Query 046605
Match_columns 487
No_of_seqs 138 out of 1266
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 02:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 9E-67 1.9E-71 517.6 46.3 473 5-485 6-487 (491)
2 PLN03007 UDP-glucosyltransfera 100.0 2.9E-65 6.2E-70 512.9 47.9 473 6-485 4-481 (482)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.3E-65 4.9E-70 508.9 46.3 459 5-485 7-472 (477)
4 PLN02208 glycosyltransferase f 100.0 2.1E-63 4.6E-68 490.2 44.3 435 6-485 3-440 (442)
5 PLN02992 coniferyl-alcohol glu 100.0 2.1E-63 4.6E-68 491.5 43.7 441 6-484 4-469 (481)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.7E-63 8E-68 489.7 45.4 437 1-484 1-450 (451)
7 PLN02210 UDP-glucosyl transfer 100.0 1.1E-62 2.3E-67 488.4 44.8 440 5-483 6-454 (456)
8 PLN02555 limonoid glucosyltran 100.0 1.4E-62 3.1E-67 487.1 45.1 457 1-484 1-469 (480)
9 PLN02207 UDP-glycosyltransfera 100.0 2.3E-62 5E-67 483.3 44.4 453 5-484 1-465 (468)
10 PLN02173 UDP-glucosyl transfer 100.0 3.2E-62 6.8E-67 480.6 44.8 434 5-483 3-447 (449)
11 PLN02764 glycosyltransferase f 100.0 4.4E-62 9.5E-67 477.8 45.6 438 5-484 3-445 (453)
12 PLN02670 transferase, transfer 100.0 6.1E-62 1.3E-66 480.8 44.2 458 5-485 4-466 (472)
13 PLN00164 glucosyltransferase; 100.0 8.4E-62 1.8E-66 485.1 45.5 450 5-486 1-475 (480)
14 PLN03015 UDP-glucosyl transfer 100.0 1.1E-61 2.5E-66 476.2 44.1 444 5-483 1-467 (470)
15 PLN02562 UDP-glycosyltransfera 100.0 3.3E-61 7.1E-66 477.4 44.8 428 6-483 5-448 (448)
16 PLN00414 glycosyltransferase f 100.0 7.7E-61 1.7E-65 472.5 44.0 433 6-484 3-440 (446)
17 PLN03004 UDP-glycosyltransfera 100.0 3E-61 6.4E-66 474.0 40.3 435 7-473 3-450 (451)
18 PLN02448 UDP-glycosyltransfera 100.0 9.3E-61 2E-65 478.0 43.7 441 3-486 6-459 (459)
19 PLN02152 indole-3-acetate beta 100.0 1.4E-60 2.9E-65 469.8 43.1 442 6-483 2-455 (455)
20 PLN02554 UDP-glycosyltransfera 100.0 5E-60 1.1E-64 474.3 44.6 449 7-484 2-478 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 1.7E-59 3.7E-64 469.8 43.7 458 5-486 1-474 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.3E-50 5.1E-55 405.5 28.9 413 6-485 19-467 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 5.1E-51 1.1E-55 418.0 1.3 384 9-463 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 7.5E-45 1.6E-49 360.9 26.5 386 13-483 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3.6E-43 7.8E-48 350.5 26.9 387 8-481 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 2.4E-43 5.3E-48 345.4 18.2 391 7-485 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2E-40 4.4E-45 339.8 15.8 401 7-462 5-437 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.7E-25 3.6E-30 216.8 26.6 323 7-456 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 2.7E-25 5.9E-30 214.7 21.7 309 8-441 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1E-21 2.2E-26 187.9 28.7 312 8-443 1-323 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 4.8E-22 1E-26 191.6 20.9 309 9-451 1-318 (321)
32 PRK00726 murG undecaprenyldiph 99.8 4.2E-18 9.1E-23 167.3 30.7 327 7-462 1-339 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.2E-16 2.6E-21 156.7 27.5 323 9-456 1-333 (350)
34 TIGR01133 murG undecaprenyldip 99.7 2.8E-15 6E-20 146.8 28.1 317 8-456 1-330 (348)
35 COG4671 Predicted glycosyl tra 99.7 1.5E-15 3.3E-20 138.4 20.3 344 5-443 7-364 (400)
36 TIGR00215 lpxB lipid-A-disacch 99.7 6.5E-15 1.4E-19 145.0 24.8 346 8-475 6-379 (385)
37 PRK13609 diacylglycerol glucos 99.7 1.1E-14 2.4E-19 144.2 24.9 141 285-455 201-346 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 4.7E-15 1E-19 139.3 20.9 105 286-405 170-278 (279)
39 PRK13608 diacylglycerol glucos 99.6 2E-13 4.4E-18 135.2 24.6 132 285-443 201-337 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 6.4E-13 1.4E-17 131.7 25.5 352 7-484 1-376 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 1.3E-16 2.8E-21 138.6 -3.1 135 288-443 1-143 (167)
42 PLN02605 monogalactosyldiacylg 99.5 2E-11 4.3E-16 120.8 27.9 141 275-443 195-346 (382)
43 TIGR03492 conserved hypothetic 99.5 4.1E-11 8.9E-16 118.2 27.2 142 285-455 204-372 (396)
44 COG3980 spsG Spore coat polysa 99.4 2.2E-11 4.8E-16 108.1 16.9 146 286-459 158-305 (318)
45 PF03033 Glyco_transf_28: Glyc 99.4 2.6E-13 5.5E-18 114.1 4.3 122 10-152 1-133 (139)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 1.4E-08 3E-13 103.3 34.6 131 288-452 264-405 (465)
47 cd03814 GT1_like_2 This family 99.3 1.6E-08 3.4E-13 99.1 31.5 110 348-481 246-362 (364)
48 cd03823 GT1_ExpE7_like This fa 99.2 3.2E-08 6.9E-13 96.7 29.5 129 285-443 189-328 (359)
49 cd03808 GT1_cap1E_like This fa 99.2 5.4E-08 1.2E-12 94.8 29.2 141 285-452 186-334 (359)
50 cd03794 GT1_wbuB_like This fam 99.1 4.7E-08 1E-12 96.5 28.1 137 286-454 219-372 (394)
51 cd03816 GT1_ALG1_like This fam 99.1 7.3E-08 1.6E-12 96.5 29.5 121 6-146 2-127 (415)
52 cd04962 GT1_like_5 This family 99.1 4.6E-08 1E-12 96.5 27.7 129 287-443 197-335 (371)
53 cd03800 GT1_Sucrose_synthase T 99.1 1.6E-07 3.4E-12 93.6 29.0 132 287-443 220-367 (398)
54 cd03817 GT1_UGDG_like This fam 99.1 4.2E-07 9.1E-12 89.2 30.6 78 348-443 258-342 (374)
55 PRK10307 putative glycosyl tra 99.1 2.9E-07 6.2E-12 92.3 29.4 161 287-482 229-405 (412)
56 cd03801 GT1_YqgM_like This fam 99.1 4.8E-07 1E-11 88.3 30.5 85 348-452 255-346 (374)
57 cd03818 GT1_ExpC_like This fam 99.0 2.6E-07 5.7E-12 92.1 28.4 81 348-443 280-365 (396)
58 PF04007 DUF354: Protein of un 99.0 6.6E-07 1.4E-11 85.2 26.7 298 8-442 1-308 (335)
59 PRK05749 3-deoxy-D-manno-octul 99.0 5.8E-07 1.3E-11 90.5 28.1 86 351-454 304-395 (425)
60 cd03798 GT1_wlbH_like This fam 99.0 1.8E-06 3.9E-11 84.5 30.4 133 286-443 201-343 (377)
61 PRK14089 ipid-A-disaccharide s 98.9 1.8E-07 3.8E-12 89.9 21.4 168 286-481 167-346 (347)
62 cd03820 GT1_amsD_like This fam 98.9 1.1E-06 2.3E-11 85.2 27.1 91 348-458 234-330 (348)
63 cd03795 GT1_like_4 This family 98.9 1.7E-06 3.7E-11 84.6 26.3 128 287-443 191-331 (357)
64 TIGR00236 wecB UDP-N-acetylglu 98.9 1.2E-07 2.6E-12 93.4 17.7 137 286-455 197-342 (365)
65 cd03825 GT1_wcfI_like This fam 98.8 4.4E-06 9.6E-11 82.0 28.3 112 348-482 243-362 (365)
66 cd03805 GT1_ALG2_like This fam 98.8 6.3E-06 1.4E-10 82.0 28.7 78 348-443 279-363 (392)
67 cd03821 GT1_Bme6_like This fam 98.8 1E-05 2.2E-10 79.2 29.7 79 348-443 261-344 (375)
68 PRK09922 UDP-D-galactose:(gluc 98.8 3E-06 6.5E-11 83.3 24.9 149 287-460 180-343 (359)
69 cd03799 GT1_amsK_like This is 98.8 7.2E-06 1.6E-10 80.2 27.6 79 348-443 235-326 (355)
70 cd03822 GT1_ecORF704_like This 98.8 3E-05 6.6E-10 75.9 31.5 78 348-443 246-333 (366)
71 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 4.3E-07 9.3E-12 89.4 18.0 130 285-443 197-336 (363)
72 cd03796 GT1_PIG-A_like This fa 98.8 2.4E-05 5.1E-10 78.1 30.2 77 348-443 249-332 (398)
73 cd03807 GT1_WbnK_like This fam 98.7 2.9E-05 6.2E-10 75.7 29.9 76 349-443 251-331 (365)
74 TIGR03449 mycothiol_MshA UDP-N 98.7 7.3E-05 1.6E-09 74.8 32.4 79 348-443 282-367 (405)
75 cd03819 GT1_WavL_like This fam 98.7 2E-05 4.3E-10 77.1 27.6 138 286-443 184-329 (355)
76 cd04951 GT1_WbdM_like This fam 98.7 2.5E-05 5.3E-10 76.5 28.0 136 286-456 187-336 (360)
77 cd03811 GT1_WabH_like This fam 98.7 1.1E-05 2.5E-10 78.0 25.5 130 286-443 188-331 (353)
78 COG1519 KdtA 3-deoxy-D-manno-o 98.7 7.5E-05 1.6E-09 71.6 29.5 341 10-484 51-417 (419)
79 KOG3349 Predicted glycosyltran 98.7 1E-07 2.3E-12 76.5 8.1 114 288-413 5-129 (170)
80 cd05844 GT1_like_7 Glycosyltra 98.7 3.7E-05 8E-10 75.6 28.1 79 348-443 244-335 (367)
81 cd03802 GT1_AviGT4_like This f 98.6 2E-05 4.3E-10 76.4 24.0 128 288-443 172-307 (335)
82 cd04955 GT1_like_6 This family 98.6 9.8E-05 2.1E-09 72.4 28.3 155 290-481 196-361 (363)
83 TIGR02472 sucr_P_syn_N sucrose 98.6 7.1E-05 1.5E-09 75.6 27.7 108 348-478 316-434 (439)
84 TIGR03087 stp1 sugar transfera 98.5 2.1E-05 4.5E-10 78.5 22.8 109 348-481 279-393 (397)
85 cd03812 GT1_CapH_like This fam 98.5 6.6E-05 1.4E-09 73.5 25.6 87 348-455 248-339 (358)
86 TIGR02149 glgA_Coryne glycogen 98.5 0.00021 4.5E-09 71.0 29.3 131 288-443 202-351 (388)
87 PF02350 Epimerase_2: UDP-N-ac 98.5 1.3E-06 2.9E-11 84.5 12.4 131 284-443 178-317 (346)
88 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00057 1.2E-08 74.0 32.7 157 274-455 468-645 (1050)
89 TIGR03088 stp2 sugar transfera 98.5 0.00011 2.3E-09 72.7 25.3 110 349-481 255-369 (374)
90 PF02684 LpxB: Lipid-A-disacch 98.5 7.8E-05 1.7E-09 72.2 23.1 194 242-473 151-366 (373)
91 PLN02275 transferase, transfer 98.4 0.00058 1.3E-08 67.4 28.8 75 349-442 286-371 (371)
92 TIGR03568 NeuC_NnaA UDP-N-acet 98.4 4.2E-05 9.2E-10 74.9 20.5 131 286-443 201-338 (365)
93 PRK15179 Vi polysaccharide bio 98.3 0.0013 2.7E-08 69.4 30.7 96 348-458 573-674 (694)
94 PRK01021 lpxB lipid-A-disaccha 98.3 0.0009 2E-08 68.1 28.3 198 230-461 371-589 (608)
95 cd03809 GT1_mtfB_like This fam 98.3 0.00022 4.8E-09 69.7 24.0 90 348-459 252-348 (365)
96 PRK15427 colanic acid biosynth 98.3 0.00068 1.5E-08 67.7 26.7 114 348-483 278-404 (406)
97 cd03804 GT1_wbaZ_like This fam 98.3 8.5E-05 1.8E-09 72.7 19.7 125 289-443 197-325 (351)
98 cd03792 GT1_Trehalose_phosphor 98.2 0.0015 3.2E-08 64.6 27.2 111 348-483 251-370 (372)
99 TIGR02470 sucr_synth sucrose s 98.2 0.0065 1.4E-07 64.4 32.8 78 348-442 618-707 (784)
100 COG0381 WecB UDP-N-acetylgluco 98.2 0.00017 3.7E-09 68.6 17.8 144 286-461 204-355 (383)
101 PLN02949 transferase, transfer 98.2 0.0037 7.9E-08 63.3 28.8 81 348-443 334-421 (463)
102 PRK00654 glgA glycogen synthas 98.2 0.0024 5.2E-08 65.1 27.8 130 286-443 281-427 (466)
103 PLN02846 digalactosyldiacylgly 98.2 0.00043 9.4E-09 69.2 21.6 71 353-443 288-362 (462)
104 cd03791 GT1_Glycogen_synthase_ 98.1 0.0019 4.2E-08 66.1 25.6 132 287-443 296-441 (476)
105 PLN00142 sucrose synthase 98.0 0.0036 7.9E-08 66.4 26.0 53 375-442 677-730 (815)
106 COG5017 Uncharacterized conser 98.0 4.9E-05 1.1E-09 60.2 9.0 108 289-417 2-122 (161)
107 PF13844 Glyco_transf_41: Glyc 98.0 0.00021 4.6E-09 70.7 15.6 173 285-483 283-461 (468)
108 PLN02316 synthase/transferase 97.9 0.039 8.4E-07 60.4 32.1 118 349-484 900-1033(1036)
109 COG0763 LpxB Lipid A disacchar 97.9 0.0093 2E-07 56.9 23.2 210 230-482 146-379 (381)
110 cd03806 GT1_ALG11_like This fa 97.8 0.005 1.1E-07 61.8 22.2 78 348-443 304-391 (419)
111 PF00534 Glycos_transf_1: Glyc 97.6 0.00087 1.9E-08 58.1 12.0 89 348-456 72-167 (172)
112 cd04950 GT1_like_1 Glycosyltra 97.6 0.082 1.8E-06 52.2 30.9 77 348-443 253-339 (373)
113 cd04946 GT1_AmsK_like This fam 97.5 0.003 6.6E-08 63.1 15.5 162 286-479 229-406 (407)
114 cd04949 GT1_gtfA_like This fam 97.4 0.0091 2E-07 58.8 17.4 82 348-443 260-344 (372)
115 cd03813 GT1_like_3 This family 97.3 0.075 1.6E-06 54.3 22.6 87 348-454 353-449 (475)
116 TIGR02193 heptsyl_trn_I lipopo 97.3 0.0074 1.6E-07 58.2 14.3 136 285-442 178-319 (319)
117 PRK15484 lipopolysaccharide 1, 97.3 0.016 3.5E-07 57.4 16.9 113 348-483 256-376 (380)
118 PRK10125 putative glycosyl tra 97.2 0.29 6.2E-06 48.9 26.4 115 288-438 242-365 (405)
119 PF06722 DUF1205: Protein of u 97.2 0.00048 1E-08 52.8 4.2 56 272-327 26-86 (97)
120 cd01635 Glycosyltransferase_GT 97.1 0.1 2.2E-06 46.8 19.1 50 348-399 160-217 (229)
121 TIGR02918 accessory Sec system 97.0 0.49 1.1E-05 48.5 25.5 104 348-460 375-483 (500)
122 PRK09814 beta-1,6-galactofuran 97.0 0.005 1.1E-07 59.7 10.4 112 348-481 206-332 (333)
123 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0029 6.2E-08 52.3 7.0 79 348-443 52-134 (135)
124 PF13477 Glyco_trans_4_2: Glyc 96.9 0.0086 1.9E-07 49.7 9.5 102 9-147 1-106 (139)
125 PRK10422 lipopolysaccharide co 96.9 0.3 6.6E-06 47.7 21.6 108 6-146 4-114 (352)
126 COG1817 Uncharacterized protei 96.9 0.23 5E-06 46.0 18.7 107 15-149 7-113 (346)
127 COG3914 Spy Predicted O-linked 96.6 0.022 4.9E-07 56.8 11.1 109 284-400 427-542 (620)
128 TIGR02201 heptsyl_trn_III lipo 96.5 0.39 8.4E-06 46.8 19.4 106 9-146 1-109 (344)
129 PF13579 Glyco_trans_4_4: Glyc 96.4 0.0066 1.4E-07 51.3 5.8 94 23-147 6-103 (160)
130 PLN02501 digalactosyldiacylgly 96.3 1.8 3.9E-05 45.5 27.7 74 350-443 602-680 (794)
131 PRK15490 Vi polysaccharide bio 96.0 0.34 7.5E-06 49.5 16.1 114 348-484 454-575 (578)
132 cd03789 GT1_LPS_heptosyltransf 95.9 0.89 1.9E-05 42.7 18.1 45 9-53 1-47 (279)
133 TIGR02095 glgA glycogen/starch 95.9 0.14 3.1E-06 52.3 13.5 162 287-482 291-470 (473)
134 PRK10916 ADP-heptose:LPS hepto 95.9 1.2 2.6E-05 43.4 19.4 104 8-145 1-106 (348)
135 PRK10017 colanic acid biosynth 95.8 0.26 5.7E-06 49.2 14.5 181 276-483 224-423 (426)
136 KOG4626 O-linked N-acetylgluco 95.5 0.16 3.4E-06 51.3 11.0 125 285-417 757-888 (966)
137 TIGR02195 heptsyl_trn_II lipop 95.4 1.6 3.4E-05 42.3 17.9 101 9-144 1-104 (334)
138 PF12000 Glyco_trans_4_3: Gkyc 95.2 0.24 5.2E-06 42.4 10.2 43 106-148 52-96 (171)
139 COG0859 RfaF ADP-heptose:LPS h 95.2 2.2 4.9E-05 41.3 18.1 106 7-146 1-108 (334)
140 PRK14098 glycogen synthase; Pr 95.1 0.47 1E-05 48.6 13.8 83 348-443 361-450 (489)
141 PHA01633 putative glycosyl tra 94.8 0.53 1.2E-05 45.3 12.5 101 348-461 200-324 (335)
142 PF01975 SurE: Survival protei 94.8 0.26 5.7E-06 43.4 9.5 120 8-149 1-134 (196)
143 PF13524 Glyco_trans_1_2: Glyc 93.8 0.6 1.3E-05 35.3 8.6 84 374-480 9-92 (92)
144 PHA01630 putative group 1 glyc 93.2 1.4 3E-05 42.6 12.1 112 356-483 197-329 (331)
145 PF13439 Glyco_transf_4: Glyco 93.1 0.55 1.2E-05 40.1 8.4 30 17-46 11-40 (177)
146 PLN02939 transferase, transfer 92.2 3.2 6.9E-05 45.4 13.8 84 348-443 836-930 (977)
147 PF08660 Alg14: Oligosaccharid 91.5 3.3 7.1E-05 35.6 10.9 115 13-148 3-129 (170)
148 PF07429 Glyco_transf_56: 4-al 90.1 4.1 9E-05 38.8 10.9 140 286-443 183-332 (360)
149 COG0496 SurE Predicted acid ph 89.4 5.2 0.00011 36.5 10.7 113 8-149 1-126 (252)
150 PRK13932 stationary phase surv 88.5 14 0.00029 34.1 12.9 116 5-148 3-133 (257)
151 COG1618 Predicted nucleotide k 88.4 2.6 5.5E-05 35.5 7.3 42 5-46 3-44 (179)
152 PRK13933 stationary phase surv 88.2 8.7 0.00019 35.3 11.4 41 8-50 1-41 (253)
153 TIGR02095 glgA glycogen/starch 88.1 6 0.00013 40.4 11.7 38 8-45 1-44 (473)
154 COG1703 ArgK Putative periplas 87.7 2.3 4.9E-05 39.7 7.2 121 6-146 50-172 (323)
155 PF02951 GSH-S_N: Prokaryotic 87.5 0.63 1.4E-05 37.2 3.2 40 8-47 1-43 (119)
156 PRK02797 4-alpha-L-fucosyltran 86.8 15 0.00033 34.6 12.2 135 288-443 146-293 (322)
157 TIGR00715 precor6x_red precorr 86.0 7.3 0.00016 36.0 9.8 37 110-146 56-98 (256)
158 PRK02261 methylaspartate mutas 85.8 1.5 3.4E-05 36.1 4.8 45 5-49 1-45 (137)
159 PRK14099 glycogen synthase; Pr 84.9 14 0.00031 37.8 12.4 41 5-45 1-47 (485)
160 COG0438 RfaG Glycosyltransfera 84.6 30 0.00065 32.5 14.2 79 348-443 256-341 (381)
161 TIGR02919 accessory Sec system 84.6 24 0.00052 35.5 13.5 133 285-456 282-421 (438)
162 PRK00346 surE 5'(3')-nucleotid 84.4 18 0.00039 33.2 11.4 43 8-52 1-43 (250)
163 COG4370 Uncharacterized protei 84.2 4.8 0.0001 37.4 7.4 90 353-458 299-390 (412)
164 PRK05647 purN phosphoribosylgl 83.0 13 0.00028 33.0 9.7 35 7-44 1-37 (200)
165 PF00731 AIRC: AIR carboxylase 82.7 21 0.00046 29.8 10.2 139 288-463 2-148 (150)
166 PRK13934 stationary phase surv 82.5 25 0.00055 32.5 11.6 42 8-51 1-42 (266)
167 PRK05973 replicative DNA helic 81.6 5.1 0.00011 36.5 6.7 47 7-53 64-110 (237)
168 PF00551 Formyl_trans_N: Formy 81.5 16 0.00034 31.8 9.6 106 8-149 1-110 (181)
169 PRK13935 stationary phase surv 81.2 17 0.00036 33.5 9.9 43 8-52 1-43 (253)
170 PF02374 ArsA_ATPase: Anion-tr 80.1 11 0.00023 36.0 8.7 42 8-49 1-43 (305)
171 PRK10964 ADP-heptose:LPS hepto 79.6 7 0.00015 37.6 7.5 44 8-51 1-46 (322)
172 PF02441 Flavoprotein: Flavopr 78.8 1.5 3.2E-05 35.8 2.1 45 8-53 1-45 (129)
173 PF06925 MGDG_synth: Monogalac 78.8 6 0.00013 33.9 6.1 42 107-148 77-124 (169)
174 TIGR00087 surE 5'/3'-nucleotid 78.7 43 0.00094 30.7 11.8 43 8-52 1-43 (244)
175 PRK06849 hypothetical protein; 78.7 13 0.00029 36.8 9.3 37 5-45 2-38 (389)
176 KOG3062 RNA polymerase II elon 78.6 18 0.00039 32.4 8.7 37 7-43 1-38 (281)
177 TIGR02400 trehalose_OtsA alpha 78.3 9 0.00019 38.9 8.0 104 354-483 341-455 (456)
178 cd08783 Death_MALT1 Death doma 77.8 13 0.00028 28.0 6.5 67 397-487 20-86 (97)
179 cd03788 GT1_TPS Trehalose-6-Ph 77.6 9.8 0.00021 38.7 8.2 105 353-482 345-459 (460)
180 KOG2941 Beta-1,4-mannosyltrans 77.2 62 0.0014 31.1 12.3 62 5-72 10-71 (444)
181 PF04413 Glycos_transf_N: 3-De 76.9 5.6 0.00012 34.8 5.4 100 9-148 22-126 (186)
182 cd02067 B12-binding B12 bindin 76.2 4.2 9E-05 32.5 4.1 36 9-44 1-36 (119)
183 PRK08305 spoVFB dipicolinate s 75.0 4 8.7E-05 35.8 3.9 43 5-47 3-45 (196)
184 COG2874 FlaH Predicted ATPases 74.9 5.9 0.00013 35.1 4.8 33 15-47 36-68 (235)
185 PRK08057 cobalt-precorrin-6x r 74.5 26 0.00056 32.2 9.2 92 7-147 2-99 (248)
186 PF02310 B12-binding: B12 bind 74.4 6.4 0.00014 31.4 4.8 37 8-44 1-37 (121)
187 COG0541 Ffh Signal recognition 74.4 45 0.00097 33.1 11.0 51 6-56 99-149 (451)
188 PRK13789 phosphoribosylamine-- 74.3 6.9 0.00015 39.3 5.9 34 6-44 3-36 (426)
189 PF06258 Mito_fiss_Elm1: Mitoc 74.2 84 0.0018 30.1 18.0 39 358-397 221-259 (311)
190 PF04127 DFP: DNA / pantothena 74.0 1.5 3.3E-05 38.2 1.1 38 7-44 3-52 (185)
191 TIGR03878 thermo_KaiC_2 KaiC d 73.9 43 0.00092 31.0 10.7 39 8-46 37-75 (259)
192 PRK13931 stationary phase surv 73.1 43 0.00092 31.0 10.2 113 8-148 1-129 (261)
193 PRK06067 flagellar accessory p 73.0 5.8 0.00013 36.1 4.7 40 9-48 27-66 (234)
194 PF12146 Hydrolase_4: Putative 72.6 6.5 0.00014 28.8 4.0 37 7-43 15-51 (79)
195 cd00984 DnaB_C DnaB helicase C 72.5 20 0.00044 32.6 8.3 43 10-52 16-59 (242)
196 COG0003 ArsA Predicted ATPase 72.1 59 0.0013 31.2 11.3 43 7-49 1-44 (322)
197 PF01012 ETF: Electron transfe 71.8 21 0.00046 30.3 7.7 112 10-148 2-122 (164)
198 PF05159 Capsule_synth: Capsul 71.3 18 0.0004 33.6 7.8 42 351-395 185-226 (269)
199 cd01965 Nitrogenase_MoFe_beta_ 71.0 38 0.00083 34.1 10.4 35 110-147 362-396 (428)
200 PRK14099 glycogen synthase; Pr 70.7 6.6 0.00014 40.3 4.9 81 349-441 350-441 (485)
201 cd01124 KaiC KaiC is a circadi 70.3 9.5 0.00021 33.1 5.3 42 10-51 2-43 (187)
202 PF01075 Glyco_transf_9: Glyco 70.2 8.4 0.00018 35.2 5.2 99 285-393 104-208 (247)
203 cd01424 MGS_CPS_II Methylglyox 69.7 24 0.00053 27.6 7.0 83 20-145 11-100 (110)
204 COG2910 Putative NADH-flavin r 68.8 5.7 0.00012 34.2 3.2 34 8-45 1-34 (211)
205 cd01974 Nitrogenase_MoFe_beta 68.6 44 0.00095 33.7 10.3 35 110-147 368-402 (435)
206 PRK06321 replicative DNA helic 68.0 43 0.00093 34.1 10.0 41 10-50 229-270 (472)
207 cd07039 TPP_PYR_POX Pyrimidine 67.9 66 0.0014 27.3 9.8 78 305-394 4-96 (164)
208 PRK06732 phosphopantothenate-- 67.9 5.8 0.00013 36.0 3.5 37 8-44 1-49 (229)
209 cd00550 ArsA_ATPase Oxyanion-t 67.0 38 0.00083 31.3 8.8 43 10-53 2-45 (254)
210 PRK06988 putative formyltransf 66.9 30 0.00065 33.1 8.2 33 7-44 2-34 (312)
211 TIGR02655 circ_KaiC circadian 66.7 14 0.0003 37.9 6.3 47 7-53 263-309 (484)
212 PRK07313 phosphopantothenoylcy 66.6 4.9 0.00011 35.0 2.6 45 7-52 1-45 (182)
213 PRK09620 hypothetical protein; 66.3 7.5 0.00016 35.3 3.8 39 6-44 2-52 (229)
214 PRK05595 replicative DNA helic 66.1 35 0.00076 34.5 9.0 41 10-50 204-245 (444)
215 cd07038 TPP_PYR_PDC_IPDC_like 65.8 37 0.0008 28.8 7.8 28 368-395 60-93 (162)
216 cd01423 MGS_CPS_I_III Methylgl 65.6 30 0.00065 27.4 6.8 93 12-144 4-105 (116)
217 PF03308 ArgK: ArgK protein; 65.3 13 0.00028 34.1 5.1 123 6-148 28-152 (266)
218 COG2185 Sbm Methylmalonyl-CoA 65.2 11 0.00023 31.2 4.1 41 5-45 10-50 (143)
219 PRK14098 glycogen synthase; Pr 64.1 10 0.00022 39.0 4.7 40 6-45 4-49 (489)
220 PRK12342 hypothetical protein; 64.1 14 0.0003 34.1 5.1 38 111-148 101-144 (254)
221 TIGR00639 PurN phosphoribosylg 63.9 1E+02 0.0022 27.0 10.6 39 110-148 70-109 (190)
222 TIGR02015 BchY chlorophyllide 63.7 44 0.00095 33.6 9.0 32 113-147 349-380 (422)
223 PRK02155 ppnK NAD(+)/NADH kina 63.5 36 0.00079 32.1 8.0 54 365-445 63-120 (291)
224 smart00851 MGS MGS-like domain 63.5 34 0.00073 25.6 6.4 35 110-144 46-89 (90)
225 cd01121 Sms Sms (bacterial rad 63.5 35 0.00076 33.5 8.1 41 9-49 84-124 (372)
226 PF02571 CbiJ: Precorrin-6x re 63.2 29 0.00062 32.0 7.0 38 110-147 57-100 (249)
227 TIGR00460 fmt methionyl-tRNA f 63.1 35 0.00075 32.7 7.9 31 8-43 1-31 (313)
228 PRK08760 replicative DNA helic 62.7 30 0.00066 35.3 7.8 41 9-49 231-272 (476)
229 PF10093 DUF2331: Uncharacteri 62.7 91 0.002 30.5 10.5 153 295-481 188-374 (374)
230 PRK10867 signal recognition pa 62.2 66 0.0014 32.4 9.8 43 8-50 101-144 (433)
231 KOG0780 Signal recognition par 62.1 35 0.00076 33.3 7.4 59 9-68 103-161 (483)
232 PRK06029 3-octaprenyl-4-hydrox 61.6 6.7 0.00014 34.2 2.5 45 7-52 1-46 (185)
233 PRK09165 replicative DNA helic 60.9 48 0.001 34.1 8.9 43 9-51 219-276 (497)
234 COG1484 DnaC DNA replication p 60.4 8.1 0.00018 35.7 3.0 48 6-53 104-151 (254)
235 TIGR03600 phage_DnaB phage rep 60.2 77 0.0017 31.8 10.2 42 9-50 196-238 (421)
236 PRK04328 hypothetical protein; 60.0 1.4E+02 0.0031 27.4 11.6 44 7-50 23-66 (249)
237 TIGR00665 DnaB replicative DNA 59.3 68 0.0015 32.3 9.7 42 9-50 197-239 (434)
238 PHA02542 41 41 helicase; Provi 59.3 54 0.0012 33.4 8.8 42 9-50 192-233 (473)
239 cd07035 TPP_PYR_POX_like Pyrim 59.1 76 0.0016 26.4 8.6 28 368-395 60-93 (155)
240 PRK08506 replicative DNA helic 58.8 71 0.0015 32.6 9.7 43 8-50 193-235 (472)
241 PLN02470 acetolactate synthase 58.8 31 0.00068 36.3 7.4 92 292-394 2-109 (585)
242 cd03793 GT1_Glycogen_synthase_ 58.5 40 0.00087 35.0 7.7 78 359-443 468-551 (590)
243 COG0223 Fmt Methionyl-tRNA for 58.4 21 0.00046 33.8 5.3 33 7-44 1-33 (307)
244 TIGR02852 spore_dpaB dipicolin 58.3 11 0.00024 32.9 3.3 39 8-46 1-39 (187)
245 PF00448 SRP54: SRP54-type pro 58.2 66 0.0014 28.3 8.2 41 10-50 4-44 (196)
246 COG0801 FolK 7,8-dihydro-6-hyd 58.1 20 0.00044 30.3 4.6 34 288-321 3-37 (160)
247 COG2894 MinD Septum formation 57.6 18 0.0004 32.2 4.4 40 7-46 1-42 (272)
248 PRK13982 bifunctional SbtC-lik 57.5 12 0.00027 37.8 3.9 41 5-45 254-306 (475)
249 TIGR03713 acc_sec_asp1 accesso 57.4 31 0.00068 35.6 6.9 73 349-443 409-487 (519)
250 cd00561 CobA_CobO_BtuR ATP:cor 56.8 1.2E+02 0.0027 25.7 10.5 35 9-43 4-38 (159)
251 cd00532 MGS-like MGS-like doma 56.1 59 0.0013 25.5 6.9 85 20-146 10-105 (112)
252 PRK14501 putative bifunctional 55.9 32 0.0007 37.3 7.0 111 352-484 345-462 (726)
253 PRK05986 cob(I)alamin adenolsy 55.6 1.4E+02 0.0031 26.1 11.6 103 6-130 21-126 (191)
254 PLN03063 alpha,alpha-trehalose 55.6 41 0.00089 36.9 7.8 99 361-484 371-477 (797)
255 PF07355 GRDB: Glycine/sarcosi 55.5 25 0.00055 33.7 5.3 42 105-146 66-117 (349)
256 PRK05636 replicative DNA helic 55.4 44 0.00096 34.4 7.5 41 9-49 267-308 (505)
257 PRK10964 ADP-heptose:LPS hepto 55.4 23 0.00051 33.9 5.4 131 287-443 179-321 (322)
258 COG0052 RpsB Ribosomal protein 55.2 1.5E+02 0.0033 27.0 9.8 30 119-148 156-187 (252)
259 PRK07773 replicative DNA helic 54.9 88 0.0019 34.9 10.3 42 9-50 219-261 (886)
260 PRK03359 putative electron tra 54.3 25 0.00053 32.5 5.0 39 110-148 103-147 (256)
261 TIGR03880 KaiC_arch_3 KaiC dom 54.3 40 0.00087 30.3 6.5 46 8-53 17-62 (224)
262 PRK05920 aromatic acid decarbo 54.0 11 0.00023 33.5 2.5 44 7-51 3-46 (204)
263 PF05728 UPF0227: Uncharacteri 53.8 25 0.00055 30.7 4.8 41 109-149 47-90 (187)
264 PRK11889 flhF flagellar biosyn 53.7 92 0.002 31.0 8.9 41 7-47 241-281 (436)
265 PRK14478 nitrogenase molybdenu 53.2 1E+02 0.0023 31.4 9.8 34 110-146 384-417 (475)
266 COG2861 Uncharacterized protei 53.2 1.4E+02 0.003 27.1 9.2 36 111-146 140-179 (250)
267 cd02070 corrinoid_protein_B12- 52.9 26 0.00055 31.1 4.8 39 6-44 81-119 (201)
268 PRK11823 DNA repair protein Ra 52.6 59 0.0013 32.9 7.9 43 8-50 81-123 (446)
269 PRK05748 replicative DNA helic 52.5 97 0.0021 31.4 9.5 43 8-50 204-247 (448)
270 COG3195 Uncharacterized protei 52.5 1E+02 0.0022 26.1 7.6 76 378-462 88-164 (176)
271 PRK07206 hypothetical protein; 52.3 51 0.0011 32.9 7.5 32 8-44 3-34 (416)
272 COG1066 Sms Predicted ATP-depe 51.9 35 0.00077 33.6 5.7 43 7-50 93-135 (456)
273 cd01968 Nitrogenase_NifE_I Nit 51.4 1.4E+02 0.0031 29.7 10.4 34 110-146 347-380 (410)
274 TIGR00416 sms DNA repair prote 50.6 29 0.00062 35.2 5.3 41 8-48 95-135 (454)
275 COG0041 PurE Phosphoribosylcar 50.5 1.5E+02 0.0033 24.8 12.5 139 288-466 4-153 (162)
276 PF01210 NAD_Gly3P_dh_N: NAD-d 50.1 10 0.00022 32.1 1.7 32 9-45 1-32 (157)
277 PF02585 PIG-L: GlcNAc-PI de-N 50.0 89 0.0019 25.0 7.3 21 107-127 88-108 (128)
278 cd02071 MM_CoA_mut_B12_BD meth 49.4 30 0.00064 27.8 4.3 37 9-45 1-37 (122)
279 PLN02948 phosphoribosylaminoim 49.1 3.3E+02 0.0071 28.7 12.9 145 285-467 409-562 (577)
280 COG4088 Predicted nucleotide k 49.0 23 0.0005 31.4 3.6 37 8-44 2-38 (261)
281 cd01840 SGNH_hydrolase_yrhL_li 48.9 61 0.0013 26.9 6.3 39 285-324 50-88 (150)
282 cd07037 TPP_PYR_MenD Pyrimidin 48.4 70 0.0015 27.2 6.6 27 368-394 61-93 (162)
283 PF08433 KTI12: Chromatin asso 47.5 2.4E+02 0.0052 26.3 11.1 102 7-151 1-108 (270)
284 TIGR00959 ffh signal recogniti 46.9 1.5E+02 0.0033 29.7 9.6 42 9-50 101-143 (428)
285 PRK09739 hypothetical protein; 46.7 46 0.001 29.3 5.5 38 5-42 1-41 (199)
286 COG1663 LpxK Tetraacyldisaccha 46.6 89 0.0019 30.0 7.4 33 13-45 55-87 (336)
287 PRK01231 ppnK inorganic polyph 46.4 97 0.0021 29.4 7.8 54 365-445 62-119 (295)
288 PRK11199 tyrA bifunctional cho 46.0 1.7E+02 0.0037 28.8 9.8 35 6-45 97-132 (374)
289 TIGR02370 pyl_corrinoid methyl 46.0 38 0.00082 29.9 4.7 45 6-50 83-127 (197)
290 TIGR01918 various_sel_PB selen 45.7 42 0.00091 33.1 5.2 43 105-147 62-114 (431)
291 TIGR01917 gly_red_sel_B glycin 45.6 42 0.0009 33.2 5.2 43 105-147 62-114 (431)
292 PRK11519 tyrosine kinase; Prov 45.5 79 0.0017 34.3 8.0 45 6-50 524-570 (719)
293 PLN02939 transferase, transfer 45.1 34 0.00075 37.8 5.0 42 5-46 479-526 (977)
294 COG2109 BtuR ATP:corrinoid ade 45.1 2.1E+02 0.0046 25.0 10.1 102 10-130 31-133 (198)
295 KOG0853 Glycosyltransferase [C 44.9 18 0.00039 36.6 2.8 65 379-459 381-445 (495)
296 PF09314 DUF1972: Domain of un 44.5 42 0.0009 29.3 4.6 57 7-70 1-62 (185)
297 TIGR00682 lpxK tetraacyldisacc 44.5 20 0.00043 34.2 2.9 33 14-46 37-69 (311)
298 cd01976 Nitrogenase_MoFe_alpha 44.2 29 0.00064 34.8 4.2 36 109-147 359-394 (421)
299 CHL00076 chlB photochlorophyll 43.8 35 0.00076 35.2 4.7 36 109-147 364-399 (513)
300 TIGR00421 ubiX_pad polyprenyl 43.7 16 0.00035 31.7 2.0 42 9-51 1-42 (181)
301 PRK13011 formyltetrahydrofolat 42.9 1.5E+02 0.0033 27.9 8.5 108 5-149 87-196 (286)
302 PRK13768 GTPase; Provisional 42.6 88 0.0019 28.8 6.8 37 9-45 4-40 (253)
303 PRK00039 ruvC Holliday junctio 42.5 71 0.0015 27.2 5.7 44 106-149 48-106 (164)
304 TIGR02113 coaC_strep phosphopa 42.5 18 0.0004 31.2 2.2 42 9-51 2-43 (177)
305 TIGR03877 thermo_KaiC_1 KaiC d 42.4 2.5E+02 0.0055 25.4 9.8 45 6-50 20-64 (237)
306 PRK00005 fmt methionyl-tRNA fo 42.4 1.9E+02 0.0041 27.6 9.3 31 8-43 1-31 (309)
307 PRK00784 cobyric acid synthase 42.3 2.8E+02 0.0061 28.5 11.1 35 9-43 4-39 (488)
308 COG2120 Uncharacterized protei 42.3 42 0.00091 30.6 4.6 40 4-43 7-46 (237)
309 PRK04940 hypothetical protein; 42.3 61 0.0013 28.1 5.2 31 119-149 60-91 (180)
310 TIGR00347 bioD dethiobiotin sy 42.2 1E+02 0.0022 26.0 6.8 28 14-41 5-32 (166)
311 TIGR01286 nifK nitrogenase mol 42.1 38 0.00083 34.9 4.7 34 111-147 429-462 (515)
312 cd03466 Nitrogenase_NifN_2 Nit 42.1 42 0.0009 33.8 4.9 36 109-147 362-397 (429)
313 PF04464 Glyphos_transf: CDP-G 42.1 44 0.00094 32.7 5.1 115 348-479 251-367 (369)
314 TIGR02700 flavo_MJ0208 archaeo 42.0 28 0.00062 31.7 3.4 44 10-53 2-47 (234)
315 cd02032 Bchl_like This family 42.0 41 0.00088 31.2 4.6 37 8-44 1-37 (267)
316 CHL00072 chlL photochlorophyll 42.0 44 0.00096 31.6 4.8 39 8-46 1-39 (290)
317 TIGR01285 nifN nitrogenase mol 41.7 44 0.00095 33.7 5.0 36 109-147 363-398 (432)
318 cd01122 GP4d_helicase GP4d_hel 41.3 12 0.00025 34.9 0.8 43 8-50 31-74 (271)
319 TIGR00708 cobA cob(I)alamin ad 41.3 2.3E+02 0.005 24.4 10.9 35 8-42 6-40 (173)
320 PRK07004 replicative DNA helic 41.2 1.8E+02 0.004 29.5 9.4 42 9-50 215-257 (460)
321 PRK06249 2-dehydropantoate 2-r 41.1 33 0.0007 32.8 3.9 36 5-45 3-38 (313)
322 PRK02910 light-independent pro 41.1 42 0.0009 34.8 4.9 35 110-147 353-387 (519)
323 KOG2825 Putative arsenite-tran 41.1 1E+02 0.0022 28.3 6.5 49 5-53 16-65 (323)
324 PRK12724 flagellar biosynthesi 40.8 2E+02 0.0042 28.9 9.1 41 9-49 225-266 (432)
325 cd01981 Pchlide_reductase_B Pc 40.7 43 0.00093 33.7 4.8 37 109-148 360-396 (430)
326 COG0467 RAD55 RecA-superfamily 40.7 48 0.001 30.6 4.8 47 7-53 23-69 (260)
327 TIGR01278 DPOR_BchB light-inde 40.7 42 0.00091 34.7 4.8 36 110-148 355-390 (511)
328 TIGR01380 glut_syn glutathione 40.6 42 0.00092 32.1 4.5 40 8-47 1-43 (312)
329 PF08323 Glyco_transf_5: Starc 40.3 24 0.00053 32.3 2.8 24 22-45 20-43 (245)
330 PRK06395 phosphoribosylamine-- 40.2 1.2E+02 0.0026 30.6 7.8 32 7-43 2-33 (435)
331 COG1748 LYS9 Saccharopine dehy 40.2 2.1E+02 0.0045 28.3 9.1 33 7-44 1-34 (389)
332 PRK04148 hypothetical protein; 40.1 68 0.0015 26.3 4.9 33 6-44 16-48 (134)
333 PRK06027 purU formyltetrahydro 40.1 1.8E+02 0.0038 27.5 8.5 109 1-149 83-196 (286)
334 PRK05784 phosphoribosylamine-- 39.7 80 0.0017 32.4 6.5 31 8-43 1-33 (486)
335 PRK08322 acetolactate synthase 39.4 1.1E+02 0.0023 32.0 7.7 28 367-394 63-96 (547)
336 PRK09302 circadian clock prote 39.4 47 0.001 34.3 4.9 45 7-51 273-317 (509)
337 TIGR01007 eps_fam capsular exo 39.2 56 0.0012 28.8 4.9 39 8-46 17-57 (204)
338 PF06180 CbiK: Cobalt chelatas 39.2 47 0.001 30.8 4.4 39 287-325 2-43 (262)
339 cd01715 ETF_alpha The electron 39.0 70 0.0015 27.3 5.2 41 108-148 72-115 (168)
340 PF03446 NAD_binding_2: NAD bi 38.8 28 0.00061 29.5 2.7 31 7-42 1-31 (163)
341 cd02034 CooC The accessory pro 38.8 75 0.0016 25.2 5.0 37 9-45 1-37 (116)
342 COG2085 Predicted dinucleotide 38.6 47 0.001 29.5 4.1 35 7-46 1-35 (211)
343 PRK08125 bifunctional UDP-gluc 38.5 2.3E+02 0.0049 30.5 10.1 39 111-149 67-106 (660)
344 cd02069 methionine_synthase_B1 38.5 56 0.0012 29.3 4.6 41 6-46 87-127 (213)
345 PRK05579 bifunctional phosphop 38.4 33 0.00072 34.1 3.5 47 5-52 4-50 (399)
346 TIGR01281 DPOR_bchL light-inde 38.2 51 0.0011 30.6 4.6 35 8-42 1-35 (268)
347 PF02826 2-Hacid_dh_C: D-isome 38.1 91 0.002 26.9 5.9 105 285-440 36-143 (178)
348 PRK03767 NAD(P)H:quinone oxido 37.9 56 0.0012 28.8 4.6 38 7-44 1-40 (200)
349 PRK05380 pyrG CTP synthetase; 37.9 4.3E+02 0.0093 27.4 11.2 43 7-49 1-46 (533)
350 PRK12475 thiamine/molybdopteri 37.8 1.2E+02 0.0026 29.4 7.1 35 5-44 22-57 (338)
351 TIGR00725 conserved hypothetic 37.5 1.1E+02 0.0024 25.9 6.1 97 274-394 21-122 (159)
352 PRK06276 acetolactate synthase 37.3 1.2E+02 0.0027 31.9 7.8 27 368-394 64-96 (586)
353 TIGR00173 menD 2-succinyl-5-en 37.3 1.9E+02 0.0041 29.1 8.9 27 368-394 64-96 (432)
354 cd01980 Chlide_reductase_Y Chl 37.3 55 0.0012 32.8 4.9 32 113-147 344-375 (416)
355 PRK03372 ppnK inorganic polyph 37.0 47 0.001 31.6 4.1 55 364-445 71-129 (306)
356 PF02702 KdpD: Osmosensitive K 36.9 63 0.0014 28.5 4.5 40 7-46 5-44 (211)
357 PLN02929 NADH kinase 36.7 35 0.00076 32.3 3.2 66 365-445 64-138 (301)
358 cd01141 TroA_d Periplasmic bin 36.5 61 0.0013 28.0 4.6 35 113-147 63-99 (186)
359 COG2086 FixA Electron transfer 36.5 71 0.0015 29.5 5.1 41 108-148 100-146 (260)
360 PRK14092 2-amino-4-hydroxy-6-h 36.4 80 0.0017 26.9 5.0 31 285-315 6-36 (163)
361 PF05225 HTH_psq: helix-turn-h 36.3 56 0.0012 20.9 3.2 27 430-458 1-27 (45)
362 TIGR02114 coaB_strep phosphopa 36.2 33 0.00072 31.0 2.9 20 24-43 28-47 (227)
363 PRK13234 nifH nitrogenase redu 36.2 69 0.0015 30.3 5.2 39 6-44 3-41 (295)
364 COG3660 Predicted nucleoside-d 36.2 3.6E+02 0.0078 25.1 18.6 38 355-393 234-271 (329)
365 KOG3339 Predicted glycosyltran 36.1 1.6E+02 0.0035 25.6 6.6 24 11-34 41-64 (211)
366 PF06564 YhjQ: YhjQ protein; 36.0 68 0.0015 29.3 4.8 38 7-44 1-39 (243)
367 PRK09219 xanthine phosphoribos 35.7 96 0.0021 27.2 5.6 40 108-147 39-80 (189)
368 PRK00994 F420-dependent methyl 35.6 82 0.0018 28.4 5.0 41 110-150 51-97 (277)
369 TIGR02699 archaeo_AfpA archaeo 35.4 34 0.00073 29.5 2.6 41 10-51 2-44 (174)
370 TIGR00750 lao LAO/AO transport 35.3 2.1E+02 0.0046 27.1 8.4 42 6-47 33-74 (300)
371 PF04244 DPRP: Deoxyribodipyri 35.1 37 0.00079 30.7 2.9 25 20-44 47-71 (224)
372 COG0503 Apt Adenine/guanine ph 35.1 1E+02 0.0022 26.7 5.7 37 110-146 44-82 (179)
373 PRK06456 acetolactate synthase 34.9 1.7E+02 0.0036 30.8 8.3 27 368-394 69-101 (572)
374 TIGR01501 MthylAspMutase methy 34.8 72 0.0016 26.2 4.3 39 8-46 2-40 (134)
375 cd07025 Peptidase_S66 LD-Carbo 34.7 65 0.0014 30.3 4.7 73 299-395 46-120 (282)
376 PF02776 TPP_enzyme_N: Thiamin 34.5 1E+02 0.0022 26.3 5.6 81 305-396 5-99 (172)
377 PRK06718 precorrin-2 dehydroge 34.5 3.3E+02 0.0071 24.1 10.5 146 285-463 10-164 (202)
378 PRK12921 2-dehydropantoate 2-r 34.4 41 0.00089 31.9 3.4 31 8-43 1-31 (305)
379 COG1759 5-formaminoimidazole-4 34.3 1.2E+02 0.0026 28.8 6.1 129 274-437 5-152 (361)
380 TIGR00110 ilvD dihydroxy-acid 34.2 4.4E+02 0.0094 27.4 10.5 45 107-151 77-125 (535)
381 TIGR00521 coaBC_dfp phosphopan 34.1 33 0.00071 34.0 2.7 46 6-52 2-47 (390)
382 PF07015 VirC1: VirC1 protein; 34.1 89 0.0019 28.3 5.1 41 10-50 4-45 (231)
383 cd02040 NifH NifH gene encodes 34.0 67 0.0014 29.7 4.7 38 8-45 2-39 (270)
384 PRK13604 luxD acyl transferase 34.0 80 0.0017 30.1 5.1 37 6-42 35-71 (307)
385 COG2159 Predicted metal-depend 33.4 3.5E+02 0.0076 25.6 9.4 94 273-383 115-210 (293)
386 COG0143 MetG Methionyl-tRNA sy 33.3 69 0.0015 33.3 4.9 41 7-47 4-54 (558)
387 PRK09435 membrane ATPase/prote 33.1 1.8E+02 0.0039 28.1 7.4 43 6-48 55-97 (332)
388 PRK14619 NAD(P)H-dependent gly 33.1 85 0.0018 29.9 5.3 35 6-45 3-37 (308)
389 COG0287 TyrA Prephenate dehydr 33.0 3.9E+02 0.0084 25.1 9.5 43 6-53 2-44 (279)
390 PF13167 GTP-bdg_N: GTP-bindin 33.0 98 0.0021 23.6 4.5 36 109-144 47-84 (95)
391 PRK11064 wecC UDP-N-acetyl-D-m 32.8 57 0.0012 32.7 4.2 33 6-43 2-34 (415)
392 PRK06522 2-dehydropantoate 2-r 32.7 45 0.00097 31.5 3.3 31 8-43 1-31 (304)
393 PRK11269 glyoxylate carboligas 32.5 1.8E+02 0.0039 30.7 8.1 27 368-394 69-101 (591)
394 PRK08229 2-dehydropantoate 2-r 32.5 45 0.00098 32.2 3.4 33 7-44 2-34 (341)
395 PRK12448 dihydroxy-acid dehydr 32.4 4.6E+02 0.0099 27.7 10.4 46 107-152 99-148 (615)
396 PRK05632 phosphate acetyltrans 32.3 5.3E+02 0.012 27.9 11.6 35 9-43 4-39 (684)
397 PHA02754 hypothetical protein; 32.2 94 0.002 20.9 3.6 22 438-462 7-28 (67)
398 COG2099 CobK Precorrin-6x redu 32.1 2.5E+02 0.0055 25.8 7.6 38 109-146 56-99 (257)
399 COG3349 Uncharacterized conser 32.1 44 0.00095 33.9 3.2 34 8-46 1-34 (485)
400 PRK08155 acetolactate synthase 32.0 1.7E+02 0.0036 30.7 7.7 92 292-394 3-109 (564)
401 PRK02649 ppnK inorganic polyph 31.9 70 0.0015 30.5 4.4 54 365-445 68-125 (305)
402 cd01985 ETF The electron trans 31.9 88 0.0019 27.0 4.8 39 110-148 82-123 (181)
403 PRK13230 nitrogenase reductase 31.3 80 0.0017 29.5 4.8 37 7-43 1-37 (279)
404 TIGR00640 acid_CoA_mut_C methy 31.3 91 0.002 25.4 4.5 39 6-44 1-39 (132)
405 cd04299 GT1_Glycogen_Phosphory 31.3 5.9E+02 0.013 28.0 11.6 109 362-480 563-685 (778)
406 PRK06270 homoserine dehydrogen 31.0 4.2E+02 0.0091 25.7 9.8 59 358-417 80-150 (341)
407 TIGR00877 purD phosphoribosyla 31.0 1.8E+02 0.0039 29.1 7.5 33 8-45 1-33 (423)
408 PF12695 Abhydrolase_5: Alpha/ 30.9 1.1E+02 0.0024 24.5 5.1 35 10-44 1-35 (145)
409 PF13450 NAD_binding_8: NAD(P) 30.9 58 0.0013 22.9 2.9 20 25-44 9-28 (68)
410 cd02065 B12-binding_like B12 b 30.8 81 0.0018 24.9 4.2 37 10-46 2-38 (125)
411 PRK07710 acetolactate synthase 30.8 1.7E+02 0.0036 30.8 7.5 27 368-394 79-111 (571)
412 COG1698 Uncharacterized protei 30.7 1.6E+02 0.0035 22.0 5.0 53 429-484 10-66 (93)
413 PRK00885 phosphoribosylamine-- 30.3 1.1E+02 0.0024 30.6 5.9 29 8-41 1-30 (420)
414 COG2084 MmsB 3-hydroxyisobutyr 30.2 66 0.0014 30.3 3.8 32 8-44 1-32 (286)
415 cd01983 Fer4_NifH The Fer4_Nif 30.1 1.1E+02 0.0025 22.2 4.7 33 10-42 2-34 (99)
416 PRK08591 acetyl-CoA carboxylas 30.1 3.3E+02 0.0072 27.5 9.3 33 7-44 2-34 (451)
417 KOG1344 Predicted histone deac 30.0 1.8E+02 0.0038 26.2 6.1 44 107-150 236-301 (324)
418 COG3340 PepE Peptidase E [Amin 30.0 4.1E+02 0.0088 23.8 9.5 106 273-395 21-126 (224)
419 KOG1387 Glycosyltransferase [C 29.9 5.3E+02 0.011 25.1 21.7 290 103-463 135-445 (465)
420 PF06506 PrpR_N: Propionate ca 29.9 88 0.0019 26.9 4.4 72 360-441 27-121 (176)
421 PLN00016 RNA-binding protein; 29.8 65 0.0014 31.7 4.1 37 6-44 51-89 (378)
422 PF01695 IstB_IS21: IstB-like 29.8 1.1E+02 0.0023 26.5 4.9 41 6-46 46-86 (178)
423 TIGR00345 arsA arsenite-activa 29.8 2.3E+02 0.005 26.6 7.5 24 25-48 3-26 (284)
424 PRK06756 flavodoxin; Provision 29.8 96 0.0021 25.6 4.5 37 7-43 1-38 (148)
425 TIGR01862 N2-ase-Ialpha nitrog 29.5 63 0.0014 32.7 3.9 35 110-147 378-412 (443)
426 PRK14569 D-alanyl-alanine synt 29.4 1.1E+02 0.0024 29.0 5.3 38 6-43 2-43 (296)
427 cd01018 ZntC Metal binding pro 29.3 1.7E+02 0.0037 27.1 6.6 43 108-150 206-250 (266)
428 PRK05246 glutathione synthetas 29.2 83 0.0018 30.1 4.5 41 7-47 1-44 (316)
429 TIGR02329 propionate_PrpR prop 29.0 1.9E+02 0.0041 30.0 7.3 36 111-149 137-172 (526)
430 PRK02645 ppnK inorganic polyph 29.0 1.1E+02 0.0023 29.3 5.1 66 301-393 18-87 (305)
431 PRK01175 phosphoribosylformylg 29.0 4.7E+02 0.01 24.2 10.1 36 7-45 3-38 (261)
432 PRK06719 precorrin-2 dehydroge 28.8 68 0.0015 27.1 3.4 35 5-44 11-45 (157)
433 PRK01372 ddl D-alanine--D-alan 28.8 97 0.0021 29.3 5.0 38 7-44 4-45 (304)
434 PF01297 TroA: Periplasmic sol 28.8 1.9E+02 0.004 26.6 6.7 40 109-148 189-230 (256)
435 cd01425 RPS2 Ribosomal protein 28.7 4E+02 0.0087 23.3 8.7 32 118-149 126-159 (193)
436 TIGR00228 ruvC crossover junct 28.6 1.5E+02 0.0032 25.1 5.2 45 105-149 43-102 (156)
437 PLN02935 Bifunctional NADH kin 28.4 81 0.0017 32.2 4.3 54 365-445 262-319 (508)
438 cd01147 HemV-2 Metal binding p 28.4 97 0.0021 28.4 4.8 35 114-148 69-106 (262)
439 PRK11780 isoprenoid biosynthes 28.4 1.1E+02 0.0024 27.4 4.9 38 8-45 2-43 (217)
440 PRK08533 flagellar accessory p 28.1 1.5E+02 0.0033 26.8 5.8 43 7-49 24-66 (230)
441 TIGR01744 XPRTase xanthine pho 28.0 1.5E+02 0.0033 26.0 5.5 40 108-147 39-80 (191)
442 cd01017 AdcA Metal binding pro 28.0 3.3E+02 0.0071 25.5 8.3 41 108-148 209-251 (282)
443 TIGR01284 alt_nitrog_alph nitr 27.8 62 0.0013 32.9 3.5 35 110-147 386-420 (457)
444 KOG1250 Threonine/serine dehyd 27.8 6.1E+02 0.013 25.2 16.3 60 371-443 248-315 (457)
445 PRK03094 hypothetical protein; 27.8 54 0.0012 24.1 2.2 21 24-44 10-30 (80)
446 TIGR00337 PyrG CTP synthase. C 27.6 7.1E+02 0.015 25.8 11.1 41 9-49 2-45 (525)
447 PLN02285 methionyl-tRNA formyl 27.5 5.1E+02 0.011 25.0 9.6 39 110-148 84-123 (334)
448 PRK08199 thiamine pyrophosphat 27.5 3.2E+02 0.007 28.5 8.9 80 304-394 11-104 (557)
449 TIGR00064 ftsY signal recognit 27.4 1.5E+02 0.0033 27.7 5.8 41 8-48 73-113 (272)
450 PRK12311 rpsB 30S ribosomal pr 27.4 4.3E+02 0.0093 25.4 8.8 31 118-148 151-183 (326)
451 PRK14618 NAD(P)H-dependent gly 27.1 78 0.0017 30.4 4.0 33 7-44 4-36 (328)
452 PRK13982 bifunctional SbtC-lik 27.1 56 0.0012 33.2 3.0 47 6-53 69-115 (475)
453 PLN02293 adenine phosphoribosy 27.0 1.9E+02 0.0041 25.3 6.0 40 107-146 50-91 (187)
454 PRK13235 nifH nitrogenase redu 27.0 1E+02 0.0022 28.8 4.6 35 8-42 2-36 (274)
455 PRK00094 gpsA NAD(P)H-dependen 27.0 68 0.0015 30.7 3.5 33 7-44 1-33 (325)
456 KOG1432 Predicted DNA repair e 27.0 1E+02 0.0022 29.6 4.4 41 108-148 89-142 (379)
457 COG0771 MurD UDP-N-acetylmuram 26.9 95 0.0021 31.3 4.5 36 7-47 7-42 (448)
458 TIGR02195 heptsyl_trn_II lipop 26.8 5.6E+02 0.012 24.4 10.1 99 8-148 175-278 (334)
459 COG0240 GpsA Glycerol-3-phosph 26.8 82 0.0018 30.2 3.8 33 7-44 1-33 (329)
460 cd00861 ProRS_anticodon_short 26.8 1.1E+02 0.0023 22.8 4.0 36 8-43 2-39 (94)
461 cd01714 ETF_beta The electron 26.8 1.1E+02 0.0025 27.0 4.7 39 109-147 98-142 (202)
462 PRK13869 plasmid-partitioning 26.6 1E+02 0.0022 30.7 4.8 38 8-45 121-160 (405)
463 PF12617 LdpA_C: Iron-Sulfur b 26.6 2.1E+02 0.0045 24.8 5.8 49 274-326 28-76 (183)
464 PLN02924 thymidylate kinase 26.6 4.7E+02 0.01 23.4 10.3 39 6-44 15-53 (220)
465 PF06745 KaiC: KaiC; InterPro 26.6 17 0.00038 32.7 -0.6 46 8-53 20-66 (226)
466 PLN02240 UDP-glucose 4-epimera 26.5 1E+02 0.0022 29.7 4.8 34 6-43 4-37 (352)
467 PF03698 UPF0180: Uncharacteri 26.4 58 0.0013 23.9 2.2 22 24-45 10-31 (80)
468 PF01380 SIS: SIS domain SIS d 26.3 1.5E+02 0.0033 23.4 5.1 40 12-51 57-96 (131)
469 cd03412 CbiK_N Anaerobic cobal 26.2 1.1E+02 0.0024 24.7 4.1 38 287-324 2-41 (127)
470 COG0859 RfaF ADP-heptose:LPS h 26.0 2.2E+02 0.0048 27.4 6.9 99 7-148 175-278 (334)
471 TIGR00118 acolac_lg acetolacta 26.0 3E+02 0.0064 28.8 8.3 27 368-394 65-97 (558)
472 PF01993 MTD: methylene-5,6,7, 25.9 1.4E+02 0.003 27.1 4.8 41 110-150 50-96 (276)
473 PRK07525 sulfoacetaldehyde ace 25.8 2.5E+02 0.0054 29.6 7.8 28 367-394 68-101 (588)
474 PF00072 Response_reg: Respons 25.7 1.5E+02 0.0032 22.5 4.8 43 108-150 32-81 (112)
475 TIGR00853 pts-lac PTS system, 25.7 1.7E+02 0.0037 22.2 4.8 39 6-44 2-40 (95)
476 PRK05234 mgsA methylglyoxal sy 25.7 3.9E+02 0.0084 22.1 8.2 98 6-146 3-112 (142)
477 PRK12744 short chain dehydroge 25.6 2.3E+02 0.005 25.7 6.8 21 23-43 20-40 (257)
478 PRK12825 fabG 3-ketoacyl-(acyl 25.6 1.4E+02 0.0031 26.6 5.4 37 5-45 4-40 (249)
479 PF00070 Pyr_redox: Pyridine n 25.6 99 0.0021 22.3 3.4 24 23-46 10-33 (80)
480 COG1435 Tdk Thymidine kinase [ 25.5 4.7E+02 0.01 23.1 9.2 39 6-44 2-41 (201)
481 COG0569 TrkA K+ transport syst 25.5 80 0.0017 28.5 3.5 32 8-44 1-32 (225)
482 PF00282 Pyridoxal_deC: Pyrido 25.5 1.2E+02 0.0026 29.9 4.9 86 352-443 83-190 (373)
483 TIGR01283 nifE nitrogenase mol 25.5 1E+02 0.0022 31.4 4.6 35 109-146 385-419 (456)
484 PF09001 DUF1890: Domain of un 25.5 35 0.00077 27.8 1.0 34 19-52 11-44 (139)
485 TIGR01369 CPSaseII_lrg carbamo 25.4 6.4E+02 0.014 29.0 11.2 39 6-44 553-597 (1050)
486 PF14626 RNase_Zc3h12a_2: Zc3h 25.3 69 0.0015 25.4 2.5 30 22-51 10-39 (122)
487 cd01452 VWA_26S_proteasome_sub 25.3 4.6E+02 0.01 22.9 8.2 63 8-70 108-173 (187)
488 PRK06079 enoyl-(acyl carrier p 25.2 1.1E+02 0.0023 28.0 4.4 40 1-43 1-41 (252)
489 PRK05858 hypothetical protein; 25.1 3.2E+02 0.0069 28.5 8.3 25 370-394 70-100 (542)
490 PHA02519 plasmid partition pro 25.1 1.3E+02 0.0029 29.7 5.2 37 6-42 104-142 (387)
491 cd07062 Peptidase_S66_mccF_lik 25.0 1.1E+02 0.0025 29.1 4.6 73 299-395 50-124 (308)
492 PF02572 CobA_CobO_BtuR: ATP:c 24.9 4.5E+02 0.0097 22.6 10.2 102 8-128 4-105 (172)
493 cd01075 NAD_bind_Leu_Phe_Val_D 24.8 99 0.0022 27.3 3.9 32 5-41 26-57 (200)
494 PRK10037 cell division protein 24.7 1.2E+02 0.0026 27.8 4.6 36 9-44 3-39 (250)
495 PRK11914 diacylglycerol kinase 24.7 1.3E+02 0.0029 28.5 5.1 80 288-394 12-95 (306)
496 COG2099 CobK Precorrin-6x redu 24.7 1.5E+02 0.0032 27.3 4.8 34 7-45 2-35 (257)
497 PF03721 UDPG_MGDP_dh_N: UDP-g 24.6 1E+02 0.0022 26.8 3.9 32 8-44 1-32 (185)
498 PRK08293 3-hydroxybutyryl-CoA 24.6 77 0.0017 29.8 3.3 33 7-44 3-35 (287)
499 cd01977 Nitrogenase_VFe_alpha 24.6 78 0.0017 31.7 3.5 33 111-146 350-382 (415)
500 PRK10818 cell division inhibit 24.5 1.1E+02 0.0025 28.2 4.5 39 8-46 2-42 (270)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=9e-67 Score=517.57 Aligned_cols=473 Identities=47% Similarity=0.886 Sum_probs=357.5
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+........+..++|+.+|+|...++++++.+.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 35689999999999999999999999999999999999998765555432211112224899999988765678766554
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh--CCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhh
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQE--HKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLAL 162 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 162 (487)
..+.+. .+....+......+...+.+++++ .++|+||+|.++.|+..+|+.+|||.+.+++++++....+..+..
T Consensus 86 ~~~~~~---~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 86 LDTLPS---RDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred cccCCc---HHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 333333 244445555666677788888875 468999999999999999999999999999999988876554332
Q ss_pred hcCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHh
Q 046605 163 YEPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKAL 242 (487)
Q Consensus 163 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 242 (487)
..+.........+..+|+++....+...+++.+ +.....+..+...+......+..+++|||++||+.+++++...+
T Consensus 163 ~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~ 239 (491)
T PLN02534 163 HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGA---FVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAI 239 (491)
T ss_pred hcccccCCCCCceeecCCCCccccccHHHCChh---hcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhc
Confidence 222111222223456888876545666667654 21111234444444333345678999999999999999998777
Q ss_pred CCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEe
Q 046605 243 GRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVV 322 (487)
Q Consensus 243 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 322 (487)
+++++.|||+............++.....+++++.+||+.++++++|||||||.....++++.+++.+|+.++++|||++
T Consensus 240 ~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~ 319 (491)
T PLN02534 240 KKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVI 319 (491)
T ss_pred CCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 77899999997532111000000111111345799999999889999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhh
Q 046605 323 RKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYN 402 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~ 402 (487)
....... +.-...+|++|.++.++.|+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|++.||+.|
T Consensus 320 r~~~~~~--~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~n 397 (491)
T PLN02534 320 KTGEKHS--ELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLN 397 (491)
T ss_pred ecCcccc--chhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHH
Confidence 8432100 00011267888877778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhceEeecccc---cccccC-C-ccCHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 046605 403 EKIVNEVLKIGIGVGIQK---WCRIVG-D-FVKREAIVKAVNEIMM--GDRAEEMRSRAKAFGEMAKRAVENGGSSSSNL 475 (487)
Q Consensus 403 a~rv~~~~G~G~~l~~~~---~~~~~~-~-~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~ 475 (487)
|+++++.+|+|+.+.... |..+.+ + .+++++|.++|+++|. ++.++++|+||++|++.+++|+++||||..++
T Consensus 398 a~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl 477 (491)
T PLN02534 398 EKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINL 477 (491)
T ss_pred HHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999988999999885221 110111 1 4899999999999996 55578999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 046605 476 NSLIEDLSLR 485 (487)
Q Consensus 476 ~~~~~~l~~~ 485 (487)
++||+.+.+.
T Consensus 478 ~~fv~~i~~~ 487 (491)
T PLN02534 478 SILIQDVLKQ 487 (491)
T ss_pred HHHHHHHHHH
Confidence 9999999753
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2.9e-65 Score=512.91 Aligned_cols=473 Identities=61% Similarity=1.100 Sum_probs=351.2
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhh--ccCcceeEEEeeCCCccCCCCCCCc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKAS--ELGIELDVKIIKFPSAEAGLPEGWE 83 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~--~~g~~i~~~~i~~~~~~~~~~~~~~ 83 (487)
+++||+|+|+|++||++|++.||+.|+.|||+|||++++.+...+++...... ..+..+++..+++|..+++++++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 56899999999999999999999999999999999999988876665432210 1122356777777765446666544
Q ss_pred ccccch---hhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHh
Q 046605 84 NLDAIT---NEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCL 160 (487)
Q Consensus 84 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 160 (487)
...... .....++...+......+...+++++++.+||+||+|.++.|+..+|+.+|||.+.+++++++....+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 163 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCI 163 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHH
Confidence 332111 00001334444555667788888888888999999999999999999999999999999998887766554
Q ss_pred hhhcCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHH
Q 046605 161 ALYEPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRK 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 240 (487)
....+....+.......+|++|..+.+...+++.. .....+..+.........+.+.+++|++++||.++.+.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~ 239 (482)
T PLN03007 164 RVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKS 239 (482)
T ss_pred HhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHh
Confidence 43222222111112234788875444444444432 11122444555555556778899999999999998888876
Q ss_pred HhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEE
Q 046605 241 ALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIW 320 (487)
Q Consensus 241 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~ 320 (487)
....++++|||+....+.......++...+..++++.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||
T Consensus 240 ~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw 319 (482)
T PLN03007 240 FVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIW 319 (482)
T ss_pred ccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEE
Confidence 66668999999865422110001111112224578999999998899999999999988899999999999999999999
Q ss_pred EecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccch
Q 046605 321 VVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQF 400 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~ 400 (487)
+++...... +... .+|+++.++..+.|+++.+|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+
T Consensus 320 ~~~~~~~~~--~~~~-~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~ 396 (482)
T PLN03007 320 VVRKNENQG--EKEE-WLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQF 396 (482)
T ss_pred EEecCCccc--chhh-cCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhh
Confidence 998642110 1111 2888999888899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 046605 401 YNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIE 480 (487)
Q Consensus 401 ~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 480 (487)
.||+++++.+++|+.+...+......+.+++++|.++|+++|.++.+++||+||+++++.+++|+++||||..++++||+
T Consensus 397 ~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~ 476 (482)
T PLN03007 397 YNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFME 476 (482)
T ss_pred hhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999865567776653210000001268999999999999984445699999999999999999999999999999999
Q ss_pred HHhhc
Q 046605 481 DLSLR 485 (487)
Q Consensus 481 ~l~~~ 485 (487)
++.+.
T Consensus 477 ~~~~~ 481 (482)
T PLN03007 477 ELNSR 481 (482)
T ss_pred HHHhc
Confidence 98753
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-65 Score=508.88 Aligned_cols=459 Identities=34% Similarity=0.624 Sum_probs=349.7
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
.+++||+++|+|++||++||+.||+.|+.+|+.|||++++.+...+++... ...++++..+|+|.. ++++++.+.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~-~~lPdG~~~ 81 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSH-PSIPSGVEN 81 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCc-CCCCCCCcC
Confidence 467999999999999999999999999999999999999987766554311 112588888887764 367777665
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh--CCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhh
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQE--HKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLAL 162 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 162 (487)
..+.+. +....+......+...+.+++++ .+|++||+|.+..|+..+|+.+|||.+.+++++++.+.++.++..
T Consensus 82 ~~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 82 VKDLPP----SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred hhhcch----hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 444332 33444555556667777777776 467999999999999999999999999999999999998887654
Q ss_pred hcCCCCC-CCCCCc---cccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHH
Q 046605 163 YEPHKKV-SSDSEP---FVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHY 238 (487)
Q Consensus 163 ~~~~~~~-~~~~~~---~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 238 (487)
..+.... ...... ..+|+++. +...+++.+.+.......+..+..+.......+..+++|||++||+.+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 234 (477)
T PLN02863 158 EMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHL 234 (477)
T ss_pred cccccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHH
Confidence 3222111 111111 23666664 5666676542111111122223323233345667799999999999999999
Q ss_pred HHHhC-CceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCc
Q 046605 239 RKALG-RRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQN 317 (487)
Q Consensus 239 ~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 317 (487)
...++ ++++.|||+++..........++...+..++++.+||+.++++++|||||||....+.+++.+++.+|+.++++
T Consensus 235 ~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~ 314 (477)
T PLN02863 235 KKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVH 314 (477)
T ss_pred HhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCc
Confidence 87665 68999999975421100000001111113568999999998899999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccc
Q 046605 318 FIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYA 397 (487)
Q Consensus 318 ~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~ 397 (487)
|||+++..... ..... .+|+++.++.+..|+++.+|+||.+||+|+++++||||||+||++||+++|||+|++|++.
T Consensus 315 flw~~~~~~~~--~~~~~-~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 391 (477)
T PLN02863 315 FIWCVKEPVNE--ESDYS-NIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAA 391 (477)
T ss_pred EEEEECCCccc--ccchh-hCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 99999853211 00111 2888998888888999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 046605 398 EQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNS 477 (487)
Q Consensus 398 DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~ 477 (487)
||+.||+++++++|+|+.+... .++..+.+++.++|+++|. + +++||+||+++++.+++|+++||||.+++++
T Consensus 392 DQ~~na~~v~~~~gvG~~~~~~-----~~~~~~~~~v~~~v~~~m~-~-~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~ 464 (477)
T PLN02863 392 DQFVNASLLVDELKVAVRVCEG-----ADTVPDSDELARVFMESVS-E-NQVERERAKELRRAALDAIKERGSSVKDLDG 464 (477)
T ss_pred cchhhHHHHHHhhceeEEeccC-----CCCCcCHHHHHHHHHHHhh-c-cHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 9999999976678999999542 1125689999999999993 1 6799999999999999999999999999999
Q ss_pred HHHHHhhc
Q 046605 478 LIEDLSLR 485 (487)
Q Consensus 478 ~~~~l~~~ 485 (487)
||+.++++
T Consensus 465 ~v~~i~~~ 472 (477)
T PLN02863 465 FVKHVVEL 472 (477)
T ss_pred HHHHHHHh
Confidence 99999764
No 4
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.1e-63 Score=490.17 Aligned_cols=435 Identities=22% Similarity=0.390 Sum_probs=334.9
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
+++||+++|++++||++|++.||+.|+++||+|||++++.+...+.+... .+..+++..++++.. ++++++.+..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a----~~~~i~~~~l~~p~~-dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL----FPDSIVFHPLTIPPV-NGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC----CCCceEEEEeCCCCc-cCCCCCcccc
Confidence 57899999999999999999999999999999999999887766654310 112467777776532 3566654432
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhcC
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEP 165 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (487)
.+... +....+....+.+.+.+++++++.++|+||+| ++.|+..+|..+|||++.+++++++.+. +.+...
T Consensus 78 ~~l~~----~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--- 148 (442)
T PLN02208 78 SDIPI----SMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--- 148 (442)
T ss_pred cchhH----HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc---
Confidence 22211 33334455667778889999988899999999 5779999999999999999999887653 332211
Q ss_pred CCCCCCCCCccccCCCCCC-cccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHhCC
Q 046605 166 HKKVSSDSEPFVMPNLPGE-IKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKALGR 244 (487)
Q Consensus 166 ~~~~~~~~~~~~~P~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~ 244 (487)
...+ ..+|++|.. +.+...+++.+ ......+..+..++.+...+++++++|||++||+.+++++...+++
T Consensus 149 -~~~~-----~~~pglp~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~ 219 (442)
T PLN02208 149 -GKLG-----VPPPGYPSSKVLFRENDAHAL---ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHK 219 (442)
T ss_pred -cccC-----CCCCCCCCcccccCHHHcCcc---cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCC
Confidence 1111 124777652 23455555543 1111123344444444556788999999999999999999888888
Q ss_pred ceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecC
Q 046605 245 RAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRK 324 (487)
Q Consensus 245 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 324 (487)
+++.|||+...... ...+++++.+||+.++++++|||||||...++.+++.+++.+++..+.+++|++..
T Consensus 220 ~v~~vGpl~~~~~~----------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~ 289 (442)
T PLN02208 220 KVLLTGPMFPEPDT----------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKP 289 (442)
T ss_pred CEEEEeecccCcCC----------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 99999999754210 11246889999999988899999999999989999999998887778888888775
Q ss_pred CCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHH
Q 046605 325 NKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEK 404 (487)
Q Consensus 325 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~ 404 (487)
.... +.....+|++|.++.+..|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 290 ~~~~---~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~ 366 (442)
T PLN02208 290 PRGS---STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTR 366 (442)
T ss_pred CCcc---cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHH
Confidence 3210 0111238999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 046605 405 IVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMG--DRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDL 482 (487)
Q Consensus 405 rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l 482 (487)
++++.+|+|+.+... .++.+++++|.++|+++|++ +.++.+|++|+++++.+. ++|||..++++||+.+
T Consensus 367 ~~~~~~g~gv~~~~~-----~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 367 LMTEEFEVSVEVSRE-----KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEEL 437 (442)
T ss_pred HHHHHhceeEEeccc-----cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHH
Confidence 986559999999754 11249999999999999973 235679999999999875 5889999999999999
Q ss_pred hhc
Q 046605 483 SLR 485 (487)
Q Consensus 483 ~~~ 485 (487)
+++
T Consensus 438 ~~~ 440 (442)
T PLN02208 438 QEY 440 (442)
T ss_pred HHh
Confidence 764
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.1e-63 Score=491.45 Aligned_cols=441 Identities=27% Similarity=0.481 Sum_probs=334.9
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFT-TRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
.++||+++|+|++||++|++.||+.|+ .+|++|||++++.+...+.+... ...++++..+|++... ++++....
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~-glp~~~~~ 78 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDIS-GLVDPSAH 78 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCcccc-CCCCCCcc
Confidence 567999999999999999999999998 78999999999976544432211 1125888888876542 44311110
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh--CCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhh
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQE--HKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLAL 162 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 162 (487)
. .. .+......+...+++++++ .+|++||+|.++.|+..+|+.+|||.+.+++++++.+..+.+++.
T Consensus 79 -----~---~~---~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 79 -----V---VT---KIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred -----H---HH---HHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 1 11 1222333455666666665 478999999999999999999999999999999988876665532
Q ss_pred hc-CCCC-CCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHH
Q 046605 163 YE-PHKK-VSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRK 240 (487)
Q Consensus 163 ~~-~~~~-~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 240 (487)
.. +... ...+..+..+|+++. +...+++... ..........+.+......++.++++|||++||+.+++++..
T Consensus 148 ~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~--~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 148 LDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAY--LVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred hccccccccccCCCCcccCCCCc---cCHHHhhHhh--cCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 21 1110 001112345787765 4555666421 122212223333334456778899999999999999988864
Q ss_pred H--h----CCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhc
Q 046605 241 A--L----GRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEAS 314 (487)
Q Consensus 241 ~--~----~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~ 314 (487)
. + .++++.|||++..... ...+.++.+||+.++++++|||||||...++.+++.+++.+|+.+
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 291 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMS 291 (481)
T ss_pred ccccccccCCceEEecCccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHc
Confidence 2 1 2579999999753210 113467999999998889999999999999999999999999999
Q ss_pred CCcEEEEecCCCCC----------C--CcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHH
Q 046605 315 GQNFIWVVRKNKNN----------G--GEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILE 382 (487)
Q Consensus 315 ~~~~i~~~~~~~~~----------~--~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~e 382 (487)
+++|||++...... . +.+.....+|++|.++.+..|+++.+|+||.+||+|+++++||||||+||++|
T Consensus 292 ~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~E 371 (481)
T PLN02992 292 QQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLE 371 (481)
T ss_pred CCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHH
Confidence 99999999632100 0 00111224899999999999999999999999999999999999999999999
Q ss_pred HhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 046605 383 GVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAK 462 (487)
Q Consensus 383 al~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 462 (487)
|+++|||||++|+++||+.||+++++++|+|+.++.. ++.++.++|.++|+++|.+++++++|++|++++++++
T Consensus 372 al~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~------~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~ 445 (481)
T PLN02992 372 SVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDP------KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAE 445 (481)
T ss_pred HHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCC------CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999995589999999752 0258999999999999975556799999999999999
Q ss_pred HHHh--cCCCcHHHHHHHHHHHhh
Q 046605 463 RAVE--NGGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 463 ~a~~--~~g~~~~~~~~~~~~l~~ 484 (487)
+|++ +||||..++++||+.+++
T Consensus 446 ~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 446 MSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHH
Confidence 9994 699999999999999864
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.7e-63 Score=489.68 Aligned_cols=437 Identities=28% Similarity=0.473 Sum_probs=326.9
Q ss_pred CCCCCCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCC
Q 046605 1 MASGICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPE 80 (487)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~ 80 (487)
|+.+.++.||+++|++++||++||+.||+.|+.+|+.|||++++.+... .. . ...+++|..+|. ++++
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~--~---~~~~i~~~~ip~-----glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS--D---DFTDFQFVTIPE-----SLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc--c---CCCCeEEEeCCC-----CCCc
Confidence 7766788999999999999999999999999999999999999876421 11 0 012578887762 4554
Q ss_pred C-CcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh------CCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHH
Q 046605 81 G-WENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQE------HKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFS 153 (487)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 153 (487)
+ .+. ... ...+..+. ..+...+.+++++ .++++||+|.+..|+..+|+.+|||.+.+++++++.
T Consensus 69 ~~~~~---~~~---~~~~~~~~---~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~ 139 (451)
T PLN02410 69 SDFKN---LGP---IEFLHKLN---KECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATA 139 (451)
T ss_pred ccccc---cCH---HHHHHHHH---HHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHH
Confidence 2 111 111 12222222 1223333333332 356999999999999999999999999999999998
Q ss_pred HHHHHHhhhhc------CCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcch
Q 046605 154 LCAIKCLALYE------PHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSF 227 (487)
Q Consensus 154 ~~~~~~~~~~~------~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 227 (487)
+.++.++.... +..... ......+|+++. +...+++.... .....+........ ...+++++++|||
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iPg~~~---~~~~dlp~~~~--~~~~~~~~~~~~~~-~~~~~~~vlvNTf 212 (451)
T PLN02410 140 FVCRSVFDKLYANNVLAPLKEPK-GQQNELVPEFHP---LRCKDFPVSHW--ASLESIMELYRNTV-DKRTASSVIINTA 212 (451)
T ss_pred HHHHHHHHHHHhccCCCCccccc-cCccccCCCCCC---CChHHCcchhc--CCcHHHHHHHHHHh-hcccCCEEEEeCh
Confidence 87776643321 111110 112335777765 44555554310 11111222222222 3456789999999
Q ss_pred hhhcHHHHHHHHHHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHH
Q 046605 228 YELEHAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEI 307 (487)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 307 (487)
++||+.+++++....+++++.|||++..... +...+....++.+||+.++++++|||||||....+.+++.++
T Consensus 213 ~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~-------~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~el 285 (451)
T PLN02410 213 SCLESSSLSRLQQQLQIPVYPIGPLHLVASA-------PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMET 285 (451)
T ss_pred HHhhHHHHHHHHhccCCCEEEecccccccCC-------CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHH
Confidence 9999999999987676789999999754210 001112235688999999889999999999999999999999
Q ss_pred HHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcC
Q 046605 308 AMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAG 387 (487)
Q Consensus 308 ~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~G 387 (487)
+.+|+.++++|||++......+ ++....+|++|.++.+ +|.++++|+||.+||+|+++++||||||+||+.||+++|
T Consensus 286 a~gLe~s~~~FlWv~r~~~~~~--~~~~~~lp~~f~er~~-~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~G 362 (451)
T PLN02410 286 ASGLDSSNQQFLWVIRPGSVRG--SEWIESLPKEFSKIIS-GRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEG 362 (451)
T ss_pred HHHHHhcCCCeEEEEccCcccc--cchhhcCChhHHHhcc-CCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcC
Confidence 9999999999999998432100 1111127888887765 566888999999999999999999999999999999999
Q ss_pred CcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhc
Q 046605 388 VPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVEN 467 (487)
Q Consensus 388 vP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~ 467 (487)
||||++|+++||+.||+++++.+|+|+.+. . .+++++|.++|+++|.++.+++||++|+++++++++|+++
T Consensus 363 vP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~--------~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~ 433 (451)
T PLN02410 363 VPMICKPFSSDQKVNARYLECVWKIGIQVE-G--------DLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVIS 433 (451)
T ss_pred CCEEeccccccCHHHHHHHHHHhCeeEEeC-C--------cccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999965569999997 3 6899999999999997444678999999999999999999
Q ss_pred CCCcHHHHHHHHHHHhh
Q 046605 468 GGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 468 ~g~~~~~~~~~~~~l~~ 484 (487)
||||..++++||+.++.
T Consensus 434 gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 434 GGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999864
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-62 Score=488.41 Aligned_cols=440 Identities=26% Similarity=0.451 Sum_probs=323.5
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHH--HHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKL--FTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGW 82 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~ 82 (487)
..+.||+|+|+|++||++|++.||+. |++||++|||++++.+.+.+++... ....+++..+| ++++++.
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~----~~~~~~~~~~~-----~glp~~~ 76 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK----PRRPVDLVFFS-----DGLPKDD 76 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC----CCCceEEEECC-----CCCCCCc
Confidence 45689999999999999999999999 5599999999999987665533210 01124444443 2455443
Q ss_pred cccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhh
Q 046605 83 ENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLAL 162 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 162 (487)
+. .. ..++.. ..+.+...+++++++.+||+||+|.++.|+..+|+.+|||.+.++++++..+..+.++..
T Consensus 77 ~~----~~---~~~~~~---~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~ 146 (456)
T PLN02210 77 PR----AP---ETLLKS---LNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYM 146 (456)
T ss_pred cc----CH---HHHHHH---HHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhh
Confidence 11 11 122221 222345667778887889999999999999999999999999999988888777665422
Q ss_pred h-cCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCc--hHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHH
Q 046605 163 Y-EPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDN--DFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYR 239 (487)
Q Consensus 163 ~-~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 239 (487)
. .+............+|+++. +..++++.+ +.... .+..+.....+....+..+++|||.+||+++++.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 220 (456)
T PLN02210 147 KTNSFPDLEDLNQTVELPALPL---LEVRDLPSF---MLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMA 220 (456)
T ss_pred ccCCCCcccccCCeeeCCCCCC---CChhhCChh---hhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHh
Confidence 1 11111111112245777764 455666654 22221 233344444444556788999999999999998886
Q ss_pred HHhCCceEEeccccCCCc--Cchhh--hhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcC
Q 046605 240 KALGRRAWHIGPVSLCNR--NFEDK--ALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASG 315 (487)
Q Consensus 240 ~~~~~~~~~vGp~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~ 315 (487)
. . +++++|||+++... ..... .+.....+..++++.+|++.++++++|||||||....+.+++.+++.+|+.++
T Consensus 221 ~-~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~ 298 (456)
T PLN02210 221 D-L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRG 298 (456)
T ss_pred h-c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 6 3 57999999975210 00000 00000012345779999999888899999999999999999999999999999
Q ss_pred CcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCc
Q 046605 316 QNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPV 395 (487)
Q Consensus 316 ~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 395 (487)
++|||+++..... + .++.+.+....++.++++|+||.+||+|+++++||||||+||++||+++|||+|++|+
T Consensus 299 ~~flw~~~~~~~~---~-----~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~ 370 (456)
T PLN02210 299 VPFLWVIRPKEKA---Q-----NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPS 370 (456)
T ss_pred CCEEEEEeCCccc---c-----chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccc
Confidence 9999999753211 0 2334444432355578899999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 046605 396 YAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNL 475 (487)
Q Consensus 396 ~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~ 475 (487)
+.||+.||+++++.+|+|+.+... +.++.+++++|.++|+++|.++.++++|+||++|++..++|+++||||..++
T Consensus 371 ~~DQ~~na~~~~~~~g~G~~l~~~----~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l 446 (456)
T PLN02210 371 WTDQPIDARLLVDVFGIGVRMRND----AVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNL 446 (456)
T ss_pred ccccHHHHHHHHHHhCeEEEEecc----ccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999996349999999642 1123689999999999999755466899999999999999999999999999
Q ss_pred HHHHHHHh
Q 046605 476 NSLIEDLS 483 (487)
Q Consensus 476 ~~~~~~l~ 483 (487)
++||+.++
T Consensus 447 ~~~v~~~~ 454 (456)
T PLN02210 447 DLFISDIT 454 (456)
T ss_pred HHHHHHHh
Confidence 99999885
No 8
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.4e-62 Score=487.05 Aligned_cols=457 Identities=26% Similarity=0.465 Sum_probs=331.4
Q ss_pred CCCCCCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhh---hh-hhccCc-ceeEEEeeCCCcc
Q 046605 1 MASGICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSI---QK-ASELGI-ELDVKIIKFPSAE 75 (487)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~---~~-~~~~g~-~i~~~~i~~~~~~ 75 (487)
|+++..+.||+++|+|++||++||+.||+.|+.+|..|||++++.+...+.+.. .. ....+. .++|..+|
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 778878899999999999999999999999999999999999997665544210 00 000111 24444433
Q ss_pred CCCCCCCcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh----CCC-CEEEeCCCCcchHHHHHHhCCCeEEEechh
Q 046605 76 AGLPEGWENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQE----HKP-DCLVADMFFPWATDAAAKFGIPRLVFHGTS 150 (487)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~p-DlVI~D~~~~~~~~~A~~~giP~v~~~~~~ 150 (487)
++++++.+.. ... ..++..+. ..+...+.+++++ .+| ++||+|.+..|+..+|+++|||.+.+++++
T Consensus 76 dglp~~~~~~---~~~--~~~~~~~~---~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~ 147 (480)
T PLN02555 76 DGWAEDDPRR---QDL--DLYLPQLE---LVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQS 147 (480)
T ss_pred CCCCCCcccc---cCH--HHHHHHHH---HhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeeccc
Confidence 2555443321 110 11222221 1234444444442 244 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhc-CCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhh
Q 046605 151 FFSLCAIKCLALYE-PHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYE 229 (487)
Q Consensus 151 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 229 (487)
++.+.++.++.... +......+..+..+|++|. +..++++.+.........+...+.+......+++++++|||++
T Consensus 148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~e 224 (480)
T PLN02555 148 CACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQE 224 (480)
T ss_pred HHHHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHH
Confidence 99988887763211 1111111112345888875 6677787762110011122222323334556788999999999
Q ss_pred hcHHHHHHHHHHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHH
Q 046605 230 LEHAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAM 309 (487)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~ 309 (487)
||+.+++.+.... + ++.|||++........ ..+...+..+.++.+||+.++++++|||||||+...+.+++.+++.
T Consensus 225 LE~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~ 300 (480)
T PLN02555 225 LEKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAY 300 (480)
T ss_pred HhHHHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHH
Confidence 9999998886543 3 9999999753211000 0011112245689999999988899999999999999999999999
Q ss_pred HHHhcCCcEEEEecCCCCCCCcccc-cccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCC
Q 046605 310 GLEASGQNFIWVVRKNKNNGGEEEK-EDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGV 388 (487)
Q Consensus 310 a~~~~~~~~i~~~~~~~~~~~~~~~-~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~Gv 388 (487)
+|+.++++|||++...... ... ...+|+++.++. .+|+++++|+||.+||.|+++++||||||+||+.||+++||
T Consensus 301 ~l~~~~~~flW~~~~~~~~---~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GV 376 (480)
T PLN02555 301 GVLNSGVSFLWVMRPPHKD---SGVEPHVLPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGV 376 (480)
T ss_pred HHHhcCCeEEEEEecCccc---ccchhhcCChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCC
Confidence 9999999999998742110 000 012777776544 46788899999999999999999999999999999999999
Q ss_pred cEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcC
Q 046605 389 PLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENG 468 (487)
Q Consensus 389 P~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~ 468 (487)
|||++|+++||+.||+++++.+|+|+.+.... +..+.++.++|.++|+++|+++.++++|+||++|+++.++|+++|
T Consensus 377 P~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~---~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~eg 453 (480)
T PLN02555 377 PVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE---AENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEG 453 (480)
T ss_pred CEEeCCCccccHHHHHHHHHHhCceEEccCCc---cccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999976679999995210 001268999999999999976657899999999999999999999
Q ss_pred CCcHHHHHHHHHHHhh
Q 046605 469 GSSSSNLNSLIEDLSL 484 (487)
Q Consensus 469 g~~~~~~~~~~~~l~~ 484 (487)
|||..++++||+.+.+
T Consensus 454 GSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 454 GSSDRNFQEFVDKLVR 469 (480)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999999865
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.3e-62 Score=483.29 Aligned_cols=453 Identities=26% Similarity=0.442 Sum_probs=327.9
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCCc-cchhhhhhhhhccCcceeEEEeeCCCccCCCCCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRG--VKASVITTPGNA-PHLSRSIQKASELGIELDVKIIKFPSAEAGLPEG 81 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~-~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~ 81 (487)
|++.||+++|++++||++||+.||+.|+.+| ..|||++++... ..+............+++|..+|.... .+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc
Confidence 3568999999999999999999999999998 999999998765 222222211111112589999983211 1110
Q ss_pred CcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhC----CC-CEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHH
Q 046605 82 WENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEH----KP-DCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCA 156 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~p-DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~ 156 (487)
....+... .++..+......+...+.+++++. +| ++||+|.+..|+..+|+.+|||.+.+++++++.+.+
T Consensus 78 -~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~ 152 (468)
T PLN02207 78 -GGTQSVEA----YVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAM 152 (468)
T ss_pred -ccccCHHH----HHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 01111111 111111111122234455555532 34 899999999999999999999999999999988887
Q ss_pred HHHhhhhc-CCCCC--CCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHH
Q 046605 157 IKCLALYE-PHKKV--SSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHA 233 (487)
Q Consensus 157 ~~~~~~~~-~~~~~--~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~ 233 (487)
+.+..... +.... +..+.+..+|+++.. +...+++.+ +.....+..+. +......+++.+++|||++||.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~--l~~~dlp~~---~~~~~~~~~~~-~~~~~~~~~~~vlvNtf~~LE~~ 226 (468)
T PLN02207 153 MQYLADRHSKDTSVFVRNSEEMLSIPGFVNP--VPANVLPSA---LFVEDGYDAYV-KLAILFTKANGILVNSSFDIEPY 226 (468)
T ss_pred HHHhhhccccccccCcCCCCCeEECCCCCCC--CChHHCcch---hcCCccHHHHH-HHHHhcccCCEEEEEchHHHhHH
Confidence 77654321 11111 111133458887322 677777765 32222233333 33335677889999999999999
Q ss_pred HHHHHHH-HhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHH
Q 046605 234 YADHYRK-ALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLE 312 (487)
Q Consensus 234 ~~~~~~~-~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~ 312 (487)
+++.+.. +..++++.|||++........ ......++++.+||++++++++|||||||....+.+++.+++.+|+
T Consensus 227 ~~~~~~~~~~~p~v~~VGPl~~~~~~~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~ 301 (468)
T PLN02207 227 SVNHFLDEQNYPSVYAVGPIFDLKAQPHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLE 301 (468)
T ss_pred HHHHHHhccCCCcEEEecCCcccccCCCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHH
Confidence 8888855 344789999999754211100 0001124679999999988899999999999999999999999999
Q ss_pred hcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEec
Q 046605 313 ASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVT 392 (487)
Q Consensus 313 ~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~ 392 (487)
.++++|||++..... .....+|++|+++.+ +|..+++|+||.+||+|+++++||||||+||++||+++|||||+
T Consensus 302 ~~~~~flW~~r~~~~-----~~~~~lp~~f~er~~-~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~ 375 (468)
T PLN02207 302 LCQYRFLWSLRTEEV-----TNDDLLPEGFLDRVS-GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVT 375 (468)
T ss_pred HCCCcEEEEEeCCCc-----cccccCCHHHHhhcC-CCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEe
Confidence 999999999985321 111238888887654 56688899999999999999999999999999999999999999
Q ss_pred cCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 046605 393 WPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSS 472 (487)
Q Consensus 393 ~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~ 472 (487)
+|+++||+.||+++++.+|+|+.+..+. ..+.++.++.++|.++|+++|.+ .+++||+||+++++.+++|+++||||+
T Consensus 376 ~P~~~DQ~~Na~~~~~~~gvGv~~~~~~-~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~ 453 (468)
T PLN02207 376 WPMYAEQQLNAFLMVKELKLAVELKLDY-RVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSF 453 (468)
T ss_pred cCccccchhhHHHHHHHhCceEEEeccc-ccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999998865699999884210 00011256999999999999963 367999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 046605 473 SNLNSLIEDLSL 484 (487)
Q Consensus 473 ~~~~~~~~~l~~ 484 (487)
.++++||+.+..
T Consensus 454 ~~l~~~v~~~~~ 465 (468)
T PLN02207 454 AAIEKFIHDVIG 465 (468)
T ss_pred HHHHHHHHHHHh
Confidence 999999999865
No 10
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.2e-62 Score=480.61 Aligned_cols=434 Identities=27% Similarity=0.477 Sum_probs=323.4
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCC-Cc
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEG-WE 83 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~-~~ 83 (487)
+++.||+++|++++||++||+.||+.|+.+|+.|||++++.+...+... ...+++|+.+| ++++++ .+
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~ 71 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFS 71 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcccc
Confidence 5678999999999999999999999999999999999998765444221 12258888886 255542 22
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh----CCC-CEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHH
Q 046605 84 NLDAITNEVNRELIVKFYMATTKLQKPLEQLLQE----HKP-DCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIK 158 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~p-DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 158 (487)
.... . ..++.. ....+...+.+++++ .+| |+||+|.+..|+..+|+.+|||.+.+++++++.+.++.
T Consensus 72 ~~~~--~---~~~~~~---~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~ 143 (449)
T PLN02173 72 SAGS--V---PEYLQN---FKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINY 143 (449)
T ss_pred cccC--H---HHHHHH---HHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHH
Confidence 2111 1 122222 222344555555554 355 99999999999999999999999999998888776554
Q ss_pred HhhhhcCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHH
Q 046605 159 CLALYEPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHY 238 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 238 (487)
+.... . ......+|++|. +...+++.+..-......+.....+......+++.+++|||++||+++++++
T Consensus 144 ~~~~~-~------~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 213 (449)
T PLN02173 144 LSYIN-N------GSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELL 213 (449)
T ss_pred hHHhc-c------CCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHH
Confidence 32110 0 012234678775 5566777652110111112222223334566788999999999999999888
Q ss_pred HHHhCCceEEeccccCCCc-CchhhhhhCC--CCC--CChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHh
Q 046605 239 RKALGRRAWHIGPVSLCNR-NFEDKALRGK--QAS--VDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEA 313 (487)
Q Consensus 239 ~~~~~~~~~~vGp~~~~~~-~~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~ 313 (487)
... .+++.|||+++... .......... ..+ ..++++.+||+.++++++|||||||....+.+++.+++.+|
T Consensus 214 ~~~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL-- 289 (449)
T PLN02173 214 SKV--CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI-- 289 (449)
T ss_pred Hhc--CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--
Confidence 653 47999999974310 0000000000 001 12456999999998899999999999999999999999999
Q ss_pred cCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEecc
Q 046605 314 SGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTW 393 (487)
Q Consensus 314 ~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 393 (487)
.+.+|+|++...... .+|+++.++.++.|+++++|+||.+||+|+++++||||||+||++||+++|||||++
T Consensus 290 s~~~flWvvr~~~~~--------~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~ 361 (449)
T PLN02173 290 SNFSYLWVVRASEES--------KLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAM 361 (449)
T ss_pred cCCCEEEEEeccchh--------cccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEec
Confidence 677899999753211 178888877767899999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 046605 394 PVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSS 473 (487)
Q Consensus 394 P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~ 473 (487)
|+++||+.||+++++.+|+|+.+..+ +.++.++.++|.++|+++|.++..+++|+||++++++.++|+++||||..
T Consensus 362 P~~~DQ~~Na~~v~~~~g~Gv~v~~~----~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~ 437 (449)
T PLN02173 362 PQWTDQPMNAKYIQDVWKVGVRVKAE----KESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDI 437 (449)
T ss_pred CchhcchHHHHHHHHHhCceEEEeec----ccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999997566999999753 11124799999999999997555678999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 046605 474 NLNSLIEDLS 483 (487)
Q Consensus 474 ~~~~~~~~l~ 483 (487)
++++||+.+.
T Consensus 438 ~l~~~v~~~~ 447 (449)
T PLN02173 438 NINTFVSKIQ 447 (449)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 11
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.4e-62 Score=477.83 Aligned_cols=438 Identities=22% Similarity=0.422 Sum_probs=332.5
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
..++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+. .. ...++++..+++|.. ++++++.+.
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~--~~~~~~v~~~~~p~~-~glp~g~e~ 77 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NL--FPHNIVFRSVTVPHV-DGLPVGTET 77 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--cc--CCCCceEEEEECCCc-CCCCCcccc
Confidence 3678999999999999999999999999999999999999876554432 10 111333444444432 266665544
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhc
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYE 164 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (487)
..+... .....+......+.+.+.+++++.+||+||+|. ..|+..+|+.+|||.+.+++++++.+.++..
T Consensus 78 ~~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~----- 147 (453)
T PLN02764 78 VSEIPV----TSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV----- 147 (453)
T ss_pred cccCCh----hHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-----
Confidence 333332 223344555566778888888888899999994 7799999999999999999999988877642
Q ss_pred CCCCCCCCCCccccCCCCCC-cccccCCCCCCcCCCC--CCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHH
Q 046605 165 PHKKVSSDSEPFVMPNLPGE-IKLTRNQLPDPAKQDM--GDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKA 241 (487)
Q Consensus 165 ~~~~~~~~~~~~~~P~~~~~-~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 241 (487)
+....+ ...|++|.. +.+...+++.+..... ....+..+..++......+..+++|||++||+.+++++...
T Consensus 148 ~~~~~~-----~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 148 PGGELG-----VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred ccccCC-----CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 111111 123677632 1234444443311101 11123344455545566788999999999999999999775
Q ss_pred hCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEE
Q 046605 242 LGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWV 321 (487)
Q Consensus 242 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~ 321 (487)
.+++++.|||++..... ....+.++.+|||.++++++|||||||....+.+++.+++.+|+..+.+++|+
T Consensus 223 ~~~~v~~VGPL~~~~~~----------~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv 292 (453)
T PLN02764 223 CRKKVLLTGPVFPEPDK----------TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVA 292 (453)
T ss_pred cCCcEEEeccCccCccc----------cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 45789999999653210 01135689999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchh
Q 046605 322 VRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFY 401 (487)
Q Consensus 322 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~ 401 (487)
+...... +.....+|++|+++.++.++++.+|+||.+||+|+++++||||||+||++||+++|||+|++|++.||+.
T Consensus 293 ~r~~~~~---~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 369 (453)
T PLN02764 293 VKPPRGS---STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVL 369 (453)
T ss_pred EeCCCCC---cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHH
Confidence 9853211 1112238999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 046605 402 NEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMG--DRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLI 479 (487)
Q Consensus 402 ~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 479 (487)
||+++++.+|+|+.+... ..+.++.++|.++|+++|++ +..+.+|++|+++++.++ +||||..++++||
T Consensus 370 na~~l~~~~g~gv~~~~~-----~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv 440 (453)
T PLN02764 370 NTRLLSDELKVSVEVARE-----ETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFI 440 (453)
T ss_pred HHHHHHHHhceEEEeccc-----cCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHH
Confidence 999996568999987532 01258999999999999973 335679999999998886 7899999999999
Q ss_pred HHHhh
Q 046605 480 EDLSL 484 (487)
Q Consensus 480 ~~l~~ 484 (487)
+.++.
T Consensus 441 ~~~~~ 445 (453)
T PLN02764 441 ESLQD 445 (453)
T ss_pred HHHHH
Confidence 99865
No 12
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.1e-62 Score=480.79 Aligned_cols=458 Identities=29% Similarity=0.455 Sum_probs=336.5
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
..+.||+++|++++||++||+.||+.|+.||+.|||++++.+...+.+... .....++++.+|+|.. ++++++.+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~---~~~~~i~~~~lp~p~~-dglp~~~~~ 79 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS---QLSSSITLVSFPLPSV-PGLPSSAES 79 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc---cCCCCeeEEECCCCcc-CCCCCCccc
Confidence 345799999999999999999999999999999999999977655543211 0122589999998765 367665443
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhc
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYE 164 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (487)
..+... .....+......+.+.+.+++++.++++||+|.+..|+..+|+.+|||.+.+++++++.+.++.+.....
T Consensus 80 ~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 80 STDVPY----TKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred ccccch----hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 222221 1122333455566777888888778999999999999999999999999999999998887765442221
Q ss_pred CCCCCCCCCCcc-ccCCCCC---CcccccCCCCCCcCCCCCC-chHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHH
Q 046605 165 PHKKVSSDSEPF-VMPNLPG---EIKLTRNQLPDPAKQDMGD-NDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYR 239 (487)
Q Consensus 165 ~~~~~~~~~~~~-~~P~~~~---~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 239 (487)
.........+.. .+|++.+ .+.+...+++.+....... ..+..+. +......++.++++|||++||+.+++.+.
T Consensus 156 ~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~ 234 (472)
T PLN02670 156 EGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLS 234 (472)
T ss_pred hcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHH
Confidence 111111111111 2444322 1224445566542111111 1122333 33334567889999999999999999997
Q ss_pred HHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEE
Q 046605 240 KALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFI 319 (487)
Q Consensus 240 ~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i 319 (487)
..++++++.|||+.+....... ..........++.+||+.++++++|||||||+...+.+++.+++.+|+.++++||
T Consensus 235 ~~~~~~v~~VGPl~~~~~~~~~---~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~Fl 311 (472)
T PLN02670 235 DLYRKPIIPIGFLPPVIEDDEE---DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFF 311 (472)
T ss_pred HhhCCCeEEEecCCcccccccc---ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEE
Confidence 7666789999999653110000 0000001125799999999888999999999999999999999999999999999
Q ss_pred EEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccc
Q 046605 320 WVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQ 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ 399 (487)
|++...... .++....+|++|.++.+..++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||
T Consensus 312 Wv~r~~~~~--~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 389 (472)
T PLN02670 312 WVLRNEPGT--TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQ 389 (472)
T ss_pred EEEcCCccc--ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhcc
Confidence 999853210 011112389999998888889999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 046605 400 FYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLI 479 (487)
Q Consensus 400 ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 479 (487)
+.||+++ +++|+|+.+... +.++.++.++|.++|+++|.++.+++||+||+++++.++ ..++-...+++|+
T Consensus 390 ~~Na~~v-~~~g~Gv~l~~~----~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~ 460 (472)
T PLN02670 390 GLNTRLL-HGKKLGLEVPRD----ERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELV 460 (472)
T ss_pred HHHHHHH-HHcCeeEEeecc----ccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHH
Confidence 9999999 589999999753 112358999999999999974434589999999999998 3455667788888
Q ss_pred HHHhhc
Q 046605 480 EDLSLR 485 (487)
Q Consensus 480 ~~l~~~ 485 (487)
+.|.+.
T Consensus 461 ~~l~~~ 466 (472)
T PLN02670 461 HYLREN 466 (472)
T ss_pred HHHHHh
Confidence 888764
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=8.4e-62 Score=485.08 Aligned_cols=450 Identities=27% Similarity=0.506 Sum_probs=335.6
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCC----CeEEEEeCCCCcc----chhhhhhhhhccCcceeEEEeeCCCccC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRG----VKASVITTPGNAP----HLSRSIQKASELGIELDVKIIKFPSAEA 76 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~v~~~~~~~~~~g~~i~~~~i~~~~~~~ 76 (487)
|++.||+|+|++++||++||+.||+.|+.+| +.|||++++.... .+..........+.+++|..+|++.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE--- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---
Confidence 3577999999999999999999999999997 7999999886533 2332211111112258888887432
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhC--CCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHH
Q 046605 77 GLPEGWENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEH--KPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSL 154 (487)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 154 (487)
.+++.+. . ... +......+.+.+++++++. ++++||+|.+..|+..+|+.+|||.+.+++++++.+
T Consensus 78 -~p~~~e~-----~---~~~---~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~ 145 (480)
T PLN00164 78 -PPTDAAG-----V---EEF---ISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAML 145 (480)
T ss_pred -CCCcccc-----H---HHH---HHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHH
Confidence 2222211 1 111 2223334556677777653 569999999999999999999999999999999998
Q ss_pred HHHHHhhhhcCC--CCCCCCCCccccCCCCCCcccccCCCCCCcCCCCC-CchHHHHHHHhhhcccCccEEEEcchhhhc
Q 046605 155 CAIKCLALYEPH--KKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMG-DNDFSRFMKASDDSDLRSYGVVVNSFYELE 231 (487)
Q Consensus 155 ~~~~~~~~~~~~--~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 231 (487)
.++.++...... ........+..+|+++. +...+++.+ +.. .......+........++.++++|||++||
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE 219 (480)
T PLN00164 146 ALMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAP---VMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELE 219 (480)
T ss_pred HHHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCch---hcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhh
Confidence 888776432110 00111012334788875 566777764 221 111122222233445678899999999999
Q ss_pred HHHHHHHHHHh------CCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHH
Q 046605 232 HAYADHYRKAL------GRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLM 305 (487)
Q Consensus 232 ~~~~~~~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~ 305 (487)
+.+++++.... .++++.|||+....... .....++++.+||+.++++++|||||||....+.+++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~--------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ 291 (480)
T PLN00164 220 PGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTP--------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVR 291 (480)
T ss_pred HHHHHHHHhccccccCCCCceEEeCCCccccccC--------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHH
Confidence 99999887642 15799999997432110 01124578999999998899999999999888999999
Q ss_pred HHHHHHHhcCCcEEEEecCCCCC----CCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHH
Q 046605 306 EIAMGLEASGQNFIWVVRKNKNN----GGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSIL 381 (487)
Q Consensus 306 ~~~~a~~~~~~~~i~~~~~~~~~----~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~ 381 (487)
+++.+|+.++++|||++...... ..++.....+|+++.++.+..++++.+|+||.+||+|+++++||||||+||++
T Consensus 292 ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~ 371 (480)
T PLN00164 292 EIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVL 371 (480)
T ss_pred HHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHH
Confidence 99999999999999999853210 00011223488899988888999999999999999999999999999999999
Q ss_pred HHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHH
Q 046605 382 EGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGD--RAEEMRSRAKAFGE 459 (487)
Q Consensus 382 eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~~~~a~~l~~ 459 (487)
||+++|||||++|+++||+.||+++++.+|+|+.+.... +.++.+++++|.++|+++|.++ ....+|++|+++++
T Consensus 372 Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~---~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~ 448 (480)
T PLN00164 372 ESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDR---KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKA 448 (480)
T ss_pred HHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEecccc---ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999988766789999996320 0112479999999999999732 25789999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhhcc
Q 046605 460 MAKRAVENGGSSSSNLNSLIEDLSLRR 486 (487)
Q Consensus 460 ~~~~a~~~~g~~~~~~~~~~~~l~~~~ 486 (487)
++++|+++||||.+++++||+.+.+.+
T Consensus 449 ~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 449 ACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998765
No 14
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-61 Score=476.22 Aligned_cols=444 Identities=25% Similarity=0.491 Sum_probs=334.3
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCCccch--hhhhhhhhccCcceeEEEeeCCCccCCC-CC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTR-GVKASVITTPGNAPHL--SRSIQKASELGIELDVKIIKFPSAEAGL-PE 80 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v--~~~~~~~~~~g~~i~~~~i~~~~~~~~~-~~ 80 (487)
|.+.||+++|+|++||++|++.||+.|+.+ |..|||++++.....+ ......... ..++++..+|++..+ ++ +.
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~-~~~i~~~~lp~~~~~-~l~~~ 78 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAA-RTTCQITEIPSVDVD-NLVEP 78 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccC-CCceEEEECCCCccc-cCCCC
Confidence 346799999999999999999999999987 9999999887655332 111111101 115889999865432 33 11
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhC--CCCEEEeCCCCcchHHHHHHhCCC-eEEEechhHHHHHHH
Q 046605 81 GWENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEH--KPDCLVADMFFPWATDAAAKFGIP-RLVFHGTSFFSLCAI 157 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pDlVI~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~ 157 (487)
+ . . ....+......+...+.+++++. ++++||+|.+..|+..+|+.+||| .+.+++++++.+.++
T Consensus 79 ~----~---~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~ 146 (470)
T PLN03015 79 D----A---T-----IFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVM 146 (470)
T ss_pred C----c---c-----HHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHH
Confidence 1 0 1 11123334445666777777753 789999999999999999999999 588888888877676
Q ss_pred HHhhhhcCC-CC-CCCCCCccccCCCCCCcccccCCCCCCcCCCCCCc-hHHHHHHHhhhcccCccEEEEcchhhhcHHH
Q 046605 158 KCLALYEPH-KK-VSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDN-DFSRFMKASDDSDLRSYGVVVNSFYELEHAY 234 (487)
Q Consensus 158 ~~~~~~~~~-~~-~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~ 234 (487)
.+++..... .. ......+..+|++|. +...+++... ..... .+..+.... ....+++++++|||++||+.+
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~--~~~~~~~~~~~~~~~-~~~~~a~gvlvNTf~eLE~~~ 220 (470)
T PLN03015 147 VYLPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETM--LDRSDQQYKECVRSG-LEVPMSDGVLVNTWEELQGNT 220 (470)
T ss_pred HhhhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhh--cCCCcHHHHHHHHHH-HhcccCCEEEEechHHHhHHH
Confidence 665332111 11 001123456888875 6667777541 11211 233444333 346788999999999999999
Q ss_pred HHHHHHHh------CCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHH
Q 046605 235 ADHYRKAL------GRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIA 308 (487)
Q Consensus 235 ~~~~~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~ 308 (487)
++.+...+ .++++.|||++.... ....+.++.+||+.++++++|||||||....+.+++.+++
T Consensus 221 ~~~l~~~~~~~~~~~~~v~~VGPl~~~~~-----------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela 289 (470)
T PLN03015 221 LAALREDMELNRVMKVPVYPIGPIVRTNV-----------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELA 289 (470)
T ss_pred HHHHHhhcccccccCCceEEecCCCCCcc-----------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHH
Confidence 99887642 256999999974211 0112457999999998899999999999999999999999
Q ss_pred HHHHhcCCcEEEEecCCCCC-----CCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHH
Q 046605 309 MGLEASGQNFIWVVRKNKNN-----GGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEG 383 (487)
Q Consensus 309 ~a~~~~~~~~i~~~~~~~~~-----~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~ea 383 (487)
.+|+.++++|||++...... .+.+.....+|++|.++.+..++++.+|+||.+||+|+++++||||||+||+.||
T Consensus 290 ~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Ea 369 (470)
T PLN03015 290 WGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLES 369 (470)
T ss_pred HHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHH
Confidence 99999999999999742110 0001122248999999888888999999999999999999999999999999999
Q ss_pred hhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHH
Q 046605 384 VTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMM--GDRAEEMRSRAKAFGEMA 461 (487)
Q Consensus 384 l~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~--~~~~~~~~~~a~~l~~~~ 461 (487)
+++|||||++|++.||+.||+++++.+|+|+.+... ..++.++.++|.++|+++|. ++.++++|+||++|+++.
T Consensus 370 i~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~----~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a 445 (470)
T PLN03015 370 LTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSEL----PSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSS 445 (470)
T ss_pred HHcCCCEEecccccchHHHHHHHHHHhCeeEEeccc----ccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999997789999999521 01126899999999999996 245789999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHh
Q 046605 462 KRAVENGGSSSSNLNSLIEDLS 483 (487)
Q Consensus 462 ~~a~~~~g~~~~~~~~~~~~l~ 483 (487)
++|+++||||.+++++|+..+.
T Consensus 446 ~~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 446 ERAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHHhcCCCcHHHHHHHHHHhcc
Confidence 9999999999999999998864
No 15
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-61 Score=477.38 Aligned_cols=428 Identities=26% Similarity=0.437 Sum_probs=317.8
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
++.||+++|+|++||++||+.||+.|+.+|++|||++++.+...+.+.... ..+++|+.+|. +++++.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~~~--- 72 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDDDP--- 72 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCCCc---
Confidence 457999999999999999999999999999999999999876555443111 12588888763 222211
Q ss_pred ccchhhhhHHHHHHHHHHHH-hhhHHHHHHHhhC----CCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHh
Q 046605 86 DAITNEVNRELIVKFYMATT-KLQKPLEQLLQEH----KPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCL 160 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~----~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 160 (487)
+. +.. .+..... .+...+.+++++. ++++||+|.+..|+..+|+++|||.+.++++++..+..+.++
T Consensus 73 ---~~----~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~ 144 (448)
T PLN02562 73 ---PR----DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAI 144 (448)
T ss_pred ---cc----cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHH
Confidence 01 111 2222333 3555666666542 348999999999999999999999999999998887776655
Q ss_pred hhhcCCCCCCC---C--CCc-cccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHH
Q 046605 161 ALYEPHKKVSS---D--SEP-FVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAY 234 (487)
Q Consensus 161 ~~~~~~~~~~~---~--~~~-~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~ 234 (487)
.........+. + ..+ ..+|+++. +..++++.+.............+.+..+...++.++++|||.+||+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 221 (448)
T PLN02562 145 PELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDD 221 (448)
T ss_pred HHHhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHH
Confidence 43221111111 1 111 24777765 556667764111111112223333334456678899999999999988
Q ss_pred HHHHHH----HhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcc-cCCHHHHHHHHH
Q 046605 235 ADHYRK----ALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVA-NFTSAQLMEIAM 309 (487)
Q Consensus 235 ~~~~~~----~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~ 309 (487)
++.... +..++++.|||+....... .........+.++.+||+.++++++|||||||+. ..+.+++.+++.
T Consensus 222 ~~~~~~~~~~~~~~~v~~iGpl~~~~~~~----~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~ 297 (448)
T PLN02562 222 VKNHQASYNNGQNPQILQIGPLHNQEATT----ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLAL 297 (448)
T ss_pred HHHHHhhhccccCCCEEEecCcccccccc----cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHH
Confidence 876653 2357899999997642110 0000011224567799999988899999999986 578999999999
Q ss_pred HHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCc
Q 046605 310 GLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVP 389 (487)
Q Consensus 310 a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP 389 (487)
+|++++++|||++...... .+|+++.++. ++|+++++|+||.+||+|+++++||||||+||+.||+++|||
T Consensus 298 ~l~~~g~~fiW~~~~~~~~--------~l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP 368 (448)
T PLN02562 298 ALEASGRPFIWVLNPVWRE--------GLPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKR 368 (448)
T ss_pred HHHHCCCCEEEEEcCCchh--------hCCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCC
Confidence 9999999999999753210 1777776654 467899999999999999999999999999999999999999
Q ss_pred EeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCC
Q 046605 390 LVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGG 469 (487)
Q Consensus 390 ~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g 469 (487)
+|++|+++||+.||+++++.+|+|+.+. .++.++|.++|+++|. +++||+||+++++++.++ ++||
T Consensus 369 ~l~~P~~~DQ~~na~~~~~~~g~g~~~~----------~~~~~~l~~~v~~~l~---~~~~r~~a~~l~~~~~~~-~~gG 434 (448)
T PLN02562 369 LLCYPVAGDQFVNCAYIVDVWKIGVRIS----------GFGQKEVEEGLRKVME---DSGMGERLMKLRERAMGE-EARL 434 (448)
T ss_pred EEeCCcccchHHHHHHHHHHhCceeEeC----------CCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhc-CCCC
Confidence 9999999999999999964479988873 5799999999999998 789999999999999876 6789
Q ss_pred CcHHHHHHHHHHHh
Q 046605 470 SSSSNLNSLIEDLS 483 (487)
Q Consensus 470 ~~~~~~~~~~~~l~ 483 (487)
||.+|+++||+.++
T Consensus 435 SS~~nl~~~v~~~~ 448 (448)
T PLN02562 435 RSMMNFTTLKDELK 448 (448)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999874
No 16
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.7e-61 Score=472.52 Aligned_cols=433 Identities=24% Similarity=0.419 Sum_probs=328.2
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
.+.||+++|+|++||++||+.||+.|+++|++|||++++.+...+++... ....++|..+++|.. ++++++.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~-dGLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPV-DGLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCc-CCCCCccccc
Confidence 46899999999999999999999999999999999999987665554311 112478877776643 3666654433
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhcC
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEP 165 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (487)
.+... .....+......+.+.++++++..+||+||+|. +.|+..+|+.+|||++.+++++++.+.++.+...
T Consensus 78 ~~l~~----~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~--- 149 (446)
T PLN00414 78 SDLPN----STKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA--- 149 (446)
T ss_pred ccchh----hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh---
Confidence 22222 223344555666777888888878899999995 7899999999999999999999988877655211
Q ss_pred CCCCCCCCCccccCCCCCC-cccccCC--CCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHh
Q 046605 166 HKKVSSDSEPFVMPNLPGE-IKLTRNQ--LPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKAL 242 (487)
Q Consensus 166 ~~~~~~~~~~~~~P~~~~~-~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 242 (487)
... ..+|++|.. +.+...+ ++.+ +.. ....+.+......++..+++|||.+||+.+++++...+
T Consensus 150 --~~~-----~~~pg~p~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 216 (446)
T PLN00414 150 --ELG-----FPPPDYPLSKVALRGHDANVCSL---FAN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQC 216 (446)
T ss_pred --hcC-----CCCCCCCCCcCcCchhhcccchh---hcc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhc
Confidence 000 123555531 1111111 1122 211 11223333345567889999999999999999887765
Q ss_pred CCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEe
Q 046605 243 GRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVV 322 (487)
Q Consensus 243 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~ 322 (487)
+++++.|||+.+.... . .....++++.+|||+++++++|||||||....+.+++.+++.+|+..+.+|+|++
T Consensus 217 ~~~v~~VGPl~~~~~~-~-------~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvv 288 (446)
T PLN00414 217 QRKVLLTGPMLPEPQN-K-------SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAV 288 (446)
T ss_pred CCCeEEEcccCCCccc-c-------cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 6789999999753210 0 0011245789999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhh
Q 046605 323 RKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYN 402 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~ 402 (487)
...... ......+|++|.++.+..++++.+|+||.+||+|+++++||||||+||++||+++|||+|++|++.||+.|
T Consensus 289 r~~~~~---~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~n 365 (446)
T PLN00414 289 MPPKGS---STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLI 365 (446)
T ss_pred ecCCCc---ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHH
Confidence 753211 11122389999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 046605 403 EKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMG--DRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIE 480 (487)
Q Consensus 403 a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 480 (487)
|+++++.+|+|+.+... .++.+++++|+++++++|.+ +..+.+|++|+++++.+. ++||++.. +++||+
T Consensus 366 a~~~~~~~g~g~~~~~~-----~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~ss~-l~~~v~ 436 (446)
T PLN00414 366 TRLLTEELEVSVKVQRE-----DSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLSGY-ADKFVE 436 (446)
T ss_pred HHHHHHHhCeEEEeccc-----cCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcHHH-HHHHHH
Confidence 99997579999999643 11258999999999999963 235679999999999975 67774433 899999
Q ss_pred HHhh
Q 046605 481 DLSL 484 (487)
Q Consensus 481 ~l~~ 484 (487)
.++.
T Consensus 437 ~~~~ 440 (446)
T PLN00414 437 ALEN 440 (446)
T ss_pred HHHH
Confidence 9864
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3e-61 Score=473.99 Aligned_cols=435 Identities=29% Similarity=0.509 Sum_probs=316.0
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEE--EeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRG--VKASV--ITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGW 82 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~ 82 (487)
..||+++|++++||++||+.||+.|+.+| +.||+ ++++.+...+.+..........+++|+.+|++.. .+...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCcc
Confidence 57999999999999999999999999998 45555 4554322222211111001112588998875421 11111
Q ss_pred cccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh----CCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHH
Q 046605 83 ENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQE----HKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIK 158 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 158 (487)
.. .... ...+ ......+...+.+++++ .++++||+|.+..|+..+|+++|||.+.+++++++.+.++.
T Consensus 80 ~~--~~~~---~~~~---~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~ 151 (451)
T PLN03004 80 TS--RHHH---ESLL---LEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSF 151 (451)
T ss_pred cc--ccCH---HHHH---HHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHH
Confidence 11 1100 1112 12222333444444443 24599999999999999999999999999999999998887
Q ss_pred Hhhhhc-CCCCCCCC-CCccccCCCCCCcccccCCCCCCcCCCCCC-chHHHHHHHhhhcccCccEEEEcchhhhcHHHH
Q 046605 159 CLALYE-PHKKVSSD-SEPFVMPNLPGEIKLTRNQLPDPAKQDMGD-NDFSRFMKASDDSDLRSYGVVVNSFYELEHAYA 235 (487)
Q Consensus 159 ~~~~~~-~~~~~~~~-~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~ 235 (487)
++.... ........ ..+..+|+++. +...+++.+ ++.. .....++........++.++++|||++||+.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l 225 (451)
T PLN03004 152 YLPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKA---VLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAI 225 (451)
T ss_pred HHHhccccccccccccCCeecCCCCCC---CChHHCchh---hcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHH
Confidence 754321 11010111 12345788875 566677765 2211 122333444445566778899999999999999
Q ss_pred HHHHHHhC-CceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhc
Q 046605 236 DHYRKALG-RRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEAS 314 (487)
Q Consensus 236 ~~~~~~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~ 314 (487)
+.+...+. ++++.|||++...... . .. . ..+.++.+||+.++++++|||||||...++.+++.+++.+|+.+
T Consensus 226 ~~l~~~~~~~~v~~vGPl~~~~~~~-~----~~-~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s 298 (451)
T PLN03004 226 KAITEELCFRNIYPIGPLIVNGRIE-D----RN-D-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKS 298 (451)
T ss_pred HHHHhcCCCCCEEEEeeeccCcccc-c----cc-c-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHC
Confidence 98876543 5899999997421100 0 00 1 12457999999998899999999999989999999999999999
Q ss_pred CCcEEEEecCCCCCC-CcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEecc
Q 046605 315 GQNFIWVVRKNKNNG-GEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTW 393 (487)
Q Consensus 315 ~~~~i~~~~~~~~~~-~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 393 (487)
+++|||++......+ +.......+|++|+++.+..|+++.+|+||.+||+|+++++||||||+||+.||+++|||+|++
T Consensus 299 ~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~ 378 (451)
T PLN03004 299 GQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAW 378 (451)
T ss_pred CCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEec
Confidence 999999998532100 0001222388999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 046605 394 PVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSS 473 (487)
Q Consensus 394 P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~ 473 (487)
|++.||+.||+++++.+|+|+.++.. .++.+++++|.++|+++|+ +++||++|+++++..++|+++||||.+
T Consensus 379 P~~~DQ~~na~~~~~~~g~g~~l~~~-----~~~~~~~e~l~~av~~vm~---~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 379 PLYAEQRFNRVMIVDEIKIAISMNES-----ETGFVSSTEVEKRVQEIIG---ECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred cccccchhhHHHHHHHhCceEEecCC-----cCCccCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999996457999999753 1125799999999999998 789999999999999999999999874
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.3e-61 Score=477.98 Aligned_cols=441 Identities=28% Similarity=0.444 Sum_probs=325.0
Q ss_pred CCCCceEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCC
Q 046605 3 SGICQLHIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPE 80 (487)
Q Consensus 3 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~ 80 (487)
+++.+.||+++|+|++||++||+.||++|++| ||+|||++++.+.+.+++... ..+++|..+|. ++++
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~-----~~p~ 75 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPN-----VIPS 75 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCC-----CCCC
Confidence 35788999999999999999999999999999 999999999988776665421 12588888863 2232
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh--CCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHH
Q 046605 81 GWENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQE--HKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIK 158 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 158 (487)
+.+...+ . ...+. ...+.+...+.+++++ .++|+||+|.++.|+..+|+++|||++.++++++..+..+.
T Consensus 76 ~~~~~~~--~---~~~~~---~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~ 147 (459)
T PLN02448 76 ELVRAAD--F---PGFLE---AVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFY 147 (459)
T ss_pred ccccccC--H---HHHHH---HHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHH
Confidence 2211111 1 12222 2222344455555554 36799999999999999999999999999999998877776
Q ss_pred HhhhhcCCCCCCCC-----CC-ccccCCCCCCcccccCCCCCCcCCCCCC-chHHHHHHHhhhcccCccEEEEcchhhhc
Q 046605 159 CLALYEPHKKVSSD-----SE-PFVMPNLPGEIKLTRNQLPDPAKQDMGD-NDFSRFMKASDDSDLRSYGVVVNSFYELE 231 (487)
Q Consensus 159 ~~~~~~~~~~~~~~-----~~-~~~~P~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 231 (487)
++.........+.. .. ...+|+++. +...+++.+ +... ...............++..+++|||++||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE 221 (459)
T PLN02448 148 HFDLLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPI---FHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELE 221 (459)
T ss_pred HhhhhhhccCCCCccccccCCccccCCCCCC---CChHHCchh---hcCCchHHHHHHHHHHhhcccCCEEEEccHHHhh
Confidence 65432211111111 01 113666654 455566654 2221 12122222333345567889999999999
Q ss_pred HHHHHHHHHHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHH
Q 046605 232 HAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGL 311 (487)
Q Consensus 232 ~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~ 311 (487)
+.+++++...++.+++.|||+.+....... .. .......+.++.+|++..+++++|||||||....+.+++.+++.+|
T Consensus 222 ~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~-~~-~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l 299 (459)
T PLN02448 222 AQAIDALKSKFPFPVYPIGPSIPYMELKDN-SS-SSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGL 299 (459)
T ss_pred HHHHHHHHhhcCCceEEecCcccccccCCC-cc-ccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHH
Confidence 999999987777789999998653211000 00 0001112358999999988889999999999988899999999999
Q ss_pred HhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEe
Q 046605 312 EASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLV 391 (487)
Q Consensus 312 ~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l 391 (487)
+.++++|||++..... ++.+.. ..|+++.+|+||.+||+|+++++||||||+||+.||+++|||||
T Consensus 300 ~~~~~~~lw~~~~~~~-------------~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l 365 (459)
T PLN02448 300 RDSGVRFLWVARGEAS-------------RLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPML 365 (459)
T ss_pred HhCCCCEEEEEcCchh-------------hHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEE
Confidence 9999999998764321 121111 35788899999999999999999999999999999999999999
Q ss_pred ccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHhcCC
Q 046605 392 TWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMG--DRAEEMRSRAKAFGEMAKRAVENGG 469 (487)
Q Consensus 392 ~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~a~~l~~~~~~a~~~~g 469 (487)
++|++.||+.||+++++.+|+|+.+.... +..+.+++++|+++|+++|.+ +.+++||+||++|++++++|+++||
T Consensus 366 ~~P~~~DQ~~na~~v~~~~g~G~~~~~~~---~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gG 442 (459)
T PLN02448 366 TFPLFWDQPLNSKLIVEDWKIGWRVKREV---GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGG 442 (459)
T ss_pred eccccccchhhHHHHHHHhCceEEEeccc---ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999964479999986320 011257999999999999972 3467899999999999999999999
Q ss_pred CcHHHHHHHHHHHhhcc
Q 046605 470 SSSSNLNSLIEDLSLRR 486 (487)
Q Consensus 470 ~~~~~~~~~~~~l~~~~ 486 (487)
||..++++||+.+++-|
T Consensus 443 ss~~~l~~~v~~~~~~~ 459 (459)
T PLN02448 443 SSDTNLDAFIRDISQGR 459 (459)
T ss_pred cHHHHHHHHHHHHhccC
Confidence 99999999999998643
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.4e-60 Score=469.82 Aligned_cols=442 Identities=24% Similarity=0.414 Sum_probs=316.6
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTT-RGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
++.||+++|++++||++|++.||+.|+. +|+.|||++++.+.. +..... .....+++|+.++ ++++++.+.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~-~~~~~~i~~~~i~-----dglp~g~~~ 73 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPN-HNNVENLSFLTFS-----DGFDDGVIS 73 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhcc-CCCCCCEEEEEcC-----CCCCCcccc
Confidence 4679999999999999999999999996 699999999985311 111110 0111258888875 255544321
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh-----CCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHH
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQE-----HKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKC 159 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 159 (487)
... .....+......+.+.+.+++++ .++++||+|.+..|+..+|+.+|||.+.+++++++.+..+.+
T Consensus 74 ~~~-------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~ 146 (455)
T PLN02152 74 NTD-------DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYN 146 (455)
T ss_pred ccc-------cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 111 11112222333334445555443 235999999999999999999999999999999998888766
Q ss_pred hhhhcCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhccc--CccEEEEcchhhhcHHHHHH
Q 046605 160 LALYEPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDL--RSYGVVVNSFYELEHAYADH 237 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~~~~~~ 237 (487)
+.... .....+|+++. +..++++.+...-.....+...+.+...... .+.++++|||++||+.+++.
T Consensus 147 ~~~~~--------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 215 (455)
T PLN02152 147 YSTGN--------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTA 215 (455)
T ss_pred hhccC--------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHh
Confidence 54210 12345788875 5667777762110011122233333333322 24689999999999999988
Q ss_pred HHHHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCc
Q 046605 238 YRKALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQN 317 (487)
Q Consensus 238 ~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~ 317 (487)
+.. .+++.|||+.+...............+..+.++.+||+.++++++|||||||....+.+++.+++.+|+.++++
T Consensus 216 l~~---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~ 292 (455)
T PLN02152 216 IPN---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRP 292 (455)
T ss_pred hhc---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 854 36999999975311000000000000123457999999998889999999999999999999999999999999
Q ss_pred EEEEecCCCCCCC---cccccc-cCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEecc
Q 046605 318 FIWVVRKNKNNGG---EEEKED-WLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTW 393 (487)
Q Consensus 318 ~i~~~~~~~~~~~---~~~~~~-~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 393 (487)
|||++......++ .+.... .+|++|.++. .+|.++.+|+||.+||+|+++++||||||+||+.||+++|||+|++
T Consensus 293 flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~ 371 (455)
T PLN02152 293 FLWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAF 371 (455)
T ss_pred eEEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEec
Confidence 9999985321000 000000 1466776654 3567888999999999999999999999999999999999999999
Q ss_pred CccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 046605 394 PVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSS 473 (487)
Q Consensus 394 P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~ 473 (487)
|++.||+.||+++++.+|+|+.+..+ .++.++.|+|.++|+++|+ +.+.+||+||++|++..++|+.+||||+.
T Consensus 372 P~~~DQ~~na~~~~~~~~~G~~~~~~-----~~~~~~~e~l~~av~~vm~-~~~~~~r~~a~~~~~~~~~a~~~ggsS~~ 445 (455)
T PLN02152 372 PMWSDQPANAKLLEEIWKTGVRVREN-----SEGLVERGEIRRCLEAVME-EKSVELRESAEKWKRLAIEAGGEGGSSDK 445 (455)
T ss_pred cccccchHHHHHHHHHhCceEEeecC-----cCCcCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 99999999999997446788777532 1125799999999999997 33457999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 046605 474 NLNSLIEDLS 483 (487)
Q Consensus 474 ~~~~~~~~l~ 483 (487)
++++||+.+.
T Consensus 446 nl~~li~~i~ 455 (455)
T PLN02152 446 NVEAFVKTLC 455 (455)
T ss_pred HHHHHHHHhC
Confidence 9999999863
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5e-60 Score=474.28 Aligned_cols=449 Identities=28% Similarity=0.470 Sum_probs=323.5
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCCccchh---hhhhhhhc-cCcceeEEEeeCCCccCCCCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRG--VKASVITTPGNAPHLS---RSIQKASE-LGIELDVKIIKFPSAEAGLPE 80 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~---~~~~~~~~-~g~~i~~~~i~~~~~~~~~~~ 80 (487)
++||+++|+|++||++||+.||+.|+.+| ..|||++++.+...+. ........ ...+++|+.+|++.. .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-----~ 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ-----P 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC-----C
Confidence 58999999999999999999999999998 8899999987654221 11110000 122588998875421 1
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh-----CCC-CEEEeCCCCcchHHHHHHhCCCeEEEechhHHHH
Q 046605 81 GWENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQE-----HKP-DCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSL 154 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~p-DlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 154 (487)
. .. . ......+......+.+.+.+++.+ .+| ++||+|.++.|+..+|+.+|||++.+++++++.+
T Consensus 77 ~-~~-----~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~ 147 (481)
T PLN02554 77 T-TE-----D---PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFL 147 (481)
T ss_pred c-cc-----c---hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHH
Confidence 1 00 0 011111122223334445555432 133 8999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCC-----CCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhh
Q 046605 155 CAIKCLALYEPH-----KKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYE 229 (487)
Q Consensus 155 ~~~~~~~~~~~~-----~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 229 (487)
.++.++...... ...+....+..+|+++.. +...+++.. +... .+...+.+......+++++++||+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~---~~~~-~~~~~~~~~~~~~~~~~gvlvNt~~e 221 (481)
T PLN02554 148 GLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSV---LLSK-EWLPLFLAQARRFREMKGILVNTVAE 221 (481)
T ss_pred HHHHhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCc---ccCH-HHHHHHHHHHHhcccCCEEEEechHH
Confidence 888776432111 011111123457887422 455566654 2222 22233334445567788999999999
Q ss_pred hcHHHHHHHHHH--hCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHH
Q 046605 230 LEHAYADHYRKA--LGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEI 307 (487)
Q Consensus 230 l~~~~~~~~~~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~ 307 (487)
||+.+...+... ..++++.|||++....... . .....+.++.+|++.++++++|||||||+...+.+++.++
T Consensus 222 Le~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~-----~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~l 295 (481)
T PLN02554 222 LEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD-----D-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREI 295 (481)
T ss_pred HhHHHHHHHHhcccCCCCEEEeCCCcccccccc-----c-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH
Confidence 999888877653 3368999999943211100 0 0012457899999999888999999999988899999999
Q ss_pred HHHHHhcCCcEEEEecCCCCC------CCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHH
Q 046605 308 AMGLEASGQNFIWVVRKNKNN------GGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSIL 381 (487)
Q Consensus 308 ~~a~~~~~~~~i~~~~~~~~~------~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~ 381 (487)
+.+|+.++++|||+++..... .+..+....+|+++.++.+ +|+++++|+||.+||+|+++++||||||+||++
T Consensus 296 a~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~ 374 (481)
T PLN02554 296 AIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK-DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSIL 374 (481)
T ss_pred HHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhc-cCceEEeeCCHHHHhCCcccCcccccCccchHH
Confidence 999999999999999753110 0000111226888876654 567888999999999999999999999999999
Q ss_pred HHhhcCCcEeccCccccchhhHHHHHHHhhceEeeccccccc---ccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 046605 382 EGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCR---IVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFG 458 (487)
Q Consensus 382 eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~---~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 458 (487)
||+++|||||++|+++||+.||+++++++|+|+.+....+.. ..++.+++++|.++|+++|++ +++||+||++++
T Consensus 375 Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~--~~~~r~~a~~l~ 452 (481)
T PLN02554 375 ESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQ--DSDVRKRVKEMS 452 (481)
T ss_pred HHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 999999999999999999999955337999999996310000 011368999999999999952 479999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhh
Q 046605 459 EMAKRAVENGGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 459 ~~~~~a~~~~g~~~~~~~~~~~~l~~ 484 (487)
+++++|+++||||..++++||+.++.
T Consensus 453 ~~~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 453 EKCHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.7e-59 Score=469.76 Aligned_cols=458 Identities=27% Similarity=0.447 Sum_probs=319.8
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCC---eEEEEeCCCCcc-chhhhhhhhhccCcceeEEEeeCCCccCCCCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGV---KASVITTPGNAP-HLSRSIQKASELGIELDVKIIKFPSAEAGLPE 80 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~~~~~-~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~ 80 (487)
+++.||+|+|+|++||++||+.||+.|+.+|. .||++++..... ..............+|+|+.+|++.. +.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~ 76 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PP 76 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Cc
Confidence 46789999999999999999999999999984 567776543321 11111111111112589999885431 11
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhh-----C-CCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHH
Q 046605 81 GWENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQE-----H-KPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSL 154 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~-~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 154 (487)
+.+....... ..+..........+.+.+.+++.+ . ++++||+|.++.|+..+|+.+|||.+.+++++++.+
T Consensus 77 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~ 153 (475)
T PLN02167 77 PMELFVKASE---AYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFL 153 (475)
T ss_pred cccccccchH---HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHH
Confidence 1110010111 011111112222333344444432 1 359999999999999999999999999999999888
Q ss_pred HHHHHhhhhc-CCC-CC--CCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhh
Q 046605 155 CAIKCLALYE-PHK-KV--SSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYEL 230 (487)
Q Consensus 155 ~~~~~~~~~~-~~~-~~--~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 230 (487)
.++.+..... ... .. .....+..+|+++.. +...+++.+ ++....+. .+.........++++++|||++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~---~~~~~~~~-~~~~~~~~~~~a~~vlvNTf~eL 227 (475)
T PLN02167 154 GMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPG---LFMKESYE-AWVEIAERFPEAKGILVNSFTEL 227 (475)
T ss_pred HHHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchh---hhCcchHH-HHHHHHHhhcccCEeeeccHHHH
Confidence 8877654211 111 00 011133457888532 445556643 21111122 22233344567889999999999
Q ss_pred cHHHHHHHHHHh--CCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHH
Q 046605 231 EHAYADHYRKAL--GRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIA 308 (487)
Q Consensus 231 ~~~~~~~~~~~~--~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~ 308 (487)
|+.+++++.... .++++.|||+........ ...+...+.++.+||+.++++++|||||||+...+.+++.+++
T Consensus 228 E~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~-----~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela 302 (475)
T PLN02167 228 EPNAFDYFSRLPENYPPVYPVGPILSLKDRTS-----PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIA 302 (475)
T ss_pred HHHHHHHHHhhcccCCeeEEeccccccccccC-----CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHH
Confidence 999998886541 268999999976321100 0001113468999999998889999999999888999999999
Q ss_pred HHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCC
Q 046605 309 MGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGV 388 (487)
Q Consensus 309 ~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~Gv 388 (487)
.+|+.++++|||+++...... .+.. ..+|+++.++.+.. .++++|+||.+||+|+++++||||||+||++||+++||
T Consensus 303 ~~l~~~~~~flw~~~~~~~~~-~~~~-~~lp~~~~er~~~r-g~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~Gv 379 (475)
T PLN02167 303 QALELVGCRFLWSIRTNPAEY-ASPY-EPLPEGFMDRVMGR-GLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGV 379 (475)
T ss_pred HHHHhCCCcEEEEEecCcccc-cchh-hhCChHHHHHhccC-eeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCC
Confidence 999999999999998532100 0011 12788887766544 46779999999999999999999999999999999999
Q ss_pred cEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcC
Q 046605 389 PLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENG 468 (487)
Q Consensus 389 P~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~ 468 (487)
|||++|+++||+.||+++++.+|+|+.+....+ .+.++.+++++|.++|+++|.++ +.||+||+++++.+++|+++|
T Consensus 380 P~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~-~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~g 456 (475)
T PLN02167 380 PIATWPMYAEQQLNAFTMVKELGLAVELRLDYV-SAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDG 456 (475)
T ss_pred CEEeccccccchhhHHHHHHHhCeeEEeecccc-cccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999874379999999864200 01112579999999999999732 389999999999999999999
Q ss_pred CCcHHHHHHHHHHHhhcc
Q 046605 469 GSSSSNLNSLIEDLSLRR 486 (487)
Q Consensus 469 g~~~~~~~~~~~~l~~~~ 486 (487)
|||..++++||+.+++-+
T Consensus 457 GsS~~~l~~~v~~i~~~~ 474 (475)
T PLN02167 457 GSSFVAVKRFIDDLLGDH 474 (475)
T ss_pred CcHHHHHHHHHHHHHhcC
Confidence 999999999999998754
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.3e-50 Score=405.47 Aligned_cols=413 Identities=17% Similarity=0.207 Sum_probs=280.7
Q ss_pred CceEEEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCcc--CCCCCCC
Q 046605 6 CQLHIFFF-PFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAE--AGLPEGW 82 (487)
Q Consensus 6 ~~~~Il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~--~~~~~~~ 82 (487)
...||+++ |.++.||+.-+.+|+++|++|||+||++++..... .... ...+++...+++.... +.+.. .
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~~~~~-~ 90 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEYFKKLVKS-S 90 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHHHHHHHhh-h
Confidence 45678866 88999999999999999999999999998854211 1100 0124444444321110 00000 0
Q ss_pred ccc---ccchhhh--hHHHHHHHHHHHHhh--hHHHHHHHh--hCCCCEEEeCCCCcchHHHHHHh-CCCeEEEechhHH
Q 046605 83 ENL---DAITNEV--NRELIVKFYMATTKL--QKPLEQLLQ--EHKPDCLVADMFFPWATDAAAKF-GIPRLVFHGTSFF 152 (487)
Q Consensus 83 ~~~---~~~~~~~--~~~~~~~~~~~~~~~--~~~l~~~l~--~~~pDlVI~D~~~~~~~~~A~~~-giP~v~~~~~~~~ 152 (487)
... ......+ ....+..+...|+.+ .+++.++|+ +.++|+||+|.+..|+..+|+.+ ++|.|.++++...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 91 AVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 000 0000000 001112223333322 567788887 68899999998888999999999 9999998886544
Q ss_pred HHHHHHHhhhhcCCCCCC-CCCCccccCCCCC----CcccccCCCCCCcCCCCCC-------chHHHHHHHhh-------
Q 046605 153 SLCAIKCLALYEPHKKVS-SDSEPFVMPNLPG----EIKLTRNQLPDPAKQDMGD-------NDFSRFMKASD------- 213 (487)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~~----~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~------- 213 (487)
..... ..+ .+..++++|.+.. +|++..| +.+++...... ....++.+...
T Consensus 171 ~~~~~----------~~gg~p~~~syvP~~~~~~~~~Msf~~R-~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 239 (507)
T PHA03392 171 AENFE----------TMGAVSRHPVYYPNLWRSKFGNLNVWET-INEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTI 239 (507)
T ss_pred hhHHH----------hhccCCCCCeeeCCcccCCCCCCCHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCH
Confidence 32111 112 4455666674332 3322222 11110000000 01111222221
Q ss_pred -hcccCccEEEEcchhhhcHHHHHHHHHHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEe
Q 046605 214 -DSDLRSYGVVVNSFYELEHAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYIC 292 (487)
Q Consensus 214 -~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs 292 (487)
....+...+++|+...++. ++++++++++|||+..+... ..++++++.+|++.+ ++++||||
T Consensus 240 ~~l~~~~~l~lvns~~~~d~------~rp~~p~v~~vGgi~~~~~~----------~~~l~~~l~~fl~~~-~~g~V~vS 302 (507)
T PHA03392 240 RELRNRVQLLFVNVHPVFDN------NRPVPPSVQYLGGLHLHKKP----------PQPLDDYLEEFLNNS-TNGVVYVS 302 (507)
T ss_pred HHHHhCCcEEEEecCccccC------CCCCCCCeeeecccccCCCC----------CCCCCHHHHHHHhcC-CCcEEEEE
Confidence 1112335567888776663 36788999999998764211 123578999999887 45799999
Q ss_pred ccCccc---CCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCcc
Q 046605 293 FGSVAN---FTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVG 369 (487)
Q Consensus 293 ~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~ 369 (487)
|||+.. .+.+.+..+++|+++++++|||++++.... .. + ++|+++.+|+||.+||+|++++
T Consensus 303 ~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~------~~-~---------p~Nv~i~~w~Pq~~lL~hp~v~ 366 (507)
T PHA03392 303 FGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA------IN-L---------PANVLTQKWFPQRAVLKHKNVK 366 (507)
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc------cc-C---------CCceEEecCCCHHHHhcCCCCC
Confidence 999864 578899999999999999999999864420 00 2 5799999999999999999999
Q ss_pred ccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHH
Q 046605 370 GFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEE 449 (487)
Q Consensus 370 ~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 449 (487)
+||||||.||++||+++|||+|++|+++||+.||+|+ +++|+|+.++.. +++.++|.++|+++|+ |++
T Consensus 367 ~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~--------~~t~~~l~~ai~~vl~---~~~ 434 (507)
T PHA03392 367 AFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV--------TVSAAQLVLAIVDVIE---NPK 434 (507)
T ss_pred EEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC--------CcCHHHHHHHHHHHhC---CHH
Confidence 9999999999999999999999999999999999999 599999999987 8999999999999999 899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhc
Q 046605 450 MRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLSLR 485 (487)
Q Consensus 450 ~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~~~ 485 (487)
||+||+++++.+++ ..-+..+.+..-+|...++
T Consensus 435 y~~~a~~ls~~~~~---~p~~~~~~av~~iE~v~r~ 467 (507)
T PHA03392 435 YRKNLKELRHLIRH---QPMTPLHKAIWYTEHVIRN 467 (507)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhC
Confidence 99999999999994 3333334455666666544
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=5.1e-51 Score=418.00 Aligned_cols=384 Identities=23% Similarity=0.338 Sum_probs=226.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccc-c
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLD-A 87 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~-~ 87 (487)
||+++|. +.||+.++.+|+++|++|||+||++++..... +... ...++++..++.+.....+........ .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-cccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888885 78999999999999999999999999853211 1100 012566666654322211221111100 0
Q ss_pred chhh-----hhHHHHHHHH-------HHHHhh--hHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHH
Q 046605 88 ITNE-----VNRELIVKFY-------MATTKL--QKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFS 153 (487)
Q Consensus 88 ~~~~-----~~~~~~~~~~-------~~~~~~--~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 153 (487)
.... .....+.... ..|+.+ .+.+.+.+++.++|++|+|.+..|+..+|+.+++|.+.+.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 0000 0001111111 111111 2334455666789999999998899999999999998654321110
Q ss_pred HHHHHHhhhhcCCCCC-CCCCCccccCCCCC----CcccccCCCCCCcCCCCCCchHHHH-HHHhhhcccCcc-------
Q 046605 154 LCAIKCLALYEPHKKV-SSDSEPFVMPNLPG----EIKLTRNQLPDPAKQDMGDNDFSRF-MKASDDSDLRSY------- 220 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------- 220 (487)
...... +.+..++++|.... .|++..| +.++ +. ..+..+ ............
T Consensus 154 ----------~~~~~~~g~p~~psyvP~~~s~~~~~msf~~R-i~N~---l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 154 ----------DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQR-IKNF---LF--YLYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp ----------CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST---TTS---HH--HHHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred ----------hhhhhccCCCCChHHhccccccCCCccchhhh-hhhh---hh--hhhhccccccchhhHHHHHhhhcccc
Confidence 011111 33445555664332 2222111 1111 00 001111 111111101111
Q ss_pred -----------EEEEcchhhhcHHHHHHHHHHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEE
Q 046605 221 -----------GVVVNSFYELEHAYADHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVV 289 (487)
Q Consensus 221 -----------~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 289 (487)
.+++|+. +.++++ .++.+++.+||++....++ +++.++..|++...++++|
T Consensus 218 ~~~~~~~~~~~l~l~ns~-----~~ld~p-rp~~p~v~~vGgl~~~~~~------------~l~~~~~~~~~~~~~~~vv 279 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSH-----PSLDFP-RPLLPNVVEVGGLHIKPAK------------PLPEELWNFLDSSGKKGVV 279 (500)
T ss_dssp GGCHHHHHHHHHCCSSTE-----EE-----HHHHCTSTTGCGC-S----------------TCHHHHHHHTSTTTTTEEE
T ss_pred cccHHHHHHHHHHhhhcc-----ccCcCC-cchhhcccccCcccccccc------------ccccccchhhhccCCCCEE
Confidence 0112222 223444 4456889999998665332 2678999999985578899
Q ss_pred EEeccCcccC-CHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCc
Q 046605 290 YICFGSVANF-TSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAV 368 (487)
Q Consensus 290 ~vs~Gs~~~~-~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~ 368 (487)
||||||.... +.+.+..++++|++++++|||++.+... +.+ ++|+++++|+||.+||.|+++
T Consensus 280 ~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~------------~~l-----~~n~~~~~W~PQ~~lL~hp~v 342 (500)
T PF00201_consen 280 YVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP------------ENL-----PKNVLIVKWLPQNDLLAHPRV 342 (500)
T ss_dssp EEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG------------CHH-----HTTEEEESS--HHHHHTSTTE
T ss_pred EEecCcccchhHHHHHHHHHHHHhhCCCccccccccccc------------ccc-----cceEEEeccccchhhhhcccc
Confidence 9999999864 4455889999999999999999988432 121 378999999999999999999
Q ss_pred cccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHH
Q 046605 369 GGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAE 448 (487)
Q Consensus 369 ~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 448 (487)
++||||||+||++||+++|||+|++|+++||+.||+++ ++.|+|+.++.. ++|.++|.++|+++|+ |+
T Consensus 343 ~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~--------~~~~~~l~~ai~~vl~---~~ 410 (500)
T PF00201_consen 343 KLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN--------DLTEEELRAAIREVLE---NP 410 (500)
T ss_dssp EEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG--------C-SHHHHHHHHHHHHH---SH
T ss_pred eeeeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec--------CCcHHHHHHHHHHHHh---hh
Confidence 99999999999999999999999999999999999999 599999999987 8999999999999999 88
Q ss_pred HHHHHHHHHHHHHHH
Q 046605 449 EMRSRAKAFGEMAKR 463 (487)
Q Consensus 449 ~~~~~a~~l~~~~~~ 463 (487)
+|++||+++++.+++
T Consensus 411 ~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 411 SYKENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999985
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=7.5e-45 Score=360.88 Aligned_cols=386 Identities=18% Similarity=0.213 Sum_probs=260.4
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccchhhh
Q 046605 13 FPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAITNEV 92 (487)
Q Consensus 13 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 92 (487)
+.+|+.||++|++.||++|++|||+|+|++++.+.+.+++. ++.|..++.........+. ......
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~---~~~~~~-- 66 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPE---NTEEEP-- 66 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcccccccc---ccCcch--
Confidence 36899999999999999999999999999999999888877 6777777632211001110 000111
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhcCCCCCCCC
Q 046605 93 NRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPHKKVSSD 172 (487)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (487)
......+......+...+.+.+++++||+||+|.+++++..+|+.+|||+|.+++...... ..+.
T Consensus 67 -~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~-------------~~~~- 131 (392)
T TIGR01426 67 -IDIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE-------------EFEE- 131 (392)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc-------------cccc-
Confidence 2333333334444455677777889999999999888999999999999998865321110 0000
Q ss_pred CCccccCCCCCCcccccCCCCCCcCCCCC-CchHHHHHHHhhhcccCccEEE-Ecc--hhhhcHHHHHHHHHHhCCceEE
Q 046605 173 SEPFVMPNLPGEIKLTRNQLPDPAKQDMG-DNDFSRFMKASDDSDLRSYGVV-VNS--FYELEHAYADHYRKALGRRAWH 248 (487)
Q Consensus 173 ~~~~~~P~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~s--~~~l~~~~~~~~~~~~~~~~~~ 248 (487)
..|.+...+ +........ .... ...+..++.+............ ... .....++++.+....+++++++
T Consensus 132 ----~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 204 (392)
T TIGR01426 132 ----MVSPAGEGS-AEEGAIAER--GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTF 204 (392)
T ss_pred ----cccccchhh-hhhhccccc--hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEE
Confidence 000000000 000000000 0000 0011112221110000000000 000 0011234444445667889999
Q ss_pred eccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCC
Q 046605 249 IGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNN 328 (487)
Q Consensus 249 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~ 328 (487)
+||+..... +...|....+++++|||||||+.....+.+..+++++.+.++++||.++.....
T Consensus 205 ~Gp~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~ 267 (392)
T TIGR01426 205 VGPCIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP 267 (392)
T ss_pred ECCCCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh
Confidence 999765321 122366666678899999999877667788899999999999999998765421
Q ss_pred CCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHH
Q 046605 329 GGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNE 408 (487)
Q Consensus 329 ~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~ 408 (487)
+.+.. + ++|+.+.+|+||.++|+++++ +|||||.||+.||+++|+|+|++|...||+.||.++ +
T Consensus 268 ---~~~~~-~---------~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~ 331 (392)
T TIGR01426 268 ---ADLGE-L---------PPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-A 331 (392)
T ss_pred ---hHhcc-C---------CCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-H
Confidence 11111 1 478999999999999999887 999999999999999999999999999999999999 5
Q ss_pred HhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 046605 409 VLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLS 483 (487)
Q Consensus 409 ~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~ 483 (487)
++|+|+.+... .+++++|.++|+++|+ +++|+++++++++.++ +.+|. .++.++|+.+.
T Consensus 332 ~~g~g~~l~~~--------~~~~~~l~~ai~~~l~---~~~~~~~~~~l~~~~~---~~~~~--~~aa~~i~~~~ 390 (392)
T TIGR01426 332 ELGLGRHLPPE--------EVTAEKLREAVLAVLS---DPRYAERLRKMRAEIR---EAGGA--RRAADEIEGFL 390 (392)
T ss_pred HCCCEEEeccc--------cCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH---HcCCH--HHHHHHHHHhh
Confidence 99999999876 7999999999999998 8899999999999999 45655 55677777763
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.6e-43 Score=350.53 Aligned_cols=387 Identities=17% Similarity=0.125 Sum_probs=254.4
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc---
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN--- 84 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~--- 84 (487)
|||+|+++|+.||++|+++||++|++|||+|+|++++.++..++.. +++|..++..............
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 6899999999999999999999999999999999999888877765 6777777532111000000000
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhc
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYE 164 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (487)
...... .......+......+...+.+.++.++||+||+|.+.+++..+|+.+|||+|.+++++.....
T Consensus 72 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~--------- 140 (401)
T cd03784 72 LLGPGL--LLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS--------- 140 (401)
T ss_pred ccchHH--HHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc---------
Confidence 000000 012333344455556666777777899999999998888999999999999999876432210
Q ss_pred CCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccC---------ccEEEEcchhhhcHHHH
Q 046605 165 PHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLR---------SYGVVVNSFYELEHAYA 235 (487)
Q Consensus 165 ~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~l~~~~~ 235 (487)
...|-+ ... ................+..........+.- ....+... .+.+
T Consensus 141 -----------~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~~~ 200 (401)
T cd03784 141 -----------AFPPPL-GRA---NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SPAV 200 (401)
T ss_pred -----------cCCCcc-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----Cccc
Confidence 000000 000 000000000000000001111111111100 00011100 1122
Q ss_pred HHHHHHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccC-CHHHHHHHHHHHHhc
Q 046605 236 DHYRKALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANF-TSAQLMEIAMGLEAS 314 (487)
Q Consensus 236 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~ 314 (487)
.....+++++..++|......+. ....+.++..|++.. +++|||||||+... ....+..+++++...
T Consensus 201 ~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~ 268 (401)
T cd03784 201 LPPPPDWPRFDLVTGYGFRDVPY----------NGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATL 268 (401)
T ss_pred CCCCCCccccCcEeCCCCCCCCC----------CCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHc
Confidence 22334556667777532221110 112356778888753 66999999999874 456778889999999
Q ss_pred CCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccC
Q 046605 315 GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWP 394 (487)
Q Consensus 315 ~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P 394 (487)
+.++||+++..... . ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|
T Consensus 269 ~~~~i~~~g~~~~~----~-----------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P 331 (401)
T cd03784 269 GQRAILSLGWGGLG----A-----------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVP 331 (401)
T ss_pred CCeEEEEccCcccc----c-----------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeC
Confidence 99999999876531 0 002478999999999999999887 999999999999999999999999
Q ss_pred ccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 046605 395 VYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSN 474 (487)
Q Consensus 395 ~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~ 474 (487)
+..||+.||+++ +++|+|+.+... +++.++|.++|+++++ ++ +++++.++++.++ +++|. ..
T Consensus 332 ~~~dQ~~~a~~~-~~~G~g~~l~~~--------~~~~~~l~~al~~~l~---~~-~~~~~~~~~~~~~---~~~g~--~~ 393 (401)
T cd03784 332 FFGDQPFWAARV-AELGAGPALDPR--------ELTAERLAAALRRLLD---PP-SRRRAAALLRRIR---EEDGV--PS 393 (401)
T ss_pred CCCCcHHHHHHH-HHCCCCCCCCcc--------cCCHHHHHHHHHHHhC---HH-HHHHHHHHHHHHH---hccCH--HH
Confidence 999999999999 699999999876 7899999999999997 54 5666777777776 45555 55
Q ss_pred HHHHHHH
Q 046605 475 LNSLIED 481 (487)
Q Consensus 475 ~~~~~~~ 481 (487)
+.++|+.
T Consensus 394 ~~~~ie~ 400 (401)
T cd03784 394 AADVIER 400 (401)
T ss_pred HHHHHhh
Confidence 6777765
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-43 Score=345.44 Aligned_cols=391 Identities=23% Similarity=0.286 Sum_probs=256.0
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLD 86 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (487)
+|||+|+..|+.||++|+++||++|.++||+|+|+|++.+++.+++. ++.|..++....+ .....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~------~~~~~ 65 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSE------LATED 65 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCCh------hhhhh
Confidence 58999999999999999999999999999999999999999999988 5666666532110 00000
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhcCC
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPH 166 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
..... ...+............++.+.+.+..||+|+.|.....+ .+++..++|++.............
T Consensus 66 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------- 133 (406)
T COG1819 66 GKFAG--VKSFRRLLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAA--------- 133 (406)
T ss_pred hhhhc--cchhHHHhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccc---------
Confidence 00000 011111233334445677788888999999999766555 789999999987755433322100
Q ss_pred CCCCCCCCccccC--CCCCCcccccCCCCCC-cCCCCCC-chHHHHHHHhhhcccCcc---EEEEcchhhhcHHHHHHHH
Q 046605 167 KKVSSDSEPFVMP--NLPGEIKLTRNQLPDP-AKQDMGD-NDFSRFMKASDDSDLRSY---GVVVNSFYELEHAYADHYR 239 (487)
Q Consensus 167 ~~~~~~~~~~~~P--~~~~~~~~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~s~~~l~~~~~~~~~ 239 (487)
....| .....+......++.. ..+.... ........+....+.... .-+..+-..++..+.+...
T Consensus 134 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (406)
T COG1819 134 --------GLPLPPVGIAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLF 205 (406)
T ss_pred --------ccCcccccccccccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCcccccccccc
Confidence 00000 0000111111111100 0000000 000011111000000000 0000000001111110000
Q ss_pred ---HHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCC
Q 046605 240 ---KALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQ 316 (487)
Q Consensus 240 ---~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~ 316 (487)
..++....++||+... ...++..| ...++++||+||||.... .+++..++++|..++.
T Consensus 206 ~~~~~~p~~~~~~~~~~~~----------------~~~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~ 266 (406)
T COG1819 206 PPGDRLPFIGPYIGPLLGE----------------AANELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDV 266 (406)
T ss_pred CCCCCCCCCcCcccccccc----------------ccccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCc
Confidence 1233444555655333 12334444 223577999999999977 8889999999999999
Q ss_pred cEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCcc
Q 046605 317 NFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVY 396 (487)
Q Consensus 317 ~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~ 396 (487)
++|..+++.. +...+ + ++|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|..
T Consensus 267 ~vi~~~~~~~-----~~~~~-~---------p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~ 329 (406)
T COG1819 267 RVIVSLGGAR-----DTLVN-V---------PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDG 329 (406)
T ss_pred EEEEeccccc-----ccccc-C---------CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCC
Confidence 9999998721 11111 3 579999999999999999998 99999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 046605 397 AEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLN 476 (487)
Q Consensus 397 ~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~ 476 (487)
.||+.||.|+ ++.|+|+.+..+ .++.+.|+++|+++|+ +++|+++++++++.++ +++|. ..++
T Consensus 330 ~DQ~~nA~rv-e~~G~G~~l~~~--------~l~~~~l~~av~~vL~---~~~~~~~~~~~~~~~~---~~~g~--~~~a 392 (406)
T COG1819 330 ADQPLNAERV-EELGAGIALPFE--------ELTEERLRAAVNEVLA---DDSYRRAAERLAEEFK---EEDGP--AKAA 392 (406)
T ss_pred cchhHHHHHH-HHcCCceecCcc--------cCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHhh---hcccH--HHHH
Confidence 9999999999 799999999987 8999999999999999 8899999999999999 56774 6688
Q ss_pred HHHHHHhhc
Q 046605 477 SLIEDLSLR 485 (487)
Q Consensus 477 ~~~~~l~~~ 485 (487)
++|+.+.+.
T Consensus 393 ~~le~~~~~ 401 (406)
T COG1819 393 DLLEEFARE 401 (406)
T ss_pred HHHHHHHhc
Confidence 999886543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2e-40 Score=339.84 Aligned_cols=401 Identities=30% Similarity=0.451 Sum_probs=244.9
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeE---EEeeCCCccCCCCCCCc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDV---KIIKFPSAEAGLPEGWE 83 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~---~~i~~~~~~~~~~~~~~ 83 (487)
..+++++++|+.||++|+..+|+.|+++||+||++++.......... .. ...+.. ...++....++++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SK----SKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-cc----ceeeeeeecChHHhhhhhhhhccchH
Confidence 57888999999999999999999999999999999997654433221 00 001111 11111111111211111
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhHH-HHHHHh--hCCCCEEEeCCCCcchHHHHHHhC-CCeEEEechhHHHHHHHHH
Q 046605 84 NLDAITNEVNRELIVKFYMATTKLQKP-LEQLLQ--EHKPDCLVADMFFPWATDAAAKFG-IPRLVFHGTSFFSLCAIKC 159 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~--~~~pDlVI~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~ 159 (487)
... ... ......+...+...... ...... ..++|++|+|.+..+...+|.... ++...+.+.++........
T Consensus 80 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 155 (496)
T KOG1192|consen 80 DDD-LDI---SESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP 155 (496)
T ss_pred HHH-HHH---HHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc
Confidence 100 000 01122222333222222 222222 234999999998666776776665 8888877776665533211
Q ss_pred hhhhcCCCCCCCCCCccccCCCCCC-----cccccC-------CCCCCcCCCCCCchHHHHHHHhhhcc----cCccEEE
Q 046605 160 LALYEPHKKVSSDSEPFVMPNLPGE-----IKLTRN-------QLPDPAKQDMGDNDFSRFMKASDDSD----LRSYGVV 223 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~P~~~~~-----~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 223 (487)
....++|..... +.+..+ .++....................... .....++
T Consensus 156 -------------~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 222 (496)
T KOG1192|consen 156 -------------SPLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGII 222 (496)
T ss_pred -------------CcccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhh
Confidence 111122221110 000000 00000000000000001111111111 1111333
Q ss_pred Ecc-hhhhcHHHHHHH-HHHhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCC--CcEEEEeccCcc--
Q 046605 224 VNS-FYELEHAYADHY-RKALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQP--NSVVYICFGSVA-- 297 (487)
Q Consensus 224 ~~s-~~~l~~~~~~~~-~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~v~vs~Gs~~-- 297 (487)
.++ +..+++...... ..+..+++++|||+....... + .....+|++..+. +++|||||||+.
T Consensus 223 ~~~~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~----------~--~~~~~~wl~~~~~~~~~vvyvSfGS~~~~ 290 (496)
T KOG1192|consen 223 VNASFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ----------K--SPLPLEWLDILDESRHSVVYISFGSMVNS 290 (496)
T ss_pred hcCeEEEEccCcccCCCCCCCCCCceEECcEEecCccc----------c--ccccHHHHHHHhhccCCeEEEECCccccc
Confidence 344 555554444334 344568999999998762221 0 1133445544433 379999999999
Q ss_pred -cCCHHHHHHHHHHHHhc-CCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhh-hcccCccccccc
Q 046605 298 -NFTSAQLMEIAMGLEAS-GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLI-LDHEAVGGFVTH 374 (487)
Q Consensus 298 -~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~l-l~~~~~~~~I~H 374 (487)
.++.++...++.+++++ ++.|||++...... . +++++..+ ...||...+|+||.++ |+|+++++||||
T Consensus 291 ~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~----~----~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTH 361 (496)
T KOG1192|consen 291 ADLPEEQKKELAKALESLQGVTFLWKYRPDDSI----Y----FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTH 361 (496)
T ss_pred ccCCHHHHHHHHHHHHhCCCceEEEEecCCcch----h----hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEEC
Confidence 68999999999999999 88899999976421 0 12221111 2457888999999998 699999999999
Q ss_pred cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHH
Q 046605 375 CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRA 454 (487)
Q Consensus 375 GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a 454 (487)
||+|||+|++++|||+|++|+++||+.||++++ +.|.|..+... ..+.+.+.+++.++++ +++|++++
T Consensus 362 gG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~~--------~~~~~~~~~~~~~il~---~~~y~~~~ 429 (496)
T KOG1192|consen 362 GGWNSTLESIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDKR--------DLVSEELLEAIKEILE---NEEYKEAA 429 (496)
T ss_pred CcccHHHHHHhcCCceecCCccccchhHHHHHH-hCCCEEEEehh--------hcCcHHHHHHHHHHHc---ChHHHHHH
Confidence 999999999999999999999999999999995 88777777766 6777669999999999 88999999
Q ss_pred HHHHHHHH
Q 046605 455 KAFGEMAK 462 (487)
Q Consensus 455 ~~l~~~~~ 462 (487)
+++++.++
T Consensus 430 ~~l~~~~~ 437 (496)
T KOG1192|consen 430 KRLSEILR 437 (496)
T ss_pred HHHHHHHH
Confidence 99999987
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.7e-25 Score=216.84 Aligned_cols=323 Identities=16% Similarity=0.126 Sum_probs=204.7
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLD 86 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (487)
|.||+|...|+-||++|.++||++|.++||+|+|++++.-.+. ... ...++.+..++.. ++. +..
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~---~l~----~~~g~~~~~~~~~----~l~----~~~ 65 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK---TII----EKENIPYYSISSG----KLR----RYF 65 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc---ccC----cccCCcEEEEecc----CcC----CCc
Confidence 4579999999999999999999999999999999997654321 110 0125677777521 111 100
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEEechhHHHHHHHHHhhhhc
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYE 164 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (487)
. +..+......... .-...+++++.+||+||+...+. .+..+|..+++|++....
T Consensus 66 ---~---~~~~~~~~~~~~~-~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~---------------- 122 (352)
T PRK12446 66 ---D---LKNIKDPFLVMKG-VMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES---------------- 122 (352)
T ss_pred ---h---HHHHHHHHHHHHH-HHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECC----------------
Confidence 1 1222222222211 22344678889999999976444 367889999999987622
Q ss_pred CCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHhC-
Q 046605 165 PHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKALG- 243 (487)
Q Consensus 165 ~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~- 243 (487)
..+|++.+ ++..++... ++-+|++. ...++
T Consensus 123 -----------n~~~g~~n-----------------------r~~~~~a~~-------v~~~f~~~--------~~~~~~ 153 (352)
T PRK12446 123 -----------DMTPGLAN-----------------------KIALRFASK-------IFVTFEEA--------AKHLPK 153 (352)
T ss_pred -----------CCCccHHH-----------------------HHHHHhhCE-------EEEEccch--------hhhCCC
Confidence 11222222 122221111 12223111 11122
Q ss_pred CceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCH-HHHHHHHHHHHhcCCcEEEEe
Q 046605 244 RRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTS-AQLMEIAMGLEASGQNFIWVV 322 (487)
Q Consensus 244 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~ 322 (487)
.++.++|+...+.-.. ...+...+.+.-.+++++|+|+.||...... +.+..++..+. .+++++|++
T Consensus 154 ~k~~~tG~Pvr~~~~~-----------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~ 221 (352)
T PRK12446 154 EKVIYTGSPVREEVLK-----------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLC 221 (352)
T ss_pred CCeEEECCcCCccccc-----------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEe
Confidence 5788999654331100 0111222223333457799999999997432 33444444443 258999999
Q ss_pred cCCCCCCCcccccccCchhHHHHhcCCCcEeeccc-c-hHhhhcccCccccccccCchhHHHHhhcCCcEeccCcc----
Q 046605 323 RKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWA-P-QVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVY---- 396 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~v-p-~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~---- 396 (487)
|.+.. .+.... ..++.+..|+ + ..+++..+++ +|||||.+|+.|++++|+|+|++|+.
T Consensus 222 G~~~~-----------~~~~~~---~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~ 285 (352)
T PRK12446 222 GKGNL-----------DDSLQN---KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFAS 285 (352)
T ss_pred CCchH-----------HHHHhh---cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCC
Confidence 87541 111110 1355667887 4 5679999998 99999999999999999999999974
Q ss_pred -ccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHH-HHHHHHHH
Q 046605 397 -AEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAE-EMRSRAKA 456 (487)
Q Consensus 397 -~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~-~~~~~a~~ 456 (487)
.||..||..+ ++.|+|+.+... +++++.|.+++.++++ |+ .|++++++
T Consensus 286 ~~~Q~~Na~~l-~~~g~~~~l~~~--------~~~~~~l~~~l~~ll~---~~~~~~~~~~~ 335 (352)
T PRK12446 286 RGDQILNAESF-ERQGYASVLYEE--------DVTVNSLIKHVEELSH---NNEKYKTALKK 335 (352)
T ss_pred CchHHHHHHHH-HHCCCEEEcchh--------cCCHHHHHHHHHHHHc---CHHHHHHHHHH
Confidence 4899999999 599999999876 8999999999999997 43 46554444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=2.7e-25 Score=214.69 Aligned_cols=309 Identities=21% Similarity=0.302 Sum_probs=197.3
Q ss_pred eEEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccc
Q 046605 8 LHIFFFPFL-AHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLD 86 (487)
Q Consensus 8 ~~Il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (487)
|||+|...+ +.||+..++.||++| |||+|+|++.....+.+.+. +....++... ........+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~----~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIPGLG----PIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEccCce----EeccCCccc
Confidence 789999877 999999999999999 69999999988654444322 2344342111 111111111
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhcCC
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPH 166 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
.... .................+.+.++..+||+||+|.. +.+..+|+..|+|++.+........
T Consensus 65 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~------------ 128 (318)
T PF13528_consen 65 RWKT---VRNNIRWLARLARRIRREIRWLREFRPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH------------ 128 (318)
T ss_pred hHHH---HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc------------
Confidence 1111 11111112233445566778888899999999954 4467789999999999977543321
Q ss_pred CCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhc--ccCccEEEEcchhhhcHHHHHHHHHHhCC
Q 046605 167 KKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDS--DLRSYGVVVNSFYELEHAYADHYRKALGR 244 (487)
Q Consensus 167 ~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~l~~~~~~~~~~~~~~ 244 (487)
+... +.....+..+..++... .......+.-++. .. .....
T Consensus 129 ------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~ 171 (318)
T PF13528_consen 129 ------------PNFW----------------LPWDQDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFF 171 (318)
T ss_pred ------------ccCC----------------cchhhhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccc
Confidence 0000 00000122222222221 2222323333332 10 11123
Q ss_pred ceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcC-CcEEEEec
Q 046605 245 RAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASG-QNFIWVVR 323 (487)
Q Consensus 245 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~ 323 (487)
++.++||+..+... +... .+++.|+|+||..... .++++++..+ +++++. +
T Consensus 172 ~~~~~~p~~~~~~~-------------------~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g 223 (318)
T PF13528_consen 172 RVPFVGPIIRPEIR-------------------ELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-G 223 (318)
T ss_pred cccccCchhccccc-------------------ccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-c
Confidence 45678887543211 1111 1345899999987643 6667777776 676666 4
Q ss_pred CCCCCCCcccccccCchhHHHHhcCCCcEeeccc-c-hHhhhcccCccccccccCchhHHHHhhcCCcEeccCc--cccc
Q 046605 324 KNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWA-P-QVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPV--YAEQ 399 (487)
Q Consensus 324 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~v-p-~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~--~~DQ 399 (487)
..... + ..+|+.+.+|. + ..++|..+++ +|+|||.||+.|++++|+|+|++|. ..||
T Consensus 224 ~~~~~----------~-------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ 284 (318)
T PF13528_consen 224 PNAAD----------P-------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQ 284 (318)
T ss_pred CCccc----------c-------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchH
Confidence 43311 1 15789999887 3 5779988887 9999999999999999999999998 7899
Q ss_pred hhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHH
Q 046605 400 FYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEI 441 (487)
Q Consensus 400 ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~l 441 (487)
..||+++ +++|+|+.+... +++++.|.+.|+++
T Consensus 285 ~~~a~~l-~~~G~~~~~~~~--------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 285 EYNARKL-EELGLGIVLSQE--------DLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHH-HHCCCeEEcccc--------cCCHHHHHHHHhcC
Confidence 9999999 799999999877 89999999999875
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1e-21 Score=187.89 Aligned_cols=312 Identities=18% Similarity=0.209 Sum_probs=196.6
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGV-KASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLD 86 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (487)
++|++...++-||+.|.++|+++|.++|+ +|.++.+....+..... ..++.++.++.. ++. +..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~----~~~----~~~ 65 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSG----GLR----RKG 65 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecc----ccc----ccC
Confidence 46888889999999999999999999999 57777554433222211 125677777532 111 111
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEEechhHHHHHHHHHhhhhc
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYE 164 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (487)
.. ..+......+ ....+.++++++.+||+||.-.-+. .+..+|..+|+|.+..
T Consensus 66 ~~------~~~~~~~~~~-~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih------------------ 120 (357)
T COG0707 66 SL------KLLKAPFKLL-KGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIH------------------ 120 (357)
T ss_pred cH------HHHHHHHHHH-HHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEE------------------
Confidence 11 1111111111 1134677888999999999966544 5677899999999876
Q ss_pred CCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHhCC
Q 046605 165 PHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKALGR 244 (487)
Q Consensus 165 ~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~ 244 (487)
+....||..++ +..+... .+..+|...+.- . -+.
T Consensus 121 ---------Eqn~~~G~ank-----------------------~~~~~a~-------~V~~~f~~~~~~----~---~~~ 154 (357)
T COG0707 121 ---------EQNAVPGLANK-----------------------ILSKFAK-------KVASAFPKLEAG----V---KPE 154 (357)
T ss_pred ---------ecCCCcchhHH-----------------------HhHHhhc-------eeeecccccccc----C---CCC
Confidence 22334444331 1111111 111222211100 0 013
Q ss_pred ceEEec-cccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCC-HHHHHHHHHHHHhcCCcEEEEe
Q 046605 245 RAWHIG-PVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFT-SAQLMEIAMGLEASGQNFIWVV 322 (487)
Q Consensus 245 ~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~ 322 (487)
++..+| |+...-.. ++..-..+.... ++++|+|+-||..... .+.+......+.+ ++++++.+
T Consensus 155 ~~~~tG~Pvr~~~~~-------------~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~ 219 (357)
T COG0707 155 NVVVTGIPVRPEFEE-------------LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQT 219 (357)
T ss_pred ceEEecCcccHHhhc-------------cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEc
Confidence 577777 44321110 011111122111 5779999999999732 2223333333333 57888888
Q ss_pred cCCCCCCCcccccccCchhHHHHhcCCC-cEeecccch-HhhhcccCccccccccCchhHHHHhhcCCcEeccCcc----
Q 046605 323 RKNKNNGGEEEKEDWLPEGFEKRMEGKG-LIIRGWAPQ-VLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVY---- 396 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~~~~~~~~~~n-v~~~~~vp~-~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~---- 396 (487)
+.+.. +.....+...+ +.+..|+.+ ..+++.+++ +||++|.+|+.|+++.|+|+|.+|..
T Consensus 220 G~~~~------------~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~ 285 (357)
T COG0707 220 GKNDL------------EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGAD 285 (357)
T ss_pred CcchH------------HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCcc
Confidence 87641 12222333344 788889886 559988888 99999999999999999999999963
Q ss_pred ccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhc
Q 046605 397 AEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 397 ~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
.||..||..+ ++.|.|..+... ++|.++|.+.|.++++
T Consensus 286 ~~Q~~NA~~l-~~~gaa~~i~~~--------~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 286 GHQEYNAKFL-EKAGAALVIRQS--------ELTPEKLAELILRLLS 323 (357)
T ss_pred chHHHHHHHH-HhCCCEEEeccc--------cCCHHHHHHHHHHHhc
Confidence 3899999999 699999999987 8999999999999998
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=4.8e-22 Score=191.56 Aligned_cols=309 Identities=16% Similarity=0.161 Sum_probs=173.4
Q ss_pred EEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCccee-EEEeeCCCccCCCCCCCcccc
Q 046605 9 HIFFFPFL-AHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELD-VKIIKFPSAEAGLPEGWENLD 86 (487)
Q Consensus 9 ~Il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~-~~~i~~~~~~~~~~~~~~~~~ 86 (487)
||++...+ +.||+.|.++|+++|.+ ||+|+|+++......+... ++. +..+|.... ....+ ..+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~--~~~~~--~~~ 66 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKL--KGEDG--KVN 66 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceE--eecCC--cCc
Confidence 57787666 66999999999999999 9999999987644333333 232 322221100 00111 011
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhcCC
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPH 166 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
. ...+...............+++++++||+||+| ..+.+..+|+.+|||++.+..+....
T Consensus 67 ---~---~~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------------- 126 (321)
T TIGR00661 67 ---I---VKTLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------------- 126 (321)
T ss_pred ---H---HHHHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-------------
Confidence 0 111110001101223345678888999999999 55556779999999999886421100
Q ss_pred CCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccC-ccEEEEcchhhhcHHHHHHHHHHhCCc
Q 046605 167 KKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLR-SYGVVVNSFYELEHAYADHYRKALGRR 245 (487)
Q Consensus 167 ~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~l~~~~~~~~~~~~~~~ 245 (487)
.|+.. + . ...+.......+.. ........+.....- .++.
T Consensus 127 -----------~~~~~-------~----~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~p~~ 167 (321)
T TIGR00661 127 -----------YPLKT-------D----L---------IVYPTMAALRIFNERCERFIVPDYPFPYTI--------CPKI 167 (321)
T ss_pred -----------CCccc-------c----h---------hHHHHHHHHHHhccccceEeeecCCCCCCC--------Cccc
Confidence 01100 0 0 11111111111111 111111221111100 0000
Q ss_pred eE-EeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCC-cEEEEec
Q 046605 246 AW-HIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQ-NFIWVVR 323 (487)
Q Consensus 246 ~~-~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~-~~i~~~~ 323 (487)
+. .-+|. ...+..++... +.+.|+|.+|+... ..+++++++.+. .++ ++
T Consensus 168 ~~~~~~~~-------------------~~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i--~~ 218 (321)
T TIGR00661 168 IKNMEGPL-------------------IRYDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIANVKFV--CY 218 (321)
T ss_pred cccCCCcc-------------------cchhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCCeEEE--Ee
Confidence 00 00111 11122223222 24478888887542 345667777653 343 22
Q ss_pred CCCCCCCcccccccCchhHHHHhcCCCcEeecccc--hHhhhcccCccccccccCchhHHHHhhcCCcEeccCccc--cc
Q 046605 324 KNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAP--QVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYA--EQ 399 (487)
Q Consensus 324 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp--~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--DQ 399 (487)
.... ..+.+ ++|+.+.+|.| ..++|+.+++ +|||||.+|+.||+++|+|+|++|... ||
T Consensus 219 ~~~~----------~~~~~-----~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ 281 (321)
T TIGR00661 219 SYEV----------AKNSY-----NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQ 281 (321)
T ss_pred CCCC----------Ccccc-----CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccH
Confidence 2211 11111 36899999997 4567777777 999999999999999999999999854 89
Q ss_pred hhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHH
Q 046605 400 FYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMR 451 (487)
Q Consensus 400 ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 451 (487)
..||..+ ++.|+|+.+... ++ ++.+++.++++ ++.|+
T Consensus 282 ~~na~~l-~~~g~~~~l~~~--------~~---~~~~~~~~~~~---~~~~~ 318 (321)
T TIGR00661 282 GNNAVKL-EDLGCGIALEYK--------EL---RLLEAILDIRN---MKRYK 318 (321)
T ss_pred HHHHHHH-HHCCCEEEcChh--------hH---HHHHHHHhccc---ccccc
Confidence 9999999 599999999765 44 66667767776 55553
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.84 E-value=4.2e-18 Score=167.29 Aligned_cols=327 Identities=13% Similarity=0.099 Sum_probs=194.7
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCc--cchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNA--PHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
||||+|+..+..||...++.|+++|.++||+|++++.+... ...+. .+++++.++.+. ... ...
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~---------~g~~~~~~~~~~----~~~-~~~ 66 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK---------AGIEFHFIPSGG----LRR-KGS 66 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc---------CCCcEEEEeccC----cCC-CCh
Confidence 58899999988899999999999999999999999986521 11111 255666665221 110 000
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCC--cchHHHHHHhCCCeEEEechhHHHHHHHHHhhh
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFF--PWATDAAAKFGIPRLVFHGTSFFSLCAIKCLAL 162 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 162 (487)
...+..... .......+.+++++.+||+|++.... ..+..++...++|+|.....
T Consensus 67 ---------~~~l~~~~~-~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~------------- 123 (357)
T PRK00726 67 ---------LANLKAPFK-LLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN------------- 123 (357)
T ss_pred ---------HHHHHHHHH-HHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-------------
Confidence 011111111 12223456778888999999999632 24556678889999854110
Q ss_pred hcCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHh
Q 046605 163 YEPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKAL 242 (487)
Q Consensus 163 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 242 (487)
..|+ + ..++..+ .++.++..+-.. +.. .-
T Consensus 124 --------------~~~~--------------~---------~~r~~~~------~~d~ii~~~~~~-----~~~---~~ 152 (357)
T PRK00726 124 --------------AVPG--------------L---------ANKLLAR------FAKKVATAFPGA-----FPE---FF 152 (357)
T ss_pred --------------CCcc--------------H---------HHHHHHH------HhchheECchhh-----hhc---cC
Confidence 0000 0 1111111 111112111110 100 12
Q ss_pred CCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCC--cEEE
Q 046605 243 GRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQ--NFIW 320 (487)
Q Consensus 243 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~--~~i~ 320 (487)
+.++.++|+........ . +..-.. +...++.++|++..|+... ......+.++++++.. .++|
T Consensus 153 ~~~i~vi~n~v~~~~~~---------~---~~~~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~ 217 (357)
T PRK00726 153 KPKAVVTGNPVREEILA---------L---AAPPAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIH 217 (357)
T ss_pred CCCEEEECCCCChHhhc---------c---cchhhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEE
Confidence 36788888653321100 0 000011 1222234466665555332 2222333366665433 4555
Q ss_pred EecCCCCCCCcccccccCchhHHHHhc-CCCcEeecccc-hHhhhcccCccccccccCchhHHHHhhcCCcEeccCc---
Q 046605 321 VVRKNKNNGGEEEKEDWLPEGFEKRME-GKGLIIRGWAP-QVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPV--- 395 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~vp-~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~--- 395 (487)
.+|.... +.+....+ .-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|.
T Consensus 218 ~~G~g~~------------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~ 283 (357)
T PRK00726 218 QTGKGDL------------EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHA 283 (357)
T ss_pred EcCCCcH------------HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCC
Confidence 6665432 12222222 22377889985 5689999998 9999999999999999999999996
Q ss_pred -cccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 046605 396 -YAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAK 462 (487)
Q Consensus 396 -~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 462 (487)
..||..++..+ .+.|.|+.+..+ +++++.|.++|.++++ |+++++++.+-+..+.
T Consensus 284 ~~~~~~~~~~~i-~~~~~g~~~~~~--------~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~ 339 (357)
T PRK00726 284 ADDHQTANARAL-VDAGAALLIPQS--------DLTPEKLAEKLLELLS---DPERLEAMAEAARALG 339 (357)
T ss_pred CcCcHHHHHHHH-HHCCCEEEEEcc--------cCCHHHHHHHHHHHHc---CHHHHHHHHHHHHhcC
Confidence 36899999999 599999999876 6789999999999998 7777766655554443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.78 E-value=1.2e-16 Score=156.65 Aligned_cols=323 Identities=15% Similarity=0.114 Sum_probs=189.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAI 88 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~ 88 (487)
||++...+..||......|++.|.++||+|++++....... ... ...++++..+++... . +...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~------~~~~~~~~~~~~~~~----~-~~~~---- 64 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV------PKAGIPLHTIPVGGL----R-RKGS---- 64 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc------cccCCceEEEEecCc----C-CCCh----
Confidence 58899999899999999999999999999999987642111 100 012466666653211 0 0001
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEEechhHHHHHHHHHhhhhcCC
Q 046605 89 TNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPH 166 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
...+...... ......+.+++++.+||+|++..... .+..+|...++|++.....
T Consensus 65 -----~~~~~~~~~~-~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~----------------- 121 (350)
T cd03785 65 -----LKKLKAPFKL-LKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN----------------- 121 (350)
T ss_pred -----HHHHHHHHHH-HHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-----------------
Confidence 1111111111 12234567778889999999876332 4566788889998853110
Q ss_pred CCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHhCCce
Q 046605 167 KKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKALGRRA 246 (487)
Q Consensus 167 ~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~ 246 (487)
.++. + ..++.. ..++.++..+-...+ + ..+.++
T Consensus 122 -------------~~~~-----------~---------~~~~~~------~~~~~vi~~s~~~~~-----~---~~~~~~ 154 (350)
T cd03785 122 -------------AVPG-----------L---------ANRLLA------RFADRVALSFPETAK-----Y---FPKDKA 154 (350)
T ss_pred -------------CCcc-----------H---------HHHHHH------HhhCEEEEcchhhhh-----c---CCCCcE
Confidence 0000 0 111110 112333332211111 1 113567
Q ss_pred EEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCC-HHHHHHHHHHHHhcCCcEEEEecCC
Q 046605 247 WHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFT-SAQLMEIAMGLEASGQNFIWVVRKN 325 (487)
Q Consensus 247 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~a~~~~~~~~i~~~~~~ 325 (487)
.++|........ . .... ...+...+++.+|++..|+..... .+.+...+..+.+.+..+++.+|..
T Consensus 155 ~~i~n~v~~~~~--~----------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g 221 (350)
T cd03785 155 VVTGNPVREEIL--A----------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG 221 (350)
T ss_pred EEECCCCchHHh--h----------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc
Confidence 788864332100 0 0011 222222334446666666654321 1222233333433344556666654
Q ss_pred CCCCCcccccccCchhHHHHhc--CCCcEeeccc-chHhhhcccCccccccccCchhHHHHhhcCCcEeccCc----ccc
Q 046605 326 KNNGGEEEKEDWLPEGFEKRME--GKGLIIRGWA-PQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPV----YAE 398 (487)
Q Consensus 326 ~~~~~~~~~~~~lp~~~~~~~~--~~nv~~~~~v-p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~----~~D 398 (487)
.. +.+.+... .+|+.+.+|+ ...++|+.+++ +|+++|.+|+.||+++|+|+|+.|. ..+
T Consensus 222 ~~------------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~ 287 (350)
T cd03785 222 DL------------EEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDH 287 (350)
T ss_pred cH------------HHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCc
Confidence 21 12222111 3689999998 45779999888 9999999999999999999999985 357
Q ss_pred chhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHH
Q 046605 399 QFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKA 456 (487)
Q Consensus 399 Q~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 456 (487)
|..++..++ +.|.|+.+... +.+.++|.++|.++++ +++.++++.+
T Consensus 288 ~~~~~~~l~-~~g~g~~v~~~--------~~~~~~l~~~i~~ll~---~~~~~~~~~~ 333 (350)
T cd03785 288 QTANARALV-KAGAAVLIPQE--------ELTPERLAAALLELLS---DPERLKAMAE 333 (350)
T ss_pred HHHhHHHHH-hCCCEEEEecC--------CCCHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 889999994 89999999765 5799999999999998 5555544433
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.73 E-value=2.8e-15 Score=146.82 Aligned_cols=317 Identities=18% Similarity=0.221 Sum_probs=175.3
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCcc--chhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAP--HLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
|||+|++.+..||+.....|+++|.++||+|++++.+.... ..+. .+++++.++... .. .. .
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~---------~g~~~~~i~~~~----~~-~~-~- 64 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPK---------AGIEFYFIPVGG----LR-RK-G- 64 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccccc---------CCCceEEEeccC----cC-CC-C-
Confidence 48999999999999988899999999999999998743211 0111 256666665211 00 00 0
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEEechhHHHHHHHHHhhhh
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVFHGTSFFSLCAIKCLALY 163 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 163 (487)
. ...+...... ......+.+++++.+||+|++..... .+..++..+++|++.....
T Consensus 65 ----~---~~~l~~~~~~-~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~-------------- 122 (348)
T TIGR01133 65 ----S---FRLIKTPLKL-LKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN-------------- 122 (348)
T ss_pred ----h---HHHHHHHHHH-HHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC--------------
Confidence 0 1222111111 12234677888999999999986433 3455688889998743110
Q ss_pred cCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHhC
Q 046605 164 EPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKALG 243 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 243 (487)
. .+. + ..++.. ...+.++..+- ... +++
T Consensus 123 -------------~---~~~-----------~---------~~~~~~------~~~d~ii~~~~-~~~----~~~----- 150 (348)
T TIGR01133 123 -------------A---VPG-----------L---------TNKLLS------RFAKKVLISFP-GAK----DHF----- 150 (348)
T ss_pred -------------C---Ccc-----------H---------HHHHHH------HHhCeeEECch-hHh----hcC-----
Confidence 0 000 0 111111 11222222221 110 000
Q ss_pred CceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHh---cCCcEEE
Q 046605 244 RRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEA---SGQNFIW 320 (487)
Q Consensus 244 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~ 320 (487)
...+||........ . . +.. .+.+...+++++|.+..|+... ......+.++++. .+.++++
T Consensus 151 -~~~~i~n~v~~~~~--~-------~---~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~ 214 (348)
T TIGR01133 151 -EAVLVGNPVRQEIR--S-------L---PVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVH 214 (348)
T ss_pred -CceEEcCCcCHHHh--c-------c---cch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEE
Confidence 12455532211000 0 0 000 1122222233455444455442 2212223344443 3456665
Q ss_pred EecCCCCCCCcccccccCchhHHHHhcCCCc-Eeeccc--chHhhhcccCccccccccCchhHHHHhhcCCcEeccCcc-
Q 046605 321 VVRKNKNNGGEEEKEDWLPEGFEKRMEGKGL-IIRGWA--PQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVY- 396 (487)
Q Consensus 321 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv-~~~~~v--p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~- 396 (487)
..++.. . +.+.......++ .++.|. +..++|+.+++ +|+++|.+++.||+++|+|+|+.|..
T Consensus 215 ~~g~~~-----------~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~ 280 (348)
T TIGR01133 215 QTGKND-----------L-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPY 280 (348)
T ss_pred ECCcch-----------H-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCC
Confidence 444432 1 122222222221 222333 45778999998 99999988999999999999999863
Q ss_pred --ccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHH
Q 046605 397 --AEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKA 456 (487)
Q Consensus 397 --~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 456 (487)
.+|..++..+ +..|.|..+... +.++++|.++|.++++ |++.++++.+
T Consensus 281 ~~~~~~~~~~~i-~~~~~G~~~~~~--------~~~~~~l~~~i~~ll~---~~~~~~~~~~ 330 (348)
T TIGR01133 281 AADDQYYNAKFL-EDLGAGLVIRQK--------ELLPEKLLEALLKLLL---DPANLEAMAE 330 (348)
T ss_pred CccchhhHHHHH-HHCCCEEEEecc--------cCCHHHHHHHHHHHHc---CHHHHHHHHH
Confidence 4678889899 589999988765 6789999999999998 6666544433
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.71 E-value=1.5e-15 Score=138.39 Aligned_cols=344 Identities=13% Similarity=0.109 Sum_probs=199.6
Q ss_pred CCceEEEEEcCC--CCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCC
Q 046605 5 ICQLHIFFFPFL--AHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPE 80 (487)
Q Consensus 5 ~~~~~Il~~~~~--~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~ 80 (487)
.+++||+|.+.- +.||+..++.||++|.+. |.+|++++...-..-+.- ..+++|..+|.-... ..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~---~~ 75 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKG---DN 75 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEec---CC
Confidence 467799999955 779999999999999998 999999998655433332 147889988742221 11
Q ss_pred CCcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHh
Q 046605 81 GWENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCL 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 160 (487)
+.....+... + ..+..+.-..-+.+.++..+||++|+|.+-+. . ..+.. ++.. ++
T Consensus 76 G~~~~~d~~~----~----l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~G-l-r~EL~-------------ptL~--yl 130 (400)
T COG4671 76 GEYGLVDLDG----D----LEETKKLRSQLILSTAETFKPDIFIVDKFPFG-L-RFELL-------------PTLE--YL 130 (400)
T ss_pred CceeeeecCC----C----HHHHHHHHHHHHHHHHHhcCCCEEEEeccccc-h-hhhhh-------------HHHH--HH
Confidence 1111111111 1 12222223445677788899999999966443 1 11110 0000 00
Q ss_pred hhhcCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHH
Q 046605 161 ALYEPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRK 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 240 (487)
.. .. .+..+..+.+.+........++-......+.+.+......--..|+.+... ++ ...
T Consensus 131 ~~-----------~~-------t~~vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~yD~V~v~GdP~f~d~~~~-~~-~~~ 190 (400)
T COG4671 131 KT-----------TG-------TRLVLGLRSIRDIPQELEADWRRAETVRLINRFYDLVLVYGDPDFYDPLTE-FP-FAP 190 (400)
T ss_pred hh-----------cC-------CcceeehHhhhhchhhhccchhhhHHHHHHHHhheEEEEecCccccChhhc-CC-ccH
Confidence 00 00 000011111111100011111111122222221111111112334433322 11 122
Q ss_pred HhCCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHh-cCCcEE
Q 046605 241 ALGRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEA-SGQNFI 319 (487)
Q Consensus 241 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~-~~~~~i 319 (487)
....++.++|.+ ..+..... .+ +... +++.-|+||-|--. ...+.+...++|-.. .+.+-.
T Consensus 191 ~i~~k~~ytG~v-q~~~~~~~----------~p-----~~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~ 252 (400)
T COG4671 191 AIRAKMRYTGFV-QRSLPHLP----------LP-----PHEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHK 252 (400)
T ss_pred hhhhheeEeEEe-eccCcCCC----------CC-----CcCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcc
Confidence 234789999998 32111000 01 1111 34447888887554 356667777666554 344434
Q ss_pred EEecCCCCCCCcccccccCchhHHHHh-----cCCCcEeecccch-HhhhcccCccccccccCchhHHHHhhcCCcEecc
Q 046605 320 WVVRKNKNNGGEEEKEDWLPEGFEKRM-----EGKGLIIRGWAPQ-VLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTW 393 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~nv~~~~~vp~-~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 393 (487)
|.+-.++. +|+..+.+. +.+++.+..|-.+ ..++..++. +|+-||.||++|-|.+|+|.|++
T Consensus 253 ~~ivtGP~----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLiv 320 (400)
T COG4671 253 WLIVTGPF----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIV 320 (400)
T ss_pred eEEEeCCC----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEe
Confidence 44443332 665444332 2488999999886 558888777 99999999999999999999999
Q ss_pred Ccc---ccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhc
Q 046605 394 PVY---AEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 394 P~~---~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
|.. .||-.-|.|+ +++|+.-.+..+ +++++.|.++|...++
T Consensus 321 Pr~~p~eEQliRA~Rl-~~LGL~dvL~pe--------~lt~~~La~al~~~l~ 364 (400)
T COG4671 321 PRAAPREEQLIRAQRL-EELGLVDVLLPE--------NLTPQNLADALKAALA 364 (400)
T ss_pred ccCCCcHHHHHHHHHH-HhcCcceeeCcc--------cCChHHHHHHHHhccc
Confidence 975 4899999999 699999999988 9999999999999986
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.69 E-value=6.5e-15 Score=145.02 Aligned_cols=346 Identities=13% Similarity=0.080 Sum_probs=191.4
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCc--ceeEEEeeCCCccCCCCCCCccc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGI--ELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~--~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
+||+|+..++.||++|. +|+++|.++|++|+|+....- .+++. |. .++++.++. .+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~-------g~~~~~~~~~l~v--------~G~--- 64 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAE-------GCEVLYSMEELSV--------MGL--- 64 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhC-------cCccccChHHhhh--------ccH---
Confidence 57999999999999999 999999999999999986421 33333 11 122222210 000
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEe-CCCCcc--hHHHHHHhCCCeEEEechhHHHHHHHHHhhh
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVA-DMFFPW--ATDAAAKFGIPRLVFHGTSFFSLCAIKCLAL 162 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~-D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 162 (487)
.+.+..+.. .........+++++.+||+||. |+..+. ....|+.+|+|++.+.+..
T Consensus 65 --------~~~l~~~~~-~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~------------ 123 (385)
T TIGR00215 65 --------REVLGRLGR-LLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQ------------ 123 (385)
T ss_pred --------HHHHHHHHH-HHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCc------------
Confidence 111111111 1223347788899999999885 542323 2237889999999763210
Q ss_pred hcCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHh
Q 046605 163 YEPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKAL 242 (487)
Q Consensus 163 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 242 (487)
.+. +... ....+.+....+. -.++ .+.+. +. ..
T Consensus 124 ------------------~wa---w~~~----------~~r~l~~~~d~v~-----------~~~~-~e~~~---~~-~~ 156 (385)
T TIGR00215 124 ------------------VWA---WRKW----------RAKKIEKATDFLL-----------AILP-FEKAF---YQ-KK 156 (385)
T ss_pred ------------------Hhh---cCcc----------hHHHHHHHHhHhh-----------ccCC-CcHHH---HH-hc
Confidence 000 0000 0001112222111 1111 12221 22 22
Q ss_pred CCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhc-----CCc
Q 046605 243 GRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEAS-----GQN 317 (487)
Q Consensus 243 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~ 317 (487)
+.+..+||.-....... ......+..+-+.-.+++++|.+--||....-......+++++..+ +.+
T Consensus 157 g~~~~~vGnPv~~~~~~---------~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~ 227 (385)
T TIGR00215 157 NVPCRFVGHPLLDAIPL---------YKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLR 227 (385)
T ss_pred CCCEEEECCchhhhccc---------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeE
Confidence 34677898432211000 0001222222233334566888888887753234455566655543 334
Q ss_pred EEEEecCCCCCCCcccccccCchhHHHHhc-CCCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEecc---
Q 046605 318 FIWVVRKNKNNGGEEEKEDWLPEGFEKRME-GKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTW--- 393 (487)
Q Consensus 318 ~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~--- 393 (487)
+++........ +. + +.+..... ...+.+..+ ...++++.+++ +|+-.|..|+ |++++|+|+|++
T Consensus 228 ~vi~~~~~~~~---~~----~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~ 295 (385)
T TIGR00215 228 RVLPVVNFKRR---LQ----F-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRM 295 (385)
T ss_pred EEEEeCCchhH---HH----H-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcC
Confidence 55544432210 01 1 01111111 112322222 34568988888 9999999887 999999999999
Q ss_pred -Cccc---------cchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHH----HHHHHHHHHHH
Q 046605 394 -PVYA---------EQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAE----EMRSRAKAFGE 459 (487)
Q Consensus 394 -P~~~---------DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~----~~~~~a~~l~~ 459 (487)
|+.. +|..|+..++ ..++...+... +.|++.|.+.+.++|+ |+ +++++.+.--.
T Consensus 296 ~pl~~~~~~~~~~~~~~~~~nil~-~~~~~pel~q~--------~~~~~~l~~~~~~ll~---~~~~~~~~~~~~~~~~~ 363 (385)
T TIGR00215 296 KPLTFLIARRLVKTDYISLPNILA-NRLLVPELLQE--------ECTPHPLAIALLLLLE---NGLKAYKEMHRERQFFE 363 (385)
T ss_pred CHHHHHHHHHHHcCCeeeccHHhc-CCccchhhcCC--------CCCHHHHHHHHHHHhc---CCcccHHHHHHHHHHHH
Confidence 7632 3888999995 88999988766 8999999999999998 55 44444444444
Q ss_pred HHHHHHhcCCCcHHHH
Q 046605 460 MAKRAVENGGSSSSNL 475 (487)
Q Consensus 460 ~~~~a~~~~g~~~~~~ 475 (487)
.+++.+.++|.+..+.
T Consensus 364 ~~~~~l~~~~~~~~~a 379 (385)
T TIGR00215 364 ELRQRIYCNADSERAA 379 (385)
T ss_pred HHHHHhcCCCHHHHHH
Confidence 4444334555555433
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=1.1e-14 Score=144.21 Aligned_cols=141 Identities=16% Similarity=0.247 Sum_probs=99.7
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhc-CCcEEEEecCCCCCCCcccccccCchhHHHHh--cCCCcEeecccch-H
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEAS-GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM--EGKGLIIRGWAPQ-V 360 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~vp~-~ 360 (487)
++++|++.-|+.... ..+..+++++.+. +.++++..+.+.. +-+.++... .++|+.+.+|+++ .
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~----------~~~~l~~~~~~~~~~v~~~g~~~~~~ 268 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA----------LKQSLEDLQETNPDALKVFGYVENID 268 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH----------HHHHHHHHHhcCCCcEEEEechhhHH
Confidence 456777777876532 2355667777654 5677777664321 111222211 1358999999987 4
Q ss_pred hhhcccCccccccccCchhHHHHhhcCCcEecc-CccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHH
Q 046605 361 LILDHEAVGGFVTHCGWNSILEGVTAGVPLVTW-PVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVN 439 (487)
Q Consensus 361 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~-P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~ 439 (487)
+++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ +..|+|+.. .+.++|.++|.
T Consensus 269 ~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~------------~~~~~l~~~i~ 333 (380)
T PRK13609 269 ELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI------------RDDEEVFAKTE 333 (380)
T ss_pred HHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE------------CCHHHHHHHHH
Confidence 79999998 99999988999999999999985 6667778899888 588888753 25789999999
Q ss_pred HHhcCchHHHHHHHHH
Q 046605 440 EIMMGDRAEEMRSRAK 455 (487)
Q Consensus 440 ~ll~~~~~~~~~~~a~ 455 (487)
++++ |++.++++.
T Consensus 334 ~ll~---~~~~~~~m~ 346 (380)
T PRK13609 334 ALLQ---DDMKLLQMK 346 (380)
T ss_pred HHHC---CHHHHHHHH
Confidence 9998 655554433
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.68 E-value=4.7e-15 Score=139.26 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=79.6
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHhc--CCcEEEEecCCCCCCCcccccccCchhHHHHh-cCCCcEeecccchH-h
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEAS--GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM-EGKGLIIRGWAPQV-L 361 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~vp~~-~ 361 (487)
.+.|+|+||..-. ......+++++.+. +.++.+++|.... ..+.++... ..+|+.+..++++. +
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~----------~~~~l~~~~~~~~~i~~~~~~~~m~~ 237 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNP----------NLDELKKFAKEYPNIILFIDVENMAE 237 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCc----------CHHHHHHHHHhCCCEEEEeCHHHHHH
Confidence 3579999995553 22455666777654 5678888877643 222333322 24689999999975 7
Q ss_pred hhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHH
Q 046605 362 ILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKI 405 (487)
Q Consensus 362 ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~r 405 (487)
+|..+++ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 238 lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 238 LMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9999998 999999 9999999999999999999999999874
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.61 E-value=2e-13 Score=135.23 Aligned_cols=132 Identities=16% Similarity=0.266 Sum_probs=95.4
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHH-Hhc-CCcEEEEecCCCCCCCcccccccCchhHHHHh-cCCCcEeecccch-H
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGL-EAS-GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM-EGKGLIIRGWAPQ-V 360 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~-~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~vp~-~ 360 (487)
++++|+++.|+... ...+..+++++ +.. +.++++.+|.+.. +-+.+.... ..+++.+.+|+.+ .
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~----------l~~~l~~~~~~~~~v~~~G~~~~~~ 268 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE----------LKRSLTAKFKSNENVLILGYTKHMN 268 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH----------HHHHHHHHhccCCCeEEEeccchHH
Confidence 46688888898763 23445555553 322 4577676664421 111222222 2467889999975 5
Q ss_pred hhhcccCccccccccCchhHHHHhhcCCcEecc-CccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHH
Q 046605 361 LILDHEAVGGFVTHCGWNSILEGVTAGVPLVTW-PVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVN 439 (487)
Q Consensus 361 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~-P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~ 439 (487)
++++.+++ +|+..|..|+.||+++|+|+|+. |..++|..|+..+ ++.|+|+.. -+.+++.++|.
T Consensus 269 ~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~------------~~~~~l~~~i~ 333 (391)
T PRK13608 269 EWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA------------DTPEEAIKIVA 333 (391)
T ss_pred HHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe------------CCHHHHHHHHH
Confidence 69999998 99988888999999999999998 6667778999999 699999764 26788999999
Q ss_pred HHhc
Q 046605 440 EIMM 443 (487)
Q Consensus 440 ~ll~ 443 (487)
++++
T Consensus 334 ~ll~ 337 (391)
T PRK13608 334 SLTN 337 (391)
T ss_pred HHhc
Confidence 9997
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.58 E-value=6.4e-13 Score=131.70 Aligned_cols=352 Identities=13% Similarity=0.068 Sum_probs=177.3
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLD 86 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (487)
+|||+|+..++.||++|.. ++++|.++++++.++..... .+++... ...++++.++.
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~l~~--------------- 57 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC-----ESLFDMEELAV--------------- 57 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC-----ccccCHHHhhh---------------
Confidence 4689999999999999999 99999998888887764321 2332200 00122222210
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCC-Ccch--HHHHHHhCCCeEEEechhHHHHHHHHHhhhh
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMF-FPWA--TDAAAKFGIPRLVFHGTSFFSLCAIKCLALY 163 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~-~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 163 (487)
... .+.+..+. ........+.+++++++||+|++-.. ..+. ...|...|+|++.......
T Consensus 58 -~g~---~~~~~~~~-~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~------------ 120 (380)
T PRK00025 58 -MGL---VEVLPRLP-RLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV------------ 120 (380)
T ss_pred -ccH---HHHHHHHH-HHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch------------
Confidence 000 11111111 11223456788899999999876332 2233 3346778999886521100
Q ss_pred cCCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHhC
Q 046605 164 EPHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKALG 243 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 243 (487)
+. ..+. ....+. ..++.++..+ .. +... +. ..+
T Consensus 121 ------------------~~-------~~~~---------~~~~~~-------~~~d~i~~~~-~~-~~~~---~~-~~g 153 (380)
T PRK00025 121 ------------------WA-------WRQG---------RAFKIA-------KATDHVLALF-PF-EAAF---YD-KLG 153 (380)
T ss_pred ------------------hh-------cCch---------HHHHHH-------HHHhhheeCC-cc-CHHH---HH-hcC
Confidence 00 0000 011110 1112222222 11 1111 21 123
Q ss_pred CceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhc-----CCcE
Q 046605 244 RRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEAS-----GQNF 318 (487)
Q Consensus 244 ~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~ 318 (487)
.++.++|........ .........+-+.-.+++++|++..||...........++++++.+ +.++
T Consensus 154 ~~~~~~G~p~~~~~~----------~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ 223 (380)
T PRK00025 154 VPVTFVGHPLADAIP----------LLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRF 223 (380)
T ss_pred CCeEEECcCHHHhcc----------cccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 347788832221100 0001222333333333445666766765542223344555555432 3467
Q ss_pred EEEecCCCCCCCcccccccCchhHHHHhcC---CCcEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCc
Q 046605 319 IWVVRKNKNNGGEEEKEDWLPEGFEKRMEG---KGLIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPV 395 (487)
Q Consensus 319 i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~---~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 395 (487)
+++.+.... -+.+...... -++.+.+ -.-..+++.+++ +|+-+|.+++ ||+++|+|+|+.|.
T Consensus 224 ii~~~~~~~-----------~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~ 288 (380)
T PRK00025 224 VLPLVNPKR-----------REQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYK 288 (380)
T ss_pred EEecCChhh-----------HHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEc
Confidence 776542221 1122221111 1333322 124668888888 9999998777 99999999999854
Q ss_pred cc--------cchhh-----HHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Q 046605 396 YA--------EQFYN-----EKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAK 462 (487)
Q Consensus 396 ~~--------DQ~~~-----a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~ 462 (487)
.. .|..| +..+ ...+++..+... ..++++|.+++.++++ |++.++++.+-.+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~--------~~~~~~l~~~i~~ll~---~~~~~~~~~~~~~~~~ 356 (380)
T PRK00025 289 VSPLTFWIAKRLVKVPYVSLPNLL-AGRELVPELLQE--------EATPEKLARALLPLLA---DGARRQALLEGFTELH 356 (380)
T ss_pred cCHHHHHHHHHHHcCCeeehHHHh-cCCCcchhhcCC--------CCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 32 12111 2333 233334444444 6799999999999998 6766655544444444
Q ss_pred HHHhcCCCcHHHHHHHHHHHhh
Q 046605 463 RAVENGGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 463 ~a~~~~g~~~~~~~~~~~~l~~ 484 (487)
+.. ..|.+ ..+.++|..+..
T Consensus 357 ~~~-~~~a~-~~~~~~i~~~~~ 376 (380)
T PRK00025 357 QQL-RCGAD-ERAAQAVLELLK 376 (380)
T ss_pred HHh-CCCHH-HHHHHHHHHHhh
Confidence 333 33433 445555555443
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.56 E-value=1.3e-16 Score=138.60 Aligned_cols=135 Identities=17% Similarity=0.201 Sum_probs=97.6
Q ss_pred EEEEeccCcccCC-HHHHHHHHHHHHh--cCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccc-hHhhh
Q 046605 288 VVYICFGSVANFT-SAQLMEIAMGLEA--SGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAP-QVLIL 363 (487)
Q Consensus 288 ~v~vs~Gs~~~~~-~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp-~~~ll 363 (487)
+|+|+.||..... .+.+..+...+.. ..+++++.+|..... ....... . ...|+.+.+|++ ..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~----~~~~~~~-~-----~~~~v~~~~~~~~m~~~m 70 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE----ELKIKVE-N-----FNPNVKVFGFVDNMAELM 70 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH----HHCCCHC-C-----TTCCCEEECSSSSHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH----HHHHHHh-c-----cCCcEEEEechhhHHHHH
Confidence 5899999887521 1122223333332 257999999987421 1110000 0 026899999999 78899
Q ss_pred cccCccccccccCchhHHHHhhcCCcEeccCccc----cchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHH
Q 046605 364 DHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYA----EQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVN 439 (487)
Q Consensus 364 ~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~----DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~ 439 (487)
..+++ +|||||.||++|++++|+|+|++|... +|..||..+ ++.|+|..+... ..+.+.|.++|.
T Consensus 71 ~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~--------~~~~~~L~~~i~ 139 (167)
T PF04101_consen 71 AAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDES--------ELNPEELAEAIE 139 (167)
T ss_dssp HHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECC--------C-SCCCHHHHHH
T ss_pred HHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcc--------cCCHHHHHHHHH
Confidence 99998 999999999999999999999999988 999999999 599999999876 788999999999
Q ss_pred HHhc
Q 046605 440 EIMM 443 (487)
Q Consensus 440 ~ll~ 443 (487)
++++
T Consensus 140 ~l~~ 143 (167)
T PF04101_consen 140 ELLS 143 (167)
T ss_dssp CHCC
T ss_pred HHHc
Confidence 9997
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.50 E-value=2e-11 Score=120.81 Aligned_cols=141 Identities=20% Similarity=0.140 Sum_probs=95.3
Q ss_pred hHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHh---------cCCcEEEEecCCCCCCCcccccccCchhHHHH
Q 046605 275 ECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEA---------SGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKR 345 (487)
Q Consensus 275 ~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---------~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~ 345 (487)
.+.+-+.-.+++++|++..|+..... +..+++++.. .+.++++.+|.+.. +-+.+...
T Consensus 195 ~~r~~~gl~~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~----------~~~~L~~~ 261 (382)
T PLN02605 195 ELRRELGMDEDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRNKK----------LQSKLESR 261 (382)
T ss_pred HHHHHcCCCCCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCCHH----------HHHHHHhh
Confidence 34433443345667777766655322 2223333322 23566777765431 11122222
Q ss_pred hcCCCcEeecccch-HhhhcccCccccccccCchhHHHHhhcCCcEeccCccccch-hhHHHHHHHhhceEeeccccccc
Q 046605 346 MEGKGLIIRGWAPQ-VLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQF-YNEKIVNEVLKIGIGVGIQKWCR 423 (487)
Q Consensus 346 ~~~~nv~~~~~vp~-~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~-~~a~rv~~~~G~G~~l~~~~~~~ 423 (487)
....++.+.+|+++ .+++..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..++ ..|.|+.+
T Consensus 262 ~~~~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~------- 331 (382)
T PLN02605 262 DWKIPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS------- 331 (382)
T ss_pred cccCCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec-------
Confidence 12356888999985 569999998 999999999999999999999998766675 7898884 88998753
Q ss_pred ccCCccCHHHHHHHHHHHhc
Q 046605 424 IVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 424 ~~~~~~~~~~l~~~i~~ll~ 443 (487)
-++++|.++|.++++
T Consensus 332 -----~~~~~la~~i~~ll~ 346 (382)
T PLN02605 332 -----ESPKEIARIVAEWFG 346 (382)
T ss_pred -----CCHHHHHHHHHHHHc
Confidence 278999999999997
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.47 E-value=4.1e-11 Score=118.21 Aligned_cols=142 Identities=17% Similarity=0.117 Sum_probs=96.5
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhc----CCcEEEEecCCCCCCCcccccccCchhHHHHhc-------------
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEAS----GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRME------------- 347 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~------------- 347 (487)
++++|.+--||-...-...+..+++++..+ +.++++.+.+.... + .+.....
T Consensus 204 ~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~---~--------~~~~~l~~~g~~~~~~~~~~ 272 (396)
T TIGR03492 204 GRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL---E--------KLQAILEDLGWQLEGSSEDQ 272 (396)
T ss_pred CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH---H--------HHHHHHHhcCceecCCcccc
Confidence 345888888888664344456666666654 56888887444321 1 1211111
Q ss_pred -----CCCcEeecccc-hHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHh----hceEeec
Q 046605 348 -----GKGLIIRGWAP-QVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVL----KIGIGVG 417 (487)
Q Consensus 348 -----~~nv~~~~~vp-~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~----G~G~~l~ 417 (487)
.+++.+..+.. ..+++..+++ +|+-.|..| .|+...|+|+|++|.-..|. |+... ++. |.++.+.
T Consensus 273 ~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~ 347 (396)
T TIGR03492 273 TSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA 347 (396)
T ss_pred chhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecC
Confidence 12355555554 4669999898 999999766 99999999999999777776 88777 464 7666664
Q ss_pred ccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHH
Q 046605 418 IQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAK 455 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~ 455 (487)
. .+.+.|.+++.++++ |++.++++.
T Consensus 348 ~----------~~~~~l~~~l~~ll~---d~~~~~~~~ 372 (396)
T TIGR03492 348 S----------KNPEQAAQVVRQLLA---DPELLERCR 372 (396)
T ss_pred C----------CCHHHHHHHHHHHHc---CHHHHHHHH
Confidence 3 455999999999998 666554444
No 44
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=2.2e-11 Score=108.14 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=109.0
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHh-cCCCcEeecccc-hHhhh
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM-EGKGLIIRGWAP-QVLIL 363 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~vp-~~~ll 363 (487)
..-|+|+||-.- +......++..+.+.++.+-.++++..+ .+++++... +.+|+.+.-... ...++
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p----------~l~~l~k~~~~~~~i~~~~~~~dma~LM 225 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNP----------TLKNLRKRAEKYPNINLYIDTNDMAELM 225 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCc----------chhHHHHHHhhCCCeeeEecchhHHHHH
Confidence 346999998543 3445677888888877777777775443 223344333 367888766666 56699
Q ss_pred cccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhc
Q 046605 364 DHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 364 ~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
..+++ .|+-||. |++|++.-|+|.+++|+...|--.|... +.+|+-..+.. .++.+.....+.++.+
T Consensus 226 ke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~---------~l~~~~~~~~~~~i~~ 292 (318)
T COG3980 226 KEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGY---------HLKDLAKDYEILQIQK 292 (318)
T ss_pred Hhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccC---------CCchHHHHHHHHHhhh
Confidence 99998 9998886 9999999999999999999999999999 68888877764 3778888888888887
Q ss_pred CchHHHHHHHHHHHHH
Q 046605 444 GDRAEEMRSRAKAFGE 459 (487)
Q Consensus 444 ~~~~~~~~~~a~~l~~ 459 (487)
|...|++...-++
T Consensus 293 ---d~~~rk~l~~~~~ 305 (318)
T COG3980 293 ---DYARRKNLSFGSK 305 (318)
T ss_pred ---CHHHhhhhhhccc
Confidence 6666666554443
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.39 E-value=2.6e-13 Score=114.08 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=80.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccch
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAIT 89 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 89 (487)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. +++|..++.+ ..... ...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~-------~~~~~--~~~ 62 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD-------SRLPR--SLE 62 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC-------GGGGH--HHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC-------cCcCc--ccc
Confidence 78999999999999999999999999999999999999998776 7889888632 00000 000
Q ss_pred hhhhHHHHHHHHH---HHHhhhHHHHHHH--------hhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHH
Q 046605 90 NEVNRELIVKFYM---ATTKLQKPLEQLL--------QEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFF 152 (487)
Q Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~l~~~l--------~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 152 (487)
. ......... ......+.+.+.. ....+|+++.+.....+..+|+.+|||++.....+.+
T Consensus 63 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 63 P---LANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp H---HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred h---hhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 0 011111111 1111122222211 1246888888987778999999999999998776544
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.31 E-value=1.4e-08 Score=103.34 Aligned_cols=131 Identities=19% Similarity=0.202 Sum_probs=85.0
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHHhc-CCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHh---hh
Q 046605 288 VVYICFGSVANFTSAQLMEIAMGLEAS-GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVL---IL 363 (487)
Q Consensus 288 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~---ll 363 (487)
.+++..|+... .+.+..++++++.. +.+++++ |.+. .-+.++...+..++.+.+++++.+ ++
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~iv-G~G~-----------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~ 329 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFV-GDGP-----------YREELEKMFAGTPTVFTGMLQGDELSQAY 329 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEE-eCCh-----------HHHHHHHHhccCCeEEeccCCHHHHHHHH
Confidence 45566687653 44566677788776 4555544 4332 112333333456899999998544 77
Q ss_pred cccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHH---hhceEeecccccccccCCccCHHHHHH
Q 046605 364 DHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEV---LKIGIGVGIQKWCRIVGDFVKREAIVK 436 (487)
Q Consensus 364 ~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~---~G~G~~l~~~~~~~~~~~~~~~~~l~~ 436 (487)
..+++ +|.- |-..++.||+++|+|+|+.... .....+ +. -+.|..+.. -+.+++.+
T Consensus 330 ~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~----------~d~~~la~ 392 (465)
T PLN02871 330 ASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTP----------GDVDDCVE 392 (465)
T ss_pred HHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCC----------CCHHHHHH
Confidence 77888 6633 2244789999999999976532 334444 45 577877764 37899999
Q ss_pred HHHHHhcCchHHHHHH
Q 046605 437 AVNEIMMGDRAEEMRS 452 (487)
Q Consensus 437 ~i~~ll~~~~~~~~~~ 452 (487)
+|.++++ |++.++
T Consensus 393 ~i~~ll~---~~~~~~ 405 (465)
T PLN02871 393 KLETLLA---DPELRE 405 (465)
T ss_pred HHHHHHh---CHHHHH
Confidence 9999997 554443
No 47
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.27 E-value=1.6e-08 Score=99.13 Aligned_cols=110 Identities=22% Similarity=0.185 Sum_probs=75.0
Q ss_pred CCCcEeecccchHh---hhcccCccccccccC----chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFVTHCG----WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
.+|+.+.+|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+ +..+.|.....
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i-~~~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIV-TDGENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhh-cCCcceEEcCC--
Confidence 57899999998654 7888887 775543 47899999999999987744 345566 46688887754
Q ss_pred cccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIED 481 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 481 (487)
.+.+++.++|.++++ +++.+++..+-+.... +..+.....+.+++.
T Consensus 317 --------~~~~~l~~~i~~l~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 362 (364)
T cd03814 317 --------GDAEAFAAALAALLA---DPELRRRMAARARAEA----ERRSWEAFLDNLLEA 362 (364)
T ss_pred --------CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHHH----hhcCHHHHHHHHHHh
Confidence 477889999999998 5555544433332222 224444545555443
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.20 E-value=3.2e-08 Score=96.71 Aligned_cols=129 Identities=14% Similarity=0.058 Sum_probs=80.9
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhc---CCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHh
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEAS---GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVL 361 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ 361 (487)
.++.+++..|+... .+....+++++..+ +.++++.-.+.... .........+++.+.+++++.+
T Consensus 189 ~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~-----------~~~~~~~~~~~v~~~g~~~~~~ 255 (359)
T cd03823 189 GGRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIVGNGLELE-----------EESYELEGDPRVEFLGAYPQEE 255 (359)
T ss_pred CCceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEEcCchhhh-----------HHHHhhcCCCeEEEeCCCCHHH
Confidence 34467777887654 23344455555443 45555443332210 0000001247899999997544
Q ss_pred ---hhcccCcccccc----ccC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHH
Q 046605 362 ---ILDHEAVGGFVT----HCG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREA 433 (487)
Q Consensus 362 ---ll~~~~~~~~I~----HGG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~ 433 (487)
++..+++ +|+ ..| ..++.||+++|+|+|+-+. ......+ +..+.|...... +.++
T Consensus 256 ~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~----------d~~~ 318 (359)
T cd03823 256 IDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPPG----------DAED 318 (359)
T ss_pred HHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECCC----------CHHH
Confidence 6888887 552 233 4479999999999998653 4456666 455578777643 6899
Q ss_pred HHHHHHHHhc
Q 046605 434 IVKAVNEIMM 443 (487)
Q Consensus 434 l~~~i~~ll~ 443 (487)
+.+++.++++
T Consensus 319 l~~~i~~l~~ 328 (359)
T cd03823 319 LAAALERLID 328 (359)
T ss_pred HHHHHHHHHh
Confidence 9999999998
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.17 E-value=5.4e-08 Score=94.79 Aligned_cols=141 Identities=20% Similarity=0.164 Sum_probs=82.6
Q ss_pred CCcEEEEeccCcccC-CHHHHHHHHHHHHh--cCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccch-H
Q 046605 285 PNSVVYICFGSVANF-TSAQLMEIAMGLEA--SGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQ-V 360 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~-~ 360 (487)
+++.+++..|+.... ..+.+...+..+.+ .+.++++.-.+.... .... ..+......+++.+.++..+ .
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~----~~~~---~~~~~~~~~~~v~~~g~~~~~~ 258 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEEN----PAAI---LEIEKLGLEGRVEFLGFRDDVP 258 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcch----hhHH---HHHHhcCCcceEEEeeccccHH
Confidence 345788888887642 23333444444432 234544443332211 1000 00111112467888777553 5
Q ss_pred hhhcccCcccccccc----CchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHH
Q 046605 361 LILDHEAVGGFVTHC----GWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVK 436 (487)
Q Consensus 361 ~ll~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~ 436 (487)
.++..+++ +|.-. -.+++.||+.+|+|+|+-+.. .....+ +..+.|...+. -+.+++.+
T Consensus 259 ~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i-~~~~~g~~~~~----------~~~~~~~~ 321 (359)
T cd03808 259 ELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV-IDGVNGFLVPP----------GDAEALAD 321 (359)
T ss_pred HHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh-hcCcceEEECC----------CCHHHHHH
Confidence 58888887 66433 367899999999999986543 344555 45677877653 47899999
Q ss_pred HHHHHhcCchHHHHHH
Q 046605 437 AVNEIMMGDRAEEMRS 452 (487)
Q Consensus 437 ~i~~ll~~~~~~~~~~ 452 (487)
+|.++++ +++..+
T Consensus 322 ~i~~l~~---~~~~~~ 334 (359)
T cd03808 322 AIERLIE---DPELRA 334 (359)
T ss_pred HHHHHHh---CHHHHH
Confidence 9999987 444443
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.15 E-value=4.7e-08 Score=96.46 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=83.0
Q ss_pred CcEEEEeccCccc-CCHHHHHHHHHHHHhc-CCcEEEEecCCCCCCCcccccccCchhHHH---HhcCCCcEeecccchH
Q 046605 286 NSVVYICFGSVAN-FTSAQLMEIAMGLEAS-GQNFIWVVRKNKNNGGEEEKEDWLPEGFEK---RMEGKGLIIRGWAPQV 360 (487)
Q Consensus 286 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~nv~~~~~vp~~ 360 (487)
++.+++..|+... ...+.+...+..+... +.++++. |.... .+.+.. ....+|+.+..++++.
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~~-----------~~~~~~~~~~~~~~~v~~~g~~~~~ 286 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGPE-----------KEELKELAKALGLDNVTFLGRVPKE 286 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCccc-----------HHHHHHHHHHcCCCcEEEeCCCChH
Confidence 4467777887764 2233344444444333 4455443 33221 112221 2335789999999865
Q ss_pred h---hhcccCccccccccC---------chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCc
Q 046605 361 L---ILDHEAVGGFVTHCG---------WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDF 428 (487)
Q Consensus 361 ~---ll~~~~~~~~I~HGG---------~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~ 428 (487)
+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ ...+.|..+..
T Consensus 287 ~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~~---------- 349 (394)
T cd03794 287 ELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVPP---------- 349 (394)
T ss_pred HHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeCC----------
Confidence 4 6777887 553222 234799999999999988665443 33 24466776654
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHH
Q 046605 429 VKREAIVKAVNEIMMGDRAEEMRSRA 454 (487)
Q Consensus 429 ~~~~~l~~~i~~ll~~~~~~~~~~~a 454 (487)
-+.+++.++|.++++ +++.+++.
T Consensus 350 ~~~~~l~~~i~~~~~---~~~~~~~~ 372 (394)
T cd03794 350 GDPEALAAAILELLD---DPEERAEM 372 (394)
T ss_pred CCHHHHHHHHHHHHh---ChHHHHHH
Confidence 378999999999997 44544433
No 51
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.15 E-value=7.3e-08 Score=96.49 Aligned_cols=121 Identities=10% Similarity=-0.026 Sum_probs=72.0
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
++.||++++..-.|+-..+..+|++|+++||+|++++........+.. .+.++.++.++... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~------~~~~v~~~~~~~~~------~~~~~- 68 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL------SNPNITIHPLPPPP------QRLNK- 68 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh------cCCCEEEEECCCCc------ccccc-
Confidence 567888888888888888899999999999999999875432111101 13367777764210 00111
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc-----chHHHHHHhCCCeEEE
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP-----WATDAAAKFGIPRLVF 146 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~-----~~~~~A~~~giP~v~~ 146 (487)
. ...+.............+..+++..+||+|++..... .+..++...++|+|..
T Consensus 69 --~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~ 127 (415)
T cd03816 69 --L-----PFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIID 127 (415)
T ss_pred --c-----hHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEE
Confidence 0 1222222222222333444456667899999754221 2444566779998764
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.14 E-value=4.6e-08 Score=96.51 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=78.0
Q ss_pred cEEEEeccCcccCCHHHHHHHHHHHHh----cCCcEEEEecCCCCCCCcccccccCchhHHHHhc-CCCcEeecccch-H
Q 046605 287 SVVYICFGSVANFTSAQLMEIAMGLEA----SGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRME-GKGLIIRGWAPQ-V 360 (487)
Q Consensus 287 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~----~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~vp~-~ 360 (487)
..+++.+|.... .+.+..++++++. .+.++++.-.+... +.+. .+..+.. .+++.+.++.++ .
T Consensus 197 ~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~----~~~~-----~~~~~~~~~~~v~~~g~~~~~~ 265 (371)
T cd04962 197 EKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLVGDGPER----SPAE-----RLARELGLQDDVLFLGKQDHVE 265 (371)
T ss_pred CeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEEcCCcCH----HHHH-----HHHHHcCCCceEEEecCcccHH
Confidence 366777777664 3334444444432 35566555433221 1111 1111111 356888888775 5
Q ss_pred hhhcccCccccc----cccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHH
Q 046605 361 LILDHEAVGGFV----THCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVK 436 (487)
Q Consensus 361 ~ll~~~~~~~~I----~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~ 436 (487)
+++..+++ +| +-|...++.||+.+|+|+|+-. ....+..+ +.-..|...+. -+.+++.+
T Consensus 266 ~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i-~~~~~G~~~~~----------~~~~~l~~ 328 (371)
T cd04962 266 ELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVV-KHGETGFLVDV----------GDVEAMAE 328 (371)
T ss_pred HHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhh-cCCCceEEcCC----------CCHHHHHH
Confidence 58888887 55 2244559999999999999854 34455555 35456766543 47899999
Q ss_pred HHHHHhc
Q 046605 437 AVNEIMM 443 (487)
Q Consensus 437 ~i~~ll~ 443 (487)
++.++++
T Consensus 329 ~i~~l~~ 335 (371)
T cd04962 329 YALSLLE 335 (371)
T ss_pred HHHHHHh
Confidence 9999997
No 53
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.09 E-value=1.6e-07 Score=93.65 Aligned_cols=132 Identities=16% Similarity=0.112 Sum_probs=82.6
Q ss_pred cEEEEeccCcccCCHHHHHHHHHHHHhc-----CCcEEEEecCCCCCCCcccccccCchh---HHHHh-cCCCcEeeccc
Q 046605 287 SVVYICFGSVANFTSAQLMEIAMGLEAS-----GQNFIWVVRKNKNNGGEEEKEDWLPEG---FEKRM-EGKGLIIRGWA 357 (487)
Q Consensus 287 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~---~~~~~-~~~nv~~~~~v 357 (487)
..+++..|+... ......+++++..+ +.++++..++.... ... .... +.... ..+|+.+.+++
T Consensus 220 ~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~-----~~~-~~~~~~~~~~~~~~~~~v~~~g~~ 291 (398)
T cd03800 220 KPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRDDI-----LAM-DEEELRELARELGVIDRVDFPGRV 291 (398)
T ss_pred CcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcc-----hhh-hhHHHHHHHHhcCCCceEEEeccC
Confidence 366777787664 23344455555443 45666665444321 000 0001 11111 14689999999
Q ss_pred chHh---hhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccC
Q 046605 358 PQVL---ILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVK 430 (487)
Q Consensus 358 p~~~---ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~ 430 (487)
|+.+ ++..+++ +++. |-..++.||+++|+|+|+-... .....+ +..+.|...+. -+
T Consensus 292 ~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~~----------~~ 354 (398)
T cd03800 292 SREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVDP----------RD 354 (398)
T ss_pred CHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeCC----------CC
Confidence 9755 5777887 6633 3345899999999999976543 345556 56678887754 47
Q ss_pred HHHHHHHHHHHhc
Q 046605 431 REAIVKAVNEIMM 443 (487)
Q Consensus 431 ~~~l~~~i~~ll~ 443 (487)
.+++.++|.++++
T Consensus 355 ~~~l~~~i~~l~~ 367 (398)
T cd03800 355 PEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999997
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.07 E-value=4.2e-07 Score=89.17 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=58.6
Q ss_pred CCCcEeecccchHh---hhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
.+|+.+.+++|+.+ ++..+++ +|.- |...++.||+++|+|+|+.. ....+..+ +..+.|..+...
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhhe-ecCceeEEeCCC-
Confidence 46899999998654 6778887 5532 34578999999999999865 34455666 466788888654
Q ss_pred cccccCCccCHHHHHHHHHHHhc
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
+ . ++.+++.++++
T Consensus 330 -------~--~-~~~~~i~~l~~ 342 (374)
T cd03817 330 -------D--E-ALAEALLRLLQ 342 (374)
T ss_pred -------C--H-HHHHHHHHHHh
Confidence 2 2 89999999997
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.06 E-value=2.9e-07 Score=92.35 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=90.8
Q ss_pred cEEEEeccCcccCCHHHHHHHHHHHHhc----CCcEEEEecCCCCCCCcccccccCchhHH---HHhcCCCcEeecccch
Q 046605 287 SVVYICFGSVANFTSAQLMEIAMGLEAS----GQNFIWVVRKNKNNGGEEEKEDWLPEGFE---KRMEGKGLIIRGWAPQ 359 (487)
Q Consensus 287 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~---~~~~~~nv~~~~~vp~ 359 (487)
..+++..|+... .+.+..++++++.+ +.+++. +|.... .+.++ ....-+|+.+.+|+|+
T Consensus 229 ~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~i-vG~g~~-----------~~~l~~~~~~~~l~~v~f~G~~~~ 294 (412)
T PRK10307 229 KKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFVI-CGQGGG-----------KARLEKMAQCRGLPNVHFLPLQPY 294 (412)
T ss_pred CEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEEE-ECCChh-----------HHHHHHHHHHcCCCceEEeCCCCH
Confidence 356666787763 34455566666544 234433 333221 12222 2222358999999986
Q ss_pred Hh---hhcccCccccccccCc------hhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccC
Q 046605 360 VL---ILDHEAVGGFVTHCGW------NSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVK 430 (487)
Q Consensus 360 ~~---ll~~~~~~~~I~HGG~------gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~ 430 (487)
.+ ++..+++-++.+..+. +.+.|++.+|+|+|+....+. .....+ + +.|+.+.. -+
T Consensus 295 ~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~----------~d 359 (412)
T PRK10307 295 DRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEP----------ES 359 (412)
T ss_pred HHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCC----------CC
Confidence 44 6888887444444332 236899999999999764331 122334 3 78887764 47
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 046605 431 REAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDL 482 (487)
Q Consensus 431 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l 482 (487)
.++|.++|.++++ ++..+++ +++..++.+++.-+....+..+++.+
T Consensus 360 ~~~la~~i~~l~~---~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~~ 405 (412)
T PRK10307 360 VEALVAAIAALAR---QALLRPK---LGTVAREYAERTLDKENVLRQFIADI 405 (412)
T ss_pred HHHHHHHHHHHHh---CHHHHHH---HHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 8999999999997 4433322 22222222233344444445554444
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.06 E-value=4.8e-07 Score=88.27 Aligned_cols=85 Identities=26% Similarity=0.300 Sum_probs=63.8
Q ss_pred CCCcEeecccch---HhhhcccCcccccc----ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQ---VLILDHEAVGGFVT----HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~---~~ll~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
.+++.+.+++++ ..++..+++ +|. -|..+++.||+++|+|+|+.+. ...+..+ +..+.|.....
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeCC--
Confidence 578999999974 347878887 553 3557799999999999998665 4456666 46677877754
Q ss_pred cccccCCccCHHHHHHHHHHHhcCchHHHHHH
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMMGDRAEEMRS 452 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 452 (487)
.+.+++.++|.++++ ++..++
T Consensus 326 --------~~~~~l~~~i~~~~~---~~~~~~ 346 (374)
T cd03801 326 --------GDPEALAEAILRLLD---DPELRR 346 (374)
T ss_pred --------CCHHHHHHHHHHHHc---ChHHHH
Confidence 469999999999997 554443
No 57
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.05 E-value=2.6e-07 Score=92.12 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=58.1
Q ss_pred CCCcEeecccchHh---hhcccCcccccc-ccC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccc
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFVT-HCG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWC 422 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I~-HGG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 422 (487)
.++|.+.+++|+.+ ++..+++-++.+ +.| ..++.||+++|+|+|+-. .......+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcCC----
Confidence 46899999999755 567778732222 223 348999999999999854 44555556 34456776654
Q ss_pred cccCCccCHHHHHHHHHHHhc
Q 046605 423 RIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 423 ~~~~~~~~~~~l~~~i~~ll~ 443 (487)
-+++++.++|.++++
T Consensus 351 ------~d~~~la~~i~~ll~ 365 (396)
T cd03818 351 ------FDPDALAAAVIELLD 365 (396)
T ss_pred ------CCHHHHHHHHHHHHh
Confidence 479999999999998
No 58
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.98 E-value=6.6e-07 Score=85.23 Aligned_cols=298 Identities=20% Similarity=0.230 Sum_probs=160.0
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccccc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDA 87 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~ 87 (487)
|||.|--.- .-|+.-+.++.++|.++||+|.+.+-+.. .+...+.. .++++..+.- .+ .+
T Consensus 1 MkIwiDi~~-p~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~-----yg~~y~~iG~--------~g-~~--- 60 (335)
T PF04007_consen 1 MKIWIDITH-PAHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL-----YGIDYIVIGK--------HG-DS--- 60 (335)
T ss_pred CeEEEECCC-chHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH-----cCCCeEEEcC--------CC-CC---
Confidence 456554322 33999999999999999999999887643 22332221 2677777741 11 11
Q ss_pred chhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEechhHHHHHHHHHhhhhcCCC
Q 046605 88 ITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPHK 167 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
....+.... .....+.+++++++||++|+- .++.+..+|..+|+|+|.+.-......
T Consensus 61 --------~~~Kl~~~~-~R~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~------------- 117 (335)
T PF04007_consen 61 --------LYGKLLESI-ERQYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIA------------- 117 (335)
T ss_pred --------HHHHHHHHH-HHHHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhc-------------
Confidence 111111111 123467777888999999975 445677799999999999864321111
Q ss_pred CCCCCCCccccCCCCCCcccccCC---CCCCcCCCCCCchHH-HHHHHhhhcccCccEEE-EcchhhhcHHHHHHHHHHh
Q 046605 168 KVSSDSEPFVMPNLPGEIKLTRNQ---LPDPAKQDMGDNDFS-RFMKASDDSDLRSYGVV-VNSFYELEHAYADHYRKAL 242 (487)
Q Consensus 168 ~~~~~~~~~~~P~~~~~~~~~~~~---l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~s~~~l~~~~~~~~~~~~ 242 (487)
.+++++++.+ .|.. +. .++.++.. + ..+. .+.+.++.
T Consensus 118 --------------~~~Lt~Pla~~i~~P~~---------~~~~~~~~~G~---~-~~i~~y~G~~E~a----------- 159 (335)
T PF04007_consen 118 --------------QNRLTLPLADVIITPEA---------IPKEFLKRFGA---K-NQIRTYNGYKELA----------- 159 (335)
T ss_pred --------------cceeehhcCCeeECCcc---------cCHHHHHhcCC---c-CCEEEECCeeeEE-----------
Confidence 0111111111 0111 10 01111110 0 1111 22222111
Q ss_pred CCceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCccc----CCHHHHHHHHHHHHhcCCcE
Q 046605 243 GRRAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVAN----FTSAQLMEIAMGLEASGQNF 318 (487)
Q Consensus 243 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~a~~~~~~~~ 318 (487)
++=|+ . ++.++.+-+.. ++.+.|++-+-+..+ .....+..+++.+++.+..+
T Consensus 160 -----yl~~F-~-----------------Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~v 215 (335)
T PF04007_consen 160 -----YLHPF-K-----------------PDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNV 215 (335)
T ss_pred -----eecCC-C-----------------CChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceE
Confidence 12121 1 12333334442 245677777766443 23455778889999888774
Q ss_pred EEEecCCCCCCCcccccccCchhHHHHhcCCCcEe-ecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccc
Q 046605 319 IWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLII-RGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYA 397 (487)
Q Consensus 319 i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~-~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~ 397 (487)
|.......+ ++.++ .-++.+ ..-+...++|.++++ +|+-|| ....||...|+|.|.+ +.+
T Consensus 216 V~ipr~~~~-----------~~~~~----~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g 276 (335)
T PF04007_consen 216 VIIPRYEDQ-----------RELFE----KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPG 276 (335)
T ss_pred EEecCCcch-----------hhHHh----ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCC
Confidence 444333321 11111 112333 344555689999998 998777 7899999999999974 223
Q ss_pred cchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHh
Q 046605 398 EQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIM 442 (487)
Q Consensus 398 DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll 442 (487)
+-...-+.+. +.|. +.. ..+.+++.+.+.+.+
T Consensus 277 ~~~~vd~~L~-~~Gl---l~~---------~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 277 KLLAVDKYLI-EKGL---LYH---------STDPDEIVEYVRKNL 308 (335)
T ss_pred cchhHHHHHH-HCCC---eEe---------cCCHHHHHHHHHHhh
Confidence 3223334453 5554 222 357778877665544
No 59
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.98 E-value=5.8e-07 Score=90.48 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=60.3
Q ss_pred cEeecccch-HhhhcccCcccccc-----ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccc
Q 046605 351 LIIRGWAPQ-VLILDHEAVGGFVT-----HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRI 424 (487)
Q Consensus 351 v~~~~~vp~-~~ll~~~~~~~~I~-----HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~ 424 (487)
+.+.+...+ ..+++.+++ ++. -||..++.||+++|+|+|+-|...++......+ ...|+++..
T Consensus 304 v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~-------- 372 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV-------- 372 (425)
T ss_pred EEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE--------
Confidence 444443333 457777886 332 134456999999999999999988888887777 466655542
Q ss_pred cCCccCHHHHHHHHHHHhcCchHHHHHHHH
Q 046605 425 VGDFVKREAIVKAVNEIMMGDRAEEMRSRA 454 (487)
Q Consensus 425 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a 454 (487)
-+.++|.++|.++++ |++.+++.
T Consensus 373 ----~d~~~La~~l~~ll~---~~~~~~~m 395 (425)
T PRK05749 373 ----EDAEDLAKAVTYLLT---DPDARQAY 395 (425)
T ss_pred ----CCHHHHHHHHHHHhc---CHHHHHHH
Confidence 267999999999998 55554433
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.97 E-value=1.8e-06 Score=84.46 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=80.6
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHhc---CCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchH--
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEAS---GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQV-- 360 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~---~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~-- 360 (487)
+..+++..|+... .+....++++++.+ +.++.+.+.+..... +. +-+........+|+.+.+++++.
T Consensus 201 ~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~--~~----~~~~~~~~~~~~~v~~~g~~~~~~~ 272 (377)
T cd03798 201 DKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDGPLR--EA----LEALAAELGLEDRVTFLGAVPHEEV 272 (377)
T ss_pred CceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch--HH----HHHHHHhcCCcceEEEeCCCCHHHH
Confidence 3467777787664 22344444444433 224444444433210 11 10011101125789999999864
Q ss_pred -hhhcccCccccc----cccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHH
Q 046605 361 -LILDHEAVGGFV----THCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIV 435 (487)
Q Consensus 361 -~ll~~~~~~~~I----~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~ 435 (487)
.++..+++ +| +-|..+++.||+++|+|+|+-+. ......+ +..+.|..... -+.+++.
T Consensus 273 ~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~-~~~~~g~~~~~----------~~~~~l~ 335 (377)
T cd03798 273 PAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEII-TDGENGLLVPP----------GDPEALA 335 (377)
T ss_pred HHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHh-cCCcceeEECC----------CCHHHHH
Confidence 46777777 54 23556789999999999998654 3345556 46666776653 5899999
Q ss_pred HHHHHHhc
Q 046605 436 KAVNEIMM 443 (487)
Q Consensus 436 ~~i~~ll~ 443 (487)
++|.++++
T Consensus 336 ~~i~~~~~ 343 (377)
T cd03798 336 EAILRLLA 343 (377)
T ss_pred HHHHHHhc
Confidence 99999998
No 61
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.94 E-value=1.8e-07 Score=89.89 Aligned_cols=168 Identities=17% Similarity=0.125 Sum_probs=98.2
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHhcCCc-EEEEecCCCCCCCcccccccCchhHHHHhc-CCCcEeecccchHhhh
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEASGQN-FIWVVRKNKNNGGEEEKEDWLPEGFEKRME-GKGLIIRGWAPQVLIL 363 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~vp~~~ll 363 (487)
+++|.+--||-.+.-...+..++++...+..+ .++.+..... . +.+.+... ...+.+.+ ...+++
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~----------~-~~i~~~~~~~~~~~~~~--~~~~~m 233 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK----------G-KDLKEIYGDISEFEISY--DTHKAL 233 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc----------H-HHHHHHHhcCCCcEEec--cHHHHH
Confidence 35899999998874446666666666654322 2333333221 1 12222111 12333332 345688
Q ss_pred cccCccccccccCchhHHHHhhcCCcEeccCcc--ccchhhHHHHHH---HhhceEeecc----cccccc-cCCccCHHH
Q 046605 364 DHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVY--AEQFYNEKIVNE---VLKIGIGVGI----QKWCRI-VGDFVKREA 433 (487)
Q Consensus 364 ~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~--~DQ~~~a~rv~~---~~G~G~~l~~----~~~~~~-~~~~~~~~~ 433 (487)
..+++ +|+-.|..|. |+..+|+|+|+ ++- .-|+.+|+++ . ..|+.--+.. ..--.| .+.+.|++.
T Consensus 234 ~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~ 308 (347)
T PRK14089 234 LEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELLQEFVTVEN 308 (347)
T ss_pred HhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhhcccCCHHH
Confidence 88888 9999999998 99999999998 543 4688899998 4 3343332311 000000 123789999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 046605 434 IVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIED 481 (487)
Q Consensus 434 l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 481 (487)
|.+++.+ .+ ...+++...++++.+. . |++ ..+++.|.+
T Consensus 309 la~~i~~-~~---~~~~~~~~~~l~~~l~----~-~a~-~~~A~~i~~ 346 (347)
T PRK14089 309 LLKAYKE-MD---REKFFKKSKELREYLK----H-GSA-KNVAKILKE 346 (347)
T ss_pred HHHHHHH-HH---HHHHHHHHHHHHHHhc----C-CHH-HHHHHHHhc
Confidence 9999987 32 4566666666666554 3 333 334555543
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.93 E-value=1.1e-06 Score=85.21 Aligned_cols=91 Identities=21% Similarity=0.228 Sum_probs=62.3
Q ss_pred CCCcEeecccc-hHhhhcccCcccccccc----CchhHHHHhhcCCcEeccCccccchhhHHHHHHHhh-ceEeeccccc
Q 046605 348 GKGLIIRGWAP-QVLILDHEAVGGFVTHC----GWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLK-IGIGVGIQKW 421 (487)
Q Consensus 348 ~~nv~~~~~vp-~~~ll~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G-~G~~l~~~~~ 421 (487)
.+++.+.++.. -..++..+++ +|.-. ...++.||+++|+|+|+-+....+ ..+. ..| .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~-~~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEII-EDGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhh-ccCcceEEeCC---
Confidence 45677777744 3568888887 55443 256899999999999986544433 2342 444 7777753
Q ss_pred ccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 046605 422 CRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFG 458 (487)
Q Consensus 422 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 458 (487)
.+.+++.++|.++++ |++.++++.+-+
T Consensus 304 -------~~~~~~~~~i~~ll~---~~~~~~~~~~~~ 330 (348)
T cd03820 304 -------GDVEALAEALLRLME---DEELRKRMGANA 330 (348)
T ss_pred -------CCHHHHHHHHHHHHc---CHHHHHHHHHHH
Confidence 478999999999998 666555544443
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.87 E-value=1.7e-06 Score=84.63 Aligned_cols=128 Identities=14% Similarity=0.094 Sum_probs=82.5
Q ss_pred cEEEEeccCcccCCHHHHHHHHHHHHhcC-CcEEEEecCCCCCCCcccccccCchhHHH----HhcCCCcEeecccchH-
Q 046605 287 SVVYICFGSVANFTSAQLMEIAMGLEASG-QNFIWVVRKNKNNGGEEEKEDWLPEGFEK----RMEGKGLIIRGWAPQV- 360 (487)
Q Consensus 287 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~lp~~~~~----~~~~~nv~~~~~vp~~- 360 (487)
..+++..|+... .+....+++++.++. .++++.-.+.. .+.+.+ ....+||.+.+|+|+.
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~~V~~~g~v~~~~ 256 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGPL------------EAELEALAAALGLLDRVRFLGRLDDEE 256 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCChh------------HHHHHHHHHhcCCcceEEEcCCCCHHH
Confidence 356777787653 345666777777776 44444433221 112221 1225789999999974
Q ss_pred --hhhcccCcccccc---ccCc-hhHHHHhhcCCcEeccCccccchhhHHHHHHH-hhceEeecccccccccCCccCHHH
Q 046605 361 --LILDHEAVGGFVT---HCGW-NSILEGVTAGVPLVTWPVYAEQFYNEKIVNEV-LKIGIGVGIQKWCRIVGDFVKREA 433 (487)
Q Consensus 361 --~ll~~~~~~~~I~---HGG~-gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~-~G~G~~l~~~~~~~~~~~~~~~~~ 433 (487)
.++..+++-++.+ +.|. .++.||+++|+|+|+-...+.. ..+ +. .+.|..... -+.++
T Consensus 257 ~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i-~~~~~~g~~~~~----------~d~~~ 321 (357)
T cd03795 257 KAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYV-NLHGVTGLVVPP----------GDPAA 321 (357)
T ss_pred HHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHH-hhCCCceEEeCC----------CCHHH
Confidence 4777788733333 2343 4799999999999986544433 344 33 567777653 48999
Q ss_pred HHHHHHHHhc
Q 046605 434 IVKAVNEIMM 443 (487)
Q Consensus 434 l~~~i~~ll~ 443 (487)
+.++|.++++
T Consensus 322 ~~~~i~~l~~ 331 (357)
T cd03795 322 LAEAIRRLLE 331 (357)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 64
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.86 E-value=1.2e-07 Score=93.39 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=85.2
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHhc-----CCcEEEEecCCCCCCCcccccccCchhHHHHh-cCCCcEeecccch
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEAS-----GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM-EGKGLIIRGWAPQ 359 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~vp~ 359 (487)
++.|+++++-.... .+.+..+++++..+ +.++++...++.. .-+.+.+.. ..+++.+.+.+++
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~ 265 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV----------VREPLHKHLGDSKRVHLIEPLEY 265 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH----------HHHHHHHHhCCCCCEEEECCCCh
Confidence 34676665432211 14467777777654 4556655433221 111122211 2367888876664
Q ss_pred ---HhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHH
Q 046605 360 ---VLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVK 436 (487)
Q Consensus 360 ---~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~ 436 (487)
..++.++++ +|+-.|. .+.||+++|+|+|.++..++++. +. ..|.|+.+. .++++|.+
T Consensus 266 ~~~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~-~~g~~~lv~-----------~d~~~i~~ 326 (365)
T TIGR00236 266 LDFLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TV-EAGTNKLVG-----------TDKENITK 326 (365)
T ss_pred HHHHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HH-hcCceEEeC-----------CCHHHHHH
Confidence 456777776 8887664 47999999999999976666552 32 457666542 37899999
Q ss_pred HHHHHhcCchHHHHHHHHH
Q 046605 437 AVNEIMMGDRAEEMRSRAK 455 (487)
Q Consensus 437 ~i~~ll~~~~~~~~~~~a~ 455 (487)
++.++++ ++..+++..
T Consensus 327 ai~~ll~---~~~~~~~~~ 342 (365)
T TIGR00236 327 AAKRLLT---DPDEYKKMS 342 (365)
T ss_pred HHHHHHh---ChHHHHHhh
Confidence 9999998 666665544
No 65
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.85 E-value=4.4e-06 Score=82.02 Aligned_cols=112 Identities=21% Similarity=0.174 Sum_probs=70.4
Q ss_pred CCCcEeecccc-hH---hhhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeeccc
Q 046605 348 GKGLIIRGWAP-QV---LILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQ 419 (487)
Q Consensus 348 ~~nv~~~~~vp-~~---~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~ 419 (487)
..++...+|++ +. .++..+++ +|.- |...++.||+++|+|+|+... ......+ +..+.|..+..
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhhe-eCCCceEEeCC-
Confidence 45688889998 43 46888887 6653 446799999999999997653 2333445 34456766543
Q ss_pred ccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 046605 420 KWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDL 482 (487)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l 482 (487)
.+.+++.+++.++++ +++.++ ++++..++..++.-+.+...+++++-+
T Consensus 315 ---------~~~~~~~~~l~~l~~---~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 315 ---------GDPEDLAEGIEWLLA---DPDERE---ELGEAARELAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred ---------CCHHHHHHHHHHHHh---CHHHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 478999999999997 444332 222333322233444445455555444
No 66
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.82 E-value=6.3e-06 Score=82.00 Aligned_cols=78 Identities=15% Similarity=0.034 Sum_probs=56.0
Q ss_pred CCCcEeecccchH---hhhcccCcccccc----ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQV---LILDHEAVGGFVT----HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~~---~ll~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
.++|.+.+++|+. .++..+++ ++. -|-..++.||+++|+|+|+.-. ......+ ..-+.|....
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHh-ccCCceEEeC---
Confidence 4789999999975 46777887 542 1223578999999999998643 3334455 3545676652
Q ss_pred cccccCCccCHHHHHHHHHHHhc
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
. +.+++.++|.++++
T Consensus 349 -------~-~~~~~a~~i~~l~~ 363 (392)
T cd03805 349 -------P-TPEEFAEAMLKLAN 363 (392)
T ss_pred -------C-CHHHHHHHHHHHHh
Confidence 2 78999999999998
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.81 E-value=1e-05 Score=79.19 Aligned_cols=79 Identities=16% Similarity=0.117 Sum_probs=56.7
Q ss_pred CCCcEeecccchHh---hhcccCccccccc--cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccc
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFVTH--CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWC 422 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 422 (487)
.+++.+.+|+++.+ ++..+++-++-++ |-..++.||+++|+|+|+-+ .......+ +. +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~~~~-~~-~~~~~~~~---- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTD----KVPWQELI-EY-GCGWVVDD---- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcC----CCCHHHHh-hc-CceEEeCC----
Confidence 57899999999544 5777887222222 23568999999999999865 34455556 35 77766643
Q ss_pred cccCCccCHHHHHHHHHHHhc
Q 046605 423 RIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 423 ~~~~~~~~~~~l~~~i~~ll~ 443 (487)
+.+++.++|.++++
T Consensus 331 -------~~~~~~~~i~~l~~ 344 (375)
T cd03821 331 -------DVDALAAALRRALE 344 (375)
T ss_pred -------ChHHHHHHHHHHHh
Confidence 34999999999998
No 68
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.79 E-value=3e-06 Score=83.27 Aligned_cols=149 Identities=14% Similarity=0.221 Sum_probs=85.5
Q ss_pred cEEEEeccCcccCCHHHHHHHHHHHHhcC--CcEEEEecCCCCCCCcccccccCchhHHHHh-cCCCcEeecccch----
Q 046605 287 SVVYICFGSVANFTSAQLMEIAMGLEASG--QNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM-EGKGLIIRGWAPQ---- 359 (487)
Q Consensus 287 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~vp~---- 359 (487)
+.+++..|.......+.+..+++++..+. .++++ +|..... +. + ..+.++. ..+++.+.+|+++
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~~~---~~----l-~~~~~~~~l~~~v~f~G~~~~~~~~ 250 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGSDF---EK----C-KAYSRELGIEQRIIWHGWQSQPWEV 250 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCccH---HH----H-HHHHHHcCCCCeEEEecccCCcHHH
Confidence 35667778765333445667777777653 34333 3333211 11 1 1111111 2468999998753
Q ss_pred -HhhhcccCcccccc--c--cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHH
Q 046605 360 -VLILDHEAVGGFVT--H--CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAI 434 (487)
Q Consensus 360 -~~ll~~~~~~~~I~--H--GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l 434 (487)
.+.+..+++ +|. + |-..++.||+++|+|+|+.-.. ......+ +.-..|..+.. -+.+++
T Consensus 251 ~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~---~g~~eiv-~~~~~G~lv~~----------~d~~~l 314 (359)
T PRK09922 251 VQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCM---SGPRDII-KPGLNGELYTP----------GNIDEF 314 (359)
T ss_pred HHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCC---CChHHHc-cCCCceEEECC----------CCHHHH
Confidence 223445666 553 2 3367999999999999986511 2223344 35456777743 489999
Q ss_pred HHHHHHHhcCch---HHHHHHHHHHHHHH
Q 046605 435 VKAVNEIMMGDR---AEEMRSRAKAFGEM 460 (487)
Q Consensus 435 ~~~i~~ll~~~~---~~~~~~~a~~l~~~ 460 (487)
.++|.++++... ...++++++++++.
T Consensus 315 a~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 315 VGKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred HHHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 999999998221 23344444444443
No 69
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.79 E-value=7.2e-06 Score=80.16 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=58.0
Q ss_pred CCCcEeecccchH---hhhcccCcccccc----------ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceE
Q 046605 348 GKGLIIRGWAPQV---LILDHEAVGGFVT----------HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGI 414 (487)
Q Consensus 348 ~~nv~~~~~vp~~---~ll~~~~~~~~I~----------HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~ 414 (487)
.+|+.+.+++|+. .++..+++ +|. -|...++.||+++|+|+|+.+.. + ....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~-~---~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS-G---IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC-C---cchhh-hCCCceE
Confidence 4789999999854 46777887 554 34457899999999999986642 2 23344 3444787
Q ss_pred eecccccccccCCccCHHHHHHHHHHHhc
Q 046605 415 GVGIQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
.... -+.+++.++|.++++
T Consensus 308 ~~~~----------~~~~~l~~~i~~~~~ 326 (355)
T cd03799 308 LVPP----------GDPEALADAIERLLD 326 (355)
T ss_pred EeCC----------CCHHHHHHHHHHHHh
Confidence 7753 489999999999997
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.77 E-value=3e-05 Score=75.87 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=56.2
Q ss_pred CCCcEeec-ccch---HhhhcccCcccccc----c--cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeec
Q 046605 348 GKGLIIRG-WAPQ---VLILDHEAVGGFVT----H--CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVG 417 (487)
Q Consensus 348 ~~nv~~~~-~vp~---~~ll~~~~~~~~I~----H--GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~ 417 (487)
.+++.+.. |+|+ ..++..+++ +|. - |..+++.||+++|+|+|+-+..+ ...+ ...+.|....
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 46777775 4885 347777777 552 2 44568999999999999977544 3334 3556777765
Q ss_pred ccccccccCCccCHHHHHHHHHHHhc
Q 046605 418 IQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
. -+.+++.+++.++++
T Consensus 318 ~----------~d~~~~~~~l~~l~~ 333 (366)
T cd03822 318 P----------GDPAALAEAIRRLLA 333 (366)
T ss_pred C----------CCHHHHHHHHHHHHc
Confidence 4 368999999999998
No 71
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.76 E-value=4.3e-07 Score=89.41 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=85.5
Q ss_pred CCcEEEEeccCcccC-CHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCcccccccCchhHHHH---hc--CCCcEeeccc
Q 046605 285 PNSVVYICFGSVANF-TSAQLMEIAMGLEASGQ-NFIWVVRKNKNNGGEEEKEDWLPEGFEKR---ME--GKGLIIRGWA 357 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~-~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~lp~~~~~~---~~--~~nv~~~~~v 357 (487)
+++.|++++|..... ..+.+..+++++..+.. ++++..+++.. .-+.+++. .. .+|+.+.+..
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~----------~~~~l~~~~~~~~~~~~~v~~~~~~ 266 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR----------TRPRIREAGLEFLGHHPNVLLISPL 266 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC----------hHHHHHHHHHhhccCCCCEEEECCc
Confidence 355788888876653 45668888888877643 35555544332 11122221 11 3678887665
Q ss_pred chH---hhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHH
Q 046605 358 PQV---LILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAI 434 (487)
Q Consensus 358 p~~---~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l 434 (487)
.+. .++..+++ ||+-.| |.+.||++.|+|+|+++.. |. +..++ +.|+++.+. -+.++|
T Consensus 267 ~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~-----------~~~~~i 327 (363)
T cd03786 267 GYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVG-----------TDPEAI 327 (363)
T ss_pred CHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecC-----------CCHHHH
Confidence 543 46777887 999998 7888999999999998743 32 33443 556665442 258999
Q ss_pred HHHHHHHhc
Q 046605 435 VKAVNEIMM 443 (487)
Q Consensus 435 ~~~i~~ll~ 443 (487)
.++|.++++
T Consensus 328 ~~~i~~ll~ 336 (363)
T cd03786 328 LAAIEKLLS 336 (363)
T ss_pred HHHHHHHhc
Confidence 999999998
No 72
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.75 E-value=2.4e-05 Score=78.12 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=52.8
Q ss_pred CCCcEeecccchH---hhhcccCcccccc---ccCch-hHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQV---LILDHEAVGGFVT---HCGWN-SILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~~---~ll~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
.+++.+.+|+|+. .+++.+++ +|. +-|.| ++.||+++|+|+|+-+..+ ....+ +. |-+... .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~--~- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA--E- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec--C-
Confidence 4568889999854 47777887 543 33444 9999999999999877542 23344 23 433222 2
Q ss_pred cccccCCccCHHHHHHHHHHHhc
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
.+.+++.+++.++++
T Consensus 318 --------~~~~~l~~~l~~~l~ 332 (398)
T cd03796 318 --------PDVESIVRKLEEAIS 332 (398)
T ss_pred --------CCHHHHHHHHHHHHh
Confidence 378999999999987
No 73
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.73 E-value=2.9e-05 Score=75.70 Aligned_cols=76 Identities=25% Similarity=0.289 Sum_probs=54.8
Q ss_pred CCcEeecccc-hHhhhcccCcccccccc----CchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeeccccccc
Q 046605 349 KGLIIRGWAP-QVLILDHEAVGGFVTHC----GWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCR 423 (487)
Q Consensus 349 ~nv~~~~~vp-~~~ll~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 423 (487)
+++.+.+... ...++..+++ +|..+ ..+++.||+++|+|+|+- |...+...+ +. .|..+..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeCC-----
Confidence 5666666554 3568888887 66543 357999999999999984 444555555 34 6666654
Q ss_pred ccCCccCHHHHHHHHHHHhc
Q 046605 424 IVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 424 ~~~~~~~~~~l~~~i~~ll~ 443 (487)
-+.+++.++|.++++
T Consensus 317 -----~~~~~l~~~i~~l~~ 331 (365)
T cd03807 317 -----GDPEALAEAIEALLA 331 (365)
T ss_pred -----CCHHHHHHHHHHHHh
Confidence 368999999999997
No 74
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.71 E-value=7.3e-05 Score=74.77 Aligned_cols=79 Identities=14% Similarity=0.007 Sum_probs=58.6
Q ss_pred CCCcEeecccchH---hhhcccCcccccc---c-cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQV---LILDHEAVGGFVT---H-CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~~---~ll~~~~~~~~I~---H-GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
.+++.+.+++++. +++..+++ +|. + |...++.||+++|+|+|+... ......+ +.-+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECCC--
Confidence 4679999999864 47888887 552 2 334589999999999998654 3445555 45567776653
Q ss_pred cccccCCccCHHHHHHHHHHHhc
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
-+.+++.++|.++++
T Consensus 353 --------~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 353 --------HDPADWADALARLLD 367 (405)
T ss_pred --------CCHHHHHHHHHHHHh
Confidence 478999999999997
No 75
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.70 E-value=2e-05 Score=77.10 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=78.8
Q ss_pred CcEEEEeccCccc-CCHHHHHHHHHHHHhc--CCcEEEEecCCCCCCCcccccccCchhHHHH-hcCCCcEeecccch-H
Q 046605 286 NSVVYICFGSVAN-FTSAQLMEIAMGLEAS--GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKR-MEGKGLIIRGWAPQ-V 360 (487)
Q Consensus 286 ~~~v~vs~Gs~~~-~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~vp~-~ 360 (487)
+..+++..|.... -..+.+...+..+... +.+++++-.+... +.+...+- ....+ ...+++.+.++.+. .
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~----~~~~~~~~-~~~~~~~~~~~v~~~g~~~~~~ 258 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGR----RFYYAELL-ELIKRLGLQDRVTFVGHCSDMP 258 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCccc----chHHHHHH-HHHHHcCCcceEEEcCCcccHH
Confidence 4466777787664 2344454455555442 3444444333221 11110000 00111 12467888888653 5
Q ss_pred hhhcccCcccccc--ccC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHH
Q 046605 361 LILDHEAVGGFVT--HCG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKA 437 (487)
Q Consensus 361 ~ll~~~~~~~~I~--HGG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~ 437 (487)
.++..+++-++-+ +-| ..++.||+++|+|+|+.-. ......+ +..+.|..+.. -+.+++.++
T Consensus 259 ~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~----------~~~~~l~~~ 323 (355)
T cd03819 259 AAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPP----------GDAEALAQA 323 (355)
T ss_pred HHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCC----------CCHHHHHHH
Confidence 5888888833333 223 3599999999999987653 3344455 45557877754 489999999
Q ss_pred HHHHhc
Q 046605 438 VNEIMM 443 (487)
Q Consensus 438 i~~ll~ 443 (487)
|.+++.
T Consensus 324 i~~~~~ 329 (355)
T cd03819 324 LDQILS 329 (355)
T ss_pred HHHHHh
Confidence 976664
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.69 E-value=2.5e-05 Score=76.53 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=81.1
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHhc-----CCcEEEEecCCCCCCCcccccccCchhHHHH---h-cCCCcEeecc
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEAS-----GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKR---M-EGKGLIIRGW 356 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~---~-~~~nv~~~~~ 356 (487)
+..+++..|+... .+....+++++..+ +.+++++-.+.. .+.+... . ..+|+.+.++
T Consensus 187 ~~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~------------~~~~~~~~~~~~~~~~v~~~g~ 252 (360)
T cd04951 187 DTFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPL------------RATLERLIKALGLSNRVKLLGL 252 (360)
T ss_pred CCEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCCc------------HHHHHHHHHhcCCCCcEEEecc
Confidence 3467788887653 23334444444432 456665533321 1122211 1 2467888887
Q ss_pred cch-HhhhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCH
Q 046605 357 APQ-VLILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKR 431 (487)
Q Consensus 357 vp~-~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~ 431 (487)
..+ ..++..+++ +|.- |..+++.||+.+|+|+|+- |.......+ +. .|..+.. -+.
T Consensus 253 ~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~----------~~~ 313 (360)
T cd04951 253 RDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI----------SDP 313 (360)
T ss_pred cccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC----------CCH
Confidence 764 568888887 4432 3356899999999999974 555566666 45 4554543 488
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHH
Q 046605 432 EAIVKAVNEIMMGDRAEEMRSRAKA 456 (487)
Q Consensus 432 ~~l~~~i~~ll~~~~~~~~~~~a~~ 456 (487)
+++.+++.++++. ++.+++...+
T Consensus 314 ~~~~~~i~~ll~~--~~~~~~~~~~ 336 (360)
T cd04951 314 EALANKIDEILKM--SGEERDIIGA 336 (360)
T ss_pred HHHHHHHHHHHhC--CHHHHHHHHH
Confidence 9999999999841 3445444433
No 77
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.69 E-value=1.1e-05 Score=78.01 Aligned_cols=130 Identities=17% Similarity=0.219 Sum_probs=76.1
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHhc-----CCcEEEEecCCCCCCCcccccccCchhHHHHh-cCCCcEeecccch
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEAS-----GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM-EGKGLIIRGWAPQ 359 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~vp~ 359 (487)
+..+++..|+... .+....+++++..+ +.++++. |..... +.+. .+.... ..+++.+.++.+.
T Consensus 188 ~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~~---~~~~-----~~~~~~~~~~~v~~~g~~~~ 256 (353)
T cd03811 188 DGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVIL-GDGPLR---EELE-----ALAKELGLADRVHFLGFQSN 256 (353)
T ss_pred CceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEE-cCCccH---HHHH-----HHHHhcCCCccEEEecccCC
Confidence 4467788887763 23344455555443 3444443 322210 1111 111111 2467888888775
Q ss_pred -HhhhcccCcccccc--c--cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHH
Q 046605 360 -VLILDHEAVGGFVT--H--CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAI 434 (487)
Q Consensus 360 -~~ll~~~~~~~~I~--H--GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l 434 (487)
.+++..+++ +|. + |..+++.||+++|+|+|+-... .....+ +..+.|...+. -+.+.+
T Consensus 257 ~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~----------~~~~~~ 319 (353)
T cd03811 257 PYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPV----------GDEAAL 319 (353)
T ss_pred HHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECC----------CCHHHH
Confidence 568888887 552 2 4456899999999999985433 556666 57778887754 477777
Q ss_pred ---HHHHHHHhc
Q 046605 435 ---VKAVNEIMM 443 (487)
Q Consensus 435 ---~~~i~~ll~ 443 (487)
.+++.++++
T Consensus 320 ~~~~~~i~~~~~ 331 (353)
T cd03811 320 AAAALALLDLLL 331 (353)
T ss_pred HHHHHHHHhccC
Confidence 445555554
No 78
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=7.5e-05 Score=71.61 Aligned_cols=341 Identities=15% Similarity=0.156 Sum_probs=179.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEe-CCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccc
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVIT-TPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLD 86 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (487)
.+-+-.-+-|-++-.++|.++|.++ ++.|++-| ++.-.+.+.+. .|..+....+|++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~------~~~~v~h~YlP~D-------------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAAL------FGDSVIHQYLPLD-------------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHH------cCCCeEEEecCcC--------------
Confidence 4445556889999999999999999 89988887 55555555554 2323434444421
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEEechhHHHHHHHHHhhhhc
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVFHGTSFFSLCAIKCLALYE 164 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (487)
. -..+.+.++.++||++|.--... ....-++..|+|.+.++.=
T Consensus 111 ---------~-----------~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR--------------- 155 (419)
T COG1519 111 ---------L-----------PIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNAR--------------- 155 (419)
T ss_pred ---------c-----------hHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee---------------
Confidence 0 11456677788999966443333 5666788899999998531
Q ss_pred CCCCCCCCCCccccCCCCCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcccCccEEEEcchhhhcHHHHHHHHHHhCC
Q 046605 165 PHKKVSSDSEPFVMPNLPGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSDLRSYGVVVNSFYELEHAYADHYRKALGR 244 (487)
Q Consensus 165 ~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~ 244 (487)
+.-+....| . ....+.+. .+...+.++..+-..- +.+..---+
T Consensus 156 ----------------------LS~rS~~~y---~----k~~~~~~~---~~~~i~li~aQse~D~-----~Rf~~LGa~ 198 (419)
T COG1519 156 ----------------------LSDRSFARY---A----KLKFLARL---LFKNIDLILAQSEEDA-----QRFRSLGAK 198 (419)
T ss_pred ----------------------echhhhHHH---H----HHHHHHHH---HHHhcceeeecCHHHH-----HHHHhcCCc
Confidence 000000100 0 01112222 1223344444432111 112221124
Q ss_pred ceEEeccccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhc--CCcEEEEe
Q 046605 245 RAWHIGPVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEAS--GQNFIWVV 322 (487)
Q Consensus 245 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~ 322 (487)
++..+|-+-.... +...++.....|-..-+....+.|.-+|.. ...+.......++.+. +..+||+-
T Consensus 199 ~v~v~GNlKfd~~----------~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVP 267 (419)
T COG1519 199 PVVVTGNLKFDIE----------PPPQLAAELAALRRQLGGHRPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVP 267 (419)
T ss_pred ceEEecceeecCC----------CChhhHHHHHHHHHhcCCCCceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEec
Confidence 4666776533211 111122222222222222124556555532 2333344444444433 24455553
Q ss_pred cCCCCCCCcccccccCchhHHHHh--------------cCCCcEeecccch-HhhhcccCcc---c-cccccCchhHHHH
Q 046605 323 RKNKNNGGEEEKEDWLPEGFEKRM--------------EGKGLIIRGWAPQ-VLILDHEAVG---G-FVTHCGWNSILEG 383 (487)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~~~~~~~--------------~~~nv~~~~~vp~-~~ll~~~~~~---~-~I~HGG~gs~~ea 383 (487)
...+ .+.. + +++.... ...+|.+.|-+-- ..++.-+++. . ++-+||+| ..|+
T Consensus 268 RHpE------Rf~~-v-~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEp 338 (419)
T COG1519 268 RHPE------RFKA-V-ENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEP 338 (419)
T ss_pred CChh------hHHH-H-HHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhH
Confidence 3222 2111 0 0111110 0224555555442 3333333331 1 56689987 6899
Q ss_pred hhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 046605 384 VTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKR 463 (487)
Q Consensus 384 l~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~ 463 (487)
+++|+|+|.=|+..-|.+.++++ +..|+|+.++ + ++.|.+++..+++ |+..+++..+-+..+-+
T Consensus 339 a~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~----------~--~~~l~~~v~~l~~---~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 339 AAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVE----------D--ADLLAKAVELLLA---DEDKREAYGRAGLEFLA 402 (419)
T ss_pred HHcCCCEEeCCccccHHHHHHHH-HhcCCeEEEC----------C--HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 6999999884 2 7888888888877 44555444333333332
Q ss_pred HHhcCCCcHHHHHHHHHHHhh
Q 046605 464 AVENGGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 464 a~~~~g~~~~~~~~~~~~l~~ 484 (487)
+.. .++++.++.|+.
T Consensus 403 --~~~----gal~r~l~~l~~ 417 (419)
T COG1519 403 --QNR----GALARTLEALKP 417 (419)
T ss_pred --Hhh----HHHHHHHHHhhh
Confidence 122 234566665554
No 79
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.67 E-value=1e-07 Score=76.50 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=81.2
Q ss_pred EEEEeccCcccC---CHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCcccccccCchhHHHHhcCCCcE--eecccch-H
Q 046605 288 VVYICFGSVANF---TSAQLMEIAMGLEASGQ-NFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLI--IRGWAPQ-V 360 (487)
Q Consensus 288 ~v~vs~Gs~~~~---~~~~~~~~~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~--~~~~vp~-~ 360 (487)
.+|||-||.... +.-.-.++++.+.+.|+ +.|...|.+... .++...+..+...+. -.+|-|- .
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~---------~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF---------FGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC---------CCCHHHhhcccCCeEEEEEecCccHH
Confidence 899999998852 22334556677778887 788888877542 343333222233443 3567884 5
Q ss_pred hhhcccCccccccccCchhHHHHhhcCCcEeccCc----cccchhhHHHHHHHhhce
Q 046605 361 LILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPV----YAEQFYNEKIVNEVLKIG 413 (487)
Q Consensus 361 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~----~~DQ~~~a~rv~~~~G~G 413 (487)
+....+++ +|.|+|+||+.|.|..|+|.|+++- -..|-..|..++ +.|==
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL 129 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYL 129 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcE
Confidence 67777787 9999999999999999999999994 246899999885 65543
No 80
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.66 E-value=3.7e-05 Score=75.64 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=59.7
Q ss_pred CCCcEeecccchHh---hhcccCcccccc----------ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceE
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFVT----------HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGI 414 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I~----------HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~ 414 (487)
.+++.+.+++|+.+ ++..+++ +|. -|-.+++.||+++|+|+|+-+.. .++..+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 46788999998644 5777887 543 23357999999999999987653 355566 4667787
Q ss_pred eecccccccccCCccCHHHHHHHHHHHhc
Q 046605 415 GVGIQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
.++. -+.+++.++|.++++
T Consensus 317 ~~~~----------~d~~~l~~~i~~l~~ 335 (367)
T cd05844 317 LVPE----------GDVAALAAALGRLLA 335 (367)
T ss_pred EECC----------CCHHHHHHHHHHHHc
Confidence 7754 478999999999998
No 81
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.60 E-value=2e-05 Score=76.41 Aligned_cols=128 Identities=13% Similarity=0.037 Sum_probs=78.2
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHh--cCCCcEeecccchH---hh
Q 046605 288 VVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM--EGKGLIIRGWAPQV---LI 362 (487)
Q Consensus 288 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~vp~~---~l 362 (487)
.+++..|... ..+....+++++.+.+.++++.-.+.... . + ....... ..+++.+.+++++. .+
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~~----~----~-~~~~~~~~~~~~~v~~~G~~~~~~~~~~ 240 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDPD----Y----F-YREIAPELLDGPDIEYLGEVGGAEKAEL 240 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCHH----H----H-HHHHHHhcccCCcEEEeCCCCHHHHHHH
Confidence 3455567764 33445567778888888877655443211 1 0 1111111 14789999999975 46
Q ss_pred hcccCcccccc--ccC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHH
Q 046605 363 LDHEAVGGFVT--HCG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVN 439 (487)
Q Consensus 363 l~~~~~~~~I~--HGG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~ 439 (487)
++.+++-++-+ +-| ..++.||+++|+|+|+-.. ......+ +.-..|... . . .+++.+++.
T Consensus 241 ~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i-~~~~~g~l~--~--------~--~~~l~~~l~ 303 (335)
T cd03802 241 LGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVV-EDGVTGFLV--D--------S--VEELAAAVA 303 (335)
T ss_pred HHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhe-eCCCcEEEe--C--------C--HHHHHHHHH
Confidence 77788733323 234 3489999999999997764 2333344 232256544 2 3 899999999
Q ss_pred HHhc
Q 046605 440 EIMM 443 (487)
Q Consensus 440 ~ll~ 443 (487)
++++
T Consensus 304 ~l~~ 307 (335)
T cd03802 304 RADR 307 (335)
T ss_pred HHhc
Confidence 8875
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.57 E-value=9.8e-05 Score=72.39 Aligned_cols=155 Identities=16% Similarity=0.197 Sum_probs=84.0
Q ss_pred EEeccCcccCCHHHHHHHHHHHHhcC--CcEEEEecCCCCCCCcccccccCchhHHH-HhcCCCcEeecccchHh---hh
Q 046605 290 YICFGSVANFTSAQLMEIAMGLEASG--QNFIWVVRKNKNNGGEEEKEDWLPEGFEK-RMEGKGLIIRGWAPQVL---IL 363 (487)
Q Consensus 290 ~vs~Gs~~~~~~~~~~~~~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~~~~~vp~~~---ll 363 (487)
++..|+... .+.+..+++++.++. .+++++-.+... +.+. +.+.+ ....++|.+.+++++.+ ++
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~----~~~~----~~~~~~~~~~~~V~~~g~~~~~~~~~~~ 265 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHN----TPYG----KLLKEKAAADPRIIFVGPIYDQELLELL 265 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCc----chHH----HHHHHHhCCCCcEEEccccChHHHHHHH
Confidence 456677653 344556667776654 454444333221 1111 12221 12257899999999764 55
Q ss_pred cccCcccccccc----C-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHH
Q 046605 364 DHEAVGGFVTHC----G-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAV 438 (487)
Q Consensus 364 ~~~~~~~~I~HG----G-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i 438 (487)
..+++ ++-+. | ..++.||+.+|+|+|+..... +...+ +. .|...... +. +.++|
T Consensus 266 ~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~----------~~--l~~~i 324 (363)
T cd04955 266 RYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG----------DD--LASLL 324 (363)
T ss_pred HhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc----------hH--HHHHH
Confidence 55666 44332 2 247999999999999875432 22233 23 24333322 11 99999
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 046605 439 NEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIED 481 (487)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 481 (487)
.++++ +++..+ ++++..++..++.-+.....+++++-
T Consensus 325 ~~l~~---~~~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 325 EELEA---DPEEVS---AMAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred HHHHh---CHHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99997 543332 23343333334445555555555543
No 83
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.57 E-value=7.1e-05 Score=75.65 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=67.0
Q ss_pred CCCcEeecccchHhh---hccc----Cccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEee
Q 046605 348 GKGLIIRGWAPQVLI---LDHE----AVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGV 416 (487)
Q Consensus 348 ~~nv~~~~~vp~~~l---l~~~----~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l 416 (487)
.+++.+.+++++.++ +..+ ++ ||.. |-..++.||+++|+|+|+-.. ......+ +.-..|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEe
Confidence 456777788776554 5544 45 6643 334599999999999998764 3344455 344567777
Q ss_pred cccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 046605 417 GIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSL 478 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~ 478 (487)
.. -++++|.++|.++++ ++..+ +++++..++.+.+.-+-...++++
T Consensus 389 ~~----------~d~~~la~~i~~ll~---~~~~~---~~~~~~a~~~~~~~fsw~~~~~~~ 434 (439)
T TIGR02472 389 DV----------LDLEAIASALEDALS---DSSQW---QLWSRNGIEGVRRHYSWDAHVEKY 434 (439)
T ss_pred CC----------CCHHHHHHHHHHHHh---CHHHH---HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 54 478999999999998 55433 334444433333344433333333
No 84
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.54 E-value=2.1e-05 Score=78.46 Aligned_cols=109 Identities=24% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCCcEeecccch-HhhhcccCccccc--cc--cCch-hHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeeccccc
Q 046605 348 GKGLIIRGWAPQ-VLILDHEAVGGFV--TH--CGWN-SILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKW 421 (487)
Q Consensus 348 ~~nv~~~~~vp~-~~ll~~~~~~~~I--~H--GG~g-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~ 421 (487)
.++|.+.+++++ ..++..+++ +| ++ .|.+ .+.||+.+|+|+|+-+...+. .. +..|.|+.+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~-~-- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA-A-- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC-C--
Confidence 578999999995 458888888 54 32 4544 699999999999998754321 12 2346676653 3
Q ss_pred ccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 046605 422 CRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIED 481 (487)
Q Consensus 422 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 481 (487)
+++++.++|.++++ |+..+++ +++..++.+++.-+-...++.+.+-
T Consensus 348 --------~~~~la~ai~~ll~---~~~~~~~---~~~~ar~~v~~~fsw~~~~~~~~~~ 393 (397)
T TIGR03087 348 --------DPADFAAAILALLA---NPAEREE---LGQAARRRVLQHYHWPRNLARLDAL 393 (397)
T ss_pred --------CHHHHHHHHHHHHc---CHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 78999999999998 5543332 3333333333444444544444443
No 85
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.52 E-value=6.6e-05 Score=73.51 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=60.3
Q ss_pred CCCcEeecccch-HhhhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccc
Q 046605 348 GKGLIIRGWAPQ-VLILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWC 422 (487)
Q Consensus 348 ~~nv~~~~~vp~-~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 422 (487)
.+++.+.++..+ .+++..+++ +|+- |-..++.||+++|+|+|+-...+ ....+ +. +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC----
Confidence 467888887554 568888887 5532 45679999999999999755433 34445 34 55555432
Q ss_pred cccCCccCHHHHHHHHHHHhcCchHHHHHHHHH
Q 046605 423 RIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAK 455 (487)
Q Consensus 423 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~ 455 (487)
-+++++.++|.++++ ++..+++..
T Consensus 316 ------~~~~~~a~~i~~l~~---~~~~~~~~~ 339 (358)
T cd03812 316 ------ESPEIWAEEILKLKS---EDRRERSSE 339 (358)
T ss_pred ------CCHHHHHHHHHHHHh---Ccchhhhhh
Confidence 368999999999998 556554443
No 86
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.52 E-value=0.00021 Score=71.00 Aligned_cols=131 Identities=17% Similarity=0.184 Sum_probs=77.2
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHHhc--CCcEEEEecCCCCCCCcccccccCchhHHHHh-----cCCCcEe-ecccch
Q 046605 288 VVYICFGSVANFTSAQLMEIAMGLEAS--GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM-----EGKGLII-RGWAPQ 359 (487)
Q Consensus 288 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~nv~~-~~~vp~ 359 (487)
++++..|.... .+.+..+++++..+ +.++++..++.... . +-+.+.... ...++.. ..++++
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~----~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTP----E----VAEEVRQAVALLDRNRTGIIWINKMLPK 271 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcH----H----HHHHHHHHHHHhccccCceEEecCCCCH
Confidence 56666676653 34466666777665 45665554443321 1 111122111 1233543 456774
Q ss_pred ---HhhhcccCcccccc----ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccC--
Q 046605 360 ---VLILDHEAVGGFVT----HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVK-- 430 (487)
Q Consensus 360 ---~~ll~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~-- 430 (487)
..++..+++ +|. -|...++.||+++|+|+|+-.. ......+ +.-+.|..++.. ..+
T Consensus 272 ~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~--------~~~~~ 336 (388)
T TIGR02149 272 EELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPD--------NSDAD 336 (388)
T ss_pred HHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCC--------CCccc
Confidence 446888887 553 2334577999999999998653 3455556 465678887654 221
Q ss_pred --HHHHHHHHHHHhc
Q 046605 431 --REAIVKAVNEIMM 443 (487)
Q Consensus 431 --~~~l~~~i~~ll~ 443 (487)
.+++.++|.++++
T Consensus 337 ~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 337 GFQAELAKAINILLA 351 (388)
T ss_pred chHHHHHHHHHHHHh
Confidence 2899999999987
No 87
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.50 E-value=1.3e-06 Score=84.53 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=76.8
Q ss_pred CCCcEEEEeccCcccCC-H---HHHHHHHHHHHhc-CCcEEEEecCCCCCCCcccccccCchhHHHHhc-CCCcEeeccc
Q 046605 284 QPNSVVYICFGSVANFT-S---AQLMEIAMGLEAS-GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRME-GKGLIIRGWA 357 (487)
Q Consensus 284 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~v 357 (487)
..++.+++++=...... + ..+..+++++.+. ++++||.+..... .-..+.+..+ -+|+.+.+..
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~----------~~~~i~~~l~~~~~v~~~~~l 247 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR----------GSDIIIEKLKKYDNVRLIEPL 247 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH----------HHHHHHHHHTT-TTEEEE---
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch----------HHHHHHHHhcccCCEEEECCC
Confidence 45779999985555544 3 3455566666666 7789998875432 1112222222 2589888776
Q ss_pred c---hHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHH
Q 046605 358 P---QVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAI 434 (487)
Q Consensus 358 p---~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l 434 (487)
+ ...+|.++++ +|+..| |-.-||.++|+|+|.+=..++.+ .. ...|..+.+ ..+.++|
T Consensus 248 ~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRq----e~-r~~~~nvlv-----------~~~~~~I 308 (346)
T PF02350_consen 248 GYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQ----EG-RERGSNVLV-----------GTDPEAI 308 (346)
T ss_dssp -HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-H----HH-HHTTSEEEE-----------TSSHHHH
T ss_pred CHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCH----HH-HhhcceEEe-----------CCCHHHH
Confidence 6 4568888888 999999 44449999999999992222222 11 123444442 4789999
Q ss_pred HHHHHHHhc
Q 046605 435 VKAVNEIMM 443 (487)
Q Consensus 435 ~~~i~~ll~ 443 (487)
.+++.++++
T Consensus 309 ~~ai~~~l~ 317 (346)
T PF02350_consen 309 IQAIEKALS 317 (346)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999997
No 88
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.49 E-value=0.00057 Score=73.96 Aligned_cols=157 Identities=13% Similarity=0.174 Sum_probs=87.2
Q ss_pred hhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcC-----CcEEEEecCCCCCCCccccccc---CchhHH--
Q 046605 274 QECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASG-----QNFIWVVRKNKNNGGEEEKEDW---LPEGFE-- 343 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-----~~~i~~~~~~~~~~~~~~~~~~---lp~~~~-- 343 (487)
..+..|+... ++ ++++..|... +.+.+..+++|+..+. .++.+.+|..... +..... .-..+.
T Consensus 468 ~~l~r~~~~p-dk-pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~---d~l~~~~~~~l~~L~~l 540 (1050)
T TIGR02468 468 SEIMRFFTNP-RK-PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDI---DEMSSGSSSVLTSVLKL 540 (1050)
T ss_pred HHHHhhcccC-CC-cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchh---hhhhccchHHHHHHHHH
Confidence 3566676543 33 4556666655 3445666777776542 2444455543211 000000 000111
Q ss_pred -HHhc-CCCcEeecccchHh---hhcccC--ccccccc---cC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhc
Q 046605 344 -KRME-GKGLIIRGWAPQVL---ILDHEA--VGGFVTH---CG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKI 412 (487)
Q Consensus 344 -~~~~-~~nv~~~~~vp~~~---ll~~~~--~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~ 412 (487)
.+.. .++|.+.+++++.+ ++..++ ..+||.- =| ..++.||+++|+|+|+-... .....+ +.-.-
T Consensus 541 i~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII-~~g~n 615 (1050)
T TIGR02468 541 IDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIH-RVLDN 615 (1050)
T ss_pred HHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHh-ccCCc
Confidence 1111 46688888888654 454442 1126553 23 45899999999999997643 233344 34445
Q ss_pred eEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHH
Q 046605 413 GIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAK 455 (487)
Q Consensus 413 G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~ 455 (487)
|+.++. -++++|.++|.++++ ++..++++.
T Consensus 616 GlLVdP----------~D~eaLA~AL~~LL~---Dpelr~~m~ 645 (1050)
T TIGR02468 616 GLLVDP----------HDQQAIADALLKLVA---DKQLWAECR 645 (1050)
T ss_pred EEEECC----------CCHHHHHHHHHHHhh---CHHHHHHHH
Confidence 777754 489999999999998 555444433
No 89
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.46 E-value=0.00011 Score=72.72 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=67.9
Q ss_pred CCcEeecccc-hHhhhcccCccccc--cc--cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeeccccccc
Q 046605 349 KGLIIRGWAP-QVLILDHEAVGGFV--TH--CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCR 423 (487)
Q Consensus 349 ~nv~~~~~vp-~~~ll~~~~~~~~I--~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 423 (487)
.++.+.++.. -.+++..+++ +| ++ |-..++.||+++|+|+|+-.. ......+ +.-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i-~~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELV-QHGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHh-cCCCceEEeCC-----
Confidence 4466655544 3568888888 55 32 446699999999999999664 3345455 35456776654
Q ss_pred ccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 046605 424 IVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIED 481 (487)
Q Consensus 424 ~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 481 (487)
-+.+++.++|.++++ ++..++ .+++..++.+.+.-+....+.++.+-
T Consensus 323 -----~d~~~la~~i~~l~~---~~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~ 369 (374)
T TIGR03088 323 -----GDAVALARALQPYVS---DPAARR---AHGAAGRARAEQQFSINAMVAAYAGL 369 (374)
T ss_pred -----CCHHHHHHHHHHHHh---CHHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 478999999999997 444332 23333333333344444444444443
No 90
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.45 E-value=7.8e-05 Score=72.23 Aligned_cols=194 Identities=16% Similarity=0.126 Sum_probs=109.7
Q ss_pred hCCceEEec-cccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhc-----C
Q 046605 242 LGRRAWHIG-PVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEAS-----G 315 (487)
Q Consensus 242 ~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~ 315 (487)
.+-++.||| |+...... ...+....+.+ -.+++++|.+--||-...=...+..++++.+.+ +
T Consensus 151 ~g~~~~~VGHPl~d~~~~-----------~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~ 218 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKP-----------EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPD 218 (373)
T ss_pred cCCCeEEECCcchhhhcc-----------CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 457899999 65433211 11233333433 223567999999987763344455556655432 4
Q ss_pred CcEEEEecCCCCCCCcccccccCchhHHHHh--cCCCcEeec-ccchHhhhcccCccccccccCchhHHHHhhcCCcEec
Q 046605 316 QNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM--EGKGLIIRG-WAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVT 392 (487)
Q Consensus 316 ~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~-~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~ 392 (487)
.++++....... .+.+.... ...++.+.- .-.-.+++..+++ .+.-.| ..|.|+...|+|||+
T Consensus 219 l~fvvp~a~~~~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv 284 (373)
T PF02684_consen 219 LQFVVPVAPEVH-----------EELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVV 284 (373)
T ss_pred eEEEEecCCHHH-----------HHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEE
Confidence 466655443321 11111111 123333322 2235668888887 444444 478999999999988
Q ss_pred cCcc-ccchhhHHHHHHHhh------------ceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046605 393 WPVY-AEQFYNEKIVNEVLK------------IGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGE 459 (487)
Q Consensus 393 ~P~~-~DQ~~~a~rv~~~~G------------~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~ 459 (487)
+=-. .=-...|++++ +.. +-..+ .++..|++.|.+++.++|+ |+..++..+...+
T Consensus 285 ~Yk~~~lt~~iak~lv-k~~~isL~Niia~~~v~PEl--------iQ~~~~~~~i~~~~~~ll~---~~~~~~~~~~~~~ 352 (373)
T PF02684_consen 285 AYKVSPLTYFIAKRLV-KVKYISLPNIIAGREVVPEL--------IQEDATPENIAAELLELLE---NPEKRKKQKELFR 352 (373)
T ss_pred EEcCcHHHHHHHHHhh-cCCEeechhhhcCCCcchhh--------hcccCCHHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence 6422 12233444443 221 11122 3348899999999999998 5555666666666
Q ss_pred HHHHHHhcCCCcHH
Q 046605 460 MAKRAVENGGSSSS 473 (487)
Q Consensus 460 ~~~~a~~~~g~~~~ 473 (487)
.+.+..+.|.++..
T Consensus 353 ~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 353 EIRQLLGPGASSRA 366 (373)
T ss_pred HHHHhhhhccCCHH
Confidence 66665566766664
No 91
>PLN02275 transferase, transferring glycosyl groups
Probab=98.41 E-value=0.00058 Score=67.36 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=51.9
Q ss_pred CCcEeec-ccchHh---hhcccCcccccc-c-----cC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeec
Q 046605 349 KGLIIRG-WAPQVL---ILDHEAVGGFVT-H-----CG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVG 417 (487)
Q Consensus 349 ~nv~~~~-~vp~~~---ll~~~~~~~~I~-H-----GG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~ 417 (487)
+|+.+.. |+|..+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ......+ +.-+.|..+.
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 5666655 788655 5888888 552 1 12 3479999999999998643 3355556 5666787752
Q ss_pred ccccccccCCccCHHHHHHHHHHHh
Q 046605 418 IQKWCRIVGDFVKREAIVKAVNEIM 442 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~i~~ll 442 (487)
++++|.++|.++|
T Consensus 359 ------------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ------------SSSELADQLLELL 371 (371)
T ss_pred ------------CHHHHHHHHHHhC
Confidence 3688999988765
No 92
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.41 E-value=4.2e-05 Score=74.94 Aligned_cols=131 Identities=15% Similarity=0.190 Sum_probs=82.2
Q ss_pred CcEEEEeccCcc--c-CCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhc-CCCcEeecccc---
Q 046605 286 NSVVYICFGSVA--N-FTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRME-GKGLIIRGWAP--- 358 (487)
Q Consensus 286 ~~~v~vs~Gs~~--~-~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~vp--- 358 (487)
++.|+|++=... . ...+.+..+++++...+.++++..+..... ++.+ -+.+..... .+|+.+.+-.+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~--~~~i----~~~i~~~~~~~~~v~l~~~l~~~~ 274 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG--SRII----NEAIEEYVNEHPNFRLFKSLGQER 274 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC--chHH----HHHHHHHhcCCCCEEEECCCChHH
Confidence 458888885543 3 446789999999988877777766543211 0111 111222111 46788887655
Q ss_pred hHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHH
Q 046605 359 QVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAV 438 (487)
Q Consensus 359 ~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i 438 (487)
...++.++++ +|+.++.|- .||.+.|+|+|.+- +.+ ... ..|..+.+ . ..++++|.+++
T Consensus 275 ~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~-~~g~nvl~-v---------g~~~~~I~~a~ 333 (365)
T TIGR03568 275 YLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGR-LRADSVID-V---------DPDKEEIVKAI 333 (365)
T ss_pred HHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc----hhh-hhcCeEEE-e---------CCCHHHHHHHH
Confidence 4568888887 998876555 99999999999774 322 111 22332221 1 35789999999
Q ss_pred HHHhc
Q 046605 439 NEIMM 443 (487)
Q Consensus 439 ~~ll~ 443 (487)
.++++
T Consensus 334 ~~~~~ 338 (365)
T TIGR03568 334 EKLLD 338 (365)
T ss_pred HHHhC
Confidence 99664
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=0.0013 Score=69.41 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=64.7
Q ss_pred CCCcEeecccch-HhhhcccCcccccc---ccC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccc
Q 046605 348 GKGLIIRGWAPQ-VLILDHEAVGGFVT---HCG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWC 422 (487)
Q Consensus 348 ~~nv~~~~~vp~-~~ll~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 422 (487)
.++|.+.+|.++ ..++..+++ ||. +.| .+++.||+.+|+|+|+-.. ......+ +.-..|+.+...
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHc-cCCCCEEEeCCC---
Confidence 467888898875 558888888 543 445 5689999999999999764 2344455 344468888765
Q ss_pred cccCCccCHHHHHHHHHHHhc-CchHHHHHHHHHHHH
Q 046605 423 RIVGDFVKREAIVKAVNEIMM-GDRAEEMRSRAKAFG 458 (487)
Q Consensus 423 ~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~l~ 458 (487)
+.+++++.+++.+++. -..++.+++++++..
T Consensus 643 -----d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 -----TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred -----CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 5667777777777664 111456666554443
No 94
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.34 E-value=0.0009 Score=68.05 Aligned_cols=198 Identities=12% Similarity=0.068 Sum_probs=102.1
Q ss_pred hcHHHHHHHHHHhCCceEEec-cccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHH
Q 046605 230 LEHAYADHYRKALGRRAWHIG-PVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIA 308 (487)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~ 308 (487)
+|.+++. ..+-++.+|| |+....+ ...+.++..+-+.-.+++++|-+--||-.+.=...+..++
T Consensus 371 FE~~~y~----~~gv~v~yVGHPL~d~i~-----------~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l 435 (608)
T PRK01021 371 FEQNLFK----DSPLRTVYLGHPLVETIS-----------SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQV 435 (608)
T ss_pred cCHHHHH----hcCCCeEEECCcHHhhcc-----------cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 4555442 3568899999 6543211 0112333444444444567899999987764455566677
Q ss_pred HHHH--hc--CCcEEEEecCCCCCCCcccccccCchhHHHHhcCCC---cEeecccchHhhhcccCccccccccCchhHH
Q 046605 309 MGLE--AS--GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKG---LIIRGWAPQVLILDHEAVGGFVTHCGWNSIL 381 (487)
Q Consensus 309 ~a~~--~~--~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n---v~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~ 381 (487)
++.+ .+ +.++++....... .+.+++..+..+ +.+..--...++++.|++ .+.-.|- .|.
T Consensus 436 ~aa~~~~l~~~l~fvvp~a~~~~-----------~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTL 501 (608)
T PRK01021 436 QAFLASSLASTHQLLVSSANPKY-----------DHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVL 501 (608)
T ss_pred HHHHHHHhccCeEEEEecCchhh-----------HHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHH
Confidence 7766 43 3455553222210 112222221111 232211012578888887 5555554 689
Q ss_pred HHhhcCCcEeccCcc-ccchhhHHHHHHHh----------hceEeeccccccccc-CCccCHHHHHHHHHHHhc-CchHH
Q 046605 382 EGVTAGVPLVTWPVY-AEQFYNEKIVNEVL----------KIGIGVGIQKWCRIV-GDFVKREAIVKAVNEIMM-GDRAE 448 (487)
Q Consensus 382 eal~~GvP~l~~P~~-~DQ~~~a~rv~~~~----------G~G~~l~~~~~~~~~-~~~~~~~~l~~~i~~ll~-~~~~~ 448 (487)
|+...|+||+++=-. .=-...|++++ +. =+|..+-+. -.+ +.+.|++.|.+++ ++|+ .+...
T Consensus 502 EaAL~g~PmVV~YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPE---llqgQ~~~tpe~La~~l-~lL~d~~~r~ 576 (608)
T PRK01021 502 ETALNQTPTIVTCQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPE---FIGGKKDFQPEEVAAAL-DILKTSQSKE 576 (608)
T ss_pred HHHHhCCCEEEEEecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchh---hcCCcccCCHHHHHHHH-HHhcCHHHHH
Confidence 999999999885321 11234455554 31 011111111 011 2478999999997 7776 11122
Q ss_pred HHHHHHHHHHHHH
Q 046605 449 EMRSRAKAFGEMA 461 (487)
Q Consensus 449 ~~~~~a~~l~~~~ 461 (487)
.+++..+++++++
T Consensus 577 ~~~~~l~~lr~~L 589 (608)
T PRK01021 577 KQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 95
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.34 E-value=0.00022 Score=69.74 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCcEeecccchH---hhhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQV---LILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~~---~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
.+++.+.+++|+. +++..+++ +|.- |..+++.||+++|+|+|+-.. ......+ +. .|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~-~~--~~~~~~~-- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNI----SSLPEVA-GD--AALYFDP-- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCC----CCcccee-cC--ceeeeCC--
Confidence 5789999999865 46777787 4422 345689999999999998553 2222223 22 3444543
Q ss_pred cccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGE 459 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~ 459 (487)
-+.+++.++|.++++ |+..+.++.+-+.
T Consensus 321 --------~~~~~~~~~i~~l~~---~~~~~~~~~~~~~ 348 (365)
T cd03809 321 --------LDPEALAAAIERLLE---DPALREELRERGL 348 (365)
T ss_pred --------CCHHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence 478999999999998 6666655554443
No 96
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.30 E-value=0.00068 Score=67.70 Aligned_cols=114 Identities=20% Similarity=0.193 Sum_probs=71.2
Q ss_pred CCCcEeecccchHh---hhcccCcccccc--c-------cCc-hhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceE
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFVT--H-------CGW-NSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGI 414 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I~--H-------GG~-gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~ 414 (487)
.+++.+.+|+|+.+ ++..+++ +|. . -|. .++.||+.+|+|+|+-... .....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 46799999999754 6777887 553 2 344 5689999999999986542 344445 3445677
Q ss_pred eecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 046605 415 GVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLS 483 (487)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~ 483 (487)
.++. -+.+++.++|.++++.+ ++. .+++++..++.+++.-+.....+++.+-++
T Consensus 351 lv~~----------~d~~~la~ai~~l~~~d--~~~---~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPE----------NDAQALAQRLAAFSQLD--TDE---LAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCC----------CCHHHHHHHHHHHHhCC--HHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 7754 47999999999998622 221 122223333222334445555566655543
No 97
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.29 E-value=8.5e-05 Score=72.70 Aligned_cols=125 Identities=12% Similarity=0.129 Sum_probs=83.6
Q ss_pred EEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchH---hhhcc
Q 046605 289 VYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQV---LILDH 365 (487)
Q Consensus 289 v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~---~ll~~ 365 (487)
.++..|+.. ..+....++++++.++.++++.-.+.. .+.++. ...+||.+.+++|+. .++..
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~------------~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPE------------LDRLRA-KAGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChh------------HHHHHh-hcCCCEEEecCCCHHHHHHHHHh
Confidence 345566665 345577788888888877665544322 112222 236889999999974 47878
Q ss_pred cCccccccccCc-hhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhc
Q 046605 366 EAVGGFVTHCGW-NSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 366 ~~~~~~I~HGG~-gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
+++-++-+.-|. -++.||+++|+|+|+....+ ....+ +.-+.|..+.. -+.+++.++|.++++
T Consensus 262 ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~----------~~~~~la~~i~~l~~ 325 (351)
T cd03804 262 ARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE----------QTVESLAAAVERFEK 325 (351)
T ss_pred CCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC----------CCHHHHHHHHHHHHh
Confidence 887333334443 35789999999999976433 33445 35567887764 378899999999998
No 98
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.23 E-value=0.0015 Score=64.58 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCCcEeeccc--ch---HhhhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecc
Q 046605 348 GKGLIIRGWA--PQ---VLILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGI 418 (487)
Q Consensus 348 ~~nv~~~~~v--p~---~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~ 418 (487)
.+++.+..+. ++ ..+++.+++ |+.- |-..++.||+++|+|+|+-... .....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4567777776 43 346777887 6642 2244999999999999986532 333445 3545566442
Q ss_pred cccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 046605 419 QKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLS 483 (487)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~ 483 (487)
+.+++..+|.++++ +++.++...+-+ ++.+.+..+....+.++++.++
T Consensus 323 -----------~~~~~a~~i~~ll~---~~~~~~~~~~~a---~~~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 -----------TVEEAAVRILYLLR---DPELRRKMGANA---REHVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred -----------CcHHHHHHHHHHHc---CHHHHHHHHHHH---HHHHHHHcCHHHHHHHHHHHHH
Confidence 34577789999997 555443332222 2222334455555566655543
No 99
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.23 E-value=0.0065 Score=64.43 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=50.3
Q ss_pred CCCcEeeccc-ch---Hhhhcc----cCcccccc----ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEe
Q 046605 348 GKGLIIRGWA-PQ---VLILDH----EAVGGFVT----HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIG 415 (487)
Q Consensus 348 ~~nv~~~~~v-p~---~~ll~~----~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~ 415 (487)
.++|.+.++. +. .+++.+ +++ ||. =+-.-++.||+++|+|+|+--. ...+..+ +.-.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEE
Confidence 3567777664 32 234432 234 553 2334599999999999998543 3455566 35456877
Q ss_pred ecccccccccCCccCHHHHHHHHHHHh
Q 046605 416 VGIQKWCRIVGDFVKREAIVKAVNEIM 442 (487)
Q Consensus 416 l~~~~~~~~~~~~~~~~~l~~~i~~ll 442 (487)
++. -+++++.++|.+++
T Consensus 691 Vdp----------~D~eaLA~aL~~ll 707 (784)
T TIGR02470 691 IDP----------YHGEEAAEKIVDFF 707 (784)
T ss_pred eCC----------CCHHHHHHHHHHHH
Confidence 764 47889999998876
No 100
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=0.00017 Score=68.62 Aligned_cols=144 Identities=18% Similarity=0.138 Sum_probs=90.5
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHH----hcCCcEEEEecCCCCCCCcccccccCchhHHHHhc-CCCcEee---ccc
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLE----ASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRME-GKGLIIR---GWA 357 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~----~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~---~~v 357 (487)
+..+++|+=--.+.. +.+..+.+++. +. ..+...++-+... .+. +-.....+ .+++.+. +|.
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~~----~v~----e~~~~~L~~~~~v~li~pl~~~ 273 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPRP----RVR----ELVLKRLKNVERVKLIDPLGYL 273 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCCh----hhh----HHHHHHhCCCCcEEEeCCcchH
Confidence 448888864444433 44555555444 33 3555666655431 111 11112222 3467665 456
Q ss_pred chHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHH
Q 046605 358 PQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKA 437 (487)
Q Consensus 358 p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~ 437 (487)
+...++.++.+ ++|-.|. -.-||-..|+|++++=...++|. ++ ..|.-+.+ ..+.+.|.++
T Consensus 274 ~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v--~agt~~lv-----------g~~~~~i~~~ 334 (383)
T COG0381 274 DFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV--EAGTNILV-----------GTDEENILDA 334 (383)
T ss_pred HHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce--ecCceEEe-----------CccHHHHHHH
Confidence 67778988876 8888764 57899999999999999999995 33 33444333 3677999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHH
Q 046605 438 VNEIMMGDRAEEMRSRAKAFGEMA 461 (487)
Q Consensus 438 i~~ll~~~~~~~~~~~a~~l~~~~ 461 (487)
+.++++ ++++.+|++...--.
T Consensus 335 ~~~ll~---~~~~~~~m~~~~npY 355 (383)
T COG0381 335 ATELLE---DEEFYERMSNAKNPY 355 (383)
T ss_pred HHHHhh---ChHHHHHHhcccCCC
Confidence 999998 667776655444333
No 101
>PLN02949 transferase, transferring glycosyl groups
Probab=98.17 E-value=0.0037 Score=63.26 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=51.2
Q ss_pred CCCcEeecccchHh---hhcccCcccccc---ccCch-hHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFVT---HCGWN-SILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
.++|.+..++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+ .....|...-..
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV-~~~~~g~tG~l~- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIV-LDEDGQQTGFLA- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceee-ecCCCCcccccC-
Confidence 56899999998654 6777776 552 23444 799999999999998754311 0111 111012111111
Q ss_pred cccccCCccCHHHHHHHHHHHhc
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
-+.+++.++|.++++
T Consensus 407 --------~~~~~la~ai~~ll~ 421 (463)
T PLN02949 407 --------TTVEEYADAILEVLR 421 (463)
T ss_pred --------CCHHHHHHHHHHHHh
Confidence 278999999999996
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.17 E-value=0.0024 Score=65.09 Aligned_cols=130 Identities=12% Similarity=0.128 Sum_probs=72.4
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHh---cCCcEEEEecCCCCCCCcccccccCchhHHHHh--cCCCcEe-ecccch
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEA---SGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM--EGKGLII-RGWAPQ 359 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~-~~~vp~ 359 (487)
+.++++..|.... .+.+..++++++. .+.++++.-.+.. . +.+.++... .+.++.+ ..|-..
T Consensus 281 ~~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~~------~----~~~~l~~l~~~~~~~v~~~~g~~~~ 348 (466)
T PRK00654 281 DAPLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGDP------E----LEEAFRALAARYPGKVGVQIGYDEA 348 (466)
T ss_pred CCcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCcH------H----HHHHHHHHHHHCCCcEEEEEeCCHH
Confidence 3456667777653 3334444555443 3667766633321 1 111222211 1344543 455322
Q ss_pred --HhhhcccCcccccc---ccCch-hHHHHhhcCCcEeccCccccchhhHHHHH-----HHhhceEeecccccccccCCc
Q 046605 360 --VLILDHEAVGGFVT---HCGWN-SILEGVTAGVPLVTWPVYAEQFYNEKIVN-----EVLKIGIGVGIQKWCRIVGDF 428 (487)
Q Consensus 360 --~~ll~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~-----~~~G~G~~l~~~~~~~~~~~~ 428 (487)
..++..+++ ++. +-|.| +..||+.+|+|.|+....+ ....+. +..+.|..++.
T Consensus 349 ~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v~~~~~~~~~~~G~lv~~---------- 412 (466)
T PRK00654 349 LAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTVIDYNPEDGEATGFVFDD---------- 412 (466)
T ss_pred HHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----ccceeecCCCCCCCCceEEeCC----------
Confidence 246788887 553 34554 8889999999999865321 121220 12266877764
Q ss_pred cCHHHHHHHHHHHhc
Q 046605 429 VKREAIVKAVNEIMM 443 (487)
Q Consensus 429 ~~~~~l~~~i~~ll~ 443 (487)
-++++|.++|.++++
T Consensus 413 ~d~~~la~~i~~~l~ 427 (466)
T PRK00654 413 FNAEDLLRALRRALE 427 (466)
T ss_pred CCHHHHHHHHHHHHH
Confidence 488999999999885
No 103
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.17 E-value=0.00043 Score=69.15 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=48.1
Q ss_pred eecccchHhhhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCc
Q 046605 353 IRGWAPQVLILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDF 428 (487)
Q Consensus 353 ~~~~vp~~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~ 428 (487)
+..+.+..+++...++ ||.- |=..++.||+++|+|+|+.-... + ..+ ..-+-|...
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~------------ 347 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY------------ 347 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec------------
Confidence 4455556678888887 7665 44668999999999999976443 2 333 232333222
Q ss_pred cCHHHHHHHHHHHhc
Q 046605 429 VKREAIVKAVNEIMM 443 (487)
Q Consensus 429 ~~~~~l~~~i~~ll~ 443 (487)
-+.+++.+++.++|+
T Consensus 348 ~~~~~~a~ai~~~l~ 362 (462)
T PLN02846 348 DDGKGFVRATLKALA 362 (462)
T ss_pred CCHHHHHHHHHHHHc
Confidence 257799999999987
No 104
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.09 E-value=0.0019 Score=66.06 Aligned_cols=132 Identities=9% Similarity=0.048 Sum_probs=71.6
Q ss_pred cEEEEeccCcccCCHHHHHHHHHHHH---hcCCcEEEEecCCCCCCCcccccccCchhHHHHhc--CCCcEeecccch--
Q 046605 287 SVVYICFGSVANFTSAQLMEIAMGLE---ASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRME--GKGLIIRGWAPQ-- 359 (487)
Q Consensus 287 ~~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~~~~~vp~-- 359 (487)
..+++..|.... .+.+..++++++ +.+.++++.-.+.. . +-+.+.+... ..|+.+....++
T Consensus 296 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~------~----~~~~~~~~~~~~~~~v~~~~~~~~~~ 363 (476)
T cd03791 296 APLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVILGSGDP------E----YEEALRELAARYPGRVAVLIGYDEAL 363 (476)
T ss_pred CCEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEEEecCCH------H----HHHHHHHHHHhCCCcEEEEEeCCHHH
Confidence 356667777663 233444444443 34556555543322 1 1112222111 466765433343
Q ss_pred -HhhhcccCccccccc---cCc-hhHHHHhhcCCcEeccCccc--cchhhHHHHHHHhhceEeecccccccccCCccCHH
Q 046605 360 -VLILDHEAVGGFVTH---CGW-NSILEGVTAGVPLVTWPVYA--EQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKRE 432 (487)
Q Consensus 360 -~~ll~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~--DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~ 432 (487)
..++..+++ ++.- -|. .+..||+++|+|+|+-...+ |--.....- ...|.|..+.. .+.+
T Consensus 364 ~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~----------~~~~ 430 (476)
T cd03791 364 AHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG----------YNAD 430 (476)
T ss_pred HHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC----------CCHH
Confidence 246777887 5532 233 37789999999999765432 211111111 12347887764 4789
Q ss_pred HHHHHHHHHhc
Q 046605 433 AIVKAVNEIMM 443 (487)
Q Consensus 433 ~l~~~i~~ll~ 443 (487)
+|.++|.++++
T Consensus 431 ~l~~~i~~~l~ 441 (476)
T cd03791 431 ALLAALRRALA 441 (476)
T ss_pred HHHHHHHHHHH
Confidence 99999999885
No 105
>PLN00142 sucrose synthase
Probab=98.03 E-value=0.0036 Score=66.36 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=36.7
Q ss_pred cCch-hHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHh
Q 046605 375 CGWN-SILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIM 442 (487)
Q Consensus 375 GG~g-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll 442 (487)
-|.| ++.||+++|+|+|+-.. ......+ +.-.-|..++.. +++++.++|.+++
T Consensus 677 EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~LV~P~----------D~eaLA~aI~~lL 730 (815)
T PLN00142 677 EAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFHIDPY----------HGDEAANKIADFF 730 (815)
T ss_pred cCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEeCCC----------CHHHHHHHHHHHH
Confidence 4544 89999999999988543 4455555 344458777643 6788888876654
No 106
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=4.9e-05 Score=60.21 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=70.8
Q ss_pred EEEeccCcccCCHHHHH--HHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEee--cccc-hHhhh
Q 046605 289 VYICFGSVANFTSAQLM--EIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIR--GWAP-QVLIL 363 (487)
Q Consensus 289 v~vs~Gs~~~~~~~~~~--~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~--~~vp-~~~ll 363 (487)
+|||-||....=...+. ++..-.+.-..++|+.+|.... .| -.+.++. ++-+ ...+.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~----------kp--------vagl~v~~F~~~~kiQsli 63 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI----------KP--------VAGLRVYGFDKEEKIQSLI 63 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc----------cc--------ccccEEEeechHHHHHHHh
Confidence 78999998541111111 1222223334589999998653 22 0223443 4444 45577
Q ss_pred cccCccccccccCchhHHHHhhcCCcEeccCccc--------cchhhHHHHHHHhhceEeec
Q 046605 364 DHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYA--------EQFYNEKIVNEVLKIGIGVG 417 (487)
Q Consensus 364 ~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~--------DQ~~~a~rv~~~~G~G~~l~ 417 (487)
.++++ +|+|+|.||++.++..++|.|++|--. .|-..|..++ +.+.=....
T Consensus 64 ~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~s 122 (161)
T COG5017 64 HDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACS 122 (161)
T ss_pred hcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEc
Confidence 77776 999999999999999999999999532 4777888885 766665554
No 107
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.01 E-value=0.00021 Score=70.74 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=91.9
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHH-hcCCCcEeecccchHhhh
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKR-MEGKGLIIRGWAPQVLIL 363 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~vp~~~ll 363 (487)
+..++|.+|......+++.+..+.+.|++.+.-.+|........ ++. +-+.++.. ...+.+.+..+.++.+.|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--~~~----l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG--EAR----LRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--HHH----HHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--HHH----HHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 45599999999999999999999999999999999987654321 011 11112111 124567777777755443
Q ss_pred ---cccCccc-cccccCchhHHHHhhcCCcEeccCccc-cchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHH
Q 046605 364 ---DHEAVGG-FVTHCGWNSILEGVTAGVPLVTWPVYA-EQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAV 438 (487)
Q Consensus 364 ---~~~~~~~-~I~HGG~gs~~eal~~GvP~l~~P~~~-DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i 438 (487)
...++-| -...+|..|++|||+.|||+|.+|--. =...-|..+ +.+|+.--+- .+.++-.+.-
T Consensus 357 ~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA-----------~s~~eYv~~A 424 (468)
T PF13844_consen 357 RRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA-----------DSEEEYVEIA 424 (468)
T ss_dssp HHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB------------SSHHHHHHHH
T ss_pred HHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC-----------CCHHHHHHHH
Confidence 4455522 346788999999999999999999422 123334556 5777775442 3556655555
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 046605 439 NEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLS 483 (487)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~ 483 (487)
-++-+ |++++ +.+++++++++...-- -+...++++|+
T Consensus 425 v~La~---D~~~l---~~lR~~Lr~~~~~SpL--fd~~~~ar~lE 461 (468)
T PF13844_consen 425 VRLAT---DPERL---RALRAKLRDRRSKSPL--FDPKRFARNLE 461 (468)
T ss_dssp HHHHH----HHHH---HHHHHHHHHHHHHSGG--G-HHHHHHHHH
T ss_pred HHHhC---CHHHH---HHHHHHHHHHHhhCCC--CCHHHHHHHHH
Confidence 56665 55555 3344455444333222 22355555554
No 108
>PLN02316 synthase/transferase
Probab=97.93 E-value=0.039 Score=60.36 Aligned_cols=118 Identities=12% Similarity=0.020 Sum_probs=70.6
Q ss_pred CCcEeecccchH---hhhcccCcccccc----ccCchhHHHHhhcCCcEeccCccc--cchhhH----HHHHHH---hhc
Q 046605 349 KGLIIRGWAPQV---LILDHEAVGGFVT----HCGWNSILEGVTAGVPLVTWPVYA--EQFYNE----KIVNEV---LKI 412 (487)
Q Consensus 349 ~nv~~~~~vp~~---~ll~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~--DQ~~~a----~rv~~~---~G~ 412 (487)
+++.+....+.. .++..+++ |+. =+=.-+.+||+++|+|.|+-...+ |.-... .+. +. -+-
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~-~~~g~~~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERA-QAQGLEPN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccc-cccccCCc
Confidence 456665444542 47877887 663 232448999999999988765422 211110 111 11 135
Q ss_pred eEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Q 046605 413 GIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 413 G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~~ 484 (487)
|.... ..+++.|..+|.+++. .|.+....+++..+++++..-|-...+.+.++-.+.
T Consensus 977 Gflf~----------~~d~~aLa~AL~raL~-----~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 977 GFSFD----------GADAAGVDYALNRAIS-----AWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred eEEeC----------CCCHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 66664 4589999999999997 444455556666666666666655555555544443
No 109
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=0.0093 Score=56.94 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=111.1
Q ss_pred hcHHHHHHHHHHhCCceEEec-cccCCCcCchhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHH
Q 046605 230 LEHAYADHYRKALGRRAWHIG-PVSLCNRNFEDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIA 308 (487)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~ 308 (487)
+|+++++ ..+-+..||| |+....+ ...+++...+-+....+++++.+-.||-.+.-...+..+.
T Consensus 146 FE~~~y~----k~g~~~~yVGHpl~d~i~-----------~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~ 210 (381)
T COG0763 146 FEPAFYD----KFGLPCTYVGHPLADEIP-----------LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFV 210 (381)
T ss_pred CCHHHHH----hcCCCeEEeCChhhhhcc-----------ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHH
Confidence 4555443 2344589999 5433221 1113445555555555677999999998763334455555
Q ss_pred HHHHhc-----CCcEEEEecCCCCCCCcccccccCchhHHH-HhcCCCcEeecccc--h-HhhhcccCccccccccCchh
Q 046605 309 MGLEAS-----GQNFIWVVRKNKNNGGEEEKEDWLPEGFEK-RMEGKGLIIRGWAP--Q-VLILDHEAVGGFVTHCGWNS 379 (487)
Q Consensus 309 ~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~~~~~vp--~-~~ll~~~~~~~~I~HGG~gs 379 (487)
++.+.+ +.+++.-+...... .... ..++......-++. + .+++..+++ .+.-+| .-
T Consensus 211 ~a~~~l~~~~~~~~~vlp~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSG-T~ 275 (381)
T COG0763 211 QAAQELKARYPDLKFVLPLVNAKYR------------RIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASG-TA 275 (381)
T ss_pred HHHHHHHhhCCCceEEEecCcHHHH------------HHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhcc-HH
Confidence 555543 45777765554311 1111 11122111222222 1 336777776 444444 35
Q ss_pred HHHHhhcCCcEeccCcc-ccchhhHHHHHHHh------------hceEeecccccccccCCccCHHHHHHHHHHHhcCc-
Q 046605 380 ILEGVTAGVPLVTWPVY-AEQFYNEKIVNEVL------------KIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGD- 445 (487)
Q Consensus 380 ~~eal~~GvP~l~~P~~-~DQ~~~a~rv~~~~------------G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~- 445 (487)
++|+..+|+|||+.=-. .=-...|++.+ .. .+...+-.. ..+++.|.+++..++.+.
T Consensus 276 tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEliq~--------~~~pe~la~~l~~ll~~~~ 346 (381)
T COG0763 276 TLEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELIQE--------DCTPENLARALEELLLNGD 346 (381)
T ss_pred HHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchHHHhh--------hcCHHHHHHHHHHHhcChH
Confidence 78999999999875311 00122233332 11 122222222 689999999999999822
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 046605 446 RAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDL 482 (487)
Q Consensus 446 ~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l 482 (487)
.-..+++..+.+.+.++ ++++++.+.+-+++-+
T Consensus 347 ~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 347 RREALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred hHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 11355566666666555 5556555555444433
No 110
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.82 E-value=0.005 Score=61.79 Aligned_cols=78 Identities=15% Similarity=0.014 Sum_probs=52.4
Q ss_pred CCCcEeecccchHh---hhcccCccccccc---cC-chhHHHHhhcCCcEeccCccccchhhHHHHHH---HhhceEeec
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFVTH---CG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNE---VLKIGIGVG 417 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~---~~G~G~~l~ 417 (487)
.++|.+.+++|+.+ +|..+++ +|+- -| .-++.||+++|+|+|+.-..+.- ...+ + .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEe-
Confidence 46899999998654 7777777 4431 12 34889999999999976543211 1122 2 23456542
Q ss_pred ccccccccCCccCHHHHHHHHHHHhc
Q 046605 418 IQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
. +++++.++|.++++
T Consensus 377 ----------~-d~~~la~ai~~ll~ 391 (419)
T cd03806 377 ----------S-TAEEYAEAIEKILS 391 (419)
T ss_pred ----------C-CHHHHHHHHHHHHh
Confidence 2 78999999999997
No 111
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.64 E-value=0.00087 Score=58.05 Aligned_cols=89 Identities=19% Similarity=0.277 Sum_probs=64.5
Q ss_pred CCCcEeecccch---HhhhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQ---VLILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~---~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
..++.+..++++ ..++..+++ +|+. |...++.||+.+|+|+|+- |...+...+ ...+.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC--
Confidence 468889999982 458888887 7766 6677999999999999974 455556666 46666887764
Q ss_pred cccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHH
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKA 456 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 456 (487)
.+.+++.++|.++++ +++.++++.+
T Consensus 143 --------~~~~~l~~~i~~~l~---~~~~~~~l~~ 167 (172)
T PF00534_consen 143 --------NDIEELADAIEKLLN---DPELRQKLGK 167 (172)
T ss_dssp --------TSHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHC---CHHHHHHHHH
Confidence 399999999999998 6654444433
No 112
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.63 E-value=0.082 Score=52.17 Aligned_cols=77 Identities=18% Similarity=0.136 Sum_probs=51.9
Q ss_pred CCCcEeecccchHh---hhcccCccccc------cccCc-hhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeec
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFV------THCGW-NSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVG 417 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I------~HGG~-gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~ 417 (487)
.+||.+.+++|+.+ .+.++++.++- +.++. ..+.|++++|+|+|+.+. ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 47999999999655 57778873321 23333 358999999999998762 2223 2333 33332
Q ss_pred ccccccccCCccCHHHHHHHHHHHhc
Q 046605 418 IQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
.-+.+++.++|.+++.
T Consensus 324 ----------~~d~~~~~~ai~~~l~ 339 (373)
T cd04950 324 ----------ADDPEEFVAAIEKALL 339 (373)
T ss_pred ----------CCCHHHHHHHHHHHHh
Confidence 2379999999999875
No 113
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.51 E-value=0.003 Score=63.12 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=95.7
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHhc-----CCcEEEEecCCCCCCCcccccccCchhHHHH----hcCCCcEeecc
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEAS-----GQNFIWVVRKNKNNGGEEEKEDWLPEGFEKR----MEGKGLIIRGW 356 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~nv~~~~~ 356 (487)
++..+++.|.... .+.+..+++++..+ +.++.|..-+.... -+.+... ...+++.+.+|
T Consensus 229 ~~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~----------~~~l~~~~~~~~~~~~V~f~G~ 296 (407)
T cd04946 229 DTLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGPL----------EDTLKELAESKPENISVNFTGE 296 (407)
T ss_pred CCEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH----------HHHHHHHHHhcCCCceEEEecC
Confidence 3466677777764 23344455555432 24666665444321 1122211 12456889999
Q ss_pred cchHh---hhcccCcccccccc----CchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCcc
Q 046605 357 APQVL---ILDHEAVGGFVTHC----GWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFV 429 (487)
Q Consensus 357 vp~~~---ll~~~~~~~~I~HG----G~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~ 429 (487)
+++.+ ++..+++.+||... -..++.||+++|+|+|+-. .......+ +..+.|..+.. ..
T Consensus 297 v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i-~~~~~G~l~~~---------~~ 362 (407)
T cd04946 297 LSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIV-DNGGNGLLLSK---------DP 362 (407)
T ss_pred CChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHh-cCCCcEEEeCC---------CC
Confidence 99764 44444443465433 2558999999999999854 33455556 45447877754 35
Q ss_pred CHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 046605 430 KREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLI 479 (487)
Q Consensus 430 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 479 (487)
+.+++.++|.++++ |+..++ ++++..++.+++.-+...+..+++
T Consensus 363 ~~~~la~~I~~ll~---~~~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 363 TPNELVSSLSKFID---NEEEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred CHHHHHHHHHHHHh---CHHHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 88999999999997 555433 344444444455566556555554
No 114
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.42 E-value=0.0091 Score=58.83 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=58.6
Q ss_pred CCCcEeecccch-HhhhcccCccccccc--cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccc
Q 046605 348 GKGLIIRGWAPQ-VLILDHEAVGGFVTH--CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRI 424 (487)
Q Consensus 348 ~~nv~~~~~vp~-~~ll~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~ 424 (487)
.+++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..+..
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------
Confidence 456778777765 458888888555554 33568999999999999864321 123344 35567777754
Q ss_pred cCCccCHHHHHHHHHHHhc
Q 046605 425 VGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 425 ~~~~~~~~~l~~~i~~ll~ 443 (487)
-+.+++.++|.++++
T Consensus 330 ----~d~~~la~~i~~ll~ 344 (372)
T cd04949 330 ----GDIEALAEAIIELLN 344 (372)
T ss_pred ----CcHHHHHHHHHHHHc
Confidence 489999999999998
No 115
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.28 E-value=0.075 Score=54.32 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=61.4
Q ss_pred CCCcEeecccchHhhhcccCccccccc----cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHh------hceEeec
Q 046605 348 GKGLIIRGWAPQVLILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVL------KIGIGVG 417 (487)
Q Consensus 348 ~~nv~~~~~vp~~~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~------G~G~~l~ 417 (487)
.+||.+.+...-.++++.+++ +|.- |--.++.||+++|+|+|+- |.......+ +.. ..|..+.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 477888886656778888887 4422 4456899999999999984 444445555 342 2677765
Q ss_pred ccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHH
Q 046605 418 IQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRA 454 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a 454 (487)
. .+.+++.++|.++++ |+..++++
T Consensus 426 ~----------~d~~~la~ai~~ll~---~~~~~~~~ 449 (475)
T cd03813 426 P----------ADPEALARAILRLLK---DPELRRAM 449 (475)
T ss_pred C----------CCHHHHHHHHHHHhc---CHHHHHHH
Confidence 4 489999999999998 55544443
No 116
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.26 E-value=0.0074 Score=58.17 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=77.2
Q ss_pred CCcEEEEeccCccc---CCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeec--ccch
Q 046605 285 PNSVVYICFGSVAN---FTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRG--WAPQ 359 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~--~vp~ 359 (487)
+++.|.+..|+... .+.+.+.++++.+.+.++++++..++.... + ..+.+... -++..+.+ -+++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~----~----~~~~i~~~--~~~~~l~g~~sL~e 247 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEK----Q----RAERIAEA--LPGAVVLPKMSLAE 247 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHH----H----HHHHHHhh--CCCCeecCCCCHHH
Confidence 35566666665433 578888899998877688887765543210 1 11122211 11222322 2334
Q ss_pred -HhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHH
Q 046605 360 -VLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAV 438 (487)
Q Consensus 360 -~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i 438 (487)
.++++++++ +|+. -.|.++=|...|+|+|++=-.. +..+. .-+|-...+-.. +.-..++++++.+++
T Consensus 248 l~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t----~p~~~-~P~~~~~~~~~~----~~~~~I~~~~V~~ai 315 (319)
T TIGR02193 248 VAALLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGAT----DPGRT-GGYGKPNVALLG----ESGANPTPDEVLAAL 315 (319)
T ss_pred HHHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCC----CHhhc-ccCCCCceEEcc----CccCCCCHHHHHHHH
Confidence 558888887 8886 6788999999999998762111 12211 011111111000 001289999999999
Q ss_pred HHHh
Q 046605 439 NEIM 442 (487)
Q Consensus 439 ~~ll 442 (487)
+++|
T Consensus 316 ~~~~ 319 (319)
T TIGR02193 316 EELL 319 (319)
T ss_pred HhhC
Confidence 8875
No 117
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.25 E-value=0.016 Score=57.37 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=72.6
Q ss_pred CCCcEeecccchHh---hhcccCcccccc----ccCc-hhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeeccc
Q 046605 348 GKGLIIRGWAPQVL---ILDHEAVGGFVT----HCGW-NSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQ 419 (487)
Q Consensus 348 ~~nv~~~~~vp~~~---ll~~~~~~~~I~----HGG~-gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~ 419 (487)
..++.+.+++|+.+ +++.+++ +|. +.|. .++.||+++|+|+|+... ..+...+ +.-..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv-~~~~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFV-LEGITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhc-ccCCceEEEeC-
Confidence 46788889998544 5888888 553 2443 577899999999999764 2344455 35556765532
Q ss_pred ccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 046605 420 KWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLS 483 (487)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~ 483 (487)
..+.+++.++|.++++ |++.+ ++++..++...+.-+.....+++.+.|+
T Consensus 328 --------~~d~~~la~~I~~ll~---d~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 328 --------PMTSDSIISDINRTLA---DPELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred --------CCCHHHHHHHHHHHHc---CHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3589999999999998 55543 2333333333344555555555555543
No 118
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.20 E-value=0.29 Score=48.86 Aligned_cols=115 Identities=11% Similarity=0.086 Sum_probs=65.8
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHHhcCCcEE-EEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccc-h---Hhh
Q 046605 288 VVYICFGSVANFTSAQLMEIAMGLEASGQNFI-WVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAP-Q---VLI 362 (487)
Q Consensus 288 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i-~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp-~---~~l 362 (487)
.+++..|.....+.+....+++|+..++.++- +..|..... . .+++....+.. + .++
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~---------~---------~~~v~~~g~~~~~~~l~~~ 303 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF---------T---------AGNVVNHGFETDKRKLMSA 303 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc---------c---------ccceEEecCcCCHHHHHHH
Confidence 34444554332233445778888887755443 334432211 1 23455555543 2 335
Q ss_pred hcccCcccccc----ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHH
Q 046605 363 LDHEAVGGFVT----HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAV 438 (487)
Q Consensus 363 l~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i 438 (487)
++.+++ ||. -|-..++.||+++|+|+|+-...+ ....+ ..+-|..+... +.++|.+++
T Consensus 304 y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv--~~~~G~lv~~~----------d~~~La~~~ 365 (405)
T PRK10125 304 LNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL--QKSGGKTVSEE----------EVLQLAQLS 365 (405)
T ss_pred HHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE--eCCcEEEECCC----------CHHHHHhcc
Confidence 555666 554 344568999999999999987654 22233 23568877653 777787654
No 119
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.20 E-value=0.00048 Score=52.81 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=47.8
Q ss_pred ChhhHhhhhcCCCCCcEEEEeccCcccC---C--HHHHHHHHHHHHhcCCcEEEEecCCCC
Q 046605 272 DEQECLKWLNSKQPNSVVYICFGSVANF---T--SAQLMEIAMGLEASGQNFIWVVRKNKN 327 (487)
Q Consensus 272 ~~~~~~~~l~~~~~~~~v~vs~Gs~~~~---~--~~~~~~~~~a~~~~~~~~i~~~~~~~~ 327 (487)
.+..+..|+...+.++.|+||+||.... . ...+..++++++.+|..+|.+++....
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 3567788999999999999999999873 2 247899999999999999999998764
No 120
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.06 E-value=0.1 Score=46.82 Aligned_cols=50 Identities=24% Similarity=0.263 Sum_probs=36.2
Q ss_pred CCCcEeecccch----HhhhcccCccccccccC----chhHHHHhhcCCcEeccCccccc
Q 046605 348 GKGLIIRGWAPQ----VLILDHEAVGGFVTHCG----WNSILEGVTAGVPLVTWPVYAEQ 399 (487)
Q Consensus 348 ~~nv~~~~~vp~----~~ll~~~~~~~~I~HGG----~gs~~eal~~GvP~l~~P~~~DQ 399 (487)
..|+.+.++++. ..++..+++ +|+-.. .+++.||+.+|+|+|+-+..+.+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 467888888632 224444776 776665 78999999999999998865443
No 121
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.04 E-value=0.49 Score=48.53 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=63.5
Q ss_pred CCCcEeecccchHhhhcccCcccccc---ccC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeeccccccc
Q 046605 348 GKGLIIRGWAPQVLILDHEAVGGFVT---HCG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCR 423 (487)
Q Consensus 348 ~~nv~~~~~vp~~~ll~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 423 (487)
.++|...++.+..+++..+++ +|. .-| .-++.||+++|+|+|+.-..+ .....+ +.-.-|..+....
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~--- 445 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDE--- 445 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCc---
Confidence 466888888888889998887 553 233 458999999999999865421 233344 3434576665210
Q ss_pred ccCCccC-HHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Q 046605 424 IVGDFVK-REAIVKAVNEIMMGDRAEEMRSRAKAFGEM 460 (487)
Q Consensus 424 ~~~~~~~-~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~ 460 (487)
+.++.-+ .++|.++|.++++.+.-..|.++|.+.++.
T Consensus 446 ~~~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~ 483 (500)
T TIGR02918 446 EEDDEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEG 483 (500)
T ss_pred cccchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh
Confidence 0000112 788999999999611123344555444433
No 122
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.01 E-value=0.005 Score=59.73 Aligned_cols=112 Identities=16% Similarity=0.302 Sum_probs=78.4
Q ss_pred CCCcEeecccchHhhhcc--cCccccccc-------cCc------hhHHHHhhcCCcEeccCccccchhhHHHHHHHhhc
Q 046605 348 GKGLIIRGWAPQVLILDH--EAVGGFVTH-------CGW------NSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKI 412 (487)
Q Consensus 348 ~~nv~~~~~vp~~~ll~~--~~~~~~I~H-------GG~------gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~ 412 (487)
.+||...+|+|+.++... .+..++... |.. +-+.+.+++|+|+|+. ++...+..| ++.++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENGL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCCc
Confidence 468999999998775432 133222211 111 1267789999999984 567778888 69999
Q ss_pred eEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 046605 413 GIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIED 481 (487)
Q Consensus 413 G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 481 (487)
|+.++ +.+++.+++.++.. +.-..|++|+++++++++ .|.....++.+++..
T Consensus 281 G~~v~------------~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 281 GFVVD------------SLEELPEIIDNITE-EEYQEMVENVKKISKLLR----NGYFTKKALVDAIKE 332 (333)
T ss_pred eEEeC------------CHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHhc
Confidence 99984 34688888887653 223568999999999998 677777777776653
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.94 E-value=0.0029 Score=52.26 Aligned_cols=79 Identities=24% Similarity=0.270 Sum_probs=50.5
Q ss_pred CCCcEeecccch-HhhhcccCccccccc---cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeeccccccc
Q 046605 348 GKGLIIRGWAPQ-VLILDHEAVGGFVTH---CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCR 423 (487)
Q Consensus 348 ~~nv~~~~~vp~-~~ll~~~~~~~~I~H---GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~ 423 (487)
.+|+.+.+|++. .++++.+++.+..+. |-.+++.|++.+|+|+|+.+. .....+ +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEE-C-----
Confidence 468999999974 558888888655442 234899999999999999776 122233 356788777 3
Q ss_pred ccCCccCHHHHHHHHHHHhc
Q 046605 424 IVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 424 ~~~~~~~~~~l~~~i~~ll~ 443 (487)
-+++++.++|.++++
T Consensus 120 -----~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 120 -----NDPEELAEAIERLLN 134 (135)
T ss_dssp -----T-HHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhc
Confidence 389999999999986
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.88 E-value=0.0086 Score=49.71 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAI 88 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~ 88 (487)
||++++.....| ...+++.|.++||+|++++.....+..... .++.+..++.+ ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~---------~k~---- 56 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSP---------RKS---- 56 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCC---------CCc----
Confidence 577777666555 557899999999999999996554232221 26777766421 000
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc---chHHHHHHhC-CCeEEEe
Q 046605 89 TNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP---WATDAAAKFG-IPRLVFH 147 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~---~~~~~A~~~g-iP~v~~~ 147 (487)
. ...+. .. .+.++++..+||+|.+..... .+..++...+ +|+|...
T Consensus 57 -~---~~~~~--------~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 57 -P---LNYIK--------YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred -c---HHHHH--------HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 0 12211 12 678899999999998777554 2344567788 8888553
No 125
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.86 E-value=0.3 Score=47.72 Aligned_cols=108 Identities=19% Similarity=0.114 Sum_probs=70.2
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCccee-EEEeeCCCccCCCCCCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLSRSIQKASELGIELD-VKIIKFPSAEAGLPEGW 82 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~-~~~i~~~~~~~~~~~~~ 82 (487)
.++||||+-....|++.-..++.++|.++ +.+|++++.+.+.+.++.. ..++ ++.++ . .
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~--~-----~--- 65 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIK--N-----K--- 65 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEec--c-----c---
Confidence 57889999999999999999999999998 8999999998877766543 1332 22221 0 0
Q ss_pred cccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEE
Q 046605 83 ENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVF 146 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 146 (487)
.. .. ...+.. ...+...++..++|++|.-....-...++...|.|..+-
T Consensus 66 ~~----~~---~~~~~~--------~~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 66 KA----GA---SEKIKN--------FFSLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred cc----cH---HHHHHH--------HHHHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 00 00 011111 113345566779999996554444455677778776543
No 126
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.86 E-value=0.23 Score=46.03 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccchhhhhH
Q 046605 15 FLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAITNEVNR 94 (487)
Q Consensus 15 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (487)
.+-.-|+.-+-.|-++|.++||+|.+.+-+.- .+.+.+.. .+|.+.++. ..+..+.. .
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~-----ygf~~~~Ig--------k~g~~tl~---~---- 64 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDL-----YGFPYKSIG--------KHGGVTLK---E---- 64 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHH-----hCCCeEeec--------ccCCccHH---H----
Confidence 44556888899999999999999988776422 22222211 267777663 11111111 0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEech
Q 046605 95 ELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~ 149 (487)
....... ..-.|-+++.+++||+.|. -.++-+..+|..+|+|.|.+.-.
T Consensus 65 Kl~~~~e-----R~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 65 KLLESAE-----RVYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHHHH-----HHHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 1222211 1236788889999999999 56777888999999999998654
No 127
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.022 Score=56.83 Aligned_cols=109 Identities=19% Similarity=0.238 Sum_probs=79.4
Q ss_pred CCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHH-hcCCCcEeecccchHh-
Q 046605 284 QPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKR-MEGKGLIIRGWAPQVL- 361 (487)
Q Consensus 284 ~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~vp~~~- 361 (487)
+++-+||++|+-.....++.+...++-++..+--++|..++... +.++..+-+.+++. ...+.+++.+-.|..+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~----~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD----AEINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc----HHHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 35679999999999999999999999999999999999998643 23332122111111 1245677777666443
Q ss_pred --hhcccCccccc---cccCchhHHHHhhcCCcEeccCccccch
Q 046605 362 --ILDHEAVGGFV---THCGWNSILEGVTAGVPLVTWPVYAEQF 400 (487)
Q Consensus 362 --ll~~~~~~~~I---~HGG~gs~~eal~~GvP~l~~P~~~DQ~ 400 (487)
=+.-+++ |. --||..|+.|+|..|||+|..+ ++|+
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 3333555 44 4699999999999999999998 7776
No 128
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.50 E-value=0.39 Score=46.79 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCccee-EEEeeCCCccCCCCCCCccc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLSRSIQKASELGIELD-VKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~-~~~i~~~~~~~~~~~~~~~~ 85 (487)
||||+-....|++.-..++.++|.++ +.+|++++.+.+.+.++.. ..++ +..++. ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~---------~~~-- 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDR---------KKA-- 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeCh---------hhh--
Confidence 68999999999999999999999997 8999999998877666544 1332 222210 000
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEE
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVF 146 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 146 (487)
... .. .+.. . -.+...++..++|++|.-........++...|.|..+-
T Consensus 62 --~~~---~~---~~~~----~-~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 62 --KAG---ER---KLAN----Q-FHLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred --cch---HH---HHHH----H-HHHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 000 00 0111 1 12344566779999997655555667888889986543
No 129
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.43 E-value=0.0066 Score=51.34 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccchhhhhHHHHHHHHH
Q 046605 23 PTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAITNEVNRELIVKFYM 102 (487)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
-+..|+++|.++||+|++++.......-+. ...++.+..++.+... .... . ...+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-------~~~~---~---~~~~----- 60 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEE-------EEDGVRVHRLPLPRRP-------WPLR---L---LRFL----- 60 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SE-------EETTEEEEEE--S-SS-------SGGG---H---CCHH-----
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccc-------ccCCceEEeccCCccc-------hhhh---h---HHHH-----
Confidence 467899999999999999997655442211 1236777777643211 1110 0 1111
Q ss_pred HHHhhhHHHHHHH--hhCCCCEEEeCCCCc-chHHHHH-HhCCCeEEEe
Q 046605 103 ATTKLQKPLEQLL--QEHKPDCLVADMFFP-WATDAAA-KFGIPRLVFH 147 (487)
Q Consensus 103 ~~~~~~~~l~~~l--~~~~pDlVI~D~~~~-~~~~~A~-~~giP~v~~~ 147 (487)
..+.+++ ++.+||+|.+..... ....++. ..++|+|...
T Consensus 61 ------~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 61 ------RRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp ------HHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred ------HHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 2334444 678999999887432 2233444 7899998763
No 130
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.31 E-value=1.8 Score=45.49 Aligned_cols=74 Identities=16% Similarity=0.031 Sum_probs=50.2
Q ss_pred CcEeecccchH-hhhcccCcccccc----ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccc
Q 046605 350 GLIIRGWAPQV-LILDHEAVGGFVT----HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRI 424 (487)
Q Consensus 350 nv~~~~~vp~~-~ll~~~~~~~~I~----HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~ 424 (487)
++.+.++.++. +++..+++ ||. -|=..++.||+++|+|+|+.-..+... + ..|.+..+.
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V--~~g~nGll~------- 665 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F--RSFPNCLTY------- 665 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E--eecCCeEec-------
Confidence 35566676654 48888887 654 233568999999999999987654221 2 123232221
Q ss_pred cCCccCHHHHHHHHHHHhc
Q 046605 425 VGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 425 ~~~~~~~~~l~~~i~~ll~ 443 (487)
-+.+++.++|.++|+
T Consensus 666 ----~D~EafAeAI~~LLs 680 (794)
T PLN02501 666 ----KTSEDFVAKVKEALA 680 (794)
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 368999999999997
No 131
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.01 E-value=0.34 Score=49.49 Aligned_cols=114 Identities=11% Similarity=0.136 Sum_probs=70.6
Q ss_pred CCCcEeecccch-HhhhcccCcccccc---ccC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccc
Q 046605 348 GKGLIIRGWAPQ-VLILDHEAVGGFVT---HCG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWC 422 (487)
Q Consensus 348 ~~nv~~~~~vp~-~~ll~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 422 (487)
.++|.+.+|..+ ..+|..+++ ||. .-| ..++.||+++|+|+|+-.. ..+...+ +.-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC---
Confidence 477888888764 457888888 764 344 5699999999999997654 3455566 455678777643
Q ss_pred cccCCccCHHHHHHHH---HHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Q 046605 423 RIVGDFVKREAIVKAV---NEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 423 ~~~~~~~~~~~l~~~i---~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~~ 484 (487)
+.+.+.+++ .++.+ ..+....+++..++.+++.-+...-+++..+-+.+
T Consensus 524 -------D~~aLa~ai~lA~aL~~------ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 524 -------QTVNLDQACRYAEKLVN------LWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred -------ChhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 445555554 22332 11122234444444445566666666666666554
No 132
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.92 E-value=0.89 Score=42.73 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=39.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCCccchhhh
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRG--VKASVITTPGNAPHLSRS 53 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~v~~~ 53 (487)
|||++-....|++.-+.++.++|+++. -+|++++.+...+.++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 689999999999999999999999984 899999999877766654
No 133
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.90 E-value=0.14 Score=52.29 Aligned_cols=162 Identities=11% Similarity=0.046 Sum_probs=86.1
Q ss_pred cEEEEeccCcccCCHHHHHHHHHHHH---hcCCcEEEEecCCCCCCCcccccccCchhHHHHh--cCCCcEeecccchH-
Q 046605 287 SVVYICFGSVANFTSAQLMEIAMGLE---ASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM--EGKGLIIRGWAPQV- 360 (487)
Q Consensus 287 ~~v~vs~Gs~~~~~~~~~~~~~~a~~---~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~vp~~- 360 (487)
.++++..|.... .+.+..+++++. +.+.++++.-.+.. . +.+.+.... .+.++.+....+..
T Consensus 291 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~------~----~~~~l~~~~~~~~~~v~~~~~~~~~~ 358 (473)
T TIGR02095 291 VPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGDP------E----LEEALRELAERYPGNVRVIIGYDEAL 358 (473)
T ss_pred CCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCCH------H----HHHHHHHHHHHCCCcEEEEEcCCHHH
Confidence 356666677664 222334444444 33556665543321 1 111222111 23556665555543
Q ss_pred --hhhcccCcccccc---ccCch-hHHHHhhcCCcEeccCccccchhhHHHHHHHh------hceEeecccccccccCCc
Q 046605 361 --LILDHEAVGGFVT---HCGWN-SILEGVTAGVPLVTWPVYAEQFYNEKIVNEVL------KIGIGVGIQKWCRIVGDF 428 (487)
Q Consensus 361 --~ll~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~------G~G~~l~~~~~~~~~~~~ 428 (487)
.++..+++ ++. +-|.| +..||+.+|+|+|+-...+ ....+ +.- +.|..+..
T Consensus 359 ~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~---------- 421 (473)
T TIGR02095 359 AHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEE---------- 421 (473)
T ss_pred HHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCC----------
Confidence 47777887 553 23444 7889999999999865432 22223 222 67877754
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 046605 429 VKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDL 482 (487)
Q Consensus 429 ~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l 482 (487)
.++++|.++|.++++ .+.++-..+++..++++++.-|-...++++++-.
T Consensus 422 ~d~~~la~~i~~~l~-----~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~Y 470 (473)
T TIGR02095 422 YDPGALLAALSRALR-----LYRQDPSLWEALQKNAMSQDFSWDKSAKQYVELY 470 (473)
T ss_pred CCHHHHHHHHHHHHH-----HHhcCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 488999999999885 2221122222222333345555555555555443
No 134
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.89 E-value=1.2 Score=43.42 Aligned_cols=104 Identities=20% Similarity=0.159 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
|||||+-..+.|++.-..++.++|+++ +.+|++++.+.+.+.++.. ..++-.. .++ .. ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi-~~~-------~~-~~- 62 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAI-PMP-------LG-HG- 62 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEE-ecc-------cc-cc-
Confidence 579999999999999999999999997 8999999998877766654 1232211 111 00 00
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEE
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLV 145 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~ 145 (487)
...+.. ...+...++..++|++|.=....-...++...|+|.-.
T Consensus 63 --------~~~~~~--------~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 --------ALEIGE--------RRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred --------hhhhHH--------HHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000000 11344566777999998765545455677777887554
No 135
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.84 E-value=0.26 Score=49.17 Aligned_cols=181 Identities=13% Similarity=0.164 Sum_probs=101.3
Q ss_pred HhhhhcCCCCCcEEEEeccCcccC------C-H---HHHHHHHHHHHhcCCcEEEEecCCCC---CCCcccccccCchhH
Q 046605 276 CLKWLNSKQPNSVVYICFGSVANF------T-S---AQLMEIAMGLEASGQNFIWVVRKNKN---NGGEEEKEDWLPEGF 342 (487)
Q Consensus 276 ~~~~l~~~~~~~~v~vs~Gs~~~~------~-~---~~~~~~~~a~~~~~~~~i~~~~~~~~---~~~~~~~~~~lp~~~ 342 (487)
+..|+.....+++|-||.-..... . . +.+..+++.+.+.|+++++..-.... .+++.. ....+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~----~~~~l 299 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRM----VALNL 299 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHH----HHHHH
Confidence 344555434456888886544311 1 1 23444555555569998876543110 000011 11122
Q ss_pred HHHhc-CCCcEe-e-cccch--HhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEe-e
Q 046605 343 EKRME-GKGLII-R-GWAPQ--VLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIG-V 416 (487)
Q Consensus 343 ~~~~~-~~nv~~-~-~~vp~--~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~-l 416 (487)
.+.+. +.++.+ . .+-+. ..+++++++ +|..= +-++.-|+..|||.+.+++ | +-....+ +.+|..-. .
T Consensus 300 ~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~ 372 (426)
T PRK10017 300 RQHVSDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAI 372 (426)
T ss_pred HHhcccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEe
Confidence 22222 222332 2 23343 368888776 77542 3356778999999999996 4 3444456 58888866 5
Q ss_pred cccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 046605 417 GIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLS 483 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~ 483 (487)
+.. +++.++|.+.+.++++ + .+.+++..++--+++++ + +.+.+.++++.+-
T Consensus 373 ~~~--------~l~~~~Li~~v~~~~~-~-r~~~~~~l~~~v~~~r~---~---~~~~~~~~~~~~~ 423 (426)
T PRK10017 373 DIR--------HLLDGSLQAMVADTLG-Q-LPALNARLAEAVSRERQ---T---GMQMVQSVLERIG 423 (426)
T ss_pred chh--------hCCHHHHHHHHHHHHh-C-HHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHhc
Confidence 555 8899999999999997 2 24566655555555542 1 2244566665543
No 136
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.46 E-value=0.16 Score=51.33 Aligned_cols=125 Identities=19% Similarity=0.231 Sum_probs=80.0
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHH-HhcCCCcEeecccchHh--
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEK-RMEGKGLIIRGWAPQVL-- 361 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~~~~~vp~~~-- 361 (487)
+.-+||.+|--...++|+.+..+++-|++.+.-++|.....-.. +.++.. -.+. -.+++.|.+.+-++..+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g--e~rf~t----y~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG--EQRFRT----YAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc--hHHHHH----HHHHhCCCccceeeccccchHHHH
Confidence 34589999988888999999999999999999999998865432 122211 0000 11356676666655333
Q ss_pred ---hhcccCccccccccCchhHHHHhhcCCcEeccCccccchhh-HHHHHHHhhceEeec
Q 046605 362 ---ILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYN-EKIVNEVLKIGIGVG 417 (487)
Q Consensus 362 ---ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~-a~rv~~~~G~G~~l~ 417 (487)
.|..-.+.-+.|. |..|..+.|+.|||||.+|.-.--... +..+ -..|+|--+.
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hlia 888 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLIA 888 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHHh
Confidence 2322222224554 688999999999999999953322222 2234 3678886443
No 137
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.36 E-value=1.6 Score=42.29 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=66.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCccee-EEEeeCCCccCCCCCCCccc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLSRSIQKASELGIELD-VKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~-~~~i~~~~~~~~~~~~~~~~ 85 (487)
||||+-..+.|++.-..++.++|.++ +.+|++++.+.+.+.++.. ..++ ++.++ .. ..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~---------~~-~~- 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMP---------LG-HG- 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecC---------Cc-cc-
Confidence 68999999999999999999999987 8999999998766655543 1222 11111 00 00
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeE
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRL 144 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v 144 (487)
. .. +.. ...+.+.++..++|++|.-....-...++...|+|.-
T Consensus 62 ----~---~~-~~~--------~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 62 ----A---LE-LTE--------RRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred ----c---hh-hhH--------HHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 0 01 000 1134455667799999987655555556777788754
No 138
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.23 E-value=0.24 Score=42.42 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=33.5
Q ss_pred hhhHHHHHHHhh-CCCCEEEeCCCCcchHHHHHHh-CCCeEEEec
Q 046605 106 KLQKPLEQLLQE-HKPDCLVADMFFPWATDAAAKF-GIPRLVFHG 148 (487)
Q Consensus 106 ~~~~~l~~~l~~-~~pDlVI~D~~~~~~~~~A~~~-giP~v~~~~ 148 (487)
.....+.++.++ +.||+||..+-.-.+..+-+.+ ++|.+.+.-
T Consensus 52 av~~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 52 AVARAARQLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 344555565555 8999999998877888899999 899998743
No 139
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.16 E-value=2.2 Score=41.26 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
+|||+++-....|++.-.+++-+.|.++ +.++++++.+.+.+.++.. ..++-... .....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~----------~~~~~ 62 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVII----------IDKKK 62 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhcc----------ccccc
Confidence 5889999999999999999999999998 5999999998877665543 11211111 00000
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEE
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVF 146 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 146 (487)
. . .. -.-...+.+.++..++|+||.=.-..=...++...++|.-.-
T Consensus 63 ~---------~--~~-----~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 63 K---------G--LG-----LKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred c---------c--cc-----hHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 0 0 00 001235666677779999998766664555666778776543
No 140
>PRK14098 glycogen synthase; Provisional
Probab=95.09 E-value=0.47 Score=48.62 Aligned_cols=83 Identities=12% Similarity=0.001 Sum_probs=53.4
Q ss_pred CCCcEeecccchH---hhhcccCccccccc---cCc-hhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAPQV---LILDHEAVGGFVTH---CGW-NSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp~~---~ll~~~~~~~~I~H---GG~-gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
+.++.+...++.. .+++.+++ |+.- -|. .+.+||+.+|+|.|+....+-........ +.-+-|.....
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~~-- 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFHD-- 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeCC--
Confidence 4678888888763 57888887 5532 232 37789999999988876532111111111 12356776653
Q ss_pred cccccCCccCHHHHHHHHHHHhc
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
.++++|.++|.++++
T Consensus 436 --------~d~~~la~ai~~~l~ 450 (489)
T PRK14098 436 --------YTPEALVAKLGEALA 450 (489)
T ss_pred --------CCHHHHHHHHHHHHH
Confidence 579999999998774
No 141
>PHA01633 putative glycosyl transferase group 1
Probab=94.82 E-value=0.53 Score=45.32 Aligned_cols=101 Identities=12% Similarity=0.031 Sum_probs=59.6
Q ss_pred CCCcEee---cccchH---hhhcccCccccccc----cCchhHHHHhhcCCcEeccCc------cccc------hhhHHH
Q 046605 348 GKGLIIR---GWAPQV---LILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPV------YAEQ------FYNEKI 405 (487)
Q Consensus 348 ~~nv~~~---~~vp~~---~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~------~~DQ------~~~a~r 405 (487)
.+++.+. +++++. ++++.+++ |+.- |=..++.||+++|+|+|+--. .+|+ .++...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4578777 455543 56777887 6642 334578999999999998632 2332 223322
Q ss_pred HHH-HhhceEeecccccccccCCccCHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHH
Q 046605 406 VNE-VLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMM-GDRAEEMRSRAKAFGEMA 461 (487)
Q Consensus 406 v~~-~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~a~~l~~~~ 461 (487)
.+. ..|.|...+ ..+++++.++|.+++. .+ .+....++++.++++
T Consensus 278 ~~~~~~g~g~~~~----------~~d~~~la~ai~~~~~~~~-~~~~~~~~~~~a~~f 324 (335)
T PHA01633 278 YYDKEHGQKWKIH----------KFQIEDMANAIILAFELQD-REERSMKLKELAKKY 324 (335)
T ss_pred hcCcccCceeeec----------CCCHHHHHHHHHHHHhccC-hhhhhHHHHHHHHhc
Confidence 211 234554443 5799999999999965 22 123334444444444
No 142
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.80 E-value=0.26 Score=43.39 Aligned_cols=120 Identities=22% Similarity=0.243 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc-c
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL-D 86 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~-~ 86 (487)
||||+..--+. +---+..|+++|.+.||+|+++.+...+.-...... ....++......+. ...+.... -
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit----~~~pl~~~~~~~~~----~~~~~~~~~v 71 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSIT----LHKPLRVTEVEPGH----DPGGVEAYAV 71 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS------SSSEEEEEEEE-TT----CCSTTEEEEE
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeec----CCCCeEEEEEEecc----cCCCCCEEEE
Confidence 67888875555 445688999999878899999999876654433311 12244443332100 01111111 0
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCC----------CCc---chHHHHHHhCCCeEEEech
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADM----------FFP---WATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~----------~~~---~~~~~A~~~giP~v~~~~~ 149 (487)
+... -+.. .-.+..++...+|||||+-. ++. .+..-|...|||.|.+|..
T Consensus 72 ~GTP---aDcv----------~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 72 SGTP---ADCV----------KLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp SS-H---HHHH----------HHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCcH---HHHH----------HHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 1111 1211 22455566666799999632 222 3455567789999999764
No 143
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.77 E-value=0.6 Score=35.34 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=53.5
Q ss_pred ccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHH
Q 046605 374 HCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSR 453 (487)
Q Consensus 374 HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 453 (487)
+|-..-+.|++.+|+|+|.-.. ......+ .-|.....- . +.+++.++|..+++ |+..++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~----~~~~~~~~~--------~-~~~el~~~i~~ll~---~~~~~~- 67 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF----EDGEHIITY--------N-DPEELAEKIEYLLE---NPEERR- 67 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc----CCCCeEEEE--------C-CHHHHHHHHHHHHC---CHHHHH-
Confidence 5556689999999999998875 2222222 223223222 3 89999999999998 555433
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 046605 454 AKAFGEMAKRAVENGGSSSSNLNSLIE 480 (487)
Q Consensus 454 a~~l~~~~~~a~~~~g~~~~~~~~~~~ 480 (487)
++++..++-+++..+....++++++
T Consensus 68 --~ia~~a~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 68 --RIAKNARERVLKRHTWEHRAEQILE 92 (92)
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 3333333334567777777776653
No 144
>PHA01630 putative group 1 glycosyl transferase
Probab=93.20 E-value=1.4 Score=42.59 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=58.6
Q ss_pred ccchHh---hhcccCccccccc-cC-chhHHHHhhcCCcEeccCccc--cch---hhHHHHHH-----------HhhceE
Q 046605 356 WAPQVL---ILDHEAVGGFVTH-CG-WNSILEGVTAGVPLVTWPVYA--EQF---YNEKIVNE-----------VLKIGI 414 (487)
Q Consensus 356 ~vp~~~---ll~~~~~~~~I~H-GG-~gs~~eal~~GvP~l~~P~~~--DQ~---~~a~rv~~-----------~~G~G~ 414 (487)
++|+.+ ++..+++-++-+. .| ..++.||+++|+|+|+.-..+ |.- .|+.-+ + -.++|.
T Consensus 197 ~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~G~ 275 (331)
T PHA01630 197 PLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHVGY 275 (331)
T ss_pred cCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCccccc
Confidence 366433 6777887222222 22 558999999999999976432 211 111111 0 023454
Q ss_pred eecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 046605 415 GVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLS 483 (487)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~ 483 (487)
.+. .+.+++.+++.++|...+++..+++...-+.... +..+-....+++.+-++
T Consensus 276 ~v~-----------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 276 FLD-----------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILE 329 (331)
T ss_pred ccC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHh
Confidence 332 3567788888888872112345544443333322 34444455555555544
No 145
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.10 E-value=0.55 Score=40.10 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 17 AHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 17 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
..|--.-+..|+++|.++||+|+++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 345556788999999999999999988643
No 146
>PLN02939 transferase, transferring glycosyl groups
Probab=92.15 E-value=3.2 Score=45.36 Aligned_cols=84 Identities=7% Similarity=0.058 Sum_probs=53.2
Q ss_pred CCCcEeecccchH---hhhcccCccccccc----cCchhHHHHhhcCCcEeccCccc--cchhh--HHHHHHHhhceEee
Q 046605 348 GKGLIIRGWAPQV---LILDHEAVGGFVTH----CGWNSILEGVTAGVPLVTWPVYA--EQFYN--EKIVNEVLKIGIGV 416 (487)
Q Consensus 348 ~~nv~~~~~vp~~---~ll~~~~~~~~I~H----GG~gs~~eal~~GvP~l~~P~~~--DQ~~~--a~rv~~~~G~G~~l 416 (487)
.++|.+..+.+.. .+++.+++ ||.- +-..+..||+.+|+|.|+....+ |--.. ...+.+.-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 4568888887754 47888887 6642 22448999999999999876533 21110 11110122456665
Q ss_pred cccccccccCCccCHHHHHHHHHHHhc
Q 046605 417 GIQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
.. .+++.|.++|.++++
T Consensus 914 ~~----------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT----------PDEQGLNSALERAFN 930 (977)
T ss_pred cC----------CCHHHHHHHHHHHHH
Confidence 43 488899999988874
No 147
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.54 E-value=3.3 Score=35.64 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=60.6
Q ss_pred EcCCCCCChHHHHHHHHHH-HhC-CCeEEEEeCCCCccch--hhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccc
Q 046605 13 FPFLAHGHMIPTVDMAKLF-TTR-GVKASVITTPGNAPHL--SRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAI 88 (487)
Q Consensus 13 ~~~~~~GH~~p~l~La~~L-~~r-Gh~Vt~~~~~~~~~~v--~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~ 88 (487)
+..++-||+.=|+.|.+.+ .++ .++..+++..+....- ++.... .+....+..+| +....
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~---~~~~~~~~~~~-------------r~r~v 66 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS---SSKRHKILEIP-------------RAREV 66 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh---ccccceeeccc-------------eEEEe
Confidence 4467889999999999999 344 4555556655443221 111000 01011222222 11111
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHh------CCCeEEEec
Q 046605 89 TNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP--WATDAAAKF------GIPRLVFHG 148 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~------giP~v~~~~ 148 (487)
.. .........+.... ....++...+||+||+...-. ..+.+|..+ |.+.|.+-+
T Consensus 67 ~q----~~~~~~~~~l~~~~-~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 67 GQ----SYLTSIFTTLRAFL-QSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred ch----hhHhhHHHHHHHHH-HHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 11 11112222222222 223344556899999998655 456688999 999998854
No 148
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=90.10 E-value=4.1 Score=38.84 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=86.0
Q ss_pred CcEEEEeccCcccCCHHHHHHHHHHHHh---cCCcEEEEecCCCCCCCcccccccCchhHHHH-hcCCCcEe-ecccc--
Q 046605 286 NSVVYICFGSVANFTSAQLMEIAMGLEA---SGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKR-MEGKGLII-RGWAP-- 358 (487)
Q Consensus 286 ~~~v~vs~Gs~~~~~~~~~~~~~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~-~~~vp-- 358 (487)
+..+.|=.|-.+..++..++. ++++.+ .+.++++=.+-+..+ +++...+- ....+ ....|+.+ .+++|
T Consensus 183 ~~~ltILvGNSgd~sNnHiea-L~~L~~~~~~~~kIivPLsYg~~n---~~Yi~~V~-~~~~~lF~~~~~~iL~e~mpf~ 257 (360)
T PF07429_consen 183 KGKLTILVGNSGDPSNNHIEA-LEALKQQFGDDVKIIVPLSYGANN---QAYIQQVI-QAGKELFGAENFQILTEFMPFD 257 (360)
T ss_pred CCceEEEEcCCCCCCccHHHH-HHHHHHhcCCCeEEEEECCCCCch---HHHHHHHH-HHHHHhcCccceeEhhhhCCHH
Confidence 345666677777644443333 233332 345666655543211 12221111 11111 12357764 57888
Q ss_pred -hHhhhcccCccccccc--cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHH
Q 046605 359 -QVLILDHEAVGGFVTH--CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIV 435 (487)
Q Consensus 359 -~~~ll~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~ 435 (487)
+.++|..|++..|+|. =|.|++.-.|+.|+|++.-- +-..-.-+ ++.|+=+.-..+ +++...|+
T Consensus 258 eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~----~np~~~~l-~~~~ipVlf~~d--------~L~~~~v~ 324 (360)
T PF07429_consen 258 EYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR----DNPFWQDL-KEQGIPVLFYGD--------ELDEALVR 324 (360)
T ss_pred HHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec----CChHHHHH-HhCCCeEEeccc--------cCCHHHHH
Confidence 5679999999766664 58999999999999998643 33333455 366777766666 89999999
Q ss_pred HHHHHHhc
Q 046605 436 KAVNEIMM 443 (487)
Q Consensus 436 ~~i~~ll~ 443 (487)
++=+++.+
T Consensus 325 ea~rql~~ 332 (360)
T PF07429_consen 325 EAQRQLAN 332 (360)
T ss_pred HHHHHHhh
Confidence 99998876
No 149
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.43 E-value=5.2 Score=36.46 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=63.4
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccccc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDA 87 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~ 87 (487)
||||+..--+ =|---+..|+++|. .+++|+++.+...+.-+....... ..++...+.. ..-....
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~----~Plr~~~~~~---------~~~av~G 65 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLH----EPLRVRQVDN---------GAYAVNG 65 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccc----cCceeeEecc---------ceEEecC
Confidence 4666665322 12233678889998 999999999987665544332111 1222222210 0000011
Q ss_pred chhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCC----------CCc---chHHHHHHhCCCeEEEech
Q 046605 88 ITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADM----------FFP---WATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~----------~~~---~~~~~A~~~giP~v~~~~~ 149 (487)
.+. +. ..-.+..++++..||+||+.. .+. +|..=|..+|+|.|.+|..
T Consensus 66 TPa----DC----------V~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 66 TPA----DC----------VILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ChH----HH----------HHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 111 22 233677788888899999642 222 3444477789999999764
No 150
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.54 E-value=14 Score=34.13 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=63.4
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCc-
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWE- 83 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~- 83 (487)
.++||||+..--+.-- --+..|+++|.+.| +|+++.+...+.-...... .+..+++..+.. .....
T Consensus 3 ~~~M~ILltNDDGi~a-~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait----~~~pl~~~~~~~-------~~~~~~ 69 (257)
T PRK13932 3 DKKPHILVCNDDGIEG-EGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMT----LGVPLRIKEYQK-------NNRFFG 69 (257)
T ss_pred CCCCEEEEECCCCCCC-HHHHHHHHHHHhCC-CEEEEcCCCCCCCCccccc----CCCCeEEEEEcc-------CCCceE
Confidence 4567999887433211 34778999998888 7999988766544433311 233455555421 00110
Q ss_pred c-cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCC----------CC---cchHHHHHHhCCCeEEEec
Q 046605 84 N-LDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADM----------FF---PWATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 84 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~----------~~---~~~~~~A~~~giP~v~~~~ 148 (487)
. ....+. +.. .-.+..++. .+||+||+-. ++ .++..-|..+|||.|.+|.
T Consensus 70 y~v~GTPa----DCV----------~lal~~~~~-~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 70 YTVSGTPV----DCI----------KVALSHILP-EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred EEEcCcHH----HHH----------HHHHHhhcC-CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 0 111111 221 112333332 4799999642 22 2345557778999999975
No 151
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.38 E-value=2.6 Score=35.51 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
..+|||++.-.|+-|-..-.+.|+..|.++|+.|-=+.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV 44 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV 44 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence 457899999999999999999999999999999875555443
No 152
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=88.22 E-value=8.7 Score=35.33 Aligned_cols=41 Identities=7% Similarity=0.035 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
||||+..--+. |---+..|+++|.+ +|+|+++.+...+.-.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSAS 41 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 57888763322 11227889999965 6899999987665543
No 153
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=88.08 E-value=6 Score=40.38 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=28.3
Q ss_pred eEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 8 LHIFFFPFL------AHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 8 ~~Il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
|||++++.- .-|=-.-.-.|+++|+++||+|.++++..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 578888733 12333446789999999999999999754
No 154
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=87.70 E-value=2.3 Score=39.66 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
+...|.+.-.|+.|--.-.-.|.++|.++||+|-++.-++....-.-.. .|.+++...+... ..-..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi-----LGDRiRM~~~~~~--------~~vFi 116 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI-----LGDRIRMQRLAVD--------PGVFI 116 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc-----cccHhhHHhhccC--------CCeEE
Confidence 4457788889999999999999999999999999997665443322111 2444444433210 00111
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEE
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVF 146 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~ 146 (487)
..++. ...+..+.+. -.+...+++...+|+||++..-. .=..++....+=.+.+
T Consensus 117 Rs~~s---rG~lGGlS~a----t~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 117 RSSPS---RGTLGGLSRA----TREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred eecCC---CccchhhhHH----HHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEe
Confidence 12222 1222232222 23566777788999999996544 2345666666544433
No 155
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=87.50 E-value=0.63 Score=37.19 Aligned_cols=40 Identities=13% Similarity=-0.037 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCC---ChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 046605 8 LHIFFFPFLAHG---HMIPTVDMAKLFTTRGVKASVITTPGNA 47 (487)
Q Consensus 8 ~~Il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~~~ 47 (487)
|||+|+.-|-.+ .-...++|+.+-++|||+|.+++...+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 688898877444 4467899999999999999999986553
No 156
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=86.81 E-value=15 Score=34.60 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=81.9
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHH-hcC--CcEEEEecCCCCCCCcccccccCchhHHHH----hcCCCcEe-ecccc-
Q 046605 288 VVYICFGSVANFTSAQLMEIAMGLE-ASG--QNFIWVVRKNKNNGGEEEKEDWLPEGFEKR----MEGKGLII-RGWAP- 358 (487)
Q Consensus 288 ~v~vs~Gs~~~~~~~~~~~~~~a~~-~~~--~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~nv~~-~~~vp- 358 (487)
.+-|=.|-.+..++..++ +++++. ..+ .+++.-.+-...+ +++.. .++.. ...+++.+ .+++|
T Consensus 146 ~~tIlvGNSgd~SN~Hie-~L~~l~~~~~~~v~ii~PlsYp~gn---~~Yi~----~V~~~~~~lF~~~~~~~L~e~l~f 217 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIE-ALRALHQQFGDNVKIIVPMGYPANN---QAYIE----EVRQAGLALFGAENFQILTEKLPF 217 (322)
T ss_pred ceEEEEeCCCCCcccHHH-HHHHHHHHhCCCeEEEEECCcCCCC---HHHHH----HHHHHHHHhcCcccEEehhhhCCH
Confidence 455666766654444443 334443 334 4666555542111 22221 22221 12367654 56777
Q ss_pred --hHhhhcccCccccccc--cCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHH
Q 046605 359 --QVLILDHEAVGGFVTH--CGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAI 434 (487)
Q Consensus 359 --~~~ll~~~~~~~~I~H--GG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l 434 (487)
+.++|+.|++..|+|+ =|.||+.-.++.|+|+++-- +-+.|.. +. +.|+-+-.+.+ .++...+
T Consensus 218 ~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~-e~gv~Vlf~~d--------~L~~~~v 284 (322)
T PRK02797 218 DDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LT-EQGLPVLFTGD--------DLDEDIV 284 (322)
T ss_pred HHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HH-hCCCeEEecCC--------cccHHHH
Confidence 6779999999877775 58999999999999998753 3344443 42 66777665666 8898888
Q ss_pred HHHHHHHhc
Q 046605 435 VKAVNEIMM 443 (487)
Q Consensus 435 ~~~i~~ll~ 443 (487)
.++=+++..
T Consensus 285 ~e~~rql~~ 293 (322)
T PRK02797 285 REAQRQLAS 293 (322)
T ss_pred HHHHHHHHh
Confidence 887666543
No 157
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=85.96 E-value=7.3 Score=35.99 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=27.8
Q ss_pred HHHHHHhhCCCCEEEeCCCCcc------hHHHHHHhCCCeEEE
Q 046605 110 PLEQLLQEHKPDCLVADMFFPW------ATDAAAKFGIPRLVF 146 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~~------~~~~A~~~giP~v~~ 146 (487)
.+.+++++.++|+||--.+-++ +..+|+.+|||++.+
T Consensus 56 ~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 56 ELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4667778889998885544332 566899999999998
No 158
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=85.81 E-value=1.5 Score=36.11 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=39.5
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPH 49 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 49 (487)
|++.+|++.+.++-+|-.-..-++..|..+|++|+++...--.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~ 45 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEE 45 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 578899999999999999999999999999999999987544333
No 159
>PRK14099 glycogen synthase; Provisional
Probab=84.93 E-value=14 Score=37.77 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=30.8
Q ss_pred CCceEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 5 ICQLHIFFFPFL------AHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 5 ~~~~~Il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
|++|||++++.- +-|=-.-+-+|.++|+++||+|.++++..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 367999999722 22333456788999999999999999854
No 160
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=84.64 E-value=30 Score=32.49 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=51.6
Q ss_pred CCCcEeecccc---hHhhhcccCccccccc---cCchh-HHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccc
Q 046605 348 GKGLIIRGWAP---QVLILDHEAVGGFVTH---CGWNS-ILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQK 420 (487)
Q Consensus 348 ~~nv~~~~~vp---~~~ll~~~~~~~~I~H---GG~gs-~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~ 420 (487)
.+++....+++ ...++..+++ ++.- .|.|. +.||+++|+|+|.-. .......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceE-ecCC-
Confidence 36788888888 2336666665 5544 35544 599999999996654 33333334 2333466 4332
Q ss_pred cccccCCccCHHHHHHHHHHHhc
Q 046605 421 WCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 421 ~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
.+.+++.+++..+++
T Consensus 327 --------~~~~~~~~~i~~~~~ 341 (381)
T COG0438 327 --------GDVEELADALEQLLE 341 (381)
T ss_pred --------CCHHHHHHHHHHHhc
Confidence 268999999999997
No 161
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=84.63 E-value=24 Score=35.53 Aligned_cols=133 Identities=6% Similarity=0.055 Sum_probs=81.8
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhcC-CcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEee-cccc-h-H
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEASG-QNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIR-GWAP-Q-V 360 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~-~~vp-~-~ 360 (487)
.+.++++| +.+.++.+....++++ +++=...+.. ..+.+..-.+.+|++.. .+.+ + .
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te------------~s~kL~~L~~y~nvvly~~~~~~~l~ 342 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE------------MSSKLMSLDKYDNVKLYPNITTQKIQ 342 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc------------ccHHHHHHHhcCCcEEECCcChHHHH
Confidence 34477776 2555666666666553 3443333322 11223222234677655 4566 3 5
Q ss_pred hhhcccCccccccccC--chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHH
Q 046605 361 LILDHEAVGGFVTHCG--WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAV 438 (487)
Q Consensus 361 ~ll~~~~~~~~I~HGG--~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i 438 (487)
+++..|++-+-|+||+ ..++.||+.+|+|++..=...... ..+ .. |-... .-+.+++.++|
T Consensus 343 ~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~~----------~~~~~~m~~~i 405 (438)
T TIGR02919 343 ELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIFE----------HNEVDQLISKL 405 (438)
T ss_pred HHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---Cceec----------CCCHHHHHHHH
Confidence 6999999999999987 669999999999999876442221 222 12 43343 34789999999
Q ss_pred HHHhcCchHH-HHHHHHHH
Q 046605 439 NEIMMGDRAE-EMRSRAKA 456 (487)
Q Consensus 439 ~~ll~~~~~~-~~~~~a~~ 456 (487)
.++|+ ++ .++++...
T Consensus 406 ~~lL~---d~~~~~~~~~~ 421 (438)
T TIGR02919 406 KDLLN---DPNQFRELLEQ 421 (438)
T ss_pred HHHhc---CHHHHHHHHHH
Confidence 99998 55 34444433
No 162
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=84.35 E-value=18 Score=33.25 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSR 52 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 52 (487)
||||+..--+. |---+..|+++|.+. |+|+++.+...+.-+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ 43 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASH 43 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcc
Confidence 46777763332 223378899999988 79999999866554443
No 163
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.15 E-value=4.8 Score=37.45 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=57.4
Q ss_pred eecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccc--hhhHHHHHHHhhceEeecccccccccCCccC
Q 046605 353 IRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQ--FYNEKIVNEVLKIGIGVGIQKWCRIVGDFVK 430 (487)
Q Consensus 353 ~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ--~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~ 430 (487)
+.+|-...++|.++++ .|--.|- .+-+++-.|+|+|.+|-.+-| +..|.|=.+-+|+.+.+-.. .
T Consensus 299 ~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~----------~ 365 (412)
T COG4370 299 WLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP----------E 365 (412)
T ss_pred EEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC----------c
Confidence 3456666777777776 4443332 344578899999999999998 45666553445777777543 3
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 046605 431 REAIVKAVNEIMMGDRAEEMRSRAKAFG 458 (487)
Q Consensus 431 ~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 458 (487)
++.-..+..++|. |+.+.+++++=.
T Consensus 366 aq~a~~~~q~ll~---dp~r~~air~nG 390 (412)
T COG4370 366 AQAAAQAVQELLG---DPQRLTAIRHNG 390 (412)
T ss_pred hhhHHHHHHHHhc---ChHHHHHHHhcc
Confidence 3333333444887 778877777443
No 164
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=82.96 E-value=13 Score=32.98 Aligned_cols=35 Identities=3% Similarity=-0.056 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRG--VKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~ 44 (487)
|+||+|+..+.-+ .+.+|.+++.+.+ ++|.++.+.
T Consensus 1 m~ki~vl~sg~gs---~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGS---NLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCCh---hHHHHHHHHHcCCCCcEEEEEEec
Confidence 5889999887633 3446777777664 777776444
No 165
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=82.66 E-value=21 Score=29.81 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=71.2
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccC
Q 046605 288 VVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (487)
Q Consensus 288 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~ 367 (487)
.|.|-+||.+ +....+++...|+..+..+-..+.+-.. .|+.+.+ ++...+- ..++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR----------~p~~l~~-----------~~~~~~~-~~~~ 57 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR----------TPERLLE-----------FVKEYEA-RGAD 57 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT----------SHHHHHH-----------HHHHTTT-TTES
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC----------CHHHHHH-----------HHHHhcc-CCCE
Confidence 5667777776 5777888888899888665554444321 4443321 1111000 1223
Q ss_pred ccccccccCc----hhHHHHhhcCCcEeccCccccchh----hHHHHHHHhhceEeecccccccccCCccCHHHHHHHHH
Q 046605 368 VGGFVTHCGW----NSILEGVTAGVPLVTWPVYAEQFY----NEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVN 439 (487)
Q Consensus 368 ~~~~I~HGG~----gs~~eal~~GvP~l~~P~~~DQ~~----~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~ 439 (487)
+ ||.=.|. .++..++. -.|+|.+|....+.. ....+.--.|+++..-.- ++-.++..+.-.|.
T Consensus 58 v--iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i------~~~~nAA~~A~~IL 128 (150)
T PF00731_consen 58 V--IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI------NNGFNAALLAARIL 128 (150)
T ss_dssp E--EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS------THHHHHHHHHHHHH
T ss_pred E--EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc------cCchHHHHHHHHHH
Confidence 3 7776664 34555544 799999998765432 222220022565544321 01344444444443
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHH
Q 046605 440 EIMMGDRAEEMRSRAKAFGEMAKR 463 (487)
Q Consensus 440 ~ll~~~~~~~~~~~a~~l~~~~~~ 463 (487)
.+ . |++++++.+..++++++
T Consensus 129 a~-~---d~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 129 AL-K---DPELREKLRAYREKMKE 148 (150)
T ss_dssp HT-T----HHHHHHHHHHHHHHHH
T ss_pred hc-C---CHHHHHHHHHHHHHHHc
Confidence 32 2 68999999999998884
No 166
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=82.55 E-value=25 Score=32.50 Aligned_cols=42 Identities=10% Similarity=0.036 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLS 51 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 51 (487)
||||+..--+. |---+..|+++|.+.| +|+++.+...+.-..
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g 42 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATG 42 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCcccc
Confidence 46777764333 2345788999998888 799998876554433
No 167
>PRK05973 replicative DNA helicase; Provisional
Probab=81.60 E-value=5.1 Score=36.49 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
.-=+++...|+.|-..-.+.++...+++|..|.|++.+...+.+...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 34467777889999999999999998999999999988765554443
No 168
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=81.47 E-value=16 Score=31.82 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCe--EEEE-eCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVK--ASVI-TTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~-~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
|||+|+..++. ..+..+..+|.+++|. +.++ |.++.......... ..+....+.. ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~--------~~--- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADE--------KN--- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHG--------GG---
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccc--------cC---
Confidence 68998866655 5567778899999997 4444 44433221111100 1222222210 00
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCC-cchHHHHHHhCCCeEEEech
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFF-PWATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~-~~~~~~A~~~giP~v~~~~~ 149 (487)
... ......++.+.+++.+||++|+-.+. .....+-......++-++++
T Consensus 61 ---~~~-------------~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 ---FQP-------------RSENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ---SSS-------------HHHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ---CCc-------------hHhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000 01123467788888999998887653 34444556667777777653
No 169
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=81.24 E-value=17 Score=33.49 Aligned_cols=43 Identities=7% Similarity=0.001 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSR 52 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 52 (487)
||||+..--+. |---+.+|+++|.+ +|+|+++.+...+.-...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ 43 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGH 43 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccc
Confidence 46777764333 22337788999964 689999998766554433
No 170
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=80.14 E-value=11 Score=36.02 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=34.3
Q ss_pred eEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 046605 8 LHIFFFP-FLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPH 49 (487)
Q Consensus 8 ~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 49 (487)
||++|+. -|+-|-..-..++|..++++|++|.++++++.+..
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 4566665 66889999999999999999999999999887654
No 171
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=79.64 E-value=7 Score=37.56 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchh
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLS 51 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~ 51 (487)
||||++-....|++.-..++.+.|.++ +.+|++++.+.+.+.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 589999999999999999999999997 99999999987666554
No 172
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=78.79 E-value=1.5 Score=35.85 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
+||++...|+.+=.. ...+.++|.++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 578888888866666 999999999999999999998766666554
No 173
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=78.76 E-value=6 Score=33.91 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=28.8
Q ss_pred hhHHHHHHHhhCCCCEEEeCCCCcchHHHH----HH-h-CCCeEEEec
Q 046605 107 LQKPLEQLLQEHKPDCLVADMFFPWATDAA----AK-F-GIPRLVFHG 148 (487)
Q Consensus 107 ~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A----~~-~-giP~v~~~~ 148 (487)
..+.+.+++++.+||+||+.+.+.....++ +. + ++|.+.+.|
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 355788999999999999998875433121 22 3 477776644
No 174
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=78.69 E-value=43 Score=30.67 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSR 52 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 52 (487)
||||+..--+. |---+..|+++|.+.| +|+++.+...+.-+..
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ 43 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGTGH 43 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCcccccc
Confidence 46776653331 1223778999999988 8999999876655543
No 175
>PRK06849 hypothetical protein; Provisional
Probab=78.68 E-value=13 Score=36.77 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
+++++||++... ....+.+++.|.++||+|+++....
T Consensus 2 ~~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 357888888433 2368999999999999999997754
No 176
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=78.64 E-value=18 Score=32.36 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCe-EEEEeC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVK-ASVITT 43 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~-Vt~~~~ 43 (487)
|+-|+|.-.|..|-......|.++|.++||. ++.+..
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 4457888899999999999999999999986 444444
No 177
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=78.35 E-value=9 Score=38.87 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=67.0
Q ss_pred ecccchHh---hhcccCcccccc---ccC-chhHHHHhhcCCc----EeccCccccchhhHHHHHHHhhceEeecccccc
Q 046605 354 RGWAPQVL---ILDHEAVGGFVT---HCG-WNSILEGVTAGVP----LVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWC 422 (487)
Q Consensus 354 ~~~vp~~~---ll~~~~~~~~I~---HGG-~gs~~eal~~GvP----~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 422 (487)
...+++.+ ++..+++ ++. +=| ..+..||+++|+| +|+--.. ..+..+ +-|+.++.
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~----G~~~~l----~~gllVnP---- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFA----GAAQEL----NGALLVNP---- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCC----CChHHh----CCcEEECC----
Confidence 34566554 5666777 553 335 4488899999999 5444333 223323 34666654
Q ss_pred cccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Q 046605 423 RIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLS 483 (487)
Q Consensus 423 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~ 483 (487)
.+.+++.++|.++|+ ...++-+++.+++.+.+. + -++..-+++++++|.
T Consensus 407 ------~d~~~lA~aI~~aL~-~~~~er~~r~~~~~~~v~----~-~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 ------YDIDGMADAIARALT-MPLEEREERHRAMMDKLR----K-NDVQRWREDFLSDLN 455 (456)
T ss_pred ------CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHh----h-CCHHHHHHHHHHHhh
Confidence 589999999999997 223466666666766655 2 456666777877764
No 178
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=77.81 E-value=13 Score=27.99 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=46.9
Q ss_pred ccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 046605 397 AEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLN 476 (487)
Q Consensus 397 ~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~ 476 (487)
.|+..|..-. +.+|.+.+. .+++.++...+.+++.-+-.| .+.+-..+. +.|++ +.
T Consensus 20 ~~~~gWr~LA-e~lg~~~~f-----------r~S~~el~~cslkvl~p~gSP-----sk~LL~~~~---~rg~T----v~ 75 (97)
T cd08783 20 ADGKGWRKLA-ELAGSRGRF-----------RLSCLDLEQCSLKVLEPEGSP-----SRSLLKLLG---ERGCT----VT 75 (97)
T ss_pred CccCCHHHHH-HHHccCCcc-----------ccCHHHHHHHHHHHhcCCCCc-----hHHHHHHHH---HcCCc----HH
Confidence 4667888877 788888733 589999999999999711111 233444444 56777 57
Q ss_pred HHHHHHhhccC
Q 046605 477 SLIEDLSLRRH 487 (487)
Q Consensus 477 ~~~~~l~~~~~ 487 (487)
+|++.|+.+-|
T Consensus 76 ~Ll~~L~~Mgh 86 (97)
T cd08783 76 ELSEFLQAMEH 86 (97)
T ss_pred HHHHHHHHhhh
Confidence 88888887765
No 179
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=77.64 E-value=9.8 Score=38.72 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=59.2
Q ss_pred eecccchHh---hhcccCcccccc---ccCch-hHHHHhhcCCc---EeccCccccchhhHHHHHHHhhceEeecccccc
Q 046605 353 IRGWAPQVL---ILDHEAVGGFVT---HCGWN-SILEGVTAGVP---LVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWC 422 (487)
Q Consensus 353 ~~~~vp~~~---ll~~~~~~~~I~---HGG~g-s~~eal~~GvP---~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 422 (487)
+..++++.+ ++..+++ ||. +-|.| ++.||+++|+| ++++.-.. ..+ +...-|+.++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~---G~~----~~~~~g~lv~p---- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFA---GAA----EELSGALLVNP---- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccc---cch----hhcCCCEEECC----
Confidence 346677654 5777887 552 34544 77999999999 33333221 111 11223555553
Q ss_pred cccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 046605 423 RIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDL 482 (487)
Q Consensus 423 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l 482 (487)
.+.+++.++|.++++.+ ...-+++.++.++.+. .-+...-+++++.+|
T Consensus 412 ------~d~~~la~ai~~~l~~~-~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ------YDIDEVADAIHRALTMP-LEERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ------CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 48999999999999721 2233333333333333 245555556666554
No 180
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.21 E-value=62 Score=31.08 Aligned_cols=62 Identities=8% Similarity=-0.066 Sum_probs=48.1
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFP 72 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~ 72 (487)
.++.|++++..|--||-=.|.-=|..|++.|.+|.++.-.......+-. + ..+++++.++-+
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~-~-----hprI~ih~m~~l 71 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL-N-----HPRIRIHGMPNL 71 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh-c-----CCceEEEeCCCC
Confidence 5678999999999999999999999999999999999865443332211 1 247999988743
No 181
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=76.89 E-value=5.6 Score=34.80 Aligned_cols=100 Identities=15% Similarity=0.255 Sum_probs=49.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCc-cchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNA-PHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~-~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
+++-+-..+-|-++...+|+++|.++ |++|.+-++.... +.+.+.. +..+....+|++
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~------~~~v~~~~~P~D------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL------PDRVDVQYLPLD------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-------GGG-SEEE---S-------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC------CCCeEEEEeCcc-------------
Confidence 34444456789999999999999988 8998888764332 2232221 112223334321
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcc--hHHHHHHhCCCeEEEec
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPW--ATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~--~~~~A~~~giP~v~~~~ 148 (487)
. -..+.+.++.++||++|.--.-.| ....|+..|||.+.++.
T Consensus 83 ----------~-----------~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ----------F-----------PWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ----------S-----------HHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ----------C-----------HHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 0 114566677779999775554444 45567888999999865
No 182
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=76.24 E-value=4.2 Score=32.51 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
||++.+.++-.|.....-++..|.++|++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 589999999999999999999999999999887654
No 183
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=75.01 E-value=4 Score=35.84 Aligned_cols=43 Identities=12% Similarity=-0.031 Sum_probs=33.8
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNA 47 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 47 (487)
.+.+||++.-.|+.|=+.-...+++.|.++||+|.++.++...
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 3567888877776655554799999999999999999997543
No 184
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.85 E-value=5.9 Score=35.11 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=28.5
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 046605 15 FLAHGHMIPTVDMAKLFTTRGVKASVITTPGNA 47 (487)
Q Consensus 15 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 47 (487)
--+.|-..=.++++..+...||+|++++++...
T Consensus 36 d~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 36 DNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred CCCccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 347788888999999999999999999997653
No 185
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=74.48 E-value=26 Score=32.22 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=56.7
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLD 86 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (487)
+++|+++...+-| ..||+.|.++|+.|+..+...... .... +..... ..+
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~---------~~~v~~--------------G~l- 51 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADL---------PGPVRV--------------GGF- 51 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccC---------CceEEE--------------CCC-
Confidence 4667777665555 578999999999888776654332 1110 111110 000
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEe--CCCCc----chHHHHHHhCCCeEEEe
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVA--DMFFP----WATDAAAKFGIPRLVFH 147 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~--D~~~~----~~~~~A~~~giP~v~~~ 147 (487)
.. .+.+.+++++.+.++||= .+|.. -+..+|+.+|||++.+.
T Consensus 52 --~~-----------------~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 52 --GG-----------------AEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred --CC-----------------HHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 00 235677778889999883 33322 25678999999999984
No 186
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=74.40 E-value=6.4 Score=31.38 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
.|+++.+.+..-|-.-+.-|+..|.++||+|.++-..
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 4789999999999999999999999999999988554
No 187
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=74.37 E-value=45 Score=33.12 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=42.0
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhh
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQK 56 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~ 56 (487)
++.-|+++-.-+.|-..-+-.||+.|.++|+.|.+++.+.++...-..+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~ 149 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQ 149 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHH
Confidence 445677777889999999999999999999999999999887665444443
No 188
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=74.28 E-value=6.9 Score=39.28 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
++||||++-.+++-| +|++.|.+-++...+++.|
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 578999999998877 6899999988665555544
No 189
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=74.20 E-value=84 Score=30.06 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=33.0
Q ss_pred chHhhhcccCccccccccCchhHHHHhhcCCcEeccCccc
Q 046605 358 PQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYA 397 (487)
Q Consensus 358 p~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~ 397 (487)
|+..+|..++. ++||---.+-+.||+..|+|+.++|.-.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 56778888876 5777777889999999999999999776
No 190
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=73.97 E-value=1.5 Score=38.21 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCCChHH------------HHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIP------------TVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 44 (487)
..||++.+.|+.=.+.| -..||+++..||++|+++..+
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 46777777766666644 358999999999999999997
No 191
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=73.91 E-value=43 Score=31.04 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
.=+++.-.|+.|=..-.++++...+++|..|.|++.+.-
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 345666788999999999999998889999999998743
No 192
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=73.07 E-value=43 Score=31.05 Aligned_cols=113 Identities=9% Similarity=0.114 Sum_probs=57.2
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTR---GVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWEN 84 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~r---Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 84 (487)
||||+..--+. |---+.+|+++|.+. |++|+++.+...+.-+..... ....++...+. ++.-.
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT----~~~pl~~~~~~---------~~~ya 66 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCIS----YTHPMMIAELG---------PRRFA 66 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCccccc----CCCCeEEEEeC---------CCeEE
Confidence 35666652211 112356677777663 479999998766554433322 12234444432 11100
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeC----------CCCc---chHHHHHHhCCCeEEEec
Q 046605 85 LDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVAD----------MFFP---WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D----------~~~~---~~~~~A~~~giP~v~~~~ 148 (487)
.+..+. +... -.+..++...+||+||+- .++. ++..-|..+|||.|.+|.
T Consensus 67 v~GTPa----DCV~----------lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 67 AEGSPA----DCVL----------AALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred EcCchH----HHHH----------HHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 111111 2211 133344433589999963 3322 344456778999999975
No 193
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=72.97 E-value=5.8 Score=36.09 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAP 48 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 48 (487)
-+++.-.++.|-..-..+++.+.+++|..|.+++.+...+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSK 66 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 3556667799999999999888888999999999875543
No 194
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=72.63 E-value=6.5 Score=28.84 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=32.2
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
..-++++..+...|...+..+|+.|.++|+.|...=.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3668888899999999999999999999999886544
No 195
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=72.46 E-value=20 Score=32.59 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=34.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCCccchhh
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTR-GVKASVITTPGNAPHLSR 52 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~ 52 (487)
+++...|+.|=..-++.++..++.+ |+.|.|++.+...+.+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 4556677999999999999998887 999999998876544433
No 196
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=72.10 E-value=59 Score=31.22 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=35.3
Q ss_pred ceEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 046605 7 QLHIFFFP-FLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPH 49 (487)
Q Consensus 7 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 49 (487)
++||+|++ =|+-|-..-..++|-.|++.|..|.++++++.+..
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 46788777 56889999999999999999988888888776554
No 197
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=71.80 E-value=21 Score=30.27 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=60.1
Q ss_pred EEEEcCCCCCChHH----HHHHHHHHHhC-CCeEEEEeCCCCccchhhhhhhhhccCcce-eEEEeeCCCccCCCCCCCc
Q 046605 10 IFFFPFLAHGHMIP----TVDMAKLFTTR-GVKASVITTPGNAPHLSRSIQKASELGIEL-DVKIIKFPSAEAGLPEGWE 83 (487)
Q Consensus 10 Il~~~~~~~GH~~p----~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i-~~~~i~~~~~~~~~~~~~~ 83 (487)
|+++.--..|.+++ .+..|++|.++ |.+|+.++-....+..+....... ..+. +.+.++.+. ..
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~--~~G~d~v~~~~~~~--------~~ 71 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALA--KYGADKVYHIDDPA--------LA 71 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHH--STTESEEEEEE-GG--------GT
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhh--hcCCcEEEEecCcc--------cc
Confidence 55555444666665 67889999976 888887776532222222000000 1133 344443110 00
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc---chHHHHHHhCCCeEEEec
Q 046605 84 NLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP---WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~---~~~~~A~~~giP~v~~~~ 148 (487)
. . ..+.....+.+++++.+||+|+.-.... .+..+|.++|.|++.-.+
T Consensus 72 ~---~--------------~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 72 E---Y--------------DPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp T---C---------------HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred c---c--------------CHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 0 0 0011234667777778999999876544 467789999999997644
No 198
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=71.32 E-value=18 Score=33.64 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=33.8
Q ss_pred cEeecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCc
Q 046605 351 LIIRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPV 395 (487)
Q Consensus 351 v~~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 395 (487)
+.+.+-++-.++|.+++. +||-.+ ++-.||+.+|+|++++.-
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 445567788899999887 777754 488999999999999873
No 199
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=71.04 E-value=38 Score=34.06 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=29.3
Q ss_pred HHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 110 PLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
++.+.+++.+||+||.++. ...+|+++|+|++.++
T Consensus 362 el~~~i~~~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 362 DLESLAKEEPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHhhccCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 6677888889999999974 5678999999999774
No 200
>PRK14099 glycogen synthase; Provisional
Probab=70.74 E-value=6.6 Score=40.26 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=43.4
Q ss_pred CCc-EeecccchHh-hh-cccCcccccc---ccCch-hHHHHhhcCCcEeccCccc--cchhhHHHHHH--HhhceEeec
Q 046605 349 KGL-IIRGWAPQVL-IL-DHEAVGGFVT---HCGWN-SILEGVTAGVPLVTWPVYA--EQFYNEKIVNE--VLKIGIGVG 417 (487)
Q Consensus 349 ~nv-~~~~~vp~~~-ll-~~~~~~~~I~---HGG~g-s~~eal~~GvP~l~~P~~~--DQ~~~a~rv~~--~~G~G~~l~ 417 (487)
.++ .+.++-.... ++ +.+++ |+. +=|.| +..||+++|+|.|+....+ |--.......+ ..+.|..++
T Consensus 350 ~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~ 427 (485)
T PRK14099 350 GQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS 427 (485)
T ss_pred CCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeC
Confidence 344 4556633322 33 34565 553 34444 6789999998766654321 21111100000 114677775
Q ss_pred ccccccccCCccCHHHHHHHHHHH
Q 046605 418 IQKWCRIVGDFVKREAIVKAVNEI 441 (487)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~i~~l 441 (487)
. -++++|.++|.++
T Consensus 428 ~----------~d~~~La~ai~~a 441 (485)
T PRK14099 428 P----------VTADALAAALRKT 441 (485)
T ss_pred C----------CCHHHHHHHHHHH
Confidence 4 4899999999973
No 201
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=70.28 E-value=9.5 Score=33.06 Aligned_cols=42 Identities=12% Similarity=0.009 Sum_probs=35.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLS 51 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 51 (487)
+++.-.|+.|=..-.+.++.+.+++|..|.+++.+...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 466777899999999999999999999999999876655443
No 202
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=70.18 E-value=8.4 Score=35.25 Aligned_cols=99 Identities=12% Similarity=0.211 Sum_probs=54.5
Q ss_pred CCcEEEEeccCccc---CCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecc--cch
Q 046605 285 PNSVVYICFGSVAN---FTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGW--APQ 359 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~---~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~--vp~ 359 (487)
+++.|.+..|+... .+.+...++++.+.+.++++++..+..... ++....+.+. .....+.+..- +.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~---~~~~~~~~~~----~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQE---KEIADQIAAG----LQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHH---HHHHHHHHTT----HTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHH---HHHHHHHHHh----cccceEeecCCCCHHH
Confidence 45688888888664 578889999999988887766554443210 0111001111 01113333332 233
Q ss_pred -HhhhcccCccccccccCchhHHHHhhcCCcEecc
Q 046605 360 -VLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTW 393 (487)
Q Consensus 360 -~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 393 (487)
..++.++++ +|+. -.|.++=|...|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 568888886 7776 567899999999999988
No 203
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=69.72 E-value=24 Score=27.58 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccchhhhhHHHHHH
Q 046605 20 HMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAITNEVNRELIVK 99 (487)
Q Consensus 20 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+-.-++.+++.|.+.|+++ ++ ++...+.+++. ++....+..+ . .
T Consensus 11 ~k~~~~~~~~~l~~~G~~l-~a-T~gT~~~l~~~---------gi~~~~v~~~------~-~------------------ 54 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKL-VA-TEGTAKYLQEA---------GIPVEVVNKV------S-E------------------ 54 (110)
T ss_pred cHhHHHHHHHHHHHCCCEE-EE-chHHHHHHHHc---------CCeEEEEeec------C-C------------------
Confidence 5567889999999999998 34 44444444443 5555544211 0 0
Q ss_pred HHHHHHhhhHHHHHHHhhCCCCEEEeCCCC-------cchHHHHHHhCCCeEE
Q 046605 100 FYMATTKLQKPLEQLLQEHKPDCLVADMFF-------PWATDAAAKFGIPRLV 145 (487)
Q Consensus 100 ~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~-------~~~~~~A~~~giP~v~ 145 (487)
-...+.+.+++.++|+||..+.. +.....|-.+|||++.
T Consensus 55 -------~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -------GRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -------CchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 01256777888899999985422 3456678999999884
No 204
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=68.82 E-value=5.7 Score=34.25 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
|||.++. +.|++- -.|+++..+|||+||-++-..
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 5676664 333332 368899999999999999754
No 205
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=68.59 E-value=44 Score=33.71 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=29.0
Q ss_pred HHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 110 PLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
++.+.++..+||++|..+ ....+|+++|+|++.+.
T Consensus 368 e~~~~i~~~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTEPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhcCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 566677777999999986 36789999999999874
No 206
>PRK06321 replicative DNA helicase; Provisional
Probab=68.04 E-value=43 Score=34.13 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=32.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFT-TRGVKASVITTPGNAPHL 50 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 50 (487)
|++...|+.|-..-.+.+|...+ +.|..|.|++-+--.+.+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 56667889999999999999987 459999999876554333
No 207
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=67.93 E-value=66 Score=27.34 Aligned_cols=78 Identities=9% Similarity=0.068 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHh-cCCCcEeecccch-Hh-hhc------ccCcccccccc
Q 046605 305 MEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRM-EGKGLIIRGWAPQ-VL-ILD------HEAVGGFVTHC 375 (487)
Q Consensus 305 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~vp~-~~-ll~------~~~~~~~I~HG 375 (487)
+.+++.|++.|.+.+.-+.+... ++ +-+.. +.+++.++..-.. .. .+. ..+...+++|.
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~----------~~--l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~ 71 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSI----------NG--LMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSS 71 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCch----------HH--HHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 34566777777777777776643 21 11111 1234444332221 11 111 12334488888
Q ss_pred Cch------hHHHHhhcCCcEeccC
Q 046605 376 GWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 376 G~g------s~~eal~~GvP~l~~P 394 (487)
|-| .+.+|...++|+|++.
T Consensus 72 GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 72 GPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 854 7889999999999997
No 208
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=67.90 E-value=5.8 Score=36.03 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCCChHHH------------HHHHHHHHhCCCeEEEEeCC
Q 046605 8 LHIFFFPFLAHGHMIPT------------VDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~ 44 (487)
|||++.+.|+.=.+.|. .+||++|.++||+|+++..+
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 46777777666666543 48899999999999999753
No 209
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=67.03 E-value=38 Score=31.25 Aligned_cols=43 Identities=23% Similarity=0.229 Sum_probs=34.3
Q ss_pred EEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 10 IFFF-PFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 10 Il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
++++ .-|+.|...-..++|..++++|++|.++..+.. ..+...
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 4444 477899999999999999999999999988764 344443
No 210
>PRK06988 putative formyltransferase; Provisional
Probab=66.86 E-value=30 Score=33.10 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
||||+|+..+. -.+...++|.++||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 47999986554 3456677888899998777664
No 211
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=66.68 E-value=14 Score=37.92 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
..-+++.-.|+.|-..=.+.++.+.+++|..|.+++.+...+.+...
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 34567777889999999999999999999999999988776555443
No 212
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=66.60 E-value=4.9 Score=34.99 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=36.0
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSR 52 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 52 (487)
|+||++.-.|+.|=+. ...+.+.|.++|++|.++.++..++.+..
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 4678888777666555 79999999999999999999876666553
No 213
>PRK09620 hypothetical protein; Provisional
Probab=66.26 E-value=7.5 Score=35.29 Aligned_cols=39 Identities=5% Similarity=-0.094 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCCChHHH------------HHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFLAHGHMIPT------------VDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~------------l~La~~L~~rGh~Vt~~~~~ 44 (487)
+.+||++...|+.=.+.|. ..||++|.++|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3567888777665554442 48899999999999999764
No 214
>PRK05595 replicative DNA helicase; Provisional
Probab=66.15 E-value=35 Score=34.54 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=32.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFT-TRGVKASVITTPGNAPHL 50 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 50 (487)
+++...|+.|-..-.+.+|..++ +.|+.|.|++-+-..+.+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45667889999999999998876 569999999887554333
No 215
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=65.84 E-value=37 Score=28.84 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=21.2
Q ss_pred ccccccccCch------hHHHHhhcCCcEeccCc
Q 046605 368 VGGFVTHCGWN------SILEGVTAGVPLVTWPV 395 (487)
Q Consensus 368 ~~~~I~HGG~g------s~~eal~~GvP~l~~P~ 395 (487)
...++++.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33367776644 67889999999999973
No 216
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=65.56 E-value=30 Score=27.39 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=55.2
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccchhh
Q 046605 12 FFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAITNE 91 (487)
Q Consensus 12 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~ 91 (487)
|++.... +-.-+..+++.|.+.|++| ++ ++...+.+.+. ++....+.- .. .....
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i-~a-T~gTa~~L~~~---------gi~~~~v~~------~~-~~~~~------ 58 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKL-YA-TEGTADFLLEN---------GIPVTPVAW------PS-EEPQN------ 58 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEE-EE-ccHHHHHHHHc---------CCCceEeee------cc-CCCCC------
Confidence 4444433 4456889999999999988 34 44444444433 444443310 00 00000
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCC---------CcchHHHHHHhCCCeE
Q 046605 92 VNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMF---------FPWATDAAAKFGIPRL 144 (487)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~---------~~~~~~~A~~~giP~v 144 (487)
+ ...+.+++++.++|+||.-+. .+.....|-.+|+|++
T Consensus 59 ---~------------~~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 59 ---D------------KPSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred ---C------------chhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 0 135677788889999998542 2345667999999986
No 217
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=65.34 E-value=13 Score=34.12 Aligned_cols=123 Identities=14% Similarity=0.081 Sum_probs=66.9
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENL 85 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 85 (487)
+...|.|.-.|+.|--.=.-.|++.|.++|++|-++.-++....---. -.|.+++...+.. +..-..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA-----lLGDRiRM~~~~~--------d~~vfI 94 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA-----LLGDRIRMQELSR--------DPGVFI 94 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--------SS--GGGCHHHHT--------STTEEE
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc-----ccccHHHhcCcCC--------CCCEEE
Confidence 456788888999999999999999999999999998765433221111 1233444433320 000111
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEEec
Q 046605 86 DAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~ 148 (487)
..... ...+..+... ..+...+++...+|+||.+..-. .-..++.....-++.+.|
T Consensus 95 RS~at---RG~lGGls~~----t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 95 RSMAT---RGSLGGLSRA----TRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp EEE------SSHHHHHHH----HHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred eecCc---CCCCCCccHh----HHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 22222 2223333333 33566778888999999997544 345566666766555543
No 218
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=65.18 E-value=11 Score=31.16 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
.+++||++.+.+..||-.-.--+++.|++.|.+|.....-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC
Confidence 47899999999999999999999999999999998876543
No 219
>PRK14098 glycogen synthase; Provisional
Probab=64.09 E-value=10 Score=38.97 Aligned_cols=40 Identities=5% Similarity=0.077 Sum_probs=30.3
Q ss_pred CceEEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 6 CQLHIFFFPFL------AHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 6 ~~~~Il~~~~~------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
+||||++++.- +-|=-.-+-+|.++|+++||+|.++++..
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 56999999722 22333456789999999999999999844
No 220
>PRK12342 hypothetical protein; Provisional
Probab=64.06 E-value=14 Score=34.07 Aligned_cols=38 Identities=11% Similarity=-0.065 Sum_probs=28.0
Q ss_pred HHHHHhhCCCCEEEeCCCCc------chHHHHHHhCCCeEEEec
Q 046605 111 LEQLLQEHKPDCLVADMFFP------WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 111 l~~~l~~~~pDlVI~D~~~~------~~~~~A~~~giP~v~~~~ 148 (487)
|...++..+||+|++...+. -+..+|+.+|+|++....
T Consensus 101 La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 101 LAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 34444445799999765444 378899999999998754
No 221
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=63.87 E-value=1e+02 Score=27.02 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=23.2
Q ss_pred HHHHHHhhCCCCEEEeCCC-CcchHHHHHHhCCCeEEEec
Q 046605 110 PLEQLLQEHKPDCLVADMF-FPWATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~-~~~~~~~A~~~giP~v~~~~ 148 (487)
++.+.+++.++|++|+-.+ ......+-..+...++-+++
T Consensus 70 ~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHp 109 (190)
T TIGR00639 70 AIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHP 109 (190)
T ss_pred HHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEeC
Confidence 5677788889999887654 33333343444444454443
No 222
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=63.66 E-value=44 Score=33.55 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=26.0
Q ss_pred HHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 113 QLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 113 ~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
+.+++.+||++|..+ -+..+|+++|||++.+.
T Consensus 349 ~~l~~~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVLEFEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHhhCCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 455678999999984 35668999999999874
No 223
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=63.53 E-value=36 Score=32.14 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=36.4
Q ss_pred ccCccccccccCchhHHHHhhc----CCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHH
Q 046605 365 HEAVGGFVTHCGWNSILEGVTA----GVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNE 440 (487)
Q Consensus 365 ~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ 440 (487)
.+++ +|+-||-||+++++.. ++|++.+-. -++ |... ..+.+++.+.|.+
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~--------G~l------GFL~-----------~~~~~~~~~~l~~ 115 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH--------GRL------GFIT-----------DIPLDDMQETLPP 115 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC--------CCc------cccc-----------cCCHHHHHHHHHH
Confidence 4555 9999999999999874 567776652 111 2111 4567788888888
Q ss_pred HhcCc
Q 046605 441 IMMGD 445 (487)
Q Consensus 441 ll~~~ 445 (487)
+++|+
T Consensus 116 ~~~g~ 120 (291)
T PRK02155 116 MLAGN 120 (291)
T ss_pred HHcCC
Confidence 87643
No 224
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=63.51 E-value=34 Score=25.63 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=25.0
Q ss_pred HHHHHHhhCCCCEEEeCCCC---------cchHHHHHHhCCCeE
Q 046605 110 PLEQLLQEHKPDCLVADMFF---------PWATDAAAKFGIPRL 144 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~---------~~~~~~A~~~giP~v 144 (487)
.+.+.+++.+.|+||..+.. +....+|...+||++
T Consensus 46 ~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 36778888999999985431 124456888899876
No 225
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=63.46 E-value=35 Score=33.55 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPH 49 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 49 (487)
=+++.-.|+.|-..=++.+|..+.++|..|.+++.+...+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~q 124 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQ 124 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHH
Confidence 34566677999999999999999999999999988754433
No 226
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=63.24 E-value=29 Score=31.98 Aligned_cols=38 Identities=32% Similarity=0.507 Sum_probs=28.2
Q ss_pred HHHHHHhhCCCCEEEe--CCCCc----chHHHHHHhCCCeEEEe
Q 046605 110 PLEQLLQEHKPDCLVA--DMFFP----WATDAAAKFGIPRLVFH 147 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~--D~~~~----~~~~~A~~~giP~v~~~ 147 (487)
.+.+++++.++|+||= .+|.. -+..+|+.+|||++.+-
T Consensus 57 ~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 57 GLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 6777788889999983 32322 25668999999999984
No 227
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=63.07 E-value=35 Score=32.67 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
|||+|+..+..+ +...++|.++||+|..+.+
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt 31 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVT 31 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEc
Confidence 578888655433 6777888999999876654
No 228
>PRK08760 replicative DNA helicase; Provisional
Probab=62.75 E-value=30 Score=35.29 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCCccc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTT-RGVKASVITTPGNAPH 49 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~ 49 (487)
=|++...|+.|-..-.+.+|...+. .|+.|.|++-+-..+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 3566678899999999999998875 4999999988765443
No 229
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=62.68 E-value=91 Score=30.50 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=0.0
Q ss_pred CcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhH-------------HHHhcCCCcEeecccchHh
Q 046605 295 SVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGF-------------EKRMEGKGLIIRGWAPQVL 361 (487)
Q Consensus 295 s~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~-------------~~~~~~~nv~~~~~vp~~~ 361 (487)
|.+.-+..-+..+++++++.+..+...+..+. ....+ ..+...-.+.+.+|+||.+
T Consensus 188 slF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~-----------~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~ 256 (374)
T PF10093_consen 188 SLFCYENAALASLLDAWAASPKPVHLLVPEGR-----------ALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDD 256 (374)
T ss_pred EEEeCCchHHHHHHHHHhcCCCCeEEEecCCc-----------cHHHHHHHhccccccCccccccCCeEEEECCCCCHHH
Q ss_pred ---hhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHH
Q 046605 362 ---ILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAV 438 (487)
Q Consensus 362 ---ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i 438 (487)
+|-.|+ +--==|==|+.-|..+|+|.| -++.=|.++|... ++.+=+..... .+.+ +...++
T Consensus 257 yD~LLw~cD---~NfVRGEDSfVRAqwAgkPFv--WhIYpQ~d~aHl~--KL~AFL~~y~~--------~~~~-~~~~a~ 320 (374)
T PF10093_consen 257 YDRLLWACD---FNFVRGEDSFVRAQWAGKPFV--WHIYPQEDDAHLD--KLDAFLDRYCA--------GLPP-EAAAAL 320 (374)
T ss_pred HHHHHHhCc---cceEecchHHHHHHHhCCCce--EecCcCchhhHHH--HHHHHHHHHhh--------cCCH-HHHHHH
Q ss_pred HHH------------------hcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 046605 439 NEI------------------MMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIED 481 (487)
Q Consensus 439 ~~l------------------l~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 481 (487)
+++ -. .+..++.++.++..+. ..+....++.+|+++
T Consensus 321 ~~~~~~wN~~~~~~~~w~~~~~~---~~~~~~~a~~w~~~l~----~~~dLa~~L~~F~~n 374 (374)
T PF10093_consen 321 RAFWRAWNGGQDAPDAWQDLLEH---LPEWQQHARAWRQQLL----AQGDLASNLVQFVEN 374 (374)
T ss_pred HHHHHHHhCCCCchhhHHHHHHH---hHHHHHHHHHHHHHHH----hccCHHHHHHHHHhC
No 230
>PRK10867 signal recognition particle protein; Provisional
Probab=62.17 E-value=66 Score=32.35 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCCccch
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTR-GVKASVITTPGNAPHL 50 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v 50 (487)
.-|+|+..++.|-..-...||..|.++ |+.|.+++.+.++...
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 345566677999999999999999999 9999999998877544
No 231
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.12 E-value=35 Score=33.25 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=44.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEE
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKI 68 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~ 68 (487)
=|+|+-.-+.|-...+-.+|..+.++|+.+-+++.+.|+.-....+..++..- ++.|+.
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~-~iP~yg 161 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKA-RVPFYG 161 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhh-CCeeEe
Confidence 34555677999999999999999999999999999999876655544443222 444443
No 232
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=61.61 E-value=6.7 Score=34.21 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=36.0
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCCccchhh
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTT-RGVKASVITTPGNAPHLSR 52 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v~~ 52 (487)
|+||++.-.|+-| .+=...++++|.+ .||+|.++.++...+.+..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 4678888777777 6668999999999 5999999999876655543
No 233
>PRK09165 replicative DNA helicase; Provisional
Probab=60.88 E-value=48 Score=34.09 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC---------------CCeEEEEeCCCCccchh
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTR---------------GVKASVITTPGNAPHLS 51 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~~~~~v~ 51 (487)
=+++...|+.|-..-.+.+|...+.+ |..|.|++-+--.+.+.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 35667788999999999999888753 78899998876654443
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=60.39 E-value=8.1 Score=35.71 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
+...++|+-.++.|-.+=..+||.+|.++|+.|+|++.+.+...+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 345788888889899999999999999889999999998776655544
No 235
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=60.17 E-value=77 Score=31.79 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFT-TRGVKASVITTPGNAPHL 50 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 50 (487)
=+++...|+.|-..-.+.+|..++ +.|+.|.|++.+-..+.+
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 356667889999999999998887 679999999977554433
No 236
>PRK04328 hypothetical protein; Provisional
Probab=60.01 E-value=1.4e+02 Score=27.37 Aligned_cols=44 Identities=7% Similarity=-0.067 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
..-+++.-.|+.|-..-.+.++.+-+++|+.+.+++.+...+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQV 66 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHH
Confidence 34456667778999888888887777889999999987665444
No 237
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=59.34 E-value=68 Score=32.31 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=33.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCCccch
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTT-RGVKASVITTPGNAPHL 50 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~v 50 (487)
=+++...|+.|=..-.+.+|..++. .|+.|.|++-+--.+.+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 3566678899999999999998875 59999999987665444
No 238
>PHA02542 41 41 helicase; Provisional
Probab=59.31 E-value=54 Score=33.44 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
=|++..-|+.|-..-.+.+|...++.|+.|.|++-+--.+.+
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 356667889999999999999998889999999876554433
No 239
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=59.15 E-value=76 Score=26.44 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=21.8
Q ss_pred ccccccccCch------hHHHHhhcCCcEeccCc
Q 046605 368 VGGFVTHCGWN------SILEGVTAGVPLVTWPV 395 (487)
Q Consensus 368 ~~~~I~HGG~g------s~~eal~~GvP~l~~P~ 395 (487)
..++++|+|-| .+.+|...++|+|++..
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 33488886644 78899999999999964
No 240
>PRK08506 replicative DNA helicase; Provisional
Probab=58.81 E-value=71 Score=32.64 Aligned_cols=43 Identities=14% Similarity=0.022 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
-=+++...|+.|-..-.+.+|...+++|+.|.|++-+--.+.+
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 3456667889999999999999998899999999887554443
No 241
>PLN02470 acetolactate synthase
Probab=58.76 E-value=31 Score=36.34 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=56.6
Q ss_pred eccCcccCC--HHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccc-hHh-------
Q 046605 292 CFGSVANFT--SAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAP-QVL------- 361 (487)
Q Consensus 292 s~Gs~~~~~--~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp-~~~------- 361 (487)
+|||....+ ...-..+++.|++.|.+.|+-+++.... . +=+.+. +.++++.+.--. +..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~----~----l~dal~---~~~~i~~i~~rhE~~A~~~Adgy 70 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM----E----IHQALT---RSNCIRNVLCRHEQGEVFAAEGY 70 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH----H----HHHHHh---ccCCceEEEeccHHHHHHHHHHH
Confidence 577777632 2335778899999999999998887531 1 111221 123454432211 111
Q ss_pred hhcccCccccccccCch------hHHHHhhcCCcEeccC
Q 046605 362 ILDHEAVGGFVTHCGWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 362 ll~~~~~~~~I~HGG~g------s~~eal~~GvP~l~~P 394 (487)
-....+..++++|.|-| .+++|...++|+|++.
T Consensus 71 ar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 71 AKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 11223455588888854 7889999999999996
No 242
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=58.49 E-value=40 Score=35.03 Aligned_cols=78 Identities=10% Similarity=-0.106 Sum_probs=45.0
Q ss_pred hHhhhcccCcccccc---ccC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhh--ceEeecccccccccCCccCHH
Q 046605 359 QVLILDHEAVGGFVT---HCG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLK--IGIGVGIQKWCRIVGDFVKRE 432 (487)
Q Consensus 359 ~~~ll~~~~~~~~I~---HGG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G--~G~~l~~~~~~~~~~~~~~~~ 432 (487)
..+++..|++ +|. +=| .-+..||+++|+|+|+-...+=- .++..++ ..| .|+.+...+. ..-.-+.+
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v-~~~~~~gi~V~~r~~---~~~~e~v~ 540 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHI-EDPESYGIYIVDRRF---KSPDESVQ 540 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHh-ccCCCceEEEecCCc---cchHHHHH
Confidence 4556666776 444 344 44899999999999987753210 1222232 222 5777753200 00123567
Q ss_pred HHHHHHHHHhc
Q 046605 433 AIVKAVNEIMM 443 (487)
Q Consensus 433 ~l~~~i~~ll~ 443 (487)
+|.+++.++++
T Consensus 541 ~La~~m~~~~~ 551 (590)
T cd03793 541 QLTQYMYEFCQ 551 (590)
T ss_pred HHHHHHHHHhC
Confidence 77778877775
No 243
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=58.35 E-value=21 Score=33.80 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+|||+|+.+|..+ ...-++|.+.||+|.-+.+.
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tq 33 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQ 33 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeC
Confidence 5889999887654 55667888899997766554
No 244
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=58.35 E-value=11 Score=32.87 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
.||++.-.|+.|=+.-.+.+.++|.++|++|+++.++..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 368888888888777778999999999999999998754
No 245
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=58.19 E-value=66 Score=28.35 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=32.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
|+|+-..+-|-..-...||..+..+|..|.+++.+.++--.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga 44 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGA 44 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccH
Confidence 45556669999999999999999999999999998886433
No 246
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=58.10 E-value=20 Score=30.27 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=27.7
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHHhcCC-cEEEE
Q 046605 288 VVYICFGSVANFTSAQLMEIAMGLEASGQ-NFIWV 321 (487)
Q Consensus 288 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~-~~i~~ 321 (487)
.+|+|+||....+...+...+.++.+.+. +++-+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 79999999998888889999999988864 44433
No 247
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=57.61 E-value=18 Score=32.22 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=34.1
Q ss_pred ceEEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 7 QLHIFFFPFL--AHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 7 ~~~Il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
|.+|++++.+ +-|-..-..+|+.+|+.+|+.|.++-.+--
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 4578888866 779999999999999999999999977644
No 248
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=57.52 E-value=12 Score=37.81 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=35.2
Q ss_pred CCceEEEEEcCCCCCChHHHH------------HHHHHHHhCCCeEEEEeCCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTV------------DMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l------------~La~~L~~rGh~Vt~~~~~~ 45 (487)
.+.+||++...|+.=-+.|.. .||+++..||++||+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 456799999999988887754 89999999999999999763
No 249
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=57.37 E-value=31 Score=35.63 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=50.5
Q ss_pred CCcEeecccc--h-HhhhcccCcccccccc---CchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccc
Q 046605 349 KGLIIRGWAP--Q-VLILDHEAVGGFVTHC---GWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWC 422 (487)
Q Consensus 349 ~nv~~~~~vp--~-~~ll~~~~~~~~I~HG---G~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~ 422 (487)
..|.+.++.. + ..++.+..+ +|.=+ |.++..||+.+|+|+| .......| +...=|.-+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 4577777777 3 346766665 77655 7779999999999999 22233334 233334444 2
Q ss_pred cccCCccCHHHHHHHHHHHhc
Q 046605 423 RIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 423 ~~~~~~~~~~~l~~~i~~ll~ 443 (487)
+..+|.++|..+|.
T Consensus 474 -------d~~~l~~al~~~L~ 487 (519)
T TIGR03713 474 -------DISELLKALDYYLD 487 (519)
T ss_pred -------CHHHHHHHHHHHHh
Confidence 67899999999997
No 250
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=56.78 E-value=1.2e+02 Score=25.65 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
-|.+.+.++.|-....+.+|-..+.+|++|.|+-.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46677888999999999999999999999999543
No 251
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=56.13 E-value=59 Score=25.54 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccchhhhhHHHHHH
Q 046605 20 HMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAITNEVNRELIVK 99 (487)
Q Consensus 20 H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+=.-++.+|+.|.+.|+++ ++| +...+.+++. +++...+.- ...+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT-~gTa~~L~~~---------Gi~~~~v~~------~~~~------------------ 54 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FAT-GGTSRVLADA---------GIPVRAVSK------RHED------------------ 54 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EEC-cHHHHHHHHc---------CCceEEEEe------cCCC------------------
Confidence 3456789999999999998 344 4444444444 555555421 1110
Q ss_pred HHHHHHhhhHHHHHHHhh-CCCCEEEeCC--CC--------cchHHHHHHhCCCeEEE
Q 046605 100 FYMATTKLQKPLEQLLQE-HKPDCLVADM--FF--------PWATDAAAKFGIPRLVF 146 (487)
Q Consensus 100 ~~~~~~~~~~~l~~~l~~-~~pDlVI~D~--~~--------~~~~~~A~~~giP~v~~ 146 (487)
-...+.+.+++ .+.|+||.-+ .. +.....|-..+||++.-
T Consensus 55 -------g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 55 -------GEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred -------CCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 01246667777 8999999733 22 12345688889998853
No 252
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=55.86 E-value=32 Score=37.34 Aligned_cols=111 Identities=15% Similarity=0.024 Sum_probs=64.7
Q ss_pred EeecccchHh---hhcccCccccccc---cC-chhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccc
Q 046605 352 IIRGWAPQVL---ILDHEAVGGFVTH---CG-WNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRI 424 (487)
Q Consensus 352 ~~~~~vp~~~---ll~~~~~~~~I~H---GG-~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~ 424 (487)
.+.+++++.+ ++..+++ |+.- -| ..++.|++++|+|-..+|...+--.-+..+ .-|+.++.
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P------ 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP------ 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC------
Confidence 3556778655 5666777 4432 24 448899999988643444433332223323 23666654
Q ss_pred cCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Q 046605 425 VGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 425 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~~ 484 (487)
.+.+++.++|.++|+-. .++-+++.+++.+.++ .-+...-++++++.+++
T Consensus 413 ----~d~~~la~ai~~~l~~~-~~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 413 ----NDIEGIAAAIKRALEMP-EEEQRERMQAMQERLR-----RYDVHKWASDFLDELRE 462 (726)
T ss_pred ----CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Confidence 47999999999999611 2344444444444433 24455556666666644
No 253
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=55.62 E-value=1.4e+02 Score=26.11 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCc---cchhhhhhhhhccCcceeEEEeeCCCccCCCCCCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNA---PHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGW 82 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~---~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~ 82 (487)
.+-.|.++...+.|-....+.+|-..+.+|++|.++-.=... ...... ...+ ++.+..... ++. .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l----~~l~-~v~~~~~g~-----~~~--~ 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL----EFGG-GVEFHVMGT-----GFT--W 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH----hcCC-CcEEEECCC-----CCc--c
Confidence 456788999999999999999999999999999999753221 111111 0012 566665431 111 0
Q ss_pred cccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc
Q 046605 83 ENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP 130 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~ 130 (487)
.. .. .. .-...........++.+.+.++|+||-|-...
T Consensus 89 ~~----~~---~~---e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 89 ET----QD---RE---RDIAAAREGWEEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred cC----CC---cH---HHHHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 00 00 01 11223334455667777788999999997653
No 254
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=55.62 E-value=41 Score=36.88 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=59.4
Q ss_pred hhhcccCcccccc---ccCch-hHHHHhhcCCc---EeccCccccchhhHHHHHHHhh-ceEeecccccccccCCccCHH
Q 046605 361 LILDHEAVGGFVT---HCGWN-SILEGVTAGVP---LVTWPVYAEQFYNEKIVNEVLK-IGIGVGIQKWCRIVGDFVKRE 432 (487)
Q Consensus 361 ~ll~~~~~~~~I~---HGG~g-s~~eal~~GvP---~l~~P~~~DQ~~~a~rv~~~~G-~G~~l~~~~~~~~~~~~~~~~ 432 (487)
+++..+++ |+. .-|.| +..|++++|+| ++++. +-...+. .+| -|+.+++ .+.+
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~----~l~~~allVnP----------~D~~ 431 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQ----SLGAGALLVNP----------WNIT 431 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchh----hhcCCeEEECC----------CCHH
Confidence 46777887 553 34665 77899999999 44444 3333332 334 4667664 4899
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Q 046605 433 AIVKAVNEIMMGDRAEEMRSRAKAFGEMAKRAVENGGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 433 ~l~~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~l~~ 484 (487)
++.++|.++|+-+ .+.-+++.+++.+..+ .-+...=.+++++.|++
T Consensus 432 ~lA~AI~~aL~m~-~~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 432 EVSSAIKEALNMS-DEERETRHRHNFQYVK-----THSAQKWADDFMSELND 477 (797)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHH
Confidence 9999999999611 2345555555555544 12333445556665543
No 255
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=55.46 E-value=25 Score=33.67 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=31.5
Q ss_pred HhhhHHHHHHHhhCCCCEEEeCCCCcch----------HHHHHHhCCCeEEE
Q 046605 105 TKLQKPLEQLLQEHKPDCLVADMFFPWA----------TDAAAKFGIPRLVF 146 (487)
Q Consensus 105 ~~~~~~l~~~l~~~~pDlVI~D~~~~~~----------~~~A~~~giP~v~~ 146 (487)
+...+.+.++++..+||+||+.+.|.++ ..+.+.++||.+.-
T Consensus 66 eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 66 EEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3445677888888999999999977632 22466889999865
No 256
>PRK05636 replicative DNA helicase; Provisional
Probab=55.43 E-value=44 Score=34.38 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCccc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFT-TRGVKASVITTPGNAPH 49 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~ 49 (487)
=|++...|+.|-..-.+.+|...+ +.|..|.|++-+-..+.
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~q 308 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSE 308 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHH
Confidence 356677889999999999998876 45888989887655433
No 257
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=55.37 E-value=23 Score=33.91 Aligned_cols=131 Identities=10% Similarity=0.014 Sum_probs=75.7
Q ss_pred cEEE-EeccCccc--CCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeec--ccch-H
Q 046605 287 SVVY-ICFGSVAN--FTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRG--WAPQ-V 360 (487)
Q Consensus 287 ~~v~-vs~Gs~~~--~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~--~vp~-~ 360 (487)
+.|. +-.||... .+.+.+.++++.+.+.++++++..|+... ++ .-+.+.+. .+++.+.+ .+.+ .
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e----~~----~~~~i~~~--~~~~~l~g~~sL~ela 248 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE----EQ----RAKRLAEG--FPYVEVLPKLSLEQVA 248 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH----HH----HHHHHHcc--CCcceecCCCCHHHHH
Confidence 3554 44444332 67888999999887778887765454321 11 11112111 12333332 2333 5
Q ss_pred hhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhh------HHHHHHHhhceEeecccccccccCCccCHHHH
Q 046605 361 LILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYN------EKIVNEVLKIGIGVGIQKWCRIVGDFVKREAI 434 (487)
Q Consensus 361 ~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~------a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l 434 (487)
.+++++++ +|+. -.|.++=|...|+|+|++=-..|-..+ ...+ +. ++ -... .+++|++
T Consensus 249 ali~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~-~~--~~--~cm~--------~I~~e~V 312 (322)
T PRK10964 249 RVLAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHAC-RS--PG--KSMA--------DLSAETV 312 (322)
T ss_pred HHHHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceee-cC--CC--cccc--------cCCHHHH
Confidence 58888887 8886 567999999999999987433332111 1111 00 00 1122 7899999
Q ss_pred HHHHHHHhc
Q 046605 435 VKAVNEIMM 443 (487)
Q Consensus 435 ~~~i~~ll~ 443 (487)
.++++++|+
T Consensus 313 ~~~~~~~l~ 321 (322)
T PRK10964 313 FQKLETLIS 321 (322)
T ss_pred HHHHHHHhh
Confidence 999998874
No 258
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=55.19 E-value=1.5e+02 Score=27.05 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCE-EEeCCCCc-chHHHHHHhCCCeEEEec
Q 046605 119 KPDC-LVADMFFP-WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 119 ~pDl-VI~D~~~~-~~~~~A~~~giP~v~~~~ 148 (487)
-||+ +|+|+..- -+..=|..+|||+|.+.-
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVD 187 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEec
Confidence 3998 55777655 567779999999999854
No 259
>PRK07773 replicative DNA helicase; Validated
Probab=54.94 E-value=88 Score=34.90 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCCccch
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTR-GVKASVITTPGNAPHL 50 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v 50 (487)
=|++..-|+.|-..-.+.+|...+.+ |..|.|++-+-..+.+
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 36667788999999999999998755 8889999876555443
No 260
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=54.32 E-value=25 Score=32.52 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCCEEEeCCCC-----c-chHHHHHHhCCCeEEEec
Q 046605 110 PLEQLLQEHKPDCLVADMFF-----P-WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~-----~-~~~~~A~~~giP~v~~~~ 148 (487)
.|...++...||||++...+ . -+..+|+.+|+|++....
T Consensus 103 ~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 103 ALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 34444455579999975433 2 477899999999998765
No 261
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=54.28 E-value=40 Score=30.27 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
.-+++.-.|+.|-..-.+.++..-+++|+.|.+++.+...+.+.+.
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 3455666778899888888988888889999999998765544433
No 262
>PRK05920 aromatic acid decarboxylase; Validated
Probab=53.99 E-value=11 Score=33.53 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLS 51 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 51 (487)
++||++.-.|+.+= +=...+.+.|.++||+|.++.++...+.+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 56787776665544 688999999999999999999987655554
No 263
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=53.81 E-value=25 Score=30.72 Aligned_cols=41 Identities=32% Similarity=0.583 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCC--EEEeCCCCc-chHHHHHHhCCCeEEEech
Q 046605 109 KPLEQLLQEHKPD--CLVADMFFP-WATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 109 ~~l~~~l~~~~pD--lVI~D~~~~-~~~~~A~~~giP~v~~~~~ 149 (487)
..+.+++++..++ ++|..++-- .+..+|+.+|+|.|.++|+
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 4566777775554 666666543 6777999999999999775
No 264
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=53.71 E-value=92 Score=30.95 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNA 47 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 47 (487)
...|+|+-.++.|-..-+..||..|..+|..|.+++.+.++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 35677887889999999999999999999999999998775
No 265
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=53.21 E-value=1e+02 Score=31.45 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=27.0
Q ss_pred HHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEE
Q 046605 110 PLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVF 146 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 146 (487)
++.+.++..+||++|.. .....+|+++|+|++..
T Consensus 384 e~~~~i~~~~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 384 ELYKMLKEAKADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred HHHHHHhhcCCCEEEec---CchhhhhhhcCCCEEEc
Confidence 45566677899999998 45667999999999844
No 266
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.17 E-value=1.4e+02 Score=27.15 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=26.4
Q ss_pred HHHHHhh-CCCCEEEeCCCCcc---hHHHHHHhCCCeEEE
Q 046605 111 LEQLLQE-HKPDCLVADMFFPW---ATDAAAKFGIPRLVF 146 (487)
Q Consensus 111 l~~~l~~-~~pDlVI~D~~~~~---~~~~A~~~giP~v~~ 146 (487)
++.+++. .+-++.+.|+-+++ +..+|...|+|++.-
T Consensus 140 M~~~m~~Lk~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 140 MEKLMEALKERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred HHHHHHHHHHCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 3444444 36799999998874 566899999999864
No 267
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=52.87 E-value=26 Score=31.07 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
++.||++.+.++-.|-....-++..|..+|++|+++...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 367999999999999999999999999999999887754
No 268
>PRK11823 DNA repair protein RadA; Provisional
Probab=52.64 E-value=59 Score=32.91 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
.=+++.-.|+.|-..=++.++..+.++|..|.+++.+...+.+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 3456666789999999999999999899999999987655443
No 269
>PRK05748 replicative DNA helicase; Provisional
Probab=52.52 E-value=97 Score=31.39 Aligned_cols=43 Identities=12% Similarity=0.066 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFT-TRGVKASVITTPGNAPHL 50 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 50 (487)
-=+++...|+.|-..-.+.+|...+ ++|+.|.|++.+--.+.+
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 3466677889999999999999887 459999999887655444
No 270
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.50 E-value=1e+02 Score=26.08 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=55.1
Q ss_pred hhHHHHhhcCCcEeccCc-cccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHH
Q 046605 378 NSILEGVTAGVPLVTWPV-YAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKA 456 (487)
Q Consensus 378 gs~~eal~~GvP~l~~P~-~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~ 456 (487)
-|+.|--.+|.=.+.==- --=+..|++.. ++.|.=..+-.+ ..|.++|.++..+=|+++...+++..+.+
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVk--------g~~k~~Il~a~~~Rl~n~~e~E~~tAl~e 158 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVK--------GNTKDTILAAFERRLDNDREQEFATALAE 158 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeec--------CCCHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 366666666654332110 01146789999 699998888876 77899999999988886777889988888
Q ss_pred HHHHHH
Q 046605 457 FGEMAK 462 (487)
Q Consensus 457 l~~~~~ 462 (487)
+.+..+
T Consensus 159 I~rIA~ 164 (176)
T COG3195 159 IERIAL 164 (176)
T ss_pred HHHHHH
Confidence 887766
No 271
>PRK07206 hypothetical protein; Provisional
Probab=52.32 E-value=51 Score=32.90 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
++|+++-.... ...+++++.++|+++..++..
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 45677664333 346899999999999888875
No 272
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.93 E-value=35 Score=33.57 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=35.2
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
..=||+---|+-|--.=+++++..|+++| .|.+++.+.-...+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 34466667889999999999999999999 99999998654443
No 273
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=51.44 E-value=1.4e+02 Score=29.71 Aligned_cols=34 Identities=41% Similarity=0.427 Sum_probs=27.1
Q ss_pred HHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEE
Q 046605 110 PLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVF 146 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 146 (487)
++.+.++..+||++|..+. ...+|+++|+|++.+
T Consensus 347 e~~~~i~~~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEKKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhcCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 5566777779999999953 457899999999855
No 274
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=50.58 E-value=29 Score=35.22 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAP 48 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 48 (487)
.=+++.-.|+.|-..-++.++..+.++|+.|.+++.+...+
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~ 135 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQ 135 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHH
Confidence 34566667899999999999999999999999999875543
No 275
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=50.51 E-value=1.5e+02 Score=24.82 Aligned_cols=139 Identities=19% Similarity=0.255 Sum_probs=78.6
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHHhcCCcEEE-EecCCCCCCCcccccccCchhHHH---HhcCCCcEeecccchHhhh
Q 046605 288 VVYICFGSVANFTSAQLMEIAMGLEASGQNFIW-VVRKNKNNGGEEEKEDWLPEGFEK---RMEGKGLIIRGWAPQVLIL 363 (487)
Q Consensus 288 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~-~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~nv~~~~~vp~~~ll 363 (487)
.|-|-+||.+ +.+..+...+.|+++++.+-. +++.+. -|+.+.+ ..+..+
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHR-----------TPe~m~~ya~~a~~~g------------- 57 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHR-----------TPEKMFEYAEEAEERG------------- 57 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccC-----------CHHHHHHHHHHHHHCC-------------
Confidence 5777888877 567788888889988876544 444444 3433221 112222
Q ss_pred cccCccccccccCch----hHHHHhhcCCcEeccCccc---cchhhHHHHHHHhhceEeecccccccccCCccCHHHHHH
Q 046605 364 DHEAVGGFVTHCGWN----SILEGVTAGVPLVTWPVYA---EQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVK 436 (487)
Q Consensus 364 ~~~~~~~~I~HGG~g----s~~eal~~GvP~l~~P~~~---DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~ 436 (487)
++.+|.-.|.- ++..| ..=+|+|++|.-. +--+--.-++ ++--|+-+..- -.++..++.-|..
T Consensus 58 ----~~viIAgAGgAAHLPGmvAa-~T~lPViGVPv~s~~L~GlDSL~SiV-QMP~GvPVaTv----aIg~a~NAallAa 127 (162)
T COG0041 58 ----VKVIIAGAGGAAHLPGMVAA-KTPLPVIGVPVQSKALSGLDSLLSIV-QMPAGVPVATV----AIGNAANAALLAA 127 (162)
T ss_pred ----CeEEEecCcchhhcchhhhh-cCCCCeEeccCccccccchHHHHHHh-cCCCCCeeEEE----eecchhhHHHHHH
Confidence 33355544421 22333 3368999999752 2223333444 66666644322 0112344444444
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHh
Q 046605 437 AVNEIMMGDRAEEMRSRAKAFGEMAKRAVE 466 (487)
Q Consensus 437 ~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~ 466 (487)
.|-.+ . |++++++..++++.+++.+.
T Consensus 128 ~ILa~-~---d~~l~~kl~~~r~~~~~~V~ 153 (162)
T COG0041 128 QILAI-K---DPELAEKLAEFREAQTEEVL 153 (162)
T ss_pred HHHcC-C---CHHHHHHHHHHHHHHHHHHH
Confidence 44322 2 78999999999999996554
No 276
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.08 E-value=10 Score=32.09 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
||.++-.|.+|+ ++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666666664 78999999999999999974
No 277
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=49.98 E-value=89 Score=25.02 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=14.9
Q ss_pred hhHHHHHHHhhCCCCEEEeCC
Q 046605 107 LQKPLEQLLQEHKPDCLVADM 127 (487)
Q Consensus 107 ~~~~l~~~l~~~~pDlVI~D~ 127 (487)
+...+.+++++.+||+|++-.
T Consensus 88 ~~~~l~~~i~~~~p~~V~t~~ 108 (128)
T PF02585_consen 88 LVRDLEDLIREFRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHH-ESEEEEE-
T ss_pred HHHHHHHHHHHcCCCEEEECC
Confidence 355688888888999988754
No 278
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=49.38 E-value=30 Score=27.76 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
||++.+.++-.|..-..-++..|..+|++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 6899999999999999999999999999999998753
No 279
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=49.09 E-value=3.3e+02 Score=28.71 Aligned_cols=145 Identities=14% Similarity=0.198 Sum_probs=74.8
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhc
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILD 364 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~ 364 (487)
.++.|-|-+||.+ +....++....|+.+|..+-..+.+... .|+.+.+ ++-+..
T Consensus 409 ~~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sahr----------~~~~~~~-----------~~~~~~--- 462 (577)
T PLN02948 409 GTPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSAHR----------TPERMFS-----------YARSAH--- 462 (577)
T ss_pred CCCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECCcc----------CHHHHHH-----------HHHHHH---
Confidence 3556777777766 4566777777777777665554443321 4433321 111110
Q ss_pred ccCccccccccCchhHHHHhh---cCCcEeccCcccc---chhhHHHHHHHh--hceEee-cccccccccCCccCHHHHH
Q 046605 365 HEAVGGFVTHCGWNSILEGVT---AGVPLVTWPVYAE---QFYNEKIVNEVL--KIGIGV-GIQKWCRIVGDFVKREAIV 435 (487)
Q Consensus 365 ~~~~~~~I~HGG~gs~~eal~---~GvP~l~~P~~~D---Q~~~a~rv~~~~--G~G~~l-~~~~~~~~~~~~~~~~~l~ 435 (487)
...++.||.-.|.-.-+-... .-+|+|.+|.-.. -.+--.-++ ++ |+.+.. ..+ +..++.-+.
T Consensus 463 ~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~-~~p~g~pv~~v~i~-------~~~~aa~~a 534 (577)
T PLN02948 463 SRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIV-QMPRGVPVATVAIG-------NATNAGLLA 534 (577)
T ss_pred HCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHh-cCCCCCeEEEEecC-------ChHHHHHHH
Confidence 011223777666433332222 2589999997422 221112232 45 543222 222 244555444
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHhc
Q 046605 436 KAVNEIMMGDRAEEMRSRAKAFGEMAKRAVEN 467 (487)
Q Consensus 436 ~~i~~ll~~~~~~~~~~~a~~l~~~~~~a~~~ 467 (487)
. +||... |+.++++.+..++.+++.+.+
T Consensus 535 ~---~i~~~~-~~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 535 V---RMLGAS-DPDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred H---HHHhcC-CHHHHHHHHHHHHHHHHHHHh
Confidence 3 444311 678999999999998866544
No 280
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=49.00 E-value=23 Score=31.36 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+=|++.-+|+.|-..-.-.||++|.+++|+|.-.+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 4466777999999999999999999999998776653
No 281
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=48.94 E-value=61 Score=26.89 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=31.2
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecC
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRK 324 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~ 324 (487)
...+|++++||.-....+.+..+++.+. .+.++++....
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 3459999999999878888999988875 35788887665
No 282
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=48.37 E-value=70 Score=27.20 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=21.7
Q ss_pred ccccccccCch------hHHHHhhcCCcEeccC
Q 046605 368 VGGFVTHCGWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 368 ~~~~I~HGG~g------s~~eal~~GvP~l~~P 394 (487)
...+++|+|-| .+.+|...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 33378888854 6789999999999996
No 283
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=47.51 E-value=2.4e+02 Score=26.31 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLD 86 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 86 (487)
|+=|+++-.|+.|-..-...|.+.|.+.|.+|.++..+ .. + +. -.. +.
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~-------~~---------~-----~~-------~~~-y~--- 48 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD-------SL---------G-----ID-------RND-YA--- 48 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH-------HH---------H------T-------TSS-S----
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc-------cc---------c-----cc-------hhh-hh---
Confidence 34577778999999999999999999999999988863 21 1 10 000 00
Q ss_pred cchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc------chHHHHHHhCCCeEEEechhH
Q 046605 87 AITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP------WATDAAAKFGIPRLVFHGTSF 151 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~------~~~~~A~~~giP~v~~~~~~~ 151 (487)
+... ...... .+..++.+.+. +-++||+|...+ -.+.+|+.++.++..+.....
T Consensus 49 ~~~~---Ek~~R~------~l~s~v~r~ls--~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~ 108 (270)
T PF08433_consen 49 DSKK---EKEARG------SLKSAVERALS--KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCP 108 (270)
T ss_dssp -GGG---HHHHHH------HHHHHHHHHHT--T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--
T ss_pred chhh---hHHHHH------HHHHHHHHhhc--cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 0111 111111 12234445554 348999999765 246689999999998866533
No 284
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=46.89 E-value=1.5e+02 Score=29.73 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFT-TRGVKASVITTPGNAPHL 50 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 50 (487)
-|+++..++.|-..-...||..|. ++|..|.+++.+.++...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 455666779999999999999997 589999999998876543
No 285
>PRK09739 hypothetical protein; Provisional
Probab=46.71 E-value=46 Score=29.31 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=24.3
Q ss_pred CCceEEEEEc-CCCC-CChHH-HHHHHHHHHhCCCeEEEEe
Q 046605 5 ICQLHIFFFP-FLAH-GHMIP-TVDMAKLFTTRGVKASVIT 42 (487)
Q Consensus 5 ~~~~~Il~~~-~~~~-GH~~p-~l~La~~L~~rGh~Vt~~~ 42 (487)
|+||||+++. .|-. |...- .-.++++|.++||+|+++-
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4578898885 4433 22222 4456777788899998764
No 286
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=46.62 E-value=89 Score=29.98 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=29.5
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 13 FPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 13 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
++.|+.|-+=-.+.||++|.+||..+.+++-..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 368899999999999999999999999998753
No 287
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.45 E-value=97 Score=29.35 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=38.2
Q ss_pred ccCccccccccCchhHHHHhhc----CCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHH
Q 046605 365 HEAVGGFVTHCGWNSILEGVTA----GVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNE 440 (487)
Q Consensus 365 ~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ 440 (487)
.+++ +|+=||-||+++++.. ++|++.+... + +|. + . .++.+++.++|.+
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G--------~------lGF-l--~--------~~~~~~~~~~l~~ 114 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG--------R------LGF-L--T--------DIRPDELEFKLAE 114 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC--------c------ccc-c--c--------cCCHHHHHHHHHH
Confidence 3555 9999999999999753 6687777641 1 131 2 2 4678889999998
Q ss_pred HhcCc
Q 046605 441 IMMGD 445 (487)
Q Consensus 441 ll~~~ 445 (487)
+++|+
T Consensus 115 ~~~g~ 119 (295)
T PRK01231 115 VLDGH 119 (295)
T ss_pred HHcCC
Confidence 88744
No 288
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=46.05 E-value=1.7e+02 Score=28.80 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=27.6
Q ss_pred CceEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 6 CQLHIFFFP-FLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 6 ~~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
.+++|+++- .|..|. .+|+.|.++||+|+++....
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCc
Confidence 347888886 777774 68999999999999998643
No 289
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=46.00 E-value=38 Score=29.90 Aligned_cols=45 Identities=7% Similarity=-0.082 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
...+|++.+.++-.|-....-++..|..+|++|+++...--.+.+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~ 127 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTV 127 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 357999999999999999999999999999999999875443333
No 290
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=45.70 E-value=42 Score=33.15 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=32.0
Q ss_pred HhhhHHHHHHHhhCCCCEEEeCCCCcch----------HHHHHHhCCCeEEEe
Q 046605 105 TKLQKPLEQLLQEHKPDCLVADMFFPWA----------TDAAAKFGIPRLVFH 147 (487)
Q Consensus 105 ~~~~~~l~~~l~~~~pDlVI~D~~~~~~----------~~~A~~~giP~v~~~ 147 (487)
+...+.+.++++..+||++|+.+.|.++ ..+.+.++||.+.-.
T Consensus 62 eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 62 EEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4445678888889999999999977632 124567899988753
No 291
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=45.62 E-value=42 Score=33.16 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=32.2
Q ss_pred HhhhHHHHHHHhhCCCCEEEeCCCCcch----------HHHHHHhCCCeEEEe
Q 046605 105 TKLQKPLEQLLQEHKPDCLVADMFFPWA----------TDAAAKFGIPRLVFH 147 (487)
Q Consensus 105 ~~~~~~l~~~l~~~~pDlVI~D~~~~~~----------~~~A~~~giP~v~~~ 147 (487)
+...+.+.++++..+||++|+.+.|.++ ..+.+.++||.+.-.
T Consensus 62 eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 62 EEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4445678888899999999999977632 124567899988753
No 292
>PRK11519 tyrosine kinase; Provisional
Probab=45.46 E-value=79 Score=34.31 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=34.5
Q ss_pred CceEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 6 CQLHIFFFP--FLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 6 ~~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
++.|+++++ .|+-|-..-...||..|+..|++|.++-.+.....+
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~ 570 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYT 570 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcH
Confidence 345665554 568899999999999999999999999665444433
No 293
>PLN02939 transferase, transferring glycosyl groups
Probab=45.14 E-value=34 Score=37.75 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCceEEEEEcC---C--CCCCh-HHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 5 ICQLHIFFFPF---L--AHGHM-IPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 5 ~~~~~Il~~~~---~--~~GH~-~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
.++|||+|++. | -.|-+ .-.-.|.++|+++||+|.++++..-
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 56799999962 2 22333 3456899999999999999999653
No 294
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=45.13 E-value=2.1e+02 Score=25.02 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=57.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch-hhhhhhhhccCcceeEEEeeCCCccCCCCCCCcccccc
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL-SRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDAI 88 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v-~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~ 88 (487)
|.+++..+.|-....+.+|-.-.-+|.+|.++..=.-.... +...... .+.++.|+..+ +++......
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~--~~~~v~~~~~~---------~g~tw~~~~ 99 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEK--FGLGVEFHGMG---------EGFTWETQD 99 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHh--hccceeEEecC---------CceeCCCcC
Confidence 66777889999988888887777788888877542111000 1110111 12345555543 222221111
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc
Q 046605 89 TNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP 130 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~ 130 (487)
.. . . ..........-++.+++.++|+||.|-+.+
T Consensus 100 ~~----~---d-~~aa~~~w~~a~~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 100 RE----A---D-IAAAKAGWEHAKEALADGKYDLVILDELNY 133 (198)
T ss_pred cH----H---H-HHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 11 1 1 133334445667788888999999998765
No 295
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=44.87 E-value=18 Score=36.58 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=45.5
Q ss_pred hHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 046605 379 SILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDRAEEMRSRAKAFG 458 (487)
Q Consensus 379 s~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 458 (487)
++.||+++|.|+++.= +-.=+..+ +..--|...++. .-....+.+++.++.. |++++.++.+=+
T Consensus 381 v~IEAMa~glPvvAt~----~GGP~EiV-~~~~tG~l~dp~--------~e~~~~~a~~~~kl~~---~p~l~~~~~~~G 444 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATN----NGGPAEIV-VHGVTGLLIDPG--------QEAVAELADALLKLRR---DPELWARMGKNG 444 (495)
T ss_pred eeHHHHhcCCCEEEec----CCCceEEE-EcCCcceeeCCc--------hHHHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 7899999999999864 33345555 354556666543 3344479999999998 888877765544
Q ss_pred H
Q 046605 459 E 459 (487)
Q Consensus 459 ~ 459 (487)
.
T Consensus 445 ~ 445 (495)
T KOG0853|consen 445 L 445 (495)
T ss_pred H
Confidence 3
No 296
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=44.52 E-value=42 Score=29.28 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=36.7
Q ss_pred ceEEEEEc---CC-CCCChHH-HHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEee
Q 046605 7 QLHIFFFP---FL-AHGHMIP-TVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIK 70 (487)
Q Consensus 7 ~~~Il~~~---~~-~~GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~ 70 (487)
|.||+++- .| .+|=+-- .-.|+..|.++||+|+++|.....+.-... -.+++...+|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~-------y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE-------YNGVRLVYIP 62 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc-------cCCeEEEEeC
Confidence 45677774 34 3555544 457888888899999999987655332222 1256777775
No 297
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=44.52 E-value=20 Score=34.23 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=28.7
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 14 PFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 14 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
+.|+.|-+=-...|++.|.++|++|.+++-..-
T Consensus 37 tvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 69 (311)
T TIGR00682 37 SVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG 69 (311)
T ss_pred ccCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 478889988899999999999999999987543
No 298
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=44.20 E-value=29 Score=34.78 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=29.7
Q ss_pred HHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 109 KPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
.++.+++++.+||++|..+. ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 35677788889999999975 6668999999998774
No 299
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=43.76 E-value=35 Score=35.25 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=29.4
Q ss_pred HHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 109 KPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
.++.+.+++.+||+||.++ ....+|+.+|||++.++
T Consensus 364 ~ei~~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 4567777888999999996 45667899999999885
No 300
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=43.72 E-value=16 Score=31.74 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLS 51 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 51 (487)
||++.-.|+-|-+. ...+.+.|.++|++|.++.++...+.+.
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 35555555555444 4789999999999999999987665554
No 301
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=42.93 E-value=1.5e+02 Score=27.89 Aligned_cols=108 Identities=6% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe-CCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCc
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVIT-TPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWE 83 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~-~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~ 83 (487)
.+++||+|+..+..+.+..++.-.+.=.-...=+.+++ .+......++. ++.+..++ ... .
T Consensus 87 ~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~--------~~~-~ 148 (286)
T PRK13011 87 AARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH---------GIPFHHFP--------ITP-D 148 (286)
T ss_pred ccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHh---------CCCEEEeC--------CCc-C
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc-chHHHHHHhCCCeEEEech
Q 046605 84 NLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP-WATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~-~~~~~A~~~giP~v~~~~~ 149 (487)
+...... .+.+.+++.++|+||.-.+.- ....+-+.+.-..+-++++
T Consensus 149 ~~~~~~~-------------------~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 149 TKPQQEA-------------------QVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred chhhhHH-------------------HHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 302
>PRK13768 GTPase; Provisional
Probab=42.61 E-value=88 Score=28.84 Aligned_cols=37 Identities=14% Similarity=0.305 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
-++|...++.|-..-...++..|..+|++|.++..++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 3455556788999999999999999999999997654
No 303
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=42.47 E-value=71 Score=27.24 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=31.1
Q ss_pred hhhHHHHHHHhhCCCCEEEeCCCCcc---------------hHHHHHHhCCCeEEEech
Q 046605 106 KLQKPLEQLLQEHKPDCLVADMFFPW---------------ATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 106 ~~~~~l~~~l~~~~pDlVI~D~~~~~---------------~~~~A~~~giP~v~~~~~ 149 (487)
.+...+.+++++.+||.++.+..|+. ...++...|+|+.-+++.
T Consensus 48 ~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 48 QIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 34568888999999999998876543 122466668888877554
No 304
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=42.46 E-value=18 Score=31.24 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLS 51 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 51 (487)
||++.-.|+.| .+-...+.+.|.++|++|.++.++.-.+.+.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 56666666554 4455699999999999999999986555544
No 305
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=42.41 E-value=2.5e+02 Score=25.39 Aligned_cols=45 Identities=7% Similarity=-0.093 Sum_probs=35.3
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
+..-+++.-.|+.|-..-.+.++.+-+++|..|.+++.+...+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQV 64 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHH
Confidence 344567777889999998888887766889999999987765443
No 306
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=42.37 E-value=1.9e+02 Score=27.59 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
|||+|+..+. -.+...++|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 5788885443 346777888888999776654
No 307
>PRK00784 cobyric acid synthase; Provisional
Probab=42.34 E-value=2.8e+02 Score=28.47 Aligned_cols=35 Identities=9% Similarity=0.224 Sum_probs=28.0
Q ss_pred EEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 9 HIFFFPFL-AHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 9 ~Il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
.|+|.... .-|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 46666444 579999999999999999999886643
No 308
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=42.28 E-value=42 Score=30.63 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=28.1
Q ss_pred CCCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 4 GICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 4 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
.+..++|+++..-..-=..-+-.....|.++||+|++++-
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 4667888877544333344566677778999999999874
No 309
>PRK04940 hypothetical protein; Provisional
Probab=42.26 E-value=61 Score=28.07 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=25.7
Q ss_pred CCCEEEeCCCCc-chHHHHHHhCCCeEEEech
Q 046605 119 KPDCLVADMFFP-WATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 119 ~pDlVI~D~~~~-~~~~~A~~~giP~v~~~~~ 149 (487)
++++||..++-- ++..+|+++|+|.|.++|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 567888887644 7888999999999999764
No 310
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=42.16 E-value=1e+02 Score=25.95 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=24.5
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 046605 14 PFLAHGHMIPTVDMAKLFTTRGVKASVI 41 (487)
Q Consensus 14 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 41 (487)
+.+.-|-..-.+.|++.|.++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3457788899999999999999999886
No 311
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=42.14 E-value=38 Score=34.93 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 111 LEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 111 l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
+++++++.+||++|.++ .+..+|+.+|+|++.+.
T Consensus 429 l~~~l~~~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 429 LRSLVFTEPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHhhcCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 44555667899999886 46778999999999884
No 312
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=42.11 E-value=42 Score=33.82 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.6
Q ss_pred HHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 109 KPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
.++.++++..+||++|.++. ...+|+++|+|++.+.
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 45677777789999999974 5789999999999774
No 313
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=42.05 E-value=44 Score=32.75 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=63.3
Q ss_pred CCCcEee-cccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCccccchhhHHHHHHHhhceEeecccccccccC
Q 046605 348 GKGLIIR-GWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVG 426 (487)
Q Consensus 348 ~~nv~~~-~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~ 426 (487)
.+++... +..+..++|..+++ +||=- .+.+.|.++.++|+|....=.|.... . -|...+.....- -.
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~--rg~~~~~~~~~p-g~ 318 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------E--RGFYFDYEEDLP-GP 318 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------T--SSBSS-TTTSSS-S-
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------c--cCCCCchHhhCC-Cc
Confidence 4566654 34457889999998 99987 45899999999999987654444411 2 233332210000 00
Q ss_pred CccCHHHHHHHHHHHhcCchHH-HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 046605 427 DFVKREAIVKAVNEIMMGDRAE-EMRSRAKAFGEMAKRAVENGGSSSSNLNSLI 479 (487)
Q Consensus 427 ~~~~~~~l~~~i~~ll~~~~~~-~~~~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 479 (487)
-.-+.++|.++|.++++ ++ .++++-+++.+++-+ -.+|.+...|.+.|
T Consensus 319 ~~~~~~eL~~~i~~~~~---~~~~~~~~~~~~~~~~~~--~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 319 IVYNFEELIEAIENIIE---NPDEYKEKREKFRDKFFK--YNDGNSSERIVNYI 367 (369)
T ss_dssp EESSHHHHHHHHTTHHH---HHHHTHHHHHHHHHHHST--T--S-HHHHHHHHH
T ss_pred eeCCHHHHHHHHHhhhh---CCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHH
Confidence 03478999999999987 33 455666666766643 34455554455444
No 314
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=42.02 E-value=28 Score=31.66 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=32.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhh
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~ 53 (487)
|++.-.|+.+=+.-...|.+.|.++ ||+|.++.++...+.+...
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 4444444444447899999999999 9999999998766655543
No 315
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=42.02 E-value=41 Score=31.22 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
|.|.|..=|+-|-..-...||..|+++|++|.++=-+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4678887778899999999999999999999888443
No 316
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=42.00 E-value=44 Score=31.56 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
|||+|.-=|+-|-..-...||.+|+++|++|.++=-++.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 568888889999999999999999999999988855433
No 317
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=41.74 E-value=44 Score=33.68 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 109 KPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
.++.+++++.++|+||.++ ....+|+++|+|++.+.
T Consensus 363 ~~l~~~i~~~~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 363 EDLEDLACAAGADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHHHhhcCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 4677788888999999986 45779999999999873
No 318
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=41.35 E-value=12 Score=34.93 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCCccch
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTR-GVKASVITTPGNAPHL 50 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v 50 (487)
--+++...++.|-..-.+.++..++.. |+.|.|++.+.-.+.+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 345666778999999999999999877 9999999987654333
No 319
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=41.33 E-value=2.3e+02 Score=24.38 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVIT 42 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 42 (487)
--|.+++..+.|-..-.+.+|-..+.+|++|.++-
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677777899999999999999999999997774
No 320
>PRK07004 replicative DNA helicase; Provisional
Probab=41.22 E-value=1.8e+02 Score=29.53 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCCccch
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFT-TRGVKASVITTPGNAPHL 50 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~v 50 (487)
=|++...|+.|-..-++.+|..++ +.|+.|.|++-+--.+.+
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 356667889999999999998886 469999999887555443
No 321
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=41.15 E-value=33 Score=32.83 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
+.+|||+|+-.|+.| ..+|..|+++||+|+++....
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 356799999777776 346788999999999998764
No 322
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=41.13 E-value=42 Score=34.77 Aligned_cols=35 Identities=23% Similarity=0.453 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 110 PLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
++.+.+++.+||+||.++ ....+|+++|+|++.++
T Consensus 353 el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 566677778999999886 46678999999999875
No 323
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=41.11 E-value=1e+02 Score=28.29 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=39.9
Q ss_pred CCceEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 5 ICQLHIFFFP-FLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 5 ~~~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
++..|..|+- -|+-|-..-...||-.|++-+|.|.++++++.+..-.+.
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF 65 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAF 65 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHH
Confidence 4567777775 457789999999999999999999999999887654443
No 324
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.78 E-value=2e+02 Score=28.91 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHH-HhCCCeEEEEeCCCCccc
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLF-TTRGVKASVITTPGNAPH 49 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~ 49 (487)
-|+|+-.++.|-..-...||..+ ..+|+.|.+++.+.++..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a 266 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA 266 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh
Confidence 35566666999999999999876 678999999999876543
No 325
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=40.68 E-value=43 Score=33.71 Aligned_cols=37 Identities=11% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEec
Q 046605 109 KPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~ 148 (487)
.++.+.+++.+||+||.+. ....+|+.+|+|++.++.
T Consensus 360 ~e~~~~i~~~~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHHhhCCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 3466677778999999997 355578999999998854
No 326
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=40.68 E-value=48 Score=30.64 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
.--+++.-.|+.|...-..+++...+++|..|.+++.+...+.+.+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 34566777889999999999999999999999999998776665554
No 327
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=40.66 E-value=42 Score=34.68 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEec
Q 046605 110 PLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~ 148 (487)
++.+.+++.+||+||.++ ....+|.++|+|++.++.
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 566677778999999996 467789999999998854
No 328
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=40.61 E-value=42 Score=32.06 Aligned_cols=40 Identities=13% Similarity=-0.055 Sum_probs=31.9
Q ss_pred eEEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 046605 8 LHIFFFPFL---AHGHMIPTVDMAKLFTTRGVKASVITTPGNA 47 (487)
Q Consensus 8 ~~Il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 47 (487)
|||+|+.-| -.-+.+...+|.++..+|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 478888754 3356678899999999999999999997654
No 329
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=40.31 E-value=24 Score=32.33 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 22 IPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 22 ~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
.-.-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 346789999999999999999865
No 330
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=40.21 E-value=1.2e+02 Score=30.64 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
+||||++-.++..| +|++.|.+.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 57899988887776 578888888987777644
No 331
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=40.17 E-value=2.1e+02 Score=28.32 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRG-VKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~ 44 (487)
|++|+++-.|.-|+ .+|+-|+++| ++|+++.-.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCC
Confidence 56788887765554 5789999999 999999865
No 332
>PRK04148 hypothetical protein; Provisional
Probab=40.07 E-value=68 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+.++|+.+-.| .| ..+|..|++.||+|+.+=..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 34678888877 44 34688888999999988543
No 333
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.05 E-value=1.8e+02 Score=27.48 Aligned_cols=109 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCCCCCceEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCC--CccchhhhhhhhhccCcceeEEEeeCCCccC
Q 046605 1 MASGICQLHIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPG--NAPHLSRSIQKASELGIELDVKIIKFPSAEA 76 (487)
Q Consensus 1 m~~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~--~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~ 76 (487)
+....+++||+|+..+. -..+.+|.+..... +++|..+.+.. .....++. ++.+..+
T Consensus 83 l~~~~~~~ri~vl~Sg~---gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~------- 143 (286)
T PRK06027 83 LLDSAERKRVVILVSKE---DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERF---------GIPFHHV------- 143 (286)
T ss_pred EcccccCcEEEEEEcCC---CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHh---------CCCEEEe-------
Q ss_pred CCCCCCcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCc-chHHHHHHhCCCeEEEech
Q 046605 77 GLPEGWENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFP-WATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~-~~~~~A~~~giP~v~~~~~ 149 (487)
+........... .+.+.+++.+||+||.-.+.- ....+-..+.-.++-++++
T Consensus 144 --~~~~~~~~~~~~-------------------~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 144 --PVTKETKAEAEA-------------------RLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred --ccCccccchhHH-------------------HHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCcc
No 334
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=39.66 E-value=80 Score=32.39 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITT 43 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~ 43 (487)
||||++-.++..| +|++.|.+. |++|..+-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 5899988888877 578888776 899888854
No 335
>PRK08322 acetolactate synthase; Reviewed
Probab=39.37 E-value=1.1e+02 Score=32.01 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=22.4
Q ss_pred CccccccccCch------hHHHHhhcCCcEeccC
Q 046605 367 AVGGFVTHCGWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 367 ~~~~~I~HGG~g------s~~eal~~GvP~l~~P 394 (487)
+..++++|.|-| .+.+|...++|+|++.
T Consensus 63 ~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 344488887744 7899999999999985
No 336
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=39.36 E-value=47 Score=34.33 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLS 51 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 51 (487)
.--+++.-.++.|-..-...++.+.+++|..|.+++.+...+.+.
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~ 317 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLI 317 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHH
Confidence 345666677789999999999999999999999999876554443
No 337
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=39.22 E-value=56 Score=28.81 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=30.1
Q ss_pred eEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 8 LHIFFFP--FLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 8 ~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
+|++.++ -++-|-..-...||..|+++|++|.++=.+..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 5554443 45778899999999999999999988855433
No 338
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=39.22 E-value=47 Score=30.79 Aligned_cols=39 Identities=8% Similarity=0.173 Sum_probs=24.7
Q ss_pred cEEEEeccCcccCCHH-HHHHHHHHHHhc--CCcEEEEecCC
Q 046605 287 SVVYICFGSVANFTSA-QLMEIAMGLEAS--GQNFIWVVRKN 325 (487)
Q Consensus 287 ~~v~vs~Gs~~~~~~~-~~~~~~~a~~~~--~~~~i~~~~~~ 325 (487)
.+|++||||......+ .+..+.+.+++. ++.|.|+..+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4789999998875433 677777777654 78899987764
No 339
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=38.96 E-value=70 Score=27.26 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=31.5
Q ss_pred hHHHHHHHhhCCCCEEEeCCCCc---chHHHHHHhCCCeEEEec
Q 046605 108 QKPLEQLLQEHKPDCLVADMFFP---WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 108 ~~~l~~~l~~~~pDlVI~D~~~~---~~~~~A~~~giP~v~~~~ 148 (487)
.+.+.+++++.+||+|+.-.... .+..+|.++|.|++.-.+
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 34566677777899999877544 578899999999997654
No 340
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=38.83 E-value=28 Score=29.54 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVIT 42 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 42 (487)
|+||.|+-.+..| .++|+.|.++||+|+.+-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 5788888777555 589999999999998875
No 341
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=38.76 E-value=75 Score=25.21 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 9 HIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 9 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
||++..-++.|-......|++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999888765
No 342
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=38.56 E-value=47 Score=29.47 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
||+++++- .|++- ..||..|.+.||+|++.+...-
T Consensus 1 m~~~~i~G---tGniG--~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAIIG---TGNIG--SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEec---cChHH--HHHHHHHHhCCCeEEEecCCCh
Confidence 34555544 34433 5788999999999999977543
No 343
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=38.52 E-value=2.3e+02 Score=30.47 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=24.1
Q ss_pred HHHHHhhCCCCEEEeCCCC-cchHHHHHHhCCCeEEEech
Q 046605 111 LEQLLQEHKPDCLVADMFF-PWATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 111 l~~~l~~~~pDlVI~D~~~-~~~~~~A~~~giP~v~~~~~ 149 (487)
..+.+++.+||++|+-.+. .....+-......++-++++
T Consensus 67 ~~~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 67 WVERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 4455677899999876542 23444445555566777665
No 344
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=38.45 E-value=56 Score=29.27 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
++.||++.+.++-.|-....-++..|..+|++|+++...--
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp 127 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVP 127 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 46799999999999999999999999999999999986543
No 345
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=38.42 E-value=33 Score=34.08 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSR 52 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 52 (487)
++++||++.-.|+. ..+=...+.+.|.++|++|.++.++...+.+..
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 46778988877766 455778999999999999999999876665554
No 346
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=38.19 E-value=51 Score=30.57 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVIT 42 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 42 (487)
|+|.|..=|+-|-..-...||.+|+++|++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45777766788888999999999999999999883
No 347
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=38.12 E-value=91 Score=26.87 Aligned_cols=105 Identities=23% Similarity=0.360 Sum_probs=66.8
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhc
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILD 364 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~ 364 (487)
.+.+-.+.+|.+. ..+++.+..+|.+|+..-...... .... ...+ .+.+-.++|+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~~~-----------~~~~----~~~~---~~~~l~ell~ 90 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPKPE-----------EGAD----EFGV---EYVSLDELLA 90 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCHHH-----------HHHH----HTTE---EESSHHHHHH
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCChh-----------hhcc----cccc---eeeehhhhcc
Confidence 4558889999887 466777778899888776654310 0010 1112 5667888999
Q ss_pred ccCccccccccCchhHHHHhhcCCcEeccCcc--ccchhhHHHHHHHhhceEe-ecccccccccCCccCHHHHHHHHHH
Q 046605 365 HEAVGGFVTHCGWNSILEGVTAGVPLVTWPVY--AEQFYNEKIVNEVLKIGIG-VGIQKWCRIVGDFVKREAIVKAVNE 440 (487)
Q Consensus 365 ~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~~--~DQ~~~a~rv~~~~G~G~~-l~~~~~~~~~~~~~~~~~l~~~i~~ 440 (487)
.+++ ++.|. |.. .....++..+ +.++=|.. ++.. |++-++.++|.++++.
T Consensus 91 ~aDi--v~~~~------------------plt~~T~~li~~~~l-~~mk~ga~lvN~a-----RG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 91 QADI--VSLHL------------------PLTPETRGLINAEFL-AKMKPGAVLVNVA-----RGELVDEDALLDALES 143 (178)
T ss_dssp H-SE--EEE-S------------------SSSTTTTTSBSHHHH-HTSTTTEEEEESS-----SGGGB-HHHHHHHHHT
T ss_pred hhhh--hhhhh------------------ccccccceeeeeeee-eccccceEEEecc-----chhhhhhhHHHHHHhh
Confidence 9998 77775 543 3567788888 58876644 4444 5567888888888754
No 348
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=37.94 E-value=56 Score=28.81 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCCChHHHHH-HHHHHHh-CCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVD-MAKLFTT-RGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~-La~~L~~-rGh~Vt~~~~~ 44 (487)
|+||+++-+...||..-+.. +++.+.+ .|++|.++.-+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 35898888888899998776 5666766 89999888753
No 349
>PRK05380 pyrG CTP synthetase; Validated
Probab=37.85 E-value=4.3e+02 Score=27.39 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=34.6
Q ss_pred ceEEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 046605 7 QLHIFFFPFL---AHGHMIPTVDMAKLFTTRGVKASVITTPGNAPH 49 (487)
Q Consensus 7 ~~~Il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 49 (487)
|+|.+|++.+ +.|-=.-...|+..|..||+.|++.=-+++.+.
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNv 46 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINV 46 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccc
Confidence 4678888866 556667888999999999999999987766544
No 350
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=37.80 E-value=1.2e+02 Score=29.45 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGV-KASVITTP 44 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~ 44 (487)
.+.+||+++-.++.| -.+|+.|++.|+ +++++=.+
T Consensus 22 L~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 22 IREKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hcCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 456789999888776 678999999998 56666443
No 351
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=37.50 E-value=1.1e+02 Score=25.92 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhH-HHHhcCCCcE
Q 046605 274 QECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGF-EKRMEGKGLI 352 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~-~~~~~~~nv~ 352 (487)
.++-++|...+ ..+++-| .........++..+.+-+++=+ +|..+ ..........
T Consensus 21 ~~lg~~La~~g---~~lv~Gg-----~~GlM~a~a~ga~~~gg~viGV----------------lp~~l~~~~~~~~~~i 76 (159)
T TIGR00725 21 YRLGKELAKKG---HILINGG-----RTGVMEAVSKGAREAGGLVVGI----------------LPDEDFAGNPYLTIKV 76 (159)
T ss_pred HHHHHHHHHCC---CEEEcCC-----chhHHHHHHHHHHHCCCeEEEE----------------CChhhccCCCCceEEE
Q ss_pred eecc-cchHhhhcccCccccccccCchhHHHH---hhcCCcEeccC
Q 046605 353 IRGW-APQVLILDHEAVGGFVTHCGWNSILEG---VTAGVPLVTWP 394 (487)
Q Consensus 353 ~~~~-vp~~~ll~~~~~~~~I~HGG~gs~~ea---l~~GvP~l~~P 394 (487)
..++ .+-+.++...+-..++--||.||..|. +.+++|+++++
T Consensus 77 ~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~ 122 (159)
T TIGR00725 77 KTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLR 122 (159)
T ss_pred ECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEE
No 352
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=37.35 E-value=1.2e+02 Score=31.92 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=21.8
Q ss_pred ccccccccCc------hhHHHHhhcCCcEeccC
Q 046605 368 VGGFVTHCGW------NSILEGVTAGVPLVTWP 394 (487)
Q Consensus 368 ~~~~I~HGG~------gs~~eal~~GvP~l~~P 394 (487)
..++++|.|- +.+++|.+.++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4448888774 48899999999999984
No 353
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=37.30 E-value=1.9e+02 Score=29.08 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=21.8
Q ss_pred ccccccccCch------hHHHHhhcCCcEeccC
Q 046605 368 VGGFVTHCGWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 368 ~~~~I~HGG~g------s~~eal~~GvP~l~~P 394 (487)
..++++|.|-| .+++|.+.++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 44488888754 7889999999999993
No 354
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=37.29 E-value=55 Score=32.80 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=26.1
Q ss_pred HHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 113 QLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 113 ~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
+.++..+||++|..+ .+..+|+++|||.+.+.
T Consensus 344 ~~~~~~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEEYRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhhcCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 445567999999884 47779999999999874
No 355
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.02 E-value=47 Score=31.63 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=38.5
Q ss_pred cccCccccccccCchhHHHHhhc----CCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHH
Q 046605 364 DHEAVGGFVTHCGWNSILEGVTA----GVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVN 439 (487)
Q Consensus 364 ~~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~ 439 (487)
..+++ +|+=||=||++.|... ++|++++... + +|... .+.++++.+++.
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------~------lGFL~-----------~~~~~~~~~~l~ 123 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------H------VGFLA-----------EAEAEDLDEAVE 123 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------C------Cceec-----------cCCHHHHHHHHH
Confidence 34555 9999999999998764 7888887641 1 13222 456788888888
Q ss_pred HHhcCc
Q 046605 440 EIMMGD 445 (487)
Q Consensus 440 ~ll~~~ 445 (487)
++++|+
T Consensus 124 ~i~~g~ 129 (306)
T PRK03372 124 RVVDRD 129 (306)
T ss_pred HHHcCC
Confidence 888744
No 356
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=36.90 E-value=63 Score=28.52 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
+.||.+=..|+-|-.+.|+.=|++|.++|.+|++..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 5788888999999999999999999999999998876543
No 357
>PLN02929 NADH kinase
Probab=36.75 E-value=35 Score=32.30 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=41.8
Q ss_pred ccCccccccccCchhHHHHhh---cCCcEeccCcccc------chhhHHHHHHHhhceEeecccccccccCCccCHHHHH
Q 046605 365 HEAVGGFVTHCGWNSILEGVT---AGVPLVTWPVYAE------QFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIV 435 (487)
Q Consensus 365 ~~~~~~~I~HGG~gs~~eal~---~GvP~l~~P~~~D------Q~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~ 435 (487)
.+++ +|+-||=||++.|.. .++|++++=.-.- +..+.-.. .--+|--. .++.+++.
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL~-----------~~~~~~~~ 128 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHLC-----------AATAEDFE 128 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCccccc-----------cCCHHHHH
Confidence 3455 999999999999855 4688888764311 11122100 11234322 46789999
Q ss_pred HHHHHHhcCc
Q 046605 436 KAVNEIMMGD 445 (487)
Q Consensus 436 ~~i~~ll~~~ 445 (487)
++|.++++|+
T Consensus 129 ~~L~~il~g~ 138 (301)
T PLN02929 129 QVLDDVLFGR 138 (301)
T ss_pred HHHHHHHcCC
Confidence 9999999754
No 358
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.50 E-value=61 Score=27.98 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=23.5
Q ss_pred HHHhhCCCCEEEeCCCCcc--hHHHHHHhCCCeEEEe
Q 046605 113 QLLQEHKPDCLVADMFFPW--ATDAAAKFGIPRLVFH 147 (487)
Q Consensus 113 ~~l~~~~pDlVI~D~~~~~--~~~~A~~~giP~v~~~ 147 (487)
+.+...+||+||+...+.. ....-+..|||++.+.
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3344479999998654432 3444577899998874
No 359
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=36.45 E-value=71 Score=29.53 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=31.5
Q ss_pred hHHHHHHHhhCCCCEEEe-----CCCCc-chHHHHHHhCCCeEEEec
Q 046605 108 QKPLEQLLQEHKPDCLVA-----DMFFP-WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 108 ~~~l~~~l~~~~pDlVI~-----D~~~~-~~~~~A~~~giP~v~~~~ 148 (487)
...+.+.++..++|+|++ |.-+. -+..+|+.+|.|++.+..
T Consensus 100 a~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 100 AKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 346777788889999995 44333 578899999999998754
No 360
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=36.40 E-value=80 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=23.0
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhcC
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEASG 315 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~ 315 (487)
.+..+|+++||....+.+.+...++.++..+
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 3458999999998766667777777776643
No 361
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.34 E-value=56 Score=20.87 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 046605 430 KREAIVKAVNEIMMGDRAEEMRSRAKAFG 458 (487)
Q Consensus 430 ~~~~l~~~i~~ll~~~~~~~~~~~a~~l~ 458 (487)
|+++|..||..+.+|. -++++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 5789999999999833 47887777653
No 362
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=36.20 E-value=33 Score=31.04 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 046605 24 TVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~~~ 43 (487)
-.+||++|.++|++|+++..
T Consensus 28 G~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHCCCEEEEEcC
Confidence 35889999999999998753
No 363
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=36.17 E-value=69 Score=30.32 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+|.+|.|..=|+-|-..-...||..|+++|++|.++=.+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 445666666668889999999999999999999999443
No 364
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=36.16 E-value=3.6e+02 Score=25.08 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=29.7
Q ss_pred cccchHhhhcccCccccccccCchhHHHHhhcCCcEecc
Q 046605 355 GWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTW 393 (487)
Q Consensus 355 ~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~ 393 (487)
++=|+.+.|+.++. .++|--..+-..||...|+|+.++
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 45688899988776 345666678889999999999654
No 365
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=36.06 E-value=1.6e+02 Score=25.55 Aligned_cols=24 Identities=8% Similarity=0.067 Sum_probs=20.3
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhC
Q 046605 11 FFFPFLAHGHMIPTVDMAKLFTTR 34 (487)
Q Consensus 11 l~~~~~~~GH~~p~l~La~~L~~r 34 (487)
.++-.|+-||..=|++|.+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 445578999999999999999776
No 366
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=35.96 E-value=68 Score=29.34 Aligned_cols=38 Identities=16% Similarity=0.029 Sum_probs=31.3
Q ss_pred ceEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFP-FLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
|+.|++.+ -|+-|-..-..+||..|++.|++|..+=-.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 44566664 668899999999999999999999888543
No 367
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=35.65 E-value=96 Score=27.17 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=28.9
Q ss_pred hHHHHHHHhhCCCCEEEeCCC--CcchHHHHHHhCCCeEEEe
Q 046605 108 QKPLEQLLQEHKPDCLVADMF--FPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 108 ~~~l~~~l~~~~pDlVI~D~~--~~~~~~~A~~~giP~v~~~ 147 (487)
...+.+.++..++|+|++=.. ++.|..+|..+|+|++.+.
T Consensus 39 ~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 39 GKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 344555555678999986432 3368889999999999884
No 368
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=35.56 E-value=82 Score=28.38 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=26.3
Q ss_pred HHHHHHhhCCCCEEEeCCCCc--chHHHHHH----hCCCeEEEechh
Q 046605 110 PLEQLLQEHKPDCLVADMFFP--WATDAAAK----FGIPRLVFHGTS 150 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~----~giP~v~~~~~~ 150 (487)
...+.++.++||++|+-+--. .+..-|+. .|+|+|+++-.+
T Consensus 51 ~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 51 VVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCC
Confidence 345567789999977554322 34444444 499999996543
No 369
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=35.45 E-value=34 Score=29.51 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=30.5
Q ss_pred EEEEcCCCCCChHH-HHHHHHHHHh-CCCeEEEEeCCCCccchh
Q 046605 10 IFFFPFLAHGHMIP-TVDMAKLFTT-RGVKASVITTPGNAPHLS 51 (487)
Q Consensus 10 Il~~~~~~~GH~~p-~l~La~~L~~-rGh~Vt~~~~~~~~~~v~ 51 (487)
|++.-.++ ||... ...+.+.|.+ +||+|.++.++...+.++
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 44444444 77765 8899999984 599999999987765554
No 370
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=35.31 E-value=2.1e+02 Score=27.06 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNA 47 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 47 (487)
++..|+|+-.++.|-..-+..|+..|.++|+.|.++..+...
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345566666779999999999999999999999988876443
No 371
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=35.15 E-value=37 Score=30.69 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 20 HMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 20 H~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
|+..|...|++|.++||+|+++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4568999999999999999999886
No 372
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=35.14 E-value=1e+02 Score=26.68 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=29.0
Q ss_pred HHHHHHhhCCCCEEEeCC--CCcchHHHHHHhCCCeEEE
Q 046605 110 PLEQLLQEHKPDCLVADM--FFPWATDAAAKFGIPRLVF 146 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~--~~~~~~~~A~~~giP~v~~ 146 (487)
.+.+.++..++|.|++=. -+..|..+|..+|+|+|.+
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 566666667899999644 2447888999999999987
No 373
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=34.92 E-value=1.7e+02 Score=30.78 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=21.5
Q ss_pred ccccccccCch------hHHHHhhcCCcEeccC
Q 046605 368 VGGFVTHCGWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 368 ~~~~I~HGG~g------s~~eal~~GvP~l~~P 394 (487)
..++++|.|-| .+++|...++|+|++.
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 33477787744 7799999999999996
No 374
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.81 E-value=72 Score=26.16 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
.+|++.+..+.+|-.----++..|.++|++|......--
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~ 40 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSP 40 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCC
Confidence 579999999999999999999999999999999877544
No 375
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=34.65 E-value=65 Score=30.29 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCch
Q 046605 299 FTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWN 378 (487)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~g 378 (487)
.+.+....+.+|+.+-..+.||.+.+.... .++.++++...+-++++. ||=..-..
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga----------------------~rlL~~ld~~~~~~~pK~--~iGySDiT 101 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGA----------------------NRLLPYLDYDLIRANPKI--FVGYSDIT 101 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCH----------------------HHhhhhCCHHHHhhCCeE--EEEecHHH
Confidence 456668889999999999999998886531 334444555545455555 66666666
Q ss_pred hHHHHhhc--CCcEeccCc
Q 046605 379 SILEGVTA--GVPLVTWPV 395 (487)
Q Consensus 379 s~~eal~~--GvP~l~~P~ 395 (487)
+++-+++. |++.+.=|.
T Consensus 102 aL~~~l~~~~g~~t~hGp~ 120 (282)
T cd07025 102 ALHLALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHHHHHhcCceEEECcc
Confidence 66666543 566655554
No 376
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=34.54 E-value=1e+02 Score=26.28 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccc--------hHhhhcccCccccccccC
Q 046605 305 MEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAP--------QVLILDHEAVGGFVTHCG 376 (487)
Q Consensus 305 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp--------~~~ll~~~~~~~~I~HGG 376 (487)
+.+++.|.+.|.+.++-+++.... . +-+.+.. .++++++.-.. .-.-....+..++++|.|
T Consensus 5 ~~l~~~L~~~Gv~~vfgvpG~~~~----~----l~~al~~---~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~G 73 (172)
T PF02776_consen 5 EALAEALKANGVTHVFGVPGSGNL----P----LLDALEK---SPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSG 73 (172)
T ss_dssp HHHHHHHHHTT-SEEEEE--GGGH----H----HHHHHHH---TTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETT
T ss_pred HHHHHHHHHCCCeEEEEEeChhHh----H----HHHHhhh---hcceeeecccCcchhHHHHHHHHHhhccceEEEeecc
Confidence 456667777777777776665421 0 1111111 12444433222 111111133344888887
Q ss_pred c------hhHHHHhhcCCcEeccCcc
Q 046605 377 W------NSILEGVTAGVPLVTWPVY 396 (487)
Q Consensus 377 ~------gs~~eal~~GvP~l~~P~~ 396 (487)
- +++.+|...++|+|++.-.
T Consensus 74 pG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 74 PGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp HHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred cchHHHHHHHhhcccceeeEEEEecc
Confidence 4 4788899999999998753
No 377
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=34.52 E-value=3.3e+02 Score=24.08 Aligned_cols=146 Identities=14% Similarity=0.046 Sum_probs=75.8
Q ss_pred CCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhc
Q 046605 285 PNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILD 364 (487)
Q Consensus 285 ~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~ 364 (487)
.+.++.|+-|.++ ...+..|.+.|.++.+.... +.+.+........+.......+..-+.
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~-------------~~~~l~~l~~~~~i~~~~~~~~~~~l~ 69 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE-------------LTENLVKLVEEGKIRWKQKEFEPSDIV 69 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC-------------CCHHHHHHHhCCCEEEEecCCChhhcC
Confidence 4568888877665 33445566677777666332 111222222223454444444455666
Q ss_pred ccCccccccccCchhHHHHhh----cCCcEeccCccccchhhH-----HHHHHHhhceEeecccccccccCCccCHHHHH
Q 046605 365 HEAVGGFVTHCGWNSILEGVT----AGVPLVTWPVYAEQFYNE-----KIVNEVLKIGIGVGIQKWCRIVGDFVKREAIV 435 (487)
Q Consensus 365 ~~~~~~~I~HGG~gs~~eal~----~GvP~l~~P~~~DQ~~~a-----~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~ 435 (487)
.+++ +|.--+...+.+.++ .++++-+ .|.+..+ ..+ ++-++-+.+.... . .-.-+..|+
T Consensus 70 ~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~G----~-sP~la~~lr 137 (202)
T PRK06718 70 DAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTDG----A-SPKLAKKIR 137 (202)
T ss_pred CceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECCC----C-ChHHHHHHH
Confidence 6676 777767666666554 4555433 2332222 222 2333334443320 0 123346688
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 046605 436 KAVNEIMMGDRAEEMRSRAKAFGEMAKR 463 (487)
Q Consensus 436 ~~i~~ll~~~~~~~~~~~a~~l~~~~~~ 463 (487)
+.|.+++. +....+-+.+.++++.+++
T Consensus 138 ~~ie~~~~-~~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 138 DELEALYD-ESYESYIDFLYECRQKIKE 164 (202)
T ss_pred HHHHHHcc-hhHHHHHHHHHHHHHHHHH
Confidence 88888774 2234566677777776663
No 378
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=34.44 E-value=41 Score=31.86 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
|||+|+-.|..| ..+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 478888777665 4578889999999999987
No 379
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=34.29 E-value=1.2e+02 Score=28.79 Aligned_cols=129 Identities=20% Similarity=0.345 Sum_probs=73.6
Q ss_pred hhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEe
Q 046605 274 QECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLII 353 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~ 353 (487)
+++.++++.-....+-.-++||.++ ..++++.++.|.+.+.++.... +..+..+|-. .+.+.+
T Consensus 5 ~~ileil~~Y~~~~i~Iat~gSHSa------L~Il~GAK~EGF~Ti~v~~~gr-----~~~Y~~f~~a------~e~i~v 67 (361)
T COG1759 5 KEILEILENYDLEDITIATIGSHSA------LQILDGAKEEGFRTIAVCQRGR-----EKPYEKFPVA------DEVIIV 67 (361)
T ss_pred HHHHHHHHhccccceEEEEeecchH------HHHhhhHHhcCCcEEEEEecCc-----cchHHhhchh------heEEEe
Confidence 4555566554222366677888775 3567788888998888777544 2333223311 144555
Q ss_pred ecccc------hHhhhcccCccccccccCchhHHHHhhcC---------CcEeccCc---c-ccchhhHHHHHHHhhceE
Q 046605 354 RGWAP------QVLILDHEAVGGFVTHCGWNSILEGVTAG---------VPLVTWPV---Y-AEQFYNEKIVNEVLKIGI 414 (487)
Q Consensus 354 ~~~vp------~~~ll~~~~~~~~I~HGG~gs~~eal~~G---------vP~l~~P~---~-~DQ~~~a~rv~~~~G~G~ 414 (487)
.+|-. |..++....+ ||-||.. +.|.| ||+.+-=. | .||..--.-+ + ++|+
T Consensus 68 ~~f~dil~~~iqe~L~~~n~I--~IP~gSf-----v~Y~G~d~ie~~~~vP~fGnR~lLrwE~~~~~~~~lL-e--kAgi 137 (361)
T COG1759 68 DKFSDILNEEIQEELRELNAI--FIPHGSF-----VAYVGYDGIENEFEVPMFGNRELLRWEEDRKLEYKLL-E--KAGL 137 (361)
T ss_pred chhHHHhhHHHHHHHHHcCeE--EecCCce-----EEEecchhhhhcccCcccccHhHhhhhcchhhHHHHH-H--HcCC
Confidence 56644 3457777777 8888875 33333 44443321 1 2566555555 3 5677
Q ss_pred eecccccccccCCccCHHHHHHH
Q 046605 415 GVGIQKWCRIVGDFVKREAIVKA 437 (487)
Q Consensus 415 ~l~~~~~~~~~~~~~~~~~l~~~ 437 (487)
.+... --++|+|-+-
T Consensus 138 ~~P~~--------~~~PeeIdr~ 152 (361)
T COG1759 138 RIPKK--------YKSPEEIDRP 152 (361)
T ss_pred CCCcc--------cCChHHcCCc
Confidence 77664 3457777653
No 380
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=34.23 E-value=4.4e+02 Score=27.35 Aligned_cols=45 Identities=29% Similarity=0.477 Sum_probs=36.0
Q ss_pred hhHHHHHHHhhCCCCEEE----eCCCCcchHHHHHHhCCCeEEEechhH
Q 046605 107 LQKPLEQLLQEHKPDCLV----ADMFFPWATDAAAKFGIPRLVFHGTSF 151 (487)
Q Consensus 107 ~~~~l~~~l~~~~pDlVI----~D~~~~~~~~~A~~~giP~v~~~~~~~ 151 (487)
+...++..++...+|-+| ||-..+.....|.++++|.|.+...+.
T Consensus 77 IAdsiE~~~~~~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm 125 (535)
T TIGR00110 77 IADSVETMVNAHRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPM 125 (535)
T ss_pred HHHHHHHHHhcCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 445677778889999877 787777888889999999999976543
No 381
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=34.12 E-value=33 Score=33.98 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSR 52 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 52 (487)
+.+||++.-.|+.|= +-...+.+.|.++|++|.++.++...+.+..
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 356888887776554 5589999999999999999999876666554
No 382
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=34.08 E-value=89 Score=28.29 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=34.5
Q ss_pred EEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccch
Q 046605 10 IFFFP-FLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHL 50 (487)
Q Consensus 10 Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v 50 (487)
|.|++ =|+.|-..-.+.||.+|+++|-.|+++=.++++...
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 44444 468999999999999999999999999888777654
No 383
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=33.99 E-value=67 Score=29.72 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
..|+|+.=|+-|-..-...||..|+++|++|.++=-+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 35777766788999999999999999999999985443
No 384
>PRK13604 luxD acyl transferase; Provisional
Probab=33.98 E-value=80 Score=30.06 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=30.0
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVIT 42 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 42 (487)
++.+++++..+..++-.-+..+|+.|.++|+.|..+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3446778888888887779999999999999987663
No 385
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=33.41 E-value=3.5e+02 Score=25.56 Aligned_cols=94 Identities=12% Similarity=-0.019 Sum_probs=53.1
Q ss_pred hhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcE
Q 046605 273 EQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLI 352 (487)
Q Consensus 273 ~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~ 352 (487)
-.++.......+-+++-+-........+...+..+.++++++|..+++-+|..... . .+ ...-
T Consensus 115 ~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~---------~--~~------~~~~ 177 (293)
T COG2159 115 AEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG---------A--GL------EKGH 177 (293)
T ss_pred HHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC---------c--cc------ccCC
Confidence 35666666654333333333333333455558899999999999999977765421 0 00 0000
Q ss_pred eecccchHhhhcccCccccccccC--chhHHHH
Q 046605 353 IRGWAPQVLILDHEAVGGFVTHCG--WNSILEG 383 (487)
Q Consensus 353 ~~~~vp~~~ll~~~~~~~~I~HGG--~gs~~ea 383 (487)
.....=....-+.|+++.++.|.| ..=..|+
T Consensus 178 ~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 178 SDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred CCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 111111334556689999999999 4444444
No 386
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.32 E-value=69 Score=33.30 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=30.3
Q ss_pred ceEEEEEc-------CCCCCChHHHH---HHHHHHHhCCCeEEEEeCCCCc
Q 046605 7 QLHIFFFP-------FLAHGHMIPTV---DMAKLFTTRGVKASVITTPGNA 47 (487)
Q Consensus 7 ~~~Il~~~-------~~~~GH~~p~l---~La~~L~~rGh~Vt~~~~~~~~ 47 (487)
+.+++|.+ .+-.||+++++ .+|+-++-+||+|.|+|..+-.
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeH 54 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEH 54 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCC
Confidence 46677765 23559999766 4688888899999999975443
No 387
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=33.11 E-value=1.8e+02 Score=28.11 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAP 48 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 48 (487)
+...|.|.-.++.|-..-+-.|+..|.++|++|.++..++...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 4456788888999999999999999999999999998876543
No 388
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.09 E-value=85 Score=29.88 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
.+|||.|+-.|..| .++|+.|.++||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 45789999777666 578999999999999887653
No 389
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=33.04 E-value=3.9e+02 Score=25.09 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=33.9
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
.+++|+++-.|..|. .+|+.|.++||.|.++..+...+.....
T Consensus 2 ~~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 2 ASMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CCcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 357888888887775 4799999999999999888776555443
No 390
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=32.98 E-value=98 Score=23.62 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHHHHHHhhCCCCEEEeCCC-Cc-chHHHHHHhCCCeE
Q 046605 109 KPLEQLLQEHKPDCLVADMF-FP-WATDAAAKFGIPRL 144 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~-~~-~~~~~A~~~giP~v 144 (487)
.++.+.++....|+||.|.- ++ -...+.+.+|++++
T Consensus 47 eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 47 EEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 46667777789999999884 44 46678889998865
No 391
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=32.78 E-value=57 Score=32.68 Aligned_cols=33 Identities=15% Similarity=0.066 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
+++||.|+-.|..| +.+|..|+++||+|+.+-.
T Consensus 2 ~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 2 SFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 46789888655444 5789999999999998864
No 392
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=32.66 E-value=45 Score=31.54 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
|||+|+-.|..| ..+|..|.++||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 467787776665 5678889999999999987
No 393
>PRK11269 glyoxylate carboligase; Provisional
Probab=32.48 E-value=1.8e+02 Score=30.72 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=21.5
Q ss_pred ccccccccC------chhHHHHhhcCCcEeccC
Q 046605 368 VGGFVTHCG------WNSILEGVTAGVPLVTWP 394 (487)
Q Consensus 368 ~~~~I~HGG------~gs~~eal~~GvP~l~~P 394 (487)
..++++|.| .+.+++|.+.++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 444666666 678999999999999985
No 394
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=32.47 E-value=45 Score=32.22 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
||||+|+-.|..| ..+|..|+++||+|+++...
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 4689999777766 45788899999999999864
No 395
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=32.37 E-value=4.6e+02 Score=27.66 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=36.4
Q ss_pred hhHHHHHHHhhCCCCEEE----eCCCCcchHHHHHHhCCCeEEEechhHH
Q 046605 107 LQKPLEQLLQEHKPDCLV----ADMFFPWATDAAAKFGIPRLVFHGTSFF 152 (487)
Q Consensus 107 ~~~~l~~~l~~~~pDlVI----~D~~~~~~~~~A~~~giP~v~~~~~~~~ 152 (487)
+...++..++...+|-+| ||-..+.....|.++++|.|.+...+..
T Consensus 99 IAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm~ 148 (615)
T PRK12448 99 IADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPME 148 (615)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCcC
Confidence 445677778889999877 7777778888999999999999765433
No 396
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=32.29 E-value=5.3e+02 Score=27.86 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=29.0
Q ss_pred EEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 9 HIFFFPFL-AHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 9 ~Il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
.|.+.+.. ..|-..-.+.|++.|.++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 46666544 579999999999999999999998754
No 397
>PHA02754 hypothetical protein; Provisional
Probab=32.22 E-value=94 Score=20.94 Aligned_cols=22 Identities=5% Similarity=0.368 Sum_probs=17.4
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHH
Q 046605 438 VNEIMMGDRAEEMRSRAKAFGEMAK 462 (487)
Q Consensus 438 i~~ll~~~~~~~~~~~a~~l~~~~~ 462 (487)
|.+++. ++.|++.+++++..+.
T Consensus 7 i~k~i~---eK~Fke~MRelkD~LS 28 (67)
T PHA02754 7 IPKAIM---EKDFKEAMRELKDILS 28 (67)
T ss_pred HHHHHH---HhHHHHHHHHHHHHHh
Confidence 444555 7899999999999988
No 398
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=32.12 E-value=2.5e+02 Score=25.77 Aligned_cols=38 Identities=32% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCCCEEEeCCCCcc------hHHHHHHhCCCeEEE
Q 046605 109 KPLEQLLQEHKPDCLVADMFFPW------ATDAAAKFGIPRLVF 146 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~~~~------~~~~A~~~giP~v~~ 146 (487)
+.+.+++++.+.|+||=-.+-++ +..+|+..|||++.+
T Consensus 56 e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 56 EGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 36788888889999984444332 455788889998876
No 399
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=32.12 E-value=44 Score=33.85 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
|||+|+--|-.| ++=|.+|+++||+||++-....
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEeccCc
Confidence 467776655443 7779999999999999977543
No 400
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=32.01 E-value=1.7e+02 Score=30.73 Aligned_cols=92 Identities=12% Similarity=-0.001 Sum_probs=53.1
Q ss_pred eccCcccCCH-HHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccc-hHhhh------
Q 046605 292 CFGSVANFTS-AQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAP-QVLIL------ 363 (487)
Q Consensus 292 s~Gs~~~~~~-~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp-~~~ll------ 363 (487)
|-||...... ..-..+++.|++.|.+.|.-+++.... .+. +.+. +.++++.+.--. +...+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~----~l~----dal~---~~~~i~~i~~~hE~~A~~~Adgya 71 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAIL----PLY----DALS---QSTQIRHILARHEQGAGFIAQGMA 71 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccH----HHH----HHHh---ccCCceEEEeccHHHHHHHHHHHH
Confidence 3455554332 346778888999999998888876531 111 1221 123454433211 11111
Q ss_pred -cccCccccccccCch------hHHHHhhcCCcEeccC
Q 046605 364 -DHEAVGGFVTHCGWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 364 -~~~~~~~~I~HGG~g------s~~eal~~GvP~l~~P 394 (487)
......++++|.|-| .+++|...++|+|++.
T Consensus 72 r~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 72 RTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHcCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 112333478787744 7899999999999985
No 401
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.94 E-value=70 Score=30.48 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=37.4
Q ss_pred ccCccccccccCchhHHHHhhc----CCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHH
Q 046605 365 HEAVGGFVTHCGWNSILEGVTA----GVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNE 440 (487)
Q Consensus 365 ~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ 440 (487)
.+++ +|+=||=||++.|... ++|++.+-. -++ |.. . .++.+++.+++.+
T Consensus 68 ~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~--------G~l------GFL---t--------~~~~~~~~~~l~~ 120 (305)
T PRK02649 68 SMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT--------GHL------GFL---T--------EAYLNQLDEAIDQ 120 (305)
T ss_pred CcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------CCC------ccc---c--------cCCHHHHHHHHHH
Confidence 4555 9999999999999774 778887742 111 211 1 4567888888888
Q ss_pred HhcCc
Q 046605 441 IMMGD 445 (487)
Q Consensus 441 ll~~~ 445 (487)
+++|+
T Consensus 121 l~~g~ 125 (305)
T PRK02649 121 VLAGQ 125 (305)
T ss_pred HHcCC
Confidence 88643
No 402
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=31.93 E-value=88 Score=26.99 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCCEEEeCCCCc---chHHHHHHhCCCeEEEec
Q 046605 110 PLEQLLQEHKPDCLVADMFFP---WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~---~~~~~A~~~giP~v~~~~ 148 (487)
.+.++++..+||+|++-.... .+..+|.++|.|++.-.+
T Consensus 82 ~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 82 ALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred HHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 455566667899999877554 578899999999886543
No 403
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=31.35 E-value=80 Score=29.49 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
|.+|+|+-=|+-|-..-...||.+|+++|++|.++=-
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~ 37 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGC 37 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEee
Confidence 3467777667889999999999999999999988833
No 404
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=31.33 E-value=91 Score=25.44 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
++.||++...+..+|-.----++..|...|++|.-....
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 367999999999999999988999999999999887754
No 405
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=31.33 E-value=5.9e+02 Score=27.98 Aligned_cols=109 Identities=14% Similarity=0.065 Sum_probs=64.0
Q ss_pred hhcccCccccccc-----cCchhHHHHhhcCCcEeccCc-cccchhhHHHHHHHhhceEeecccccccccCCccCHHHHH
Q 046605 362 ILDHEAVGGFVTH-----CGWNSILEGVTAGVPLVTWPV-YAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIV 435 (487)
Q Consensus 362 ll~~~~~~~~I~H-----GG~gs~~eal~~GvP~l~~P~-~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~ 435 (487)
|.+-+++-+.... ||.+....++ +|++.+.+-- +++..++. ..|-++.-.....+.+.++..+++.|.
T Consensus 563 LvaG~DvwLn~prrp~EAsGTSgMKA~~-NG~LnlSvlDGww~E~~~g-----~nGwaig~~~~~~~~~~~d~~da~~Ly 636 (778)
T cd04299 563 LVQGVDVWLNTPRRPLEASGTSGMKAAL-NGGLNLSVLDGWWDEGYDG-----ENGWAIGDGDEYEDDEYQDAEEAEALY 636 (778)
T ss_pred HHhhhhhcccCCCCCCCCCccchHHHHH-cCCeeeecccCccccccCC-----CCceEeCCCccccChhhcchhhHHHHH
Confidence 6666888777778 8887777666 9999998875 34433332 123222221110111234578889898
Q ss_pred HHHHHHhcCchHHHHHHH-----HHHHHHHHHHHHhc---CCCcHHHHHHHHH
Q 046605 436 KAVNEIMMGDRAEEMRSR-----AKAFGEMAKRAVEN---GGSSSSNLNSLIE 480 (487)
Q Consensus 436 ~~i~~ll~~~~~~~~~~~-----a~~l~~~~~~a~~~---~g~~~~~~~~~~~ 480 (487)
+.|++-+ -|.|.++ -.+|-++++++++. .=++..-+.+=++
T Consensus 637 ~~Le~~i----~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~ 685 (778)
T cd04299 637 DLLENEV----IPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVE 685 (778)
T ss_pred HHHHHHH----HHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 9886654 2566554 45677777777665 3444444444333
No 406
>PRK06270 homoserine dehydrogenase; Provisional
Probab=31.04 E-value=4.2e+02 Score=25.68 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=35.6
Q ss_pred chHhhhcccCcccccc------ccC---chhHHHHhhcCCcEec---cCccccchhhHHHHHHHhhceEeec
Q 046605 358 PQVLILDHEAVGGFVT------HCG---WNSILEGVTAGVPLVT---WPVYAEQFYNEKIVNEVLKIGIGVG 417 (487)
Q Consensus 358 p~~~ll~~~~~~~~I~------HGG---~gs~~eal~~GvP~l~---~P~~~DQ~~~a~rv~~~~G~G~~l~ 417 (487)
...++|..+++.++|- |+| ..-+.+||.+|+++|+ -|....-....... ++.|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEEe
Confidence 4456776554444544 443 4456899999999999 47643333334334 5667766543
No 407
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=30.96 E-value=1.8e+02 Score=29.12 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
|||+++-.+..+ ..|++++.+-|+.+++++.+.
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~ 33 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPG 33 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECC
Confidence 578888777664 467888888888777776653
No 408
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=30.94 E-value=1.1e+02 Score=24.55 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=28.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
++++..|..++-.-+..+++.|+++|+.|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 35666777777778999999999999998888553
No 409
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=30.92 E-value=58 Score=22.87 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 046605 25 VDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 25 l~La~~L~~rGh~Vt~~~~~ 44 (487)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56789999999999999764
No 410
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=30.83 E-value=81 Score=24.94 Aligned_cols=37 Identities=11% Similarity=-0.057 Sum_probs=32.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
++..+.++..|.....-++..|.++|++|.+......
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCC
Confidence 5777888899999999999999999999999976433
No 411
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=30.80 E-value=1.7e+02 Score=30.77 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=21.9
Q ss_pred ccccccccCch------hHHHHhhcCCcEeccC
Q 046605 368 VGGFVTHCGWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 368 ~~~~I~HGG~g------s~~eal~~GvP~l~~P 394 (487)
..++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34488888855 6789999999999985
No 412
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.72 E-value=1.6e+02 Score=22.01 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=30.8
Q ss_pred cCHHHHHHH---HHHHhcCchHHHHHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHhh
Q 046605 429 VKREAIVKA---VNEIMMGDRAEEMRSRAKAFGEMAKRAV-ENGGSSSSNLNSLIEDLSL 484 (487)
Q Consensus 429 ~~~~~l~~~---i~~ll~~~~~~~~~~~a~~l~~~~~~a~-~~~g~~~~~~~~~~~~l~~ 484 (487)
.+.+.+.+. +.++.+ |...-+|.++.++...+++ ++|-+..-..+..|.-|+.
T Consensus 10 d~~e~i~q~~~lL~~Ii~---DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLee 66 (93)
T COG1698 10 DSEEKINQVMQLLDEIIQ---DTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEE 66 (93)
T ss_pred hhHHHHHHHHHHHHHHHc---cccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 344444444 445555 5566666666666666555 5577766666666665543
No 413
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=30.33 E-value=1.1e+02 Score=30.59 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEE
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTR-GVKASVI 41 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~ 41 (487)
|||+++-.++..| +|++.|.+. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 5899998887666 599999886 5444444
No 414
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=30.17 E-value=66 Score=30.26 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+||.|+-.+..| .++|+.|.++||+|+++.-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 367777777666 58899999999999999765
No 415
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=30.08 E-value=1.1e+02 Score=22.24 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=28.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 046605 10 IFFFPFLAHGHMIPTVDMAKLFTTRGVKASVIT 42 (487)
Q Consensus 10 Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 42 (487)
+++...++.|=..-...|+..|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788889999999999999999998876
No 416
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=30.07 E-value=3.3e+02 Score=27.46 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
|+|||++-.+.. .+.+++++.+.|++|+.+.+.
T Consensus 2 ~k~iLi~g~g~~-----a~~i~~aa~~~G~~vv~~~~~ 34 (451)
T PRK08591 2 FDKILIANRGEI-----ALRIIRACKELGIKTVAVHST 34 (451)
T ss_pred cceEEEECCCHH-----HHHHHHHHHHcCCeEEEEcCh
Confidence 578888844433 478888999999999888665
No 417
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=30.05 E-value=1.8e+02 Score=26.19 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=30.1
Q ss_pred hhHHHHHHHhhCCCCEEEeCCCCc--------------c--------hHHHHHHhCCCeEEEechh
Q 046605 107 LQKPLEQLLQEHKPDCLVADMFFP--------------W--------ATDAAAKFGIPRLVFHGTS 150 (487)
Q Consensus 107 ~~~~l~~~l~~~~pDlVI~D~~~~--------------~--------~~~~A~~~giP~v~~~~~~ 150 (487)
+...+++.+++++||+||++.-+- . ....++.+|||.+.+.+.+
T Consensus 236 l~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGG 301 (324)
T KOG1344|consen 236 LKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGG 301 (324)
T ss_pred HHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCc
Confidence 355677777889999999754221 1 1235778899999886653
No 418
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=30.03 E-value=4.1e+02 Score=23.82 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=60.7
Q ss_pred hhhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcE
Q 046605 273 EQECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLI 352 (487)
Q Consensus 273 ~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~ 352 (487)
.+.+.+|+... .+.+.||=+-|..........+..++|+++|+.+.=.-....+ .+.++......+++
T Consensus 21 ~~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~-----------~~~Ie~~l~~~d~I 88 (224)
T COG3340 21 LPFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPP-----------LAAIENKLMKADII 88 (224)
T ss_pred hHHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCC-----------HHHHHHhhhhccEE
Confidence 35566677664 4569999988888767778899999999999887654443332 12222111122222
Q ss_pred eecccchHhhhcccCccccccccCchhHHHHhhcCCcEeccCc
Q 046605 353 IRGWAPQVLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPV 395 (487)
Q Consensus 353 ~~~~vp~~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~ 395 (487)
.+.=-.-..||.. .=.+|=.--+.|.+.+|+|-+++-.
T Consensus 89 yVgGGNTF~LL~~-----lke~gld~iIr~~vk~G~~YiG~SA 126 (224)
T COG3340 89 YVGGGNTFNLLQE-----LKETGLDDIIRERVKAGTPYIGWSA 126 (224)
T ss_pred EECCchHHHHHHH-----HHHhCcHHHHHHHHHcCCceEEecc
Confidence 2222222222211 1112222345688999999987763
No 419
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=29.92 E-value=5.3e+02 Score=25.11 Aligned_cols=290 Identities=16% Similarity=0.133 Sum_probs=137.8
Q ss_pred HHHhhhHHHHHHHhhCCCCEEEeCCCCcch-HHHHHHhCCCeEEEechhHHHHHHHHHhhhhcCCCCCCCCCCccccCCC
Q 046605 103 ATTKLQKPLEQLLQEHKPDCLVADMFFPWA-TDAAAKFGIPRLVFHGTSFFSLCAIKCLALYEPHKKVSSDSEPFVMPNL 181 (487)
Q Consensus 103 ~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~-~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 181 (487)
++-.|.-.++.++ +..||+.|-..-.+.. ..+++..++|++.+.-.|....-+...+.+
T Consensus 135 aigsmIl~~Eai~-r~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~q------------------- 194 (465)
T KOG1387|consen 135 AIGSMILAFEAII-RFPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQ------------------- 194 (465)
T ss_pred HHHHHHHHHHHHH-hCCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHh-------------------
Confidence 3333444444443 3689988866544444 445667899999887665554433222211
Q ss_pred CCCcccccCCCCCCcCCCCCCchHHHHHHHhhhcc-cCccEEEEcchhhhcHHHHHHHHHHhCCc-eEEeccccCCCcCc
Q 046605 182 PGEIKLTRNQLPDPAKQDMGDNDFSRFMKASDDSD-LRSYGVVVNSFYELEHAYADHYRKALGRR-AWHIGPVSLCNRNF 259 (487)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~l~~~~~~~~~~~~~~~-~~~vGp~~~~~~~~ 259 (487)
++...++ .+.+..+.+.+..+.... ..++.++.|+...-.. +..-|..+ ..-|=|-+
T Consensus 195 --------rq~s~~l--~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nH-----I~qiW~~~~~~iVyPPC------ 253 (465)
T KOG1387|consen 195 --------RQKSGIL--VWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNH-----IKQIWQSNTCSIVYPPC------ 253 (465)
T ss_pred --------hhhcchh--hhHHHHHHHHHHHHHHhccccceEEEecchhhHHH-----HHHHhhccceeEEcCCC------
Confidence 1111110 111112445554444443 3445566777543221 23334322 22232322
Q ss_pred hhhhhhCCCCCCChhhHhhhhcCCCCCcEEEEeccCcccCCH-HHHHHHHHHHHhc-----CCcE-EEEecCCCCCCCcc
Q 046605 260 EDKALRGKQASVDEQECLKWLNSKQPNSVVYICFGSVANFTS-AQLMEIAMGLEAS-----GQNF-IWVVRKNKNNGGEE 332 (487)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~a~~~~-----~~~~-i~~~~~~~~~~~~~ 332 (487)
..+++++-....+.+-+..+++|-.--... +.+.-.+--+.+. ..++ +...|+....+|++
T Consensus 254 ------------~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~e 321 (465)
T KOG1387|consen 254 ------------STEDLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEE 321 (465)
T ss_pred ------------CHHHHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHH
Confidence 124555555443455577777764432111 1122222122222 2222 23344444444444
Q ss_pred cccccCchhHHHHhc-CCCcEeecccchHhhh---cccCcccccc-----ccCchhHHHHhhcCCcEeccCccccchhhH
Q 046605 333 EKEDWLPEGFEKRME-GKGLIIRGWAPQVLIL---DHEAVGGFVT-----HCGWNSILEGVTAGVPLVTWPVYAEQFYNE 403 (487)
Q Consensus 333 ~~~~~lp~~~~~~~~-~~nv~~~~~vp~~~ll---~~~~~~~~I~-----HGG~gs~~eal~~GvP~l~~P~~~DQ~~~a 403 (487)
.++. |- ++.++.+ +.++.....+|..++. ..+.+ -|| |=|. ++-|.+++|.=+|+---.+--.+..
T Consensus 322 rvk~-Lk-d~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gvh~MwNEHFGI-sVVEyMAAGlIpi~h~SgGP~lDIV 396 (465)
T KOG1387|consen 322 RVKS-LK-DLAEELKIPKHVQFEKNVPYEKLVELLGKATI--GVHTMWNEHFGI-SVVEYMAAGLIPIVHNSGGPLLDIV 396 (465)
T ss_pred HHHH-HH-HHHHhcCCccceEEEecCCHHHHHHHhcccee--ehhhhhhhhcch-hHHHHHhcCceEEEeCCCCCceeee
Confidence 4443 32 3333333 5778888899987644 33333 221 2233 6778888886444332222111111
Q ss_pred HHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHHH
Q 046605 404 KIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMMGDR--AEEMRSRAKAFGEMAKR 463 (487)
Q Consensus 404 ~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~--~~~~~~~a~~l~~~~~~ 463 (487)
. .+ .|-.-..- ..|.++-.+++.+++.-+. ...+|++|++-.+++.+
T Consensus 397 ~---~~--~G~~tGFl--------a~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 397 T---PW--DGETTGFL--------APTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred e---cc--CCccceee--------cCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 1 11 11111111 3577888888888875221 24578888877777764
No 420
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=29.88 E-value=88 Score=26.92 Aligned_cols=72 Identities=19% Similarity=0.350 Sum_probs=0.0
Q ss_pred HhhhcccCccccccccCchhHHHHhhcCCcEeccCc-----------------------cccchhhHHHHHHHhhceEee
Q 046605 360 VLILDHEAVGGFVTHCGWNSILEGVTAGVPLVTWPV-----------------------YAEQFYNEKIVNEVLKIGIGV 416 (487)
Q Consensus 360 ~~ll~~~~~~~~I~HGG~gs~~eal~~GvP~l~~P~-----------------------~~DQ~~~a~rv~~~~G~G~~l 416 (487)
..++.+..+..+|+.||...+..... ++|+|-+|. +.........+.+-+|+-+..
T Consensus 27 ~~~~~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~ 105 (176)
T PF06506_consen 27 RQLLESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKI 105 (176)
T ss_dssp HHHHTTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEE
T ss_pred HHhhHhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEE
Q ss_pred cccccccccCCccCHHHHHHHHHHH
Q 046605 417 GIQKWCRIVGDFVKREAIVKAVNEI 441 (487)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~i~~l 441 (487)
.. --+.+++...|.++
T Consensus 106 ~~---------~~~~~e~~~~i~~~ 121 (176)
T PF06506_consen 106 YP---------YDSEEEIEAAIKQA 121 (176)
T ss_dssp EE---------ESSHHHHHHHHHHH
T ss_pred EE---------ECCHHHHHHHHHHH
No 421
>PLN00016 RNA-binding protein; Provisional
Probab=29.83 E-value=65 Score=31.68 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=26.3
Q ss_pred CceEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFP--FLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
.+++|+|+. .|+.|.+- ..|++.|.++||+|+.++-.
T Consensus 51 ~~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 346788772 23445443 56789999999999998865
No 422
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=29.80 E-value=1.1e+02 Score=26.54 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=32.0
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
+...++++-.++.|-.+=..++++++.++|+.|.|++.+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L 86 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL 86 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce
Confidence 44678888888999999999999999999999999987543
No 423
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=29.78 E-value=2.3e+02 Score=26.62 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCcc
Q 046605 25 VDMAKLFTTRGVKASVITTPGNAP 48 (487)
Q Consensus 25 l~La~~L~~rGh~Vt~~~~~~~~~ 48 (487)
.++|..|+++|++|.++..++...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 468889999999999999887654
No 424
>PRK06756 flavodoxin; Provisional
Probab=29.78 E-value=96 Score=25.64 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCCChHHH-HHHHHHHHhCCCeEEEEeC
Q 046605 7 QLHIFFFPFLAHGHMIPT-VDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~-l~La~~L~~rGh~Vt~~~~ 43 (487)
||+|+++=....||.--+ ..|++.|.++|++|.+...
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 467888877789999764 5678899889999887644
No 425
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=29.47 E-value=63 Score=32.67 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=27.1
Q ss_pred HHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 110 PLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
++.+.+++.+||+||..+ .+..+|+++|||++.++
T Consensus 378 e~~~~i~~~~pdllig~s---~~~~~A~~lgip~~~~~ 412 (443)
T TIGR01862 378 EFEEILEKLKPDIIFSGI---KEKFVAQKLGVPYRQMH 412 (443)
T ss_pred HHHHHHHhcCCCEEEEcC---cchhhhhhcCCCeEecC
Confidence 445556667999999886 45778999999999763
No 426
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=29.43 E-value=1.1e+02 Score=28.97 Aligned_cols=38 Identities=8% Similarity=-0.068 Sum_probs=28.7
Q ss_pred CceEEEEEcCCCCC-Ch---HHHHHHHHHHHhCCCeEEEEeC
Q 046605 6 CQLHIFFFPFLAHG-HM---IPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 6 ~~~~Il~~~~~~~G-H~---~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
+++||+++..|..+ |- ....+++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 47799999876443 33 4567899999999999988753
No 427
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.29 E-value=1.7e+02 Score=27.09 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=34.1
Q ss_pred hHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEEechh
Q 046605 108 QKPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVFHGTS 150 (487)
Q Consensus 108 ~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~~~ 150 (487)
...+.+.+++.+..+|+++..+. .+-.+|+..|+|.+.+.+..
T Consensus 206 l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 206 LKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 34566777789999999998766 46678999999998887654
No 428
>PRK05246 glutathione synthetase; Provisional
Probab=29.22 E-value=83 Score=30.12 Aligned_cols=41 Identities=12% Similarity=-0.072 Sum_probs=31.8
Q ss_pred ceEEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 046605 7 QLHIFFFPFL---AHGHMIPTVDMAKLFTTRGVKASVITTPGNA 47 (487)
Q Consensus 7 ~~~Il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 47 (487)
.|||+|+.-| -.-......+|+++-.++||+|.++++....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~ 44 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLS 44 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcE
Confidence 3678888754 2344467788999999999999999997554
No 429
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.02 E-value=1.9e+02 Score=30.03 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=28.8
Q ss_pred HHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEech
Q 046605 111 LEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 111 l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~~ 149 (487)
..+-+++.+.++||.|. .+..+|+.+|++.|.+.+.
T Consensus 137 ~~~~l~~~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 137 CVNDLRARGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHCCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 33444558999999996 4678999999999999774
No 430
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.01 E-value=1.1e+02 Score=29.28 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCchhH
Q 046605 301 SAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSI 380 (487)
Q Consensus 301 ~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~gs~ 380 (487)
.+.+..+.+.|++.++.+.+...... ..-..... ...-..+++ +|+-||-||+
T Consensus 18 ~~~~~~i~~~L~~~g~~v~v~~~~~~------------------------~~~~~~~~-~~~~~~~d~--vi~~GGDGT~ 70 (305)
T PRK02645 18 KEAAERCAKQLEARGCKVLMGPSGPK------------------------DNPYPVFL-ASASELIDL--AIVLGGDGTV 70 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCchh------------------------hccccchh-hccccCcCE--EEEECCcHHH
Q ss_pred HHHhhc----CCcEecc
Q 046605 381 LEGVTA----GVPLVTW 393 (487)
Q Consensus 381 ~eal~~----GvP~l~~ 393 (487)
++++.. ++|++++
T Consensus 71 l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 71 LAAARHLAPHDIPILSV 87 (305)
T ss_pred HHHHHHhccCCCCEEEE
No 431
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=28.95 E-value=4.7e+02 Score=24.23 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
++||+|+..++...-. .++.+|.++|.+|.++....
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~ 38 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIND 38 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecc
Confidence 5789999988775443 45788888999999887643
No 432
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.85 E-value=68 Score=27.07 Aligned_cols=35 Identities=9% Similarity=0.001 Sum_probs=26.3
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
.+..+|+++-.|.-| ...++.|.+.||+|+++.++
T Consensus 11 l~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 345677777665433 77899999999999999643
No 433
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.79 E-value=97 Score=29.28 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=28.4
Q ss_pred ceEEEEEcCC-CCCChH---HHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFL-AHGHMI---PTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~-~~GH~~---p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
++||++++.+ +.=|-. ....+.++|.++||+|.++...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 4588888744 333444 6689999999999999998654
No 434
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=28.78 E-value=1.9e+02 Score=26.58 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=29.9
Q ss_pred HHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEEec
Q 046605 109 KPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~ 148 (487)
..+.+.+++.+..+|+++.... .+..+|+..|+|.+.+.+
T Consensus 189 ~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~ 230 (256)
T PF01297_consen 189 AELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDP 230 (256)
T ss_dssp HHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESST
T ss_pred HHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCC
Confidence 3677888889999999998766 467789999999987644
No 435
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=28.70 E-value=4e+02 Score=23.31 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=23.4
Q ss_pred CCCCEEE-eCCCCc-chHHHHHHhCCCeEEEech
Q 046605 118 HKPDCLV-ADMFFP-WATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 118 ~~pDlVI-~D~~~~-~~~~~A~~~giP~v~~~~~ 149 (487)
..||+|| .|+..- .+..=|..+|||.|.+..+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 6899866 555433 5666789999999998644
No 436
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=28.56 E-value=1.5e+02 Score=25.11 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=32.4
Q ss_pred HhhhHHHHHHHhhCCCCEEEeCCCCcc---------------hHHHHHHhCCCeEEEech
Q 046605 105 TKLQKPLEQLLQEHKPDCLVADMFFPW---------------ATDAAAKFGIPRLVFHGT 149 (487)
Q Consensus 105 ~~~~~~l~~~l~~~~pDlVI~D~~~~~---------------~~~~A~~~giP~v~~~~~ 149 (487)
..+...+.+++++++||.+..+..|+. ...++...|+|+.-+++.
T Consensus 43 ~~I~~~l~~~i~~y~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~ 102 (156)
T TIGR00228 43 KLIYAGVTEIITQFQPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAAR 102 (156)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 345668899999999999998876551 234566667888877553
No 437
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=28.44 E-value=81 Score=32.16 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=37.7
Q ss_pred ccCccccccccCchhHHHHhhc----CCcEeccCccccchhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHH
Q 046605 365 HEAVGGFVTHCGWNSILEGVTA----GVPLVTWPVYAEQFYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNE 440 (487)
Q Consensus 365 ~~~~~~~I~HGG~gs~~eal~~----GvP~l~~P~~~DQ~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ 440 (487)
.+++ +|+=||-||++.|... ++|++.+- .-+ +|. + . .++.+++.++|.+
T Consensus 262 ~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN--------~G~------LGF-L--t--------~i~~~e~~~~Le~ 314 (508)
T PLN02935 262 KVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS--------MGS------LGF-M--T--------PFHSEQYRDCLDA 314 (508)
T ss_pred CCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe--------CCC------cce-e--c--------ccCHHHHHHHHHH
Confidence 4555 9999999999999774 45666542 211 232 2 2 5678899999999
Q ss_pred HhcCc
Q 046605 441 IMMGD 445 (487)
Q Consensus 441 ll~~~ 445 (487)
+++|+
T Consensus 315 il~G~ 319 (508)
T PLN02935 315 ILKGP 319 (508)
T ss_pred HHcCC
Confidence 98744
No 438
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.38 E-value=97 Score=28.37 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=22.7
Q ss_pred HHhhCCCCEEEeCCCCcc--hHH-HHHHhCCCeEEEec
Q 046605 114 LLQEHKPDCLVADMFFPW--ATD-AAAKFGIPRLVFHG 148 (487)
Q Consensus 114 ~l~~~~pDlVI~D~~~~~--~~~-~A~~~giP~v~~~~ 148 (487)
.+.+.+||+||....... ... +.+.+|+|++.+..
T Consensus 69 ~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 69 KIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 344469999998755432 122 34458999988864
No 439
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=28.37 E-value=1.1e+02 Score=27.44 Aligned_cols=38 Identities=11% Similarity=-0.062 Sum_probs=25.7
Q ss_pred eEEEEEcCC----CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 8 LHIFFFPFL----AHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 8 ~~Il~~~~~----~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
+||+|+..+ .-....=+..-...|.++|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 467776531 11233446666788999999999999854
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=28.08 E-value=1.5e+02 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPH 49 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 49 (487)
.--+++.-.++.|-..-.+.++..+.++|..+.+++.+...+.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~ 66 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTE 66 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHH
Confidence 3456777788999999999999999999999999997655433
No 441
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=28.02 E-value=1.5e+02 Score=25.99 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=28.2
Q ss_pred hHHHHHHHhhCCCCEEEeCC-C-CcchHHHHHHhCCCeEEEe
Q 046605 108 QKPLEQLLQEHKPDCLVADM-F-FPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 108 ~~~l~~~l~~~~pDlVI~D~-~-~~~~~~~A~~~giP~v~~~ 147 (487)
...+.+.++..++|+|++=. - ++.+..+|..+|+|++.+-
T Consensus 39 ~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 39 GEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred HHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 34455555667899998433 2 3367778999999999873
No 442
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=27.96 E-value=3.3e+02 Score=25.48 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=32.8
Q ss_pred hHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHhCCCeEEEec
Q 046605 108 QKPLEQLLQEHKPDCLVADMFFP--WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 108 ~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~giP~v~~~~ 148 (487)
...+.+.+++.+..+|++++.+. .+-.+|+..|++.+.+.+
T Consensus 209 l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 209 LAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 34677778889999999999776 466799999999887644
No 443
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=27.77 E-value=62 Score=32.91 Aligned_cols=35 Identities=29% Similarity=0.618 Sum_probs=27.7
Q ss_pred HHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEe
Q 046605 110 PLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~ 147 (487)
++.+.+++.+||+||..+. ...+|+++|||++.++
T Consensus 386 e~~~~i~~~~pDllig~~~---~~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 386 ELEEIIEKYKPDIILTGIR---EGELAKKLGVPYINIH 420 (457)
T ss_pred HHHHHHHhcCCCEEEecCC---cchhhhhcCCCEEEcc
Confidence 4566677789999998863 4668999999999863
No 444
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=27.77 E-value=6.1e+02 Score=25.15 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=35.6
Q ss_pred cccccCchhHHHHhhcCCcEec--cCccccc------hhhHHHHHHHhhceEeecccccccccCCccCHHHHHHHHHHHh
Q 046605 371 FVTHCGWNSILEGVTAGVPLVT--WPVYAEQ------FYNEKIVNEVLKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIM 442 (487)
Q Consensus 371 ~I~HGG~gs~~eal~~GvP~l~--~P~~~DQ------~~~a~rv~~~~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll 442 (487)
+-|+ |+.++..|+.+|.|+-. ++.++|- -.++.++++.+-..+ - .++.+++..+|.+++
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~v----v--------vV~~~ei~aaI~~l~ 314 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRV----V--------VVEDDEIAAAILRLF 314 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceE----E--------EeccHHHHHHHHHHH
Confidence 4444 67799999999998732 1223332 123333322111111 1 468899999999999
Q ss_pred c
Q 046605 443 M 443 (487)
Q Consensus 443 ~ 443 (487)
+
T Consensus 315 e 315 (457)
T KOG1250|consen 315 E 315 (457)
T ss_pred H
Confidence 7
No 445
>PRK03094 hypothetical protein; Provisional
Probab=27.75 E-value=54 Score=24.05 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 046605 24 TVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+-.|.++|.++||+|.=+.++
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999877553
No 446
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=27.57 E-value=7.1e+02 Score=25.83 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=32.9
Q ss_pred EEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEeCCCCccc
Q 046605 9 HIFFFPFL---AHGHMIPTVDMAKLFTTRGVKASVITTPGNAPH 49 (487)
Q Consensus 9 ~Il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 49 (487)
|.+|++.+ +.|-=.-...|+..|..||++|+.+=-+++.+.
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~ 45 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINI 45 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccC
Confidence 67788765 556667888999999999999999987766544
No 447
>PLN02285 methionyl-tRNA formyltransferase
Probab=27.51 E-value=5.1e+02 Score=25.05 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=22.0
Q ss_pred HHHHHHhhCCCCEEEeCCCC-cchHHHHHHhCCCeEEEec
Q 046605 110 PLEQLLQEHKPDCLVADMFF-PWATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~-~~~~~~A~~~giP~v~~~~ 148 (487)
++.+.+++.+||++|+=.+. .....+-.....-++-+++
T Consensus 84 ~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHp 123 (334)
T PLN02285 84 DFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHP 123 (334)
T ss_pred HHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEec
Confidence 34455677899998876432 2333333444444565554
No 448
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=27.48 E-value=3.2e+02 Score=28.52 Aligned_cols=80 Identities=9% Similarity=0.052 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecc--------cchHhhhcccCcccccccc
Q 046605 304 LMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGW--------APQVLILDHEAVGGFVTHC 375 (487)
Q Consensus 304 ~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~--------vp~~~ll~~~~~~~~I~HG 375 (487)
-..+++.|++.|.+.|+-+++.... .+. +.+. +.++++.+.- +-.-.-....+..++++|.
T Consensus 11 ~~~l~~~L~~~GV~~vFg~pG~~~~----~l~----~al~---~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~ 79 (557)
T PRK08199 11 GQILVDALRANGVERVFCVPGESYL----AVL----DALH---DETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTR 79 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchh----HHH----HHhh---ccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4556777777777777777665421 100 1111 1122333221 1111111123344488888
Q ss_pred Cch------hHHHHhhcCCcEeccC
Q 046605 376 GWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 376 G~g------s~~eal~~GvP~l~~P 394 (487)
|-| .+++|...++|+|++-
T Consensus 80 GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 80 GPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CccHHHHHHHHHHHhhcCCCEEEEe
Confidence 854 7889999999999884
No 449
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=27.39 E-value=1.5e+02 Score=27.68 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCcc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAP 48 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 48 (487)
.-|+|+..++-|-..-...||..|.++|++|.++..+.++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 34556667799999999999999999999999999887643
No 450
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=27.39 E-value=4.3e+02 Score=25.45 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=23.2
Q ss_pred CCCCEEE-eCCCCc-chHHHHHHhCCCeEEEec
Q 046605 118 HKPDCLV-ADMFFP-WATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 118 ~~pDlVI-~D~~~~-~~~~~A~~~giP~v~~~~ 148 (487)
..||+|| .|+..- .+..=|..+|||+|.+.-
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivD 183 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVD 183 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEee
Confidence 3799855 566544 667779999999999854
No 451
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.13 E-value=78 Score=30.44 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+|||.|+-.|..| ..+|..|.++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 6789999777766 56889999999999999874
No 452
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.09 E-value=56 Score=33.20 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhh
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~ 53 (487)
+..||++...++.+ .+=...|.+.|.++||+|.++.++.-.+.+...
T Consensus 69 ~~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 69 ASKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 35778887766544 447889999999999999999998776666543
No 453
>PLN02293 adenine phosphoribosyltransferase
Probab=27.04 E-value=1.9e+02 Score=25.26 Aligned_cols=40 Identities=8% Similarity=0.007 Sum_probs=28.2
Q ss_pred hhHHHHHHHhhCCCCEEEeCC-C-CcchHHHHHHhCCCeEEE
Q 046605 107 LQKPLEQLLQEHKPDCLVADM-F-FPWATDAAAKFGIPRLVF 146 (487)
Q Consensus 107 ~~~~l~~~l~~~~pDlVI~D~-~-~~~~~~~A~~~giP~v~~ 146 (487)
+...+.+.++..++|+|++=. - +..+..+|..+|+|++.+
T Consensus 50 ~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 50 TIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 344555555666899988543 2 236788999999998866
No 454
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=27.02 E-value=1e+02 Score=28.75 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVIT 42 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 42 (487)
..|.|+.=|+-|-..-.++||.+|+++|++|.++=
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 34666666688899999999999999999999983
No 455
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=26.98 E-value=68 Score=30.66 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=26.1
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
||||+|+-.|..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 4689988776665 46788899999999988764
No 456
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=26.95 E-value=1e+02 Score=29.58 Aligned_cols=41 Identities=29% Similarity=0.346 Sum_probs=27.1
Q ss_pred hHHHHHHHhhCCCCEEEeCC--CCc-chHHH----------HHHhCCCeEEEec
Q 046605 108 QKPLEQLLQEHKPDCLVADM--FFP-WATDA----------AAKFGIPRLVFHG 148 (487)
Q Consensus 108 ~~~l~~~l~~~~pDlVI~D~--~~~-~~~~~----------A~~~giP~v~~~~ 148 (487)
..-+.++|++++||+||... .+. ...++ |...||||+.+.-
T Consensus 89 t~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lG 142 (379)
T KOG1432|consen 89 TNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLG 142 (379)
T ss_pred HHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEec
Confidence 34578899999999998543 222 22222 4556999999853
No 457
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=26.90 E-value=95 Score=31.30 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCc
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNA 47 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 47 (487)
.+||+++-.+-.| ++.++.|.++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 8999999999888 89999999999999999765554
No 458
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.84 E-value=5.6e+02 Score=24.41 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCCC-----hHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCC
Q 046605 8 LHIFFFPFLAHGH-----MIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGW 82 (487)
Q Consensus 8 ~~Il~~~~~~~GH-----~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~ 82 (487)
.-|+|.|..+.|. .--+..|++.|.++|.+|.++.++.-++..+.... ...-..+. +.
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~-------~~~~~~~~-------l~--- 237 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA-------LLPGELRN-------LA--- 237 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH-------hCCccccc-------CC---
Confidence 3455555443331 12578999999888999888887654433332210 00000000 00
Q ss_pred cccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEec
Q 046605 83 ENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~ 148 (487)
.. .-..++..+++ +-|++|+.-. +...+|..+|+|.|.+..
T Consensus 238 g~---------------------~sL~el~ali~--~a~l~I~~DS--Gp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 238 GE---------------------TSLDEAVDLIA--LAKAVVTNDS--GLMHVAAALNRPLVALYG 278 (334)
T ss_pred CC---------------------CCHHHHHHHHH--hCCEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 00 01224445555 6799886532 567799999999998854
No 459
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=26.82 E-value=82 Score=30.20 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+++|.++-.|++| .+||+.|++.||+|++...+
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 4689999888888 58999999999999999875
No 460
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.82 E-value=1.1e+02 Score=22.77 Aligned_cols=36 Identities=8% Similarity=0.099 Sum_probs=27.5
Q ss_pred eEEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 8 LHIFFFPFLAH--GHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 8 ~~Il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
-+|+++|.... .+..-...++..|.++|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 36788887653 4556688999999999999988543
No 461
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.77 E-value=1.1e+02 Score=26.96 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.6
Q ss_pred HHHHHHHhhCCCCEEEeCCCC------cchHHHHHHhCCCeEEEe
Q 046605 109 KPLEQLLQEHKPDCLVADMFF------PWATDAAAKFGIPRLVFH 147 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~~------~~~~~~A~~~giP~v~~~ 147 (487)
..+.++++..+||+|+.-..+ ..+..+|.++|.|++.=.
T Consensus 98 ~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv 142 (202)
T cd01714 98 KALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYV 142 (202)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceE
Confidence 356666777789999987655 367889999999987543
No 462
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=26.62 E-value=1e+02 Score=30.74 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=30.2
Q ss_pred eEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 8 LHIFFFP--FLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 8 ~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
++|+.+. =|+-|-..-.+.||..|+.+|++|.++=-++
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 4554444 4688999999999999999999999884443
No 463
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=26.58 E-value=2.1e+02 Score=24.82 Aligned_cols=49 Identities=12% Similarity=0.012 Sum_probs=34.1
Q ss_pred hhHhhhhcCCCCCcEEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCC
Q 046605 274 QECLKWLNSKQPNSVVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNK 326 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 326 (487)
..+..|...- ..|-||+|-. ..-.+.+..+.+.+..++++.||.+.+.+
T Consensus 28 ~~l~~~~~~L---k~lAiSc~~~-~~li~~L~~~~~~l~~l~~~~iWQ~DGRP 76 (183)
T PF12617_consen 28 QALAPSVPQL---KLLAISCPDG-EGLIDYLWQLYEILRPLPCPLIWQLDGRP 76 (183)
T ss_pred HHHHhhhhhc---cEEEEECCCC-HHHHHHHHHHHHHHhccCCCeeEeeCCcc
Confidence 3444454432 2789998863 22355677777888889999999999876
No 464
>PLN02924 thymidylate kinase
Probab=26.56 E-value=4.7e+02 Score=23.44 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=30.8
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+++=|+|--..+.|-..=.-.|++.|..+|+.|.....+
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep 53 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFP 53 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCC
Confidence 334466666779999999999999999999998655444
No 465
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=26.55 E-value=17 Score=32.72 Aligned_cols=46 Identities=9% Similarity=-0.021 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCCccchhhh
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTR-GVKASVITTPGNAPHLSRS 53 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~v~~~ 53 (487)
.-+++.-.++.|-..-.++++.+-+++ |..|.+++.+...+.+.+.
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHH
Confidence 446777788999999999988877788 9999999987665544443
No 466
>PLN02240 UDP-glucose 4-epimerase
Probab=26.46 E-value=1e+02 Score=29.71 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
++++|+|+ |+.|.+ -..|++.|.++||+|+.+..
T Consensus 4 ~~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 34566664 555655 34678999999999998863
No 467
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=26.36 E-value=58 Score=23.94 Aligned_cols=22 Identities=5% Similarity=0.155 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 046605 24 TVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 24 ~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
+-.+.++|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999888754
No 468
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.25 E-value=1.5e+02 Score=23.43 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=30.7
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 046605 12 FFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLS 51 (487)
Q Consensus 12 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 51 (487)
++.....|....++.+++.+.++|..|..+|........+
T Consensus 57 vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 57 VIIISYSGETRELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp EEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred eEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 3333367888999999999999999999999876544433
No 469
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.18 E-value=1.1e+02 Score=24.74 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=27.6
Q ss_pred cEEEEeccCcccCCHHHHHHHHHHHHh-c-CCcEEEEecC
Q 046605 287 SVVYICFGSVANFTSAQLMEIAMGLEA-S-GQNFIWVVRK 324 (487)
Q Consensus 287 ~~v~vs~Gs~~~~~~~~~~~~~~a~~~-~-~~~~i~~~~~ 324 (487)
.+|+++|||......+.+..+.+.+++ . ++.|-|+..+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999987555667778777753 3 4577777654
No 470
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.03 E-value=2.2e+02 Score=27.39 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCCC-C----hHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCC
Q 046605 7 QLHIFFFPFLAHG-H----MIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEG 81 (487)
Q Consensus 7 ~~~Il~~~~~~~G-H----~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~ 81 (487)
+..|+|.|..+.| + ..-+..|++.|.++|.+|.++.++.-.+..+.... .+.... .
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-------~~~~~~----------~-- 235 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-------GLPNAV----------I-- 235 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-------hcCCcc----------c--
Confidence 3567777763332 2 23588999999999998988888733333333311 000000 0
Q ss_pred CcccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEEec
Q 046605 82 WENLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVFHG 148 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~~~ 148 (487)
..... -..++..+++ ..|++|+.- .+...+|..+|.|.|.+..
T Consensus 236 ---l~~k~-----------------sL~e~~~li~--~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 236 ---LAGKT-----------------SLEELAALIA--GADLVIGND--SGPMHLAAALGTPTIALYG 278 (334)
T ss_pred ---cCCCC-----------------CHHHHHHHHh--cCCEEEccC--ChHHHHHHHcCCCEEEEEC
Confidence 00000 0123344444 778888653 2567799999999999864
No 471
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=26.02 E-value=3e+02 Score=28.81 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=22.0
Q ss_pred ccccccccCch------hHHHHhhcCCcEeccC
Q 046605 368 VGGFVTHCGWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 368 ~~~~I~HGG~g------s~~eal~~GvP~l~~P 394 (487)
..++++|.|-| .+++|...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44488888744 7899999999999995
No 472
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=25.93 E-value=1.4e+02 Score=27.09 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=22.4
Q ss_pred HHHHHHhhCCCCEEEeCCCCc--chHHHHHH----hCCCeEEEechh
Q 046605 110 PLEQLLQEHKPDCLVADMFFP--WATDAAAK----FGIPRLVFHGTS 150 (487)
Q Consensus 110 ~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~----~giP~v~~~~~~ 150 (487)
...+.++.++||++|+-+--. .+...|+. .|+|+|+++-.+
T Consensus 50 ~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 50 VVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGG
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCC
Confidence 345556778999977554322 34444443 499999997653
No 473
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=25.81 E-value=2.5e+02 Score=29.62 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.4
Q ss_pred CccccccccCch------hHHHHhhcCCcEeccC
Q 046605 367 AVGGFVTHCGWN------SILEGVTAGVPLVTWP 394 (487)
Q Consensus 367 ~~~~~I~HGG~g------s~~eal~~GvP~l~~P 394 (487)
+..++++|.|-| .+++|...++|+|++.
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 344488888844 7788999999999996
No 474
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=25.73 E-value=1.5e+02 Score=22.47 Aligned_cols=43 Identities=23% Similarity=0.431 Sum_probs=29.3
Q ss_pred hHHHHHHHhhCCCCEEEeCCCCc--chHHHHHHh-----CCCeEEEechh
Q 046605 108 QKPLEQLLQEHKPDCLVADMFFP--WATDAAAKF-----GIPRLVFHGTS 150 (487)
Q Consensus 108 ~~~l~~~l~~~~pDlVI~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 150 (487)
..+..+.++..+||+||.|.... .+..+++.+ ++|+|.++...
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~ 81 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDED 81 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESST
T ss_pred HHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCC
Confidence 34566777888999999997554 444444443 68888887543
No 475
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.71 E-value=1.7e+02 Score=22.19 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
++.||++++..+.|--.-.-.+-+.+.++|.++.+....
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 567999998776653333456666667788887766553
No 476
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=25.66 E-value=3.9e+02 Score=22.12 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCc
Q 046605 6 CQLHIFFFPFLAHGHMIPTVDMAKLFTTR--GVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWE 83 (487)
Q Consensus 6 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~ 83 (487)
.+++|++.. ..++=.-++.+++.|.+- ||++ ++|. ...+.+++. .|+....+- . + +.+.
T Consensus 3 ~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l-~AT~-gTa~~L~~~--------~Gi~v~~vi-~----~-~~gg- 63 (142)
T PRK05234 3 ARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL-YATG-TTGGLIQEA--------TGLDVTRLL-S----G-PLGG- 63 (142)
T ss_pred cCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE-EEeC-hHHHHHHhc--------cCCeeEEEE-c----C-CCCC-
Confidence 356676665 344556788999999999 9995 3444 333333322 134443331 0 0 0000
Q ss_pred ccccchhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCC--CCc--------chHHHHHHhCCCeEEE
Q 046605 84 NLDAITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADM--FFP--------WATDAAAKFGIPRLVF 146 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~--~~~--------~~~~~A~~~giP~v~~ 146 (487)
...+.+++++.+.|+||.-+ ... .....|-.+|||++.-
T Consensus 64 ------------------------~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 64 ------------------------DQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred ------------------------chhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 12567777888999999843 322 2344688889998864
No 477
>PRK12744 short chain dehydrogenase; Provisional
Probab=25.64 E-value=2.3e+02 Score=25.74 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeC
Q 046605 23 PTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~~~ 43 (487)
--..+|+.|.++|++|.+++.
T Consensus 20 IG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 20 LGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred HHHHHHHHHHHCCCcEEEEec
Confidence 346789999999999776653
No 478
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.59 E-value=1.4e+02 Score=26.62 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
+++++|+++ |+.|++ -..|++.|.++||+|++++...
T Consensus 4 ~~~~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 4 LMGRVALVT--GAARGL--GRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCCCEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeCCC
Confidence 345567763 445554 4678899999999987765543
No 479
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.58 E-value=99 Score=22.27 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 23 PTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 23 p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
.-+.+|..|.++|.+||++...+.
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 457889999999999999987544
No 480
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=25.54 E-value=4.7e+02 Score=23.09 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=32.4
Q ss_pred CceEEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFL-AHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
+|.++-|+..| ..|-..-++.-++....+|-.|.++++.
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~ 41 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA 41 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc
Confidence 45666555544 7799999999999999999999999985
No 481
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=25.51 E-value=80 Score=28.53 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
|+|+++-.+-.| ..+|+.|.++||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 345555554433 67999999999999998765
No 482
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=25.49 E-value=1.2e+02 Score=29.90 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=53.0
Q ss_pred EeecccchHhhhccc-----CccccccccCchhHHHHhhcC-----------------CcEeccCccccchhhHHHHHHH
Q 046605 352 IIRGWAPQVLILDHE-----AVGGFVTHCGWNSILEGVTAG-----------------VPLVTWPVYAEQFYNEKIVNEV 409 (487)
Q Consensus 352 ~~~~~vp~~~ll~~~-----~~~~~I~HGG~gs~~eal~~G-----------------vP~l~~P~~~DQ~~~a~rv~~~ 409 (487)
.+++|+-+.-=++.. ....++|.||..+..-|+.++ .|.+.++-.. ++-+.+-+ ..
T Consensus 83 ~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~ 160 (373)
T PF00282_consen 83 EVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RI 160 (373)
T ss_dssp HHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HH
T ss_pred HHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ce
Confidence 345565554333311 234689999988887776432 4566666433 45555556 68
Q ss_pred hhceEeecccccccccCCccCHHHHHHHHHHHhc
Q 046605 410 LKIGIGVGIQKWCRIVGDFVKREAIVKAVNEIMM 443 (487)
Q Consensus 410 ~G~G~~l~~~~~~~~~~~~~~~~~l~~~i~~ll~ 443 (487)
+|+|+..-.. +.++.++.++|.++|.+...
T Consensus 161 lGlg~~~I~~----~~~~~md~~~L~~~l~~~~~ 190 (373)
T PF00282_consen 161 LGLGVRKIPT----DEDGRMDIEALEKALEKDIA 190 (373)
T ss_dssp TTSEEEEE-B----BTTSSB-HHHHHHHHHHHHH
T ss_pred eeeEEEEecC----CcchhhhHHHhhhhhccccc
Confidence 8999665432 24567899999999987653
No 483
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=25.47 E-value=1e+02 Score=31.37 Aligned_cols=35 Identities=37% Similarity=0.359 Sum_probs=26.6
Q ss_pred HHHHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEE
Q 046605 109 KPLEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVF 146 (487)
Q Consensus 109 ~~l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 146 (487)
.++.+.++..+||++|... ....+|..+|+|++.+
T Consensus 385 ~e~~~~i~~~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEYKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhcCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 3456666778999999873 3566888999999876
No 484
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=25.46 E-value=35 Score=27.79 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeCCCCccchhh
Q 046605 19 GHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSR 52 (487)
Q Consensus 19 GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~ 52 (487)
-.+--.+-++..|.++||+|+++.++.....++-
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 3444577889999999999999999865544443
No 485
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=25.40 E-value=6.4e+02 Score=28.95 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCC--CC----hHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 6 CQLHIFFFPFLAH--GH----MIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 6 ~~~~Il~~~~~~~--GH----~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
...||+++-.+.. |+ =+..++++++|.+.||+|.++...
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~n 597 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYN 597 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecC
Confidence 4568999976643 43 256789999999999999988764
No 486
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=25.28 E-value=69 Score=25.41 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCccchh
Q 046605 22 IPTVDMAKLFTTRGVKASVITTPGNAPHLS 51 (487)
Q Consensus 22 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~ 51 (487)
-|++.|.-...-|||+++++.+..+.+.+.
T Consensus 10 k~L~eIll~FilrGHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 10 KALVEILLHFILRGHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHhccCeeEEEChHHHhcccc
Confidence 456667777778999999999987765543
No 487
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=25.26 E-value=4.6e+02 Score=22.88 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=40.2
Q ss_pred eE-EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhh--hhhccCcceeEEEee
Q 046605 8 LH-IFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQ--KASELGIELDVKIIK 70 (487)
Q Consensus 8 ~~-Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~--~~~~~g~~i~~~~i~ 70 (487)
.| |+|+..+..-|---+..+++.|.+.|.+|.+++-..-.+..++... ...+.+.+-+|..+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~ 173 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVP 173 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeC
Confidence 45 6777778777877788999999999999888876544433332211 122223345566664
No 488
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.20 E-value=1.1e+02 Score=28.02 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=26.1
Q ss_pred CCCCCCceEEEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEeC
Q 046605 1 MASGICQLHIFFFPFLAH-GHMIPTVDMAKLFTTRGVKASVITT 43 (487)
Q Consensus 1 m~~~~~~~~Il~~~~~~~-GH~~p~l~La~~L~~rGh~Vt~~~~ 43 (487)
|+..++. |+++++.++. +-+ -.++|++|+++|++|.+...
T Consensus 1 ~~~~l~~-k~~lItGas~~~gI--G~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 1 MSGILSG-KKIVVMGVANKRSI--AWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CccccCC-CEEEEeCCCCCCch--HHHHHHHHHHCCCEEEEecC
Confidence 5554443 4555655542 222 37899999999999987753
No 489
>PRK05858 hypothetical protein; Provisional
Probab=25.14 E-value=3.2e+02 Score=28.47 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=20.7
Q ss_pred ccccccCc------hhHHHHhhcCCcEeccC
Q 046605 370 GFVTHCGW------NSILEGVTAGVPLVTWP 394 (487)
Q Consensus 370 ~~I~HGG~------gs~~eal~~GvP~l~~P 394 (487)
+++.|.|- +.+++|...++|+|++.
T Consensus 70 v~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 70 VAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 37778774 48899999999999986
No 490
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=25.08 E-value=1.3e+02 Score=29.70 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=29.8
Q ss_pred CceEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 046605 6 CQLHIFFFP--FLAHGHMIPTVDMAKLFTTRGVKASVIT 42 (487)
Q Consensus 6 ~~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 42 (487)
++++|+.+. =|+-|-..-...||..|+.+|++|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 345554443 4588999999999999999999999885
No 491
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=25.02 E-value=1.1e+02 Score=29.08 Aligned_cols=73 Identities=10% Similarity=0.066 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccCccccccccCch
Q 046605 299 FTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEAVGGFVTHCGWN 378 (487)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~~~~~I~HGG~g 378 (487)
.+.+....+.+++.+-..+.||.+.+.... .++.++++...+-.+|++ ||=..-..
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~----------------------~rlL~~lD~~~i~~~PK~--fiGySDiT 105 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDDS----------------------NELLPYLDYELIKKNPKI--FIGYSDIT 105 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccCH----------------------hhhhhhcCHHHHhhCCCE--EEeccHHH
Confidence 355668889999999999999998876521 334444555555555554 55555555
Q ss_pred hHHHHhh--cCCcEeccCc
Q 046605 379 SILEGVT--AGVPLVTWPV 395 (487)
Q Consensus 379 s~~eal~--~GvP~l~~P~ 395 (487)
+++-+++ .|++.+.=|.
T Consensus 106 aL~~al~~~~g~~t~hGp~ 124 (308)
T cd07062 106 ALHLAIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHHHHHhcCCeEEECcc
Confidence 5555553 2555555554
No 492
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=24.90 E-value=4.5e+02 Score=22.62 Aligned_cols=102 Identities=10% Similarity=0.064 Sum_probs=48.5
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCccchhhhhhhhhccCcceeEEEeeCCCccCCCCCCCccccc
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPGNAPHLSRSIQKASELGIELDVKIIKFPSAEAGLPEGWENLDA 87 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~v~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~ 87 (487)
-.|-+.+..+.|-....+.+|-.-+-+|.+|.++-.=......... ......+ ++.+.... .++....+
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~-~~l~~l~-~~~~~~~g---------~~f~~~~~ 72 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGEL-KALKKLP-NVEIERFG---------KGFVWRMN 72 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHH-HHHGGGT---EEEE-----------TT----GG
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHH-HHHHhCC-eEEEEEcC---------CcccccCC
Confidence 4577888889999998777777777778888888753221110000 0111112 35555442 11111111
Q ss_pred chhhhhHHHHHHHHHHHHhhhHHHHHHHhhCCCCEEEeCCC
Q 046605 88 ITNEVNRELIVKFYMATTKLQKPLEQLLQEHKPDCLVADMF 128 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVI~D~~ 128 (487)
. .. .. ...+.......++.+.+..+|+||.|-.
T Consensus 73 ~------~~-~~-~~~~~~~~~~a~~~i~~~~~dlvILDEi 105 (172)
T PF02572_consen 73 E------EE-ED-RAAAREGLEEAKEAISSGEYDLVILDEI 105 (172)
T ss_dssp G------HH-HH-HHHHHHHHHHHHHHTT-TT-SEEEEETH
T ss_pred C------cH-HH-HHHHHHHHHHHHHHHhCCCCCEEEEcch
Confidence 1 11 11 3344445566777888889999999964
No 493
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=24.79 E-value=99 Score=27.29 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 046605 5 ICQLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVI 41 (487)
Q Consensus 5 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 41 (487)
.+.++|+|+-.+.. -..+|+.|.+.||+|+++
T Consensus 26 l~gk~v~I~G~G~v-----G~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 26 LEGKTVAVQGLGKV-----GYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCEEEEECCCHH-----HHHHHHHHHHCCCEEEEE
Confidence 45678888877643 367899999999999954
No 494
>PRK10037 cell division protein; Provisional
Probab=24.74 E-value=1.2e+02 Score=27.76 Aligned_cols=36 Identities=17% Similarity=-0.045 Sum_probs=29.4
Q ss_pred EEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 9 HIFFFP-FLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 9 ~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
.|.|.. =|+-|-..-...||.+|+++|++|.++=-+
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 455665 457899999999999999999999999433
No 495
>PRK11914 diacylglycerol kinase; Reviewed
Probab=24.72 E-value=1.3e+02 Score=28.46 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHHhcCCcEEEEecCCCCCCCcccccccCchhHHHHhcCCCcEeecccchHhhhcccC
Q 046605 288 VVYICFGSVANFTSAQLMEIAMGLEASGQNFIWVVRKNKNNGGEEEKEDWLPEGFEKRMEGKGLIIRGWAPQVLILDHEA 367 (487)
Q Consensus 288 ~v~vs~Gs~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~vp~~~ll~~~~ 367 (487)
.++++--|-.....+....+.+.+++.++.+.+........ ..-+-........+
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~-------------------------~~~~a~~~~~~~~d 66 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHD-------------------------ARHLVAAALAKGTD 66 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHH-------------------------HHHHHHHHHhcCCC
Q ss_pred ccccccccCchhHHHHh----hcCCcEeccC
Q 046605 368 VGGFVTHCGWNSILEGV----TAGVPLVTWP 394 (487)
Q Consensus 368 ~~~~I~HGG~gs~~eal----~~GvP~l~~P 394 (487)
+ +|--||=||+.|++ ..++|+-++|
T Consensus 67 ~--vvv~GGDGTi~evv~~l~~~~~~lgiiP 95 (306)
T PRK11914 67 A--LVVVGGDGVISNALQVLAGTDIPLGIIP 95 (306)
T ss_pred E--EEEECCchHHHHHhHHhccCCCcEEEEe
No 496
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.70 E-value=1.5e+02 Score=27.29 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTPG 45 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 45 (487)
+++|+++-..+ =...|++.|...++.+++.+.-.
T Consensus 2 ~~~ilvlGGT~-----Dar~la~~L~~~~~~~~~ss~t~ 35 (257)
T COG2099 2 MMRILLLGGTS-----DARALAKKLAAAPVDIILSSLTG 35 (257)
T ss_pred CceEEEEeccH-----HHHHHHHHhhccCccEEEEEccc
Confidence 45566653322 34789999999997777766543
No 497
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=24.63 E-value=1e+02 Score=26.80 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 8 LHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 8 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
|||.++ +.||+ -+.+|..|+++||+|+.+=..
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 567776 44444 377889999999999988654
No 498
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.60 E-value=77 Score=29.82 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 046605 7 QLHIFFFPFLAHGHMIPTVDMAKLFTTRGVKASVITTP 44 (487)
Q Consensus 7 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 44 (487)
..||.|+-.|..| ..+|..|+.+||+|+++...
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 4679998777666 56888999999999999754
No 499
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=24.59 E-value=78 Score=31.70 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=25.1
Q ss_pred HHHHHhhCCCCEEEeCCCCcchHHHHHHhCCCeEEE
Q 046605 111 LEQLLQEHKPDCLVADMFFPWATDAAAKFGIPRLVF 146 (487)
Q Consensus 111 l~~~l~~~~pDlVI~D~~~~~~~~~A~~~giP~v~~ 146 (487)
+.+.+++.+||+||..+. ...+|+++|+|++.+
T Consensus 350 ~~~~~~~~~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 350 FFEILEMLKPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHhcCCCEEEecCc---cchhhhhcCCCEEec
Confidence 344556678999998864 335899999999876
No 500
>PRK10818 cell division inhibitor MinD; Provisional
Probab=24.54 E-value=1.1e+02 Score=28.23 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=30.7
Q ss_pred eEE-EEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 046605 8 LHI-FFFP-FLAHGHMIPTVDMAKLFTTRGVKASVITTPGN 46 (487)
Q Consensus 8 ~~I-l~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 46 (487)
+|| .|+. -|+-|=..-...||..|+++|++|.++=-+..
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 344 3433 56889999999999999999999988866553
Done!