BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046606
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRIN 89
A ++CPICL++ ++ A+ C HA+C CI +W CPLC P S + I
Sbjct: 2 ATVAERCPICLEDPSNYSMAL--PCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIE 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D R ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 16 EECCICMDG----RADLILPCAHSFCQKCIDKWSDRHRNCPIC 54
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
+ C +CL++ R + C HA+ +C+ KW +++ CPLCN P
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 34 GQKCPICLDNLTDRRTA-VLKVCTHAYCLECIEKWSNLKRNCPLC 77
G +C +CL L D A L C H + EC++ W CPLC
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLC 49
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 5 SLRKSSYHMKREKREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECI 64
L ++ ++ + ++E+ +S + +C IC + + AV C H++C CI
Sbjct: 35 ELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIE---AVTLNCAHSFCSYCI 91
Query: 65 EKWSNLKRNCPLCNAPFRSWFYRI 88
+W K CP+C +S Y +
Sbjct: 92 NEWMKRKIECPICRKDIKSKTYSL 115
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 5 SLRKSSYHMKREKREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECI 64
L ++ ++ + ++E+ +S + +C IC + + AV C H++C CI
Sbjct: 24 ELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIE---AVTLNCAHSFCSYCI 80
Query: 65 EKWSNLKRNCPLCNAPFRSWFYRI 88
+W K CP+C +S Y +
Sbjct: 81 NEWMKRKIECPICRKDIKSKTYSL 104
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 5 SLRKSSYHMKREKREREKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECI 64
L ++ ++ + ++E+ +S + +C IC + + AV C H++C CI
Sbjct: 24 ELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIE---AVTLNCAHSFCSYCI 80
Query: 65 EKWSNLKRNCPLCNAPFRSWFYRI 88
+W K CP+C +S Y +
Sbjct: 81 NEWMKRKIECPICRKDIKSKTYSL 104
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
C +C+ + R+ + C H + +C++KW R CP+C A
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 9 SSYHMKREKRER-EKFVSRVISP-AIRGQ-KCPICLDNLTDRRTAVLKVCTHAYCLEC-I 64
S Y ++R +E + V+SP ++ + CPICLD L + T K C H +C +C I
Sbjct: 25 SLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDML--KNTMTTKECLHRFCADCII 82
Query: 65 EKWSNLKRNCPLC 77
+ + CP C
Sbjct: 83 TALRSGNKECPTC 95
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLEC-IEKWSNLKRNCPLC 77
CPICLD L + T K C H +C +C I + + CP C
Sbjct: 57 CPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTC 96
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 32.7 bits (73), Expect = 0.21, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK---RNCPLCNAPFR 82
CPICLD L + V C H +CL+CI + CPLC R
Sbjct: 23 CPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 9 SSYHMKREKRER-EKFVSRVISP-AIRGQ-KCPICLDNLTDRRTAVLKVCTHAYCLEC-I 64
S Y ++R +E + V+SP ++ + CPICLD L + T K C H +C +C I
Sbjct: 6 SLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDML--KNTMTTKECLHRFCADCII 63
Query: 65 EKWSNLKRNCPLC 77
+ + CP C
Sbjct: 64 TALRSGNKECPTC 76
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 24 VSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKR---NCPLC 77
V VI+ + +CPICL+ + + V C H +C C+ K N K+ CPLC
Sbjct: 11 VQNVINAMQKILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 32.0 bits (71), Expect = 0.37, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK---RNCPLC 77
CPICLD L + V C H +CL+CI + CPLC
Sbjct: 23 CPICLDIL---QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 37 CPICLDNL-TDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
CPICL+++ T R A + C H C E+ CPLC+ P
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECI------EKWSNLKRNCPLCNAPF 81
CPICL+ L + +A C H++C CI + ++ K NCP+C P+
Sbjct: 22 CPICLELLKEPVSAD---CNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYR 87
T VC HA+ CI +W ++ CPL N R W ++
Sbjct: 78 TVAWGVCNHAFHFHCISRWLKTRQVCPLDN---REWEFQ 113
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEK--WSNLKRNCPLCN 78
C IC D +TD V+ C ++YC ECI + + CP C+
Sbjct: 18 CLICKDIMTD--AVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYR 87
T VC HA+ CI +W ++ CPL N R W ++
Sbjct: 67 TVAWGVCNHAFHFHCISRWLKTRQVCPLDN---REWEFQ 102
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYR 87
T VC HA+ CI +W ++ CPL N R W ++
Sbjct: 69 TVAWGVCNHAFHFHCISRWLKTRQVCPLDN---REWEFQ 104
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYR 87
T VC HA+ CI +W ++ CPL N R W ++
Sbjct: 67 TVAWGVCNHAFHFHCISRWLKTRQVCPLDN---REWEFQ 102
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 36 KCPICLDNLTDRRT-AVLKVCTHAYCLECIEKWSNLKRN---CPLCNAPFR 82
+CPIC+++ T+ + L C H C +C+EK N CP C+ R
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 35 QKCPICLDNLTDRRTAVLK----VCTHAYCLECIEK-WSNLKRNCPLCNAPFRSWFYRI 88
Q CP C T R LK VC H C C++ + NCP C P R +R+
Sbjct: 4 QGCPRC--KTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 37 CPICLDN----LTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
CPIC+D + + R V C H +C +C+ CP C
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 57
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYR 87
T VC HA+ CI +W ++ CPL N R W ++
Sbjct: 61 TVAWGVCNHAFHFHCISRWLKTRQVCPLDN---REWEFQ 96
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLC 77
Q C IC +N D + ++ C H C C+ W + + CP C
Sbjct: 335 QLCKICAENDKDVK---IEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLC 77
Q C IC +N D + ++ C H C C+ W + + CP C
Sbjct: 335 QLCKICAENDKDVK---IEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYR 87
T VC HA+ CI +W ++ CPL N R W ++
Sbjct: 59 TVAWGVCNHAFHFHCISRWLKTRQVCPLDN---REWEFQ 94
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 24 VSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
V + I +R C IC + ++ C+H YC CI K+ + K CP C
Sbjct: 15 VMKTIDDLLR---CGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLC 77
Q C IC +N D + ++ C H C C+ W + + CP C
Sbjct: 333 QLCKICAENDKDVK---IEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLC 77
Q C IC +N D + ++ C H C C+ W + + CP C
Sbjct: 333 QLCKICAENDKDVK---IEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
C +C D T + C H++C CI ++ + CP+C+
Sbjct: 18 CVLCGGYFIDATTII--ECLHSFCKTCIVRYLETSKYCPICDV 58
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83
KC ICL L + C H + C+++W + CP+C +
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 37 CPICLDN----LTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
CPIC+D + + R V C H +C +C+ CP C
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 54
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 37 CPICLDN----LTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
CPIC+D + + R V C H +C +C+ CP C
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 119
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
C +C D T + C H++C CI ++ + CP+C+
Sbjct: 18 CVLCGGYFIDATTII--ECLHSFCKTCIVRYLETSKYCPICDV 58
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
C +C D T + C H++C CI ++ + CP+C+
Sbjct: 14 CVLCGGYFIDATTII--ECLHSFCKTCIVRYLETSKYCPICDV 54
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 32 IRGQKCPICLDNL-TDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
+ Q CPICL+++ T R A + C H C E+ CPLC
Sbjct: 3 VSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 37 CPICLDN----LTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
CPIC+D + + R V C H +C +C+ CP C
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 50
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLC 77
Q C IC +N D + ++ C H C C+ W + CP C
Sbjct: 339 QLCKICAENDKDVK---IEPCGHLMCTSCLTAWQESDGQGCPFC 379
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 37 CPICLDN----LTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
CPIC+D + + R V C H +C +C+ CP C
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 62
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 49 TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYR 87
T VC HA+ CI +W ++ CPL N R W ++
Sbjct: 51 TVAWGVCNHAFHFHCISRWLKTRQVCPLDN---REWEFQ 86
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEK-WSNLKRN--CPLC 77
C +CL+ L + V+ C H +C CI + W +L+R+ CP+C
Sbjct: 18 CSVCLEYL---KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
G +CP+C ++ + C H + CI W +CP+C
Sbjct: 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVC 58
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human
Ubiquitin- Protein Ligase (E3), Northeast Structural
Genomics Consortium Target Hr4604d
Length = 100
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKR-NCPLCNAPFR 82
+C IC + L D R + C+ C CI +W +R CP C AP +
Sbjct: 24 RCFICXEKLRDAR--LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83
C +CLD + V C H C EC + CP+C AP RS
Sbjct: 16 CKVCLDRAV---SIVFVPCGHLVCAECAPGL----QLCPICRAPVRS 55
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLCNAPFRS 83
Q C IC +N D + ++ C H C C+ W + + CP C +
Sbjct: 28 QLCKICAENDKDVK---IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 74
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 27.7 bits (60), Expect = 6.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECI-----EKWSNL--KRNCPLCNAPF 81
CPICL+ LT+ + C H+ C CI E +++ K +CP+C +
Sbjct: 15 CPICLELLTEPLSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLCNAPFRS 83
Q C IC +N D + ++ C H C C+ W + + CP C +
Sbjct: 25 QLCKICAENDKDVK---IEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 71
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEK-WSNLKRNCPLCN 78
+CPICL L R AV C H +C CI K + CP+ N
Sbjct: 27 ECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDN 67
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLCNAPFRS 83
Q C IC +N D + ++ C H C C+ W + CP C +
Sbjct: 27 QLCKICAENDKDVK---IEPCGHLMCTSCLTAWQESDGQGCPFCRCEIKG 73
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEK--WSNLKRNCPLC 77
C IC D +TD V+ C ++YC ECI + + CP C
Sbjct: 16 CLICKDIMTD--AVVIPCCGNSYCDECIRTALLESDEHTCPTC 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,214,548
Number of Sequences: 62578
Number of extensions: 201908
Number of successful extensions: 662
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 68
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)