Query 046606
Match_columns 246
No_of_seqs 300 out of 1814
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:34:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.3 9.2E-13 2E-17 84.0 1.0 44 35-78 1-44 (44)
2 PF15227 zf-C3HC4_4: zinc fing 99.1 2.6E-11 5.7E-16 76.5 3.0 38 37-77 1-42 (42)
3 PLN03208 E3 ubiquitin-protein 99.1 4.9E-11 1.1E-15 98.4 4.1 55 28-85 12-82 (193)
4 KOG0317 Predicted E3 ubiquitin 99.1 5E-11 1.1E-15 103.0 2.9 51 30-83 235-285 (293)
5 PF13920 zf-C3HC4_3: Zinc fing 99.1 5.4E-11 1.2E-15 77.9 2.3 48 33-83 1-49 (50)
6 PHA02929 N1R/p28-like protein; 99.1 9.4E-11 2E-15 100.4 4.4 54 31-84 171-229 (238)
7 PF13923 zf-C3HC4_2: Zinc fing 99.1 8.8E-11 1.9E-15 72.9 2.3 39 37-77 1-39 (39)
8 KOG0823 Predicted E3 ubiquitin 99.0 1.9E-10 4.1E-15 96.7 3.4 51 31-84 44-97 (230)
9 KOG0320 Predicted E3 ubiquitin 99.0 1.3E-10 2.9E-15 93.8 2.2 53 32-85 129-181 (187)
10 smart00504 Ubox Modified RING 99.0 2.6E-10 5.6E-15 77.9 3.3 53 34-89 1-53 (63)
11 PF12678 zf-rbx1: RING-H2 zinc 99.0 3E-10 6.6E-15 80.3 3.7 46 33-78 18-73 (73)
12 TIGR00599 rad18 DNA repair pro 99.0 4.6E-10 1E-14 102.7 4.1 66 29-97 21-86 (397)
13 KOG4628 Predicted E3 ubiquitin 98.9 8.4E-10 1.8E-14 98.8 3.4 49 35-83 230-279 (348)
14 PHA02926 zinc finger-like prot 98.9 1.3E-09 2.8E-14 91.2 3.1 56 29-84 165-232 (242)
15 cd00162 RING RING-finger (Real 98.9 2.5E-09 5.4E-14 67.2 3.6 44 36-81 1-45 (45)
16 PF00097 zf-C3HC4: Zinc finger 98.8 1.6E-09 3.5E-14 67.7 2.5 38 37-77 1-41 (41)
17 PF14634 zf-RING_5: zinc-RING 98.7 1.2E-08 2.6E-13 64.9 3.4 44 36-79 1-44 (44)
18 PF04564 U-box: U-box domain; 98.7 1E-08 2.2E-13 72.5 2.7 66 32-100 2-68 (73)
19 COG5540 RING-finger-containing 98.7 1.1E-08 2.4E-13 89.0 3.1 56 28-83 317-373 (374)
20 smart00184 RING Ring finger. E 98.7 1.6E-08 3.5E-13 61.2 3.0 38 37-77 1-39 (39)
21 COG5243 HRD1 HRD ubiquitin lig 98.7 1.2E-08 2.6E-13 91.0 3.0 51 31-81 284-344 (491)
22 PF12861 zf-Apc11: Anaphase-pr 98.6 3.3E-08 7.1E-13 71.1 3.6 52 32-83 19-83 (85)
23 KOG0287 Postreplication repair 98.6 8.3E-09 1.8E-13 90.9 0.3 59 32-93 21-79 (442)
24 KOG2164 Predicted E3 ubiquitin 98.6 2.1E-08 4.6E-13 92.8 2.6 53 34-89 186-243 (513)
25 COG5574 PEX10 RING-finger-cont 98.5 3.7E-08 8.1E-13 84.3 2.1 50 32-84 213-264 (271)
26 COG5432 RAD18 RING-finger-cont 98.5 7.3E-08 1.6E-12 83.5 2.5 51 32-85 23-73 (391)
27 TIGR00570 cdk7 CDK-activating 98.5 2E-07 4.4E-12 82.4 5.1 53 33-85 2-57 (309)
28 PF13445 zf-RING_UBOX: RING-ty 98.5 9.6E-08 2.1E-12 60.4 2.2 38 37-75 1-43 (43)
29 KOG2930 SCF ubiquitin ligase, 98.4 3.2E-08 6.9E-13 72.9 -0.6 57 26-82 38-108 (114)
30 PF14835 zf-RING_6: zf-RING of 98.3 1.1E-07 2.5E-12 64.4 -0.1 58 33-94 6-63 (65)
31 KOG0978 E3 ubiquitin ligase in 98.3 2.2E-07 4.7E-12 89.9 0.5 51 33-86 642-693 (698)
32 COG5194 APC11 Component of SCF 98.2 7E-07 1.5E-11 62.9 2.5 52 32-83 18-82 (88)
33 KOG0802 E3 ubiquitin ligase [P 98.2 4.2E-07 9.1E-12 87.3 1.5 51 32-82 289-341 (543)
34 KOG4172 Predicted E3 ubiquitin 98.2 1.6E-07 3.4E-12 61.4 -1.1 48 34-84 7-56 (62)
35 KOG2177 Predicted E3 ubiquitin 98.2 5.4E-07 1.2E-11 78.3 1.6 46 31-79 10-55 (386)
36 KOG0311 Predicted E3 ubiquitin 98.2 2.1E-07 4.5E-12 82.7 -1.4 69 32-102 41-111 (381)
37 KOG2660 Locus-specific chromos 98.0 6.7E-07 1.5E-11 79.0 -1.0 75 31-107 12-90 (331)
38 KOG4265 Predicted E3 ubiquitin 98.0 3.6E-06 7.8E-11 75.2 2.8 50 32-84 288-338 (349)
39 KOG0824 Predicted E3 ubiquitin 97.9 5.3E-06 1.2E-10 72.4 2.3 52 31-85 4-56 (324)
40 KOG1734 Predicted RING-contain 97.7 9.5E-06 2.1E-10 69.9 1.0 60 27-86 217-285 (328)
41 KOG4159 Predicted E3 ubiquitin 97.7 2E-05 4.3E-10 72.5 2.4 49 32-83 82-130 (398)
42 KOG1039 Predicted E3 ubiquitin 97.7 2E-05 4.4E-10 71.1 2.3 56 30-85 157-224 (344)
43 PF11789 zf-Nse: Zinc-finger o 97.6 2.8E-05 6E-10 52.2 1.9 44 31-76 8-53 (57)
44 PF11793 FANCL_C: FANCL C-term 97.6 1.1E-05 2.4E-10 56.5 -0.5 50 34-83 2-67 (70)
45 KOG0828 Predicted E3 ubiquitin 97.6 2.7E-05 5.9E-10 72.1 1.6 51 33-83 570-635 (636)
46 KOG1493 Anaphase-promoting com 97.6 1.1E-05 2.5E-10 56.3 -0.8 52 31-82 17-81 (84)
47 KOG2879 Predicted E3 ubiquitin 97.6 6.7E-05 1.4E-09 64.9 3.5 51 32-84 237-289 (298)
48 smart00744 RINGv The RING-vari 97.5 6.5E-05 1.4E-09 48.8 2.6 42 36-78 1-49 (49)
49 KOG4430 Topoisomerase I-bindin 97.5 1.2E-05 2.5E-10 75.9 -1.3 62 158-220 18-80 (553)
50 KOG0825 PHD Zn-finger protein 97.5 2.2E-05 4.8E-10 76.2 -0.7 53 33-85 122-174 (1134)
51 KOG0804 Cytoplasmic Zn-finger 97.4 6.4E-05 1.4E-09 69.0 2.2 52 29-82 170-222 (493)
52 COG5152 Uncharacterized conser 97.4 5.3E-05 1.1E-09 62.6 0.7 47 34-83 196-242 (259)
53 KOG0297 TNF receptor-associate 97.4 8.2E-05 1.8E-09 68.8 1.7 51 31-84 18-69 (391)
54 KOG1813 Predicted E3 ubiquitin 97.2 0.00011 2.3E-09 64.3 1.0 48 34-84 241-288 (313)
55 KOG0827 Predicted E3 ubiquitin 97.1 0.00021 4.5E-09 64.6 1.9 50 34-83 4-57 (465)
56 KOG4692 Predicted E3 ubiquitin 96.9 0.00045 9.7E-09 61.9 2.1 50 31-83 419-468 (489)
57 KOG1645 RING-finger-containing 96.9 0.0006 1.3E-08 62.1 2.7 50 33-82 3-56 (463)
58 PF14570 zf-RING_4: RING/Ubox 96.8 0.0011 2.3E-08 42.7 2.8 46 37-82 1-48 (48)
59 KOG3039 Uncharacterized conser 96.7 0.0016 3.4E-08 55.8 3.5 54 32-85 219-273 (303)
60 COG5219 Uncharacterized conser 96.6 0.00062 1.3E-08 67.7 0.7 53 30-82 1465-1523(1525)
61 KOG1785 Tyrosine kinase negati 96.6 0.00082 1.8E-08 61.1 1.1 48 34-84 369-418 (563)
62 KOG4275 Predicted E3 ubiquitin 96.6 0.0004 8.7E-09 60.6 -1.0 43 34-83 300-343 (350)
63 COG5222 Uncharacterized conser 96.5 0.001 2.2E-08 58.4 1.4 43 35-79 275-318 (427)
64 PF04641 Rtf2: Rtf2 RING-finge 96.5 0.0033 7.2E-08 55.0 4.6 54 31-85 110-164 (260)
65 KOG3970 Predicted E3 ubiquitin 96.5 0.0026 5.6E-08 53.8 3.4 54 29-83 45-106 (299)
66 COG5236 Uncharacterized conser 96.5 0.003 6.4E-08 56.6 3.9 53 30-85 57-111 (493)
67 KOG4445 Uncharacterized conser 96.4 0.0007 1.5E-08 59.4 -0.6 52 32-83 113-187 (368)
68 KOG1571 Predicted E3 ubiquitin 96.4 0.0018 4E-08 58.2 2.0 49 29-83 300-348 (355)
69 KOG0826 Predicted E3 ubiquitin 96.2 0.0036 7.8E-08 55.6 2.7 51 29-81 295-345 (357)
70 KOG4739 Uncharacterized protei 96.1 0.003 6.5E-08 54.0 2.0 62 36-101 5-66 (233)
71 KOG1002 Nucleotide excision re 96.1 0.0019 4.2E-08 60.7 0.7 48 32-82 534-586 (791)
72 KOG1428 Inhibitor of type V ad 95.8 0.0056 1.2E-07 63.5 2.6 56 29-84 3481-3546(3738)
73 KOG1940 Zn-finger protein [Gen 95.8 0.0024 5.1E-08 56.1 0.0 53 32-85 156-209 (276)
74 PF07800 DUF1644: Protein of u 95.8 0.0094 2E-07 47.8 3.3 34 33-69 1-47 (162)
75 PHA03096 p28-like protein; Pro 95.3 0.0072 1.6E-07 53.5 1.1 45 35-79 179-231 (284)
76 KOG3800 Predicted E3 ubiquitin 95.2 0.02 4.2E-07 50.3 3.4 53 36-88 2-57 (300)
77 COG5175 MOT2 Transcriptional r 95.0 0.014 3E-07 52.3 2.0 55 31-85 11-67 (480)
78 KOG2114 Vacuolar assembly/sort 94.7 0.016 3.4E-07 57.5 1.8 46 33-83 839-884 (933)
79 PF14447 Prok-RING_4: Prokaryo 94.4 0.019 4.2E-07 37.9 1.1 46 33-83 6-51 (55)
80 KOG1941 Acetylcholine receptor 94.3 0.011 2.5E-07 53.7 -0.2 52 32-83 363-417 (518)
81 KOG4367 Predicted Zn-finger pr 94.1 0.026 5.7E-07 52.1 1.6 36 32-70 2-37 (699)
82 PF10367 Vps39_2: Vacuolar sor 94.0 0.021 4.6E-07 42.5 0.8 33 32-65 76-108 (109)
83 KOG1814 Predicted E3 ubiquitin 93.9 0.029 6.4E-07 51.4 1.7 47 33-79 183-237 (445)
84 PHA02825 LAP/PHD finger-like p 93.9 0.074 1.6E-06 42.8 3.7 50 31-84 5-61 (162)
85 KOG1001 Helicase-like transcri 93.8 0.024 5.3E-07 55.9 1.1 46 35-84 455-502 (674)
86 KOG4185 Predicted E3 ubiquitin 93.7 0.048 1E-06 48.3 2.8 48 34-81 3-54 (296)
87 PHA02862 5L protein; Provision 93.7 0.046 9.9E-07 43.3 2.2 46 34-83 2-54 (156)
88 PF05290 Baculo_IE-1: Baculovi 93.5 0.062 1.3E-06 41.9 2.5 54 29-84 75-134 (140)
89 COG5220 TFB3 Cdk activating ki 93.3 0.027 5.8E-07 48.2 0.4 53 33-85 9-67 (314)
90 KOG2817 Predicted E3 ubiquitin 92.5 0.11 2.3E-06 47.6 3.0 48 33-80 333-383 (394)
91 PF05883 Baculo_RING: Baculovi 92.4 0.06 1.3E-06 42.2 1.1 36 34-71 26-69 (134)
92 PF02891 zf-MIZ: MIZ/SP-RING z 92.3 0.11 2.3E-06 33.8 2.1 44 35-80 3-50 (50)
93 KOG2932 E3 ubiquitin ligase in 92.1 0.066 1.4E-06 47.5 1.2 44 35-82 91-134 (389)
94 KOG0298 DEAD box-containing he 92.1 0.031 6.6E-07 57.8 -1.0 50 32-83 1151-1200(1394)
95 PF03854 zf-P11: P-11 zinc fin 91.7 0.058 1.2E-06 34.5 0.3 44 36-84 4-48 (50)
96 KOG4362 Transcriptional regula 91.5 0.053 1.2E-06 53.0 -0.1 48 33-83 20-70 (684)
97 PF12906 RINGv: RING-variant d 91.4 0.12 2.6E-06 33.0 1.5 40 37-77 1-47 (47)
98 PF08746 zf-RING-like: RING-li 91.3 0.095 2.1E-06 32.9 0.9 41 37-77 1-43 (43)
99 KOG3161 Predicted E3 ubiquitin 90.0 0.1 2.2E-06 50.6 0.3 47 33-82 10-57 (861)
100 KOG3268 Predicted E3 ubiquitin 89.7 0.2 4.4E-06 41.1 1.8 52 32-83 163-229 (234)
101 PF10272 Tmpp129: Putative tra 89.6 0.42 9E-06 43.7 3.9 52 30-84 267-353 (358)
102 KOG3579 Predicted E3 ubiquitin 88.4 0.22 4.8E-06 43.7 1.2 36 33-71 267-306 (352)
103 KOG1952 Transcription factor N 88.3 0.26 5.7E-06 49.1 1.8 50 32-82 189-247 (950)
104 KOG1100 Predicted E3 ubiquitin 88.0 0.23 5E-06 42.0 1.1 40 37-83 161-201 (207)
105 KOG3002 Zn finger protein [Gen 88.0 0.36 7.7E-06 43.2 2.3 46 31-83 45-92 (299)
106 KOG1812 Predicted E3 ubiquitin 87.9 0.24 5.2E-06 45.9 1.2 38 33-70 145-183 (384)
107 KOG2034 Vacuolar sorting prote 84.9 0.44 9.6E-06 47.8 1.4 35 32-67 815-849 (911)
108 KOG0825 PHD Zn-finger protein 83.7 0.53 1.2E-05 46.8 1.3 56 30-85 92-157 (1134)
109 KOG3039 Uncharacterized conser 81.1 1 2.3E-05 38.9 2.0 33 33-68 42-74 (303)
110 COG5109 Uncharacterized conser 79.9 1.4 3E-05 39.4 2.4 47 33-79 335-384 (396)
111 COG5183 SSM4 Protein involved 79.4 1.6 3.5E-05 43.7 2.9 52 32-84 10-68 (1175)
112 PF01480 PWI: PWI domain; Int 77.7 0.28 6E-06 34.7 -2.1 29 201-229 2-32 (77)
113 KOG3053 Uncharacterized conser 76.4 1 2.3E-05 39.0 0.6 55 31-85 17-85 (293)
114 PLN02189 cellulose synthase 76.4 2.7 5.9E-05 43.4 3.6 51 33-83 33-88 (1040)
115 PLN02436 cellulose synthase A 73.6 3.8 8.3E-05 42.5 3.9 51 33-83 35-90 (1094)
116 PF14569 zf-UDP: Zinc-binding 73.5 3.2 6.8E-05 29.4 2.3 51 33-83 8-63 (80)
117 KOG3113 Uncharacterized conser 73.2 3.4 7.4E-05 35.9 2.9 51 33-85 110-161 (293)
118 KOG3899 Uncharacterized conser 73.2 1.7 3.7E-05 38.4 1.2 30 55-84 325-367 (381)
119 KOG0309 Conserved WD40 repeat- 73.1 2.1 4.5E-05 42.6 1.8 42 34-76 1028-1069(1081)
120 KOG0801 Predicted E3 ubiquitin 72.5 1.2 2.6E-05 36.0 0.1 28 33-60 176-203 (205)
121 KOG4430 Topoisomerase I-bindin 71.7 3.9 8.4E-05 39.4 3.2 74 152-225 191-271 (553)
122 PF14446 Prok-RING_1: Prokaryo 71.4 4.8 0.0001 26.5 2.7 34 33-66 4-38 (54)
123 KOG2068 MOT2 transcription fac 69.8 3.7 8E-05 37.0 2.5 49 34-82 249-298 (327)
124 KOG1812 Predicted E3 ubiquitin 68.9 2.6 5.7E-05 39.0 1.5 46 34-79 306-353 (384)
125 KOG2807 RNA polymerase II tran 66.9 4.7 0.0001 36.3 2.5 56 23-78 319-374 (378)
126 KOG4718 Non-SMC (structural ma 65.5 4.2 9.1E-05 34.4 1.9 49 33-83 180-228 (235)
127 TIGR00622 ssl1 transcription f 64.7 5.9 0.00013 30.2 2.4 45 34-78 55-110 (112)
128 KOG1815 Predicted E3 ubiquitin 64.4 3.7 8E-05 38.7 1.5 51 32-84 68-128 (444)
129 PLN02638 cellulose synthase A 63.3 6 0.00013 41.1 2.8 51 33-83 16-71 (1079)
130 KOG2113 Predicted RNA binding 62.0 7.2 0.00016 35.0 2.8 44 33-81 342-386 (394)
131 PF07975 C1_4: TFIIH C1-like d 61.4 6.7 0.00015 25.5 1.9 42 37-78 2-50 (51)
132 PLN02400 cellulose synthase 60.5 8.7 0.00019 40.0 3.4 51 33-83 35-90 (1085)
133 PLN02915 cellulose synthase A 58.8 9.9 0.00021 39.5 3.5 51 33-83 14-69 (1044)
134 PLN02195 cellulose synthase A 56.4 12 0.00026 38.6 3.6 50 33-82 5-59 (977)
135 PF06906 DUF1272: Protein of u 54.1 17 0.00036 24.1 2.8 47 34-83 5-53 (57)
136 KOG0269 WD40 repeat-containing 53.8 13 0.00028 37.2 3.2 48 34-82 779-828 (839)
137 KOG2169 Zn-finger transcriptio 52.7 8.9 0.00019 38.0 2.0 51 34-86 306-360 (636)
138 PF10571 UPF0547: Uncharacteri 51.4 3.6 7.7E-05 22.9 -0.6 10 72-81 15-24 (26)
139 PLN02248 cellulose synthase-li 50.0 16 0.00034 38.4 3.2 32 54-85 149-180 (1135)
140 KOG0824 Predicted E3 ubiquitin 49.4 4.8 0.0001 35.9 -0.4 52 32-85 103-154 (324)
141 PF07191 zinc-ribbons_6: zinc- 48.3 1 2.2E-05 31.3 -3.8 42 34-83 1-42 (70)
142 KOG0827 Predicted E3 ubiquitin 46.8 1.1 2.4E-05 41.1 -4.9 50 34-83 196-246 (465)
143 PF04423 Rad50_zn_hook: Rad50 46.4 7.7 0.00017 25.2 0.3 12 72-83 21-32 (54)
144 PF13901 DUF4206: Domain of un 45.8 17 0.00036 30.5 2.3 42 33-79 151-197 (202)
145 PF05605 zf-Di19: Drought indu 45.4 9.5 0.00021 24.7 0.6 38 33-80 1-40 (54)
146 TIGR01562 FdhE formate dehydro 45.0 5.3 0.00011 35.9 -0.8 45 33-80 183-233 (305)
147 KOG1609 Protein involved in mR 44.1 12 0.00026 32.9 1.3 51 34-84 78-136 (323)
148 PF04216 FdhE: Protein involve 43.5 3.9 8.5E-05 36.2 -1.9 47 33-82 171-222 (290)
149 COG0068 HypF Hydrogenase matur 42.5 16 0.00034 36.5 1.9 53 32-84 99-186 (750)
150 KOG2979 Protein involved in DN 42.3 13 0.00028 32.4 1.2 45 34-80 176-222 (262)
151 smart00311 PWI PWI, domain in 41.2 3.7 8.1E-05 28.7 -1.9 29 200-228 6-36 (74)
152 smart00647 IBR In Between Ring 40.4 4.5 9.7E-05 26.7 -1.6 16 54-69 45-60 (64)
153 PRK03564 formate dehydrogenase 40.0 9.7 0.00021 34.3 0.0 45 33-79 186-234 (309)
154 PF13240 zinc_ribbon_2: zinc-r 39.9 5.5 0.00012 21.4 -1.0 6 74-79 16-21 (23)
155 KOG3799 Rab3 effector RIM1 and 39.3 12 0.00026 29.4 0.5 22 30-58 61-83 (169)
156 KOG1829 Uncharacterized conser 38.8 11 0.00025 36.6 0.3 44 33-79 510-558 (580)
157 PF06844 DUF1244: Protein of u 38.6 17 0.00038 24.9 1.1 12 58-69 11-22 (68)
158 KOG2066 Vacuolar assembly/sort 38.4 11 0.00024 37.8 0.2 36 33-68 783-822 (846)
159 KOG2231 Predicted E3 ubiquitin 37.5 25 0.00054 34.9 2.4 47 36-85 2-55 (669)
160 PF10146 zf-C4H2: Zinc finger- 36.7 26 0.00057 30.1 2.2 26 59-84 196-221 (230)
161 KOG2807 RNA polymerase II tran 36.7 9.1 0.0002 34.5 -0.6 34 50-83 323-357 (378)
162 PF14353 CpXC: CpXC protein 36.3 35 0.00075 26.1 2.7 46 35-83 2-50 (128)
163 smart00064 FYVE Protein presen 33.8 41 0.00089 22.5 2.4 35 33-67 9-44 (68)
164 KOG4451 Uncharacterized conser 32.6 30 0.00065 29.7 1.8 26 59-84 251-276 (286)
165 smart00249 PHD PHD zinc finger 31.1 31 0.00066 20.5 1.3 31 36-66 1-31 (47)
166 smart00132 LIM Zinc-binding do 30.5 57 0.0012 18.5 2.4 37 36-81 1-37 (39)
167 PRK11595 DNA utilization prote 30.3 44 0.00095 28.4 2.5 39 35-81 6-44 (227)
168 KOG4185 Predicted E3 ubiquitin 29.7 8.8 0.00019 33.9 -1.9 47 34-80 207-265 (296)
169 PF00628 PHD: PHD-finger; Int 29.1 18 0.0004 22.7 0.0 31 36-66 1-31 (51)
170 cd00065 FYVE FYVE domain; Zinc 28.4 45 0.00097 21.3 1.8 33 35-67 3-36 (57)
171 PF01363 FYVE: FYVE zinc finge 28.2 16 0.00035 24.7 -0.4 35 32-66 7-42 (69)
172 PF10497 zf-4CXXC_R1: Zinc-fin 27.4 67 0.0015 24.0 2.8 49 33-82 6-72 (105)
173 COG3813 Uncharacterized protei 26.6 54 0.0012 23.0 1.9 46 36-84 7-54 (84)
174 KOG2857 Predicted MYND Zn-fing 26.2 35 0.00076 27.1 1.1 14 71-84 17-30 (157)
175 KOG3005 GIY-YIG type nuclease 25.9 38 0.00082 29.8 1.4 46 35-81 183-242 (276)
176 TIGR00143 hypF [NiFe] hydrogen 25.9 40 0.00087 33.9 1.7 51 33-83 67-152 (711)
177 PRK04023 DNA polymerase II lar 25.6 53 0.0012 34.3 2.5 162 32-218 624-818 (1121)
178 PF10235 Cript: Microtubule-as 25.6 54 0.0012 24.0 1.9 37 34-82 44-80 (90)
179 KOG0802 E3 ubiquitin ligase [P 25.2 47 0.001 32.2 2.1 45 32-83 477-521 (543)
180 PF14169 YdjO: Cold-inducible 24.7 43 0.00093 22.5 1.2 13 71-83 39-51 (59)
181 cd00350 rubredoxin_like Rubred 23.5 39 0.00085 19.5 0.7 10 71-80 17-26 (33)
182 PF04710 Pellino: Pellino; In 23.2 27 0.00059 32.4 0.0 48 33-83 276-340 (416)
183 KOG2789 Putative Zn-finger pro 22.5 42 0.00092 31.2 1.1 50 35-85 75-148 (482)
184 KOG3726 Uncharacterized conser 22.0 47 0.001 33.0 1.3 42 35-79 655-697 (717)
185 smart00734 ZnF_Rad18 Rad18-lik 21.3 47 0.001 18.2 0.7 10 73-82 3-12 (26)
186 KOG3842 Adaptor protein Pellin 21.3 91 0.002 28.3 2.8 51 33-83 340-415 (429)
187 COG3058 FdhE Uncharacterized p 21.1 50 0.0011 29.3 1.2 48 32-81 183-235 (308)
188 PF01485 IBR: IBR domain; Int 20.8 9.3 0.0002 25.0 -2.8 35 34-68 18-59 (64)
189 COG4847 Uncharacterized protei 20.7 81 0.0018 23.3 2.0 36 33-69 5-40 (103)
190 COG4647 AcxC Acetone carboxyla 20.4 59 0.0013 25.5 1.3 21 38-61 61-81 (165)
191 PF08945 Bclx_interact: Bcl-x 20.0 58 0.0013 19.8 1.0 13 202-214 15-27 (40)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.27 E-value=9.2e-13 Score=84.03 Aligned_cols=44 Identities=34% Similarity=0.980 Sum_probs=38.1
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCC
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCN 78 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr 78 (246)
+.|+||++.+.+.+..+.++|+|.||..||.+|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 46999999997655688889999999999999999999999996
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.15 E-value=2.6e-11 Score=76.51 Aligned_cols=38 Identities=42% Similarity=1.020 Sum_probs=29.9
Q ss_pred cccccccccCCCceEEccCCCcCCHHHHHHHhcCC----CCCCCC
Q 046606 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK----RNCPLC 77 (246)
Q Consensus 37 C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CPlC 77 (246)
||||++.|.+ |+.++|||+||..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 8999999999999999976543 369987
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.11 E-value=4.9e-11 Score=98.40 Aligned_cols=55 Identities=31% Similarity=0.811 Sum_probs=45.4
Q ss_pred cCCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC----------------CCCCCCCCcccccCc
Q 046606 28 ISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----------------KRNCPLCNAPFRSWF 85 (246)
Q Consensus 28 ~~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----------------~~~CPlCr~~~~~~~ 85 (246)
..+..+++.|+||++.+.+ +++++|||.||..||..|+.. ...||+|+..+....
T Consensus 12 ~~~~~~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred eccCCCccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 3444578999999999998 788999999999999999742 257999999987643
No 4
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5e-11 Score=102.97 Aligned_cols=51 Identities=33% Similarity=0.897 Sum_probs=46.0
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.......|.+||+...+ +..++|||.||+.||.+|...+..||+||..+.+
T Consensus 235 i~~a~~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSN---PSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCCceEEEecCCCC---CCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 33456899999999999 7889999999999999999999999999998865
No 5
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.08 E-value=5.4e-11 Score=77.93 Aligned_cols=48 Identities=42% Similarity=1.034 Sum_probs=41.6
Q ss_pred CCCccccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
++..|+||++...+ +++.+|||. ||..|+..|.+....||+|++.+..
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 46789999999888 899999999 9999999999989999999998753
No 6
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.08 E-value=9.4e-11 Score=100.44 Aligned_cols=54 Identities=35% Similarity=1.026 Sum_probs=45.6
Q ss_pred CCCCCccccccccccCCC-----ceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 31 AIRGQKCPICLDNLTDRR-----TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~-----~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
..++..|+||++.+.++. .+++.+|+|.||..||.+|++.+.+||+||..+...
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v 229 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEE
Confidence 346789999999987642 246779999999999999999999999999988754
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.05 E-value=8.8e-11 Score=72.90 Aligned_cols=39 Identities=51% Similarity=1.256 Sum_probs=33.6
Q ss_pred cccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCC
Q 046606 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77 (246)
Q Consensus 37 C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlC 77 (246)
|+||++.+.++ .+.++|||.||..|+..|++.+.+||.|
T Consensus 1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999992 3789999999999999999888899988
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.9e-10 Score=96.70 Aligned_cols=51 Identities=31% Similarity=0.779 Sum_probs=45.0
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC---CCCCCCCcccccC
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK---RNCPLCNAPFRSW 84 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~---~~CPlCr~~~~~~ 84 (246)
+...+.|.||||.-++ ++++.|||.||+.||-+|+... ..||+||..+...
T Consensus 44 ~~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 4568999999999999 8999999999999999999764 4599999998764
No 9
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.3e-10 Score=93.79 Aligned_cols=53 Identities=30% Similarity=0.729 Sum_probs=45.8
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
+..+.|||||+.+... +++.++|||.||..||...++...+||+|++.+..+.
T Consensus 129 ~~~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccccCCCceecchhhc-cccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 3568899999999874 4677999999999999999999999999998776543
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.00 E-value=2.6e-10 Score=77.94 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=45.2
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRIN 89 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~ 89 (246)
++.||||.+.+.+ +++++|||.||..||..|+.....||.|+..+.......+
T Consensus 1 ~~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 1 EFLCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred CcCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence 4679999999999 7889999999999999998888899999998865443333
No 11
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.00 E-value=3e-10 Score=80.32 Aligned_cols=46 Identities=33% Similarity=0.866 Sum_probs=37.2
Q ss_pred CCCccccccccccCC----------CceEEccCCCcCCHHHHHHHhcCCCCCCCCC
Q 046606 33 RGQKCPICLDNLTDR----------RTAVLKVCTHAYCLECIEKWSNLKRNCPLCN 78 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~----------~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr 78 (246)
.++.|+||++.|.++ ......+|||.||..||.+|++...+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 455699999999543 2345668999999999999999999999997
No 12
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=4.6e-10 Score=102.67 Aligned_cols=66 Identities=30% Similarity=0.602 Sum_probs=53.3
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchhhhh
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQ 97 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~~~~ 97 (246)
...+..+.|+||++.+.+ +++++|+|.||..||..|+.....||+|+..+.......+..+.++++
T Consensus 21 ~~Le~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe 86 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVE 86 (397)
T ss_pred cccccccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHH
Confidence 344578999999999998 788999999999999999988888999999988655555544444443
No 13
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8.4e-10 Score=98.81 Aligned_cols=49 Identities=29% Similarity=0.885 Sum_probs=44.0
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCC-CCCCCccccc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRN-CPLCNAPFRS 83 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~-CPlCr~~~~~ 83 (246)
+.|+||+|.+..++....++|+|.||..||..|+....+ ||+||+.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 499999999998887888999999999999999988755 9999997754
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=98.86 E-value=1.3e-09 Score=91.24 Aligned_cols=56 Identities=29% Similarity=0.863 Sum_probs=44.3
Q ss_pred CCCCCCCccccccccccCC------CceEEccCCCcCCHHHHHHHhcCC------CCCCCCCcccccC
Q 046606 29 SPAIRGQKCPICLDNLTDR------RTAVLKVCTHAYCLECIEKWSNLK------RNCPLCNAPFRSW 84 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~------~~~~~~~C~H~Fc~~Ci~~w~~~~------~~CPlCr~~~~~~ 84 (246)
...+++..|+||++.+.++ ...++.+|+|.||..||..|.+.. ..||+||..+...
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 3445789999999986442 246788999999999999998753 4599999988754
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.86 E-value=2.5e-09 Score=67.21 Aligned_cols=44 Identities=45% Similarity=1.226 Sum_probs=36.6
Q ss_pred ccccccccccCCCceEEccCCCcCCHHHHHHHhcC-CCCCCCCCccc
Q 046606 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-KRNCPLCNAPF 81 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CPlCr~~~ 81 (246)
.|+||++.+.+. ..+.+|+|.||..|+..|++. ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~--~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREP--VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCc--eEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999999552 555669999999999999887 67899998753
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.85 E-value=1.6e-09 Score=67.73 Aligned_cols=38 Identities=47% Similarity=1.274 Sum_probs=33.9
Q ss_pred cccccccccCCCceE-EccCCCcCCHHHHHHHhc--CCCCCCCC
Q 046606 37 CPICLDNLTDRRTAV-LKVCTHAYCLECIEKWSN--LKRNCPLC 77 (246)
Q Consensus 37 C~ICl~~~~~~~~~~-~~~C~H~Fc~~Ci~~w~~--~~~~CPlC 77 (246)
|+||++.+.+ +. +++|+|.||..|+..|++ ....||+|
T Consensus 1 C~iC~~~~~~---~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED---PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS---EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC---CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999998 55 999999999999999887 45679988
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.72 E-value=1.2e-08 Score=64.91 Aligned_cols=44 Identities=30% Similarity=0.923 Sum_probs=37.5
Q ss_pred ccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCc
Q 046606 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~ 79 (246)
.|+||.+.+.+...+.+++|||.||..|+..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999943345899999999999999998866778999985
No 18
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.69 E-value=1e-08 Score=72.51 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=50.3
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-CCCCCCCCcccccCcccccCCchhhhhhhh
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-KRNCPLCNAPFRSWFYRINLSSSDFLQQQL 100 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CPlCr~~~~~~~~~~~~~~~~~~~~~l 100 (246)
.+.+.|||+.+.+.+ |+++++||+|+..||..|+.. ...||+|+..+......+|..+...+.+++
T Consensus 2 P~~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 2 PDEFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWC 68 (73)
T ss_dssp SGGGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHH
T ss_pred CcccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHH
Confidence 367899999999999 899999999999999999998 788999999998876666655555555544
No 19
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-08 Score=88.96 Aligned_cols=56 Identities=25% Similarity=0.730 Sum_probs=46.9
Q ss_pred cCCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhc-CCCCCCCCCccccc
Q 046606 28 ISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN-LKRNCPLCNAPFRS 83 (246)
Q Consensus 28 ~~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CPlCr~~~~~ 83 (246)
.........|+|||+.|...+..+.+||.|.||..|+..|+. .+.+||+|+.++.+
T Consensus 317 ~~ea~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 317 AVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred HHhcCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 334456788999999987666688899999999999999987 67899999998753
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.68 E-value=1.6e-08 Score=61.24 Aligned_cols=38 Identities=47% Similarity=1.286 Sum_probs=33.6
Q ss_pred cccccccccCCCceEEccCCCcCCHHHHHHHhc-CCCCCCCC
Q 046606 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN-LKRNCPLC 77 (246)
Q Consensus 37 C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CPlC 77 (246)
|+||++...+ ++.++|+|.||..|+..|++ ....||.|
T Consensus 1 C~iC~~~~~~---~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD---PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC---cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999766 78889999999999999987 56679987
No 21
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.2e-08 Score=90.97 Aligned_cols=51 Identities=27% Similarity=0.773 Sum_probs=43.9
Q ss_pred CCCCCccccccccccCC----------CceEEccCCCcCCHHHHHHHhcCCCCCCCCCccc
Q 046606 31 AIRGQKCPICLDNLTDR----------RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~----------~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~ 81 (246)
..+|..|.||+|.+..+ ..|..++|||.+|++|+..|.+.+.+||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 45788999999995443 2367889999999999999999999999999984
No 22
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.62 E-value=3.3e-08 Score=71.14 Aligned_cols=52 Identities=29% Similarity=0.740 Sum_probs=41.4
Q ss_pred CCCCccccccccccCC----------CceEEccCCCcCCHHHHHHHhcC---CCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDR----------RTAVLKVCTHAYCLECIEKWSNL---KRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~----------~~~~~~~C~H~Fc~~Ci~~w~~~---~~~CPlCr~~~~~ 83 (246)
.+++.|.||...|... ...+.-.|+|.||..||.+|+.. +..||+||+.+..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4588999999988742 12355589999999999999875 3679999998753
No 23
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.61 E-value=8.3e-09 Score=90.94 Aligned_cols=59 Identities=25% Similarity=0.559 Sum_probs=50.7
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCch
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSS 93 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~ 93 (246)
++-+.|-||.++|.. +++++|+|+||.-||..++..++.||+|...+..-.+..+.-+.
T Consensus 21 D~lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~ 79 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILD 79 (442)
T ss_pred HHHHHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHH
Confidence 456789999999998 89999999999999999999999999999999876555554333
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.1e-08 Score=92.83 Aligned_cols=53 Identities=28% Similarity=0.630 Sum_probs=42.4
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC-----CCCCCCCcccccCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-----RNCPLCNAPFRSWFYRIN 89 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-----~~CPlCr~~~~~~~~~~~ 89 (246)
+..||||++...- +..+.|||.||..||..++... ..||+|+..+..+...+.
T Consensus 186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 7889999999877 7777899999999999944332 469999999887544333
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.7e-08 Score=84.34 Aligned_cols=50 Identities=32% Similarity=0.788 Sum_probs=44.0
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHH-HhcCCCC-CCCCCcccccC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEK-WSNLKRN-CPLCNAPFRSW 84 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~-w~~~~~~-CPlCr~~~~~~ 84 (246)
..+..|+||++.... +..++|||.||..||.. |-+.+.. ||+||+.....
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCC---cccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 468999999999988 78899999999999999 9887776 99999876543
No 26
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.47 E-value=7.3e-08 Score=83.49 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=45.8
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
+.-+.|-||.+.|.. +..++|||.||.-||...+..+..||+|+..+....
T Consensus 23 Ds~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 23 DSMLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred hhHHHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 346779999999998 899999999999999999999999999999887543
No 27
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=2e-07 Score=82.39 Aligned_cols=53 Identities=26% Similarity=0.704 Sum_probs=39.1
Q ss_pred CCCcccccccc-ccCCCc-eEEccCCCcCCHHHHHH-HhcCCCCCCCCCcccccCc
Q 046606 33 RGQKCPICLDN-LTDRRT-AVLKVCTHAYCLECIEK-WSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 33 ~~~~C~ICl~~-~~~~~~-~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~~~~~~~ 85 (246)
++..||+|... ..++.. ..+.+|||.||..|+.. |......||.|+..+....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 46789999994 223321 22337999999999999 5566678999999887654
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.46 E-value=9.6e-08 Score=60.37 Aligned_cols=38 Identities=32% Similarity=0.980 Sum_probs=22.3
Q ss_pred cccccccccCC-CceEEccCCCcCCHHHHHHHhcC----CCCCC
Q 046606 37 CPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNL----KRNCP 75 (246)
Q Consensus 37 C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CP 75 (246)
||||.+ +.+. ..|++++|||.||.+||..+++. ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 6543 45888999999999999998763 34576
No 29
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.2e-08 Score=72.90 Aligned_cols=57 Identities=30% Similarity=0.659 Sum_probs=43.8
Q ss_pred cccCCCCCCCccccccccccCC--------------CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 26 RVISPAIRGQKCPICLDNLTDR--------------RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 26 ~~~~~~~~~~~C~ICl~~~~~~--------------~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
+....+..-+.|+||...+-+. ..+.--.|.|.||+.||.+|++....||+|.+...
T Consensus 38 AlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 38 ALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 3445556788999998655432 22344589999999999999999999999988764
No 30
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.31 E-value=1.1e-07 Score=64.44 Aligned_cols=58 Identities=29% Similarity=0.658 Sum_probs=28.1
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchh
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSD 94 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~ 94 (246)
+-..|++|.+.+.++ ..+..|.|.||..||..-+. ..||+|..+--..+...|..+++
T Consensus 6 ~lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~ 63 (65)
T PF14835_consen 6 ELLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDS 63 (65)
T ss_dssp HTTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHH
T ss_pred HhcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhc
Confidence 356799999999994 45789999999999977443 45999998876655555544443
No 31
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.2e-07 Score=89.90 Aligned_cols=51 Identities=35% Similarity=0.768 Sum_probs=43.9
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHh-cCCCCCCCCCcccccCcc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWS-NLKRNCPLCNAPFRSWFY 86 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~-~~~~~CPlCr~~~~~~~~ 86 (246)
.-..|++|-....+ .+++.|+|.||..|+...+ ....+||.|.+.|+.-++
T Consensus 642 ~~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred hceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 35789999999998 8899999999999999955 456889999999987543
No 32
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.23 E-value=7e-07 Score=62.86 Aligned_cols=52 Identities=31% Similarity=0.642 Sum_probs=40.5
Q ss_pred CCCCccccccccccCC-------------CceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDR-------------RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-------------~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..-+.|.||...+.+. ...+.-.|.|.||..||.+|+..+..||++++.+..
T Consensus 18 i~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 18 IPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 3456788887766542 224455899999999999999999999999998754
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.2e-07 Score=87.34 Aligned_cols=51 Identities=25% Similarity=0.671 Sum_probs=43.7
Q ss_pred CCCCccccccccccCC--CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 32 IRGQKCPICLDNLTDR--RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~--~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
..+..|+||+|.+... ..+..++|+|.||..|+..|++.+.+||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 3588999999999873 12577899999999999999999999999999443
No 34
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.6e-07 Score=61.37 Aligned_cols=48 Identities=33% Similarity=0.830 Sum_probs=41.2
Q ss_pred CCccccccccccCCCceEEccCCCc-CCHHHHHH-HhcCCCCCCCCCcccccC
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEK-WSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~-w~~~~~~CPlCr~~~~~~ 84 (246)
++.|.||++...+ .++..|||. +|++|-.+ |-..+..||+||+++...
T Consensus 7 ~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 7 SDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV 56 (62)
T ss_pred ccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence 4789999999888 788899997 99999998 555778899999988653
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.4e-07 Score=78.28 Aligned_cols=46 Identities=30% Similarity=0.808 Sum_probs=40.4
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~ 79 (246)
..+...|+||++.|.+ +.+++|+|+||..|+..+......||.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~---p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFRE---PVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhc---CccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3578899999999999 688899999999999996666677999994
No 36
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.1e-07 Score=82.71 Aligned_cols=69 Identities=28% Similarity=0.526 Sum_probs=50.6
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhc-CCCCCCCCCcccccC-cccccCCchhhhhhhhcC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN-LKRNCPLCNAPFRSW-FYRINLSSSDFLQQQLQP 102 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CPlCr~~~~~~-~~~~~~~~~~~~~~~lp~ 102 (246)
..++.|+|||+.+... ..+..|.|.||++||..-+. ....||.||+.+.+. .+..+.....++.+..+.
T Consensus 41 ~~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred hhhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 4688999999999982 33446999999999988554 467899999998764 344554455555555444
No 37
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.04 E-value=6.7e-07 Score=78.95 Aligned_cols=75 Identities=21% Similarity=0.484 Sum_probs=60.2
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc----ccccCCchhhhhhhhcCCCCC
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF----YRINLSSSDFLQQQLQPLIKD 106 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~----~~~~~~~~~~~~~~lp~~~~~ 106 (246)
......|.+|..+|.+. ..+..|.|+||..||...+.....||.|...+.... +..+..+++++...+|++.+.
T Consensus 12 ~n~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~er 89 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQER 89 (331)
T ss_pred cccceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHH
Confidence 34678899999999994 666789999999999999888999999999887653 344456677777778887654
Q ss_pred C
Q 046606 107 K 107 (246)
Q Consensus 107 ~ 107 (246)
+
T Consensus 90 E 90 (331)
T KOG2660|consen 90 E 90 (331)
T ss_pred H
Confidence 3
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.6e-06 Score=75.20 Aligned_cols=50 Identities=32% Similarity=0.802 Sum_probs=44.0
Q ss_pred CCCCccccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
+....|.|||....+ .+++||.|. .|..|.+...-....||+||+.+...
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 346789999999999 899999998 99999999876778899999998753
No 39
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.3e-06 Score=72.45 Aligned_cols=52 Identities=27% Similarity=0.612 Sum_probs=42.9
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-CCCCCCCCcccccCc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-KRNCPLCNAPFRSWF 85 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CPlCr~~~~~~~ 85 (246)
..-+..|+||+....- ++.+.|+|.||+.||..-... ...|++|+.++.+.+
T Consensus 4 ~~~~~eC~IC~nt~n~---Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 4 RTKKKECLICYNTGNC---PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cccCCcceeeeccCCc---CccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 3456789999999877 788999999999999995554 456999999998743
No 40
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=9.5e-06 Score=69.87 Aligned_cols=60 Identities=18% Similarity=0.474 Sum_probs=45.9
Q ss_pred ccCCCCCCCccccccccccCC-------CceEEccCCCcCCHHHHHHHhc--CCCCCCCCCcccccCcc
Q 046606 27 VISPAIRGQKCPICLDNLTDR-------RTAVLKVCTHAYCLECIEKWSN--LKRNCPLCNAPFRSWFY 86 (246)
Q Consensus 27 ~~~~~~~~~~C~ICl~~~~~~-------~~~~~~~C~H~Fc~~Ci~~w~~--~~~~CPlCr~~~~~~~~ 86 (246)
.+....++..|.||-..+... +....+.|+|.||..||..|-- .+.+||-||..+.....
T Consensus 217 lPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 217 LPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred CCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence 344445788899999887653 1356789999999999999954 45779999998875443
No 41
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2e-05 Score=72.50 Aligned_cols=49 Identities=29% Similarity=0.772 Sum_probs=44.7
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..++.|.||+..+.+ ++.++|||.||..||.+-+.....||+|+..+..
T Consensus 82 ~sef~c~vc~~~l~~---pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC---CccccccccccHHHHHHHhccCCCCccccccccc
Confidence 568999999999999 7888999999999999988888899999999875
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2e-05 Score=71.13 Aligned_cols=56 Identities=29% Similarity=0.874 Sum_probs=44.3
Q ss_pred CCCCCCccccccccccCCC-----ceEEccCCCcCCHHHHHHHhc--C-----CCCCCCCCcccccCc
Q 046606 30 PAIRGQKCPICLDNLTDRR-----TAVLKVCTHAYCLECIEKWSN--L-----KRNCPLCNAPFRSWF 85 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~-----~~~~~~C~H~Fc~~Ci~~w~~--~-----~~~CPlCr~~~~~~~ 85 (246)
....+..|.||++.+.++. ..++.+|.|.||..||..|.+ . ...||.||.......
T Consensus 157 ~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 157 QKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred CccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 3357899999999988753 345578999999999999984 3 367999998776543
No 43
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.64 E-value=2.8e-05 Score=52.19 Aligned_cols=44 Identities=30% Similarity=0.593 Sum_probs=29.2
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC--CCCCCC
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL--KRNCPL 76 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--~~~CPl 76 (246)
....+.|||.+..|.+| .....|+|.|....|.+|++. ...||.
T Consensus 8 ~~~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34578999999999994 344589999999999999943 456998
No 44
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.60 E-value=1.1e-05 Score=56.51 Aligned_cols=50 Identities=24% Similarity=0.642 Sum_probs=23.7
Q ss_pred CCcccccccccc-CCCceEE----ccCCCcCCHHHHHHHhcC---C--------CCCCCCCccccc
Q 046606 34 GQKCPICLDNLT-DRRTAVL----KVCTHAYCLECIEKWSNL---K--------RNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~-~~~~~~~----~~C~H~Fc~~Ci~~w~~~---~--------~~CPlCr~~~~~ 83 (246)
+..|.||...+. +.+.+.+ ..|+..||..||.+|+.. . ..||.|++++.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 567999999865 3222222 279999999999999753 1 249999998753
No 45
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.7e-05 Score=72.10 Aligned_cols=51 Identities=31% Similarity=0.853 Sum_probs=39.7
Q ss_pred CCCccccccccccCC--------------CceEEccCCCcCCHHHHHHHhc-CCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDR--------------RTAVLKVCTHAYCLECIEKWSN-LKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~--------------~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CPlCr~~~~~ 83 (246)
....|+|||..+.-. .--+++||.|.||..|+..|+. .+..||.|+.++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 356799999876431 1135669999999999999998 56689999998753
No 46
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=1.1e-05 Score=56.32 Aligned_cols=52 Identities=29% Similarity=0.712 Sum_probs=38.8
Q ss_pred CCCCCccccccccccCC---------Cce-EEccCCCcCCHHHHHHHhcC---CCCCCCCCcccc
Q 046606 31 AIRGQKCPICLDNLTDR---------RTA-VLKVCTHAYCLECIEKWSNL---KRNCPLCNAPFR 82 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~---------~~~-~~~~C~H~Fc~~Ci~~w~~~---~~~CPlCr~~~~ 82 (246)
...++.|-||.-.|... +-| +.-.|.|.||..||.+|+.. +..||+||+.+.
T Consensus 17 ~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 17 DAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34566899999888642 112 33379999999999999865 356999999875
No 47
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=6.7e-05 Score=64.91 Aligned_cols=51 Identities=29% Similarity=0.664 Sum_probs=41.0
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhc--CCCCCCCCCcccccC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN--LKRNCPLCNAPFRSW 84 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~--~~~~CPlCr~~~~~~ 84 (246)
..+..|++|-+....| -+..+|+|.||+.|+..-.. ....||.|.......
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 4678899999998885 45567999999999998543 357899999887643
No 48
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.54 E-value=6.5e-05 Score=48.81 Aligned_cols=42 Identities=29% Similarity=0.775 Sum_probs=31.8
Q ss_pred ccccccccccCCCceEEccCC-----CcCCHHHHHHHhcCC--CCCCCCC
Q 046606 36 KCPICLDNLTDRRTAVLKVCT-----HAYCLECIEKWSNLK--RNCPLCN 78 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~-----H~Fc~~Ci~~w~~~~--~~CPlCr 78 (246)
.|-||++... +..+...||. |.+|..|+..|+..+ ..||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998322 2336778885 779999999998654 4799995
No 49
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=97.54 E-value=1.2e-05 Score=75.86 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHhcCCEEEeCCCCCcccccCCCCCCC-CchhhhhhhhhhhhhhhhhcCCCCc
Q 046606 158 VSERKLRWRASVYNAGFQAVPLSPRRCLGQNASGNNFV-KGRLVQRIDPWIRRELQALLGGPRS 220 (246)
Q Consensus 158 ~~~~~l~~Rr~vY~~~L~~~~~~s~~~~~~~i~~~~~~-~p~~~~Rl~~Wl~REL~v~~~~~~~ 220 (246)
..+++..+|+.+|+.+|++....+..++++ .+..+++ ||.++|||.+|++|||.++++++++
T Consensus 18 ~~q~iv~~rr~vy~~~l~s~~~~~~g~fr~-~s~~~~r~np~~ihr~~~W~~r~i~~l~~t~~s 80 (553)
T KOG4430|consen 18 KEQDIVLGRRYVYDISLYSLPYPESGRFRR-ESREIFRFNPFCIHRLMQWKKRDISVLNRTRGS 80 (553)
T ss_pred cchhccCcceeEecccccCCCcccccchhc-cchhhhccChhhhcccccchhhHHHHHhhhccc
Confidence 345667779999999999998888878776 5666666 8999999999999999999999997
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.45 E-value=2.2e-05 Score=76.15 Aligned_cols=53 Identities=28% Similarity=0.649 Sum_probs=43.1
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
....|++|+..+.+.....-.+|+|.||..||..|.....+||+|+..|..+.
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 45668888877766433444589999999999999999999999999998754
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.45 E-value=6.4e-05 Score=68.98 Aligned_cols=52 Identities=23% Similarity=0.714 Sum_probs=39.4
Q ss_pred CCCCCCCccccccccccCCC-ceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 29 SPAIRGQKCPICLDNLTDRR-TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~-~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
....+-.+|||||+.+.... -.+...|.|.||-.|+..|.. .+||+||..-.
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 33456788999999998741 125668999999999999875 56888876544
No 52
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.38 E-value=5.3e-05 Score=62.59 Aligned_cols=47 Identities=21% Similarity=0.542 Sum_probs=41.7
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.+.|-||...+.. ++++.|||.||..|...-.+....|-+|.+....
T Consensus 196 PF~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 4689999999998 8999999999999999988888999999876543
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.35 E-value=8.2e-05 Score=68.82 Aligned_cols=51 Identities=27% Similarity=0.702 Sum_probs=44.6
Q ss_pred CCCCCccccccccccCCCceEE-ccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 31 AIRGQKCPICLDNLTDRRTAVL-KVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~-~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
.+++..|++|...+.+ ++. +.|||.||..|+..|...+..||.|+......
T Consensus 18 ~~~~l~C~~C~~vl~~---p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRD---PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred CcccccCccccccccC---CCCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 4578999999999999 566 59999999999999999999999998776543
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00011 Score=64.31 Aligned_cols=48 Identities=25% Similarity=0.483 Sum_probs=42.6
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
.+.|-||...|.+ ++.+.|+|.||..|...-++....|++|.+.....
T Consensus 241 Pf~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred Ccccccccccccc---chhhcCCceeehhhhccccccCCcceecccccccc
Confidence 5679999999999 89999999999999988888888999999877653
No 55
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00021 Score=64.63 Aligned_cols=50 Identities=24% Similarity=0.761 Sum_probs=37.3
Q ss_pred CCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCC---CCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLK---RNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~---~~CPlCr~~~~~ 83 (246)
...|.||.+.+.+. ++.-+..|||.||..|+..|+... ..||+|+-.+..
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 35699997766543 344455699999999999999863 479999955544
No 56
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00045 Score=61.86 Aligned_cols=50 Identities=26% Similarity=0.625 Sum_probs=44.3
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
+.+|..||||...-.+ ++..+|+|.-|+.||.+-+-+.+.|=-||+.+..
T Consensus 419 ~sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3688999999998777 7889999999999999988888899999988764
No 57
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0006 Score=62.07 Aligned_cols=50 Identities=42% Similarity=0.890 Sum_probs=38.5
Q ss_pred CCCccccccccccCC--CceEEccCCCcCCHHHHHHHhcCC--CCCCCCCcccc
Q 046606 33 RGQKCPICLDNLTDR--RTAVLKVCTHAYCLECIEKWSNLK--RNCPLCNAPFR 82 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~--~~~~~~~C~H~Fc~~Ci~~w~~~~--~~CPlCr~~~~ 82 (246)
....||||+|.+.-+ .-.+.+.|||.|-..||..|+..+ ..||+|+..-.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 467899999987654 224567899999999999999532 45999975543
No 58
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.85 E-value=0.0011 Score=42.73 Aligned_cols=46 Identities=24% Similarity=0.690 Sum_probs=22.6
Q ss_pred cccccccccCCCceEE-ccCCCcCCHHHHHHHhc-CCCCCCCCCcccc
Q 046606 37 CPICLDNLTDRRTAVL-KVCTHAYCLECIEKWSN-LKRNCPLCNAPFR 82 (246)
Q Consensus 37 C~ICl~~~~~~~~~~~-~~C~H~Fc~~Ci~~w~~-~~~~CPlCr~~~~ 82 (246)
||+|.+.+......+. =+|++..|..|+....+ ....||-||++|.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 7899998854322222 26899999999999776 5788999999863
No 59
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.0016 Score=55.77 Aligned_cols=54 Identities=28% Similarity=0.442 Sum_probs=46.3
Q ss_pred CCCCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 32 IRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
+..+.||||.+.|.|. .-+++.+|||.||.+|+.........||+|..++....
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 3678899999999985 23567799999999999999999999999998887654
No 60
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.63 E-value=0.00062 Score=67.71 Aligned_cols=53 Identities=28% Similarity=0.680 Sum_probs=39.4
Q ss_pred CCCCCCcccccccccc--CCCc--eEEccCCCcCCHHHHHHHhcCC--CCCCCCCcccc
Q 046606 30 PAIRGQKCPICLDNLT--DRRT--AVLKVCTHAYCLECIEKWSNLK--RNCPLCNAPFR 82 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~--~~~~--~~~~~C~H~Fc~~Ci~~w~~~~--~~CPlCr~~~~ 82 (246)
.-+....|+||...+. +... -....|.|.||..|+-.|+..+ ..||+||..+.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3456788999998765 2111 2334799999999999998764 57999997664
No 61
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.58 E-value=0.00082 Score=61.09 Aligned_cols=48 Identities=27% Similarity=0.805 Sum_probs=40.8
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcC--CCCCCCCCcccccC
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL--KRNCPLCNAPFRSW 84 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--~~~CPlCr~~~~~~ 84 (246)
-..|.||-+.-++ ..+-+|||..|..|+..|... ...||-|+..+...
T Consensus 369 FeLCKICaendKd---vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 369 FELCKICAENDKD---VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHHhhccCCC---cccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 4569999998887 778899999999999999754 47899999988754
No 62
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0004 Score=60.64 Aligned_cols=43 Identities=30% Similarity=0.794 Sum_probs=36.5
Q ss_pred CCccccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
+..|.||+|...+ .+.++|||. -|..|-..+ ..||+||+.+..
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence 7789999999998 999999996 899996554 379999987653
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.54 E-value=0.001 Score=58.38 Aligned_cols=43 Identities=33% Similarity=0.767 Sum_probs=36.4
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHH-HhcCCCCCCCCCc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEK-WSNLKRNCPLCNA 79 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~ 79 (246)
+.|+.|...+.++ ..+..|+|.||.+||.. .+.....||.|-.
T Consensus 275 LkCplc~~Llrnp--~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP--MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc--ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 8899999999994 33347999999999998 5677899999976
No 64
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.54 E-value=0.0033 Score=55.02 Aligned_cols=54 Identities=17% Similarity=0.481 Sum_probs=44.0
Q ss_pred CCCCCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 31 AIRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
....+.|||....|... .++.+.+|||.|+..+|.+.- ....||+|..+|....
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 45678999999999543 456777999999999999984 4567999999998654
No 65
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0026 Score=53.76 Aligned_cols=54 Identities=19% Similarity=0.477 Sum_probs=43.4
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC--------CCCCCCCCccccc
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL--------KRNCPLCNAPFRS 83 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--------~~~CPlCr~~~~~ 83 (246)
.+.+-+..|.+|-..+..++ .+-+.|-|.||..|+.+|... ...||.|...+-.
T Consensus 45 ~DsDY~pNC~LC~t~La~gd-t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 45 QDSDYNPNCRLCNTPLASGD-TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred hhcCCCCCCceeCCccccCc-ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 34456788999999998764 677889999999999999754 2579999987754
No 66
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.48 E-value=0.003 Score=56.58 Aligned_cols=53 Identities=23% Similarity=0.563 Sum_probs=43.7
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHH--hcCCCCCCCCCcccccCc
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKW--SNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w--~~~~~~CPlCr~~~~~~~ 85 (246)
.++++..|.||-+.+.- ..++||+|..|--|..+. +-....||+|++......
T Consensus 57 tDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 57 TDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 34567789999999988 788999999999999873 556788999999877643
No 67
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.37 E-value=0.0007 Score=59.37 Aligned_cols=52 Identities=19% Similarity=0.587 Sum_probs=41.8
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-----------------------CCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-----------------------KRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-----------------------~~~CPlCr~~~~~ 83 (246)
...-.|.|||--|.++..-+.+.|.|.||+.|+.++++. ...||+|+..+..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 356779999999988765677899999999999887651 1359999988764
No 68
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0018 Score=58.19 Aligned_cols=49 Identities=29% Similarity=0.626 Sum_probs=37.1
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
......+.|.||++...+ .+..+|||.-| |..-. +...+||+|++.+..
T Consensus 300 ~~~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred cccCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 344567889999999999 89999999855 65443 334559999987754
No 69
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0036 Score=55.63 Aligned_cols=51 Identities=25% Similarity=0.571 Sum_probs=41.8
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccc
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~ 81 (246)
....+...||||+....|+ .++..-|-.||+.|+..+......||+-..+.
T Consensus 295 ~l~~~~~~CpvClk~r~Np--tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNP--TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred cCCCccccChhHHhccCCC--ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3334678899999999996 66667799999999999999889999765543
No 70
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.13 E-value=0.003 Score=53.96 Aligned_cols=62 Identities=23% Similarity=0.515 Sum_probs=40.2
Q ss_pred ccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchhhhhhhhc
Q 046606 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQQQLQ 101 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~~~~~~lp 101 (246)
.|-.|.-.-. +..-.++.|+|.||..|...-.. ..||+|++.+....+..+ ...++..+.-+
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l~~s-lp~~ik~~F~d 66 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQLNRS-LPTDIKSYFAD 66 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCCc--cccccccceeeeeecccc-cchhHHHHccC
Confidence 4665654433 33367889999999999754322 289999999876665555 44444444433
No 71
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.10 E-value=0.0019 Score=60.68 Aligned_cols=48 Identities=25% Similarity=0.715 Sum_probs=39.9
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-----CCCCCCCCcccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-----KRNCPLCNAPFR 82 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-----~~~CPlCr~~~~ 82 (246)
..+..|-+|.+.-++ ++...|.|.||..|+.++... .-+||.|-..+.
T Consensus 534 k~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 456789999999998 889999999999999887542 357999977665
No 72
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.82 E-value=0.0056 Score=63.53 Aligned_cols=56 Identities=20% Similarity=0.521 Sum_probs=40.5
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-----C-----CCCCCCCcccccC
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-----K-----RNCPLCNAPFRSW 84 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-----~-----~~CPlCr~~~~~~ 84 (246)
...+.|+.|.||...--..-.++.+.|+|.||+.|....+.+ . ..||+|+..+...
T Consensus 3481 tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3481 TKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 345678999999875322223788899999999998664443 2 3699999988653
No 73
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=95.82 E-value=0.0024 Score=56.06 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=42.5
Q ss_pred CCCCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 32 IRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
.....||||.+.+... ..+..++|||..++.|+.+.......||+|.+ +....
T Consensus 156 ~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 156 SSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred cccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHH
Confidence 3456699999987665 35777899999999999998777799999999 65543
No 74
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.81 E-value=0.0094 Score=47.84 Aligned_cols=34 Identities=26% Similarity=0.804 Sum_probs=25.0
Q ss_pred CCCccccccccccCCCceEEccCC------------Cc-CCHHHHHHHhc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCT------------HA-YCLECIEKWSN 69 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~------------H~-Fc~~Ci~~w~~ 69 (246)
++..|||||+...| +|++.|. -. -|..|+.++-+
T Consensus 1 ed~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 47789999999999 7888663 22 26678877643
No 75
>PHA03096 p28-like protein; Provisional
Probab=95.29 E-value=0.0072 Score=53.49 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=33.3
Q ss_pred CccccccccccCC-----CceEEccCCCcCCHHHHHHHhcCC---CCCCCCCc
Q 046606 35 QKCPICLDNLTDR-----RTAVLKVCTHAYCLECIEKWSNLK---RNCPLCNA 79 (246)
Q Consensus 35 ~~C~ICl~~~~~~-----~~~~~~~C~H~Fc~~Ci~~w~~~~---~~CPlCr~ 79 (246)
-.|.||++..... ...++..|.|.||..|+..|.... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6799999987643 346677999999999999997653 33444443
No 76
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.02 Score=50.27 Aligned_cols=53 Identities=25% Similarity=0.651 Sum_probs=38.5
Q ss_pred cccccccc-ccCCC-ceEEccCCCcCCHHHHHHH-hcCCCCCCCCCcccccCcccc
Q 046606 36 KCPICLDN-LTDRR-TAVLKVCTHAYCLECIEKW-SNLKRNCPLCNAPFRSWFYRI 88 (246)
Q Consensus 36 ~C~ICl~~-~~~~~-~~~~~~C~H~Fc~~Ci~~w-~~~~~~CPlCr~~~~~~~~~~ 88 (246)
.||+|... +.++. +....+|+|..|..|+... ......||-|...+....+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccch
Confidence 59999864 44442 3344589999999999995 456678999998887654433
No 77
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.00 E-value=0.014 Score=52.27 Aligned_cols=55 Identities=18% Similarity=0.468 Sum_probs=38.7
Q ss_pred CCCCCccccccccccCCCc-eEEccCCCcCCHHHHHHHhc-CCCCCCCCCcccccCc
Q 046606 31 AIRGQKCPICLDNLTDRRT-AVLKVCTHAYCLECIEKWSN-LKRNCPLCNAPFRSWF 85 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~-~~~~~C~H~Fc~~Ci~~w~~-~~~~CPlCr~~~~~~~ 85 (246)
.++++.||+|++.+...+. -.--+||-..|.-|+...-+ ....||.|+..+....
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 4567779999998754311 22237888889999776433 3578999999987653
No 78
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.016 Score=57.50 Aligned_cols=46 Identities=30% Similarity=0.679 Sum_probs=38.3
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...+|..|-..+.-| .+...|||.||.+|+. .....||.|+..+..
T Consensus 839 q~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPELRG 884 (933)
T ss_pred eeeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhhhh
Confidence 346899999999987 7778999999999998 556789999985543
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.37 E-value=0.019 Score=37.86 Aligned_cols=46 Identities=28% Similarity=0.582 Sum_probs=34.0
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
....|..|...-.. .++++|+|..|..|..-+ .-+.||.|.+++..
T Consensus 6 ~~~~~~~~~~~~~~---~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK---GTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccc---cccccccceeeccccChh--hccCCCCCCCcccC
Confidence 45567777766555 688999999999996532 23569999998864
No 80
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.28 E-value=0.011 Score=53.73 Aligned_cols=52 Identities=21% Similarity=0.493 Sum_probs=39.4
Q ss_pred CCCCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCC--CCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLK--RNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~--~~CPlCr~~~~~ 83 (246)
+-+..|-.|-+.+--+ +.-..++|.|.||..|+.+.+.++ .+||.|++...+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs 417 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSS 417 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhh
Confidence 3478899999876543 224567999999999999977553 579999965553
No 81
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.06 E-value=0.026 Score=52.12 Aligned_cols=36 Identities=22% Similarity=0.582 Sum_probs=31.8
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL 70 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~ 70 (246)
+++++|+||...+.+ |++++|+|..|..|....+..
T Consensus 2 eeelkc~vc~~f~~e---piil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE---PIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccC---ceEeecccHHHHHHHHhhccc
Confidence 478999999999999 899999999999999875543
No 82
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.02 E-value=0.021 Score=42.50 Aligned_cols=33 Identities=27% Similarity=0.594 Sum_probs=27.5
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHH
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIE 65 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~ 65 (246)
+++..|++|-..+.++ +-+..||||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~-~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS-VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCc-eEEEeCCCeEEeccccc
Confidence 4678899999999874 45667999999999974
No 83
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.029 Score=51.42 Aligned_cols=47 Identities=19% Similarity=0.567 Sum_probs=35.4
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC--------CCCCCCCCc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL--------KRNCPLCNA 79 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--------~~~CPlCr~ 79 (246)
..+.|.||.+......--+.++|+|.||..|+..++.. .-+||-++-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 46789999998765333567899999999999997652 235877654
No 84
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.88 E-value=0.074 Score=42.82 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=36.7
Q ss_pred CCCCCccccccccccCCCceEEccCCCc-----CCHHHHHHHhcCC--CCCCCCCcccccC
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHA-----YCLECIEKWSNLK--RNCPLCNAPFRSW 84 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~-----Fc~~Ci~~w~~~~--~~CPlCr~~~~~~ 84 (246)
+..+..|-||.+.-.+ ...+|... -|.+|+.+|...+ ..|++|++.|.-.
T Consensus 5 s~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 5 SLMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 3467889999988533 23566542 4999999998764 5699999998643
No 85
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.82 E-value=0.024 Score=55.92 Aligned_cols=46 Identities=33% Similarity=0.828 Sum_probs=37.6
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcC--CCCCCCCCcccccC
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL--KRNCPLCNAPFRSW 84 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--~~~CPlCr~~~~~~ 84 (246)
..|.||++ ... ++...|+|.||..|+...... ...||+|+..+...
T Consensus 455 ~~c~ic~~-~~~---~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDS---FFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-ccc---ceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 88999999 554 899999999999999995543 34699999877653
No 86
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.048 Score=48.33 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=39.5
Q ss_pred CCccccccccccCC---CceEEccCCCcCCHHHHHHHhcCC-CCCCCCCccc
Q 046606 34 GQKCPICLDNLTDR---RTAVLKVCTHAYCLECIEKWSNLK-RNCPLCNAPF 81 (246)
Q Consensus 34 ~~~C~ICl~~~~~~---~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CPlCr~~~ 81 (246)
-..|-||-+.+... ..|..+.|||.+|..|+....... ..||.|+...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 35699999998764 468888999999999999876654 5699999985
No 87
>PHA02862 5L protein; Provisional
Probab=93.72 E-value=0.046 Score=43.27 Aligned_cols=46 Identities=24% Similarity=0.681 Sum_probs=34.8
Q ss_pred CCccccccccccCCCceEEccCCC-----cCCHHHHHHHhcCC--CCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTH-----AYCLECIEKWSNLK--RNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H-----~Fc~~Ci~~w~~~~--~~CPlCr~~~~~ 83 (246)
++.|=||.+.-.+ . ..+|.. .-|..|+.+|++.+ ..|++|+..|.-
T Consensus 2 ~diCWIC~~~~~e---~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDE---R-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCC---C-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4679999998644 2 367654 36999999998764 469999999863
No 88
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.47 E-value=0.062 Score=41.93 Aligned_cols=54 Identities=28% Similarity=0.659 Sum_probs=40.5
Q ss_pred CCCCCCCccccccccccCCCceEEc---cCCCcCCHHHHHH-Hhc--CCCCCCCCCcccccC
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLK---VCTHAYCLECIEK-WSN--LKRNCPLCNAPFRSW 84 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~---~C~H~Fc~~Ci~~-w~~--~~~~CPlCr~~~~~~ 84 (246)
..+..-..|-||.+...+. ..+- -||-..|..|-.. |-. ..+.||.|++.|.+.
T Consensus 75 F~d~~lYeCnIC~etS~ee--~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 75 FLDPKLYECNICKETSAEE--RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred ecCCCceeccCcccccchh--hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3334678899999987774 3333 4899999999999 532 357899999999763
No 89
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.35 E-value=0.027 Score=48.18 Aligned_cols=53 Identities=23% Similarity=0.637 Sum_probs=38.1
Q ss_pred CCCcccccccc-ccCCCceEEc--cCCCcCCHHHHHHHhc-CCCCCC--CCCcccccCc
Q 046606 33 RGQKCPICLDN-LTDRRTAVLK--VCTHAYCLECIEKWSN-LKRNCP--LCNAPFRSWF 85 (246)
Q Consensus 33 ~~~~C~ICl~~-~~~~~~~~~~--~C~H~Fc~~Ci~~w~~-~~~~CP--lCr~~~~~~~ 85 (246)
.+..||||... +-+|++.++. .|-|.+|..|+.+.+. ....|| -|.+.+....
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 46689999975 3444433332 4999999999999554 556799 8988776543
No 90
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.11 Score=47.61 Aligned_cols=48 Identities=19% Similarity=0.513 Sum_probs=38.6
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC---CCCCCCCcc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK---RNCPLCNAP 80 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~---~~CPlCr~~ 80 (246)
.-+.|||=.+.-.+...|+.+.|||..+.+-+...+++. .+||.|-..
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 356799988776655559999999999999999988764 589999543
No 91
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.36 E-value=0.06 Score=42.18 Aligned_cols=36 Identities=22% Similarity=0.720 Sum_probs=28.4
Q ss_pred CCccccccccccC--CCceEEccCC------CcCCHHHHHHHhcCC
Q 046606 34 GQKCPICLDNLTD--RRTAVLKVCT------HAYCLECIEKWSNLK 71 (246)
Q Consensus 34 ~~~C~ICl~~~~~--~~~~~~~~C~------H~Fc~~Ci~~w~~~~ 71 (246)
...|.||++.+.+ + .+..+|+ |.||.+|+..|....
T Consensus 26 ~~EC~IC~~~I~~~~G--vV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDG--VVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCC--EEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 6779999999987 4 5556675 679999999995443
No 92
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.33 E-value=0.11 Score=33.79 Aligned_cols=44 Identities=27% Similarity=0.699 Sum_probs=21.7
Q ss_pred CccccccccccCCCceEEccCCCcCCHH--HHHHHhcC--CCCCCCCCcc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLE--CIEKWSNL--KRNCPLCNAP 80 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~--Ci~~w~~~--~~~CPlCr~~ 80 (246)
+.|||....+..+ +....|.|.-|++ -+...... .-.||+|+++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 5799999999885 6677899985554 33333222 3469999863
No 93
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=0.066 Score=47.49 Aligned_cols=44 Identities=27% Similarity=0.714 Sum_probs=30.1
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
..|.-|--.+.. .-.+++|.|.||++|... ...+.||.|--.+.
T Consensus 91 HfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAI--YGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCccee--eecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 346666555443 245779999999999753 33577999976554
No 94
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.12 E-value=0.031 Score=57.79 Aligned_cols=50 Identities=30% Similarity=0.662 Sum_probs=43.0
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.+...|+||++.+.+- .....|||.+|..|...|...+..||.|+...++
T Consensus 1151 ~~~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred hcccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhhhhhh
Confidence 4566899999999863 5677899999999999999999999999976654
No 95
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=91.71 E-value=0.058 Score=34.45 Aligned_cols=44 Identities=27% Similarity=0.715 Sum_probs=25.2
Q ss_pred ccccccccccCCCceEEccCC-CcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 36 KCPICLDNLTDRRTAVLKVCT-HAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~-H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
.|--|.-...+ +..|. |..|..|+..++..+..||+|+.++..+
T Consensus 4 nCKsCWf~~k~-----Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANKG-----LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--SS-----EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCCC-----eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 45555443332 45675 6689999999999999999999987653
No 96
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.51 E-value=0.053 Score=53.01 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=39.1
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhc---CCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN---LKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~---~~~~CPlCr~~~~~ 83 (246)
....|+||...+.. ++++.|.|.||..|+..-+. ....||+|+.....
T Consensus 20 k~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 46789999999998 68999999999999987332 24579999976654
No 97
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=91.40 E-value=0.12 Score=33.05 Aligned_cols=40 Identities=28% Similarity=0.848 Sum_probs=25.5
Q ss_pred cccccccccCCCceEEccCCC-----cCCHHHHHHHhcC--CCCCCCC
Q 046606 37 CPICLDNLTDRRTAVLKVCTH-----AYCLECIEKWSNL--KRNCPLC 77 (246)
Q Consensus 37 C~ICl~~~~~~~~~~~~~C~H-----~Fc~~Ci~~w~~~--~~~CPlC 77 (246)
|-||++.-.+.. +...+|.- ..|..|+..|+.. ..+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678998766532 56777754 3599999999874 4669887
No 98
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.27 E-value=0.095 Score=32.92 Aligned_cols=41 Identities=22% Similarity=0.615 Sum_probs=21.8
Q ss_pred cccccccccCCCceEEccCCCcCCHHHHHHHhcCCC--CCCCC
Q 046606 37 CPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKR--NCPLC 77 (246)
Q Consensus 37 C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~--~CPlC 77 (246)
|.+|.+.+..+..-....|+-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877641111125888999999999876654 69987
No 99
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=0.1 Score=50.56 Aligned_cols=47 Identities=26% Similarity=0.489 Sum_probs=35.0
Q ss_pred CCCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 33 RGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
+-..|+||+..|.+. ..++.+.|||+.|..|+....+ .+|| |+..-.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp-~~~De~ 57 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP-TKRDED 57 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC-CCcccc
Confidence 456799998877654 3578889999999999987543 5687 655433
No 100
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=0.2 Score=41.05 Aligned_cols=52 Identities=23% Similarity=0.505 Sum_probs=34.7
Q ss_pred CCCCccccccccccCC----CceEEccCCCcCCHHHHHHHhcCC-----------CCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDR----RTAVLKVCTHAYCLECIEKWSNLK-----------RNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~----~~~~~~~C~H~Fc~~Ci~~w~~~~-----------~~CPlCr~~~~~ 83 (246)
++--.|-||..+--++ .+.-...||..||.-|+..|+..- ..||.|..++..
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3444566666543332 223345899999999999998641 369999887754
No 101
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.57 E-value=0.42 Score=43.74 Aligned_cols=52 Identities=31% Similarity=0.685 Sum_probs=35.1
Q ss_pred CCCCCCccccccccccCCCceEEc-----------------cC-----CCcCCHHHHHHHhcC-------------CCCC
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLK-----------------VC-----THAYCLECIEKWSNL-------------KRNC 74 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~-----------------~C-----~H~Fc~~Ci~~w~~~-------------~~~C 74 (246)
..++.+.|--|+..-.+ ..+. +| ....|.+|+.+|+.. +..|
T Consensus 267 ~~~e~e~CigC~~~~~~---vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~C 343 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPN---VKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPC 343 (358)
T ss_pred CccccCCccccccCCCC---cEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCC
Confidence 34678889999986655 2211 22 234699999998753 2469
Q ss_pred CCCCcccccC
Q 046606 75 PLCNAPFRSW 84 (246)
Q Consensus 75 PlCr~~~~~~ 84 (246)
|.||+.|.-.
T Consensus 344 PtCRa~FCil 353 (358)
T PF10272_consen 344 PTCRAKFCIL 353 (358)
T ss_pred CCCcccceee
Confidence 9999998643
No 102
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.41 E-value=0.22 Score=43.72 Aligned_cols=36 Identities=22% Similarity=0.648 Sum_probs=28.9
Q ss_pred CCCccccccccccCCCceEEccC----CCcCCHHHHHHHhcCC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVC----THAYCLECIEKWSNLK 71 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C----~H~Fc~~Ci~~w~~~~ 71 (246)
..+.|.+|.+.|+| .-...| .|.||+.|-.+..+.+
T Consensus 267 apLcCTLC~ERLED---THFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLED---THFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred Cceeehhhhhhhcc---CceeecCCCcccceecccCHHHHHhh
Confidence 45889999999999 444566 6899999998877643
No 103
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=88.32 E-value=0.26 Score=49.13 Aligned_cols=50 Identities=32% Similarity=0.804 Sum_probs=36.9
Q ss_pred CCCCccccccccccCCCceEE--ccCCCcCCHHHHHHHhcCC-------CCCCCCCcccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVL--KVCTHAYCLECIEKWSNLK-------RNCPLCNAPFR 82 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~--~~C~H~Fc~~Ci~~w~~~~-------~~CPlCr~~~~ 82 (246)
.....|.||.+.+... .++. ..|.|.||+.||..|.... -.||.|.....
T Consensus 189 ~~~yeCmIC~e~I~~t-~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRT-APVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeecccc-CCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 3567899999998753 1232 2589999999999997642 25999985544
No 104
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.00 E-value=0.23 Score=42.03 Aligned_cols=40 Identities=35% Similarity=0.760 Sum_probs=31.3
Q ss_pred cccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCccccc
Q 046606 37 CPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 37 C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
|-+|-..-.. +.++||.|. +|..|-.. -..||+|+.....
T Consensus 161 Cr~C~~~~~~---VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREAT---VLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCce---EEeecccceEeccccccc----CccCCCCcChhhc
Confidence 8999887665 788999996 99999533 4569999876543
No 105
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=87.96 E-value=0.36 Score=43.17 Aligned_cols=46 Identities=26% Similarity=0.782 Sum_probs=36.3
Q ss_pred CCCCCccccccccccCCCceEEccC--CCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVC--THAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C--~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..+-+.||||.+.+..+ ...| ||.-|..|-. +....||.|+..++.
T Consensus 45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 34567899999999873 3456 7999999964 456789999999984
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=0.24 Score=45.85 Aligned_cols=38 Identities=18% Similarity=0.603 Sum_probs=27.4
Q ss_pred CCCccccccccccCC-CceEEccCCCcCCHHHHHHHhcC
Q 046606 33 RGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNL 70 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~ 70 (246)
....|.||....... .......|+|.||.+|+.+....
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 467899999443332 22236789999999999987653
No 107
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=0.44 Score=47.83 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=28.6
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHH
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKW 67 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w 67 (246)
+.++.|.+|...+... .-++.+|||.||..|+.+-
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHH
Confidence 4688999999987654 2567799999999999873
No 108
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.74 E-value=0.53 Score=46.76 Aligned_cols=56 Identities=13% Similarity=0.389 Sum_probs=40.5
Q ss_pred CCCCCCccccccccccCC----CceEEccCCCcCCHHHHHHHhcC------CCCCCCCCcccccCc
Q 046606 30 PAIRGQKCPICLDNLTDR----RTAVLKVCTHAYCLECIEKWSNL------KRNCPLCNAPFRSWF 85 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~----~~~~~~~C~H~Fc~~Ci~~w~~~------~~~CPlCr~~~~~~~ 85 (246)
+..+...|.+|.-.+.++ ....+..|+|.||..||..|... ...|+.|+.-|..+.
T Consensus 92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 334567788888777762 12334469999999999999764 245899998888764
No 109
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.10 E-value=1 Score=38.86 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHh
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWS 68 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~ 68 (246)
+-+.|.+||+.+.+ |+..+=||.||.+||.+++
T Consensus 42 ~FdcCsLtLqPc~d---Pvit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRD---PVITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccC---CccCCCCeeeeHHHHHHHH
Confidence 45678999999999 8999999999999999964
No 110
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.88 E-value=1.4 Score=39.40 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=36.2
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC---CCCCCCCc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK---RNCPLCNA 79 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~---~~CPlCr~ 79 (246)
.-+.||+=.+.-.+...|+.+.|||..-.+-+...+++. .+||.|-.
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 346798876665544459999999999999999887764 67999954
No 111
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.36 E-value=1.6 Score=43.67 Aligned_cols=52 Identities=17% Similarity=0.547 Sum_probs=38.2
Q ss_pred CCCCccccccccccCCCceEEccCCCc-----CCHHHHHHHhcCC--CCCCCCCcccccC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHA-----YCLECIEKWSNLK--RNCPLCNAPFRSW 84 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~-----Fc~~Ci~~w~~~~--~~CPlCr~~~~~~ 84 (246)
+++..|-||...-... .+.-.||... .|.+|+.+|+..+ .+|-+|+.++.-+
T Consensus 10 ~d~~~CRICr~e~~~d-~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRD-DPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCC-CcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 4678999999763321 2566677653 6999999999764 5699999888754
No 112
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=77.67 E-value=0.28 Score=34.71 Aligned_cols=29 Identities=28% Similarity=0.667 Sum_probs=21.3
Q ss_pred hhhhhhhhhhhhhhcCCCCc--EEEEeccee
Q 046606 201 QRIDPWIRRELQALLGGPRS--IHYCSCGLY 229 (246)
Q Consensus 201 ~Rl~~Wl~REL~v~~~~~~~--~~~~~~~~~ 229 (246)
.+|.|||.+.|+-++|..|. |.|+...|.
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~ 32 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLK 32 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 57899999999999997666 666655543
No 113
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.42 E-value=1 Score=39.04 Aligned_cols=55 Identities=24% Similarity=0.552 Sum_probs=39.1
Q ss_pred CCCCCccccccccccCC-CceEEccCC-----CcCCHHHHHHHhcCCC--------CCCCCCcccccCc
Q 046606 31 AIRGQKCPICLDNLTDR-RTAVLKVCT-----HAYCLECIEKWSNLKR--------NCPLCNAPFRSWF 85 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~-~~~~~~~C~-----H~Fc~~Ci~~w~~~~~--------~CPlCr~~~~~~~ 85 (246)
.+.+-.|-||...-++. ...-+-||. |-.|..|+..|...+. .||.|++.|--..
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 35677899999987664 223455774 4479999999986532 4999999886543
No 114
>PLN02189 cellulose synthase
Probab=76.37 E-value=2.7 Score=43.41 Aligned_cols=51 Identities=27% Similarity=0.624 Sum_probs=37.0
Q ss_pred CCCccccccccccCC---C-ceEEccCCCcCCHHHHHH-HhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDR---R-TAVLKVCTHAYCLECIEK-WSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~---~-~~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~~~~~ 83 (246)
....|.||-|.+... + .+....|+--.|..|.+- ....+..||.||+.|..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 456899999987532 2 233346888899999954 44556789999999973
No 115
>PLN02436 cellulose synthase A
Probab=73.55 E-value=3.8 Score=42.47 Aligned_cols=51 Identities=25% Similarity=0.633 Sum_probs=36.8
Q ss_pred CCCccccccccccC---CC-ceEEccCCCcCCHHHHHH-HhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTD---RR-TAVLKVCTHAYCLECIEK-WSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~---~~-~~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~~~~~ 83 (246)
....|.||-|.+.. ++ .+....|+--.|..|.+- ....+..||.||+.|..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 45589999998643 22 233346888899999954 34456789999999973
No 116
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=73.50 E-value=3.2 Score=29.44 Aligned_cols=51 Identities=25% Similarity=0.611 Sum_probs=20.9
Q ss_pred CCCccccccccccCC---C-ceEEccCCCcCCHHHHHH-HhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDR---R-TAVLKVCTHAYCLECIEK-WSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~---~-~~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~~~~~ 83 (246)
....|.||-+.+--. + ++....|+--.|..|..- .......||.|++.|..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 466799999876432 2 122346888889999976 44556789999988864
No 117
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.21 E-value=3.4 Score=35.88 Aligned_cols=51 Identities=16% Similarity=0.399 Sum_probs=39.3
Q ss_pred CCCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 33 RGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
..+.|||---.+... .+..+..|||.|-..-+.+.- ...|++|.+.|....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccC
Confidence 357799887777654 456778999999998887643 467999999998653
No 118
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.18 E-value=1.7 Score=38.45 Aligned_cols=30 Identities=23% Similarity=0.628 Sum_probs=22.7
Q ss_pred CCCcCCHHHHHHHhc-------------CCCCCCCCCcccccC
Q 046606 55 CTHAYCLECIEKWSN-------------LKRNCPLCNAPFRSW 84 (246)
Q Consensus 55 C~H~Fc~~Ci~~w~~-------------~~~~CPlCr~~~~~~ 84 (246)
|....|.+|+.+|+. ++.+||.|++.|.-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 455678999988864 245799999998754
No 119
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=73.14 E-value=2.1 Score=42.63 Aligned_cols=42 Identities=21% Similarity=0.526 Sum_probs=31.3
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCC
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPL 76 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPl 76 (246)
-+.|.||.-.+... .-+...|+|..|..|..+|+...-.||.
T Consensus 1028 ~~~C~~C~l~V~gs-s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGS-SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeeEeeEeecc-chhhccccccccHHHHHHHHhcCCcCCC
Confidence 44577776655432 1345689999999999999998888875
No 120
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.45 E-value=1.2 Score=36.03 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=17.4
Q ss_pred CCCccccccccccCCCceEEccCCCcCC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYC 60 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc 60 (246)
+.-.|.|||+.+...+....++|...||
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEee
Confidence 4455777777776654455566766555
No 121
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=71.71 E-value=3.9 Score=39.38 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=37.3
Q ss_pred CCCchhhHH---HHHHHHHHHHhcCCEEEeCCCCC-cccccCCCCCCCCchhhhhhhhhhhhhh--hhhcCCCCc-EEEE
Q 046606 152 SVLDEVVSE---RKLRWRASVYNAGFQAVPLSPRR-CLGQNASGNNFVKGRLVQRIDPWIRREL--QALLGGPRS-IHYC 224 (246)
Q Consensus 152 ~lp~~~~~~---~~l~~Rr~vY~~~L~~~~~~s~~-~~~~~i~~~~~~~p~~~~Rl~~Wl~REL--~v~~~~~~~-~~~~ 224 (246)
.+|++..-+ ....|...+|.++++..-..+.. .+.+.+.+....+.-..+...+|.++|| +...+..+. ++.+
T Consensus 191 ~V~~~~ll~t~~sdeef~~~~~i~Q~r~vgt~s~~~~~s~~~~a~v~~~~~~sp~~~~~s~~~~deq~~~~~~~~~~~~~ 270 (553)
T KOG4430|consen 191 HVPSDSLLQTGESDEEFTISIEIKQIRNVGTKSSRNNLSSIVQATVVKKAPVSPVKKPHSKRELDEQENKNACGLCLSEA 270 (553)
T ss_pred eecchhhhcccccchhhcchhhhhhhhhccchhHHhhhhhhhccccccccccCccCcccchhhhhhhhcccchhhchhhH
Confidence 455554433 34666666666666543322221 1222222222212115677789999999 555555555 4444
Q ss_pred e
Q 046606 225 S 225 (246)
Q Consensus 225 ~ 225 (246)
.
T Consensus 271 ~ 271 (553)
T KOG4430|consen 271 D 271 (553)
T ss_pred h
Confidence 3
No 122
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.36 E-value=4.8 Score=26.54 Aligned_cols=34 Identities=35% Similarity=0.747 Sum_probs=26.7
Q ss_pred CCCccccccccccCC-CceEEccCCCcCCHHHHHH
Q 046606 33 RGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEK 66 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~ 66 (246)
....|++|-+.|.+. +.++-..|+-.+|..|+..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 467799999999643 4566668999999999654
No 123
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=69.77 E-value=3.7 Score=36.99 Aligned_cols=49 Identities=29% Similarity=0.677 Sum_probs=37.6
Q ss_pred CCccccccccccCCC-ceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 34 GQKCPICLDNLTDRR-TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~-~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
...|+||-+...... ..+-.+|++..|+.|+..-......||.|++++.
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 367999999774321 2334479999999999998888999999996554
No 124
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.90 E-value=2.6 Score=39.01 Aligned_cols=46 Identities=22% Similarity=0.546 Sum_probs=32.2
Q ss_pred CCccccccccccC--CCceEEccCCCcCCHHHHHHHhcCCCCCCCCCc
Q 046606 34 GQKCPICLDNLTD--RRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79 (246)
Q Consensus 34 ~~~C~ICl~~~~~--~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~ 79 (246)
--.||.|.-.+.- +...++=.|||.||+.|...|......|..|-.
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~r 353 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECCR 353 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCccc
Confidence 3458888876543 233444459999999999999887776655533
No 125
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=66.92 E-value=4.7 Score=36.30 Aligned_cols=56 Identities=23% Similarity=0.455 Sum_probs=33.9
Q ss_pred hhhcccCCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCC
Q 046606 23 FVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCN 78 (246)
Q Consensus 23 ~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr 78 (246)
|.+.+......+..|-.|.+.+.......--.|.+.||.+|=.-....-..||-|.
T Consensus 319 F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 319 FVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred hhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 33433333334555888877665543344557888898888544444445688885
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=65.55 E-value=4.2 Score=34.39 Aligned_cols=49 Identities=18% Similarity=0.476 Sum_probs=38.2
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.-..|.+|...+... ...-.|+-.++..|+.++++....||.|.--+..
T Consensus 180 nlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~h 228 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWTH 228 (235)
T ss_pred HHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchhcccCc
Confidence 345699999987653 4445677789999999999998899999765543
No 127
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.70 E-value=5.9 Score=30.20 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=32.0
Q ss_pred CCccccccccccCCC-----------ceEEccCCCcCCHHHHHHHhcCCCCCCCCC
Q 046606 34 GQKCPICLDNLTDRR-----------TAVLKVCTHAYCLECIEKWSNLKRNCPLCN 78 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~-----------~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr 78 (246)
...|--|+..|.++. ...-..|++.||.+|=.-+.+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 456999999886520 012347899999999766666667799885
No 128
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.37 E-value=3.7 Score=38.73 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=37.9
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC--------CCC--CCCCcccccC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK--------RNC--PLCNAPFRSW 84 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~--------~~C--PlCr~~~~~~ 84 (246)
..+..|-||.+.+.. ......|+|.||..|+..++..+ .+| +-|.+.+...
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 456889999999875 26777999999999999987642 134 4566666653
No 129
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=63.25 E-value=6 Score=41.14 Aligned_cols=51 Identities=29% Similarity=0.709 Sum_probs=37.2
Q ss_pred CCCccccccccccCC---C-ceEEccCCCcCCHHHHHH-HhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDR---R-TAVLKVCTHAYCLECIEK-WSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~---~-~~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~~~~~ 83 (246)
....|.||-|.+.-. + .+....|+--.|..|.+- ....+..||.||+.|..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 355899999986432 2 233457888899999954 45567789999999973
No 130
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=62.02 E-value=7.2 Score=34.98 Aligned_cols=44 Identities=7% Similarity=-0.104 Sum_probs=34.7
Q ss_pred CCCccccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPF 81 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~ 81 (246)
...+|-.|-..+.. .++.+|+|. ||.+|.. +.....||.|....
T Consensus 342 s~~~~~~~~~~~~s---t~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLS---TIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceee---eEeecCCcccChhhhhh--cccCCccccccccc
Confidence 35668888887766 788899997 9999987 55568899997654
No 131
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=61.42 E-value=6.7 Score=25.54 Aligned_cols=42 Identities=24% Similarity=0.585 Sum_probs=20.6
Q ss_pred cccccccccCC-------CceEEccCCCcCCHHHHHHHhcCCCCCCCCC
Q 046606 37 CPICLDNLTDR-------RTAVLKVCTHAYCLECIEKWSNLKRNCPLCN 78 (246)
Q Consensus 37 C~ICl~~~~~~-------~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr 78 (246)
|--|+..|... ....-..|++.||.+|=.=.-..-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 55566666653 0122347999999999543334446798874
No 132
>PLN02400 cellulose synthase
Probab=60.45 E-value=8.7 Score=40.03 Aligned_cols=51 Identities=27% Similarity=0.634 Sum_probs=36.7
Q ss_pred CCCccccccccccCC---C-ceEEccCCCcCCHHHHHH-HhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDR---R-TAVLKVCTHAYCLECIEK-WSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~---~-~~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~~~~~ 83 (246)
....|.||-|.+.-. + .+....|+--.|..|.+- ....+..||.||+.|..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 455899999986432 2 233457888899999843 34456789999999973
No 133
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=58.77 E-value=9.9 Score=39.47 Aligned_cols=51 Identities=25% Similarity=0.648 Sum_probs=37.2
Q ss_pred CCCccccccccccCC---C-ceEEccCCCcCCHHHHHH-HhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDR---R-TAVLKVCTHAYCLECIEK-WSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~---~-~~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~~~~~ 83 (246)
....|.||-|.+... + .+....|+--.|..|.+- ....+..||.|++.|..
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 567799999986432 2 233447888899999954 34456789999999973
No 134
>PLN02195 cellulose synthase A
Probab=56.45 E-value=12 Score=38.62 Aligned_cols=50 Identities=18% Similarity=0.523 Sum_probs=36.1
Q ss_pred CCCccccccccccCC---C-ceEEccCCCcCCHHHHHH-HhcCCCCCCCCCcccc
Q 046606 33 RGQKCPICLDNLTDR---R-TAVLKVCTHAYCLECIEK-WSNLKRNCPLCNAPFR 82 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~---~-~~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~~~~ 82 (246)
....|.||-|.+... + .+....|+--.|..|.+- -...+..||.||+.|.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 355799999976432 2 233457998899999943 2344677999999998
No 135
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=54.09 E-value=17 Score=24.14 Aligned_cols=47 Identities=21% Similarity=0.644 Sum_probs=32.0
Q ss_pred CCccccccccccCCCceEEccCCC--cCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTH--AYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H--~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...|-.|-..+... ..-..-|.+ +||..|....+ ...||-|.-.+..
T Consensus 5 rpnCE~C~~dLp~~-s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 5 RPNCECCDKDLPPD-SPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCCccccCCCCCCC-CCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 34577777777543 123344665 69999998876 4679999877654
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.85 E-value=13 Score=37.23 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=35.7
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCC--CCcccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPL--CNAPFR 82 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPl--Cr~~~~ 82 (246)
...|.+|-..+..- ...--.|+|.-|..|+..|+.....||. |...-.
T Consensus 779 ~~~CtVC~~vi~G~-~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGV-DVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCH 828 (839)
T ss_pred hcCceeecceeeee-EeecccccccccHHHHHHHHhcCCCCccccCCcccc
Confidence 44688888877651 1223369999999999999998888887 765443
No 137
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=52.65 E-value=8.9 Score=37.97 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=31.6
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcC--C--CCCCCCCcccccCcc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL--K--RNCPLCNAPFRSWFY 86 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--~--~~CPlCr~~~~~~~~ 86 (246)
-+.|+|+.-.+.-+ +....|+|.-|++-..-...+ . -.||+|.+.......
T Consensus 306 SL~CPl~~~Rm~~P--~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLP--ARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred EecCCcccceeecC--CcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 45688887776665 555678887666544321111 2 249999988765433
No 138
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=51.43 E-value=3.6 Score=22.87 Aligned_cols=10 Identities=40% Similarity=1.092 Sum_probs=4.7
Q ss_pred CCCCCCCccc
Q 046606 72 RNCPLCNAPF 81 (246)
Q Consensus 72 ~~CPlCr~~~ 81 (246)
..||.|...|
T Consensus 15 ~~Cp~CG~~F 24 (26)
T PF10571_consen 15 KFCPHCGYDF 24 (26)
T ss_pred CcCCCCCCCC
Confidence 4455554443
No 139
>PLN02248 cellulose synthase-like protein
Probab=50.02 E-value=16 Score=38.35 Aligned_cols=32 Identities=22% Similarity=0.527 Sum_probs=27.2
Q ss_pred cCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 54 VCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 54 ~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
.|++..|.+|...-.+....||-||.++....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCcccccccc
Confidence 57778899999998888889999999996543
No 140
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.42 E-value=4.8 Score=35.87 Aligned_cols=52 Identities=23% Similarity=0.551 Sum_probs=41.5
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
.++..|-||...+.-+ ...--|+|.||..|...|......||.|+.......
T Consensus 103 ~~~~~~~~~~g~l~vp--t~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~ 154 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVP--TRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVL 154 (324)
T ss_pred CCccceeeeeeeEEec--ccccCceeeeeecCCchhhhhhhccchhhcCcCcee
Confidence 3567899999988773 233359999999999999998889999988776543
No 141
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.34 E-value=1 Score=31.34 Aligned_cols=42 Identities=26% Similarity=0.623 Sum_probs=22.3
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
+..||.|...+.-. . +|.+|..|-.. +.....||-|.+++..
T Consensus 1 e~~CP~C~~~L~~~-----~--~~~~C~~C~~~-~~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ-----G--GHYHCEACQKD-YKKEAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEEE-----T--TEEEETTT--E-EEEEEE-TTT-SB-EE
T ss_pred CCcCCCCCCccEEe-----C--CEEECcccccc-ceecccCCCcccHHHH
Confidence 35799999987641 1 67778778654 2334569999888764
No 142
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.79 E-value=1.1 Score=41.13 Aligned_cols=50 Identities=26% Similarity=0.515 Sum_probs=39.6
Q ss_pred CCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...|+||...+... ...-.+.|||.++..||..|+....+||.|+..+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 45699998877642 113456799999999999999888899999887764
No 143
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=46.45 E-value=7.7 Score=25.18 Aligned_cols=12 Identities=42% Similarity=1.140 Sum_probs=6.4
Q ss_pred CCCCCCCccccc
Q 046606 72 RNCPLCNAPFRS 83 (246)
Q Consensus 72 ~~CPlCr~~~~~ 83 (246)
..||+|..+|..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 379999999875
No 144
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=45.79 E-value=17 Score=30.54 Aligned_cols=42 Identities=26% Similarity=0.674 Sum_probs=28.1
Q ss_pred CCCcccccccc-ccCC----CceEEccCCCcCCHHHHHHHhcCCCCCCCCCc
Q 046606 33 RGQKCPICLDN-LTDR----RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79 (246)
Q Consensus 33 ~~~~C~ICl~~-~~~~----~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~ 79 (246)
..+.|-+|.+. +.-| .+..-..|+-.||..|.. +..||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 46788899853 2111 233445799999999965 266999954
No 145
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=45.37 E-value=9.5 Score=24.72 Aligned_cols=38 Identities=18% Similarity=0.599 Sum_probs=21.2
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhc--CCCCCCCCCcc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN--LKRNCPLCNAP 80 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~--~~~~CPlCr~~ 80 (246)
+.+.||.|-..+... . +...|...-.. ....||+|...
T Consensus 1 ~~f~CP~C~~~~~~~---~-------L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES---S-------LVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH---H-------HHHHHHhHCcCCCCCccCCCchhh
Confidence 357899999965541 1 22333333221 23469999763
No 146
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=44.98 E-value=5.3 Score=35.87 Aligned_cols=45 Identities=18% Similarity=0.553 Sum_probs=32.3
Q ss_pred CCCccccccccccCCCceEEc----cCC--CcCCHHHHHHHhcCCCCCCCCCcc
Q 046606 33 RGQKCPICLDNLTDRRTAVLK----VCT--HAYCLECIEKWSNLKRNCPLCNAP 80 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~----~C~--H~Fc~~Ci~~w~~~~~~CPlCr~~ 80 (246)
..-.||||-..-.- .++. .=| +.+|..|-.+|.-...+||.|...
T Consensus 183 ~~~~CPvCGs~P~~---s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVA---SMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhh---hhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 34589999987543 2221 233 347899999999989999999864
No 147
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=44.10 E-value=12 Score=32.93 Aligned_cols=51 Identities=24% Similarity=0.592 Sum_probs=36.1
Q ss_pred CCccccccccccCCC-ceEEccCCC-----cCCHHHHHHHhc--CCCCCCCCCcccccC
Q 046606 34 GQKCPICLDNLTDRR-TAVLKVCTH-----AYCLECIEKWSN--LKRNCPLCNAPFRSW 84 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~-~~~~~~C~H-----~Fc~~Ci~~w~~--~~~~CPlCr~~~~~~ 84 (246)
+..|-||........ .....+|.- ..|..|+..|.. ....|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 478999999765421 034566643 358999999987 456799999877643
No 148
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=43.54 E-value=3.9 Score=36.19 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=23.0
Q ss_pred CCCccccccccccCCCceEEccC-----CCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVC-----THAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C-----~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
..-.||||-..-.- .++..= .|.+|..|-.+|.-....||.|...-.
T Consensus 171 ~~g~CPvCGs~P~~---s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 171 QRGYCPVCGSPPVL---SVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDH 222 (290)
T ss_dssp T-SS-TTT---EEE---EEEE------EEEEEETTT--EEE--TTS-TTT---SS
T ss_pred cCCcCCCCCCcCce---EEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCC
Confidence 45789999987544 233322 345899999999888889999976543
No 149
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.47 E-value=16 Score=36.48 Aligned_cols=53 Identities=19% Similarity=0.453 Sum_probs=37.6
Q ss_pred CCCCccccccccccCCC-------ceEEccCCCcC--------------------CHHHHHHHhcC--------CCCCCC
Q 046606 32 IRGQKCPICLDNLTDRR-------TAVLKVCTHAY--------------------CLECIEKWSNL--------KRNCPL 76 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~-------~~~~~~C~H~F--------------------c~~Ci~~w~~~--------~~~CPl 76 (246)
.+-..|.-|+..+.++. ....+.||..| |..|..++-.. ...||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 35678999999988861 23345788777 99999987543 235999
Q ss_pred CCcccccC
Q 046606 77 CNAPFRSW 84 (246)
Q Consensus 77 Cr~~~~~~ 84 (246)
|.-.+.-+
T Consensus 179 CGP~~~l~ 186 (750)
T COG0068 179 CGPHLFLV 186 (750)
T ss_pred cCCCeEEE
Confidence 98765543
No 150
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=42.34 E-value=13 Score=32.41 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=35.7
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcC--CCCCCCCCcc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL--KRNCPLCNAP 80 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--~~~CPlCr~~ 80 (246)
+..|||=...+.+| .+...|+|.|-.+-|...+.. ...||+=...
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 56799988888885 566689999999999998876 3458876555
No 151
>smart00311 PWI PWI, domain in splicing factors.
Probab=41.19 E-value=3.7 Score=28.66 Aligned_cols=29 Identities=21% Similarity=0.599 Sum_probs=23.2
Q ss_pred hhhhhhhhhhhhhhhcCCCCc--EEEEecce
Q 046606 200 VQRIDPWIRRELQALLGGPRS--IHYCSCGL 228 (246)
Q Consensus 200 ~~Rl~~Wl~REL~v~~~~~~~--~~~~~~~~ 228 (246)
...+.|||...+.-++|..|. |.|+...|
T Consensus 6 ~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l 36 (74)
T smart00311 6 LDEIKPWITKKVIEFLGFEEDTLVEFILSQI 36 (74)
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 467889999999999998887 66665444
No 152
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=40.39 E-value=4.5 Score=26.66 Aligned_cols=16 Identities=25% Similarity=1.051 Sum_probs=13.5
Q ss_pred cCCCcCCHHHHHHHhc
Q 046606 54 VCTHAYCLECIEKWSN 69 (246)
Q Consensus 54 ~C~H~Fc~~Ci~~w~~ 69 (246)
.|++.||+.|..+|..
T Consensus 45 ~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 45 KCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCeECCCCCCcCCC
Confidence 6899999999888753
No 153
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=39.97 E-value=9.7 Score=34.25 Aligned_cols=45 Identities=22% Similarity=0.507 Sum_probs=32.5
Q ss_pred CCCccccccccccCCCceEEc--cCC--CcCCHHHHHHHhcCCCCCCCCCc
Q 046606 33 RGQKCPICLDNLTDRRTAVLK--VCT--HAYCLECIEKWSNLKRNCPLCNA 79 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~--~C~--H~Fc~~Ci~~w~~~~~~CPlCr~ 79 (246)
....||+|-..-.-. .+.. .=| +.+|..|-.+|.-....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 568899999875431 1111 223 34799999999998999999986
No 154
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=39.90 E-value=5.5 Score=21.38 Aligned_cols=6 Identities=50% Similarity=1.586 Sum_probs=2.6
Q ss_pred CCCCCc
Q 046606 74 CPLCNA 79 (246)
Q Consensus 74 CPlCr~ 79 (246)
||.|.+
T Consensus 16 C~~CG~ 21 (23)
T PF13240_consen 16 CPNCGT 21 (23)
T ss_pred hhhhCC
Confidence 444443
No 155
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.27 E-value=12 Score=29.41 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=15.6
Q ss_pred CCCCCCcccccccc-ccCCCceEEccCCCc
Q 046606 30 PAIRGQKCPICLDN-LTDRRTAVLKVCTHA 58 (246)
Q Consensus 30 ~~~~~~~C~ICl~~-~~~~~~~~~~~C~H~ 58 (246)
-..++..|-||+.. |.+ -|||.
T Consensus 61 Gv~ddatC~IC~KTKFAD-------G~GH~ 83 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFAD-------GCGHN 83 (169)
T ss_pred ccCcCcchhhhhhccccc-------ccCcc
Confidence 33578899999975 444 57774
No 156
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=38.77 E-value=11 Score=36.64 Aligned_cols=44 Identities=25% Similarity=0.695 Sum_probs=26.9
Q ss_pred CCCcccccccc-----ccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCc
Q 046606 33 RGQKCPICLDN-----LTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79 (246)
Q Consensus 33 ~~~~C~ICl~~-----~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~ 79 (246)
..+.|.+|... |....+..-..|++.||..|+.. .+..||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 46778888431 11111233457999999999654 3344999944
No 157
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.60 E-value=17 Score=24.90 Aligned_cols=12 Identities=33% Similarity=1.279 Sum_probs=8.7
Q ss_pred cCCHHHHHHHhc
Q 046606 58 AYCLECIEKWSN 69 (246)
Q Consensus 58 ~Fc~~Ci~~w~~ 69 (246)
.||..|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999976
No 158
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.43 E-value=11 Score=37.81 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=26.8
Q ss_pred CCCccccccccccCC----CceEEccCCCcCCHHHHHHHh
Q 046606 33 RGQKCPICLDNLTDR----RTAVLKVCTHAYCLECIEKWS 68 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~----~~~~~~~C~H~Fc~~Ci~~w~ 68 (246)
.+..|..|.+..... ...+...|+|.||..|+..-.
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~ 822 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMES 822 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHH
Confidence 345899999876522 236678999999999997743
No 159
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.52 E-value=25 Score=34.91 Aligned_cols=47 Identities=21% Similarity=0.503 Sum_probs=35.8
Q ss_pred ccccccccccCCCceEEccCCC-cCCHHHHHHHhc--C----CCCCCCCCcccccCc
Q 046606 36 KCPICLDNLTDRRTAVLKVCTH-AYCLECIEKWSN--L----KRNCPLCNAPFRSWF 85 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H-~Fc~~Ci~~w~~--~----~~~CPlCr~~~~~~~ 85 (246)
.|+||-....- ...-.|+| ..|..|..+... . ...||+|+..+....
T Consensus 2 ~c~ic~~s~~~---~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s 55 (669)
T KOG2231|consen 2 SCAICAFSPDF---VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKS 55 (669)
T ss_pred CcceeecCccc---cccccccccccchhhhhhhhhhcccccccccCcccccceeeec
Confidence 59999887765 67789999 699999988532 2 345899998776543
No 160
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.69 E-value=26 Score=30.10 Aligned_cols=26 Identities=35% Similarity=0.662 Sum_probs=22.0
Q ss_pred CCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 59 YCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 59 Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
-|..|-..-..+-+.||+||+.-.+.
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSR 221 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccC
Confidence 58899888888889999999887665
No 161
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=36.68 E-value=9.1 Score=34.54 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=22.3
Q ss_pred eEEccCCCcCCHHHHHHHh-cCCCCCCCCCccccc
Q 046606 50 AVLKVCTHAYCLECIEKWS-NLKRNCPLCNAPFRS 83 (246)
Q Consensus 50 ~~~~~C~H~Fc~~Ci~~w~-~~~~~CPlCr~~~~~ 83 (246)
+....=+-.||+.|-.+.. .....|+.|+..|..
T Consensus 323 p~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCl 357 (378)
T KOG2807|consen 323 PETEYNGSRFCFACQGELLSSGRYRCESCKNVFCL 357 (378)
T ss_pred cccccCCCcceeeeccccCCCCcEEchhccceeec
Confidence 4444456678999944432 234679999998874
No 162
>PF14353 CpXC: CpXC protein
Probab=36.32 E-value=35 Score=26.12 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=24.8
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcC---CCCCCCCCccccc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL---KRNCPLCNAPFRS 83 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~---~~~CPlCr~~~~~ 83 (246)
..||-|...+.. .+...-.-..-.+=....+.. ..+||.|+..+..
T Consensus 2 itCP~C~~~~~~---~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEF---EVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEE---EEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 468888887765 222222222333333333333 2469999887753
No 163
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=32.60 E-value=30 Score=29.74 Aligned_cols=26 Identities=38% Similarity=0.744 Sum_probs=21.1
Q ss_pred CCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 59 YCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 59 Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
.|..|-.....+-+.||+|+..-.+.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSr 276 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSR 276 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccC
Confidence 47888888778889999999876654
No 165
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=30.45 E-value=57 Score=18.48 Aligned_cols=37 Identities=27% Similarity=0.635 Sum_probs=20.6
Q ss_pred ccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccc
Q 046606 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~ 81 (246)
.|..|.+.+.+.. ..+..=+..||..| ..|..|+..+
T Consensus 1 ~C~~C~~~i~~~~-~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGE-LVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCc-EEEEeCCccccccC--------CCCcccCCcC
Confidence 3777888776531 12222344566655 4577776655
No 167
>PRK11595 DNA utilization protein GntX; Provisional
Probab=30.28 E-value=44 Score=28.36 Aligned_cols=39 Identities=28% Similarity=0.566 Sum_probs=25.0
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPF 81 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~ 81 (246)
..|.+|-..+... ....|..|...+......||.|..+.
T Consensus 6 ~~C~~C~~~~~~~--------~~~lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 6 GLCWLCRMPLALS--------HWGICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred CcCccCCCccCCC--------CCcccHHHHhhCCcccCcCccCCCcC
Confidence 3588898766431 12368888877543345688887654
No 168
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.72 E-value=8.8 Score=33.86 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=35.4
Q ss_pred CCccccccccccCC---CceEEcc--------CCCcCCHHHHHHHhcC-CCCCCCCCcc
Q 046606 34 GQKCPICLDNLTDR---RTAVLKV--------CTHAYCLECIEKWSNL-KRNCPLCNAP 80 (246)
Q Consensus 34 ~~~C~ICl~~~~~~---~~~~~~~--------C~H~Fc~~Ci~~w~~~-~~~CPlCr~~ 80 (246)
+..|.||...+... .++.+.. |+|..|..|+..-+.. ...||-|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46699999888721 3455556 9999999999996443 4689999764
No 169
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=29.15 E-value=18 Score=22.68 Aligned_cols=31 Identities=26% Similarity=0.583 Sum_probs=21.1
Q ss_pred ccccccccccCCCceEEccCCCcCCHHHHHH
Q 046606 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEK 66 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~ 66 (246)
.|.||...-.+.....-..|+..||..|+..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGP 31 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTS
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCC
Confidence 3888988544433344457888899999754
No 170
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=28.40 E-value=45 Score=21.35 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=21.5
Q ss_pred CccccccccccCC-CceEEccCCCcCCHHHHHHH
Q 046606 35 QKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKW 67 (246)
Q Consensus 35 ~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w 67 (246)
..|.+|...|.-- ....-..||+.||..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 4688888766531 11233479999999987543
No 171
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=28.19 E-value=16 Score=24.65 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=16.1
Q ss_pred CCCCccccccccccCC-CceEEccCCCcCCHHHHHH
Q 046606 32 IRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEK 66 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~ 66 (246)
.+...|.+|...|.-- ....-..||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 4567899999998531 1122347888888877543
No 172
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=27.44 E-value=67 Score=24.02 Aligned_cols=49 Identities=20% Similarity=0.586 Sum_probs=29.1
Q ss_pred CCCccccccccccCCCceE------EccC---CCcCCHHHHHHHhcC---------CCCCCCCCcccc
Q 046606 33 RGQKCPICLDNLTDRRTAV------LKVC---THAYCLECIEKWSNL---------KRNCPLCNAPFR 82 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~------~~~C---~H~Fc~~Ci~~w~~~---------~~~CPlCr~~~~ 82 (246)
....|-.|...-.+.. .. ...| .-.||..||...... .-.||.|+..-.
T Consensus 6 ~g~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred CCCCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 3455666666443310 11 1355 557999999886543 235999987543
No 173
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.63 E-value=54 Score=22.98 Aligned_cols=46 Identities=22% Similarity=0.662 Sum_probs=27.9
Q ss_pred ccccccccccCCCceEEccC--CCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 36 KCPICLDNLTDRRTAVLKVC--THAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C--~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
.|--|-..+... ..-..-| -|+||.+|...-+ ...||-|.-.+...
T Consensus 7 nCECCDrDLpp~-s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~R 54 (84)
T COG3813 7 NCECCDRDLPPD-STDARICTFECTFCADCAENRL--HGLCPNCGGELVAR 54 (84)
T ss_pred CCcccCCCCCCC-CCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcC
Confidence 455565555422 1122234 4679999987644 46799998877653
No 174
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=26.15 E-value=35 Score=27.08 Aligned_cols=14 Identities=43% Similarity=1.039 Sum_probs=9.5
Q ss_pred CCCCCCCCcccccC
Q 046606 71 KRNCPLCNAPFRSW 84 (246)
Q Consensus 71 ~~~CPlCr~~~~~~ 84 (246)
+.+||.|..+|.+.
T Consensus 17 KYKCpkC~vPYCSl 30 (157)
T KOG2857|consen 17 KYKCPKCSVPYCSL 30 (157)
T ss_pred hccCCCCCCccccc
Confidence 45677777777653
No 175
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=25.90 E-value=38 Score=29.79 Aligned_cols=46 Identities=17% Similarity=0.476 Sum_probs=31.2
Q ss_pred CccccccccccCCCceEEc-----cCCCcCCHHHHHHH-hcC--------CCCCCCCCccc
Q 046606 35 QKCPICLDNLTDRRTAVLK-----VCTHAYCLECIEKW-SNL--------KRNCPLCNAPF 81 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~-----~C~H~Fc~~Ci~~w-~~~--------~~~CPlCr~~~ 81 (246)
..|-+|.+.+.+.+ ...+ .|.-.+|+.|+... +.. ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~-~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETD-WSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhcccc-ceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 58999999884321 2222 47777899999883 332 25699999854
No 176
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=25.86 E-value=40 Score=33.92 Aligned_cols=51 Identities=20% Similarity=0.584 Sum_probs=35.8
Q ss_pred CCCccccccccccCC-----C--ceEEccCCCcC--------------------CHHHHHHHhcCC--------CCCCCC
Q 046606 33 RGQKCPICLDNLTDR-----R--TAVLKVCTHAY--------------------CLECIEKWSNLK--------RNCPLC 77 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~-----~--~~~~~~C~H~F--------------------c~~Ci~~w~~~~--------~~CPlC 77 (246)
+-..|.-|+.++.++ . ..-.+.||..| |..|..++.... ..||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 567799999999876 1 12234677655 999999985431 369999
Q ss_pred Cccccc
Q 046606 78 NAPFRS 83 (246)
Q Consensus 78 r~~~~~ 83 (246)
.-.+.-
T Consensus 147 gp~l~l 152 (711)
T TIGR00143 147 GPQLNF 152 (711)
T ss_pred CcEEEE
Confidence 876643
No 177
>PRK04023 DNA polymerase II large subunit; Validated
Probab=25.57 E-value=53 Score=34.26 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=87.5
Q ss_pred CCCCccccccccccCCCceEEccCCC-----cCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchhhhhhhhcCCCCC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTH-----AYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQQQLQPLIKD 106 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H-----~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~~~~~~lp~~~~~ 106 (246)
.....|+-|-..... .....||. .||..|- +......||.|........... .....+....+..+...
T Consensus 624 Vg~RfCpsCG~~t~~---frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~~~s~~~-i~l~~~~~~A~~~lg~~ 697 (1121)
T PRK04023 624 IGRRKCPSCGKETFY---RRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPTPYSKRK-IDLKELYDRALENLGER 697 (1121)
T ss_pred ccCccCCCCCCcCCc---ccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCCccceEE-ecHHHHHHHHHHHhCCc
Confidence 457789999887544 45556884 4999993 3334467999998887543221 13444444444443332
Q ss_pred Cc-ccccCCCCCCCCceeeecccccccCCCCCCCCCCC------------------ccccCC----CCCCCchhhHHHHH
Q 046606 107 KT-FISQSHSSPRTPHRIIRRSRDEISSDRGRSRPLPW------------------RRSFGR----PGSVLDEVVSERKL 163 (246)
Q Consensus 107 ~~-~~~~~~~~~~~~~~~~~~~r~~~~~~q~~~~p~p~------------------~r~~~~----~~~lp~~~~~~~~l 163 (246)
.. -.+-| . -++++ +..-|.|- -||-.+ +.+-|+. .|-.+-
T Consensus 698 ~~~~~~KG--V------------kgl~S--~~k~~EPlEKGiLRAk~~v~vFKDGTiR~D~tD~PlTHfrp~E-igvsve 760 (1121)
T PRK04023 698 KNFDEVKG--V------------KGLTS--KDKIPEPLEKGILRAKHDVYVFKDGTVRYDMTDLPLTHFRPRE-IGVSVE 760 (1121)
T ss_pred CCcccccc--c------------eeccc--CCCCCcchHhhhhhhhcCeeEecCcceeccCcCCCcccccHHH-cCCCHH
Confidence 22 11111 0 00000 00001110 011111 1233332 344456
Q ss_pred HHHHHHHhcCCEEEeCCCCCc-----ccccCCCCCCCCchhhhhhhhhhhhhhhhhcCCC
Q 046606 164 RWRASVYNAGFQAVPLSPRRC-----LGQNASGNNFVKGRLVQRIDPWIRRELQALLGGP 218 (246)
Q Consensus 164 ~~Rr~vY~~~L~~~~~~s~~~-----~~~~i~~~~~~~p~~~~Rl~~Wl~REL~v~~~~~ 218 (246)
++|-.=|.+.++-.++.+... -.|.|-+... ++-+-|...||.-.|.-+||-+
T Consensus 761 klreLGY~~Di~G~pL~~~dQivELk~QDiil~~~a--a~yll~va~fiDdLL~k~Ygl~ 818 (1121)
T PRK04023 761 KLRELGYTHDIYGNPLESEDQIVELKVQDVIISRDA--AEYLLRVAKFIDDLLEKYYGLE 818 (1121)
T ss_pred HHHHcCCccccCCCCCCCccceEEeecccEEcchHH--HHHHHHHHHHHHHHHHHhcCCC
Confidence 677778888888888777643 2333333221 5677899999999999999874
No 178
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=25.57 E-value=54 Score=23.97 Aligned_cols=37 Identities=27% Similarity=0.670 Sum_probs=28.4
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
...|-||...+.. =+|.||..|. -....|.+|...+.
T Consensus 44 ~~~C~~CK~~v~q--------~g~~YCq~CA----YkkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQ--------PGAKYCQTCA----YKKGICAMCGKKIL 80 (90)
T ss_pred Ccccccccccccc--------CCCccChhhh----cccCcccccCCeec
Confidence 5689999988765 2678999994 33567999988774
No 179
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.22 E-value=47 Score=32.18 Aligned_cols=45 Identities=27% Similarity=0.781 Sum_probs=35.7
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.....|.||.+.. . ....+|. +..|+..|...+..||+|...+..
T Consensus 477 ~~~~~~~~~~~~~-~---~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-S---ARITPCS---HALCLRKWLYVQEVCPLCHTYMKE 521 (543)
T ss_pred cccCcchHHHHHH-H---hcccccc---chhHHHhhhhhccccCCCchhhhc
Confidence 3577899999988 3 5666787 678888899999999999876654
No 180
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=24.69 E-value=43 Score=22.49 Aligned_cols=13 Identities=46% Similarity=1.127 Sum_probs=10.0
Q ss_pred CCCCCCCCccccc
Q 046606 71 KRNCPLCNAPFRS 83 (246)
Q Consensus 71 ~~~CPlCr~~~~~ 83 (246)
.+.||+|+.....
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 4679999987654
No 181
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.49 E-value=39 Score=19.52 Aligned_cols=10 Identities=50% Similarity=1.278 Sum_probs=7.2
Q ss_pred CCCCCCCCcc
Q 046606 71 KRNCPLCNAP 80 (246)
Q Consensus 71 ~~~CPlCr~~ 80 (246)
...||+|+..
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4579999764
No 182
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=23.25 E-value=27 Score=32.39 Aligned_cols=48 Identities=27% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCccccccccccCC-----------CceEEccCCCcCCHHHHHHHhc------CCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDR-----------RTAVLKVCTHAYCLECIEKWSN------LKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~-----------~~~~~~~C~H~Fc~~Ci~~w~~------~~~~CPlCr~~~~~ 83 (246)
....||+=+..|.-+ +.-+-+.|||.+-+. .|.. ....||+|++.-..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp --------------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 355688876655432 223556899986653 3532 24679999986544
No 183
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=22.47 E-value=42 Score=31.18 Aligned_cols=50 Identities=22% Similarity=0.681 Sum_probs=34.0
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCC------------------------CCCCCCCcccccCc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK------------------------RNCPLCNAPFRSWF 85 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~------------------------~~CPlCr~~~~~~~ 85 (246)
..||||+-+.-.. .-.+..|.-..|.+|+.++-... ..||-|........
T Consensus 75 ~ecpicflyyps~-~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~ve 148 (482)
T KOG2789|consen 75 TECPICFLYYPSA-KNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVE 148 (482)
T ss_pred ccCceeeeecccc-cchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCccccee
Confidence 4799999876541 12344688899999998753210 25999998765443
No 184
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.98 E-value=47 Score=33.00 Aligned_cols=42 Identities=17% Similarity=0.555 Sum_probs=28.7
Q ss_pred Ccccccccccc-CCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCc
Q 046606 35 QKCPICLDNLT-DRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79 (246)
Q Consensus 35 ~~C~ICl~~~~-~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~ 79 (246)
..|.+|...=. +..++.++.|+-.||..|...+ ...||+|.-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~---~~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDY---ASISEVCGP 697 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhhhhh---hccCcccCc
Confidence 45888876533 2245667789999999995544 456888853
No 185
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=21.35 E-value=47 Score=18.21 Aligned_cols=10 Identities=30% Similarity=0.936 Sum_probs=7.8
Q ss_pred CCCCCCcccc
Q 046606 73 NCPLCNAPFR 82 (246)
Q Consensus 73 ~CPlCr~~~~ 82 (246)
.||+|.+.+.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 5999988763
No 186
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.32 E-value=91 Score=28.25 Aligned_cols=51 Identities=24% Similarity=0.631 Sum_probs=31.9
Q ss_pred CCCccccccccccC-----C-----------CceEEccCCCcCCHHHHHHHhcC---------CCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTD-----R-----------RTAVLKVCTHAYCLECIEKWSNL---------KRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~-----~-----------~~~~~~~C~H~Fc~~Ci~~w~~~---------~~~CPlCr~~~~~ 83 (246)
.+-.||+|+..-.- + ......+|||.--..-..-|.+. ...||-|-+.+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 46789999864211 0 01123489997666666668764 2469999877653
No 187
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.07 E-value=50 Score=29.28 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=32.7
Q ss_pred CCCCccccccccccCCCceEEc---cCCCc--CCHHHHHHHhcCCCCCCCCCccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLK---VCTHA--YCLECIEKWSNLKRNCPLCNAPF 81 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~---~C~H~--Fc~~Ci~~w~~~~~~CPlCr~~~ 81 (246)
+.-..||+|-...... .+.. .=|-. -|.-|..+|.....+|--|.+.-
T Consensus 183 e~~~~CPvCGS~PvaS--mV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t~ 235 (308)
T COG3058 183 ESRQYCPVCGSMPVAS--MVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQSK 235 (308)
T ss_pred cccccCCCcCCCCcce--eeeecCccccchhhhhhhHHHHHHHHHHHhccccccC
Confidence 3455899999876653 2221 12222 48999999999888898887643
No 188
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=20.76 E-value=9.3 Score=25.02 Aligned_cols=35 Identities=23% Similarity=0.629 Sum_probs=18.1
Q ss_pred CCcccc--ccccccCC--C-c--eEEccCCCcCCHHHHHHHh
Q 046606 34 GQKCPI--CLDNLTDR--R-T--AVLKVCTHAYCLECIEKWS 68 (246)
Q Consensus 34 ~~~C~I--Cl~~~~~~--~-~--~~~~~C~H~Fc~~Ci~~w~ 68 (246)
-..||- |...+... . . ..-..|++.||+.|-..|.
T Consensus 18 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 18 IRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPWH 59 (64)
T ss_dssp CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSESC
T ss_pred ccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcccC
Confidence 347877 88776543 1 1 1222499999999977763
No 189
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.67 E-value=81 Score=23.29 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=26.4
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN 69 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~ 69 (246)
....|.||-..+..++.-..++ .-..|++|+.+-..
T Consensus 5 kewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 5 KEWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred ceeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 3678999999998875433344 66789999987543
No 190
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.40 E-value=59 Score=25.46 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=14.7
Q ss_pred ccccccccCCCceEEccCCCcCCH
Q 046606 38 PICLDNLTDRRTAVLKVCTHAYCL 61 (246)
Q Consensus 38 ~ICl~~~~~~~~~~~~~C~H~Fc~ 61 (246)
-||.+.-.. ++.-.|||.||-
T Consensus 61 fi~qs~~~r---v~rcecghsf~d 81 (165)
T COG4647 61 FICQSAQKR---VIRCECGHSFGD 81 (165)
T ss_pred EEEeccccc---EEEEeccccccC
Confidence 467665444 556689999986
No 191
>PF08945 Bclx_interact: Bcl-x interacting, BH3 domain; InterPro: IPR015040 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Members of this entry induce apoptosis. The isoform BimL is more potent than the isoform BimEL. They form heterodimers with a number of antiapoptotic Bcl-2 proteins including Mcl-1, Bcl-2, Bcl-X(L), BFL-1, and BHRF1, but do not heterodimerise with proapoptotic proteins such as BAD, BOK, BAX or BAK. They are peripheral membrane proteins, associated with intracytoplasmic membranes. The BH3 motif is required for Bcl-2 binding and cytotoxicity. After antigen-driven expansion, the majority of T cells involved in an immune response die rapidly by apoptosis dependent on the Bcl-2 related proteins; Bim and Bax or Bak []. Bcl-xL regulates Bax and Bim is an important regulator of bcl-x deficiency induced cell death during hematopoiesis and testicular development in mice []. Bim(L) displaces Bcl-x(L) in the mitochondria and promotes Bax translocation during TNFalpha-induced apoptosis []. A potent inhibitor of antiapoptotic Bcl-2 family members, including Bcl-X(L), is AT-101 []. The immunophilin protein FKBP8 and its splice variant are Bcl-XL-interacting proteins and regulate the apoptotic signalling pathways in the RPE []. This protein is a long alpha helix, required for interaction with Bcl-x. It is found in BAM, Bim and Bcl2-like protein 11 []. ; PDB: 2NL9_B 2V6Q_B 3KJ0_B 3KJ1_B 3FDL_B 3D7V_B 3IO8_D 2K7W_B 2VM6_B 3IO9_B ....
Probab=20.03 E-value=58 Score=19.79 Aligned_cols=13 Identities=38% Similarity=0.836 Sum_probs=10.3
Q ss_pred hhhhhhhhhhhhh
Q 046606 202 RIDPWIRRELQAL 214 (246)
Q Consensus 202 Rl~~Wl~REL~v~ 214 (246)
|-..||.+||+-+
T Consensus 15 ~PE~wiAqELRRI 27 (40)
T PF08945_consen 15 RPEIWIAQELRRI 27 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4457999999865
Done!