH
Confidence 467765 68999999998766 88888 7653 2344443 999999998743 233 56779999
Q ss_pred HHhhccccchhHHHHHHHHHH
Q 046604 74 LLVADYLTIKDTLDYLAETLA 94 (134)
Q Consensus 74 i~AA~yL~I~~Ll~l~~~~iA 94 (134)
+.||++|++++|.+.|++.++
T Consensus 97 l~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 97 LAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999998874
No 18
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=97.72 E-value=4.4e-05 Score=52.47 Aligned_cols=90 Identities=10% Similarity=0.102 Sum_probs=63.4
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCC---CCceecc------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTS---EDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDEL 70 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~---~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l 70 (134)
.++|+. +|+.|.+.+.+... .++.| +..... ...|.+| ++.+++|+....- .. +.+.+
T Consensus 27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~-f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~-------~~-~~~~~ 96 (145)
T 4eoz_A 27 DCCLCV-AGQEFQAHKAILAARSPVFSAM-FEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA-------PN-LDKMA 96 (145)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC-------TT-GGGTH
T ss_pred ceEEEE-CCEEEEeehHHHHHcCHHHHHH-HcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc-------CC-cHHHH
Confidence 467775 68899999998866 88988 875421 2456665 9999999987542 23 66788
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHhcCCCH
Q 046604 71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSV 102 (134)
Q Consensus 71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~ 102 (134)
.+|+.+|++++++.|.+.|++.+...+...+.
T Consensus 97 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~ 128 (145)
T 4eoz_A 97 DDLLAAADKYALERLKVMCEDALCSNLSVENA 128 (145)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999998866654443
No 19
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=97.69 E-value=0.00011 Score=50.59 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=66.0
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCC-Cceecc-------hHHHHHHHHhcCCCcccccccCCChHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSE-DMVVLQ-------LPYIIKFCKAHGVSKENEFGKGKSNDELK 71 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~-~~Ipl~-------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~ 71 (134)
.|+|+. +|+.|.+-+.+... .++.| +.....+ ..|.+| ++.+++|+..-. +.. +.+.+.
T Consensus 38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~-f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~-------~~i-~~~~v~ 107 (138)
T 2z8h_A 38 DVTVLV-EGQRFRAHRSVLAACSSYFHSR-IVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAK-------LIL-SKDNVD 107 (138)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSC-------CCC-CTTTHH
T ss_pred CeEEEE-CCEEEechHHHHHHcCHHHHHH-HhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCC-------ccc-CHHHHH
Confidence 467766 58999999998866 88998 8765322 344442 999999998743 233 667799
Q ss_pred HHHHhhccccchhHHHHHHHHHHHHhc
Q 046604 72 EMLLVADYLTIKDTLDYLAETLANRIK 98 (134)
Q Consensus 72 ~Li~AA~yL~I~~Ll~l~~~~iA~~i~ 98 (134)
+|+.||++|+++.|.+.|++.+...+.
T Consensus 108 ~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 108 EVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998865543
No 20
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=97.60 E-value=0.0003 Score=52.98 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=68.2
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC-----CCCceecc------hHHHHHHHHhcCCCcccccccCCChH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT-----SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSND 68 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~-----~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~ 68 (134)
.|+|.. +|+.|.+.+.+... .++.| +..+. ....|+++ ++.+++|+..-. +.. +.+
T Consensus 33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~m-f~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~-------~~i-~~~ 102 (256)
T 3hve_A 33 DAHLVL-DGEEIPVQKNILAAASPYIRTK-LNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ-------IRL-NED 102 (256)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCHHHHHT-C-----------CEEECSSCCHHHHHHHHHHHHHSC-------CCC-C-C
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHH-hCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCC-------Ccc-cHh
Confidence 466765 68999999998876 89999 86542 12467765 999999998743 233 667
Q ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHH
Q 046604 69 ELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEY 104 (134)
Q Consensus 69 ~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~ee 104 (134)
.+.+|+.||++|+++.|.+.|++++...+.-.+.-.
T Consensus 103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~ 138 (256)
T 3hve_A 103 TIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIG 138 (256)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHH
Confidence 799999999999999999999999987766555333
No 21
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=97.59 E-value=0.00035 Score=53.35 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=69.5
Q ss_pred ceEEEeC--CCCEEEecHHHHHH---HHhhccCCCCC---CCCceec---------c---hHHHHHHHHhcCCCcccccc
Q 046604 3 ENIFEDG--GQQLFKVEEQGCSR---LCSHSSTSDGT---SEDMVVL---------Q---LPYIIKFCKAHGVSKENEFG 62 (134)
Q Consensus 3 ~i~l~S~--DG~~f~V~~~~~~~---~i~~~~le~~~---~~~~Ipl---------~---L~~Iie~c~~h~~~kD~~F~ 62 (134)
.|+|+.. ||+.|.+.+.+... .++.| +..+. ....|.+ + ++.+++|+.... +
T Consensus 34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~m-f~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~-------~ 105 (279)
T 3i3n_A 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPL-LSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGR-------I 105 (279)
T ss_dssp CEEEECC----CEEEECHHHHHHHCTTSGGG-CCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSE-------E
T ss_pred CeEEEEcCCCCeEEehHHHHHHHcCHHHHHH-hcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCC-------c
Confidence 4777776 79999999998876 88998 87542 1233433 2 999999998733 2
Q ss_pred cCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHH
Q 046604 63 KGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIR 106 (134)
Q Consensus 63 ~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir 106 (134)
.. +.+.+.+|+.||++|++++|.+.|++.+...+...+.-.+.
T Consensus 106 ~i-~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~ 148 (279)
T 3i3n_A 106 RV-STGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH 148 (279)
T ss_dssp EE-ETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHH
Confidence 23 56679999999999999999999999998887766655443
No 22
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=97.57 E-value=0.00012 Score=51.10 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=62.3
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC-----CCCceecc------hHHHHHHHHhcCCCcccccccCCChH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT-----SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSND 68 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~-----~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~ 68 (134)
.|+|+. +|+.|.+-+.++.. .++.| +.... ....|.++ ++.+++|+..-. +.. +.+
T Consensus 49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~m-f~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~-------~~i-~~~ 118 (144)
T 2ppi_A 49 DAHLVL-DGEEIPVQKNILAAASPYIRTK-LNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ-------IRL-NED 118 (144)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-HHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSC-------CCC-CTT
T ss_pred ceEEEE-CCEEEehHHHHHHHcCHHHHHH-HcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCC-------CCC-CHH
Confidence 467766 68999999998876 88888 75421 23466665 999999997532 233 677
Q ss_pred HHHHHHHhhccccchhHHHHHHHHH
Q 046604 69 ELKEMLLVADYLTIKDTLDYLAETL 93 (134)
Q Consensus 69 ~l~~Li~AA~yL~I~~Ll~l~~~~i 93 (134)
.+.+|+.||++|++++|.+.|++.+
T Consensus 119 ~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 8999999999999999999998754
No 23
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=97.55 E-value=5.2e-05 Score=51.72 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=58.7
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc-------hHHHHHHHHhcCCCcccccccCCChHHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ-------LPYIIKFCKAHGVSKENEFGKGKSNDELKE 72 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~-------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~ 72 (134)
.++|+. +|+.|.+-+.+... .++.| +... ....|.+| ++.+++|+..-. +.. +.+.+.+
T Consensus 35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~-f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~-------~~i-~~~~~~~ 103 (129)
T 3ga1_A 35 DVSVVV-KGHAFKAHRAVLAASSSYFRDL-FNNS-RSAVVELPAAVQPQSFQQILSFCYTGR-------LSM-NVGDQDL 103 (129)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHH-HHHC-CCSEEECCTTCCHHHHHHHHHHHHHSE-------EEC-CTTTHHH
T ss_pred ceEEEE-CCEEEEehHHHHHHcCHHHHHH-HcCC-CCCEEEECCCCCHHHHHHHHHHHhCCc-------ccc-CHHHHHH
Confidence 467775 79999999988876 88888 7754 33445552 999999998733 233 5667999
Q ss_pred HHHhhccccchhHHHHHHHHHHH
Q 046604 73 MLLVADYLTIKDTLDYLAETLAN 95 (134)
Q Consensus 73 Li~AA~yL~I~~Ll~l~~~~iA~ 95 (134)
|+.||++|+++.|.+.|++++..
T Consensus 104 ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 104 LMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp HHHHHHHTTBTTSSCC-------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 24
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=97.51 E-value=0.00083 Score=51.89 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=72.4
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCC---CCCceecc------hHHHHHHHHhcCCCcccccccCCChHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGT---SEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDEL 70 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~---~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l 70 (134)
.++|.. +|+.|.+.+.++.. .++.| +...- ....|.++ ++.+++|+.... +.. ..+.+
T Consensus 176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~-f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~-------~~~-~~~~~ 245 (312)
T 3hqi_A 176 DCCLCV-AGQEFQAHKAILAARSPVFSAM-FEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK-------APN-LDKMA 245 (312)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-TTC-----CCSEEEECSSCHHHHHHHHHHHHHSC-------CTT-HHHHH
T ss_pred ceEEEE-CCEEEeHHHHHHHHcCHHHHHH-hccCccccCCceEEecCCCHHHHHHHHHhhcCCC-------CCC-hHHHH
Confidence 466666 68999999988866 89998 87532 23567665 999999998743 222 45789
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHH
Q 046604 71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRK 107 (134)
Q Consensus 71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~ 107 (134)
.+|+.||++++++.|...|.+.+...+...+.-++..
T Consensus 246 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~ 282 (312)
T 3hqi_A 246 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 282 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999999999999999987766666655443
No 25
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=97.26 E-value=7e-05 Score=50.64 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=59.9
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCC-CCceecc-------hHHHHHHHHhcCCCcccccccCCChHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTS-EDMVVLQ-------LPYIIKFCKAHGVSKENEFGKGKSNDELK 71 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~-~~~Ipl~-------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~ 71 (134)
.|+|+. +|+.|.+-+.+... .++.| +..... ...|.+| ++.+++|+..-+ +.. +.+.+.
T Consensus 34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~-f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~-------~~~-~~~~v~ 103 (125)
T 3ohu_A 34 DVTLIV-ERKEFRAHRAVLAACSEYFWQA-LVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAK-------LLL-SRENIR 103 (125)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHH-HTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSE-------EEE-CTTTHH
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHH-hcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCc-------eEE-CHHHHH
Confidence 467775 68999999998876 88988 876532 2344433 999999987632 233 567789
Q ss_pred HHHHhhccccchhHHHHHHH
Q 046604 72 EMLLVADYLTIKDTLDYLAE 91 (134)
Q Consensus 72 ~Li~AA~yL~I~~Ll~l~~~ 91 (134)
+|+.||++|+++.|.+.|++
T Consensus 104 ~ll~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 104 EVIRCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp HHHHHHHHHTBSSCTTSSCC
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999988864
No 26
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=97.23 E-value=0.00047 Score=46.66 Aligned_cols=80 Identities=11% Similarity=0.112 Sum_probs=56.1
Q ss_pred ceEEEeCCCCEEEecHHHHHHHHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccccCCChHHHHHHHHh
Q 046604 3 ENIFEDGGQQLFKVEEQGCSRLCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLV 76 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~Li~A 76 (134)
.|+|+. +|+.|.+-+.+... -... +... ...|.++ ++.+++|+..-+ +.. +.+.+.+|+.|
T Consensus 32 Dv~l~v-~~~~f~aHk~vLaa-~S~y-F~~~--~~~i~l~~v~~~~f~~ll~fiYtg~-------~~i-~~~~v~~ll~a 98 (119)
T 3m5b_A 32 DTLITV-GSQEFPAHSLVLAG-VSQQ-LGRR--GQWALGEGISPSTFAQLLNFVYGES-------VEL-QPGELRPLQEA 98 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHT-TCGG-GCCC--EEEECCSSCCHHHHHHHHHHHTTCC-------EEE-CGGGHHHHHHH
T ss_pred ceEEEE-CCEEEeeEHHHHHH-cCHH-HhcC--CCEEEeCCCCHHHHHHHHHHHcCCC-------cCc-CHHHHHHHHHH
Confidence 366765 68999998887765 1112 2211 1334443 999999997632 233 67789999999
Q ss_pred hccccchhHHHHHHHHHHH
Q 046604 77 ADYLTIKDTLDYLAETLAN 95 (134)
Q Consensus 77 A~yL~I~~Ll~l~~~~iA~ 95 (134)
|++|+|+.|.+.|++++.+
T Consensus 99 A~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 99 ARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHTTCHHHHHHHHHHC--
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 9999999999999998754
No 27
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=97.04 E-value=0.0024 Score=42.69 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=57.8
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCCCceecc------hHHHHHHHHhcCCCcccccc-cCCChHHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSEDMVVLQ------LPYIIKFCKAHGVSKENEFG-KGKSNDELKE 72 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~~~Ipl~------L~~Iie~c~~h~~~kD~~F~-~~~~~~~l~~ 72 (134)
.++|+. +|+.|.+-+.+... .++.| +... ...|.++ ++.+++|+..-+ + .. +.+.+.+
T Consensus 33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~-f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~-------~~~~-~~~~~~~ 100 (116)
T 3fkc_A 33 DVTVIV-EDRKFRAHKNILSASSTYFHQL-FSVA--GQVVELSFIRAEIFAEILNYIYSSK-------IVRV-RSDLLDE 100 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHH-TTSC--CSEEEECSSCHHHHHHHHHHHTTSC-------CCSC-CHHHHHH
T ss_pred eEEEEE-CCEEEehhHHHHHHcCHHHHHH-HcCC--CCEEEeCCCCHHHHHHHHHhhcCCC-------cCCC-CHHHHHH
Confidence 466765 68999999988866 89999 8764 3456665 999999987632 2 23 7888999
Q ss_pred HHHhhccccchhHHH
Q 046604 73 MLLVADYLTIKDTLD 87 (134)
Q Consensus 73 Li~AA~yL~I~~Ll~ 87 (134)
|+.||++|+|++|.+
T Consensus 101 ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 101 LIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHTCHHHHT
T ss_pred HHHHHHHhCccccCc
Confidence 999999999999865
No 28
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=96.97 E-value=0.00028 Score=47.74 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=60.4
Q ss_pred ceEEEeCCCCEEEecHHHHHH---HHhhccCCCCCCC-Cceecc-------hHHHHHHHHhcCCCcccccccCCChHHHH
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR---LCSHSSTSDGTSE-DMVVLQ-------LPYIIKFCKAHGVSKENEFGKGKSNDELK 71 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~---~i~~~~le~~~~~-~~Ipl~-------L~~Iie~c~~h~~~kD~~F~~~~~~~~l~ 71 (134)
.|+|+. +|+.|.+-+.+... .++.| +.....+ ..|.+| ++.+++|+..-. +.. +.+.+.
T Consensus 31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~m-f~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~-------~~i-~~~~v~ 100 (124)
T 2ihc_A 31 DVTIFV-EGQRFRAHRSVLAACSSYFHSR-IVGQADGELNITLPEEVTVKGFEPLIQFAYTAK-------LIL-SKENVD 100 (124)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHH-HTTC---CEEEECCTTSCHHHHHHHHHHHHHSE-------EEE-ETTTHH
T ss_pred CEEEEE-CCEEEecHHHHHHHcCHHHHHH-HcCCCCCCceEeecCCcCHHHHHHHHHHhcCCC-------ccc-CHHHHH
Confidence 466765 58999999998876 88998 8764322 344442 999999998733 223 556799
Q ss_pred HHHHhhccccchhHHHHHHHHH
Q 046604 72 EMLLVADYLTIKDTLDYLAETL 93 (134)
Q Consensus 72 ~Li~AA~yL~I~~Ll~l~~~~i 93 (134)
+|+.||++|+++.|.+.|++.+
T Consensus 101 ~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 101 EVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp HHHHHHHHHTBSSCCGGGGGTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHH
Confidence 9999999999999999998754
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=83.42 E-value=6.8 Score=25.37 Aligned_cols=84 Identities=8% Similarity=0.128 Sum_probs=55.4
Q ss_pred ceEEEeCCCCEEEecHHHHHH----HHhhccCCCCC-------CCCceecc-----hHHHHHHHHhcCCCcccccccCCC
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR----LCSHSSTSDGT-------SEDMVVLQ-----LPYIIKFCKAHGVSKENEFGKGKS 66 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~----~i~~~~le~~~-------~~~~Ipl~-----L~~Iie~c~~h~~~kD~~F~~~~~ 66 (134)
.|+|-= .|+.|.++...... .+..| +.... ....+=+. +..|+.|++..+-. +..
T Consensus 7 ~v~LNV-GG~~f~t~~~TL~~~p~s~L~~~-~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l~-----~p~-- 77 (107)
T 3drz_A 7 WVRLNV-GGTYFLTTRQTLCRDPKSFLYRL-CQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLV-----INK-- 77 (107)
T ss_dssp EEEEEE-TTEEEEEEHHHHTSSTTSHHHHH-HTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCCC-----CCT--
T ss_pred EEEEEE-CCEEEEECHHHHhcCCCcchhHH-HhcCCCCCcCCCCCceEEecCChHHHHHHHHHhCCCeeC-----CCC--
Confidence 444444 49999999988876 56666 54321 11233333 99999999874321 111
Q ss_pred hHHHHHHHHhhccccchhHHHHHHHHHHH
Q 046604 67 NDELKEMLLVADYLTIKDTLDYLAETLAN 95 (134)
Q Consensus 67 ~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~ 95 (134)
.-....+...|.|.+|++|.+.+-..|..
T Consensus 78 ~~~~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 78 DLAEEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 11135688999999999999999887753
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=75.73 E-value=4.2 Score=26.35 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCHHHHHHHhC------CC-CCCCHHHHHHHHHh
Q 046604 91 ETLANRIKNKSVEYIRKFFG------IE-NNFMPEEKEATRKE 126 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~e 126 (134)
..||..+.|+|+.+.|+.+. +. ..+|+||.+.+.+-
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~ 67 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHH
Confidence 46888888999999999653 33 46999999887653
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=72.86 E-value=3.3 Score=26.59 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCHHHHHHHhC------C-CCCCCHHHHHHHHHh
Q 046604 91 ETLANRIKNKSVEYIRKFFG------I-ENNFMPEEKEATRKE 126 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~------i-~~d~t~eee~~i~~e 126 (134)
..||..+.|+|+.+.|..+. + ...+|+||.+.+.+-
T Consensus 28 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 70 (105)
T 1gv2_A 28 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 70 (105)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHH
Confidence 57888888999999999763 2 236999999887663
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=70.15 E-value=8.1 Score=25.69 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCHHHHHHHhC------C-CCCCCHHHHHHHHHh
Q 046604 90 AETLANRIKNKSVEYIRKFFG------I-ENNFMPEEKEATRKE 126 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~~f~------i-~~d~t~eee~~i~~e 126 (134)
=..||..+.|+|+.++|..+. + ...+|+||.+.+.+-
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 357888889999999999763 2 236999998887653
No 33
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=65.79 E-value=4.6 Score=24.97 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 046604 91 ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~ 110 (134)
..||..+-|||++|+++.|.
T Consensus 35 e~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 35 SEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57888889999999998653
No 34
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=63.73 E-value=5.6 Score=24.31 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=14.9
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 046604 91 ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~ 110 (134)
..||..+ |||++|+++.|.
T Consensus 35 ~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 35 EKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHH
Confidence 4567666 999999998764
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=63.29 E-value=11 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCHHHHHHHhC------CCC-CCCHHHHHHHHH
Q 046604 90 AETLANRIKNKSVEYIRKFFG------IEN-NFMPEEKEATRK 125 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~~f~------i~~-d~t~eee~~i~~ 125 (134)
=..||..+.|+|+.+.|+.+. +.. .+|+||.+.+.+
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 467888888999999999653 333 599999988765
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=60.67 E-value=5.2 Score=26.86 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCHHHHHHHh------CCCC-CCCHHHHHHHHH
Q 046604 91 ETLANRIKNKSVEYIRKFF------GIEN-NFMPEEKEATRK 125 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f------~i~~-d~t~eee~~i~~ 125 (134)
..||..+.|+|+.+.|+.+ ++.. .+|+||.+.+.+
T Consensus 26 ~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 26 PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 3567777899999999976 3443 599999988765
No 37
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=59.58 E-value=6.8 Score=25.39 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=17.2
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 046604 91 ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~ 110 (134)
.++|.++.+||++|++..|.
T Consensus 59 a~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 45888889999999999883
No 38
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=58.97 E-value=2.4 Score=26.43 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=30.0
Q ss_pred ChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCC
Q 046604 66 SNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIEN 113 (134)
Q Consensus 66 ~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~ 113 (134)
..+.+|+-..|..=-+-+.-. ..||..+-|||++|+++.+.++.
T Consensus 26 eE~K~FE~ALa~yp~~tpdRW----ekIA~~VpGKT~eEVk~hY~~~~ 69 (74)
T 4eef_G 26 SENIAFEIALSFTNKDTPDRW----KKVAQYVKGRTPEEVKKHYELEH 69 (74)
T ss_dssp THHHHHHHHTSSSCSSCCSSS----TTTGGGSCSSCHHHHHGGGC---
T ss_pred HHHHHHHHHHHHCCCCCCcHH----HHHHHHcCCCCHHHHHHHHHHhh
Confidence 456777777777655544433 46777888999999999998764
No 39
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=56.52 E-value=2.4 Score=21.05 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=9.5
Q ss_pred HHHHHHhhcccc
Q 046604 70 LKEMLLVADYLT 81 (134)
Q Consensus 70 l~~Li~AA~yL~ 81 (134)
+--|+.||.||+
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 446889999986
No 40
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=52.46 E-value=12 Score=21.55 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 046604 91 ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~ 110 (134)
..||..+.|+|+.++|..|.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 32 QDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 67888889999999998663
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=52.27 E-value=15 Score=25.20 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCHHHHHHHhC------CC-CCCCHHHHHHHHHh
Q 046604 91 ETLANRIKNKSVEYIRKFFG------IE-NNFMPEEKEATRKE 126 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~e 126 (134)
..||..+.|+|+.++|..+. +. ..+|+||.+.+.+-
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 124 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 124 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHH
Confidence 56888889999999999764 33 35999998887653
No 42
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=50.20 E-value=11 Score=24.16 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 046604 91 ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~ 110 (134)
..||..+-|+|.+|+|..|.
T Consensus 35 ~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 35 ANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57888999999999999765
No 43
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=49.21 E-value=7.8 Score=24.79 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCHHHHHHHhCCCCCCC
Q 046604 91 ETLANRIKNKSVEYIRKFFGIENNFM 116 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~i~~d~t 116 (134)
++++.. -|.||+|=|+.||++.|+.
T Consensus 36 RHL~~~-hgltpeeYR~kwGlp~dyP 60 (87)
T 2jsp_A 36 RHLTTH-HSMTPEEYREKWDLPVDYP 60 (87)
T ss_dssp HHHHHT-TCSCHHHHHHHTTCGGGCC
T ss_pred HHHHHc-cCCCHHHHHHHhCCCCCCc
Confidence 455431 3999999999999999863
No 44
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.43 E-value=13 Score=21.62 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 046604 91 ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~ 110 (134)
..||..+.|||+.++++++-
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56788889999999998763
No 45
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=47.97 E-value=39 Score=21.88 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=51.0
Q ss_pred hHHHHHHHHhcCCC----c--ccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCC--CHHHHHHHhCCCC
Q 046604 43 LPYIIKFCKAHGVS----K--ENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNK--SVEYIRKFFGIEN 113 (134)
Q Consensus 43 L~~Iie~c~~h~~~----k--D~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gk--s~eeir~~f~i~~ 113 (134)
|..+++-+...... + ...++=+ +.+..-.|....+.|..+.+.....+.+++.-.|+ |.+|+++.+|+..
T Consensus 20 l~~ll~~v~~~~epViITr~G~~~aVl~-s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 20 LNEFVDAVSSTQDQITITKNGAPAAVLV-GADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp HHHHHHHHHTSSCEEEEEETTEEEEEEE-EHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred HHHHHHHHHhhCCcEEEEECCCCcEEEe-cHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 77777777543222 1 2333323 66666677777788889999999999998887775 8999999999975
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=47.66 E-value=15 Score=22.65 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhC
Q 046604 66 SNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 66 ~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~ 110 (134)
..++-.-|+.|-.-.+ . -=..||..+.|+|+.|+|..|.
T Consensus 22 T~eEd~~Ll~~v~~~G-~-----~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 22 TEQETLLLLEALEMYK-D-----DWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CHHHHHHHHHHHHHSS-S-----CHHHHHHHHSSCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-C-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 3444444555544444 2 1367888889999999999775
No 47
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=50.78 E-value=4.6 Score=24.81 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHhC
Q 046604 89 LAETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 89 ~~~~iA~~i~gks~eeir~~f~ 110 (134)
+.+++|..+ ||||+|+...|.
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 446788888 999999998875
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=44.86 E-value=8.1 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 046604 90 AETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~~f~ 110 (134)
=..||..+-|+|..|+|..|.
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 357888889999999999764
No 49
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=43.71 E-value=21 Score=20.43 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=16.7
Q ss_pred HHHHHHHhc-CCCHHHHHHHh
Q 046604 90 AETLANRIK-NKSVEYIRKFF 109 (134)
Q Consensus 90 ~~~iA~~i~-gks~eeir~~f 109 (134)
=..||..+. |+|+.+.|..|
T Consensus 32 W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 32 WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 367888888 89999999865
No 50
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.71 E-value=19 Score=21.56 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCHHHHHHHh
Q 046604 90 AETLANRIKNKSVEYIRKFF 109 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~~f 109 (134)
-..||..+.|+|+.|+|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 46788889999999999876
No 51
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=43.32 E-value=35 Score=27.43 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=40.7
Q ss_pred hHHHHHHHHhcCCCcccccccCCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHh
Q 046604 43 LPYIIKFCKAHGVSKENEFGKGKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFF 109 (134)
Q Consensus 43 L~~Iie~c~~h~~~kD~~F~~~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f 109 (134)
|..+-+||+.|.- .. -.+.|-.+..|++.|.++.=..--...+-+...--|+.||.+.+
T Consensus 266 ls~Le~W~~~~~l-------~~-a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il 324 (419)
T 2f6h_X 266 VTRLEEWCKTHGL-------TD-GTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLI 324 (419)
T ss_dssp HHHHHHHHHHTTC-------TT-HHHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCC-------hh-HHHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHH
Confidence 8889999999873 22 35568899999999998762222222344555677888888844
No 52
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=41.11 E-value=15 Score=28.47 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=52.8
Q ss_pred hHHHHHHHHhcCCC--c------------------ccccccCCChH--HHHHHHHhhccccchhHHHHHHHHHHHHhcCC
Q 046604 43 LPYIIKFCKAHGVS--K------------------ENEFGKGKSND--ELKEMLLVADYLTIKDTLDYLAETLANRIKNK 100 (134)
Q Consensus 43 L~~Iie~c~~h~~~--k------------------D~~F~~~~~~~--~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gk 100 (134)
=.-|+.|+..+--. + +..|-.. ..+ ..+..+.|..=.++.+|+...-+.+++-+.|+
T Consensus 201 T~NVvAwLYAAilng~~Wfl~~~~~sv~dfN~WA~~ngft~~-~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~g~~G~ 279 (306)
T 3tnt_A 201 TLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL-TQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGR 279 (306)
T ss_dssp HHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHTTBCCC-CHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHCCTTC
T ss_pred ehhHHHHHHHHHhcCCeEEeeccEecHHHHHHHHHhcCCccc-cccHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCCc
Confidence 56688898765221 1 3344333 443 45899999999999999988877777767788
Q ss_pred CHHHHHHHhCCCCCCCHHHH
Q 046604 101 SVEYIRKFFGIENNFMPEEK 120 (134)
Q Consensus 101 s~eeir~~f~i~~d~t~eee 120 (134)
+ |--...++++|||+|-
T Consensus 280 ~---IlG~~~leDE~Tp~~V 296 (306)
T 3tnt_A 280 T---ILGSTILEDEFTPFDV 296 (306)
T ss_dssp C---BTTBSSCCCSCCHHHH
T ss_pred e---eeccccccccCCHHHH
Confidence 7 5666668889999874
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=40.41 E-value=32 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=14.4
Q ss_pred HHHHHh-----cCCCHHHHHHHh
Q 046604 92 TLANRI-----KNKSVEYIRKFF 109 (134)
Q Consensus 92 ~iA~~i-----~gks~eeir~~f 109 (134)
.|+++. .+.|.|+|+..|
T Consensus 54 vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 54 VIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHSCTTTSCCCCHHHHHHHH
T ss_pred eehhhhccCCCCCCCHHHHHHHH
Confidence 678887 478999999865
No 54
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=38.00 E-value=24 Score=22.54 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=13.0
Q ss_pred HHHHHh-cCCCHHHHHHHh
Q 046604 92 TLANRI-KNKSVEYIRKFF 109 (134)
Q Consensus 92 ~iA~~i-~gks~eeir~~f 109 (134)
.|-.++ .|+|.+||+++|
T Consensus 48 ~Vre~l~~G~Sd~eI~~~m 66 (90)
T 2kw0_A 48 KVYELMQEGKSKKEIVDYM 66 (90)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 344444 599999999865
No 55
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=36.68 E-value=27 Score=22.01 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=13.0
Q ss_pred HHHHHh-cCCCHHHHHHHh
Q 046604 92 TLANRI-KNKSVEYIRKFF 109 (134)
Q Consensus 92 ~iA~~i-~gks~eeir~~f 109 (134)
.|-.++ .|+|.+||+.+|
T Consensus 51 ~V~~~l~~G~sd~eI~~~~ 69 (84)
T 2hl7_A 51 QIYGQLQQGKSDGEIVDYM 69 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 344444 599999999875
No 56
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=35.99 E-value=61 Score=23.64 Aligned_cols=85 Identities=9% Similarity=0.142 Sum_probs=53.9
Q ss_pred ceEEEeCCCCEEEecHHHHHH----HHhhccCCCC---C----CCCceecc-----hHHHHHHHHhcCCCcccccccCCC
Q 046604 3 ENIFEDGGQQLFKVEEQGCSR----LCSHSSTSDG---T----SEDMVVLQ-----LPYIIKFCKAHGVSKENEFGKGKS 66 (134)
Q Consensus 3 ~i~l~S~DG~~f~V~~~~~~~----~i~~~~le~~---~----~~~~Ipl~-----L~~Iie~c~~h~~~kD~~F~~~~~ 66 (134)
.|+|-= .|+.|..+...+.. .+..| +... + ....+=+. +..|+.|++.-+-. +.. +
T Consensus 13 ~V~LNV-GG~~F~Tt~sTL~r~PdS~L~~l-fs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~-----lP~-~ 84 (202)
T 3drx_A 13 WVRLNV-GGTYFLTTRQTLCRDPKSFLYRL-CQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLV-----INK-D 84 (202)
T ss_dssp EEEEEE-TTEEEEEETTGGGSCTTSSTHHH-HSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCC-----CCT-T
T ss_pred EEEEEE-CCEEEEEeHHHHhCCCcchHHHH-hcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccC-----CCC-C
Confidence 344443 48899998877765 45555 4321 1 11233333 99999999874311 111 1
Q ss_pred hHHHHHHHHhhccccchhHHHHHHHHHHHH
Q 046604 67 NDELKEMLLVADYLTIKDTLDYLAETLANR 96 (134)
Q Consensus 67 ~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~ 96 (134)
. ....+...|.|.+|.+|.+.+-..+..+
T Consensus 85 ~-~~~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 85 L-AEEGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp S-CHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 1 1246889999999999999999888755
No 57
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=35.95 E-value=30 Score=20.56 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=16.7
Q ss_pred HHHHHHhcCCCHHHHHHHh
Q 046604 91 ETLANRIKNKSVEYIRKFF 109 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f 109 (134)
..||..+.|+|..++|..|
T Consensus 32 ~~Ia~~~~~Rt~~q~k~r~ 50 (72)
T 2cu7_A 32 TKISKLIGSRTVLQVKSYA 50 (72)
T ss_dssp HHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 6788899999999999865
No 58
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=35.94 E-value=10 Score=26.64 Aligned_cols=18 Identities=11% Similarity=0.488 Sum_probs=14.8
Q ss_pred cCCCHHHHHHHhCCCCCC
Q 046604 98 KNKSVEYIRKFFGIENNF 115 (134)
Q Consensus 98 ~gks~eeir~~f~i~~d~ 115 (134)
.|-.++++|+.|||+++.
T Consensus 158 ~~~~~~~v~~~L~lp~~~ 175 (206)
T 3gag_A 158 RGVDFDAIKTYLDMPNGW 175 (206)
T ss_dssp CCSCHHHHHHHTTCCTTE
T ss_pred cccCHHHHHHHhCcCCCc
Confidence 356799999999998764
No 59
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=35.65 E-value=37 Score=22.98 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=23.6
Q ss_pred HHhhccccchhHHHHHH-HHHHHHhcCCCHHHHHHHh
Q 046604 74 LLVADYLTIKDTLDYLA-ETLANRIKNKSVEYIRKFF 109 (134)
Q Consensus 74 i~AA~yL~I~~Ll~l~~-~~iA~~i~gks~eeir~~f 109 (134)
|..+.|-.-=.-...+| -.++.+++|||.+|.++..
T Consensus 54 I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~ 90 (138)
T 2qq4_A 54 IADIRFQGQGCAISTASASLMTEAVKGKKVAEALELS 90 (138)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 44444444444444444 4557889999999998866
No 60
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=35.05 E-value=39 Score=27.68 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCHHHHHHHhCCCCCCCHHHHH
Q 046604 91 ETLANRIKNKSVEYIRKFFGIENNFMPEEKE 121 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~i~~d~t~eee~ 121 (134)
+-|-..|.-||||||-+.+|+++|-..-+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~ 196 (505)
T 3few_X 166 AGIMEKINHKTPEEIYEALGFNKDESQRQEK 196 (505)
T ss_dssp HHHHHHTTCCCHHHHHHHTTTTTTHHHHHHH
T ss_pred hhHHHHhcCCCHHHHHHHhCCCccchHHHHH
Confidence 3455668899999999999999985544433
No 61
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=34.88 E-value=13 Score=28.72 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 046604 71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115 (134)
Q Consensus 71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~ 115 (134)
..++.||..+++-.. .+.|-.++++|+.|||++++
T Consensus 246 ~nl~LaA~~~GLgs~----------~~~~~~~~~v~~~L~lP~~~ 280 (322)
T 4eo3_A 246 GNLLVQATQMGLVAH----------PVAGYDPVKVKEILKIPEDH 280 (322)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHcCcCEE----------EcCccCHHHHHHHcCcCCCC
Confidence 456666666665431 24567899999999999875
No 62
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=34.64 E-value=23 Score=19.42 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHhcCCCHHHHHHHh
Q 046604 91 ETLANRIKNKSVEYIRKFF 109 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f 109 (134)
..||..+.|+|+.++|..+
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw 45 (52)
T 1guu_A 27 KVIANYLPNRTDVQCQHRW 45 (52)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 5778888899999999865
No 63
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=34.48 E-value=64 Score=22.46 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHH--------HhCCCCCCCHH
Q 046604 87 DYLAETLANRIKNKSVEYIRK--------FFGIENNFMPE 118 (134)
Q Consensus 87 ~l~~~~iA~~i~gks~eeir~--------~f~i~~d~t~e 118 (134)
.-.+..+...+.|+||+||.+ .+|+..-+||-
T Consensus 89 kGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 89 RGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 333445555678999999986 46777777774
No 64
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=33.88 E-value=35 Score=22.86 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=23.0
Q ss_pred HHhhccccchhHHHHHH-HHHHHHhcCCCHHHHHHHh
Q 046604 74 LLVADYLTIKDTLDYLA-ETLANRIKNKSVEYIRKFF 109 (134)
Q Consensus 74 i~AA~yL~I~~Ll~l~~-~~iA~~i~gks~eeir~~f 109 (134)
|..+.|-.-=.-...+| -.++.+++|||.+|.++..
T Consensus 54 I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~ 90 (129)
T 3lvl_A 54 IEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIK 90 (129)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCC
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 44444544444444444 4567889999999998754
No 65
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.61 E-value=49 Score=16.62 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=14.3
Q ss_pred hcCCCHHHHHHHhCCCC
Q 046604 97 IKNKSVEYIRKFFGIEN 113 (134)
Q Consensus 97 i~gks~eeir~~f~i~~ 113 (134)
..|.|..+|-+.|||+.
T Consensus 19 ~~g~s~~~IA~~lgis~ 35 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSR 35 (51)
T ss_dssp HTTCCHHHHHHHHTCCH
T ss_pred HcCCCHHHHHHHHCcCH
Confidence 46899999999999873
No 66
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=33.54 E-value=42 Score=23.01 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=24.9
Q ss_pred HHHhhccccchhHHHHHH-HHHHHHhcCCCHHHHHHHhC
Q 046604 73 MLLVADYLTIKDTLDYLA-ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 73 Li~AA~yL~I~~Ll~l~~-~~iA~~i~gks~eeir~~f~ 110 (134)
.|..+.|-.-=.-...+| -.++.+++|||.+|.++...
T Consensus 55 ~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 55 IVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp BCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344455555444444444 45578899999999998753
No 67
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=33.49 E-value=27 Score=19.58 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=23.8
Q ss_pred HhcC-CCHHHHHHHhCCCCCCCHHHHHHHHHhchh
Q 046604 96 RIKN-KSVEYIRKFFGIENNFMPEEKEATRKEYEL 129 (134)
Q Consensus 96 ~i~g-ks~eeir~~f~i~~d~t~eee~~i~~e~~w 129 (134)
...| -+.++||+.-+- .|+|++|-.+|. ++||
T Consensus 14 W~~GT~~~~~mR~AV~~-G~iTQ~E~D~I~-~ypw 46 (51)
T 2xf7_A 14 WLDGTASEELLRVAVNA-GDLTQEEADKIM-SYPW 46 (51)
T ss_dssp HHHTCCCHHHHHHHHHH-TSSCHHHHHHHH-TSCT
T ss_pred HhcchhhHHHHHHHHhc-CcccHHHHHHHH-hCcc
Confidence 4556 578889987653 479999988884 5777
No 68
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=31.45 E-value=34 Score=19.36 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=17.1
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 046604 91 ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~ 110 (134)
..||..+.|+|+.++|..+.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 32 KFLASHFPNRTDQQCQYRWL 51 (60)
T ss_dssp HHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHH
Confidence 67888889999999998764
No 69
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=31.33 E-value=53 Score=22.44 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCCHHHHHH--------HhCCCCCCCHH
Q 046604 90 AETLANRIKNKSVEYIRK--------FFGIENNFMPE 118 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~--------~f~i~~d~t~e 118 (134)
+..+...+.|+||+||.+ .+|+...+||-
T Consensus 85 ~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 121 (141)
T 3g0m_A 85 MAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPS 121 (141)
T ss_dssp HHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCHH
T ss_pred HHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 344455568999999986 45677777763
No 70
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=31.24 E-value=20 Score=26.29 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=11.9
Q ss_pred hHHHHHHHHhcCCC
Q 046604 43 LPYIIKFCKAHGVS 56 (134)
Q Consensus 43 L~~Iie~c~~h~~~ 56 (134)
-..|+.||+||+-.
T Consensus 31 ~~LIL~ycr~~ki~ 44 (202)
T 1xb4_A 31 IDIISQYCKTKKIW 44 (202)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCee
Confidence 56799999999865
No 71
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=30.83 E-value=55 Score=22.72 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=24.8
Q ss_pred HHHhhccccchhHHHHHH-HHHHHHhcCCCHHHHHHHhC
Q 046604 73 MLLVADYLTIKDTLDYLA-ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 73 Li~AA~yL~I~~Ll~l~~-~~iA~~i~gks~eeir~~f~ 110 (134)
.|..+.|-.-=.-...+| -.++.+++|||.+|.++...
T Consensus 54 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 54 KIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp SEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344455544444444444 45578899999999998754
No 72
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=30.28 E-value=42 Score=20.37 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 046604 90 AETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~~f~ 110 (134)
=..||..+ |.|..++|..|.
T Consensus 45 W~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 45 WATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp HHHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHH
Confidence 36788889 999999999875
No 73
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=29.83 E-value=25 Score=21.83 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCC-----CHHHHHHHhCCC
Q 046604 64 GKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNK-----SVEYIRKFFGIE 112 (134)
Q Consensus 64 ~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gk-----s~eeir~~f~i~ 112 (134)
.++.+..-.+....+.|..+.+.+-..+.+++.-.|+ +.+|+++.+|+.
T Consensus 37 l~s~e~y~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 37 LMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp EEEHHHHHHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred eeeHHHHhhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 3356666666667777878888887778887666665 458999999985
No 74
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=28.98 E-value=25 Score=19.31 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=16.5
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 046604 91 ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~ 110 (134)
..||..+.|+|..++|..+.
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 27 SVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57788888999999998763
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=28.79 E-value=36 Score=26.49 Aligned_cols=42 Identities=10% Similarity=0.253 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhC
Q 046604 64 GKSNDELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 64 ~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~ 110 (134)
.++.......+.|+--.+-.. ...||..+.|||++|+++++.
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~-----~~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDD-----IDNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTC-----HHHHTTSSTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHH-----HHHHHHHhcCCCHHHHHHHHH
Confidence 356777777788755555443 246777778999999999765
No 76
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=28.42 E-value=13 Score=26.20 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=14.3
Q ss_pred CCCHHHHHHHhCC-CCCC
Q 046604 99 NKSVEYIRKFFGI-ENNF 115 (134)
Q Consensus 99 gks~eeir~~f~i-~~d~ 115 (134)
|-..+++|+.||| ++++
T Consensus 165 ~~~~~~v~~~L~l~p~~~ 182 (212)
T 3ge6_A 165 GYEKDQIAEAFGMEKDRY 182 (212)
T ss_dssp CSCHHHHHHHTTCCSSSE
T ss_pred ccCHHHHHHHhCCCCCCc
Confidence 5679999999999 7764
No 77
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=27.86 E-value=39 Score=23.59 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=23.2
Q ss_pred HHhhccccchhHHHHH-HHHHHHHhcCCCHHHHHHHhC
Q 046604 74 LLVADYLTIKDTLDYL-AETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 74 i~AA~yL~I~~Ll~l~-~~~iA~~i~gks~eeir~~f~ 110 (134)
|..+.|-.-=.-...+ +-.++.+++|||.+|.++..+
T Consensus 53 I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 53 IEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp EEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 4444444443333444 455688899999999987644
No 78
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.53 E-value=43 Score=19.34 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=15.7
Q ss_pred HHHHHHhcCCCHHHHHHHhC
Q 046604 91 ETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~ 110 (134)
..||. +.|+|+.++|..|.
T Consensus 32 ~~Ia~-~~gRt~~qcr~Rw~ 50 (66)
T 2din_A 32 RTIAP-IIGRTAAQCLEHYE 50 (66)
T ss_dssp HHHHH-HHSSCHHHHHHHHH
T ss_pred HHHhc-ccCcCHHHHHHHHH
Confidence 67888 67999999998764
No 79
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.42 E-value=45 Score=19.51 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=21.7
Q ss_pred HHHHHHhcCCCHHHHHHHhC------CCC-CCCHHH
Q 046604 91 ETLANRIKNKSVEYIRKFFG------IEN-NFMPEE 119 (134)
Q Consensus 91 ~~iA~~i~gks~eeir~~f~------i~~-d~t~ee 119 (134)
..||..+.|+|+.++|..+. |.. .+|+||
T Consensus 33 ~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 33 SRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 67888899999999999763 222 467665
No 80
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=27.15 E-value=24 Score=25.21 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=12.1
Q ss_pred hHHHHHHHHhcCCC
Q 046604 43 LPYIIKFCKAHGVS 56 (134)
Q Consensus 43 L~~Iie~c~~h~~~ 56 (134)
=..|+.||+||+-.
T Consensus 34 ~~LIl~ycr~~k~~ 47 (176)
T 3cuq_C 34 CSLVLSFCRLHKQS 47 (176)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCee
Confidence 56799999999976
No 81
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=26.26 E-value=45 Score=25.01 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 046604 90 AETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~~f~ 110 (134)
-..||..+.+||+.++|.+|.
T Consensus 155 W~~IAk~VgTKT~~QcKnfY~ 175 (235)
T 2iw5_B 155 FQAISDVIGNKSVVQVKNFFV 175 (235)
T ss_dssp HHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 568899999999999999775
No 82
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=26.18 E-value=19 Score=24.92 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.2
Q ss_pred CCCHHHHHHHhCCCCCC
Q 046604 99 NKSVEYIRKFFGIENNF 115 (134)
Q Consensus 99 gks~eeir~~f~i~~d~ 115 (134)
|-..+++++.|||+++.
T Consensus 159 ~~~~~~v~~~l~lp~~~ 175 (205)
T 1nox_A 159 GFDPERVRAILGLPSRA 175 (205)
T ss_dssp CSCHHHHHHHHTCCTTC
T ss_pred CCCHHHHHHHhCCCCCC
Confidence 45789999999999764
No 83
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=26.14 E-value=65 Score=17.90 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCCHHHHHHH
Q 046604 89 LAETLANRIKNKSVEYIRKF 108 (134)
Q Consensus 89 ~~~~iA~~i~gks~eeir~~ 108 (134)
-++.++.+++.+.|++++..
T Consensus 9 kSk~L~~Ll~s~~P~Dlq~A 28 (45)
T 1j2j_B 9 KSKMLARLLKSSHPEDLRAA 28 (45)
T ss_dssp HHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCChhhHHHH
Confidence 46788999999999988753
No 84
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=25.91 E-value=33 Score=25.92 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=19.8
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHH
Q 046604 100 KSVEYIRKFFGIENNFMPEEKEAT 123 (134)
Q Consensus 100 ks~eeir~~f~i~~d~t~eee~~i 123 (134)
-||+|+|+..++--||.+|+-.++
T Consensus 238 Ls~~E~r~il~lRvDf~~e~I~~l 261 (263)
T 3hr0_A 238 LTPAEVRQVLALRIDFRSEDIKRL 261 (263)
T ss_dssp SCHHHHHHHHTTBTTSCHHHHHHC
T ss_pred CCHHHHHHHHHhhccCCHHHHHhc
Confidence 588999999998888888876654
No 85
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=24.66 E-value=44 Score=17.16 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=6.7
Q ss_pred CHHHHHHHHHh
Q 046604 116 MPEEKEATRKE 126 (134)
Q Consensus 116 t~eee~~i~~e 126 (134)
||||..++++|
T Consensus 13 tpeelkklkee 23 (36)
T 2ki0_A 13 TPEELKKLKEE 23 (36)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 56666666555
No 86
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=24.38 E-value=58 Score=21.22 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 046604 90 AETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~~f~ 110 (134)
++.||+.|+|++.++-..++.
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~ 33 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLE 33 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 357899999999988877765
No 87
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=24.17 E-value=39 Score=19.12 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=11.7
Q ss_pred HHHHHHHHHhchhhhh
Q 046604 117 PEEKEATRKEYELLRL 132 (134)
Q Consensus 117 ~eee~~i~~e~~w~~~ 132 (134)
...-.++++||||+-.
T Consensus 27 kk~iKklEdeNPWLGN 42 (50)
T 1a92_A 27 KKKIKKLEEDNPWLGN 42 (50)
T ss_dssp HHHHHHHHHHCTTHHH
T ss_pred HHHHHhhhccCCchhh
Confidence 3456778889999754
No 88
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.76 E-value=83 Score=17.99 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=16.1
Q ss_pred HHHHhcCCCHHHHHHHhCCCC
Q 046604 93 LANRIKNKSVEYIRKFFGIEN 113 (134)
Q Consensus 93 iA~~i~gks~eeir~~f~i~~ 113 (134)
+.-...|+|..||-+.+|++.
T Consensus 25 l~l~~~g~s~~eIA~~l~is~ 45 (79)
T 1x3u_A 25 LSAVVAGLPNKSIAYDLDISP 45 (79)
T ss_dssp HHHHTTTCCHHHHHHHTTSCH
T ss_pred HHHHHcCCCHHHHHHHHCcCH
Confidence 333467999999999999864
No 89
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=23.52 E-value=40 Score=19.64 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=13.5
Q ss_pred cCCCHHHHHHHhCCCCC
Q 046604 98 KNKSVEYIRKFFGIENN 114 (134)
Q Consensus 98 ~gks~eeir~~f~i~~d 114 (134)
-|.|.+|||+++.....
T Consensus 25 lGlsleEIrefL~l~~~ 41 (57)
T 1b0n_B 25 ANISPEEIRKYLLLNKK 41 (57)
T ss_dssp TTCCHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHHHhcc
Confidence 49999999999987753
No 90
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Probab=23.35 E-value=28 Score=24.54 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=14.2
Q ss_pred CCCHHHHHHHhCCCCCC
Q 046604 99 NKSVEYIRKFFGIENNF 115 (134)
Q Consensus 99 gks~eeir~~f~i~~d~ 115 (134)
+-..+++|+.|||+++.
T Consensus 157 ~~~~~~v~~~L~lp~~~ 173 (208)
T 4dn2_A 157 VFDEQQLGELLGIPAEL 173 (208)
T ss_dssp CCCHHHHHHHHTCCTTC
T ss_pred ccCHHHHHHHhCcCCCc
Confidence 45789999999998764
No 91
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=23.31 E-value=34 Score=23.61 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=14.7
Q ss_pred cCCCHHHHHHHhCCCCCC
Q 046604 98 KNKSVEYIRKFFGIENNF 115 (134)
Q Consensus 98 ~gks~eeir~~f~i~~d~ 115 (134)
.|-..+++++.|||+++.
T Consensus 157 ~~~~~~~v~~~l~lp~~~ 174 (204)
T 2b67_A 157 LGFDKSKVNEVLEIEDRF 174 (204)
T ss_dssp CCBCHHHHHHHHTCCTTE
T ss_pred cccCHHHHHHHhCCCCCC
Confidence 356789999999999764
No 92
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=23.18 E-value=9.1 Score=27.27 Aligned_cols=17 Identities=0% Similarity=0.200 Sum_probs=14.2
Q ss_pred hcCCCHHHHHHHhCCCC
Q 046604 97 IKNKSVEYIRKFFGIEN 113 (134)
Q Consensus 97 i~gks~eeir~~f~i~~ 113 (134)
+.|-.++.+|+.|||++
T Consensus 156 i~g~~~~~v~~~L~lp~ 172 (209)
T 3of4_A 156 MEGIEHDAYDNILSLKD 172 (209)
T ss_dssp BCCSCHHHHHHHTTHHH
T ss_pred ecccCHHHHHHHhCCCC
Confidence 34678999999999986
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=22.60 E-value=97 Score=19.80 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=13.8
Q ss_pred HHHHHHhc-----CCCHHHHHHHh
Q 046604 91 ETLANRIK-----NKSVEYIRKFF 109 (134)
Q Consensus 91 ~~iA~~i~-----gks~eeir~~f 109 (134)
-.|+++.. +.|+|+|+..|
T Consensus 53 ~vI~DRy~~~~~~~RtvEdLK~RY 76 (93)
T 4iej_A 53 VVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHHCCTTTSCCCCHHHHHHHH
T ss_pred EEEeeccccCCCCCCCHHHHHHHH
Confidence 36777764 57899998754
No 94
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=22.21 E-value=71 Score=26.19 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHhcCCCHHHHHHHhCCCCCCC-HHHHHHHHHhchhh
Q 046604 92 TLANRIKNKSVEYIRKFFGIENNFM-PEEKEATRKEYELL 130 (134)
Q Consensus 92 ~iA~~i~gks~eeir~~f~i~~d~t-~eee~~i~~e~~w~ 130 (134)
-|-..+.-||||||-+-+|+..|.+ .++..+.+-++.|-
T Consensus 254 gim~k~~hktpeeiyealgfn~de~qrq~~ak~~a~d~~~ 293 (505)
T 3few_X 254 GIMDKVDHKTPEEIYEALGFNNEEPQRQNQAKKAAYDVFY 293 (505)
T ss_dssp HHHHHTTCCCHHHHHHHHTTTTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhccCCHHHHHHHhCCCccchHHHHHHHHHHHHHHH
Confidence 4455778999999999999999864 44555566666663
No 95
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=22.20 E-value=66 Score=20.94 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCHHHHHHHhCC
Q 046604 90 AETLANRIKNKSVEYIRKFFGI 111 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~~f~i 111 (134)
++.||+.|+|++.++-..++.-
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~~ 38 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILRY 38 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 4578999999999887776543
No 96
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=22.17 E-value=81 Score=20.98 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHhCCCC
Q 046604 83 KDTLDYLAETLANRIKNKSVEYIRKFFGIEN 113 (134)
Q Consensus 83 ~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~ 113 (134)
+.+.+-.|..+| .|.|..+|.+.+|+|.
T Consensus 15 ~e~~e~I~~~i~---~G~sl~~i~~~~~~ps 42 (140)
T 4dyq_A 15 PEVADDICSLLS---SGESLLKVCKRPGMPD 42 (140)
T ss_dssp TTHHHHHHHHHH---TTCCHHHHHTSTTCCC
T ss_pred HHHHHHHHHHHH---CCCcHHHHHhcCCCCC
Confidence 345566666666 6999999999999974
No 97
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=22.05 E-value=53 Score=22.85 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=21.5
Q ss_pred HHhhccccchhHHHHHH-HHHHHHhcCCCHHHHHHH
Q 046604 74 LLVADYLTIKDTLDYLA-ETLANRIKNKSVEYIRKF 108 (134)
Q Consensus 74 i~AA~yL~I~~Ll~l~~-~~iA~~i~gks~eeir~~ 108 (134)
|..+.|-.-=.-...+| -.++.+++|||.+|.++.
T Consensus 48 I~D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i 83 (153)
T 4eb5_C 48 IEDIKFQTFGCAAAIATSSMATEMAKGKTIEEALKI 83 (153)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTC
T ss_pred EEEEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 44444444444444444 455788999999888753
No 98
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=22.03 E-value=18 Score=25.23 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=14.6
Q ss_pred cCCCHHHHHHHhCCC-CCC
Q 046604 98 KNKSVEYIRKFFGIE-NNF 115 (134)
Q Consensus 98 ~gks~eeir~~f~i~-~d~ 115 (134)
.|-..+++++.|||+ ++.
T Consensus 165 ~~~~~~~v~~~l~lp~~~~ 183 (218)
T 1vfr_A 165 EGIDPELLSEIFADELKGY 183 (218)
T ss_dssp CCSCHHHHHHHTTTTTTTE
T ss_pred cccCHHHHHHHhCCCcccc
Confidence 356789999999999 663
No 99
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=22.01 E-value=25 Score=24.83 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=14.2
Q ss_pred CCCHHHHHHHhCCCCCC
Q 046604 99 NKSVEYIRKFFGIENNF 115 (134)
Q Consensus 99 gks~eeir~~f~i~~d~ 115 (134)
|-..+++++.|||+++.
T Consensus 170 ~~~~~~v~~~L~lp~~~ 186 (218)
T 3bem_A 170 GFDAEAVKRILNIDDQF 186 (218)
T ss_dssp CSCHHHHHHHHTCCTTE
T ss_pred CcCHHHHHHHhCCCCCc
Confidence 45789999999999764
No 100
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=21.49 E-value=26 Score=24.57 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=23.1
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 046604 71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115 (134)
Q Consensus 71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~ 115 (134)
-.|+.||..|++-.- .+.|-..+++|+.|||+++.
T Consensus 120 ~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~l~lp~~~ 154 (191)
T 3h4o_A 120 DHMMLQATELGLASV----------WVCYFNPDIIREEFSLPDNL 154 (191)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHCCCCEE----------EEcccCHHHHHHHhCcCCCc
Confidence 455555555555442 23356789999999998764
No 101
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.42 E-value=71 Score=17.36 Aligned_cols=18 Identities=11% Similarity=-0.132 Sum_probs=14.5
Q ss_pred HhcCCCHHHHHHHhCCCC
Q 046604 96 RIKNKSVEYIRKFFGIEN 113 (134)
Q Consensus 96 ~i~gks~eeir~~f~i~~ 113 (134)
...|.|..||-+.+|++.
T Consensus 10 ~~~g~s~~eIA~~l~is~ 27 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISI 27 (61)
T ss_dssp HHTSCCSHHHHHHTCSCH
T ss_pred HHcCCCHHHHHHHhCCCH
Confidence 357899999999998864
No 102
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.19 E-value=98 Score=18.33 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=13.9
Q ss_pred HhcCCCHHHHHHHhCCCC
Q 046604 96 RIKNKSVEYIRKFFGIEN 113 (134)
Q Consensus 96 ~i~gks~eeir~~f~i~~ 113 (134)
...|+|..||-+.+|++.
T Consensus 33 ~~~g~s~~eIA~~l~is~ 50 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITE 50 (82)
T ss_dssp HTTTCCHHHHHHHHTSCH
T ss_pred HHcCCCHHHHHHHHCcCH
Confidence 357888888888888864
No 103
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=20.94 E-value=47 Score=20.57 Aligned_cols=14 Identities=21% Similarity=0.781 Sum_probs=12.0
Q ss_pred hHHHHHHHHhcCCC
Q 046604 43 LPYIIKFCKAHGVS 56 (134)
Q Consensus 43 L~~Iie~c~~h~~~ 56 (134)
..+|++||+.|...
T Consensus 51 ~Pkvie~Ckk~P~~ 64 (79)
T 2xuv_A 51 IPXVIEYCXXNPQX 64 (79)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred ccHHHHHHhcCCcc
Confidence 67899999999854
No 104
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}
Probab=20.61 E-value=23 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=22.6
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 046604 71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115 (134)
Q Consensus 71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~ 115 (134)
-.++.||..+++-.- .+.|-..+++|+.|||+++.
T Consensus 129 ~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~L~lp~~~ 163 (198)
T 3ge5_A 129 TYMMLEAHSLGLGCT----------WVCAFDQALCSEIFDIPSHM 163 (198)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHCCCCEE----------EECccCHHHHHHHhCcCCCc
Confidence 345555555555431 22356789999999998764
No 105
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=20.60 E-value=34 Score=23.02 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=36.0
Q ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHH------HhCCCCCCCHHHHHHHH
Q 046604 68 DELKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRK------FFGIENNFMPEEKEATR 124 (134)
Q Consensus 68 ~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~------~f~i~~d~t~eee~~i~ 124 (134)
.....++.|-.-++= ..+..+|++.++|+..+.|++ .||+-.|++..+.+.+-
T Consensus 16 ~~AqkiLs~V~r~~~----rfG~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~~li 74 (134)
T 3aaf_A 16 PQAFKLLSAVDILGE----KFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFS 74 (134)
T ss_dssp HHHHHHHHHHHHTTT----CSCTHHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----cccccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHHHHH
Confidence 344455555544432 245668888889987666655 78999999998887753
No 106
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=20.54 E-value=42 Score=23.34 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=25.1
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 046604 70 LKEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115 (134)
Q Consensus 70 l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~ 115 (134)
+..|+.||..|++-.- .+.|-..+++++.|||+++.
T Consensus 118 ~~nl~LaA~~~Glgs~----------~~~~~~~~~~~~~l~lp~~~ 153 (200)
T 2fre_A 118 WFSLAMQAHLLGYHAH----------GMGGIFKDRIVEKLDIPDGF 153 (200)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCBCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHHCCccee----------eEcccCHHHHHHHcCCCCCc
Confidence 4566666776666541 23466789999999999763
No 107
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=20.37 E-value=75 Score=20.64 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCHHHHHHHhC
Q 046604 90 AETLANRIKNKSVEYIRKFFG 110 (134)
Q Consensus 90 ~~~iA~~i~gks~eeir~~f~ 110 (134)
++.||+.|+|++.++-..++.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILT 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHh
Confidence 357899999999988777665
No 108
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=20.30 E-value=70 Score=25.63 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCChHHHHHHHHhhccccchhHHHHHHHHHHHHhc-CCCHHHHHHHhC
Q 046604 64 GKSNDELKEMLLVADYLTIKDTLDYLAETLANRIK-NKSVEYIRKFFG 110 (134)
Q Consensus 64 ~~~~~~l~~Li~AA~yL~I~~Ll~l~~~~iA~~i~-gks~eeir~~f~ 110 (134)
.++......++.|+--.+-.. ...||.-+. |||++||+.|+.
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d-----~~~IA~ev~~~Kt~eEV~~Y~~ 167 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNS-----IQAIARELAPGKTLEEVRAYAK 167 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTC-----HHHHHSSCCCSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhH-----HHHHHHHHccCCCHHHHHHHHH
Confidence 346666777777766555433 346666777 899999999764
No 109
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A*
Probab=20.02 E-value=23 Score=25.24 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=22.8
Q ss_pred HHHHHhhccccchhHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 046604 71 KEMLLVADYLTIKDTLDYLAETLANRIKNKSVEYIRKFFGIENNF 115 (134)
Q Consensus 71 ~~Li~AA~yL~I~~Ll~l~~~~iA~~i~gks~eeir~~f~i~~d~ 115 (134)
-.|+.||..|++-. ..+.|-..+++++.|||+++.
T Consensus 153 ~nl~LaA~~lGlgs----------~~~~~~~~~~v~~~L~lp~~~ 187 (230)
T 2isk_A 153 QNLWLAARAEGVGV----------GWVSIFHESEIKAILGIPDHV 187 (230)
T ss_dssp HHHHHHHHHHTEEE----------EECCCSCHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHCCCce----------eeecccCHHHHHHHhCCCCCc
Confidence 45555555555543 123356789999999998763
Done!