Your job contains 1 sequence.
>046606
MEASSLRKSSYHMKREKREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYC
LECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQQQLQPLIKDKTFISQSHSSPRTP
HRIIRRSRDEISSDRGRSRPLPWRRSFGRPGSVLDEVVSERKLRWRASVYNAGFQAVPLS
PRRCLGQNASGNNFVKGRLVQRIDPWIRRELQALLGGPRSIHYCSCGLYTFHCEPGRKVK
CSSKAA
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046606
(246 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064905 - symbol:AT2G39100 species:3702 "Arabi... 489 1.1e-46 1
ZFIN|ZDB-GENE-030131-6401 - symbol:toporsa "topoisomerase... 151 8.4e-11 2
UNIPROTKB|F1PHI0 - symbol:TOPORS "Uncharacterized protein... 144 4.4e-10 2
RGD|1305270 - symbol:Topors "topoisomerase I binding, arg... 144 1.8e-09 2
MGI|MGI:2146189 - symbol:Topors "topoisomerase I binding,... 144 2.3e-09 2
UNIPROTKB|Q9NS56 - symbol:TOPORS "E3 ubiquitin-protein li... 144 3.8e-09 2
UNIPROTKB|F1SE69 - symbol:TOPORS "Uncharacterized protein... 144 3.8e-09 2
UNIPROTKB|F1N329 - symbol:TOPORS "Uncharacterized protein... 144 4.3e-09 2
TAIR|locus:2123446 - symbol:AT4G10940 "AT4G10940" species... 138 5.5e-09 1
DICTYBASE|DDB_G0281183 - symbol:DDB_G0281183 "RING zinc f... 118 5.5e-09 2
UNIPROTKB|F8W6K1 - symbol:SCAF11 "Protein SCAF11" species... 126 4.2e-08 1
TAIR|locus:505006599 - symbol:AT5G12310 species:3702 "Ara... 133 4.3e-07 1
TAIR|locus:2053225 - symbol:AT2G28920 species:3702 "Arabi... 115 8.4e-07 1
TAIR|locus:2150310 - symbol:AT5G19430 species:3702 "Arabi... 130 1.1e-06 1
ZFIN|ZDB-GENE-030616-560 - symbol:si:dkey-51a16.9 "si:dke... 113 1.4e-06 1
FB|FBgn0034410 - symbol:Topors "Topoisomerase I-interacti... 122 1.5e-06 2
ZFIN|ZDB-GENE-041010-71 - symbol:pex10 "peroxisome biogen... 127 4.6e-06 1
UNIPROTKB|F1NJF6 - symbol:RNF122 "Uncharacterized protein... 108 5.3e-06 1
UNIPROTKB|I3LDC9 - symbol:RNF141 "Uncharacterized protein... 123 6.2e-06 1
RGD|1561238 - symbol:RGD1561238 "similar to ring finger p... 105 1.2e-05 1
TAIR|locus:4515102991 - symbol:AT2G44581 "AT2G44581" spec... 105 2.3e-05 1
TAIR|locus:2034934 - symbol:AT1G18770 species:3702 "Arabi... 102 2.6e-05 1
TAIR|locus:2195871 - symbol:AT1G51930 species:3702 "Arabi... 102 2.6e-05 1
UNIPROTKB|Q32L15 - symbol:RNF141 "RING finger protein 141... 118 2.6e-05 1
UNIPROTKB|F1Q4F0 - symbol:RNF141 "RING finger protein 141... 118 2.6e-05 1
UNIPROTKB|Q8WVD5 - symbol:RNF141 "RING finger protein 141... 118 2.6e-05 1
MGI|MGI:1914400 - symbol:Rnf141 "ring finger protein 141"... 118 2.6e-05 1
RGD|1303154 - symbol:rnf141 "ring finger protein 141" spe... 118 2.6e-05 1
UNIPROTKB|Q6IV57 - symbol:Rnf141 "RING finger protein 141... 118 2.6e-05 1
UNIPROTKB|I3L768 - symbol:LOC100624129 "Uncharacterized p... 121 2.6e-05 1
UNIPROTKB|I3LSN3 - symbol:LOC100736805 "Uncharacterized p... 121 2.6e-05 1
UNIPROTKB|Q2XNS1 - symbol:RNF141 "RING finger protein 141... 118 2.7e-05 1
ZFIN|ZDB-GENE-040625-71 - symbol:rnf141 "ring finger prot... 117 3.1e-05 1
FB|FBgn0037384 - symbol:dgrn "degringolade" species:7227 ... 120 3.4e-05 1
TAIR|locus:2142449 - symbol:RING1 species:3702 "Arabidops... 119 3.9e-05 1
UNIPROTKB|Q9H9V4 - symbol:RNF122 "RING finger protein 122... 108 4.3e-05 1
TAIR|locus:2122348 - symbol:AT4G09100 species:3702 "Arabi... 100 4.4e-05 1
UNIPROTKB|Q99590 - symbol:SCAF11 "Protein SCAF11" species... 126 5.5e-05 1
UNIPROTKB|F1NHH0 - symbol:RNF185 "E3 ubiquitin-protein li... 99 5.6e-05 1
MGI|MGI:1261771 - symbol:Rnf24 "ring finger protein 24" s... 105 5.9e-05 1
RGD|1309384 - symbol:Rnf24 "ring finger protein 24" speci... 105 5.9e-05 1
RGD|1591776 - symbol:Pex10 "peroxisomal biogenesis factor... 118 6.1e-05 1
ZFIN|ZDB-GENE-080303-32 - symbol:zgc:175214 "zgc:175214" ... 107 6.2e-05 1
UNIPROTKB|E1BST1 - symbol:PEX10 "Uncharacterized protein"... 118 6.2e-05 1
UNIPROTKB|A8MTP4 - symbol:SCAF11 "Protein SCAF11" species... 97 9.5e-05 1
UNIPROTKB|A8MUK0 - symbol:SCAF11 "Protein SCAF11" species... 97 9.5e-05 1
UNIPROTKB|E9PN08 - symbol:RNF5 "E3 ubiquitin-protein liga... 97 9.5e-05 1
UNIPROTKB|Q32LD0 - symbol:RNF24 "Ring finger protein 24" ... 104 0.00011 1
UNIPROTKB|E2R402 - symbol:RNF24 "Uncharacterized protein"... 104 0.00011 1
UNIPROTKB|Q9Y225 - symbol:RNF24 "RING finger protein 24" ... 104 0.00011 1
DICTYBASE|DDB_G0289719 - symbol:DDB_G0289719 "SFRS2-inter... 123 0.00012 1
TAIR|locus:505006414 - symbol:AT4G00305 species:3702 "Ara... 96 0.00012 1
UNIPROTKB|E2RKG5 - symbol:SCAF11 "Uncharacterized protein... 123 0.00012 1
ZFIN|ZDB-GENE-040426-2324 - symbol:rnft1 "ring finger pro... 117 0.00013 1
TAIR|locus:505006547 - symbol:AT4G33565 species:3702 "Ara... 116 0.00013 1
MGI|MGI:2684988 - symbol:Pex10 "peroxisomal biogenesis fa... 115 0.00014 1
UNIPROTKB|F1Q2J1 - symbol:RNF122 "Uncharacterized protein... 105 0.00014 1
MGI|MGI:1916117 - symbol:Rnf122 "ring finger protein 122"... 105 0.00014 1
ZFIN|ZDB-GENE-091204-454 - symbol:si:ch1073-392o20.1 "si:... 105 0.00014 1
TAIR|locus:2074678 - symbol:AT3G11110 species:3702 "Arabi... 105 0.00018 1
TAIR|locus:2078092 - symbol:AT3G05670 "AT3G05670" species... 119 0.00020 1
UNIPROTKB|I3LS90 - symbol:SCAF11 "Uncharacterized protein... 121 0.00021 1
UNIPROTKB|I3LHN2 - symbol:SCAF11 "Uncharacterized protein... 121 0.00021 1
UNIPROTKB|E1BTQ2 - symbol:RNF8 "Uncharacterized protein" ... 98 0.00022 1
ZFIN|ZDB-GENE-040426-1024 - symbol:rnf181 "ring finger pr... 104 0.00023 1
DICTYBASE|DDB_G0282693 - symbol:pex10 "peroxisome biogene... 114 0.00024 1
UNIPROTKB|Q5ZM74 - symbol:RNF141 "RING finger protein 141... 110 0.00025 1
RGD|1598325 - symbol:Scaf11 "SR-related CTD-associated fa... 120 0.00027 1
SGD|S000005493 - symbol:HRT1 "RING finger containing subu... 93 0.00027 1
RGD|2319802 - symbol:LOC100365068 "rCG50794-like" species... 120 0.00027 1
UNIPROTKB|E1B8N1 - symbol:LOC521092 "Uncharacterized prot... 115 0.00039 1
ZFIN|ZDB-GENE-041114-40 - symbol:rnf24 "ring finger prote... 101 0.00041 1
UNIPROTKB|E2R2P8 - symbol:PEX10 "Uncharacterized protein"... 111 0.00042 1
UNIPROTKB|C9J1C6 - symbol:RNF181 "E3 ubiquitin-protein li... 98 0.00044 1
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 116 0.00055 1
UNIPROTKB|F1NDX0 - symbol:LOC100859635 "Uncharacterized p... 114 0.00064 1
UNIPROTKB|F1NFB8 - symbol:LOC100859635 "Uncharacterized p... 114 0.00064 1
TAIR|locus:2181032 - symbol:DAFL2 "DAF-Like gene 2" speci... 101 0.00074 1
UNIPROTKB|J3QRK3 - symbol:TRIM37 "E3 ubiquitin-protein li... 89 0.00076 1
UNIPROTKB|J3QSH5 - symbol:TRIM37 "E3 ubiquitin-protein li... 89 0.00076 1
TAIR|locus:2207066 - symbol:AT1G72220 species:3702 "Arabi... 110 0.00082 1
ZFIN|ZDB-GENE-041210-22 - symbol:scaf11 "SR-related CTD-a... 115 0.00083 1
ZFIN|ZDB-GENE-030131-6607 - symbol:rnf40 "ring finger pro... 114 0.00092 1
UNIPROTKB|I3LUY7 - symbol:I3LUY7 "Uncharacterized protein... 95 0.00097 1
>TAIR|locus:2064905 [details] [associations]
symbol:AT2G39100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 UniGene:At.37212
InterPro:IPR017907 HSSP:P28990 eggNOG:NOG244178 EMBL:AY065197
EMBL:AY081521 IPI:IPI00536162 RefSeq:NP_850310.1 UniGene:At.20141
ProteinModelPortal:Q8VZ73 SMR:Q8VZ73 IntAct:Q8VZ73 PaxDb:Q8VZ73
PRIDE:Q8VZ73 EnsemblPlants:AT2G39100.1 GeneID:818496
KEGG:ath:AT2G39100 TAIR:At2g39100 HOGENOM:HOG000093087
InParanoid:Q8VZ73 OMA:FWHELRC PhylomeDB:Q8VZ73
ProtClustDB:CLSN2680124 Genevestigator:Q8VZ73 Uniprot:Q8VZ73
Length = 296
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 97/229 (42%), Positives = 134/229 (58%)
Query: 1 MEASSLRKSSYHMKREKREREKFVSRVISPAIRGQKCPICLDNLTDRRTA-VLKVCTHAY 59
+ +S+ SS H+ R KF R I PA++G+ CPICL+NLT+RR+A V+ VC H Y
Sbjct: 4 LPSSTAPSSSRHL-RSPESIAKFAGRAIFPALQGKSCPICLENLTERRSAAVITVCKHGY 62
Query: 60 CLECIEKWSNLKRNCPLCNAPFRSWFYRINXXXXXXXXXXXXXXIKDKTFISQSHSSPRT 119
CL CI KWS+ KRNCPLCN F SWF ++ ++D+ ++ ++P
Sbjct: 63 CLACIRKWSSFKRNCPLCNTRFDSWFI-VSDFASRKYHKEQLPILRDRETLTYHRNNPSD 121
Query: 120 PHXXXXXXXXXXXXXXXXXXPLPWRRSFGRPGSVLDEVVSERKLRWRASVYNAGFQAVPL 179
PLPWRRSFGRPGSV D V+ +RKL+WRAS+Y +AV L
Sbjct: 122 RRRIIQRSRDVLENSSSRSRPLPWRRSFGRPGSVPDSVIFQRKLQWRASIYTKQLRAVRL 181
Query: 180 SPRRCLGQNASGNNFVKGRLVQRIDPWIRRELQALLGGPRS---IHYCS 225
RR L + + N++ K ++ +RI+PWIRRELQA+LG P +H+ S
Sbjct: 182 HSRR-LELSLAVNDYTKAKITERIEPWIRRELQAVLGDPDPSVIVHFAS 229
>ZFIN|ZDB-GENE-030131-6401 [details] [associations]
symbol:toporsa "topoisomerase I binding,
arginine/serine-rich a" species:7955 "Danio rerio" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 ZFIN:ZDB-GENE-030131-6401 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 eggNOG:NOG244178 OrthoDB:EOG47H5PC EMBL:BC125819
IPI:IPI00512796 UniGene:Dr.22874 InParanoid:A0JMC0
ArrayExpress:A0JMC0 Uniprot:A0JMC0
Length = 846
Score = 151 (58.2 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 28/65 (43%), Positives = 38/65 (58%)
Query: 24 VSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83
+S+ SP KCPICLD+ + + L VC H +C CI +WS K CPLC PF S
Sbjct: 18 ISKGASPE---SKCPICLDHF--KNISYLDVCLHKFCFCCIHEWSKNKAECPLCKQPFNS 72
Query: 84 WFYRI 88
+++ I
Sbjct: 73 FYHTI 77
Score = 54 (24.1 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 151 GSVLDEVVSERKLRWRASVYNAGFQAVPLSPRRCLGQNASGNNFVKG-RLVQRIDPWIRR 209
G L + + +++R ++Y G Q + + S F + + + PW+RR
Sbjct: 163 GRSLRSLQDQEVVKFRRALYRRGVQVQSVQDGGRT-RETSAEFFKRNPACLHGLVPWLRR 221
Query: 210 ELQALLGGPRSI 221
EL L G S+
Sbjct: 222 ELTVLYGAHGSL 233
>UNIPROTKB|F1PHI0 [details] [associations]
symbol:TOPORS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0036064 "cilium basal body" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GO:GO:0036064 CTD:10210
GeneTree:ENSGT00530000064170 KO:K10631 OMA:DIINFRR
EMBL:AAEX03007933 EMBL:AAEX03007934 RefSeq:XP_003639434.1
Ensembl:ENSCAFT00000002842 GeneID:481577 KEGG:cfa:481577
Uniprot:F1PHI0
Length = 1043
Score = 144 (55.7 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 17 KREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPL 76
K K V + A KCPICLD + + L C H +C C+++WS K CPL
Sbjct: 83 KAGTSKLQQTVPADASPDSKCPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPL 140
Query: 77 CNAPFRSWFYRI 88
C PF S F+ +
Sbjct: 141 CKQPFDSIFHSV 152
Score = 62 (26.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 154 LDEVVSERKLRWRASVYNAGFQAVPLSPR-RCLGQNASGNNFVKG-RLVQRIDPWIRREL 211
L ++ + + +R ++Y AG + + RC ++ S F + + R+ PW++REL
Sbjct: 248 LRKIQEQDIINFRRTLYRAGARVRNIEDGGRC--RDISAEFFRRNPACLHRLVPWLKREL 305
Query: 212 QALLGGPRSI 221
L G S+
Sbjct: 306 TVLFGAHGSL 315
>RGD|1305270 [details] [associations]
symbol:Topors "topoisomerase I binding, arginine/serine-rich, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000922 "spindle pole" evidence=IEA;ISO] [GO:0000930
"gamma-tubulin complex" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003823 "antigen binding" evidence=IEA;ISO]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005814 "centriole"
evidence=IEA;ISO] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006513 "protein
monoubiquitination" evidence=IEA;ISO] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA;ISO] [GO:0016605 "PML body"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IEA;ISO]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0016925 "protein
sumoylation" evidence=IEA;ISO] [GO:0019789 "SUMO ligase activity"
evidence=IEA;ISO] [GO:0032391 "photoreceptor connecting cilium"
evidence=IEA;ISO] [GO:0034504 "protein localization to nucleus"
evidence=ISO] [GO:0036064 "cilium basal body" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA;ISO] [GO:0044547 "DNA topoisomerase binding"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0051443
"positive regulation of ubiquitin-protein ligase activity"
evidence=IEA;ISO] [GO:0051457 "maintenance of protein location in
nucleus" evidence=IEA;ISO] [GO:0070936 "protein K48-linked
ubiquitination" evidence=IEA;ISO] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 RGD:1305270 Prosite:PS00518
GO:GO:0045893 GO:GO:0008630 GO:GO:0043161 GO:GO:0005814
GO:GO:0003823 GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0016605 GO:GO:0008270 GO:GO:0042127 GO:GO:0016853
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 EMBL:CH473962
GO:GO:0000922 GO:GO:0000930 GO:GO:0051457 InterPro:IPR017907
GO:GO:0070936 GO:GO:0032391 GO:GO:0051443 GO:GO:0016925
GO:GO:0006513 GO:GO:0036064 GO:GO:0019789 CTD:10210
GeneTree:ENSGT00530000064170 KO:K10631 OrthoDB:EOG47H5PC
IPI:IPI00950361 RefSeq:NP_001102128.1 UniGene:Rn.55605
Ensembl:ENSRNOT00000066081 GeneID:362501 KEGG:rno:362501
UCSC:RGD:1305270 NextBio:680139 Uniprot:D3ZZE0
Length = 1042
Score = 144 (55.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 17 KREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPL 76
K K V + A KCPICLD + + L C H +C C+++WS K CPL
Sbjct: 84 KAGTSKLQQTVPADASPDSKCPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPL 141
Query: 77 CNAPFRSWFYRI 88
C PF S F+ +
Sbjct: 142 CKQPFDSIFHSV 153
Score = 56 (24.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 154 LDEVVSERKLRWRASVYNAGFQAVPLSPRRCLGQNASGNNFVKG-RLVQRIDPWIRRELQ 212
L +V + + +R ++Y AG + + ++ S F + + R+ PW++REL
Sbjct: 249 LRKVQEQDIINFRRTLYRAGVRVRSIEDGGRY-RDISAEFFRRNPACLHRLVPWLKRELT 307
Query: 213 ALLGGPRSI 221
L G S+
Sbjct: 308 VLFGAHGSL 316
>MGI|MGI:2146189 [details] [associations]
symbol:Topors "topoisomerase I binding,
arginine/serine-rich" species:10090 "Mus musculus" [GO:0000922
"spindle pole" evidence=ISO] [GO:0000930 "gamma-tubulin complex"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003823
"antigen binding" evidence=ISO] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005814
"centriole" evidence=ISO] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006513 "protein
monoubiquitination" evidence=ISO] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=ISO] [GO:0016605 "PML body" evidence=ISO]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=ISO] [GO:0019789 "SUMO
ligase activity" evidence=ISO] [GO:0032391 "photoreceptor
connecting cilium" evidence=ISO;IDA] [GO:0034504 "protein
localization to nucleus" evidence=ISO] [GO:0036064 "cilium basal
body" evidence=ISO;IDA] [GO:0042127 "regulation of cell
proliferation" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0044547 "DNA topoisomerase binding" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051443 "positive
regulation of ubiquitin-protein ligase activity" evidence=ISO]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=ISO] [GO:0070936 "protein K48-linked ubiquitination"
evidence=ISO] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
MGI:MGI:2146189 Prosite:PS00518 GO:GO:0045893 GO:GO:0008630
GO:GO:0043161 GO:GO:0005814 GO:GO:0003823 GO:GO:0046872
GO:GO:0003677 GO:GO:0016607 GO:GO:0016605 GO:GO:0008270
GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000922 GO:GO:0000930 GO:GO:0051457 InterPro:IPR017907
GO:GO:0070936 GO:GO:0032391 GO:GO:0051443 GO:GO:0034504
GO:GO:0016925 GO:GO:0006513 GO:GO:0036064 GO:GO:0019789 CTD:10210
eggNOG:NOG244178 GeneTree:ENSGT00530000064170 KO:K10631
HOVERGEN:HBG080410 OMA:DIINFRR OrthoDB:EOG47H5PC EMBL:AB072395
EMBL:AB104865 EMBL:BC037141 EMBL:BC040797 EMBL:AK044564
EMBL:AK134075 EMBL:AK140250 EMBL:AK143025 EMBL:AK153743
IPI:IPI00330897 RefSeq:NP_598858.2 UniGene:Mm.251548
ProteinModelPortal:Q80Z37 SMR:Q80Z37 MINT:MINT-1789728
STRING:Q80Z37 PhosphoSite:Q80Z37 PRIDE:Q80Z37
Ensembl:ENSMUST00000042575 GeneID:106021 KEGG:mmu:106021
InParanoid:Q80Z37 NextBio:358016 Bgee:Q80Z37 CleanEx:MM_TOPORS
Genevestigator:Q80Z37 GermOnline:ENSMUSG00000036822 Uniprot:Q80Z37
Length = 1033
Score = 144 (55.7 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 17 KREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPL 76
K K V + A KCPICLD + + L C H +C C+++WS K CPL
Sbjct: 84 KAGTSKLQQTVPADASPDSKCPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPL 141
Query: 77 CNAPFRSWFYRI 88
C PF S F+ +
Sbjct: 142 CKQPFDSIFHSV 153
Score = 55 (24.4 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 154 LDEVVSERKLRWRASVYNAGFQAVPLSPRRCLGQNASGNNFVKG-RLVQRIDPWIRRELQ 212
L ++ + + +R ++Y AG + + ++ S F + + R+ PW++REL
Sbjct: 249 LRKIQEQDIINFRRTLYRAGVRVRSIEDGGRY-RDISAEFFRRNPACLHRLVPWLKRELT 307
Query: 213 ALLGGPRSI 221
L G S+
Sbjct: 308 VLFGAHGSL 316
>UNIPROTKB|Q9NS56 [details] [associations]
symbol:TOPORS "E3 ubiquitin-protein ligase Topors"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042127 "regulation of cell proliferation"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0044547 "DNA topoisomerase binding" evidence=IPI]
[GO:0006351 "transcription, DNA-dependent" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003823 "antigen
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IMP;IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019789 "SUMO ligase activity" evidence=IMP;IDA]
[GO:0016925 "protein sumoylation" evidence=IMP;IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0034504 "protein localization to nucleus" evidence=IMP]
[GO:0051443 "positive regulation of ubiquitin-protein ligase
activity" evidence=IDA] [GO:0070936 "protein K48-linked
ubiquitination" evidence=IDA] [GO:0006513 "protein
monoubiquitination" evidence=IDA] [GO:0032391 "photoreceptor
connecting cilium" evidence=IDA] [GO:0005868 "cytoplasmic dynein
complex" evidence=TAS] [GO:0036064 "cilium basal body"
evidence=IDA] [GO:0030496 "midbody" evidence=TAS] [GO:0010842
"retina layer formation" evidence=ISS] [GO:0035845 "photoreceptor
cell outer segment organization" evidence=ISS] [GO:0046548 "retinal
rod cell development" evidence=ISS] [GO:0046549 "retinal cone cell
development" evidence=ISS] [GO:0043066 "negative regulation of
apoptotic process" evidence=ISS] [GO:0000922 "spindle pole"
evidence=IDA] [GO:0000930 "gamma-tubulin complex" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0045893
GO:GO:0043066 GO:GO:0008630 GO:GO:0043161 GO:GO:0005814
GO:GO:0003823 GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0016605 GO:GO:0008270 GO:GO:0006351 Orphanet:791
GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0035845
GO:GO:0010842 GO:GO:0004842 GO:GO:0030496 GO:GO:0000922
GO:GO:0046548 GO:GO:0000930 GO:GO:0051457 InterPro:IPR017907
GO:GO:0070936 GO:GO:0032391 GO:GO:0051443 GO:GO:0016925
GO:GO:0006513 GO:GO:0046549 GO:GO:0036064 GO:GO:0019789
EMBL:AL353671 CTD:10210 eggNOG:NOG244178 KO:K10631 ChiTaRS:TOPORS
EMBL:AF098300 EMBL:AB045732 EMBL:AB045733 EMBL:BC060884 EMBL:U82939
IPI:IPI00396077 IPI:IPI00643426 RefSeq:NP_001182551.1
RefSeq:NP_005793.2 UniGene:Hs.589962 ProteinModelPortal:Q9NS56
SMR:Q9NS56 IntAct:Q9NS56 MINT:MINT-94004 STRING:Q9NS56
PhosphoSite:Q9NS56 DMDM:74752935 PaxDb:Q9NS56 PRIDE:Q9NS56
Ensembl:ENST00000360538 Ensembl:ENST00000379858 GeneID:10210
KEGG:hsa:10210 UCSC:uc003zrb.3 UCSC:uc003zrc.3
GeneCards:GC09M032496 HGNC:HGNC:21653 MIM:609507 MIM:609923
neXtProt:NX_Q9NS56 PharmGKB:PA134979531 HOGENOM:HOG000231723
HOVERGEN:HBG080410 InParanoid:Q9NS56 OMA:DIINFRR OrthoDB:EOG47H5PC
PhylomeDB:Q9NS56 GenomeRNAi:10210 NextBio:38656 Bgee:Q9NS56
CleanEx:HS_TOPORS Genevestigator:Q9NS56 GermOnline:ENSG00000197579
Uniprot:Q9NS56
Length = 1045
Score = 144 (55.7 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 17 KREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPL 76
K K V + A KCPICLD + + L C H +C C+++WS K CPL
Sbjct: 83 KAGTSKLQQTVPADASPDSKCPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPL 140
Query: 77 CNAPFRSWFYRI 88
C PF S F+ +
Sbjct: 141 CKQPFDSIFHSV 152
Score = 53 (23.7 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 154 LDEVVSERKLRWRASVYNAGFQAVPLSPRRCLGQNASGNNFVKG-RLVQRIDPWIRRELQ 212
L ++ + + +R ++Y AG + + ++ S F + + R+ PW++REL
Sbjct: 247 LRKIQEQDIINFRRTLYRAGARVRNIEDGGRY-RDISAEFFRRNPACLHRLVPWLKRELT 305
Query: 213 ALLGGPRSI 221
L G S+
Sbjct: 306 VLFGAHGSL 314
>UNIPROTKB|F1SE69 [details] [associations]
symbol:TOPORS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032391 "photoreceptor connecting cilium" evidence=IDA]
[GO:0070936 "protein K48-linked ubiquitination" evidence=IEA]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IEA] [GO:0051443 "positive regulation of ubiquitin-protein
ligase activity" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0044547 "DNA
topoisomerase binding" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0042127 "regulation of cell proliferation" evidence=IEA]
[GO:0036064 "cilium basal body" evidence=IEA] [GO:0019789 "SUMO
ligase activity" evidence=IEA] [GO:0016925 "protein sumoylation"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016605
"PML body" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0006513
"protein monoubiquitination" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0003823 "antigen binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000930 "gamma-tubulin
complex" evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0045893
GO:GO:0008630 GO:GO:0043161 GO:GO:0005814 GO:GO:0003823
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0016605
GO:GO:0008270 GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000922 GO:GO:0000930 GO:GO:0051457
InterPro:IPR017907 GO:GO:0070936 GO:GO:0032391 GO:GO:0051443
GO:GO:0016925 GO:GO:0006513 GO:GO:0036064 GO:GO:0019789
GeneTree:ENSGT00530000064170 OMA:DIINFRR EMBL:CU928691
Ensembl:ENSSSCT00000012046 Uniprot:F1SE69
Length = 1049
Score = 144 (55.7 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 17 KREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPL 76
K K V + A KCPICLD + + L C H +C C+++WS K CPL
Sbjct: 86 KAGTSKLQQTVPADASPDSKCPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPL 143
Query: 77 CNAPFRSWFYRI 88
C PF S F+ +
Sbjct: 144 CKQPFDSIFHSV 155
Score = 53 (23.7 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 154 LDEVVSERKLRWRASVYNAGFQAVPLSPRRCLGQNASGNNFVKG-RLVQRIDPWIRRELQ 212
L ++ + + +R ++Y AG + + ++ S F + + R+ PW++REL
Sbjct: 251 LRKIQEQDIINFRRTLYRAGARVRNIEDGGRY-RDISAEFFRRNPACLHRLVPWLKRELT 309
Query: 213 ALLGGPRSI 221
L G S+
Sbjct: 310 VLFGAHGSL 318
>UNIPROTKB|F1N329 [details] [associations]
symbol:TOPORS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0044547 "DNA topoisomerase
binding" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0042127 "regulation of
cell proliferation" evidence=IEA] [GO:0036064 "cilium basal body"
evidence=IEA] [GO:0032391 "photoreceptor connecting cilium"
evidence=IEA] [GO:0019789 "SUMO ligase activity" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0006513 "protein monoubiquitination"
evidence=IEA] [GO:0005814 "centriole" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0003823
"antigen binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000930 "gamma-tubulin complex" evidence=IEA]
[GO:0000922 "spindle pole" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0043015 "gamma-tubulin binding" evidence=IDA] [GO:0070936
"protein K48-linked ubiquitination" evidence=IEA] [GO:0051457
"maintenance of protein location in nucleus" evidence=IEA]
[GO:0051443 "positive regulation of ubiquitin-protein ligase
activity" evidence=IEA] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0005813 GO:GO:0045893
GO:GO:0008630 GO:GO:0043161 GO:GO:0005814 GO:GO:0003823
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0016605
GO:GO:0008270 GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000922 GO:GO:0000930 GO:GO:0051457
InterPro:IPR017907 GO:GO:0070936 GO:GO:0032391 GO:GO:0051443
GO:GO:0043015 GO:GO:0016925 GO:GO:0006513 GO:GO:0036064
GO:GO:0019789 GeneTree:ENSGT00530000064170 OMA:DIINFRR
EMBL:DAAA02021989 IPI:IPI00713224 UniGene:Bt.56498
Ensembl:ENSBTAT00000048966 NextBio:20873711 ArrayExpress:F1N329
Uniprot:F1N329
Length = 1100
Score = 144 (55.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 17 KREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPL 76
K K V + A KCPICLD + + L C H +C C+++WS K CPL
Sbjct: 146 KAGTSKLQQTVPADASPDSKCPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPL 203
Query: 77 CNAPFRSWFYRI 88
C PF S F+ +
Sbjct: 204 CKQPFDSIFHSV 215
Score = 53 (23.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 154 LDEVVSERKLRWRASVYNAGFQAVPLSPRRCLGQNASGNNFVKG-RLVQRIDPWIRRELQ 212
L ++ + + +R ++Y AG + + ++ S F + + R+ PW++REL
Sbjct: 311 LRKIQEQDIINFRRTLYRAGARVRNIEDGGRY-RDISAEFFRRNPACLHRLVPWLKRELT 369
Query: 213 ALLGGPRSI 221
L G S+
Sbjct: 370 VLFGAHGSL 378
>TAIR|locus:2123446 [details] [associations]
symbol:AT4G10940 "AT4G10940" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50089 SMART:SM00184
SMART:SM00249 Prosite:PS00518 EMBL:CP002687 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR017907
IPI:IPI00519012 RefSeq:NP_567371.1 UniGene:At.54267
ProteinModelPortal:F4JN66 SMR:F4JN66 EnsemblPlants:AT4G10940.1
GeneID:826693 KEGG:ath:AT4G10940 OMA:DEDCCIE Uniprot:F4JN66
Length = 192
Score = 138 (53.6 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82
I G++C IC+D + DR VL C H +C ECI+ WS + CPLC F+
Sbjct: 26 IEGERCGICMDIIIDR--GVLDCCQHWFCFECIDNWSTIMNLCPLCQREFQ 74
>DICTYBASE|DDB_G0281183 [details] [associations]
symbol:DDB_G0281183 "RING zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR002483
Pfam:PF01480 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
dictyBase:DDB_G0281183 Prosite:PS00518 GO:GO:0046872
EMBL:AAFI02000040 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 eggNOG:NOG244178
RefSeq:XP_640869.1 ProteinModelPortal:Q54UA7
EnsemblProtists:DDB0233761 GeneID:8622925 KEGG:ddi:DDB_G0281183
InParanoid:Q54UA7 OMA:PWIKREL Uniprot:Q54UA7
Length = 548
Score = 118 (46.6 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 14 KREKREREKFVSRVISPAIRGQKCPICL---DNLTDRRTAVLKVCTHAYCLECIEKWSNL 70
+ E ++ V + + C ICL +NLT L +C H +C CI +WS L
Sbjct: 77 EEEYNNDDEEVDKPLKLICEDSTCSICLSPFENLT-----FLDICFHQFCFVCILQWSEL 131
Query: 71 KRNCPLCNAPFRSWFYRI 88
+ CPLC + + S Y++
Sbjct: 132 NQRCPLCKSEYHSLIYQV 149
Score = 80 (33.2 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 166 RASVYNAGFQAVPLSP--RRCLGQNASGNNFVKGRLVQRIDPWIRRELQALL 215
R S+Y+ +A+P+ P + L + +NF + ++ PWI+RELQ++L
Sbjct: 221 RKSIYSRNVKAIPMVPPFKLYLDPQSINSNFKSFKT--KVQPWIKRELQSIL 270
>UNIPROTKB|F8W6K1 [details] [associations]
symbol:SCAF11 "Protein SCAF11" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 EMBL:AC000015 HGNC:HGNC:10784 ChiTaRS:SCAF11
EMBL:AC084878 IPI:IPI00852713 ProteinModelPortal:F8W6K1 SMR:F8W6K1
Ensembl:ENST00000266589 ArrayExpress:F8W6K1 Bgee:F8W6K1
Uniprot:F8W6K1
Length = 118
Score = 126 (49.4 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 14 KREKREREKFVSRVISPAI---RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL 70
K E E E+ IS + +CPICL+ L ++ + C H +C+ CI KW+
Sbjct: 31 KYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWAET 90
Query: 71 KRNCPLCNAPFRSWF 85
+CP+ PF++ F
Sbjct: 91 LASCPIDRKPFQAVF 105
>TAIR|locus:505006599 [details] [associations]
symbol:AT5G12310 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AL592312
InterPro:IPR017907 HSSP:P28990 eggNOG:NOG265787 EMBL:AY116954
EMBL:AK117718 IPI:IPI00535079 RefSeq:NP_568264.1 UniGene:At.28632
ProteinModelPortal:Q94CL1 SMR:Q94CL1 EnsemblPlants:AT5G12310.1
GeneID:831106 KEGG:ath:AT5G12310 TAIR:At5g12310
HOGENOM:HOG000151161 InParanoid:Q94CL1 OMA:EKPTCPQ PhylomeDB:Q94CL1
ProtClustDB:CLSN2689629 ArrayExpress:Q94CL1 Genevestigator:Q94CL1
Uniprot:Q94CL1
Length = 254
Score = 133 (51.9 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 16 EKREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRN-- 73
EK+ + F +S G C ICLD + + TA++K C HAYC+ CI +W++ K
Sbjct: 24 EKKTPQVF--NELSFGNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRWASYKEKPT 81
Query: 74 CPLCNAPF 81
CP C PF
Sbjct: 82 CPQCKLPF 89
>TAIR|locus:2053225 [details] [associations]
symbol:AT2G28920 species:3702 "Arabidopsis thaliana"
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 HSSP:Q9LRB7 EMBL:AC005727
EMBL:BT030073 IPI:IPI00534079 PIR:E84690 RefSeq:NP_180458.1
UniGene:At.52958 ProteinModelPortal:Q9ZV22 SMR:Q9ZV22 PaxDb:Q9ZV22
EnsemblPlants:AT2G28920.1 GeneID:817441 KEGG:ath:AT2G28920
TAIR:At2g28920 eggNOG:NOG317926 HOGENOM:HOG000154045
InParanoid:Q9ZV22 OMA:ICRAPFQ PhylomeDB:Q9ZV22
ProtClustDB:CLSN2913203 Genevestigator:Q9ZV22 Uniprot:Q9ZV22
Length = 145
Score = 115 (45.5 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 32 IRGQKCPICLDNL-TDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85
++ C ICL++ + VL C H + ++CI+ W K CP+C APF+ WF
Sbjct: 88 VKADVCVICLEDFKVNDVVRVLVRCKHVFHVDCIDSWCFYKLTCPICRAPFQ-WF 141
>TAIR|locus:2150310 [details] [associations]
symbol:AT5G19430 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 HSSP:P38398
eggNOG:NOG265787 HOGENOM:HOG000151161 ProtClustDB:CLSN2689629
EMBL:AF361602 EMBL:AY058228 IPI:IPI00525131 RefSeq:NP_568374.1
UniGene:At.19112 ProteinModelPortal:Q9ASY3 SMR:Q9ASY3 IntAct:Q9ASY3
EnsemblPlants:AT5G19430.1 GeneID:832063 KEGG:ath:AT5G19430
TAIR:At5g19430 InParanoid:Q9ASY3 OMA:CPQCKHP PhylomeDB:Q9ASY3
Genevestigator:Q9ASY3 Uniprot:Q9ASY3
Length = 255
Score = 130 (50.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 16 EKREREKFVSRVISPAI--RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRN 73
+ ++++K + P+ G C ICL + + TA++K C H YC+ CI +W++ K +
Sbjct: 23 QNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYCVTCILRWASCKES 82
Query: 74 --CPLCNAPF 81
CP C PF
Sbjct: 83 PTCPQCKHPF 92
>ZFIN|ZDB-GENE-030616-560 [details] [associations]
symbol:si:dkey-51a16.9 "si:dkey-51a16.9"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
ZFIN:ZDB-GENE-030616-560 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00700000104226
EMBL:BX530079 IPI:IPI00882963 Ensembl:ENSDART00000057687
ArrayExpress:F1Q9J1 Bgee:F1Q9J1 Uniprot:F1Q9J1
Length = 155
Score = 113 (44.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
++ GQ C +CL+ R + C+HA+ +C+ KW ++ CP+CN P
Sbjct: 85 SLLGQTCAVCLEEFRSRDELGVCPCSHAFHKKCLVKWLEIRSVCPMCNKP 134
>FB|FBgn0034410 [details] [associations]
symbol:Topors "Topoisomerase I-interacting protein"
species:7227 "Drosophila melanogaster" [GO:0044547 "DNA
topoisomerase binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IDA] [GO:0005652 "nuclear lamina" evidence=IDA]
[GO:0005700 "polytene chromosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0007095 "mitotic G2 DNA damage
checkpoint" evidence=IGI] InterPro:IPR001841 InterPro:IPR018957
PROSITE:PS50089 SMART:SM00184 Pfam:PF00097 Prosite:PS00518
EMBL:AE013599 GO:GO:0007095 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0005700 GO:GO:0000209
InterPro:IPR017907 GO:GO:0042787 GO:GO:0006997 GO:GO:0005521
GO:GO:0005652 EMBL:AY122186 RefSeq:NP_611388.1 UniGene:Dm.10778
ProteinModelPortal:Q9V8P9 SMR:Q9V8P9 IntAct:Q9V8P9 STRING:Q9V8P9
PaxDb:Q9V8P9 PRIDE:Q9V8P9 EnsemblMetazoa:FBtr0086570
EnsemblMetazoa:FBtr0331977 GeneID:37188 KEGG:dme:Dmel_CG15104
CTD:10210 FlyBase:FBgn0034410 eggNOG:NOG244178
GeneTree:ENSGT00530000064170 InParanoid:Q9V8P9 KO:K10631
OMA:FIHELFN OrthoDB:EOG42V6ZJ PhylomeDB:Q9V8P9 ChiTaRS:TOPORS
GenomeRNAi:37188 NextBio:802385 Bgee:Q9V8P9 GermOnline:CG15104
Uniprot:Q9V8P9
Length = 1038
Score = 122 (48.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRI 88
C ICL RR C H +C +C+ +WS +K CPLC PFR+ + +
Sbjct: 102 CAICLSRC--RRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPFRTIIHNV 151
Score = 58 (25.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 165 WRASVYNAGFQAVPLSPRRCLGQNASGNNFVKGRLVQ--RIDPWIRRELQALL 215
WR VY+ A+P+S F + Q R+ PWI R++ LL
Sbjct: 255 WRRYVYDRKLYALPVSDSVTGHFREWSARFYRNNPAQIHRLMPWIHRDIMCLL 307
>ZFIN|ZDB-GENE-041010-71 [details] [associations]
symbol:pex10 "peroxisome biogenesis factor 10"
species:7955 "Danio rerio" [GO:0016558 "protein import into
peroxisome matrix" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005779 "integral to peroxisomal membrane"
evidence=IEA] [GO:0007031 "peroxisome organization" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR025654 PROSITE:PS50089 SMART:SM00184 InterPro:IPR006845
Prosite:PS00518 ZFIN:ZDB-GENE-041010-71 GO:GO:0046872 GO:GO:0008270
GO:GO:0005779 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016558
InterPro:IPR017907 eggNOG:COG5574 KO:K13346 OMA:FRQRQRA
PANTHER:PTHR23350 Pfam:PF04757 CTD:5192 HOGENOM:HOG000180194
HOVERGEN:HBG053568 GeneTree:ENSGT00510000048446 OrthoDB:EOG4TB4C1
EMBL:CU570796 EMBL:BC083412 IPI:IPI00504298 RefSeq:NP_001005994.1
UniGene:Dr.91787 STRING:Q5XJ92 Ensembl:ENSDART00000060853
GeneID:449821 KEGG:dre:449821 InParanoid:Q5XJ92 NextBio:20832893
Uniprot:Q5XJ92
Length = 318
Score = 127 (49.8 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 1 MEASSLRKSSYHMKREKREREKFVSRVISPAI-RGQKCPICLDNLTDRRTAVLKVCTHAY 59
++ ++LR+ K+ R S +S + R +C +CL+ +RR C H +
Sbjct: 228 LQFNNLRQRQRARHEWKQHRNLLPSHQVSQSSSRTSRCILCLE---ERRNTTSTPCGHLF 284
Query: 60 CLECIEKWSNLKRNCPLCNAPFR 82
C ECI +W N K CPLC F+
Sbjct: 285 CWECITEWCNTKNECPLCREKFQ 307
>UNIPROTKB|F1NJF6 [details] [associations]
symbol:RNF122 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
OMA:PIAGPPE GeneTree:ENSGT00700000104226 EMBL:AADN02054910
IPI:IPI00580705 Ensembl:ENSGALT00000002505 Uniprot:F1NJF6
Length = 148
Score = 108 (43.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
+ GQ C +CL++ + + C HA+ +C+ KW ++ CP+CN P
Sbjct: 81 VHGQTCAVCLEDFKVKEELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKP 129
>UNIPROTKB|I3LDC9 [details] [associations]
symbol:RNF141 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 GeneTree:ENSGT00390000003145
OMA:MWMGRVK EMBL:FP312948 Ensembl:ENSSSCT00000022900 Uniprot:I3LDC9
Length = 231
Score = 123 (48.4 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D D ++ CTH++C +CI+KWS+ RNCP+C
Sbjct: 154 EECCICMDGRAD----LILPCTHSFCQKCIDKWSDRHRNCPIC 192
>RGD|1561238 [details] [associations]
symbol:RGD1561238 "similar to ring finger protein 122 homolog"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 RGD:1561238 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00700000104226
IPI:IPI00394572 Ensembl:ENSRNOT00000031701 Uniprot:F1LZF5
Length = 95
Score = 105 (42.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
GQ C +CL++ + + C HA+ +C+ KW ++ CP+CN P
Sbjct: 30 GQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKP 76
>TAIR|locus:4515102991 [details] [associations]
symbol:AT2G44581 "AT2G44581" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 EMBL:AC003672
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:NOG329235
HOGENOM:HOG000015208 ProtClustDB:CLSN2681377 IPI:IPI00891754
RefSeq:NP_001118526.1 UniGene:At.73710 ProteinModelPortal:B3H6J7
SMR:B3H6J7 EnsemblPlants:AT2G44581.1 GeneID:6241397
KEGG:ath:AT2G44581 TAIR:At2g44581 OMA:ATEGEKM PhylomeDB:B3H6J7
Genevestigator:B3H6J7 Uniprot:B3H6J7
Length = 145
Score = 105 (42.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 37 CPICLDNLTD-RRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
C ICL+N T+ + + C+H + ++CI+ W K CPLC A
Sbjct: 70 CTICLENATEGEKMRRIAACSHCFHVDCIDPWLEKKSMCPLCRA 113
>TAIR|locus:2034934 [details] [associations]
symbol:AT1G18770 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC011809
eggNOG:NOG268870 IPI:IPI00542029 RefSeq:NP_173312.1
UniGene:At.51668 ProteinModelPortal:Q3ED97 SMR:Q3ED97
EnsemblPlants:AT1G18770.1 GeneID:838459 KEGG:ath:AT1G18770
TAIR:At1g18770 HOGENOM:HOG000131773 InParanoid:Q3ED97 OMA:NAKIDGY
PhylomeDB:Q3ED97 ProtClustDB:CLSN2914190 Genevestigator:Q3ED97
Uniprot:Q3ED97
Length = 106
Score = 102 (41.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
G+ C ICL+ ++ R V C H + EC+ KW +CPLC
Sbjct: 56 GEMCIICLEEFSEGRRVVTLPCGHDFDDECVLKWFETNHSCPLC 99
>TAIR|locus:2195871 [details] [associations]
symbol:AT1G51930 species:3702 "Arabidopsis thaliana"
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:BT015124 EMBL:BT015636
IPI:IPI00533509 RefSeq:NP_175605.1 UniGene:At.64866
ProteinModelPortal:Q6AWX4 SMR:Q6AWX4 EnsemblPlants:AT1G51930.1
GeneID:841621 KEGG:ath:AT1G51930 TAIR:At1g51930 eggNOG:NOG294426
HOGENOM:HOG000141530 InParanoid:Q6AWX4 OMA:EEYEDDH PhylomeDB:Q6AWX4
ProtClustDB:CLSN2914693 Genevestigator:Q6AWX4 Uniprot:Q6AWX4
Length = 132
Score = 102 (41.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 37 CPICLDNLTD-RRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
CPICL+ D + L+ C H + L CI+ W K+NCP C
Sbjct: 80 CPICLEEYEDDHQIRRLRNCGHVFHLLCIDSWLTQKQNCPSC 121
>UNIPROTKB|Q32L15 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:BC109813 IPI:IPI00760467
RefSeq:NP_001035656.1 UniGene:Bt.107371 ProteinModelPortal:Q32L15
SMR:Q32L15 PRIDE:Q32L15 Ensembl:ENSBTAT00000021020 GeneID:539455
KEGG:bta:539455 CTD:50862 eggNOG:NOG273394
GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 InParanoid:Q32L15 OMA:MWMGRVK OrthoDB:EOG4GHZQ3
NextBio:20877998 Uniprot:Q32L15
Length = 230
Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D D ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPIC 191
>UNIPROTKB|F1Q4F0 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0006355 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
GeneTree:ENSGT00390000003145 OMA:MWMGRVK EMBL:AAEX03012903
ProteinModelPortal:F1Q4F0 Ensembl:ENSCAFT00000039375 Uniprot:F1Q4F0
Length = 230
Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D D ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPIC 191
>UNIPROTKB|Q8WVD5 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
EMBL:CH471064 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 CTD:50862 eggNOG:NOG273394 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OMA:MWMGRVK OrthoDB:EOG4GHZQ3 EMBL:AF214680
EMBL:AK289764 EMBL:BC018104 EMBL:BT006662 IPI:IPI00152564
RefSeq:NP_057506.2 UniGene:Hs.44685 UniGene:Hs.712894 PDB:2ECN
PDBsum:2ECN ProteinModelPortal:Q8WVD5 SMR:Q8WVD5 IntAct:Q8WVD5
STRING:Q8WVD5 PhosphoSite:Q8WVD5 DMDM:74751546 PRIDE:Q8WVD5
DNASU:50862 Ensembl:ENST00000265981 GeneID:50862 KEGG:hsa:50862
UCSC:uc001mis.1 GeneCards:GC11M010533 HGNC:HGNC:21159 HPA:HPA018133
neXtProt:NX_Q8WVD5 PharmGKB:PA134981805 InParanoid:Q8WVD5
PhylomeDB:Q8WVD5 ChiTaRS:RNF141 EvolutionaryTrace:Q8WVD5
GenomeRNAi:50862 NextBio:53366 ArrayExpress:Q8WVD5 Bgee:Q8WVD5
CleanEx:HS_RNF141 CleanEx:HS_ZNF230 Genevestigator:Q8WVD5
GermOnline:ENSG00000110315 Uniprot:Q8WVD5
Length = 230
Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D D ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPIC 191
>MGI|MGI:1914400 [details] [associations]
symbol:Rnf141 "ring finger protein 141" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IDA] [GO:0005575
"cellular_component" evidence=ND] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 MGI:MGI:1914400 Prosite:PS00518 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 CTD:50862 eggNOG:NOG273394
GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OMA:MWMGRVK EMBL:AF353167 EMBL:AK006791
EMBL:AK011839 EMBL:AK015505 EMBL:BC018553 IPI:IPI00874421
RefSeq:NP_080275.2 UniGene:Mm.96867 ProteinModelPortal:Q99MB7
SMR:Q99MB7 STRING:Q99MB7 PhosphoSite:Q99MB7 PaxDb:Q99MB7
PRIDE:Q99MB7 Ensembl:ENSMUST00000106682 Ensembl:ENSMUST00000177236
GeneID:67150 KEGG:mmu:67150 UCSC:uc009jfp.1 NextBio:323730
Bgee:Q99MB7 CleanEx:MM_RNF141 Genevestigator:Q99MB7
GermOnline:ENSMUSG00000030788 Uniprot:Q99MB7
Length = 230
Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D D ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPIC 191
>RGD|1303154 [details] [associations]
symbol:rnf141 "ring finger protein 141" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 RGD:1303154
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 CTD:50862 eggNOG:NOG273394
GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OrthoDB:EOG4GHZQ3 EMBL:AY621087 IPI:IPI00192051
RefSeq:NP_001001800.1 UniGene:Rn.127990 ProteinModelPortal:Q6IV57
SMR:Q6IV57 PhosphoSite:Q6IV57 PRIDE:Q6IV57
Ensembl:ENSRNOT00000024561 GeneID:308900 KEGG:rno:308900
UCSC:RGD:1303154 NextBio:659756 ArrayExpress:Q6IV57
Genevestigator:Q6IV57 GermOnline:ENSRNOG00000017900 Uniprot:Q6IV57
Length = 230
Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D D ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPIC 191
>UNIPROTKB|Q6IV57 [details] [associations]
symbol:Rnf141 "RING finger protein 141" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:1303154 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 CTD:50862
eggNOG:NOG273394 GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OrthoDB:EOG4GHZQ3 EMBL:AY621087 IPI:IPI00192051
RefSeq:NP_001001800.1 UniGene:Rn.127990 ProteinModelPortal:Q6IV57
SMR:Q6IV57 PhosphoSite:Q6IV57 PRIDE:Q6IV57
Ensembl:ENSRNOT00000024561 GeneID:308900 KEGG:rno:308900
UCSC:RGD:1303154 NextBio:659756 ArrayExpress:Q6IV57
Genevestigator:Q6IV57 GermOnline:ENSRNOG00000017900 Uniprot:Q6IV57
Length = 230
Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D D ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPIC 191
>UNIPROTKB|I3L768 [details] [associations]
symbol:LOC100624129 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0016558 "protein import into peroxisome matrix"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005779 "integral to peroxisomal membrane" evidence=IEA]
InterPro:IPR001841 InterPro:IPR025654 PROSITE:PS50089 SMART:SM00184
InterPro:IPR006845 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0005779 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016558
InterPro:IPR017907 PANTHER:PTHR23350 Pfam:PF04757
GeneTree:ENSGT00510000048446 OMA:AGWASKK EMBL:FP565908
RefSeq:XP_003356175.1 Ensembl:ENSSSCT00000032291 GeneID:100624129
KEGG:ssc:100624129 Uniprot:I3L768
Length = 326
Score = 121 (47.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 27/75 (36%), Positives = 36/75 (48%)
Query: 8 KSSYHMKREKREREKFVS-RVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEK 66
+ + + R R V RV+S A C +CL+ +RR A C H +C ECI
Sbjct: 246 RQEWKLHRGLSHRRSHVDERVVSTA---SLCTLCLE---ERRHATATPCGHLFCWECITH 299
Query: 67 WSNLKRNCPLCNAPF 81
WS+ K CPLC F
Sbjct: 300 WSDTKAECPLCREKF 314
>UNIPROTKB|I3LSN3 [details] [associations]
symbol:LOC100736805 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0016558 "protein import into peroxisome matrix"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005779 "integral to peroxisomal membrane" evidence=IEA]
InterPro:IPR001841 InterPro:IPR025654 PROSITE:PS50089 SMART:SM00184
InterPro:IPR006845 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0005779 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016558
InterPro:IPR017907 KO:K13346 OMA:FRQRQRA PANTHER:PTHR23350
Pfam:PF04757 GeneTree:ENSGT00510000048446 EMBL:FP565395
RefSeq:XP_003481979.1 Ensembl:ENSSSCT00000027142 GeneID:100736805
KEGG:ssc:100736805 Uniprot:I3LSN3
Length = 326
Score = 121 (47.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 27/75 (36%), Positives = 36/75 (48%)
Query: 8 KSSYHMKREKREREKFVS-RVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEK 66
+ + + R R V RV+S A C +CL+ +RR A C H +C ECI
Sbjct: 246 RQEWKLHRGLSHRRSHVDERVVSTA---SLCTLCLE---ERRHATATPCGHLFCWECITH 299
Query: 67 WSNLKRNCPLCNAPF 81
WS+ K CPLC F
Sbjct: 300 WSDTKAECPLCREKF 314
>UNIPROTKB|Q2XNS1 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 CTD:50862 eggNOG:NOG273394
HOGENOM:HOG000247058 HOVERGEN:HBG055763 OrthoDB:EOG4GHZQ3
EMBL:DQ273566 RefSeq:NP_001041484.1 UniGene:Cfa.10740
ProteinModelPortal:Q2XNS1 SMR:Q2XNS1 GeneID:476852 KEGG:cfa:476852
InParanoid:Q2XNS1 NextBio:20852447 Uniprot:Q2XNS1
Length = 231
Score = 118 (46.6 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D D ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 154 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPIC 192
>ZFIN|ZDB-GENE-040625-71 [details] [associations]
symbol:rnf141 "ring finger protein 141" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
ZFIN:ZDB-GENE-040625-71 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 CTD:50862
eggNOG:NOG273394 HOGENOM:HOG000247058 HOVERGEN:HBG055763
OrthoDB:EOG4GHZQ3 EMBL:AY621088 EMBL:BC071534 IPI:IPI00613818
RefSeq:NP_001007291.1 UniGene:Dr.77741 ProteinModelPortal:Q6IV56
SMR:Q6IV56 GeneID:414846 KEGG:dre:414846 InParanoid:Q6IV56
NextBio:20818742 Uniprot:Q6IV56
Length = 222
Score = 117 (46.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D D ++ C H++C +CI+KWS RNCP+C
Sbjct: 145 EECCICMDGKAD----LILPCAHSFCQKCIDKWSGQSRNCPVC 183
>FB|FBgn0037384 [details] [associations]
symbol:dgrn "degringolade" species:7227 "Drosophila
melanogaster" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0016567 "protein
ubiquitination" evidence=IDA] [GO:0001103 "RNA polymerase II
repressing transcription factor binding" evidence=IPI] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0033768 "SUMO-targeted ubiquitin ligase
complex" evidence=IC] [GO:0070201 "regulation of establishment of
protein localization" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0043393 "regulation of protein binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007530 "sex
determination" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IGI]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 EMBL:AE014297 GO:GO:0005737 GO:GO:0045893
GO:GO:0022008 GO:GO:0046872 GO:GO:0008270 GO:GO:0043393
GO:GO:0009790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
InterPro:IPR017907 HSSP:P38398 GO:GO:0007530 GO:GO:0070201
GO:GO:0033768 GeneTree:ENSGT00390000010318 UniGene:Dm.1077
GeneID:40725 KEGG:dme:Dmel_CG10981 CTD:40725 FlyBase:FBgn0037384
GenomeRNAi:40725 NextBio:820277 EMBL:AY060824 RefSeq:NP_649596.1
SMR:Q9VNJ0 IntAct:Q9VNJ0 MINT:MINT-766055 STRING:Q9VNJ0
EnsemblMetazoa:FBtr0078638 UCSC:CG10981-RA InParanoid:Q9VNJ0
OMA:IRATHKC Uniprot:Q9VNJ0
Length = 319
Score = 120 (47.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 22 KFVSRVISPAIRGQ--KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
K V+R I + + + KCPIC+D+++ R K C H +C ECIE CP+CN
Sbjct: 249 KRVNRDIDESQKEELYKCPICMDSVSKREPVSTK-CGHVFCRECIETAIRATHKCPICNK 307
Query: 80 PFRS-WFYRI 88
+ F+RI
Sbjct: 308 KLTARQFFRI 317
>TAIR|locus:2142449 [details] [associations]
symbol:RING1 species:3702 "Arabidopsis thaliana"
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA;ISS] [GO:0010200 "response to chitin"
evidence=IEP] [GO:0002238 "response to molecule of fungal origin"
evidence=IEP] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0009617 "response to bacterium" evidence=IEP;RCA] [GO:0012501
"programmed cell death" evidence=IC] [GO:0016567 "protein
ubiquitination" evidence=IDA] [GO:0043068 "positive regulation of
programmed cell death" evidence=IMP] [GO:0051865 "protein
autoubiquitination" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009627 "systemic acquired resistance"
evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
acid mediated signaling pathway" evidence=RCA] [GO:0009867
"jasmonic acid mediated signaling pathway" evidence=RCA]
[GO:0010310 "regulation of hydrogen peroxide metabolic process"
evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
response" evidence=RCA] [GO:0019761 "glucosinolate biosynthetic
process" evidence=RCA] [GO:0031348 "negative regulation of defense
response" evidence=RCA] [GO:0034976 "response to endoplasmic
reticulum stress" evidence=RCA] [GO:0035304 "regulation of protein
dephosphorylation" evidence=RCA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0016021 GO:GO:0005886 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006915 GO:GO:0009617 GO:GO:0006952 GO:GO:0046872
GO:GO:0008270 GO:GO:0010200 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AL353995 eggNOG:COG5540 GO:GO:0004842 GO:GO:0051865
EMBL:AK176500 IPI:IPI00537935 PIR:T50001 RefSeq:NP_196600.1
UniGene:At.1824 ProteinModelPortal:Q9LX93 SMR:Q9LX93 STRING:Q9LX93
EnsemblPlants:AT5G10380.1 GeneID:830902 KEGG:ath:AT5G10380
TAIR:At5g10380 HOGENOM:HOG000034176 InParanoid:Q9LX93 OMA:LHRSAIN
PhylomeDB:Q9LX93 ProtClustDB:CLSN2914912 Genevestigator:Q9LX93
GermOnline:AT5G10380 GO:GO:0043068 GO:GO:0012501 GO:GO:0002238
Uniprot:Q9LX93
Length = 301
Score = 119 (46.9 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 32 IRGQKCPICLDNLT-DRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
I G +C +CL+ D +L C+HA+ L CI+ W +NCPLC AP
Sbjct: 130 IDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAP 179
>UNIPROTKB|Q9H9V4 [details] [associations]
symbol:RNF122 "RING finger protein 122" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0005783 GO:GO:0016021
GO:GO:0005794 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 eggNOG:COG5540 EMBL:AK022588 EMBL:BC093884
EMBL:BC101573 IPI:IPI00015624 RefSeq:NP_079063.2 UniGene:Hs.151237
ProteinModelPortal:Q9H9V4 SMR:Q9H9V4 IntAct:Q9H9V4 STRING:Q9H9V4
PhosphoSite:Q9H9V4 DMDM:110816410 PRIDE:Q9H9V4
Ensembl:ENST00000256257 GeneID:79845 KEGG:hsa:79845 UCSC:uc003xjo.1
CTD:79845 GeneCards:GC08M033405 HGNC:HGNC:21147 HPA:HPA003888
neXtProt:NX_Q9H9V4 PharmGKB:PA134892945 HOGENOM:HOG000004806
HOVERGEN:HBG058899 InParanoid:Q9H9V4 KO:K15699 OMA:PIAGPPE
OrthoDB:EOG480HXV PhylomeDB:Q9H9V4 ChiTaRS:RNF122 GenomeRNAi:79845
NextBio:69538 Bgee:Q9H9V4 CleanEx:HS_RNF122 Genevestigator:Q9H9V4
GermOnline:ENSG00000133874 Uniprot:Q9H9V4
Length = 155
Score = 108 (43.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83
GQ C +CL++ + + C HA+ +C+ KW ++ CP+CN P S
Sbjct: 90 GQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAS 139
>TAIR|locus:2122348 [details] [associations]
symbol:AT4G09100 species:3702 "Arabidopsis thaliana"
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0016021 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AC005359 HOGENOM:HOG000237642 EMBL:AL161514 EMBL:DQ059117
EMBL:BT024815 IPI:IPI00531797 PIR:B85092 RefSeq:NP_192649.1
UniGene:At.54223 ProteinModelPortal:Q9M0R7 SMR:Q9M0R7
EnsemblPlants:AT4G09100.1 GeneID:826488 KEGG:ath:AT4G09100
TAIR:At4g09100 eggNOG:NOG246260 InParanoid:Q9M0R7 OMA:IGELECV
PhylomeDB:Q9M0R7 ProtClustDB:CLSN2915828 Genevestigator:Q9M0R7
GermOnline:AT4G09100 Uniprot:Q9M0R7
Length = 132
Score = 100 (40.3 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 25 SRVISPAIRGQKCPICLDNLTDRRTA-VLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
+R I P I +C +CL+ D T ++ C H + +C++ W + CP+C A
Sbjct: 73 ARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRA 128
>UNIPROTKB|Q99590 [details] [associations]
symbol:SCAF11 "Protein SCAF11" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IDA] [GO:0000245 "spliceosomal complex assembly"
evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 EMBL:CH471111 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GO:GO:0000245 CleanEx:HS_SIP1 eggNOG:NOG300312
EMBL:Y11251 EMBL:AF030234 EMBL:AC000015 EMBL:BC040951
IPI:IPI00181359 IPI:IPI00746412 PIR:T09073 RefSeq:NP_004710.2
UniGene:Hs.210367 ProteinModelPortal:Q99590 SMR:Q99590
IntAct:Q99590 MINT:MINT-2866162 STRING:Q99590 PhosphoSite:Q99590
DMDM:251757337 PaxDb:Q99590 PRIDE:Q99590 DNASU:9169
Ensembl:ENST00000369367 Ensembl:ENST00000419565
Ensembl:ENST00000465950 GeneID:9169 KEGG:hsa:9169 UCSC:uc001row.3
CTD:9169 GeneCards:GC12M046313 H-InvDB:HIX0010567 HGNC:HGNC:10784
HPA:HPA038862 MIM:603668 neXtProt:NX_Q99590 PharmGKB:PA35700
HOVERGEN:HBG101126 InParanoid:Q99590 OMA:ECDSFCS OrthoDB:EOG4G7BXK
ChiTaRS:SCAF11 GenomeRNAi:9169 NextBio:34387 PMAP-CutDB:Q99590
ArrayExpress:Q99590 Bgee:Q99590 CleanEx:HS_SFRS2IP
Genevestigator:Q99590 GermOnline:ENSG00000139218 Uniprot:Q99590
Length = 1463
Score = 126 (49.4 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 14 KREKREREKFVSRVISPAI---RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL 70
K E E E+ IS + +CPICL+ L ++ + C H +C+ CI KW+
Sbjct: 15 KYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWAET 74
Query: 71 KRNCPLCNAPFRSWF 85
+CP+ PF++ F
Sbjct: 75 LASCPIDRKPFQAVF 89
>UNIPROTKB|F1NHH0 [details] [associations]
symbol:RNF185 "E3 ubiquitin-protein ligase RNF185"
species:9031 "Gallus gallus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 GeneTree:ENSGT00390000014107
EMBL:AADN02043215 EMBL:AADN02043216 IPI:IPI00590225
Ensembl:ENSGALT00000011275 ArrayExpress:F1NHH0 Uniprot:F1NHH0
Length = 117
Score = 99 (39.9 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRN---CPLCNA 79
+C ICLD D AV+ +C H +C C+ +W + N CP+C A
Sbjct: 3 ECNICLDTAKD---AVISLCGHLFCWPCLHQWLETRPNRQVCPVCKA 46
>MGI|MGI:1261771 [details] [associations]
symbol:Rnf24 "ring finger protein 24" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 MGI:MGI:1261771
Prosite:PS00518 GO:GO:0016021 GO:GO:0000139 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
HOGENOM:HOG000004806 HOVERGEN:HBG058899
GeneTree:ENSGT00700000104226 CTD:11237 eggNOG:NOG299260 OMA:KQVIQKE
OrthoDB:EOG4VX26J EMBL:AK048813 EMBL:AK083665 EMBL:AK089207
IPI:IPI00221618 RefSeq:NP_848722.1 UniGene:Mm.477523
ProteinModelPortal:Q8BGI1 SMR:Q8BGI1 PhosphoSite:Q8BGI1
PRIDE:Q8BGI1 Ensembl:ENSMUST00000059372 Ensembl:ENSMUST00000110194
Ensembl:ENSMUST00000165420 GeneID:51902 KEGG:mmu:51902
InParanoid:Q8BGI1 NextBio:308218 Bgee:Q8BGI1 CleanEx:MM_RNF24
Genevestigator:Q8BGI1 GermOnline:ENSMUSG00000048911 Uniprot:Q8BGI1
Length = 148
Score = 105 (42.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
C +CL++ R + C HA+ +C+ KW +++ CPLCN P
Sbjct: 78 CAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKVCPLCNMP 121
>RGD|1309384 [details] [associations]
symbol:Rnf24 "ring finger protein 24" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:1309384 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473949 OMA:KQVIQKE OrthoDB:EOG4VX26J
IPI:IPI00210207 UniGene:Rn.230520 SMR:D3ZVL8
Ensembl:ENSRNOT00000028869 UCSC:RGD:1309384 Uniprot:D3ZVL8
Length = 148
Score = 105 (42.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
C +CL++ R + C HA+ +C+ KW +++ CPLCN P
Sbjct: 78 CAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKVCPLCNMP 121
>RGD|1591776 [details] [associations]
symbol:Pex10 "peroxisomal biogenesis factor 10" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005777 "peroxisome" evidence=ISO] [GO:0005778 "peroxisomal
membrane" evidence=ISO;IDA] [GO:0005779 "integral to peroxisomal
membrane" evidence=IEA;ISO] [GO:0007031 "peroxisome organization"
evidence=ISO] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016558 "protein
import into peroxisome matrix" evidence=IEA;ISO] InterPro:IPR001841
InterPro:IPR025654 PROSITE:PS50089 SMART:SM00184 InterPro:IPR006845
RGD:1591776 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0005779 GO:GO:0005778 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0016558 InterPro:IPR017907 EMBL:CH473968 KO:K13346
PANTHER:PTHR23350 Pfam:PF04757 CTD:5192
GeneTree:ENSGT00510000048446 OrthoDB:EOG4TB4C1 IPI:IPI00359803
RefSeq:NP_001102875.1 UniGene:Rn.111 Ensembl:ENSRNOT00000036819
GeneID:680424 KEGG:rno:680424 NextBio:718678 Uniprot:D3ZC81
Length = 324
Score = 118 (46.6 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 3 ASSLRKSSYHMKREKREREKF-VSRVIS---PAIRGQ---KCPICLDNLTDRRTAVLKVC 55
A SL Y ++++R R+++ + R +S ++ + + P+C L +RR + C
Sbjct: 227 ALSLGLQLYSFRQKQRARKEWRLHRNLSHRRSSLEDRAVCRAPLCTLCLEERRHSTATPC 286
Query: 56 THAYCLECIEKWSNLKRNCPLCNAPF 81
H +C ECI +W N K CPLC F
Sbjct: 287 GHLFCWECITEWCNTKTECPLCREKF 312
>ZFIN|ZDB-GENE-080303-32 [details] [associations]
symbol:zgc:175214 "zgc:175214" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 ZFIN:ZDB-GENE-080303-32 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 HOGENOM:HOG000004806
HOVERGEN:HBG058899 eggNOG:NOG262552 GeneTree:ENSGT00700000104226
EMBL:CR812943 EMBL:BC159258 IPI:IPI00481280 RefSeq:NP_001108199.1
UniGene:Dr.40552 SMR:B0JZN6 Ensembl:ENSDART00000030435
Ensembl:ENSDART00000137357 GeneID:557610 KEGG:dre:557610
NextBio:20882066 Uniprot:B0JZN6
Length = 155
Score = 107 (42.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
++ GQ C +CL+ R + C+H + +C+ KW ++ CP+CN P
Sbjct: 84 SLLGQPCAVCLEEFKTRDELGVCPCSHTFHKKCLLKWLEIRSVCPMCNKP 133
>UNIPROTKB|E1BST1 [details] [associations]
symbol:PEX10 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005779 "integral to peroxisomal membrane"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0016558
"protein import into peroxisome matrix" evidence=IEA]
InterPro:IPR001841 InterPro:IPR025654 PROSITE:PS50089 SMART:SM00184
InterPro:IPR006845 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0005779 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016558
InterPro:IPR017907 KO:K13346 OMA:FRQRQRA PANTHER:PTHR23350
Pfam:PF04757 CTD:5192 GeneTree:ENSGT00510000048446
EMBL:AADN02040876 IPI:IPI00596417 RefSeq:NP_001185583.1
UniGene:Gga.7879 ProteinModelPortal:E1BST1
Ensembl:ENSGALT00000001855 GeneID:419396 KEGG:gga:419396
NextBio:20822455 Uniprot:E1BST1
Length = 327
Score = 118 (46.6 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
R +C +CL+ +RR A C H +C ECI +W N + CPLC F
Sbjct: 269 RQSRCTLCLE---ERRHATATPCGHLFCWECITEWCNTRTECPLCREKF 314
>UNIPROTKB|A8MTP4 [details] [associations]
symbol:SCAF11 "Protein SCAF11" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 Prosite:PS00518 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
EMBL:AC000015 HGNC:HGNC:10784 ChiTaRS:SCAF11 EMBL:AC084878
IPI:IPI00853340 ProteinModelPortal:A8MTP4 SMR:A8MTP4 STRING:A8MTP4
Ensembl:ENST00000395453 HOGENOM:HOG000015273 HOVERGEN:HBG100010
ArrayExpress:A8MTP4 Bgee:A8MTP4 Uniprot:A8MTP4
Length = 77
Score = 97 (39.2 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 14 KREKREREKFVSRVISPAI---RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWS 68
K E E E+ IS + +CPICL+ L ++ + C H +C+ CI KW+
Sbjct: 15 KYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWA 72
>UNIPROTKB|A8MUK0 [details] [associations]
symbol:SCAF11 "Protein SCAF11" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 Prosite:PS00518 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
EMBL:AC000015 HGNC:HGNC:10784 ChiTaRS:SCAF11 EMBL:AC084878
HOGENOM:HOG000015273 HOVERGEN:HBG100010 IPI:IPI00794542
ProteinModelPortal:A8MUK0 SMR:A8MUK0 STRING:A8MUK0 PRIDE:A8MUK0
Ensembl:ENST00000395454 UCSC:uc001roz.3 ArrayExpress:A8MUK0
Bgee:A8MUK0 Uniprot:A8MUK0
Length = 77
Score = 97 (39.2 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 14 KREKREREKFVSRVISPAI---RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWS 68
K E E E+ IS + +CPICL+ L ++ + C H +C+ CI KW+
Sbjct: 15 KYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWA 72
>UNIPROTKB|E9PN08 [details] [associations]
symbol:RNF5 "E3 ubiquitin-protein ligase RNF5" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 EMBL:BX284686 HGNC:HGNC:10068 IPI:IPI00514241
ProteinModelPortal:E9PN08 SMR:E9PN08 Ensembl:ENST00000472060
ArrayExpress:E9PN08 Bgee:E9PN08 Uniprot:E9PN08
Length = 91
Score = 97 (39.2 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK---RNCPLCNA 79
+C ICL+ R AV+ VC H YC C+ +W + + CP+C A
Sbjct: 26 ECNICLETA---REAVVSVCGHLYCWPCLHQWLETRPERQECPVCKA 69
>UNIPROTKB|Q32LD0 [details] [associations]
symbol:RNF24 "Ring finger protein 24" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
HOGENOM:HOG000004806 HOVERGEN:HBG058899
GeneTree:ENSGT00700000104226 CTD:11237 eggNOG:NOG299260 OMA:KQVIQKE
OrthoDB:EOG4VX26J EMBL:DAAA02036176 EMBL:DAAA02036174
EMBL:DAAA02036175 EMBL:BC109640 IPI:IPI00697150
RefSeq:NP_001070520.1 UniGene:Bt.50892 SMR:Q32LD0
Ensembl:ENSBTAT00000010416 GeneID:767991 KEGG:bta:767991
InParanoid:Q32LD0 NextBio:20918346 Uniprot:Q32LD0
Length = 148
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
C +CL++ R + C HA+ +C+ KW +++ CPLCN P
Sbjct: 78 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMP 121
>UNIPROTKB|E2R402 [details] [associations]
symbol:RNF24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00700000104226 CTD:11237 OMA:KQVIQKE
EMBL:AAEX03013826 RefSeq:XP_850078.1 ProteinModelPortal:E2R402
SMR:E2R402 PRIDE:E2R402 Ensembl:ENSCAFT00000009937 GeneID:607703
KEGG:cfa:607703 NextBio:20893409 Uniprot:E2R402
Length = 148
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
C +CL++ R + C HA+ +C+ KW +++ CPLCN P
Sbjct: 78 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMP 121
>UNIPROTKB|Q9Y225 [details] [associations]
symbol:RNF24 "RING finger protein 24" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0000139 "Golgi membrane"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0016021 GO:GO:0000139
GO:GO:0046872 GO:GO:0008270 EMBL:CH471133 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AL031670 HOGENOM:HOG000004806
HOVERGEN:HBG058899 EMBL:AL096778 EMBL:BT007406 EMBL:BC000213
EMBL:BC039584 EMBL:AL079313 IPI:IPI00797703 IPI:IPI00910656
RefSeq:NP_001127809.1 RefSeq:NP_001127810.1 RefSeq:NP_009150.1
UniGene:Hs.589884 PDB:2EP4 PDBsum:2EP4 ProteinModelPortal:Q9Y225
SMR:Q9Y225 STRING:Q9Y225 PhosphoSite:Q9Y225 DMDM:20139860
PaxDb:Q9Y225 PRIDE:Q9Y225 DNASU:11237 Ensembl:ENST00000336095
Ensembl:ENST00000358395 Ensembl:ENST00000432261
Ensembl:ENST00000545616 GeneID:11237 KEGG:hsa:11237 UCSC:uc002wkh.2
UCSC:uc002wki.2 CTD:11237 GeneCards:GC20M003912 HGNC:HGNC:13779
HPA:HPA011900 MIM:612489 neXtProt:NX_Q9Y225 PharmGKB:PA34428
eggNOG:NOG299260 InParanoid:Q9Y225 OMA:KQVIQKE OrthoDB:EOG4VX26J
PhylomeDB:Q9Y225 ChiTaRS:RNF24 EvolutionaryTrace:Q9Y225
GenomeRNAi:11237 NextBio:42770 Bgee:Q9Y225 CleanEx:HS_RNF24
Genevestigator:Q9Y225 GermOnline:ENSG00000101236 Uniprot:Q9Y225
Length = 148
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
C +CL++ R + C HA+ +C+ KW +++ CPLCN P
Sbjct: 78 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMP 121
>DICTYBASE|DDB_G0289719 [details] [associations]
symbol:DDB_G0289719 "SFRS2-interacting protein"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 dictyBase:DDB_G0289719 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 EMBL:AAFI02000148 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 RefSeq:XP_636078.1
ProteinModelPortal:Q54H40 EnsemblProtists:DDB0188541 GeneID:8627288
KEGG:ddi:DDB_G0289719 eggNOG:KOG4430 InParanoid:Q54H40 OMA:ERESEHA
Uniprot:Q54H40
Length = 1419
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 25/68 (36%), Positives = 36/68 (52%)
Query: 14 KREKREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRN 73
K+EK ERE+ + + +I C IC D + + + CTH +C ECI +WS
Sbjct: 834 KQEKEERER-KEKEENESI---DCIICTDTIKKEDISTICGCTHKFCFECILEWSKQTNT 889
Query: 74 CPLCNAPF 81
CPLC + F
Sbjct: 890 CPLCKSRF 897
>TAIR|locus:505006414 [details] [associations]
symbol:AT4G00305 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AL161471
IPI:IPI00543955 RefSeq:NP_567167.1 UniGene:At.54058
ProteinModelPortal:Q3EAE6 SMR:Q3EAE6 PaxDb:Q3EAE6 PRIDE:Q3EAE6
EnsemblPlants:AT4G00305.1 GeneID:827340 KEGG:ath:AT4G00305
TAIR:At4g00305 eggNOG:NOG278038 InParanoid:Q3EAE6 OMA:ESCRICQ
PhylomeDB:Q3EAE6 ProtClustDB:CLSN2917462 Genevestigator:Q3EAE6
Uniprot:Q3EAE6
Length = 126
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 24/68 (35%), Positives = 29/68 (42%)
Query: 21 EKFVSRVISPAIRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKW-SNLKRNCPLCN 78
E SRV P + C IC D L+ C H Y CI++W + K CPLC
Sbjct: 59 EDISSRVNPP----ESCRICQDEFDGGDEVRCLRNCVHVYHKTCIDRWIQDDKMTCPLCR 114
Query: 79 APFRSWFY 86
P FY
Sbjct: 115 TPIVPDFY 122
>UNIPROTKB|E2RKG5 [details] [associations]
symbol:SCAF11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0000245
"spliceosomal complex assembly" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GO:GO:0000245 GeneTree:ENSGT00530000063661
CTD:9169 OMA:ECDSFCS EMBL:AAEX03015115 EMBL:AAEX03015114
RefSeq:XP_534828.3 Ensembl:ENSCAFT00000014798 GeneID:477634
KEGG:cfa:477634 NextBio:20853078 Uniprot:E2RKG5
Length = 1459
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85
+CPICL+ L ++ + C H +C+ CI KW+ + +CP+ PF++ F
Sbjct: 40 RCPICLNCLLEKEVGFPESCNHVFCMTCILKWAEILASCPVDRKPFQAVF 89
>ZFIN|ZDB-GENE-040426-2324 [details] [associations]
symbol:rnft1 "ring finger protein, transmembrane
1" species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
ZFIN:ZDB-GENE-040426-2324 GO:GO:0016021 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 HSSP:P38398
EMBL:BC066378 IPI:IPI00498796 RefSeq:NP_998393.1 UniGene:Dr.80127
ProteinModelPortal:Q6NZ21 STRING:Q6NZ21 Ensembl:ENSDART00000022484
GeneID:406509 KEGG:dre:406509 CTD:51136 eggNOG:NOG329292
GeneTree:ENSGT00390000014213 HOGENOM:HOG000237544
HOVERGEN:HBG056546 InParanoid:Q6NZ21 OMA:LNPTLDH OrthoDB:EOG412M5F
NextBio:20818085 Bgee:Q6NZ21 Uniprot:Q6NZ21
Length = 419
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 27/52 (51%), Positives = 31/52 (59%)
Query: 29 SPA-IR--GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
SPA IR G CPIC + R VL VC H +C ECI +W N +R CPLC
Sbjct: 348 SPAQIREAGDICPICQADFKQPR--VL-VCQHIFCEECIAQWLNQERTCPLC 396
>TAIR|locus:505006547 [details] [associations]
symbol:AT4G33565 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0005886 EMBL:CP002687 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 IPI:IPI00524769
RefSeq:NP_567926.4 UniGene:At.31572 UniGene:At.75651
ProteinModelPortal:F4JJ02 SMR:F4JJ02 EnsemblPlants:AT4G33565.1
GeneID:829496 KEGG:ath:AT4G33565 OMA:WHIRTIG Uniprot:F4JJ02
Length = 367
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 32 IRGQKCPICLDNLTDRRTA-VLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
+ G C +CL + T +L C HA+ L CI+ W NCPLC AP
Sbjct: 212 VEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAP 261
>MGI|MGI:2684988 [details] [associations]
symbol:Pex10 "peroxisomal biogenesis factor 10"
species:10090 "Mus musculus" [GO:0005777 "peroxisome" evidence=ISO]
[GO:0005778 "peroxisomal membrane" evidence=ISO] [GO:0005779
"integral to peroxisomal membrane" evidence=ISO] [GO:0007031
"peroxisome organization" evidence=ISO] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016558
"protein import into peroxisome matrix" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR025654 PROSITE:PS50089 SMART:SM00184 InterPro:IPR006845
MGI:MGI:2684988 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0005779 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016558
EMBL:CH466594 InterPro:IPR017907 EMBL:AL670413 eggNOG:COG5574
KO:K13346 OMA:FRQRQRA PANTHER:PTHR23350 Pfam:PF04757 CTD:5192
HOGENOM:HOG000180194 HOVERGEN:HBG053568 EMBL:BC147304 EMBL:BC147305
IPI:IPI00676835 RefSeq:NP_001035866.1 UniGene:Mm.133114
ProteinModelPortal:B1AUE5 SMR:B1AUE5 STRING:B1AUE5 PaxDb:B1AUE5
PRIDE:B1AUE5 Ensembl:ENSMUST00000103180 GeneID:668173
KEGG:mmu:668173 UCSC:uc008wcs.1 GeneTree:ENSGT00510000048446
InParanoid:B1AUE5 OrthoDB:EOG4TB4C1 NextBio:434205 Bgee:B1AUE5
Genevestigator:B1AUE5 Uniprot:B1AUE5
Length = 324
Score = 115 (45.5 bits), Expect = 0.00014, P = 0.00014
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
+ P+C L +RR + C H +C ECI +W N K CPLC F
Sbjct: 267 RTPLCTLCLEERRHSTATPCGHLFCWECITEWCNTKTECPLCREKF 312
>UNIPROTKB|F1Q2J1 [details] [associations]
symbol:RNF122 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
OMA:PIAGPPE GeneTree:ENSGT00700000104226 EMBL:AAEX03010410
Ensembl:ENSCAFT00000010190 Uniprot:F1Q2J1
Length = 155
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
GQ C +CL++ + + C HA+ +C+ KW ++ CP+CN P
Sbjct: 90 GQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKP 136
>MGI|MGI:1916117 [details] [associations]
symbol:Rnf122 "ring finger protein 122" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 MGI:MGI:1916117
Prosite:PS00518 GO:GO:0005783 GO:GO:0016021 GO:GO:0005794
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
CTD:79845 HOGENOM:HOG000004806 HOVERGEN:HBG058899 KO:K15699
OrthoDB:EOG480HXV EMBL:AK077856 EMBL:AK085376 EMBL:AK171823
EMBL:AK136206 EMBL:BC038399 EMBL:BC050268 IPI:IPI00342402
RefSeq:NP_780345.1 UniGene:Mm.29532 UniGene:Mm.400167
ProteinModelPortal:Q8BP31 SMR:Q8BP31 PhosphoSite:Q8BP31
PRIDE:Q8BP31 Ensembl:ENSMUST00000046941 GeneID:68867 KEGG:mmu:68867
UCSC:uc009ljd.1 eggNOG:NOG262552 GeneTree:ENSGT00700000104226
InParanoid:Q8BP31 NextBio:328081 Bgee:Q8BP31 CleanEx:MM_RNF122
Genevestigator:Q8BP31 GermOnline:ENSMUSG00000039328 Uniprot:Q8BP31
Length = 155
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
GQ C +CL++ + + C HA+ +C+ KW ++ CP+CN P
Sbjct: 90 GQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKP 136
>ZFIN|ZDB-GENE-091204-454 [details] [associations]
symbol:si:ch1073-392o20.1 "si:ch1073-392o20.1"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
ZFIN:ZDB-GENE-091204-454 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 KO:K15699 OMA:PIAGPPE
GeneTree:ENSGT00700000104226 EMBL:CABZ01074899 EMBL:CABZ01074900
EMBL:CU855950 IPI:IPI00934891 RefSeq:XP_002663295.2
Ensembl:ENSDART00000092836 GeneID:100329730 KEGG:dre:100329730
Uniprot:E7FGJ5
Length = 155
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
+ GQ C +CL++ + + C HA+ C+ KW ++ CP+CN P
Sbjct: 88 LHGQTCAVCLEDFKVKDELGVLPCQHAFHRRCVVKWLEVRCVCPMCNKP 136
>TAIR|locus:2074678 [details] [associations]
symbol:AT3G11110 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0009741 "response to brassinosteroid
stimulus" evidence=RCA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AC009991 EMBL:AC073395 EMBL:BT031381 IPI:IPI00524656
RefSeq:NP_187722.1 UniGene:At.53265 ProteinModelPortal:Q9SRM0
SMR:Q9SRM0 EnsemblPlants:AT3G11110.1 GeneID:820282
KEGG:ath:AT3G11110 TAIR:At3g11110 eggNOG:NOG241452
HOGENOM:HOG000238431 InParanoid:Q9SRM0 OMA:EKECCIC PhylomeDB:Q9SRM0
ProtClustDB:CLSN2684057 Genevestigator:Q9SRM0 GermOnline:AT3G11110
Uniprot:Q9SRM0
Length = 158
Score = 105 (42.0 bits), Expect = 0.00018, P = 0.00018
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 35 QKCPICLDNLTD-RRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82
++C ICL + + VL C+H Y EC+++W + +CPLC R
Sbjct: 105 KECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIR 153
>TAIR|locus:2078092 [details] [associations]
symbol:AT3G05670 "AT3G05670" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 SMART:SM00184 SMART:SM00249 Prosite:PS00518
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR017907 EMBL:AC011620 HSSP:Q14839
eggNOG:NOG300312 EMBL:AY120751 EMBL:BT002568 IPI:IPI00528739
RefSeq:NP_187218.1 UniGene:At.18633 ProteinModelPortal:Q9M9X2
SMR:Q9M9X2 EnsemblPlants:AT3G05670.1 GeneID:819734
KEGG:ath:AT3G05670 TAIR:At3g05670 HOGENOM:HOG000093083
InParanoid:Q9M9X2 OMA:CKQRFRT ProtClustDB:CLSN2684496
Genevestigator:Q9M9X2 Uniprot:Q9M9X2
Length = 883
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 30/88 (34%), Positives = 44/88 (50%)
Query: 3 ASSLRKSSYHM------KREKREREKFVSRVISPAIRGQKCPICLDNLTDRRT-AVLKVC 55
ASS+R+++ + K ++ EK V V I+ C ICL RR L C
Sbjct: 374 ASSIRQTTVNKDLPQLRKSPVKKGEKKVELVKRDVIKNV-CGICLSEEDMRRLKGTLDCC 432
Query: 56 THAYCLECIEKWSNLKRNCPLCNAPFRS 83
+H +C CI +WS ++ CPLC FR+
Sbjct: 433 SHYFCFTCIMEWSKVESRCPLCKQRFRT 460
>UNIPROTKB|I3LS90 [details] [associations]
symbol:SCAF11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 GeneTree:ENSGT00530000063661
EMBL:CU694768 Ensembl:ENSSSCT00000023077 Uniprot:I3LS90
Length = 1426
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85
+CPICL L ++ + C H +CL CI KW+ +CP+ PF++ F
Sbjct: 43 RCPICLSCLLEKEIGFPESCNHVFCLTCILKWAETLASCPIDRKPFQAVF 92
>UNIPROTKB|I3LHN2 [details] [associations]
symbol:SCAF11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000245
"spliceosomal complex assembly" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 Pfam:PF13639
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GO:GO:0000245 GeneTree:ENSGT00530000063661
OMA:ECDSFCS EMBL:CU694768 Ensembl:ENSSSCT00000031177 Uniprot:I3LHN2
Length = 1456
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85
+CPICL L ++ + C H +CL CI KW+ +CP+ PF++ F
Sbjct: 40 RCPICLSCLLEKEIGFPESCNHVFCLTCILKWAETLASCPIDRKPFQAVF 89
>UNIPROTKB|E1BTQ2 [details] [associations]
symbol:RNF8 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] [GO:0016881 "acid-amino acid ligase activity"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR001841 InterPro:IPR017335 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 GeneTree:ENSGT00400000022349
PANTHER:PTHR15067:SF3 OMA:VEMKEHR EMBL:AADN02011899 IPI:IPI00820679
Ensembl:ENSGALT00000035395 Uniprot:E1BTQ2
Length = 136
Score = 98 (39.6 bits), Expect = 0.00022, P = 0.00022
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83
+C IC ++ + AV C H++C CI++W+ K CP+C +S
Sbjct: 10 QCTICSEHFIE---AVTLNCAHSFCSYCIDEWTKRKVECPICRQEIKS 54
>ZFIN|ZDB-GENE-040426-1024 [details] [associations]
symbol:rnf181 "ring finger protein 181"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 UniPathway:UPA00143
Prosite:PS00518 ZFIN:ZDB-GENE-040426-1024 GO:GO:0046872
GO:GO:0016874 GO:GO:0008270 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 HSSP:Q9LRB7 eggNOG:COG5540
GeneTree:ENSGT00530000062967 CTD:51255 HOGENOM:HOG000031081
HOVERGEN:HBG108412 OMA:EEQYRQN OrthoDB:EOG40VVQW EMBL:CU041374
EMBL:BC050161 IPI:IPI00492404 IPI:IPI00890554 RefSeq:NP_956600.1
UniGene:Dr.84789 ProteinModelPortal:Q7ZW78 STRING:Q7ZW78
Ensembl:ENSDART00000029450 Ensembl:ENSDART00000134728
Ensembl:ENSDART00000140392 GeneID:393276 KEGG:dre:393276
InParanoid:Q7ZW78 NextBio:20814333 Bgee:Q7ZW78 Uniprot:Q7ZW78
Length = 156
Score = 104 (41.7 bits), Expect = 0.00023, P = 0.00023
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 27 VISP--AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
+ISP A +G KCP+CL ++ + C H + CI W N +CPLC
Sbjct: 67 IISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLC 119
>DICTYBASE|DDB_G0282693 [details] [associations]
symbol:pex10 "peroxisome biogenesis factor 10"
species:44689 "Dictyostelium discoideum" [GO:0016558 "protein
import into peroxisome matrix" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0007031 "peroxisome organization"
evidence=IEA;ISS] [GO:0005779 "integral to peroxisomal membrane"
evidence=IEA] [GO:0005778 "peroxisomal membrane" evidence=IEA;ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0005777 "peroxisome" evidence=IEA] InterPro:IPR001841
InterPro:IPR025654 PROSITE:PS50089 SMART:SM00184 InterPro:IPR006845
dictyBase:DDB_G0282693 Prosite:PS00518 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0007031
GO:GO:0005779 GO:GO:0005778 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0016558 InterPro:IPR017907 eggNOG:COG5574 KO:K13346
OMA:FRQRQRA PANTHER:PTHR23350 Pfam:PF04757 RefSeq:XP_640208.2
ProteinModelPortal:Q54S31 EnsemblProtists:DDB0238052 GeneID:8623748
KEGG:ddi:DDB_G0282693 ProtClustDB:CLSZ2430477 Uniprot:Q54S31
Length = 374
Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
QKC +CL+ T TA +C H +C CI +W N K CP+C P
Sbjct: 320 QKCTLCLEVRT-HTTAT--ICGHLFCWHCITEWCNNKEQCPVCRCP 362
>UNIPROTKB|Q5ZM74 [details] [associations]
symbol:RNF141 "RING finger protein 141" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 CTD:50862 eggNOG:NOG273394
GeneTree:ENSGT00390000003145 HOGENOM:HOG000247058
HOVERGEN:HBG055763 OMA:MWMGRVK OrthoDB:EOG4GHZQ3 EMBL:AJ719510
IPI:IPI00597758 RefSeq:NP_001007926.1 UniGene:Gga.7687
ProteinModelPortal:Q5ZM74 SMR:Q5ZM74 Ensembl:ENSGALT00000009054
GeneID:423039 KEGG:gga:423039 InParanoid:Q5ZM74 NextBio:20825570
Uniprot:Q5ZM74
Length = 230
Score = 110 (43.8 bits), Expect = 0.00025, P = 0.00025
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
+C IC+D D ++ C H++C +CI+KWS+ R+CP+C
Sbjct: 154 ECCICMDGRVD----LILPCAHSFCQKCIDKWSDRHRSCPVC 191
>RGD|1598325 [details] [associations]
symbol:Scaf11 "SR-related CTD-associated factor 11"
species:10116 "Rattus norvegicus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 RGD:1598325 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 IPI:IPI00392552 Ensembl:ENSRNOT00000034989
UCSC:RGD:1598325 ArrayExpress:F1M4Q2 Uniprot:F1M4Q2
Length = 1392
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85
+CPICL L + + C H +C+ CI KW+ + +CP+ PF++ F
Sbjct: 47 RCPICLSCLLGKEVGFPESCNHVFCMACILKWAEILASCPIDRKPFQAVF 96
>SGD|S000005493 [details] [associations]
symbol:HRT1 "RING finger containing subunit of SCF ubiquitin
protein ligase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein
catabolic process" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0019005 "SCF ubiquitin ligase complex"
evidence=IDA;IPI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS;IDA;IPI]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IMP;IDA] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=IGI;IMP] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0000086 "G2/M transition of
mitotic cell cycle" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
UniPathway:UPA00143 SGD:S000005493 GO:GO:0005634 GO:GO:0005737
GO:GO:0000086 EMBL:BK006948 GO:GO:0046872 GO:GO:0000082 EMBL:X95465
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0019005
eggNOG:COG5194 HOGENOM:HOG000171951 InterPro:IPR024766 Pfam:PF12678
GO:GO:0042787 GO:GO:0031146 GeneTree:ENSGT00390000017058 KO:K03868
OMA:NRDWEFQ OrthoDB:EOG4V46J5 EMBL:Z74876 PIR:S66830
RefSeq:NP_014508.1 ProteinModelPortal:Q08273 SMR:Q08273
DIP:DIP-1373N IntAct:Q08273 MINT:MINT-401535 STRING:Q08273
PaxDb:Q08273 PeptideAtlas:Q08273 EnsemblFungi:YOL133W GeneID:853986
KEGG:sce:YOL133W CYGD:YOL133w NextBio:975461 Genevestigator:Q08273
GermOnline:YOL133W Uniprot:Q08273
Length = 121
Score = 93 (37.8 bits), Expect = 0.00027, P = 0.00027
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 25 SRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82
+ ++ P I Q P + + + A VC HA+ L CI KW + CPL N P++
Sbjct: 60 NHIMEPCIECQ--PKAMTDTDNECVAAWGVCNHAFHLHCINKWIKTRDACPLDNQPWQ 115
>RGD|2319802 [details] [associations]
symbol:LOC100365068 "rCG50794-like" species:10116 "Rattus
norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
RGD:2319802 Prosite:PS00518 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GO:GO:0000245 GeneTree:ENSGT00530000063661
OrthoDB:EOG4G7BXK IPI:IPI00959123 Ensembl:ENSRNOT00000007003
ArrayExpress:D4ABH1 Uniprot:D4ABH1
Length = 1407
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85
+CPICL L + + C H +C+ CI KW+ + +CP+ PF++ F
Sbjct: 40 RCPICLSCLLGKEVGFPESCNHVFCMACILKWAEILASCPIDRKPFQAVF 89
>UNIPROTKB|E1B8N1 [details] [associations]
symbol:LOC521092 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GeneTree:ENSGT00700000104290 EMBL:DAAA02073830 IPI:IPI00696540
Ensembl:ENSBTAT00000026322 OMA:PICITEY Uniprot:E1B8N1
Length = 621
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRIN 89
CPIC+ T + C+H Y +CI++W NCP+C AP +F N
Sbjct: 567 CPICITEYTTGNMLRILPCSHEYHYQCIDQWLEEHPNCPICRAPVVDYFEAYN 619
>ZFIN|ZDB-GENE-041114-40 [details] [associations]
symbol:rnf24 "ring finger protein 24" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 ZFIN:ZDB-GENE-041114-40
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
HOGENOM:HOG000004806 HOVERGEN:HBG058899
GeneTree:ENSGT00700000104226 CTD:11237 OMA:KQVIQKE EMBL:BX004888
EMBL:BC085525 IPI:IPI00506880 RefSeq:NP_001007353.1
UniGene:Dr.88655 SMR:Q5U3J0 Ensembl:ENSDART00000053681
GeneID:492480 KEGG:dre:492480 InParanoid:Q5U3J0 NextBio:20865041
Uniprot:Q5U3J0
Length = 149
Score = 101 (40.6 bits), Expect = 0.00041, P = 0.00041
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
C +CL+ + + C HA+ +C+ KW +++ CPLCN P
Sbjct: 78 CAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMP 121
>UNIPROTKB|E2R2P8 [details] [associations]
symbol:PEX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016558 "protein import into peroxisome
matrix" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005779 "integral to peroxisomal membrane" evidence=IEA]
InterPro:IPR001841 InterPro:IPR025654 PROSITE:PS50089 SMART:SM00184
InterPro:IPR006845 Prosite:PS00518 GO:GO:0008270 GO:GO:0005779
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0016558
InterPro:IPR017907 PANTHER:PTHR23350 Pfam:PF04757
ProteinModelPortal:E2R2P8 Ensembl:ENSCAFT00000030837
NextBio:20862768 Uniprot:E2R2P8
Length = 326
Score = 111 (44.1 bits), Expect = 0.00042, P = 0.00042
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
R C +CL+ +RR + C H +C ECI +W + K CPLC F
Sbjct: 269 RNSVCTLCLE---ERRHSTATPCGHLFCWECITQWCDTKTECPLCREKF 314
>UNIPROTKB|C9J1C6 [details] [associations]
symbol:RNF181 "E3 ubiquitin-protein ligase RNF181"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AC016753 HOGENOM:HOG000031081
OrthoDB:EOG40VVQW HGNC:HGNC:28037 IPI:IPI00926363
ProteinModelPortal:C9J1C6 SMR:C9J1C6 STRING:C9J1C6
Ensembl:ENST00000441634 ArrayExpress:C9J1C6 Bgee:C9J1C6
Uniprot:C9J1C6
Length = 139
Score = 98 (39.6 bits), Expect = 0.00044, P = 0.00044
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
KCP+CL + TA+ C H + CI W + +CPLC
Sbjct: 75 KCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLC 116
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 116 (45.9 bits), Expect = 0.00055, P = 0.00055
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 8 KSSYHMKREKRE--REKFVSRVISPAIRGQK--CPICLDNLTDRRTAVLKVCTHAYCLEC 63
KSS ++RE ++ E FV V+ +G++ CPICL+ L D AVL C H C EC
Sbjct: 762 KSS-GLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALED---AVLTPCAHRLCREC 817
Query: 64 I-EKWSNLKRN-CPLC 77
+ W N CP+C
Sbjct: 818 LLASWRNSTSGLCPVC 833
>UNIPROTKB|F1NDX0 [details] [associations]
symbol:LOC100859635 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GeneTree:ENSGT00440000035370 EMBL:AADN02016908
IPI:IPI00681507 Ensembl:ENSGALT00000032949 ArrayExpress:F1NDX0
Uniprot:F1NDX0
Length = 742
Score = 114 (45.2 bits), Expect = 0.00064, P = 0.00064
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
CPIC++ + D+ +L C H +C CI+K K+ CP+CN +
Sbjct: 563 CPICMEKIVDKE--ILTKCKHVFCKSCIKKALEYKQTCPVCNTVY 605
>UNIPROTKB|F1NFB8 [details] [associations]
symbol:LOC100859635 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008270
GO:GO:0006974 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
InterPro:IPR017907 GO:GO:0010390 GeneTree:ENSGT00440000035370
OMA:GIQKGNQ EMBL:AADN02016908 IPI:IPI00577596
Ensembl:ENSGALT00000019727 ArrayExpress:F1NFB8 Uniprot:F1NFB8
Length = 743
Score = 114 (45.2 bits), Expect = 0.00064, P = 0.00064
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
CPIC++ + D+ +L C H +C CI+K K+ CP+CN +
Sbjct: 564 CPICMEKIVDKE--ILTKCKHVFCKSCIKKALEYKQTCPVCNTVY 606
>TAIR|locus:2181032 [details] [associations]
symbol:DAFL2 "DAF-Like gene 2" species:3702 "Arabidopsis
thaliana" [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0016021 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5540
HOGENOM:HOG000237642 EMBL:AL162351 EMBL:BT010682 EMBL:BT010973
IPI:IPI00526186 PIR:T48209 RefSeq:NP_195808.1 UniGene:At.33488
UniGene:At.70718 ProteinModelPortal:Q9LZV8 SMR:Q9LZV8
EnsemblPlants:AT5G01880.1 GeneID:831691 KEGG:ath:AT5G01880
TAIR:At5g01880 InParanoid:Q9LZV8 OMA:ATECAIC PhylomeDB:Q9LZV8
ProtClustDB:CLSN2916663 Genevestigator:Q9LZV8 GermOnline:AT5G01880
Uniprot:Q9LZV8
Length = 159
Score = 101 (40.6 bits), Expect = 0.00074, P = 0.00074
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 16 EKREREKF-VSRVISPAIR--GQKCPICLDNLTD-RRTAVLKVCTHAYCLECIEKWSNLK 71
+KRE +KF V+ S ++ +C ICL D R VL C H++ + CI+ W
Sbjct: 81 KKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSH 140
Query: 72 RNCPLC 77
+CP C
Sbjct: 141 SSCPNC 146
>UNIPROTKB|J3QRK3 [details] [associations]
symbol:TRIM37 "E3 ubiquitin-protein ligase TRIM37"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AC099850 EMBL:AC100832 HGNC:HGNC:7523 ChiTaRS:TRIM37
EMBL:AC005207 EMBL:AC036154 ProteinModelPortal:J3QRK3
Ensembl:ENST00000584889 Uniprot:J3QRK3
Length = 103
Score = 89 (36.4 bits), Expect = 0.00076, P = 0.00076
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKR-NCPLCNAPFR 82
+C IC++ L D R + C+ C CI +W +R CP C AP +
Sbjct: 14 RCFICMEKLRDAR--LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 59
>UNIPROTKB|J3QSH5 [details] [associations]
symbol:TRIM37 "E3 ubiquitin-protein ligase TRIM37"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
EMBL:AC099850 EMBL:AC100832 HGNC:HGNC:7523 ChiTaRS:TRIM37
EMBL:AC005207 EMBL:AC036154 Ensembl:ENST00000580122 Uniprot:J3QSH5
Length = 113
Score = 89 (36.4 bits), Expect = 0.00076, P = 0.00076
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKR-NCPLCNAPFR 82
+C IC++ L D R + C+ C CI +W +R CP C AP +
Sbjct: 14 RCFICMEKLRDAR--LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 59
>TAIR|locus:2207066 [details] [associations]
symbol:AT1G72220 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518 GO:GO:0016021
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5540
EMBL:AC067754 EMBL:AY052232 EMBL:BT002303 EMBL:AY084564
IPI:IPI00537254 PIR:G96745 RefSeq:NP_177367.1 UniGene:At.26428
ProteinModelPortal:Q8LFY8 SMR:Q8LFY8 EnsemblPlants:AT1G72220.1
GeneID:843554 KEGG:ath:AT1G72220 TAIR:At1g72220
HOGENOM:HOG000034163 InParanoid:Q8LFY8 OMA:INSITIC PhylomeDB:Q8LFY8
ProtClustDB:CLSN2912699 Genevestigator:Q8LFY8 GermOnline:AT1G72220
Uniprot:Q8LFY8
Length = 413
Score = 110 (43.8 bits), Expect = 0.00082, P = 0.00082
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 37 CPICLDNLT-DRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
CP+CL+ D +L C HA+ + CI+ W + NCPLC A
Sbjct: 177 CPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRA 220
>ZFIN|ZDB-GENE-041210-22 [details] [associations]
symbol:scaf11 "SR-related CTD-associated factor 11"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
ZFIN:ZDB-GENE-041210-22 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
GeneTree:ENSGT00530000063661 EMBL:AL929171 IPI:IPI01024158
Ensembl:ENSDART00000148486 ArrayExpress:F8W5M3 Bgee:F8W5M3
Uniprot:F8W5M3
Length = 1145
Score = 115 (45.5 bits), Expect = 0.00083, P = 0.00083
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
Q+CPICL+ AV C H YC CI +W+ + ++CP+ PF
Sbjct: 22 QRCPICLNRPRRSDRAVPDCCRHVYCSACILRWAQMVQSCPVDRRPF 68
>ZFIN|ZDB-GENE-030131-6607 [details] [associations]
symbol:rnf40 "ring finger protein 40" species:7955
"Danio rerio" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 PROSITE:PS50089 SMART:SM00184 Pfam:PF00097
Prosite:PS00518 ZFIN:ZDB-GENE-030131-6607 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GeneTree:ENSGT00390000002866 EMBL:AL732488
EMBL:CT030027 IPI:IPI00615866 Ensembl:ENSDART00000145221
ArrayExpress:F6P841 Bgee:F6P841 Uniprot:F6P841
Length = 1004
Score = 114 (45.2 bits), Expect = 0.00092, P = 0.00092
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 2 EASSLRKSSYHMKREKR--EREKFVS------RVISPAIRGQK----CPICLDNLTDRRT 49
E+ +L+K+ + R +R E++K V ++ I K CP C N D+ T
Sbjct: 904 ESVNLKKAQEDLSRLRRKLEKQKKVEVYTDADEILQEEINQYKAKLRCPCC--NTRDKET 961
Query: 50 AVLKVCTHAYCLECIE-KWSNLKRNCPLCNAPF-RSWFYRI 88
+ K C H +C EC++ ++ +R CP CNA F + F+RI
Sbjct: 962 VLTK-CFHVFCYECLKTRYDTRQRKCPKCNAAFGANDFHRI 1001
>UNIPROTKB|I3LUY7 [details] [associations]
symbol:I3LUY7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051301 "cell division" evidence=IEA] [GO:0016881
"acid-amino acid ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR017335 Pfam:PF13639 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
GeneTree:ENSGT00400000022349 PANTHER:PTHR15067:SF3 EMBL:CU855572
Ensembl:ENSSSCT00000029099 OMA:VEMKEHR Uniprot:I3LUY7
Length = 135
Score = 95 (38.5 bits), Expect = 0.00097, P = 0.00097
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 6 LRKSSYHMKREKREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIE 65
L ++ ++ + ++E+ +S + +C IC + + AV C H++C CI
Sbjct: 22 LEQTKEEKEKVQAQKEEVLSHMNDVLENELQCIICSEYFIE---AVTLNCAHSFCSYCIN 78
Query: 66 KWSNLKRNCPLCNAPFRS 83
+W K CP+C +S
Sbjct: 79 EWMKRKVECPICRKDIKS 96
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.136 0.448 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 246 214 0.00085 112 3 11 22 0.46 32
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 84
No. of states in DFA: 617 (66 KB)
Total size of DFA: 203 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.24u 0.11s 17.35t Elapsed: 00:00:01
Total cpu time: 17.25u 0.11s 17.36t Elapsed: 00:00:01
Start: Mon May 20 19:53:29 2013 End: Mon May 20 19:53:30 2013