BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046605
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/471 (29%), Positives = 212/471 (45%), Gaps = 40/471 (8%)
Query: 9 HIFFFPFLAHGHMIPTVDMAK-LFTTRGVKAS-VITTPGNAPHLSRSIQKASELGIELDV 66
H+ P GH+IP V+ AK L G+ + VI G R++ + + +
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDS----LPSSI 63
Query: 67 KIIKFPSAEAGLPEGWENLDAITNEVNRELIVKFYMATTXXXXXXXXXXXXHKPDCLVAD 126
+ P P +L + T +R + P LV D
Sbjct: 64 SSVFLP------PVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVD 117
Query: 127 MFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPHKKVSSDSEPFVMP-NLPGEI 185
+F A D A +F +P +F+ T+ L L L + + VS + P LPG +
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFF--LHLPKLDETVSCEFRELTEPLMLPGCV 175
Query: 186 KLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKALGRR 245
+ DPA QD D+ + + + + G++VN+F+ELE + KAL
Sbjct: 176 PVAGKDFLDPA-QDRKDDAYKWLLHNTKRYK-EAEGILVNTFFELE----PNAIKALQEP 229
Query: 246 AWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLM 305
PV KQ +E ECLKWL+++ SV+Y+ FGS T QL
Sbjct: 230 GLDKPPVYPVGPLVNIGKQEAKQ--TEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLN 287
Query: 306 EIAMGLEASGQNFIWVVRXXX--------XXXXXXXXXDWLPEGFEKRMEGKGLIIRGWA 357
E+A+GL S Q F+WV+R +LP GF +R + +G +I WA
Sbjct: 288 ELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWA 347
Query: 358 PQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVG 417
PQ +L H + GGF+THCGWNS LE V +G+PL+ WP+YAEQ N +++E ++ +
Sbjct: 348 PQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPR 407
Query: 418 IQKWCRIVGD--FVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVE 466
GD V+RE + + V +M G+ + +R++ K E A R ++
Sbjct: 408 -------AGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLK 451
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 144/488 (29%), Positives = 222/488 (45%), Gaps = 49/488 (10%)
Query: 9 HIFFFPFLAHGHMIPTVDMAKLFTTRG----VKASVITTPGNAPHLSRSIQKASELGIEL 64
+ F P GH+ ++ AKL T + I PG P I+ S L +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPG-MPFADSYIK--SVLASQP 67
Query: 65 DVKIIKFPSAEAGLPEGWENLDAITNEVNRELIVKFYMATTXXXXXXXXXXXXHKPDCLV 124
+++I P E P E L + I+ F + +K LV
Sbjct: 68 QIQLIDLPEVE---PPPQELLKS-----PEFYILTFLESLIPHVKATIKTILSNKVVGLV 119
Query: 125 ADMFFPWATDAAAKFGIPRLVF--HGTSFFSL-CAIKCLALYEPHKKVSSDSEPFVMPNL 181
D F D +FGIP +F F SL ++K + E D + +P +
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGI 179
Query: 182 PGEIKLTRNQLPDPA-KQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRK 240
++ N LPD +D G + + + D+ G++VN+F +LE + D
Sbjct: 180 SNQV--PSNVLPDACFNKDGGYIAYYKLAERFRDTK----GIIVNTFSDLEQSSID---- 229
Query: 241 ALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQEC-LKWLNSKQPNSVVYICFGSVA-N 298
AL I P+ + K + + + LKWL+ + SVV++CFGS+ +
Sbjct: 230 ALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVS 289
Query: 299 FTSAQLMEIAMGLEASGQNFIWVVRXXXXXXXXXXXXDWLPEGFEKRME--GKGLIIRGW 356
F +Q+ EIA+GL+ SG F+W PEGF + ME GKG+I GW
Sbjct: 290 FGPSQIREIALGLKHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGKGMIC-GW 339
Query: 357 APQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNE-KIVNEVLKIGIG 415
APQV +L H+A+GGFV+HCGWNSILE + GVP++TWP+YAEQ N ++V E G+G
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE---WGVG 396
Query: 416 VGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVEXXXXXXXXX 475
+G++ R D V E I K + ++M D+ + + + EM++ AV
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISV 454
Query: 476 XXXIEDLS 483
I+D++
Sbjct: 455 GKLIDDIT 462
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 144/488 (29%), Positives = 222/488 (45%), Gaps = 49/488 (10%)
Query: 9 HIFFFPFLAHGHMIPTVDMAKLFTTRG----VKASVITTPGNAPHLSRSIQKASELGIEL 64
+ F P GH+ ++ AKL T + I PG P I+ S L +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPG-MPFADSYIK--SVLASQP 67
Query: 65 DVKIIKFPSAEAGLPEGWENLDAITNEVNRELIVKFYMATTXXXXXXXXXXXXHKPDCLV 124
+++I P E P E L + I+ F + +K LV
Sbjct: 68 QIQLIDLPEVE---PPPQELLKS-----PEFYILTFLESLIPHVKATIKTILSNKVVGLV 119
Query: 125 ADMFFPWATDAAAKFGIPRLVF--HGTSFFSL-CAIKCLALYEPHKKVSSDSEPFVMPNL 181
D F D +FGIP +F F SL ++K + E D + +P +
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGI 179
Query: 182 PGEIKLTRNQLPDPA-KQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRK 240
++ N LPD +D G + + + D+ G++VN+F +LE + D
Sbjct: 180 SNQV--PSNVLPDACFNKDGGYIAYYKLAERFRDTK----GIIVNTFSDLEQSSID---- 229
Query: 241 ALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQEC-LKWLNSKQPNSVVYICFGSVA-N 298
AL I P+ + K + + + LKWL+ + SVV++CFGS+ +
Sbjct: 230 ALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVS 289
Query: 299 FTSAQLMEIAMGLEASGQNFIWVVRXXXXXXXXXXXXDWLPEGFEKRME--GKGLIIRGW 356
F +Q+ EIA+GL+ SG F+W PEGF + ME GKG+I GW
Sbjct: 290 FGPSQIREIALGLKHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGKGMIC-GW 339
Query: 357 APQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNE-KIVNEVLKIGIG 415
APQV +L H+A+GGFV+HCGWNSILE + GVP++TWP+YAEQ N ++V E G+G
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE---WGVG 396
Query: 416 VGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVEXXXXXXXXX 475
+G++ R D V E I K + ++M D+ + + + EM++ AV
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISV 454
Query: 476 XXXIEDLS 483
I+D++
Sbjct: 455 GKLIDDIT 462
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 209/492 (42%), Gaps = 32/492 (6%)
Query: 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKI 68
H+ P+ GH+ P +AKL RG + + T N L +S + G
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGF----TD 65
Query: 69 IKFPSAEAGLP--EGWENLDAITNEVNRELIVKFYMATTXXXXXXXXXXXXHKPDCLVAD 126
F S GL EG ++ + + + F CLV+D
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSD 125
Query: 127 MFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPHKKVSSDSEPFVMPN------ 180
+ AA +F +P +++ +S SL + + + E ++
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 181 --LPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHY 238
+PG + D + ++ F D + +++N+F ELE +
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINAL 245
Query: 239 RKALGRRAWHIGPV-SLCNRNFEDKALRGKQASV--DEQECLKWLNSKQPNSVVYICFGS 295
+ + IGP+ SL + + L +++ ++ ECL WL SK+P SVVY+ FGS
Sbjct: 246 SSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGS 304
Query: 296 VANFTSAQLMEIAMGLEASGQNFIWVVRXXXXXXXXXXXXDWLPEGFEKRMEGKGLIIRG 355
T QL+E A GL ++F+W++R F + +GLI
Sbjct: 305 TTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI----FSSEFTNEIADRGLI-AS 359
Query: 356 WAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIG 415
W PQ +L+H ++GGF+THCGWNS E + AGVP++ WP +A+Q + + + +IG+
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 416 VGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVEXXXXXXXXX 475
+ VKRE + K +NE++ GD+ ++M+ +A + A+
Sbjct: 420 IDTN---------VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNL 470
Query: 476 XXXIEDLSLRRH 487
I+D+ L+++
Sbjct: 471 NKVIKDVLLKQN 482
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 170/346 (49%), Gaps = 29/346 (8%)
Query: 122 CLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPHKKVS--SDSEPFVMP 179
CLVAD F +A D AA+ G+ L F SL + VS E ++
Sbjct: 115 CLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLN 174
Query: 180 NLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYR 239
+PG K+ L + ++ FSR + ++ V +NSF EL+ + + +
Sbjct: 175 FIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLK 234
Query: 240 KALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANF 299
L + +IGP +L + + CL+WL ++P SVVYI FG+V
Sbjct: 235 SKL-KTYLNIGPFNL---------ITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTP 284
Query: 300 TSAQLMEIAMGLEASGQNFIWVVRXXXXXXXXXXXXDWLPEGFEKRMEGKGLIIRGWAPQ 359
A+++ ++ LEAS FIW +R LPEGF ++ G G+++ WAPQ
Sbjct: 285 PPAEVVALSEALEASRVPFIWSLRDKARVH--------LPEGFLEKTRGYGMVVP-WAPQ 335
Query: 360 VLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQ 419
+L HEAVG FVTHCGWNS+ E V GVPL+ P + +Q N ++V +VL+IG+
Sbjct: 336 AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGV----- 390
Query: 420 KWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAV 465
RI G + ++ ++I+ ++ +++R +A E A RAV
Sbjct: 391 ---RIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAV 433
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 162/348 (46%), Gaps = 34/348 (9%)
Query: 122 CLVADMFFPWATDAAAKFG---IPRLVFHGTSFFSLCAIKCLALYEPHKKVSSDSEPFVM 178
CLV D FF + D A + +P S + + K+V V+
Sbjct: 120 CLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVL 179
Query: 179 PNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHY 238
P P +L + LP+ +D+ D F+ + R+ V +NSF + H ++
Sbjct: 180 PGFP---ELKASDLPEGVIKDI-DVPFATMLHKMGLELPRANAVAINSFATI-HPLIENE 234
Query: 239 RKALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVAN 298
+ + ++GP +L ++ DE CL+WL+ + +SVVYI FGSV
Sbjct: 235 LNSKFKLLLNVGPFNLTTP---------QRKVSDEHGCLEWLDQHENSSVVYISFGSVVT 285
Query: 299 FTSAQLMEIAMGLEASGQNFIWVVRXXXXXXXXXXXXDWLPEGFEKRMEGKGLIIRGWAP 358
+L +A LE G FIW R + LP+GF +R + KG I+ WAP
Sbjct: 286 PPPHELTALAESLEECGFPFIWSFRGDPK--------EKLPKGFLERTKTKGKIV-AWAP 336
Query: 359 QVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGI 418
QV IL H +VG F+TH GWNS+LE + GVP+++ P + +Q N + VL+IG+GV
Sbjct: 337 QVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD- 395
Query: 419 QKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVE 466
+ +E+I KA+ M ++ MR + E A +AVE
Sbjct: 396 -------NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVE 436
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 274 QECLKWLNSKQPNSVVYICFGS-VANFTSAQLMEIAMGLEASGQNFIWVVRXXXXXXXXX 332
+E ++ S N VV GS V+N T + IA L Q +W
Sbjct: 9 KEXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF---------- 58
Query: 333 XXXDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVT 392
+G + G + W PQ +L H F+TH G N I E + G+P V
Sbjct: 59 -------DGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVG 111
Query: 393 WPVYAEQ 399
P++A+Q
Sbjct: 112 IPLFADQ 118
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 353 IRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKI 412
+ W PQ+ IL + F+TH G S +E ++ VP+V P AEQ N + ++++
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAE---RIVEL 363
Query: 413 GIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMR 451
G+G I + ++ + + REA++ ++ + +R +R
Sbjct: 364 GLGRHIPR-DQVTAEKL-REAVLAVASDPGVAERLAAVR 400
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 2 ASGICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELG 61
++ + HI FF HGH+ P++ + + RG + S T + ++ A
Sbjct: 7 SASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAIT----DEFAAQVKAAGATP 62
Query: 62 IELDVKIIKFPSAEAGLPEGWEN 84
+ D + K + E PE E+
Sbjct: 63 VVYDSILPKESNPEESWPEDQES 85
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 353 IRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKI 412
+ W PQ+ IL + FVTH G EG+ P++ P +QF N ++
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ----- 339
Query: 413 GIGVG 417
G+GV
Sbjct: 340 GLGVA 344
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 1 MASGICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44
M + HI F AHGH+ P++++ + RG + + P
Sbjct: 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPP 44
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44
Q HI F HGH+ P++ + RG + + +TTP
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTP 41
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 356 WAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIG 415
W P +L H +TH ++LE AGVPLV P +A + V+++G+G
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATE--AAPSAERVIELGLG 343
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 256 NRNFE----DKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQ 303
N NFE D + R KQ +E L+ N+ QP+++VY+ S+ AQ
Sbjct: 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ 232
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 356 WAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIG 415
W P V +L+ V VTH G ++ E + G PLV P + F + V ++G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP---QSFDVQPXARRVDQLGLG 358
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 356 WAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIG 415
W P V +L+ V VTH G ++ E + G PLV P + F + V ++G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVP---QSFDVQPXARRVDQLGLG 358
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 353 IRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQF 400
+ W PQ +L H V V H G + L + AGVP +++P + F
Sbjct: 296 LESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 337 WLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGV----PLVT 392
W GFE E + W ++ H HC E VTAGV V
Sbjct: 225 WTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGVIDGPQSVV 284
Query: 393 WPVYAEQFYNEKIVNEVLKIG 413
W + + +K + E L +G
Sbjct: 285 WDEAENRLHVQKALMEFLLLG 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,399,578
Number of Sequences: 62578
Number of extensions: 533277
Number of successful extensions: 1177
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 31
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)