BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046606
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 22 KFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
K V + A KCPICLD + + L C H +C C+++WS K CPLC PF
Sbjct: 89 KLQQTVPADASPDSKCPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPF 146
Query: 82 RSWFYRINLSSSDFLQQQLQP 102
S F+ + + DF + L+P
Sbjct: 147 DSIFHSVR-AEDDFKEYVLRP 166
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 22 KFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
K V + A KCPICLD + + L C H +C C+++WS K CPLC PF
Sbjct: 88 KLQQTVPADASPDSKCPICLDRFDN--VSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPF 145
Query: 82 RSWFYRINLSSSDFLQQQLQP 102
S F+ + + DF + L+P
Sbjct: 146 DSIFHSVR-AEDDFKEYVLRP 165
>sp|Q99590|SCAFB_HUMAN Protein SCAF11 OS=Homo sapiens GN=SCAF11 PE=1 SV=2
Length = 1463
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 14 KREKREREKFVSRVISPAI---RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL 70
K E E E+ IS + +CPICL+ L ++ + C H +C+ CI KW+
Sbjct: 15 KYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWAET 74
Query: 71 KRNCPLCNAPFRSWF 85
+CP+ PF++ F
Sbjct: 75 LASCPIDRKPFQAVF 89
>sp|P29129|ICP0_SUHVF E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain
Indiana-Funkhauser / Becker) GN=EP0 PE=2 SV=1
Length = 410
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDF 95
CPICLD A C H +CL+CI++W+ CPLCNA S + ++ S + F
Sbjct: 45 DCPICLDVAATE--AQTLPCMHKFCLDCIQRWTLTSTACPLCNARVTSILHHVD-SDASF 101
Query: 96 LQQQLQ 101
++ ++
Sbjct: 102 VETPVE 107
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2
(strain K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRI 88
C ICLD +T A+ C HA+CL CI +W + CPLC AP +S + +
Sbjct: 13 CCICLDAITGAARAL--PCLHAFCLACIRRWLEGRPTCPLCKAPVQSLIHSV 62
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1
(strain Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRI 88
C ICLD +T A+ C HA+CL CI +W + CPLC AP +S + +
Sbjct: 13 CCICLDAITGAARAL--PCLHAFCLACIRRWLEGRPTCPLCKAPVQSLIHSV 62
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINL 90
A ++CPICL++ ++ A+ C HA+C CI +W CPLC P S + I
Sbjct: 2 ATVAERCPICLEDPSNYSMAL--PCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIE- 58
Query: 91 SSSDFLQQQL 100
S S+F + ++
Sbjct: 59 SDSEFKETKV 68
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINL 90
A ++CPICL++ ++ A+ C HA+C CI +W CPLC P S + I
Sbjct: 2 ATVAERCPICLEDPSNYSMAL--PCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTIE- 58
Query: 91 SSSDFLQQQL 100
S S+F + ++
Sbjct: 59 SDSEFKETKV 68
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRI--NL 90
R KCPICL + +AV C H +C CI K + CP+C P+ R ++
Sbjct: 12 RELKCPICL---SLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGAPHM 68
Query: 91 SSSDFLQQQLQPLIKDKTFISQSHSSPRTPHRIIRRSRDEISSDRGR 137
S + + ++ K F+SQ++ SP + +R + E +SD+ R
Sbjct: 69 DSLVSIYKNMEDASGIKLFVSQNNPSPSDKEKQVRDASVEKASDKNR 115
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 32 IRGQKCPICLDNLT-DRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
I G +C +CL+ D +L C+HA+ L CI+ W +NCPLC AP
Sbjct: 130 IDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAP 179
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRI 88
C ICL RR C H +C +C+ +WS +K CPLC PFR+ + +
Sbjct: 101 NCAICLSRC--RRKCFTDSCMHQFCFKCLCEWSKIKPECPLCKQPFRTIIHNV 151
>sp|B1AUE5|PEX10_MOUSE Peroxisome biogenesis factor 10 OS=Mus musculus GN=Pex10 PE=2 SV=1
Length = 324
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
+ P+C L +RR + C H +C ECI +W N K CPLC F
Sbjct: 267 RTPLCTLCLEERRHSTATPCGHLFCWECITEWCNTKTECPLCREKF 312
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus
GN=Phrf1 PE=1 SV=2
Length = 1682
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82
+ CPICL+ D+ + C H +CL+CI +WS +CP+ F+
Sbjct: 106 AESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRTVFK 154
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC----NAPFRSWF 85
++C IC+D D ++ C H++C +CI+KWS RNCP+C A SW
Sbjct: 145 EECCICMDGKAD----LILPCAHSFCQKCIDKWSGQSRNCPVCRIQVTAANESWV 195
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D R ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 154 EECCICMDG----RADLILPCAHSFCQKCIDKWSDRHRNCPIC 192
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus
norvegicus GN=Phrf1 PE=1 SV=2
Length = 1685
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82
+ CPICL+ D+ + C H +CL+CI +WS +CP+ F+
Sbjct: 106 AESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRTIFK 154
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D R ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDG----RADLILPCAHSFCQKCIDKWSDRHRNCPIC 191
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D R ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDG----RADLILPCAHSFCQKCIDKWSDRHRNCPIC 191
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D R ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDG----RADLILPCAHSFCQKCIDKWSDRHRNCPIC 191
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens
GN=PHRF1 PE=1 SV=3
Length = 1649
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPL 76
+ CPICL+ D+ + C H +CL+CI +WS +CP+
Sbjct: 105 AESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPV 147
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D R ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDG----RADLILPCAHSFCQKCIDKWSDRHRNCPIC 191
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
++C IC+D R ++ C H++C +CI+KWS+ RNCP+C
Sbjct: 153 EECCICMDG----RADLILPCAHSFCQKCIDKWSDRHRNCPIC 191
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
G CPIC + R V C H +C ECI +W N +R CPLC
Sbjct: 356 GDICPICQADFKQPRVLV---CQHIFCEECIAQWLNQERTCPLC 396
>sp|P09309|IE61_VZVD E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus (strain
Dumas) GN=61 PE=1 SV=1
Length = 467
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFL 96
C IC+ ++D + C H +C CI W++ CPLC P +S ++I +S + +
Sbjct: 19 CTICMSTVSDLGKTM--PCLHDFCFVCIRAWTSTSVQCPLCRCPVQSILHKI-VSDTSYK 75
Query: 97 QQQLQPLIKD 106
+ ++ P D
Sbjct: 76 EYEVHPSDDD 85
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 27 VISPAIRGQKCPICL-DNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85
++ I CP+CL + T+ + +L C+HA+ +ECI+ W CPLC + S F
Sbjct: 116 IVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGF 175
Query: 86 -YRINLSSSDFLQQQLQPLIKDKTFISQSHS 115
NLSSS L + + +D + +S+S
Sbjct: 176 SSHHNLSSSYLLVLESEQSSRDMVPVLESNS 206
>sp|P08393|ICP0_HHV11 E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 1 (strain 17)
GN=ICP0 PE=1 SV=1
Length = 775
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSS 93
G C +C D + C H +C+ C++ W L+ CPLCNA + S S
Sbjct: 113 GDVCAVCTDEIAPHLRCDTFPCMHRFCIPCMKTWMQLRNTCPLCNAKLVYLIVGVTPSGS 172
>sp|P28284|ICP0_HHV2H E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 2 (strain
HG52) GN=RL2 PE=3 SV=1
Length = 825
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSS 93
C +C D + C H +C+ C++ W L+ CPLCN P + S S
Sbjct: 126 CAVCTDEIAPPLRCQSFPCLHPFCIPCMKTWIPLRNTCPLCNTPVAYLIVGVTASGS 182
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 33 RGQKCPICLDNLTDRRTA-VLKVCTHAYCLECIEKWSNLKRNCPLC 77
G +C ICL +D T ++ VC H + CI+ W L + CP+C
Sbjct: 99 HGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVC 144
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
+C IC+D R ++ C H++C +CI+KWS+ R+CP+C
Sbjct: 154 ECCICMDG----RVDLILPCAHSFCQKCIDKWSDRHRSCPVC 191
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 2
OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
Length = 1029
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 6 LRKSSYHMKREKRE--REKFVSRVISPAIRGQK--CPICLDNLTDRRTAVLKVCTHAYCL 61
L S ++RE ++ E FV V+ +G++ CPICL+ L D AVL C H C
Sbjct: 759 LSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALED---AVLTPCAHRLCR 815
Query: 62 EC-IEKWSNLKRN-CPLC 77
EC + W N CP+C
Sbjct: 816 ECLLASWRNSTSGLCPVC 833
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 34 GQKCPICLDNLTDRRTA-VLKVCTHAYCLECIEKWSNLKRNCPLC 77
G +C +CL +L D A VL C H + ++CI+ W CPLC
Sbjct: 117 GLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLC 161
>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40
PE=2 SV=1
Length = 1001
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 2 EASSLRKSSYHMKREKREREKF--------VSRVISPAIRGQK----CPICLDNLTDRRT 49
E+ +L+++ + R +R+ EK ++ I+ K CP C T ++
Sbjct: 901 ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCN---TRKKD 957
Query: 50 AVLKVCTHAYCLECIE-KWSNLKRNCPLCNAPFRSW-FYRINLS 91
AVL C H +C EC+ ++ +R CP CNA F + F+RI +S
Sbjct: 958 AVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYIS 1001
>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4
Length = 1001
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 2 EASSLRKSSYHMKREKREREKF--------VSRVISPAIRGQK----CPICLDNLTDRRT 49
E+ +L+++ + R +R+ EK ++ I+ K CP C T ++
Sbjct: 901 ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCN---TRKKD 957
Query: 50 AVLKVCTHAYCLECIE-KWSNLKRNCPLCNAPFRSW-FYRINLS 91
AVL C H +C EC+ ++ +R CP CNA F + F+RI +S
Sbjct: 958 AVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYIS 1001
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 32 IRGQKCPICLDNLT-DRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
I CP+CL+ D +L C HA+ + CI+ W + NCPLC A
Sbjct: 172 IERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRA 220
>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1
PE=1 SV=2
Length = 1044
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 24/101 (23%)
Query: 2 EASSLRKSSYHMKREKREREKF----------------VSRVISPAIRGQK----CPICL 41
+ SSL +Y KR + E +F + V+ IR K CP C
Sbjct: 936 KTSSLEAEAYKTKRLQEELAQFKRKAERMKKMEMSGTTIDEVMIEEIREYKETLTCPSCK 995
Query: 42 DNLTDRRTAVLKVCTHAYCLECIE-KWSNLKRNCPLCNAPF 81
R+ AVL C H +C +C+ ++ +R CP CN F
Sbjct: 996 ---VKRKDAVLSKCFHVFCYDCLRTRYETRQRKCPKCNCAF 1033
>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1
Length = 1001
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 2 EASSLRKSSYHMKREKREREKF--------VSRVISPAIRGQK----CPICLDNLTDRRT 49
E+ +L+++ + R +R+ EK ++ I+ K CP C T ++
Sbjct: 901 ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCN---TRKKD 957
Query: 50 AVLKVCTHAYCLECIE-KWSNLKRNCPLCNAPFRSW-FYRINLS 91
AVL C H +C EC+ ++ +R CP CNA F + F+RI +S
Sbjct: 958 AVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYIS 1001
>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2
Length = 1001
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 2 EASSLRKSSYHMKREKREREKF--------VSRVISPAIRGQK----CPICLDNLTDRRT 49
E+ +L+++ + R +R+ EK ++ I+ K CP C T ++
Sbjct: 901 ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCN---TRKKD 957
Query: 50 AVLKVCTHAYCLECIE-KWSNLKRNCPLCNAPFRSW-FYRINLS 91
AVL C H +C EC+ ++ +R CP CNA F + F+R+ +S
Sbjct: 958 AVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYIS 1001
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 38 PICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
P+C L +RR C H +C ECI W + K CPLC F
Sbjct: 271 PLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKF 314
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 32 IRGQKCPICLDNLTDRRTA-VLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
+ G C +CL + + +L C HA+ L CI+ W NCPLC A
Sbjct: 137 VDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185
>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1
SV=1
Length = 1002
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 2 EASSLRKSSYHMKREKREREKF--------VSRVISPAIRGQK----CPICLDNLTDRRT 49
E+ +L+++ + R +R+ EK ++ I+ K CP C T ++
Sbjct: 902 ESFNLKRAQEDISRLRRKLEKQRKVEVYADADEILQEEIKEYKARLTCPCCN---TRKKD 958
Query: 50 AVLKVCTHAYCLECIE-KWSNLKRNCPLCNAPFRSW-FYRINLS 91
AVL C H +C EC+ ++ +R CP CNA F + F+R+ +S
Sbjct: 959 AVLTKCFHVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYIS 1002
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 KCPICLDNLTDRRTA-VLKVCTHAYCLECIEKWSNLKRNCPLC 77
+C ICL+ L D T +L +C H + ++CI+ W CP+C
Sbjct: 123 ECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVC 165
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 38 PICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81
P+C L +RR C H +C ECI W + K CPLC F
Sbjct: 271 PLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKF 314
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAP 80
KC +CL + R+ C H +C CI +W N K+ CPLC P
Sbjct: 326 KCTLCL---STRQHPTATPCGHVFCWSCIMEWCNEKQECPLCRTP 367
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 36 KCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
C +CL+ +D + +L VC+HA+ L CI+ W CPLC
Sbjct: 206 DCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLC 248
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 32 IRGQKCPICLDNLTDRRTA-VLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINL 90
+ C +CL + + +L C HA+ + CI+ W NCPLC A + +
Sbjct: 154 VESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA------FIVTS 207
Query: 91 SSSDFLQQQLQPLIKDKTFISQSHSSPRTPHRIIRRSRDEISSDRGRSRPLPWRRSFGRP 150
S+ + + Q ++ + IS S + + SR + S P P R
Sbjct: 208 SAVEIVDLTNQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSRD 267
Query: 151 G 151
G
Sbjct: 268 G 268
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 34 GQKCPICLDNLTDRRTA-VLKVCTHAYCLECIEKWSNLKRNCPLCNA 79
G +C ICL+ D T ++ C+HA+ CI+ W + + CP+C A
Sbjct: 125 GVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRA 171
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83
+ GQ C +CL++ + + C HA+ +C+ KW ++ CP+CN P S
Sbjct: 88 LYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAS 139
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana
GN=RHF1A PE=1 SV=1
Length = 371
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
C ICL+ T + + + C H Y L+CI +WS + CP+C
Sbjct: 46 CSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPIC 86
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 33 RGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77
R Q+C +CL D + ++ C+H + ++CI+ W NCPLC
Sbjct: 134 RSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLC 179
>sp|Q5DTM8|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1
SV=2
Length = 973
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 37 CPICLDNLTDRRTAVLKVCTHAYCLECIE-KWSNLKRNCPLCNAPFRSW-FYRI 88
CP C N+ ++ AVL C H +C EC++ ++ +R CP CNA F + F+RI
Sbjct: 920 CPCC--NMR-KKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRI 970
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,628,224
Number of Sequences: 539616
Number of extensions: 3548123
Number of successful extensions: 12564
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 395
Number of HSP's that attempted gapping in prelim test: 12030
Number of HSP's gapped (non-prelim): 787
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)