Query 046606
Match_columns 246
No_of_seqs 300 out of 1814
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 03:50:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pg6_A E3 ubiquitin-protein li 99.7 3.9E-19 1.3E-23 139.2 -0.9 105 72-193 13-124 (159)
2 1t1h_A Gspef-atpub14, armadill 99.4 1.3E-13 4.4E-18 97.3 5.7 67 31-100 5-72 (78)
3 3fl2_A E3 ubiquitin-protein li 99.4 1E-13 3.4E-18 106.7 3.8 71 32-105 50-122 (124)
4 2djb_A Polycomb group ring fin 99.4 3.8E-13 1.3E-17 93.6 5.1 54 29-85 10-64 (72)
5 2egp_A Tripartite motif-contai 99.4 1.4E-13 4.7E-18 97.3 2.8 61 29-92 7-74 (79)
6 2ecw_A Tripartite motif-contai 99.4 4.2E-13 1.4E-17 95.7 5.0 61 29-92 14-80 (85)
7 2ect_A Ring finger protein 126 99.4 5.6E-13 1.9E-17 94.0 4.7 56 31-86 12-67 (78)
8 1v87_A Deltex protein 2; ring- 99.3 1.3E-12 4.4E-17 98.8 6.7 52 33-84 24-95 (114)
9 2ep4_A Ring finger protein 24; 99.3 7.3E-13 2.5E-17 92.5 4.8 55 30-84 11-65 (74)
10 1iym_A EL5; ring-H2 finger, ub 99.3 7.2E-13 2.5E-17 87.1 4.3 51 32-82 3-54 (55)
11 2d8t_A Dactylidin, ring finger 99.3 5.8E-13 2E-17 92.4 3.8 50 31-83 12-61 (71)
12 3lrq_A E3 ubiquitin-protein li 99.3 4.8E-13 1.7E-17 99.2 3.3 62 32-96 20-83 (100)
13 2ecy_A TNF receptor-associated 99.3 1E-12 3.6E-17 89.8 4.7 53 29-84 10-63 (66)
14 2ysl_A Tripartite motif-contai 99.3 1.5E-12 5E-17 90.6 5.5 53 29-84 15-70 (73)
15 2ecv_A Tripartite motif-contai 99.3 6.3E-13 2.2E-17 94.8 3.7 60 29-91 14-79 (85)
16 2ckl_A Polycomb group ring fin 99.3 6.7E-13 2.3E-17 99.6 3.9 67 32-101 13-84 (108)
17 3ng2_A RNF4, snurf, ring finge 99.3 4.6E-13 1.6E-17 92.6 2.8 55 31-85 7-65 (71)
18 3ztg_A E3 ubiquitin-protein li 99.3 8.2E-13 2.8E-17 96.1 4.2 67 30-99 9-79 (92)
19 1chc_A Equine herpes virus-1 r 99.3 4.5E-13 1.6E-17 91.9 2.7 51 32-84 3-53 (68)
20 2csy_A Zinc finger protein 183 99.3 1.6E-12 5.5E-17 92.4 5.5 49 31-82 12-60 (81)
21 2kiz_A E3 ubiquitin-protein li 99.3 1.3E-12 4.3E-17 90.0 4.7 55 30-84 10-64 (69)
22 2ea6_A Ring finger protein 4; 99.3 5.5E-13 1.9E-17 91.5 2.7 53 31-83 12-68 (69)
23 1z6u_A NP95-like ring finger p 99.3 7.6E-13 2.6E-17 105.3 3.8 69 33-104 77-147 (150)
24 1x4j_A Ring finger protein 38; 99.3 6E-13 2E-17 93.3 2.4 53 31-83 20-72 (75)
25 2y43_A E3 ubiquitin-protein li 99.3 1.6E-12 5.6E-17 95.9 4.6 62 33-97 21-83 (99)
26 2kr4_A Ubiquitin conjugation f 99.3 1.2E-12 4.2E-17 94.2 3.8 67 30-99 10-76 (85)
27 2yur_A Retinoblastoma-binding 99.3 1.4E-12 4.7E-17 91.3 3.9 52 29-83 10-64 (74)
28 2l0b_A E3 ubiquitin-protein li 99.3 4E-12 1.4E-16 92.5 6.3 53 31-83 37-89 (91)
29 4ayc_A E3 ubiquitin-protein li 99.3 1E-12 3.5E-17 102.9 3.2 49 33-84 52-100 (138)
30 2ysj_A Tripartite motif-contai 99.3 3.7E-12 1.3E-16 86.1 4.8 46 29-77 15-63 (63)
31 2kre_A Ubiquitin conjugation f 99.3 3E-12 1E-16 95.0 4.7 69 30-101 25-93 (100)
32 2ecm_A Ring finger and CHY zin 99.3 2.2E-12 7.6E-17 84.7 3.6 51 32-82 3-54 (55)
33 1wgm_A Ubiquitin conjugation f 99.3 3.5E-12 1.2E-16 94.3 4.7 68 30-100 18-86 (98)
34 2xeu_A Ring finger protein 4; 99.3 1.3E-12 4.5E-17 88.3 2.0 53 33-85 2-58 (64)
35 3dpl_R Ring-box protein 1; ubi 99.2 2.1E-12 7E-17 96.9 2.6 52 31-82 34-100 (106)
36 2ecl_A Ring-box protein 2; RNF 99.2 6.6E-12 2.3E-16 89.5 4.5 52 32-83 13-76 (81)
37 1jm7_A BRCA1, breast cancer ty 99.2 5.1E-12 1.7E-16 95.0 3.9 65 33-100 20-87 (112)
38 2ecj_A Tripartite motif-contai 99.2 8.9E-12 3E-16 82.6 4.4 45 30-77 11-58 (58)
39 3l11_A E3 ubiquitin-protein li 99.2 1.2E-12 4E-17 99.3 -0.0 50 31-83 12-62 (115)
40 1g25_A CDK-activating kinase a 99.2 8.6E-12 2.9E-16 84.9 3.9 55 33-87 2-59 (65)
41 2ct2_A Tripartite motif protei 99.2 1.5E-11 5.1E-16 88.4 4.9 54 30-83 11-68 (88)
42 2ecn_A Ring finger protein 141 99.2 6.6E-12 2.3E-16 86.6 2.5 51 30-84 11-61 (70)
43 3hct_A TNF receptor-associated 99.2 7.7E-12 2.6E-16 95.3 2.5 57 27-86 11-68 (118)
44 2ckl_B Ubiquitin ligase protei 99.2 6.7E-12 2.3E-16 101.1 2.0 67 33-102 53-122 (165)
45 3knv_A TNF receptor-associated 99.2 4.3E-12 1.5E-16 99.9 0.8 51 29-82 26-77 (141)
46 1jm7_B BARD1, BRCA1-associated 99.1 8.5E-12 2.9E-16 94.9 1.8 60 33-97 21-81 (117)
47 4ap4_A E3 ubiquitin ligase RNF 99.1 2.2E-11 7.7E-16 93.7 3.2 54 32-85 5-62 (133)
48 2yu4_A E3 SUMO-protein ligase 99.1 3.4E-11 1.2E-15 88.2 3.9 68 31-101 4-81 (94)
49 1e4u_A Transcriptional repress 99.1 8.1E-11 2.8E-15 83.3 4.6 54 30-84 7-63 (78)
50 1rmd_A RAG1; V(D)J recombinati 99.1 5.3E-11 1.8E-15 90.2 2.8 51 32-85 21-72 (116)
51 2c2l_A CHIP, carboxy terminus 99.1 6.2E-11 2.1E-15 102.2 3.5 69 30-101 204-273 (281)
52 4a0k_B E3 ubiquitin-protein li 99.0 1.4E-11 4.8E-16 93.8 -0.7 55 29-83 43-112 (117)
53 2vje_A E3 ubiquitin-protein li 99.0 1.6E-10 5.4E-15 78.6 2.9 49 32-83 6-57 (64)
54 1bor_A Transcription factor PM 99.0 8.5E-11 2.9E-15 77.8 1.3 46 32-83 4-49 (56)
55 4ic3_A E3 ubiquitin-protein li 99.0 1.4E-10 4.9E-15 81.1 2.1 45 33-84 23-68 (74)
56 2f42_A STIP1 homology and U-bo 99.0 2.6E-10 8.8E-15 93.0 3.5 69 29-100 101-170 (179)
57 3hcs_A TNF receptor-associated 98.9 1.9E-10 6.6E-15 92.8 2.4 56 27-85 11-67 (170)
58 4ap4_A E3 ubiquitin ligase RNF 98.9 2.4E-10 8.4E-15 87.8 1.7 55 31-85 69-127 (133)
59 2vje_B MDM4 protein; proto-onc 98.9 4.7E-10 1.6E-14 76.0 2.6 49 32-83 5-56 (63)
60 2ecg_A Baculoviral IAP repeat- 98.9 5.4E-10 1.8E-14 78.2 2.7 45 33-84 24-69 (75)
61 2y1n_A E3 ubiquitin-protein li 98.9 1.3E-09 4.5E-14 98.5 4.9 49 33-84 331-380 (389)
62 2d8s_A Cellular modulator of i 98.9 9.5E-10 3.3E-14 78.1 2.9 52 31-83 12-70 (80)
63 3htk_C E3 SUMO-protein ligase 98.8 1.8E-09 6.1E-14 92.4 2.8 61 32-95 179-244 (267)
64 2ct0_A Non-SMC element 1 homol 98.8 9.6E-09 3.3E-13 71.7 5.2 50 32-83 13-64 (74)
65 2ea5_A Cell growth regulator w 98.7 6.5E-09 2.2E-13 71.4 3.9 48 30-84 11-59 (68)
66 2yho_A E3 ubiquitin-protein li 98.7 3.6E-09 1.2E-13 74.9 1.6 45 33-84 17-62 (79)
67 1wim_A KIAA0161 protein; ring 98.6 8.6E-09 2.9E-13 75.1 1.5 52 32-83 3-66 (94)
68 2bay_A PRE-mRNA splicing facto 98.6 1.9E-08 6.3E-13 67.7 2.4 52 34-88 3-55 (61)
69 3t6p_A Baculoviral IAP repeat- 98.5 2.4E-08 8.4E-13 89.3 1.5 45 33-84 294-339 (345)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.3 4.1E-07 1.4E-11 60.8 3.6 49 31-82 3-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.1 1.5E-06 5.3E-11 63.3 2.9 48 36-85 3-51 (101)
72 3k1l_B Fancl; UBC, ring, RWD, 98.0 8.8E-07 3E-11 78.4 1.1 53 32-84 306-374 (381)
73 3nw0_A Non-structural maintena 97.3 0.00031 1.1E-08 59.5 5.5 50 33-84 179-230 (238)
74 2ko5_A Ring finger protein Z; 95.6 0.0057 1.9E-07 43.8 2.4 49 32-85 26-75 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0055 1.9E-07 44.3 1.6 32 33-67 2-36 (101)
76 3m62_A Ubiquitin conjugation f 93.4 0.053 1.8E-06 54.1 4.0 70 28-100 885-955 (968)
77 2cs3_A Protein C14ORF4, MY039 92.6 0.094 3.2E-06 36.4 3.2 39 32-70 13-52 (93)
78 4fo9_A E3 SUMO-protein ligase 88.9 0.47 1.6E-05 42.2 5.0 72 34-111 215-290 (360)
79 1weo_A Cellulose synthase, cat 88.7 0.77 2.6E-05 32.4 5.0 51 33-83 15-70 (93)
80 2lri_C Autoimmune regulator; Z 88.1 0.51 1.7E-05 31.5 3.6 47 32-81 10-60 (66)
81 3i2d_A E3 SUMO-protein ligase 88.0 0.25 8.7E-06 44.0 2.7 54 34-89 249-306 (371)
82 2l5u_A Chromodomain-helicase-D 80.0 0.8 2.8E-05 29.8 1.8 46 31-79 8-57 (61)
83 1f62_A Transcription factor WS 78.0 1.5 5.1E-05 27.2 2.5 44 36-79 2-49 (51)
84 1mm2_A MI2-beta; PHD, zinc fin 76.5 0.64 2.2E-05 30.3 0.4 48 30-80 5-56 (61)
85 2k16_A Transcription initiatio 72.4 0.98 3.3E-05 30.5 0.6 51 32-82 16-70 (75)
86 3mjh_B Early endosome antigen 72.3 0.85 2.9E-05 26.3 0.2 14 33-46 4-17 (34)
87 1z60_A TFIIH basal transcripti 70.7 1.2 4.1E-05 29.0 0.7 43 35-77 16-58 (59)
88 3o36_A Transcription intermedi 70.0 1.2 4E-05 35.5 0.6 46 32-80 2-51 (184)
89 1fp0_A KAP-1 corepressor; PHD 69.6 2.6 8.9E-05 29.7 2.3 51 27-80 18-72 (88)
90 1wil_A KIAA1045 protein; ring 68.9 6.3 0.00022 27.5 4.1 35 32-67 13-47 (89)
91 3u5n_A E3 ubiquitin-protein li 67.0 1.2 4.1E-05 36.2 0.1 48 31-81 4-55 (207)
92 2ysm_A Myeloid/lymphoid or mix 65.4 2.4 8.2E-05 30.8 1.5 48 31-78 4-55 (111)
93 2e6r_A Jumonji/ARID domain-con 63.0 0.73 2.5E-05 32.7 -1.7 51 29-79 11-65 (92)
94 1xwh_A Autoimmune regulator; P 62.2 1.1 3.9E-05 29.5 -0.7 45 32-79 6-54 (66)
95 2yql_A PHD finger protein 21A; 61.9 0.67 2.3E-05 29.6 -1.9 45 31-78 6-54 (56)
96 2yw8_A RUN and FYVE domain-con 59.7 4.8 0.00016 27.6 2.1 38 28-65 13-51 (82)
97 2puy_A PHD finger protein 21A; 57.2 1.6 5.3E-05 28.2 -0.8 46 32-80 3-52 (60)
98 1joc_A EEA1, early endosomal a 52.8 8.7 0.0003 28.6 2.7 34 32-65 67-101 (125)
99 1z2q_A LM5-1; membrane protein 52.4 8.1 0.00028 26.5 2.3 37 29-65 16-53 (84)
100 1weu_A Inhibitor of growth fam 52.4 8.4 0.00029 27.1 2.4 50 30-81 32-86 (91)
101 1vfy_A Phosphatidylinositol-3- 51.9 9 0.00031 25.5 2.4 32 33-64 10-42 (73)
102 1wen_A Inhibitor of growth fam 51.5 10 0.00035 25.3 2.6 50 30-81 12-66 (71)
103 4g9i_A Hydrogenase maturation 50.9 9.6 0.00033 37.2 3.3 80 32-111 104-218 (772)
104 2jmo_A Parkin; IBR, E3 ligase, 50.4 1.3 4.3E-05 30.5 -2.2 41 33-75 24-74 (80)
105 3v43_A Histone acetyltransfera 50.4 25 0.00085 25.3 4.8 46 33-78 4-62 (112)
106 1x4q_A U4/U6 small nuclear rib 50.3 1.3 4.6E-05 31.4 -2.1 31 198-228 13-45 (92)
107 3zyq_A Hepatocyte growth facto 50.3 7.4 0.00025 32.0 2.1 37 29-65 159-196 (226)
108 2lbm_A Transcriptional regulat 49.7 17 0.00057 27.8 3.9 46 31-79 60-116 (142)
109 2lv9_A Histone-lysine N-methyl 49.4 4.6 0.00016 28.8 0.6 46 33-79 27-75 (98)
110 2vpb_A Hpygo1, pygopus homolog 48.1 9.6 0.00033 25.0 2.0 35 31-65 5-41 (65)
111 1wd2_A Ariadne-1 protein homol 48.0 1.7 5.6E-05 28.3 -1.8 37 34-70 6-47 (60)
112 2ro1_A Transcription intermedi 48.0 4.5 0.00015 32.4 0.4 44 34-80 2-49 (189)
113 1wep_A PHF8; structural genomi 47.5 15 0.00052 24.7 3.1 51 32-83 10-66 (79)
114 3v53_A RNA-binding protein 25; 46.9 8.7 0.0003 28.5 1.8 41 185-225 29-71 (119)
115 3lqh_A Histone-lysine N-methyl 45.9 4.6 0.00016 32.3 0.2 50 34-83 2-66 (183)
116 2dar_A PDZ and LIM domain prot 45.8 9.3 0.00032 26.2 1.8 42 32-84 23-64 (90)
117 3ql9_A Transcriptional regulat 45.5 19 0.00065 27.0 3.5 46 31-79 54-110 (129)
118 2d8v_A Zinc finger FYVE domain 45.1 12 0.00042 24.7 2.1 34 31-68 5-39 (67)
119 3t7l_A Zinc finger FYVE domain 44.1 11 0.00038 26.2 2.0 34 33-66 19-53 (90)
120 1dvp_A HRS, hepatocyte growth 44.0 10 0.00034 30.9 2.0 33 32-64 159-192 (220)
121 1x4u_A Zinc finger, FYVE domai 43.7 13 0.00043 25.5 2.2 35 30-64 10-45 (84)
122 2ct7_A Ring finger protein 31; 42.8 2.9 9.9E-05 29.0 -1.3 35 33-67 23-61 (86)
123 2yt5_A Metal-response element- 42.3 6.7 0.00023 25.4 0.5 49 31-79 3-60 (66)
124 2ku3_A Bromodomain-containing 42.2 18 0.00061 24.1 2.7 51 29-79 11-65 (71)
125 1m3v_A FLIN4, fusion of the LI 41.9 15 0.00052 26.7 2.5 51 33-83 31-81 (122)
126 2cor_A Pinch protein; LIM doma 41.1 18 0.00063 24.0 2.7 42 32-84 13-54 (79)
127 1x62_A C-terminal LIM domain p 39.8 16 0.00056 24.2 2.2 40 33-83 14-53 (79)
128 1x64_A Alpha-actinin-2 associa 38.7 24 0.00082 23.9 3.0 40 33-83 24-63 (89)
129 2l43_A N-teminal domain from h 38.4 18 0.00063 25.0 2.4 52 31-82 22-77 (88)
130 1y02_A CARP2, FYVE-ring finger 38.3 11 0.00038 27.9 1.3 50 30-79 15-65 (120)
131 1we9_A PHD finger family prote 37.9 10 0.00035 24.3 0.9 49 31-79 3-57 (64)
132 2e6s_A E3 ubiquitin-protein li 37.6 7.2 0.00025 26.5 0.1 45 35-79 27-76 (77)
133 3ttc_A HYPF, transcriptional r 37.3 14 0.00049 35.3 2.1 50 32-81 15-99 (657)
134 2d8x_A Protein pinch; LIM doma 36.4 18 0.00062 23.2 2.0 41 33-84 4-44 (70)
135 2xjy_A Rhombotin-2; oncoprotei 35.9 29 0.00098 25.2 3.3 52 32-83 27-78 (131)
136 2l4z_A DNA endonuclease RBBP8, 35.8 19 0.00065 26.4 2.2 40 33-82 60-99 (123)
137 1zbd_B Rabphilin-3A; G protein 35.3 12 0.00041 28.3 1.0 34 32-65 53-88 (134)
138 3vth_A Hydrogenase maturation 35.1 15 0.00053 35.7 2.0 51 32-82 109-194 (761)
139 3shb_A E3 ubiquitin-protein li 34.1 5.3 0.00018 27.2 -1.1 44 36-79 28-76 (77)
140 2fiy_A Protein FDHE homolog; F 34.0 5.3 0.00018 34.6 -1.3 46 32-80 180-231 (309)
141 3ask_A E3 ubiquitin-protein li 33.7 9.7 0.00033 31.5 0.3 45 35-79 175-224 (226)
142 2xqn_T Testin, TESS; metal-bin 33.4 30 0.001 25.0 3.0 47 33-83 29-75 (126)
143 3kj0_B BCL-2-like protein 11; 32.6 16 0.00054 19.3 0.9 12 203-214 6-17 (27)
144 2gmg_A Hypothetical protein PF 32.0 12 0.00039 27.2 0.4 28 50-82 68-95 (105)
145 1wig_A KIAA1808 protein; LIM d 32.0 24 0.00082 23.0 2.0 38 34-82 5-42 (73)
146 2ffw_A Midline-1; B-BOX, ring 32.0 34 0.0012 23.0 2.8 46 21-66 17-62 (78)
147 1mp1_A Ser/Arg-related nuclear 31.6 15 0.00053 26.8 1.1 30 200-229 22-53 (111)
148 2o35_A Hypothetical protein DU 31.4 18 0.00062 25.9 1.3 13 58-70 42-54 (105)
149 2wh6_B BCL-2-like protein 11; 31.3 18 0.00061 19.0 1.0 11 204-214 5-15 (26)
150 3fyb_A Protein of unknown func 31.2 18 0.00063 25.8 1.3 12 58-69 41-52 (104)
151 1wyh_A SLIM 2, skeletal muscle 30.9 36 0.0012 21.7 2.7 41 34-83 5-45 (72)
152 1rut_X Flinc4, fusion protein 30.3 20 0.00067 28.2 1.6 51 32-83 30-81 (188)
153 1wfk_A Zinc finger, FYVE domai 30.0 18 0.00062 25.1 1.2 34 32-65 7-41 (88)
154 1nyp_A Pinch protein; LIM doma 29.7 28 0.00097 21.9 2.0 39 34-83 5-43 (66)
155 3c6w_A P28ING5, inhibitor of g 29.2 7.6 0.00026 24.9 -0.9 48 30-79 5-57 (59)
156 2cup_A Skeletal muscle LIM-pro 29.2 33 0.0011 23.6 2.5 46 33-82 32-77 (101)
157 2dj7_A Actin-binding LIM prote 29.1 32 0.0011 22.9 2.3 42 32-83 13-54 (80)
158 2d8z_A Four and A half LIM dom 29.0 37 0.0013 21.5 2.6 39 34-83 5-43 (70)
159 3asl_A E3 ubiquitin-protein li 28.2 10 0.00035 25.1 -0.4 44 36-79 20-68 (70)
160 2pv0_B DNA (cytosine-5)-methyl 28.1 43 0.0015 29.8 3.5 45 33-80 92-148 (386)
161 2zet_C Melanophilin; complex, 27.5 23 0.0008 27.3 1.5 32 33-64 67-100 (153)
162 4gne_A Histone-lysine N-methyl 27.4 23 0.0008 25.6 1.4 46 31-81 12-63 (107)
163 1x6a_A LIMK-2, LIM domain kina 26.6 30 0.001 22.8 1.8 37 35-82 16-52 (81)
164 2cu8_A Cysteine-rich protein 2 26.6 26 0.00088 22.9 1.4 40 34-83 9-48 (76)
165 2co8_A NEDD9 interacting prote 26.2 42 0.0014 22.3 2.5 43 33-85 14-56 (82)
166 1wem_A Death associated transc 25.4 46 0.0016 22.0 2.5 48 33-81 15-71 (76)
167 3a1b_A DNA (cytosine-5)-methyl 25.3 39 0.0013 26.2 2.4 35 33-70 78-114 (159)
168 2vnf_A ING 4, P29ING4, inhibit 24.8 9.8 0.00034 24.4 -1.0 44 32-79 8-58 (60)
169 1g47_A Pinch protein; LIM doma 24.5 36 0.0012 22.0 1.9 43 32-83 9-51 (77)
170 2dlo_A Thyroid receptor-intera 24.1 29 0.00098 22.9 1.3 40 34-84 15-54 (81)
171 1x63_A Skeletal muscle LIM-pro 23.9 42 0.0014 22.0 2.2 42 34-84 15-56 (82)
172 1v6g_A Actin binding LIM prote 23.8 29 0.001 22.9 1.3 38 35-83 16-53 (81)
173 2cur_A Skeletal muscle LIM-pro 23.6 29 0.00099 22.1 1.2 39 34-83 5-43 (69)
174 2kwj_A Zinc finger protein DPF 22.9 3.8 0.00013 30.0 -3.7 47 35-81 59-109 (114)
175 2xb1_A Pygopus homolog 2, B-ce 22.9 27 0.00092 25.0 1.0 48 34-81 3-62 (105)
176 1wew_A DNA-binding family prot 22.9 53 0.0018 21.9 2.5 48 32-80 14-72 (78)
177 1x61_A Thyroid receptor intera 22.8 75 0.0026 20.1 3.2 41 34-83 5-45 (72)
178 2jvx_A NF-kappa-B essential mo 22.7 27 0.00091 19.0 0.7 10 73-82 5-14 (28)
179 2a20_A Regulating synaptic mem 22.5 49 0.0017 21.3 2.0 16 31-46 6-22 (62)
180 2k2d_A Ring finger and CHY zin 22.2 20 0.0007 24.4 0.2 35 74-108 1-35 (79)
181 3mpx_A FYVE, rhogef and PH dom 21.9 19 0.00065 31.9 0.0 36 32-67 373-409 (434)
182 2kgg_A Histone demethylase jar 21.6 57 0.002 19.8 2.3 43 36-78 4-52 (52)
183 2jrp_A Putative cytoplasmic pr 21.3 5.2 0.00018 27.7 -3.0 41 35-83 3-43 (81)
184 1x4k_A Skeletal muscle LIM-pro 21.2 39 0.0013 21.5 1.5 42 34-84 5-46 (72)
185 2jne_A Hypothetical protein YF 20.6 4.1 0.00014 29.2 -3.7 42 34-83 32-73 (101)
186 1x4l_A Skeletal muscle LIM-pro 20.4 74 0.0025 20.2 2.8 41 34-83 5-47 (72)
No 1
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=99.71 E-value=3.9e-19 Score=139.19 Aligned_cols=105 Identities=13% Similarity=0.057 Sum_probs=75.3
Q ss_pred CCCCCCCcccccCcccccCCc----hhhhhhhhcCCCCCCcccccCCCCCCCCceeeecccccccCCCCCCCCCCCcccc
Q 046606 72 RNCPLCNAPFRSWFYRINLSS----SDFLQQQLQPLIKDKTFISQSHSSPRTPHRIIRRSRDEISSDRGRSRPLPWRRSF 147 (246)
Q Consensus 72 ~~CPlCr~~~~~~~~~~~~~~----~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~q~~~~p~p~~r~~ 147 (246)
..-|+|+..++.+. .+++. .......||++++.++|.|.| ++ .+|+ |+++|||||++|.
T Consensus 13 ~~~~~C~~~yG~~~--GnQP~G~M~~~~~~~sLpGy~~~gtI~I~Y-~i-----------p~Gi---Qg~~HPnPGk~y~ 75 (159)
T 3pg6_A 13 GLVPRGSTSYGIQK--GNQPEGSMVFTVSRDSLPGYESFGTIVITY-SM-----------KAGI---QTEEHPNPGKRYP 75 (159)
T ss_dssp ------------CC--CCCCSEEEEEEEESSCCTTCTTSEEEEEEE-EE-----------CCEE---CCTTSSSTTCEEC
T ss_pred CcccccCccCcccc--cCCCCCeEEEEecCCCCCCCCCCCeEEEEE-Ec-----------CCcc---ccCcCCCCCCccC
Confidence 45799999998753 33222 233455678888777777777 44 4677 9999999999998
Q ss_pred CC--CCCCCchhhHHHHHHHHHHHHhcCCEEEeCCCCCc-ccccCCCCC
Q 046606 148 GR--PGSVLDEVVSERKLRWRASVYNAGFQAVPLSPRRC-LGQNASGNN 193 (246)
Q Consensus 148 ~~--~~~lp~~~~~~~~l~~Rr~vY~~~L~~~~~~s~~~-~~~~i~~~~ 193 (246)
|. .+||||+.+|++||++++.||+++|+|+++.|.|+ ..|+|+||.
T Consensus 76 G~~R~AYLPdn~eGr~VL~LL~~AF~~rLiFTVG~S~TtG~~d~V~WN~ 124 (159)
T 3pg6_A 76 GIQRTAYLPDNKEGRKVLKLLYRAFDQKLIFTVGYSRVLGVSDVITWND 124 (159)
T ss_dssp CEEEEEEEEESHHHHHHHHHHHHHHHTTCSEEEEEETTTTEEEEEEECS
T ss_pred CCCeEEECCCCHHHHHHHHHHHHHHHcCCEEEEeccccCCCCCEEEECC
Confidence 86 57999999999999999999999999999999976 788999985
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.43 E-value=1.3e-13 Score=97.33 Aligned_cols=67 Identities=19% Similarity=0.324 Sum_probs=56.6
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-CCCCCCCCcccccCcccccCCchhhhhhhh
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-KRNCPLCNAPFRSWFYRINLSSSDFLQQQL 100 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CPlCr~~~~~~~~~~~~~~~~~~~~~l 100 (246)
..+++.|+||++.+.+ +++++|||.||..||..|+.. ...||+|++.+......++..+.+++...+
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred CcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 4578999999999999 888999999999999999986 678999999998766666766666666554
No 3
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.40 E-value=1e-13 Score=106.67 Aligned_cols=71 Identities=18% Similarity=0.446 Sum_probs=59.6
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC-CCCCCCCccccc-CcccccCCchhhhhhhhcCCCC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLCNAPFRS-WFYRINLSSSDFLQQQLQPLIK 105 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CPlCr~~~~~-~~~~~~~~~~~~~~~~lp~~~~ 105 (246)
.+++.|+||++.+.+ ++.++|||.||..||..|+... ..||+|++.+.. ..+.++..+.+++...+|.+..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~~~ 122 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYGN 122 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTTTT
T ss_pred ccCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccccc
Confidence 457889999999998 8889999999999999998754 489999999987 5566776777888888887653
No 4
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.8e-13 Score=93.59 Aligned_cols=54 Identities=30% Similarity=0.545 Sum_probs=46.6
Q ss_pred CCCCCCCccccccccccCCCceEEc-cCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLK-VCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
....+++.|+||++.+.+ ++.+ +|+|.||..||..|++....||+|++.+....
T Consensus 10 ~~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 10 SELTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred hhcCCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 344578899999999998 5665 99999999999999988899999999987644
No 5
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=97.25 Aligned_cols=61 Identities=28% Similarity=0.597 Sum_probs=49.5
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-------CCCCCCCCcccccCcccccCCc
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-------KRNCPLCNAPFRSWFYRINLSS 92 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-------~~~CPlCr~~~~~~~~~~~~~~ 92 (246)
....+++.|+||++.+.+ ++.++|||.||..||..|+.. ...||+|+..+....+..+..+
T Consensus 7 ~~~~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l 74 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHL 74 (79)
T ss_dssp CCCCCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSS
T ss_pred hhcccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHH
Confidence 344578999999999998 677899999999999999876 5679999999876544444433
No 6
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=4.2e-13 Score=95.70 Aligned_cols=61 Identities=33% Similarity=0.678 Sum_probs=49.7
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC------CCCCCCCCcccccCcccccCCc
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL------KRNCPLCNAPFRSWFYRINLSS 92 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~------~~~CPlCr~~~~~~~~~~~~~~ 92 (246)
....+++.|+||++.+.+ +++++|+|.||..||..|+.. ...||+|+..+....+..+..+
T Consensus 14 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHV 80 (85)
T ss_dssp CCCCTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCC
T ss_pred HhCccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHH
Confidence 334578899999999998 778999999999999999876 6689999999876554455433
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=5.6e-13 Score=94.03 Aligned_cols=56 Identities=21% Similarity=0.583 Sum_probs=48.1
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCcc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFY 86 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~ 86 (246)
..++..|+||++.+.++...+.++|+|.||..||..|++....||+|++.+.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 34678999999999876556778999999999999999988999999999876543
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.35 E-value=1.3e-12 Score=98.81 Aligned_cols=52 Identities=25% Similarity=0.591 Sum_probs=42.8
Q ss_pred CCCccccccccccCCC---------------ceEEccCCCcCCHHHHHHHh-----cCCCCCCCCCcccccC
Q 046606 33 RGQKCPICLDNLTDRR---------------TAVLKVCTHAYCLECIEKWS-----NLKRNCPLCNAPFRSW 84 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~---------------~~~~~~C~H~Fc~~Ci~~w~-----~~~~~CPlCr~~~~~~ 84 (246)
+++.|+||++.|.++. +..+++|+|.||..||..|+ .....||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 5679999999996631 23478999999999999999 4567899999998764
No 9
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=7.3e-13 Score=92.48 Aligned_cols=55 Identities=29% Similarity=0.754 Sum_probs=47.3
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
...++..|+||++.+.++.....++|+|.||..||..|++....||+|++.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 3456889999999998765566779999999999999999888999999988754
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.34 E-value=7.2e-13 Score=87.09 Aligned_cols=51 Identities=31% Similarity=0.796 Sum_probs=44.1
Q ss_pred CCCCccccccccccCCCceEEcc-CCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKV-CTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~-C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
+++..|+||++.+.+.+.++.++ |+|.||..||..|++.+..||+|++.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46788999999998765566666 9999999999999999999999998763
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.8e-13 Score=92.40 Aligned_cols=50 Identities=28% Similarity=0.700 Sum_probs=45.4
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..+++.|+||++.+.+ ++.++|+|.||..||..|+.....||+|++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3467899999999998 7888999999999999999988999999998864
No 12
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.33 E-value=4.8e-13 Score=99.18 Aligned_cols=62 Identities=27% Similarity=0.632 Sum_probs=50.8
Q ss_pred CCCCccccccccccCCCceEE-ccCCCcCCHHHHHHHhcCC-CCCCCCCcccccCcccccCCchhhh
Q 046606 32 IRGQKCPICLDNLTDRRTAVL-KVCTHAYCLECIEKWSNLK-RNCPLCNAPFRSWFYRINLSSSDFL 96 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~-~~C~H~Fc~~Ci~~w~~~~-~~CPlCr~~~~~~~~~~~~~~~~~~ 96 (246)
.+++.|+||++.+.+ ++. ++|||.||..||..|+... ..||+|+..+....+..+....++.
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~ 83 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVT 83 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHH
T ss_pred CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHH
Confidence 357889999999998 788 9999999999999999877 6899999999765555554444443
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=89.76 Aligned_cols=53 Identities=19% Similarity=0.413 Sum_probs=45.1
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhc-CCCCCCCCCcccccC
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN-LKRNCPLCNAPFRSW 84 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CPlCr~~~~~~ 84 (246)
....+++.|+||++.+.+ ++.++|||.||..||..|+. ....||+|++.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CSCCCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred hcCCcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 344678999999999998 67789999999999999994 567899999988653
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=90.56 Aligned_cols=53 Identities=36% Similarity=0.739 Sum_probs=45.5
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhc---CCCCCCCCCcccccC
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN---LKRNCPLCNAPFRSW 84 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~---~~~~CPlCr~~~~~~ 84 (246)
....+++.|+||++.+.+ ++.++|||.||..||..|++ ....||+|++.+...
T Consensus 15 ~~~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred HhCccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 344678899999999998 78889999999999999996 456899999988653
No 15
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.3e-13 Score=94.75 Aligned_cols=60 Identities=27% Similarity=0.627 Sum_probs=49.1
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC------CCCCCCCCcccccCcccccCC
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL------KRNCPLCNAPFRSWFYRINLS 91 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~------~~~CPlCr~~~~~~~~~~~~~ 91 (246)
....+++.|+||++.+.+ ++.++|||.||..|+..|+.. ...||+|+..+....+..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79 (85)
T ss_dssp CCCCCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCC
T ss_pred HHccCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHH
Confidence 344578899999999998 677899999999999999876 678999999988654444433
No 16
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.32 E-value=6.7e-13 Score=99.60 Aligned_cols=67 Identities=21% Similarity=0.515 Sum_probs=52.8
Q ss_pred CCCCccccccccccCCCceEEc-cCCCcCCHHHHHHHhcCCCCCCCCCcccccC----cccccCCchhhhhhhhc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLK-VCTHAYCLECIEKWSNLKRNCPLCNAPFRSW----FYRINLSSSDFLQQQLQ 101 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~----~~~~~~~~~~~~~~~lp 101 (246)
.+++.|+||++.+.+ ++.+ +|||.||..||..|+.....||+|+..+... .+..+....+++...++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred CCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 468899999999998 6776 9999999999999999889999999998764 23344444455544444
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.32 E-value=4.6e-13 Score=92.56 Aligned_cols=55 Identities=25% Similarity=0.637 Sum_probs=46.8
Q ss_pred CCCCCccccccccccCC----CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 31 AIRGQKCPICLDNLTDR----RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~----~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
.+++..|+||++.+.++ ...+.++|||.||..||..|++....||+|++.+....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 35688999999998772 23388999999999999999998899999999987543
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.32 E-value=8.2e-13 Score=96.12 Aligned_cols=67 Identities=28% Similarity=0.421 Sum_probs=51.1
Q ss_pred CCCCCCccccccccccCCCceEEcc-CCCcCCHHHHHHHhcC--CCCCCCCCcccc-cCcccccCCchhhhhhh
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKV-CTHAYCLECIEKWSNL--KRNCPLCNAPFR-SWFYRINLSSSDFLQQQ 99 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~-C~H~Fc~~Ci~~w~~~--~~~CPlCr~~~~-~~~~~~~~~~~~~~~~~ 99 (246)
...+++.|+||++.+.+ +++++ |||.||..||..|+.. ...||+|++.+. .....++....+++...
T Consensus 9 ~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 79 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNF 79 (92)
T ss_dssp CCCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHH
T ss_pred cCCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHH
Confidence 34578999999999998 78888 9999999999999854 368999999973 33444554444444443
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.32 E-value=4.5e-13 Score=91.94 Aligned_cols=51 Identities=35% Similarity=0.974 Sum_probs=45.5
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
+++..|+||++.+.++ ++.++|||.||..|+..|++....||+|++.+...
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 4578899999999884 58899999999999999999889999999998754
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=92.42 Aligned_cols=49 Identities=22% Similarity=0.581 Sum_probs=44.9
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
..+++.|+||++.+.+ +++++|||.||..||..|++....||+|++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3467889999999998 788999999999999999988889999999986
No 21
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=90.02 Aligned_cols=55 Identities=24% Similarity=0.645 Sum_probs=46.9
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
...++..|+||++.+.+...++.++|+|.||..||..|++....||+|++.+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 3456788999999997554578899999999999999999888999999988653
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5.5e-13 Score=91.50 Aligned_cols=53 Identities=26% Similarity=0.703 Sum_probs=45.1
Q ss_pred CCCCCccccccccccCC----CceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 31 AIRGQKCPICLDNLTDR----RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~----~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..++..|+||++.+.++ ..+++++|+|.||..||..|++....||+|++.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35688999999998862 223889999999999999999988999999998753
No 23
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.31 E-value=7.6e-13 Score=105.31 Aligned_cols=69 Identities=17% Similarity=0.363 Sum_probs=57.9
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC-CCCCCCCcccccC-cccccCCchhhhhhhhcCCC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLCNAPFRSW-FYRINLSSSDFLQQQLQPLI 104 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CPlCr~~~~~~-~~~~~~~~~~~~~~~lp~~~ 104 (246)
+++.|+||++.+.+ ++.++|||.||..||..|+... ..||+|+..+... .+..+..+.+++...+|.+.
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~~ 147 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGYS 147 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTTT
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHhh
Confidence 56789999999999 8889999999999999998865 4799999999876 56667667777777776554
No 24
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6e-13 Score=93.30 Aligned_cols=53 Identities=25% Similarity=0.726 Sum_probs=46.4
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..++..|+||++.+.++...+.++|+|.||..||..|++....||+|++.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45678899999999886556778999999999999999988999999998764
No 25
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=95.91 Aligned_cols=62 Identities=26% Similarity=0.590 Sum_probs=50.7
Q ss_pred CCCccccccccccCCCceEEc-cCCCcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchhhhh
Q 046606 33 RGQKCPICLDNLTDRRTAVLK-VCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQ 97 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~~~~ 97 (246)
+++.|+||++.+.+ ++.+ +|||.||..||..|+.....||+|+..+.......+....+++.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~ 83 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVK 83 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHH
Confidence 57889999999998 6766 89999999999999998899999999998655555544444443
No 26
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.29 E-value=1.2e-12 Score=94.23 Aligned_cols=67 Identities=12% Similarity=-0.053 Sum_probs=55.2
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchhhhhhh
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQQQ 99 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~~~~~~ 99 (246)
...+++.||||++.+.+ |++++|||+||..||..|+.....||.|++.+....+.+|..+.+.+...
T Consensus 10 ~~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp TCCTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred cCchheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 34578999999999999 89999999999999999998788999999999876656665555444443
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=91.35 Aligned_cols=52 Identities=37% Similarity=0.644 Sum_probs=44.2
Q ss_pred CCCCCCCccccccccccCCCceEEcc-CCCcCCHHHHHHHhcCC--CCCCCCCccccc
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKV-CTHAYCLECIEKWSNLK--RNCPLCNAPFRS 83 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~-C~H~Fc~~Ci~~w~~~~--~~CPlCr~~~~~ 83 (246)
....+++.|+||++.+.+ ++.++ |||.||..||..|+... ..||+|++.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCSCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccCCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 344578899999999998 78888 99999999999998754 689999997543
No 28
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.29 E-value=4e-12 Score=92.55 Aligned_cols=53 Identities=25% Similarity=0.619 Sum_probs=46.3
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..++..|+||++.+.+...++.++|+|.||..||..|++....||+|++.+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34678899999999876557778999999999999999999999999998754
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.29 E-value=1e-12 Score=102.94 Aligned_cols=49 Identities=33% Similarity=0.843 Sum_probs=45.0
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
+++.|+||++.+.+ +++++|||.||..||..|+.....||+|++.+...
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 56789999999998 88999999999999999999999999999998754
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.7e-12 Score=86.09 Aligned_cols=46 Identities=39% Similarity=0.829 Sum_probs=40.2
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhc---CCCCCCCC
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN---LKRNCPLC 77 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~---~~~~CPlC 77 (246)
....+++.|+||++.+.+ ++.++|||.||..||..|++ ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445678999999999998 78889999999999999987 45689998
No 31
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.27 E-value=3e-12 Score=95.04 Aligned_cols=69 Identities=12% Similarity=-0.023 Sum_probs=57.5
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchhhhhhhhc
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQQQLQ 101 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~~~~~~lp 101 (246)
...+++.||||++.+.+ |++++|||+||..||..|+.....||.|+..+....+.+|..+...+...+.
T Consensus 25 ~~p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 93 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMR 93 (100)
T ss_dssp SCSTTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHH
Confidence 34578999999999999 8999999999999999999888899999999987666666555555555543
No 32
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.27 E-value=2.2e-12 Score=84.65 Aligned_cols=51 Identities=29% Similarity=0.647 Sum_probs=44.0
Q ss_pred CCCCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 32 IRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
.++..|+||++.+.+. ..++.++|+|.||..||..|+.....||+|++.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4578899999998653 34788899999999999999998899999998764
No 33
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.26 E-value=3.5e-12 Score=94.31 Aligned_cols=68 Identities=18% Similarity=0.083 Sum_probs=57.3
Q ss_pred CCCCCCccccccccccCCCceEEccCC-CcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchhhhhhhh
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCT-HAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQQQL 100 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~-H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~~~~~~l 100 (246)
...+++.||||++.|.+ |++++|| |+||..||..|+.....||+|++.+....+.+|..+.+.+...+
T Consensus 18 ~~p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp SCCTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred cCcHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 34578999999999999 8999999 99999999999988889999999998766666656666665554
No 34
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.26 E-value=1.3e-12 Score=88.26 Aligned_cols=53 Identities=26% Similarity=0.658 Sum_probs=45.1
Q ss_pred CCCccccccccccCC----CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 33 RGQKCPICLDNLTDR----RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~----~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
++..|+||++.+.++ ..++.++|||.||..|+..|++.+..||+|++.+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 577899999998762 22488899999999999999998889999999987543
No 35
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.24 E-value=2.1e-12 Score=96.91 Aligned_cols=52 Identities=33% Similarity=0.773 Sum_probs=44.4
Q ss_pred CCCCCccccccccccCCC---------------ceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 31 AIRGQKCPICLDNLTDRR---------------TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~---------------~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
+.+++.|+||++.|.+.. ..++++|+|.||..||..|+..+..||+|++.+.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 446889999999998641 2466799999999999999999999999999875
No 36
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.6e-12 Score=89.49 Aligned_cols=52 Identities=25% Similarity=0.692 Sum_probs=43.2
Q ss_pred CCCCccccccccccCC-----------C-ceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDR-----------R-TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-----------~-~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.+++.|+||++.|.+. + ..++.+|+|.||..||.+|++.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 4678899999999652 2 34555799999999999999999999999998764
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=5.1e-12 Score=94.97 Aligned_cols=65 Identities=29% Similarity=0.644 Sum_probs=51.9
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC---CCCCCCCcccccCcccccCCchhhhhhhh
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK---RNCPLCNAPFRSWFYRINLSSSDFLQQQL 100 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~---~~CPlCr~~~~~~~~~~~~~~~~~~~~~l 100 (246)
+...|+||++.+.+ ++.++|||.||..||..|+... ..||+|+..+.......+.....++...+
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred CCCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 46789999999998 6778999999999999998764 48999999998766555655555544443
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.9e-12 Score=82.56 Aligned_cols=45 Identities=31% Similarity=0.898 Sum_probs=38.6
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhc---CCCCCCCC
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN---LKRNCPLC 77 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~---~~~~CPlC 77 (246)
...++..|+||++.+.+ ++.++|+|.||..||..|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34568899999999998 67789999999999999954 45789998
No 39
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.21 E-value=1.2e-12 Score=99.32 Aligned_cols=50 Identities=26% Similarity=0.674 Sum_probs=44.1
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-CCCCCCCCccccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-KRNCPLCNAPFRS 83 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CPlCr~~~~~ 83 (246)
..+++.|+||++.+.+ ++.++|||.||..||..|+.. ...||+|++.+..
T Consensus 12 ~~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3467889999999998 788899999999999999876 5689999999864
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=8.6e-12 Score=84.87 Aligned_cols=55 Identities=29% Similarity=0.701 Sum_probs=43.5
Q ss_pred CCCccccccc-cccCCC-ceEEccCCCcCCHHHHHHHhc-CCCCCCCCCcccccCccc
Q 046606 33 RGQKCPICLD-NLTDRR-TAVLKVCTHAYCLECIEKWSN-LKRNCPLCNAPFRSWFYR 87 (246)
Q Consensus 33 ~~~~C~ICl~-~~~~~~-~~~~~~C~H~Fc~~Ci~~w~~-~~~~CPlCr~~~~~~~~~ 87 (246)
++..|+||++ .+.++. ..++++|||.||..||..|+. ....||+|++.+....+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 5788999999 888742 125789999999999999954 456799999998765443
No 41
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=88.35 Aligned_cols=54 Identities=30% Similarity=0.707 Sum_probs=45.5
Q ss_pred CCCCCCccccccccccCCC-ceEEccCCCcCCHHHHHHHhcCC---CCCCCCCccccc
Q 046606 30 PAIRGQKCPICLDNLTDRR-TAVLKVCTHAYCLECIEKWSNLK---RNCPLCNAPFRS 83 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~-~~~~~~C~H~Fc~~Ci~~w~~~~---~~CPlCr~~~~~ 83 (246)
...++..|+||++.+.+.. .++.++|||.||..||..|++.. ..||+|++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3456889999999998743 27888999999999999998765 789999998764
No 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=6.6e-12 Score=86.59 Aligned_cols=51 Identities=35% Similarity=0.968 Sum_probs=44.7
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
...++..|+||++.+.+ +.++|+|.||..||..|+.....||+|++.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 34568899999999876 6789999999999999999889999999988753
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.16 E-value=7.7e-12 Score=95.32 Aligned_cols=57 Identities=32% Similarity=0.542 Sum_probs=48.5
Q ss_pred ccCCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCC-CCCCCCcccccCcc
Q 046606 27 VISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKR-NCPLCNAPFRSWFY 86 (246)
Q Consensus 27 ~~~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~-~CPlCr~~~~~~~~ 86 (246)
......+++.|+||++.+.+ ++.++|||.||..||..|+.... .||+|+..+.....
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 11 FDPPLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred hccCCCCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence 44556678999999999998 78899999999999999987654 89999999876443
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.16 E-value=6.7e-12 Score=101.07 Aligned_cols=67 Identities=25% Similarity=0.576 Sum_probs=50.8
Q ss_pred CCCccccccccccCCCceEEc-cCCCcCCHHHHHHHhcC-CCCCCCCCcccccC-cccccCCchhhhhhhhcC
Q 046606 33 RGQKCPICLDNLTDRRTAVLK-VCTHAYCLECIEKWSNL-KRNCPLCNAPFRSW-FYRINLSSSDFLQQQLQP 102 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~-~~~CPlCr~~~~~~-~~~~~~~~~~~~~~~lp~ 102 (246)
+++.|+||++.+.+ ++.+ +|||.||..||..|+.. ...||+|+..+... .+.++....+++....+.
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 46689999999998 6665 99999999999999987 67899999998643 344554555555555443
No 45
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.16 E-value=4.3e-12 Score=99.92 Aligned_cols=51 Identities=22% Similarity=0.416 Sum_probs=44.2
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCC-CCCCCCcccc
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKR-NCPLCNAPFR 82 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~-~CPlCr~~~~ 82 (246)
...++++.|+||++.+.+ ++.++|||.||..||..|+.... .||+|+..+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 344678999999999999 88899999999999999987654 8999998753
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=8.5e-12 Score=94.92 Aligned_cols=60 Identities=25% Similarity=0.599 Sum_probs=48.9
Q ss_pred CCCccccccccccCCCceEEc-cCCCcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchhhhh
Q 046606 33 RGQKCPICLDNLTDRRTAVLK-VCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQ 97 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~~~~ 97 (246)
+++.|+||++.+.+ ++.+ +|||.||..||..|+. ..||+|+..+....+..+....+++.
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~ 81 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQ 81 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHH
T ss_pred hCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHH
Confidence 57889999999998 6777 9999999999999987 78999999986655555544444444
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=2.2e-11 Score=93.68 Aligned_cols=54 Identities=26% Similarity=0.647 Sum_probs=46.5
Q ss_pred CCCCccccccccccCC----CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 32 IRGQKCPICLDNLTDR----RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~----~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
.+++.|+||++.+.++ ..++.++|||.||..||.+|++.+..||+|++.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 4678999999999872 22389999999999999999999999999999987654
No 48
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=3.4e-11 Score=88.18 Aligned_cols=68 Identities=19% Similarity=0.383 Sum_probs=53.3
Q ss_pred CCCCCccccccccccCCCceEEcc-CCCcCCHHHHHHHhcCC------CCCCC--CCcc-cccCcccccCCchhhhhhhh
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKV-CTHAYCLECIEKWSNLK------RNCPL--CNAP-FRSWFYRINLSSSDFLQQQL 100 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~-C~H~Fc~~Ci~~w~~~~------~~CPl--Cr~~-~~~~~~~~~~~~~~~~~~~l 100 (246)
..+++.||||++.|.+ |+.++ |||+||..||..|+... ..||+ |+.. +....+.+|..+...+....
T Consensus 4 ~~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHN 80 (94)
T ss_dssp CSSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHH
T ss_pred CCcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHH
Confidence 3578999999999999 88885 99999999999998643 58999 9877 66555666656666665554
Q ss_pred c
Q 046606 101 Q 101 (246)
Q Consensus 101 p 101 (246)
.
T Consensus 81 ~ 81 (94)
T 2yu4_A 81 K 81 (94)
T ss_dssp T
T ss_pred H
Confidence 3
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.08 E-value=8.1e-11 Score=83.31 Aligned_cols=54 Identities=20% Similarity=0.519 Sum_probs=41.4
Q ss_pred CCCCCCccccccccccCCCceEEc--cCCCcCCHHHHHHHh-cCCCCCCCCCcccccC
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLK--VCTHAYCLECIEKWS-NLKRNCPLCNAPFRSW 84 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~--~C~H~Fc~~Ci~~w~-~~~~~CPlCr~~~~~~ 84 (246)
...++..||||++.+.... +... +|||.||..|+..++ .....||.||+.+...
T Consensus 7 ~~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 3457889999999885321 2333 499999999999965 4467899999999764
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.06 E-value=5.3e-11 Score=90.23 Aligned_cols=51 Identities=29% Similarity=0.642 Sum_probs=45.0
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-CCCCCCCCcccccCc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-KRNCPLCNAPFRSWF 85 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CPlCr~~~~~~~ 85 (246)
.+++.|+||++.+.+ ++.++|||.||..||..|+.. ...||+|+..+....
T Consensus 21 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 21 VKSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cCCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 357889999999998 788999999999999999876 678999999987643
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=6.2e-11 Score=102.24 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=57.0
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC-CCCCCCCCcccccCcccccCCchhhhhhhhc
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-KRNCPLCNAPFRSWFYRINLSSSDFLQQQLQ 101 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CPlCr~~~~~~~~~~~~~~~~~~~~~lp 101 (246)
...+.+.||||++.+.+ |++++|||+||..||..|+.. ...||+|+.++......+|..+...+...+.
T Consensus 204 ~~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred CCCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 34568999999999999 899999999999999999875 4459999999987666677666666666664
No 52
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.05 E-value=1.4e-11 Score=93.81 Aligned_cols=55 Identities=31% Similarity=0.690 Sum_probs=3.3
Q ss_pred CCCCCCCccccccccccCCC---------------ceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 29 SPAIRGQKCPICLDNLTDRR---------------TAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~---------------~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..+.+++.|+||++.|.++. ..+.++|+|.||..||..|+..+..||+|++.+..
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp EECCCC----------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 34456789999999997631 12345899999999999999999999999998753
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.99 E-value=1.6e-10 Score=78.64 Aligned_cols=49 Identities=22% Similarity=0.602 Sum_probs=43.3
Q ss_pred CCCCccccccccccCCCceEEc--cCCCc-CCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLK--VCTHA-YCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~--~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.++..|+||++...+ ++.+ +|||. ||..|+..|.+....||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 467789999999988 6766 99999 8999999999888899999998864
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=8.5e-11 Score=77.76 Aligned_cols=46 Identities=28% Similarity=0.688 Sum_probs=39.9
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.+++.|+||++.+.+ ++.++|||.||..|+..| ...||+|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 467889999999998 788999999999998773 5689999998764
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.97 E-value=1.4e-10 Score=81.06 Aligned_cols=45 Identities=29% Similarity=0.681 Sum_probs=40.5
Q ss_pred CCCccccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
++..|+||++.+.+ +++++|||. ||..|+..| ..||+|++.+...
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 56789999999998 889999999 999999988 7899999988753
No 56
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.96 E-value=2.6e-10 Score=92.97 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=56.1
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC-CCCCCCCcccccCcccccCCchhhhhhhh
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLCNAPFRSWFYRINLSSSDFLQQQL 100 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CPlCr~~~~~~~~~~~~~~~~~~~~~l 100 (246)
....+.+.||||++.+.+ |++++|||+||..||..|+... ..||.|+.++....+.+|..+...+...+
T Consensus 101 ~~ip~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 101 REIPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 344678999999999999 8999999999999999998653 46999999998766666666666655544
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.95 E-value=1.9e-10 Score=92.84 Aligned_cols=56 Identities=32% Similarity=0.561 Sum_probs=48.1
Q ss_pred ccCCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC-CCCCCCCcccccCc
Q 046606 27 VISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-RNCPLCNAPFRSWF 85 (246)
Q Consensus 27 ~~~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CPlCr~~~~~~~ 85 (246)
.....++++.|+||++.+.+ ++.++|||.||..||..|+... ..||+|+..+....
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred hccCCCCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 44566788999999999999 7889999999999999998764 48999999987643
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.91 E-value=2.4e-10 Score=87.78 Aligned_cols=55 Identities=25% Similarity=0.638 Sum_probs=46.5
Q ss_pred CCCCCccccccccccCC----CceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 31 AIRGQKCPICLDNLTDR----RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~----~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
.+++..|+||++.+.++ ...+.++|||.||..||.+|++....||+|+..+....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 35688899999998762 22388899999999999999999999999999987543
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.90 E-value=4.7e-10 Score=76.01 Aligned_cols=49 Identities=18% Similarity=0.516 Sum_probs=42.6
Q ss_pred CCCCccccccccccCCCceEEc--cCCCc-CCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLK--VCTHA-YCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~--~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
+.+..|+||++...+ ++++ +|||. ||..|+..|.+....||+|++.+..
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 356789999999988 6666 99998 9999999988878899999998864
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=5.4e-10 Score=78.24 Aligned_cols=45 Identities=29% Similarity=0.681 Sum_probs=38.7
Q ss_pred CCCccccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
++..|+||++.+.+ +++++|||. ||..|+... ..||+|++.+...
T Consensus 24 ~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 46679999999998 788999999 999999643 6899999988753
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.87 E-value=1.3e-09 Score=98.50 Aligned_cols=49 Identities=29% Similarity=0.781 Sum_probs=43.9
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhc-CCCCCCCCCcccccC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN-LKRNCPLCNAPFRSW 84 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~-~~~~CPlCr~~~~~~ 84 (246)
....|+||++.+.+ ++.++|||.||..|+..|.. ....||+||+.+...
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 45789999999988 89999999999999999998 678899999988753
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=9.5e-10 Score=78.13 Aligned_cols=52 Identities=25% Similarity=0.590 Sum_probs=42.3
Q ss_pred CCCCCccccccccccCCCceEEccCC-----CcCCHHHHHHHhcCC--CCCCCCCccccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCT-----HAYCLECIEKWSNLK--RNCPLCNAPFRS 83 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~-----H~Fc~~Ci~~w~~~~--~~CPlCr~~~~~ 83 (246)
..++..|.||++.+.+.. .++++|. |.||..||.+|+..+ ..||+|+..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSS-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCC-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 346788999999886433 4678996 999999999998765 589999999864
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.8e-09 Score=92.44 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=49.0
Q ss_pred CCCCccccccccccCCCceEE-ccCCCcCCHHHHHHHhcCC--CCCCC--CCcccccCcccccCCchhh
Q 046606 32 IRGQKCPICLDNLTDRRTAVL-KVCTHAYCLECIEKWSNLK--RNCPL--CNAPFRSWFYRINLSSSDF 95 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~-~~C~H~Fc~~Ci~~w~~~~--~~CPl--Cr~~~~~~~~~~~~~~~~~ 95 (246)
..++.||||++.|.+ |+. ..|||.||..||..|+... ..||+ |++.+....+.++..+..+
T Consensus 179 ~~el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~l 244 (267)
T 3htk_C 179 KIELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELR 244 (267)
T ss_dssp BCCSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred ceeeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHH
Confidence 357789999999999 776 4999999999999988754 46999 9999877666666544433
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=9.6e-09 Score=71.73 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=41.8
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC--CCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK--RNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~--~~CPlCr~~~~~ 83 (246)
+....|.||.+.+... ..-..|+|.||..||..|++.. .+||+|++.+..
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3567899999999864 3334899999999999999877 789999988764
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=6.5e-09 Score=71.44 Aligned_cols=48 Identities=23% Similarity=0.638 Sum_probs=41.1
Q ss_pred CCCCCCccccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
...++..|+||++...+ +++++|+|. ||..|+.. ...||+|++.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 34567889999999988 899999999 99999984 36899999988753
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.70 E-value=3.6e-09 Score=74.91 Aligned_cols=45 Identities=20% Similarity=0.673 Sum_probs=39.5
Q ss_pred CCCccccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
++..|+||++.+.+ +++++|||. ||..|+..| ..||+|++.+...
T Consensus 17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 46689999999998 899999999 999999876 3899999998763
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=8.6e-09 Score=75.09 Aligned_cols=52 Identities=19% Similarity=0.646 Sum_probs=39.5
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC--------CCCCCC--CCcc--ccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL--------KRNCPL--CNAP--FRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~--------~~~CPl--Cr~~--~~~ 83 (246)
.+.+.|+||++.+..+....+.+|+|.||..||..++.. ...||. |+.. +..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 357889999999887533333579999999999996542 236999 9988 554
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.58 E-value=1.9e-08 Score=67.67 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=44.6
Q ss_pred CCccccccccccCCCceEEc-cCCCcCCHHHHHHHhcCCCCCCCCCcccccCcccc
Q 046606 34 GQKCPICLDNLTDRRTAVLK-VCTHAYCLECIEKWSNLKRNCPLCNAPFRSWFYRI 88 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~ 88 (246)
.+.|+||++.+.+ +++. +|||.|+..||.+|+..+.+||++++.+....+.+
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 4789999999999 7888 99999999999999987778999999987654433
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.49 E-value=2.4e-08 Score=89.31 Aligned_cols=45 Identities=29% Similarity=0.809 Sum_probs=40.5
Q ss_pred CCCccccccccccCCCceEEccCCCc-CCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHA-YCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
++..|+||++.+.+ ++.++|||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 57889999999998 889999999 999999987 6899999998753
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.30 E-value=4.1e-07 Score=60.80 Aligned_cols=49 Identities=18% Similarity=0.588 Sum_probs=38.8
Q ss_pred CCCCCccccccccccCCCceEEccCC--C---cCCHHHHHHHhcC--CCCCCCCCcccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCT--H---AYCLECIEKWSNL--KRNCPLCNAPFR 82 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~--H---~Fc~~Ci~~w~~~--~~~CPlCr~~~~ 82 (246)
.++...|.||++...+ +...||. + .||..||..|+.. +..||+|+..|.
T Consensus 3 ~~~~~~CrIC~~~~~~---~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELGN---ERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECSC---CCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCCC---ceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567889999998554 3457865 4 7999999999864 567999999875
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.08 E-value=1.5e-06 Score=63.29 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=40.7
Q ss_pred ccccccccccCCCceEEccCCCcCCHHHHHHHhcC-CCCCCCCCcccccCc
Q 046606 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-KRNCPLCNAPFRSWF 85 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CPlCr~~~~~~~ 85 (246)
.|++|--++..- ..+.+|+|.||++|+..|.+. ...||.|+..+..+.
T Consensus 3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 589999888773 778899999999999998754 678999999987654
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.04 E-value=8.8e-07 Score=78.44 Aligned_cols=53 Identities=23% Similarity=0.531 Sum_probs=40.2
Q ss_pred CCCCccccccccccC-CCce----EEccCCCcCCHHHHHHHhcCC-----------CCCCCCCcccccC
Q 046606 32 IRGQKCPICLDNLTD-RRTA----VLKVCTHAYCLECIEKWSNLK-----------RNCPLCNAPFRSW 84 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~-~~~~----~~~~C~H~Fc~~Ci~~w~~~~-----------~~CPlCr~~~~~~ 84 (246)
+....|+||++.+.+ +..+ ....|+|.||..||.+|+... ..||.|++++...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 355679999998876 3222 234899999999999998642 3699999988653
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.26 E-value=0.00031 Score=59.46 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=40.5
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC--CCCCCCCcccccC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK--RNCPLCNAPFRSW 84 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~--~~CPlCr~~~~~~ 84 (246)
.-..|.||.+.+..+ ..-..|+|.||..|+..|++.. ..||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999998864 3344599999999999998764 4899999987654
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.63 E-value=0.0057 Score=43.80 Aligned_cols=49 Identities=27% Similarity=0.685 Sum_probs=40.1
Q ss_pred CCCCccccccccccCCCceEEccC-CCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVC-THAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C-~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
-..+.|..|.-..++ +..| .|.+|..|+..++..+..||+|+.++..+.
T Consensus 26 ~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 357889999987765 3445 678999999999999999999999987643
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.35 E-value=0.0055 Score=44.32 Aligned_cols=32 Identities=31% Similarity=0.678 Sum_probs=26.0
Q ss_pred CCCcccccccc-ccCCCceEE--ccCCCcCCHHHHHHH
Q 046606 33 RGQKCPICLDN-LTDRRTAVL--KVCTHAYCLECIEKW 67 (246)
Q Consensus 33 ~~~~C~ICl~~-~~~~~~~~~--~~C~H~Fc~~Ci~~w 67 (246)
++..|+||++. +.+ ++. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~---av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD---AVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCB---CCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCC---ceEECCcCChHHhHHHCHHH
Confidence 46889999976 444 455 899999999999983
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.38 E-value=0.053 Score=54.05 Aligned_cols=70 Identities=10% Similarity=-0.053 Sum_probs=58.0
Q ss_pred cCCCCCCCccccccccccCCCceEEccCC-CcCCHHHHHHHhcCCCCCCCCCcccccCcccccCCchhhhhhhh
Q 046606 28 ISPAIRGQKCPICLDNLTDRRTAVLKVCT-HAYCLECIEKWSNLKRNCPLCNAPFRSWFYRINLSSSDFLQQQL 100 (246)
Q Consensus 28 ~~~~~~~~~C~ICl~~~~~~~~~~~~~C~-H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~~~~~~~~~~~~~~~l 100 (246)
.....+++.|||-++.+.+ |++++-| ++|-..+|.+|+....+||.=++++......+|..+...+...+
T Consensus 885 ~~~iP~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 3455679999999999999 8999998 58999999999998889999999998776667766655555554
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.62 E-value=0.094 Score=36.37 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=27.9
Q ss_pred CCCCccccccccccCCCceEEc-cCCCcCCHHHHHHHhcC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLK-VCTHAYCLECIEKWSNL 70 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~-~C~H~Fc~~Ci~~w~~~ 70 (246)
...+.|.+|.+.+++...+.-. .=.|.||+.|-....+.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4578899999999985322111 12688999999887653
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=88.86 E-value=0.47 Score=42.19 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=45.7
Q ss_pred CCccccccccccCCCceEEccCCCcCCH--HHHHHHhcC--CCCCCCCCcccccCcccccCCchhhhhhhhcCCCCCCcc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCL--ECIEKWSNL--KRNCPLCNAPFRSWFYRINLSSSDFLQQQLQPLIKDKTF 109 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~--~Ci~~w~~~--~~~CPlCr~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~ 109 (246)
.+.|||-...+..| +....|.|.-|+ .-+..+... .-.||+|.+.+....+.++ .+..+.|...++...+
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID----~~~~~IL~~~~~v~~I 288 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILD----GLFMEILNDCSDVDEI 288 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEB----HHHHHHHTTCSSCCEE
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEc----HHHHHHHHhCCCCCEE
Confidence 45799999999885 667789999554 444444433 3469999998876555444 3344444433444444
Q ss_pred cc
Q 046606 110 IS 111 (246)
Q Consensus 110 ~~ 111 (246)
.+
T Consensus 289 ~v 290 (360)
T 4fo9_A 289 KF 290 (360)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.71 E-value=0.77 Score=32.39 Aligned_cols=51 Identities=27% Similarity=0.605 Sum_probs=37.6
Q ss_pred CCCccccccccccCC---C-ceEEccCCCcCCHHHHHH-HhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDR---R-TAVLKVCTHAYCLECIEK-WSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~---~-~~~~~~C~H~Fc~~Ci~~-w~~~~~~CPlCr~~~~~ 83 (246)
....|.||-+.+--. + ++.-..|+-..|..|+.- .......||.|++.|..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 457899999985432 1 122346888899999987 55667889999999974
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=88.06 E-value=0.51 Score=31.45 Aligned_cols=47 Identities=19% Similarity=0.449 Sum_probs=33.4
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC----CCCCCCCccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK----RNCPLCNAPF 81 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CPlCr~~~ 81 (246)
..+..|.||.+.= ++..-..|...||..|+...+... -.||.|....
T Consensus 10 ~~~~~C~vC~~~~---~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDGT---DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCCT---TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCCC---eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3567799998642 235556799999999998765543 2599997643
No 81
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.96 E-value=0.25 Score=44.05 Aligned_cols=54 Identities=19% Similarity=0.390 Sum_probs=38.2
Q ss_pred CCccccccccccCCCceEEccCCCcCCHH--HHHHHhcC--CCCCCCCCcccccCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLE--CIEKWSNL--KRNCPLCNAPFRSWFYRIN 89 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~--Ci~~w~~~--~~~CPlCr~~~~~~~~~~~ 89 (246)
.+.|||-...+..| +....|.|.-|++ -+..+... .-.||+|.+.+....+.++
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID 306 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAIS 306 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEB
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEc
Confidence 46799999999885 6677899985554 44444333 3469999998876555544
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=79.96 E-value=0.8 Score=29.82 Aligned_cols=46 Identities=22% Similarity=0.592 Sum_probs=31.6
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC----CCCCCCCCc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----KRNCPLCNA 79 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CPlCr~ 79 (246)
...+..|.||.+. .++..-..|...||..|+..-+.. .-.||.|..
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3467889999974 222444578889999999874332 235999964
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.96 E-value=1.5 Score=27.18 Aligned_cols=44 Identities=23% Similarity=0.610 Sum_probs=28.8
Q ss_pred ccccccccccCCCceEEccCCCcCCHHHHHHHhcC----CCCCCCCCc
Q 046606 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----KRNCPLCNA 79 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CPlCr~ 79 (246)
.|.||.+.-....+..-..|...||..|+..-+.. .-.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48889875433233445578889999999753332 234998864
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=76.47 E-value=0.64 Score=30.33 Aligned_cols=48 Identities=21% Similarity=0.513 Sum_probs=31.7
Q ss_pred CCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC----CCCCCCCCcc
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----KRNCPLCNAP 80 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CPlCr~~ 80 (246)
.+..+..|.||.+.- ++..-..|...||..|+..-+.. .-.||.|...
T Consensus 5 ~d~~~~~C~vC~~~g---~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCCS---SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCCC---CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345678899998632 22444468889999998753332 2349999653
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=72.38 E-value=0.98 Score=30.50 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=33.3
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhc----CCCCCCCCCcccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN----LKRNCPLCNAPFR 82 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~----~~~~CPlCr~~~~ 82 (246)
.+...|+||...-.......-..|...||..|+..-.. ....||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 45667999987654322233346888899999965332 2346999976554
No 86
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=72.34 E-value=0.85 Score=26.29 Aligned_cols=14 Identities=36% Similarity=0.918 Sum_probs=9.0
Q ss_pred CCCccccccccccC
Q 046606 33 RGQKCPICLDNLTD 46 (246)
Q Consensus 33 ~~~~C~ICl~~~~~ 46 (246)
+.+.||||+..+.+
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 45667777766655
No 87
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=70.72 E-value=1.2 Score=29.02 Aligned_cols=43 Identities=28% Similarity=0.666 Sum_probs=29.5
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCC
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLC 77 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlC 77 (246)
..|--|+..|.+.....-..|++.||.+|=.=....-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998663112245799999999954334444679887
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=69.98 E-value=1.2 Score=35.53 Aligned_cols=46 Identities=15% Similarity=0.401 Sum_probs=32.1
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC----CCCCCCCCcc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----KRNCPLCNAP 80 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CPlCr~~ 80 (246)
..++.|.+|.+. ++...-..|...||..|+..-+.. .-.||.|+..
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 356789999865 223555578889999998764443 2359999764
No 89
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.64 E-value=2.6 Score=29.67 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=34.8
Q ss_pred ccCCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC----CCCCCCCcc
Q 046606 27 VISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK----RNCPLCNAP 80 (246)
Q Consensus 27 ~~~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CPlCr~~ 80 (246)
.....+.+..|.+|.+.- ++..-..|.-.||..|+..-+... -.||.|...
T Consensus 18 ~~~~d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCSSSSSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccccCCCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 344456788999999752 234555788889999997644332 359999753
No 90
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=68.91 E-value=6.3 Score=27.47 Aligned_cols=35 Identities=17% Similarity=0.487 Sum_probs=24.1
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHH
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKW 67 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w 67 (246)
..|..|.||-..-.+. .---..|+-.||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t~~~-l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAES-LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSSC-CSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccccccc-eeccccccccccHhhcccc
Confidence 4688999998543331 1112257899999999995
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=66.96 E-value=1.2 Score=36.22 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC----CCCCCCCccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK----RNCPLCNAPF 81 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CPlCr~~~ 81 (246)
+..+..|.+|.+.= ++..-..|...||..|+..-+... -.||.|...-
T Consensus 4 d~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34577899998642 123444788899999987644432 3599998654
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.44 E-value=2.4 Score=30.77 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=31.3
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC----CCCCCCCC
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----KRNCPLCN 78 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CPlCr 78 (246)
...++.|.||.+.-...+...-..|...||..|+...... .-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3578899999876332122344689999999999775432 23466654
No 93
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.03 E-value=0.73 Score=32.71 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=33.1
Q ss_pred CCCCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC----CCCCCCCCc
Q 046606 29 SPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----KRNCPLCNA 79 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CPlCr~ 79 (246)
+...++..|.||...-....+..-..|...||..|+..-+.. .-.||.|..
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 344567789999986433223445578889999998643222 224988854
No 94
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=62.19 E-value=1.1 Score=29.50 Aligned_cols=45 Identities=20% Similarity=0.460 Sum_probs=30.7
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC----CCCCCCCCc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----KRNCPLCNA 79 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CPlCr~ 79 (246)
..+..|.||.+.- .+..-..|...||..|+..-+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~g---~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGG---ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCS---SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCC---CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4688899999752 23555578889999998753322 224888854
No 95
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.94 E-value=0.67 Score=29.57 Aligned_cols=45 Identities=20% Similarity=0.543 Sum_probs=29.1
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCC----CCCCCCC
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK----RNCPLCN 78 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CPlCr 78 (246)
...+..|.||.+.- .+..-..|...||..|+..-+... -.||.|.
T Consensus 6 ~~~~~~C~vC~~~g---~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKSG---QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCSS---CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCCC---eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 34678899999752 234555788889999987533222 2377664
No 96
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.74 E-value=4.8 Score=27.61 Aligned_cols=38 Identities=18% Similarity=0.450 Sum_probs=24.8
Q ss_pred cCCCCCCCccccccccccCC-CceEEccCCCcCCHHHHH
Q 046606 28 ISPAIRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIE 65 (246)
Q Consensus 28 ~~~~~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~ 65 (246)
..++.+...|.+|...|.-- ...--..||..||..|..
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cccCccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 33444566899999988641 113334799999999854
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=57.20 E-value=1.6 Score=28.20 Aligned_cols=46 Identities=22% Similarity=0.611 Sum_probs=30.7
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcC----CCCCCCCCcc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----KRNCPLCNAP 80 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CPlCr~~ 80 (246)
..+..|.||.+. ..+..-..|...||..|+..-+.. .-.||.|...
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 357889999974 223555578888999998753322 2248888543
No 98
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=52.77 E-value=8.7 Score=28.58 Aligned_cols=34 Identities=24% Similarity=0.544 Sum_probs=23.7
Q ss_pred CCCCccccccccccCC-CceEEccCCCcCCHHHHH
Q 046606 32 IRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIE 65 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~ 65 (246)
.+...|.+|...|.-- ...---.||+.||..|..
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3456799999988641 113345799999999853
No 99
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=52.41 E-value=8.1 Score=26.53 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCCCCCCccccccccccCC-CceEEccCCCcCCHHHHH
Q 046606 29 SPAIRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIE 65 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~ 65 (246)
.++.+...|.+|...|.-- ...--..||..||..|..
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 3445667899999988642 113344799999999854
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.35 E-value=8.4 Score=27.14 Aligned_cols=50 Identities=16% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCCCCCccccccccccCCCceEEcc--CC-CcCCHHHHHHHh--cCCCCCCCCCccc
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKV--CT-HAYCLECIEKWS--NLKRNCPLCNAPF 81 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~--C~-H~Fc~~Ci~~w~--~~~~~CPlCr~~~ 81 (246)
+..+...| ||.+.... ....-.. |. ..||+.|+.--. .....||.|+..-
T Consensus 32 d~~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 33456778 99986432 2222234 55 579999986211 1234699997643
No 101
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=51.93 E-value=9 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=22.6
Q ss_pred CCCccccccccccCC-CceEEccCCCcCCHHHH
Q 046606 33 RGQKCPICLDNLTDR-RTAVLKVCTHAYCLECI 64 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci 64 (246)
++..|.+|...|.-- ...--..||..||..|.
T Consensus 10 ~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 10 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred cCCcccCCCCccCCccccccCCCCCEEEccccc
Confidence 456899999988641 11333479999999885
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=51.46 E-value=10 Score=25.27 Aligned_cols=50 Identities=16% Similarity=0.336 Sum_probs=28.9
Q ss_pred CCCCCCccccccccccCCCceEEcc--CC-CcCCHHHHHHHh--cCCCCCCCCCccc
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKV--CT-HAYCLECIEKWS--NLKRNCPLCNAPF 81 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~--C~-H~Fc~~Ci~~w~--~~~~~CPlCr~~~ 81 (246)
+..+...| ||.+.-.. ....-.. |. ..||+.|+.--. ...-.||.|...-
T Consensus 12 d~~~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 33466778 89886432 1111224 65 579999986211 1234599997643
No 103
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=50.87 E-value=9.6 Score=37.24 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=48.3
Q ss_pred CCCCccccccccccCC-------CceEEccCCCcC--------------------CHHHHHHHhcCC--------CCCCC
Q 046606 32 IRGQKCPICLDNLTDR-------RTAVLKVCTHAY--------------------CLECIEKWSNLK--------RNCPL 76 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-------~~~~~~~C~H~F--------------------c~~Ci~~w~~~~--------~~CPl 76 (246)
.+-..|+-|+.++.++ -..-.+.||..| |..|-.++.... ..||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 4567899999998886 123345677766 999999986531 36999
Q ss_pred CCcccccCcccccCCchhhhhhhhcCCCCCCcccc
Q 046606 77 CNAPFRSWFYRINLSSSDFLQQQLQPLIKDKTFIS 111 (246)
Q Consensus 77 Cr~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 111 (246)
|.-.+.-..........+-+.....-+..++.+-+
T Consensus 184 CGP~l~l~~~~~~~~~~~~i~~a~~~l~~G~iva~ 218 (772)
T 4g9i_A 184 CGPSYRLYTSDGQEIYGDPLRKAAELIDKGYIVAI 218 (772)
T ss_dssp TSCCEEEESSSCBCCTTHHHHHHHHHHTTSCCEEE
T ss_pred CCceEEEEcCCCCeechHHHHHHHHHHHcCCEEEE
Confidence 98766433222222223344444444444444433
No 104
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=50.45 E-value=1.3 Score=30.53 Aligned_cols=41 Identities=32% Similarity=0.728 Sum_probs=25.3
Q ss_pred CCCcccc--ccccccCC---CceEEc-----cCCCcCCHHHHHHHhcCCCCCC
Q 046606 33 RGQKCPI--CLDNLTDR---RTAVLK-----VCTHAYCLECIEKWSNLKRNCP 75 (246)
Q Consensus 33 ~~~~C~I--Cl~~~~~~---~~~~~~-----~C~H~Fc~~Ci~~w~~~~~~CP 75 (246)
.-..||- |...+... ....-. .|++.||+.|...|.. ..|.
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCSS
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Cccc
Confidence 3566876 76554321 112222 6899999999988866 4453
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=50.41 E-value=25 Score=25.34 Aligned_cols=46 Identities=17% Similarity=0.379 Sum_probs=28.8
Q ss_pred CCCcccccccccc------CCCceEEccCCCcCCHHHHHH---H----hcCCCCCCCCC
Q 046606 33 RGQKCPICLDNLT------DRRTAVLKVCTHAYCLECIEK---W----SNLKRNCPLCN 78 (246)
Q Consensus 33 ~~~~C~ICl~~~~------~~~~~~~~~C~H~Fc~~Ci~~---w----~~~~~~CPlCr 78 (246)
....|.+|+..-. ..++..-..|+..||..|+.. . ....-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 5678999987521 113344557999999999942 1 12334577665
No 106
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.33 E-value=1.3 Score=31.43 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=24.7
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCc--EEEEecce
Q 046606 198 RLVQRIDPWIRRELQALLGGPRS--IHYCSCGL 228 (246)
Q Consensus 198 ~~~~Rl~~Wl~REL~v~~~~~~~--~~~~~~~~ 228 (246)
.-+..+.|||...|.-++|..|. |.|++..|
T Consensus 13 v~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l 45 (92)
T 1x4q_A 13 RELDELKPWIEKTVKRVLGFSEPTVVTAALNCV 45 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 35678999999999999998887 66665444
No 107
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.29 E-value=7.4 Score=31.95 Aligned_cols=37 Identities=16% Similarity=0.461 Sum_probs=25.2
Q ss_pred CCCCCCCccccccccccCC-CceEEccCCCcCCHHHHH
Q 046606 29 SPAIRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIE 65 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~ 65 (246)
....++..|.+|...|.-- ...--..||..||..|-.
T Consensus 159 p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 159 PDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cccccCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 3344567999999888641 113445799999998853
No 108
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=49.73 E-value=17 Score=27.83 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=32.4
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHhc-----------CCCCCCCCCc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN-----------LKRNCPLCNA 79 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~-----------~~~~CPlCr~ 79 (246)
+..++.|.+|.+-=. +..-..|-..||..||..-+. ..-.||.|..
T Consensus 60 Dg~~d~C~vC~~GG~---LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSS---EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCc---EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 445788999998532 244557888999999996432 2346999964
No 109
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=49.35 E-value=4.6 Score=28.79 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=29.3
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhc---CCCCCCCCCc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSN---LKRNCPLCNA 79 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~---~~~~CPlCr~ 79 (246)
+...| ||.....+.....-..|.-.||..|+..-.. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 44567 8987665543333446888899999865222 1346999964
No 110
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=48.06 E-value=9.6 Score=24.97 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCCCCccccccccccCCC-ceEEc-cCCCcCCHHHHH
Q 046606 31 AIRGQKCPICLDNLTDRR-TAVLK-VCTHAYCLECIE 65 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~-~~~~~-~C~H~Fc~~Ci~ 65 (246)
+++...|++|.....+.. ...-. .|.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 356778999999875532 22233 677789999983
No 111
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.99 E-value=1.7 Score=28.31 Aligned_cols=37 Identities=19% Similarity=0.677 Sum_probs=22.1
Q ss_pred CCccccccccccCCC--ceEEc-c--CCCcCCHHHHHHHhcC
Q 046606 34 GQKCPICLDNLTDRR--TAVLK-V--CTHAYCLECIEKWSNL 70 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~--~~~~~-~--C~H~Fc~~Ci~~w~~~ 70 (246)
--.||-|...++... .-++- . |++.||..|...|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 346898888876531 11111 2 7777777777766543
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=47.98 E-value=4.5 Score=32.36 Aligned_cols=44 Identities=18% Similarity=0.467 Sum_probs=29.8
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcC----CCCCCCCCcc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL----KRNCPLCNAP 80 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~----~~~CPlCr~~ 80 (246)
+..|.+|.+.-. ...-..|...||..|+..-+.. .-.||.|...
T Consensus 2 ~~~C~~C~~~g~---ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSS---CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCc---eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 567999986522 2444578889999999753332 2359999764
No 113
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=47.46 E-value=15 Score=24.73 Aligned_cols=51 Identities=18% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCCcccccccccc-CCCceEEccCCCcCCHHHHHHH---h--cCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLT-DRRTAVLKVCTHAYCLECIEKW---S--NLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~-~~~~~~~~~C~H~Fc~~Ci~~w---~--~~~~~CPlCr~~~~~ 83 (246)
.+...| ||..... +.....-..|..-||..|+.-- . .....||.|......
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 456667 8988764 2222233468888999998531 1 134679999876543
No 114
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=46.87 E-value=8.7 Score=28.51 Aligned_cols=41 Identities=15% Similarity=0.358 Sum_probs=29.0
Q ss_pred ccccCCCCCCCCchhhhhhhhhhhhhhhhhcCCCCc--EEEEe
Q 046606 185 LGQNASGNNFVKGRLVQRIDPWIRRELQALLGGPRS--IHYCS 225 (246)
Q Consensus 185 ~~~~i~~~~~~~p~~~~Rl~~Wl~REL~v~~~~~~~--~~~~~ 225 (246)
+.-.+-|++..+.-+-.++.|||.+-+.-++|..+. |.|+.
T Consensus 29 f~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~ 71 (119)
T 3v53_A 29 FAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVC 71 (119)
T ss_dssp HHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHH
T ss_pred hcccCChhhhhHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 333578988766555679999999999999998877 54444
No 115
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=45.95 E-value=4.6 Score=32.29 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=33.5
Q ss_pred CCccccccccccCCC----ceEEccCCCcCCHHHHHHH------hc-----CCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRR----TAVLKVCTHAYCLECIEKW------SN-----LKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~----~~~~~~C~H~Fc~~Ci~~w------~~-----~~~~CPlCr~~~~~ 83 (246)
...||||.....+.+ ...-..|..-||..|+.-- +. ....||.|+..-+.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 356999998876642 2233468888999998421 11 15789999876553
No 116
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.85 E-value=9.3 Score=26.16 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=30.7
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
.....|..|...+.. .++..-+..||..| ..|-.|+..+...
T Consensus 23 ~~~~~C~~C~~~I~~---~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 23 KRTPMCAHCNQVIRG---PFLVALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp TCCCBBSSSCCBCCS---CEEEETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCCCccCCCEecc---eEEEECCccccccC--------CccCCCCCCCCCC
Confidence 356779999999876 34445666777777 5788999888653
No 117
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=45.55 E-value=19 Score=27.04 Aligned_cols=46 Identities=20% Similarity=0.526 Sum_probs=30.8
Q ss_pred CCCCCccccccccccCCCceEEccCCCcCCHHHHHHHh------c-----CCCCCCCCCc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWS------N-----LKRNCPLCNA 79 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~------~-----~~~~CPlCr~ 79 (246)
+..++.|.||.+-=. +..-..|-..||..||..-+ + ..=.|+.|..
T Consensus 54 Dg~~~~C~vC~dGG~---LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN---LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSE---EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCe---eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 335677999997522 23445788899999998631 1 2246999943
No 118
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=45.12 E-value=12 Score=24.71 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=25.5
Q ss_pred CCCCCccccccccccCCCceEEccC-CCcCCHHHHHHHh
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLKVC-THAYCLECIEKWS 68 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~~C-~H~Fc~~Ci~~w~ 68 (246)
.++..-|.||.+.-. ..-.-| +-.||..|+.+..
T Consensus 5 ~ee~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT----LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSCCC----EEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCCCe----EEecCCCCceehHHHHHHHc
Confidence 345677999999832 466778 6689999988754
No 119
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=44.08 E-value=11 Score=26.23 Aligned_cols=34 Identities=21% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCCccccccccccCC-CceEEccCCCcCCHHHHHH
Q 046606 33 RGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEK 66 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~ 66 (246)
+...|.+|...|.-- ....-..||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 456799999987631 1134457999999999643
No 120
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.02 E-value=10 Score=30.89 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=23.0
Q ss_pred CCCCccccccccccCC-CceEEccCCCcCCHHHH
Q 046606 32 IRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECI 64 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci 64 (246)
.++..|.+|...|.-- ...---.||+.||..|.
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs 192 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 192 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHh
Confidence 3568999999887531 11334479999998884
No 121
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.75 E-value=13 Score=25.51 Aligned_cols=35 Identities=17% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCCCCCccccccccccCC-CceEEccCCCcCCHHHH
Q 046606 30 PAIRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECI 64 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci 64 (246)
++.+...|.+|...|.-- ...--..||..||..|.
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 344556899999988541 11233479999998883
No 122
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=42.78 E-value=2.9 Score=28.98 Aligned_cols=35 Identities=20% Similarity=0.595 Sum_probs=20.8
Q ss_pred CCC-ccccccccccCC--Cc-eEEccCCCcCCHHHHHHH
Q 046606 33 RGQ-KCPICLDNLTDR--RT-AVLKVCTHAYCLECIEKW 67 (246)
Q Consensus 33 ~~~-~C~ICl~~~~~~--~~-~~~~~C~H~Fc~~Ci~~w 67 (246)
+.. -||-|-..+... .. ..-..|++.||+.|-..|
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 344 388776644321 11 222359999999888777
No 123
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=42.26 E-value=6.7 Score=25.42 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=30.8
Q ss_pred CCCCCccccccccccC--CCceEEccCCCcCCHHHHHHHh-------cCCCCCCCCCc
Q 046606 31 AIRGQKCPICLDNLTD--RRTAVLKVCTHAYCLECIEKWS-------NLKRNCPLCNA 79 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~--~~~~~~~~C~H~Fc~~Ci~~w~-------~~~~~CPlCr~ 79 (246)
..++..|.||...... ..+..-..|...||..|+..-+ ...-.|+.|..
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 3467889999986432 2233344788889999986522 12235777754
No 124
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=42.18 E-value=18 Score=24.06 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=31.8
Q ss_pred CCCCCCCccccccccc--cCCCceEEccCCCcCCHHHHHHHhc--CCCCCCCCCc
Q 046606 29 SPAIRGQKCPICLDNL--TDRRTAVLKVCTHAYCLECIEKWSN--LKRNCPLCNA 79 (246)
Q Consensus 29 ~~~~~~~~C~ICl~~~--~~~~~~~~~~C~H~Fc~~Ci~~w~~--~~~~CPlCr~ 79 (246)
+...++..|.||.+.- .+.....-..|.-.||..|+..-.. ..-.||.|..
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4456788999998763 2222334457888999999864221 1234777743
No 125
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.86 E-value=15 Score=26.67 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=34.2
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
+-+.|..|...|.+........=+..||..|..+.+..+..|-.|...+..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 457788888888521002334456678999988876655579999887764
No 126
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.08 E-value=18 Score=24.00 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
.....|.-|...+.+ ..+..-+..||..| ..|-.|+..+...
T Consensus 13 ~~~~~C~~C~~~I~~---~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 13 LGKYICQKCHAIIDE---QPLIFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCBCTTTCCBCCS---CCCCCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred cCCCCCccCCCEecc---eEEEECcceeCCCC--------CEeCCCCCccCCC
Confidence 345679999998885 33444566677666 5688898888754
No 127
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.84 E-value=16 Score=24.17 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=29.0
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
....|.-|...+.. .++..-+..||..| ..|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG---VFVKLRDRHRHPEC--------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS---SCEECSSCEECTTT--------TSCSSSCCCHHH
T ss_pred CCCccccCCCCccC---cEEEECcceeCcCc--------CeeCCCCCCCCC
Confidence 45679999998886 24445566777777 568889888754
No 128
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.65 E-value=24 Score=23.91 Aligned_cols=40 Identities=28% Similarity=0.466 Sum_probs=29.6
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
....|.-|...+.. .++..-+..||..| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG---AVVKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS---CCEESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc---cEEEECCceECccC--------CEecCCCCCCCC
Confidence 45679999998886 33445666777777 578899888865
No 129
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=38.36 E-value=18 Score=25.02 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=32.2
Q ss_pred CCCCCcccccccccc-CC-CceEEccCCCcCCHHHHHHHhc--CCCCCCCCCcccc
Q 046606 31 AIRGQKCPICLDNLT-DR-RTAVLKVCTHAYCLECIEKWSN--LKRNCPLCNAPFR 82 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~-~~-~~~~~~~C~H~Fc~~Ci~~w~~--~~~~CPlCr~~~~ 82 (246)
.+++..|.||.+.-. +. .+..-..|.-.||..|+..-.. ..-.||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 356789999997641 11 1233346888899999975321 1234888865443
No 130
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.33 E-value=11 Score=27.91 Aligned_cols=50 Identities=24% Similarity=0.575 Sum_probs=28.7
Q ss_pred CCCCCCccccccccccCC-CceEEccCCCcCCHHHHHHHhcCCCCCCCCCc
Q 046606 30 PAIRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSNLKRNCPLCNA 79 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~ 79 (246)
++.+...|..|...|.-- ...--..||..||..|..........|-.|-.
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 445567899999988641 11344589999999996544333455666643
No 131
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.89 E-value=10 Score=24.34 Aligned_cols=49 Identities=14% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCCCCccccccccccCC-CceEEccCCCcCCHHHHHHHhc-----CCCCCCCCCc
Q 046606 31 AIRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKWSN-----LKRNCPLCNA 79 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w~~-----~~~~CPlCr~ 79 (246)
.+++..|+||.....+. ....-..|..-||..|+.--.. ....||.|..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 35678899999876432 1222336777799999854211 2356888854
No 132
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.57 E-value=7.2 Score=26.52 Aligned_cols=45 Identities=20% Similarity=0.478 Sum_probs=28.3
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcC-----CCCCCCCCc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-----KRNCPLCNA 79 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-----~~~CPlCr~ 79 (246)
..|.||...-....+..-..|...||..|+..-+.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378899865333333444578889999998753222 224888854
No 133
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=37.28 E-value=14 Score=35.30 Aligned_cols=50 Identities=20% Similarity=0.575 Sum_probs=36.6
Q ss_pred CCCCccccccccccCC-------CceEEccCCCcC--------------------CHHHHHHHhcC--------CCCCCC
Q 046606 32 IRGQKCPICLDNLTDR-------RTAVLKVCTHAY--------------------CLECIEKWSNL--------KRNCPL 76 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-------~~~~~~~C~H~F--------------------c~~Ci~~w~~~--------~~~CPl 76 (246)
.+-..|+-|+.++.++ -..-.+.||..| |..|..++... ...||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 3677899999998876 123345677666 99999998653 246999
Q ss_pred CCccc
Q 046606 77 CNAPF 81 (246)
Q Consensus 77 Cr~~~ 81 (246)
|.-.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 98766
No 134
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.37 E-value=18 Score=23.16 Aligned_cols=41 Identities=24% Similarity=0.570 Sum_probs=26.3
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
....|..|...+.+. ++..-+..||..| ..|-.|+..+...
T Consensus 4 ~~~~C~~C~~~I~~~---~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR---VIKAMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCSC---CEEETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CCCcCccCCCEecce---EEEECcccccccC--------CEeCCCCCcCCCC
Confidence 345788888887752 3334455566665 4677888877654
No 135
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.88 E-value=29 Score=25.20 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=36.7
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.+-+.|..|...|.+........=+..||..|..+.+.....|..|...+..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 3678899999888531113444556779999988866544589999988754
No 136
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.82 E-value=19 Score=26.40 Aligned_cols=40 Identities=23% Similarity=0.523 Sum_probs=29.1
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
....|.-|-..+.+. .++..-+..||..| ..|-.|+..+.
T Consensus 60 ~~~~C~~C~~~I~~~--~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADR--FLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSS--SEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCc--EEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 456899999998874 33445566677766 56889998885
No 137
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.30 E-value=12 Score=28.28 Aligned_cols=34 Identities=21% Similarity=0.479 Sum_probs=24.0
Q ss_pred CCCCcccccccccc--CCCceEEccCCCcCCHHHHH
Q 046606 32 IRGQKCPICLDNLT--DRRTAVLKVCTHAYCLECIE 65 (246)
Q Consensus 32 ~~~~~C~ICl~~~~--~~~~~~~~~C~H~Fc~~Ci~ 65 (246)
..+..|.+|...|. ...-..-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56788999999883 11124555788988888854
No 138
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=35.11 E-value=15 Score=35.71 Aligned_cols=51 Identities=20% Similarity=0.435 Sum_probs=36.3
Q ss_pred CCCCccccccccccCC-------CceEEccCCCcC--------------------CHHHHHHHhcC--------CCCCCC
Q 046606 32 IRGQKCPICLDNLTDR-------RTAVLKVCTHAY--------------------CLECIEKWSNL--------KRNCPL 76 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-------~~~~~~~C~H~F--------------------c~~Ci~~w~~~--------~~~CPl 76 (246)
.+-..|+-|+.++.++ -..-.+.||..| |..|..++... ...||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 3567899999998876 123345677554 99999998653 245999
Q ss_pred CCcccc
Q 046606 77 CNAPFR 82 (246)
Q Consensus 77 Cr~~~~ 82 (246)
|.-.+.
T Consensus 189 CGP~l~ 194 (761)
T 3vth_A 189 CGPSLS 194 (761)
T ss_dssp TSCCEE
T ss_pred cCCeeE
Confidence 987653
No 139
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=34.07 E-value=5.3 Score=27.23 Aligned_cols=44 Identities=18% Similarity=0.498 Sum_probs=25.6
Q ss_pred ccccccccccCCCceEEccCCCcCCHHHHHHHhcCC-----CCCCCCCc
Q 046606 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK-----RNCPLCNA 79 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-----~~CPlCr~ 79 (246)
.|.||...-....+..-..|...||..|+..-+... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666543332223334788889999987643321 35888864
No 140
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=34.01 E-value=5.3 Score=34.63 Aligned_cols=46 Identities=17% Similarity=0.496 Sum_probs=34.4
Q ss_pred CCCCccccccccccCCCceEEc----cCC--CcCCHHHHHHHhcCCCCCCCCCcc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLK----VCT--HAYCLECIEKWSNLKRNCPLCNAP 80 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~----~C~--H~Fc~~Ci~~w~~~~~~CPlCr~~ 80 (246)
.....||+|-..-.- .++. .=| +.+|..|-.+|.-...+||.|...
T Consensus 180 ~~~~~CPvCGs~P~~---s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMA---GMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEE---EEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCce---eEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 467899999987654 3332 233 357889989998888999999876
No 141
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=33.71 E-value=9.7 Score=31.47 Aligned_cols=45 Identities=18% Similarity=0.490 Sum_probs=25.6
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcC-----CCCCCCCCc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-----KRNCPLCNA 79 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-----~~~CPlCr~ 79 (246)
..|.+|...-.......-..|...||..|+..=+.. .=.||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368888764322223444578889999999853322 224999964
No 142
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=33.44 E-value=30 Score=24.97 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=35.1
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
+-+.|..|...|... .....=+..||..|....+ ...|..|+..+..
T Consensus 29 ~CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGE--IYVMVNDKPVCKPCYVKNH--AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTS--EEEEETTEEEEHHHHHHHS--CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcC--EEEeECCEEechHHhCcCc--CccCcccCCcCCc
Confidence 568899999988763 4555667789999986543 4679999988764
No 143
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=32.64 E-value=16 Score=19.31 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=9.4
Q ss_pred hhhhhhhhhhhh
Q 046606 203 IDPWIRRELQAL 214 (246)
Q Consensus 203 l~~Wl~REL~v~ 214 (246)
-..||.+||+-+
T Consensus 6 PE~wiAqELRRI 17 (27)
T 3kj0_B 6 PEIWYAQELRRI 17 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 357999999865
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.05 E-value=12 Score=27.20 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=17.9
Q ss_pred eEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 50 AVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 50 ~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
+.-..||+.|+ .-......||.|+...-
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 45567999982 11233467999987643
No 145
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.02 E-value=24 Score=23.00 Aligned_cols=38 Identities=26% Similarity=0.553 Sum_probs=26.6
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
...|+-|...+.. .++..-+..||.+| ..|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~---~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG---RVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS---CCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecC---eeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 3568888888876 33445566677776 56888888775
No 146
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=31.98 E-value=34 Score=22.95 Aligned_cols=46 Identities=17% Similarity=0.421 Sum_probs=29.3
Q ss_pred hhhhhcccCCCCCCCccccccccccCCCceEEccCCCcCCHHHHHH
Q 046606 21 EKFVSRVISPAIRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEK 66 (246)
Q Consensus 21 ~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~ 66 (246)
++|..........+..|.+|.+.-..+-+..-+.|.-.||..|+..
T Consensus 17 E~~~~~~~~~~~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 17 ERAFDANTMTSAEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCCCCCCCSSSCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred HHHhhcCCcCCCCCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 4444333333345788999986431111355678999999999986
No 147
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=31.63 E-value=15 Score=26.80 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=23.1
Q ss_pred hhhhhhhhhhhhhhhcCCCCc--EEEEeccee
Q 046606 200 VQRIDPWIRRELQALLGGPRS--IHYCSCGLY 229 (246)
Q Consensus 200 ~~Rl~~Wl~REL~v~~~~~~~--~~~~~~~~~ 229 (246)
+..+.|||...++-++|..|. |.|++..|.
T Consensus 22 l~~ikpWI~kki~e~LG~EDdvlid~i~~~L~ 53 (111)
T 1mp1_A 22 LEVIKPWITKRVTEILGFEDDVVIEFIFNQLE 53 (111)
T ss_dssp SGGGHHHHHHHHHHHHSSCCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHhh
Confidence 357899999999999997665 666665543
No 148
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=31.38 E-value=18 Score=25.88 Aligned_cols=13 Identities=23% Similarity=1.048 Sum_probs=11.1
Q ss_pred cCCHHHHHHHhcC
Q 046606 58 AYCLECIEKWSNL 70 (246)
Q Consensus 58 ~Fc~~Ci~~w~~~ 70 (246)
.||..|+..|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999863
No 149
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=31.32 E-value=18 Score=18.98 Aligned_cols=11 Identities=36% Similarity=0.924 Sum_probs=9.2
Q ss_pred hhhhhhhhhhh
Q 046606 204 DPWIRRELQAL 214 (246)
Q Consensus 204 ~~Wl~REL~v~ 214 (246)
..||.+||+-+
T Consensus 5 E~~iAqELRRI 15 (26)
T 2wh6_B 5 EIWIAQELRRI 15 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57999999875
No 150
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=31.23 E-value=18 Score=25.81 Aligned_cols=12 Identities=33% Similarity=1.176 Sum_probs=10.7
Q ss_pred cCCHHHHHHHhc
Q 046606 58 AYCLECIEKWSN 69 (246)
Q Consensus 58 ~Fc~~Ci~~w~~ 69 (246)
.||..|+..|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 151
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.85 E-value=36 Score=21.72 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=27.4
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...|..|...+.... .++..-+..||..| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGS-RKLEYGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSS-CEECSTTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCc-cEEEECccccCccc--------CeECCCCCcCCC
Confidence 457888988887421 34445566677666 568888887764
No 152
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=30.32 E-value=20 Score=28.19 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=35.1
Q ss_pred CCCCccccccccccC-CCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTD-RRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~-~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.+-+.|..|...|.. .. .....=+..||..|..+.+.....|..|.+.+..
T Consensus 30 ~~CF~C~~C~~~L~~~g~-~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGT-SSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCS-EEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCc-eEEEeCCccccccccccccccCCccccCCCcccc
Confidence 357889999888764 10 3444456779999987765543469999888763
No 153
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.00 E-value=18 Score=25.06 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCCCccccccccccCC-CceEEccCCCcCCHHHHH
Q 046606 32 IRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIE 65 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~ 65 (246)
.+...|.+|...|.-- ...--..||..||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 3456799999988641 112334799999998854
No 154
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.75 E-value=28 Score=21.89 Aligned_cols=39 Identities=21% Similarity=0.465 Sum_probs=26.8
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...|+.|...+.+ .++..-+..||..| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEG---RVVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCS---CEECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecc---eEEEECccccccCc--------CEECCCCCCCCC
Confidence 4568888888875 34455566666666 568888887764
No 155
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=29.24 E-value=7.6 Score=24.90 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCCCCCccccccccccCCCceEEcc--CC-CcCCHHHHHHHhc--CCCCCCCCCc
Q 046606 30 PAIRGQKCPICLDNLTDRRTAVLKV--CT-HAYCLECIEKWSN--LKRNCPLCNA 79 (246)
Q Consensus 30 ~~~~~~~C~ICl~~~~~~~~~~~~~--C~-H~Fc~~Ci~~w~~--~~~~CPlCr~ 79 (246)
+.++...| ||.+.... ....-.. |. ..||..|+.--.. ..-.||.|..
T Consensus 5 d~~e~~yC-~C~~~~~g-~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVSYG-EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ---CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCCCcEE-ECCCCCCC-CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 34466777 99886432 1122224 65 5799999862111 1235887753
No 156
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.21 E-value=33 Score=23.60 Aligned_cols=46 Identities=17% Similarity=0.444 Sum_probs=27.3
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
+-+.|..|...|... .....=+..||..|..+ .....|..|...+.
T Consensus 32 ~CF~C~~C~~~L~~~--~~~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANE--TFVAKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSS--CCEEETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcC--eeECcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 456777777777543 23334455677777532 22456777777665
No 157
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.12 E-value=32 Score=22.89 Aligned_cols=42 Identities=14% Similarity=0.444 Sum_probs=27.8
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.....|.-|-..+...+ .+..-+..||..| ..|-.|+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQ--SLLALDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp SSCSCCTTTCCCCSSSC--CEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCCcCcCCeeCCCe--EEEECCccccccc--------CCcCcCCCCcCC
Confidence 34677999999887532 2233455566666 568888887764
No 158
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.00 E-value=37 Score=21.54 Aligned_cols=39 Identities=18% Similarity=0.454 Sum_probs=25.1
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...|..|...+.. ..+..-+..||..| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITT---GGVTYREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCS---SEEESSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCCcccCCeecc---ceEEECccccCCCC--------CccCCCCCcCCc
Confidence 3568888888775 23444555666666 567788777653
No 159
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=28.19 E-value=10 Score=25.15 Aligned_cols=44 Identities=18% Similarity=0.520 Sum_probs=25.8
Q ss_pred ccccccccccCCCceEEccCCCcCCHHHHHHHhcC-----CCCCCCCCc
Q 046606 36 KCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNL-----KRNCPLCNA 79 (246)
Q Consensus 36 ~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-----~~~CPlCr~ 79 (246)
.|.||...-....+..-..|...||..|+..-+.. .=.||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45677754322222333468889999998753222 224888864
No 160
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=28.15 E-value=43 Score=29.81 Aligned_cols=45 Identities=29% Similarity=0.662 Sum_probs=30.2
Q ss_pred CCCccccccccccCCCceEEc--cCCCcCCHHHHHHHhcC----------CCCCCCCCcc
Q 046606 33 RGQKCPICLDNLTDRRTAVLK--VCTHAYCLECIEKWSNL----------KRNCPLCNAP 80 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~--~C~H~Fc~~Ci~~w~~~----------~~~CPlCr~~ 80 (246)
.+..|-+|-+--. +..-. .|...||..||...+.. .=.|=+|.-.
T Consensus 92 ~~~yCr~C~~Gg~---l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGET---LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSS---CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCe---EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3566777776432 24444 78899999999987743 2358888644
No 161
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.54 E-value=23 Score=27.29 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=23.9
Q ss_pred CCCccccccccccC--CCceEEccCCCcCCHHHH
Q 046606 33 RGQKCPICLDNLTD--RRTAVLKVCTHAYCLECI 64 (246)
Q Consensus 33 ~~~~C~ICl~~~~~--~~~~~~~~C~H~Fc~~Ci 64 (246)
.+..|.+|...|.- ..-.+-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 57889999998532 123556689999999986
No 162
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=27.44 E-value=23 Score=25.58 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=27.7
Q ss_pred CCCCCccccccccccCCCceEEc--cCCCcCCHHHHHHHhcCC----CCCCCCCccc
Q 046606 31 AIRGQKCPICLDNLTDRRTAVLK--VCTHAYCLECIEKWSNLK----RNCPLCNAPF 81 (246)
Q Consensus 31 ~~~~~~C~ICl~~~~~~~~~~~~--~C~H~Fc~~Ci~~w~~~~----~~CPlCr~~~ 81 (246)
...+..|.+|.+. +++..-. .|-..||..|+. +... -.||.|.-..
T Consensus 12 ~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 3567889999853 2112222 477789999986 3322 2377665443
No 163
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.61 E-value=30 Score=22.77 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=25.8
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFR 82 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~ 82 (246)
..|..|...+.+ .++..-+..||..| ..|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTG---PFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCS---CCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCc---eEEEECCceecccc--------CCccCCCCccC
Confidence 468899888875 33444566677666 56888888875
No 164
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.56 E-value=26 Score=22.86 Aligned_cols=40 Identities=18% Similarity=0.430 Sum_probs=27.2
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...|..|...+...+ .+..-+..||..| ..|..|+..+..
T Consensus 9 ~~~C~~C~~~I~~~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE--KVSSLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTT--EEEETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCe--EEEECCeEeeCCC--------CCCCCCCCccCC
Confidence 467999999887432 3334455666666 568888888764
No 165
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.21 E-value=42 Score=22.34 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=27.6
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccCc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSWF 85 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~~ 85 (246)
....|..|...+...+ .+..-+..||..| ..|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e--~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLE--RLCVNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTT--BCCBTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccce--EEEECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 4567999999886432 2223455566666 56888888776543
No 166
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.42 E-value=46 Score=21.99 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCCccccccccccCCCceEEccCCCcCCHHHHHHH---------hcCCCCCCCCCccc
Q 046606 33 RGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKW---------SNLKRNCPLCNAPF 81 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w---------~~~~~~CPlCr~~~ 81 (246)
....| ||...........-..|..-||..|+.-- ......||.|+...
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 45667 89887654322233468888999998421 12467799996543
No 167
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=25.30 E-value=39 Score=26.23 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=24.0
Q ss_pred CCCccccccccccCCCceEEc--cCCCcCCHHHHHHHhcC
Q 046606 33 RGQKCPICLDNLTDRRTAVLK--VCTHAYCLECIEKWSNL 70 (246)
Q Consensus 33 ~~~~C~ICl~~~~~~~~~~~~--~C~H~Fc~~Ci~~w~~~ 70 (246)
.+..|.||-+--. +..-. .|...||..||..++..
T Consensus 78 ~~~yC~wC~~Gg~---l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGGRE---VLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCCSE---EEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCCCe---EEeeCCCCCCCchhHHHHHHhcCH
Confidence 4677899887421 12223 58889999999887654
No 168
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=24.82 E-value=9.8 Score=24.39 Aligned_cols=44 Identities=18% Similarity=0.449 Sum_probs=24.5
Q ss_pred CCCCccccccccccCCCceEEcc--CC-CcCCHHHHHHHhcC----CCCCCCCCc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKV--CT-HAYCLECIEKWSNL----KRNCPLCNA 79 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~--C~-H~Fc~~Ci~~w~~~----~~~CPlCr~ 79 (246)
++...| ||...-.. ....-.. |. ..||..|+. +.. .-.||.|..
T Consensus 8 ~e~~~C-~C~~~~~g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCC-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 456667 89886432 1111124 54 569999986 222 234887743
No 169
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.46 E-value=36 Score=22.03 Aligned_cols=43 Identities=16% Similarity=0.461 Sum_probs=27.2
Q ss_pred CCCCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
.....|+-|...+...+ .++..-+..||..| ..|-.|+..+..
T Consensus 9 ~~~~~C~~C~~~I~~~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAE-KIVNSNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTT-TCEEETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCc-eEEEeCccEecccc--------CeECCCCCCCCC
Confidence 34677999999886321 22233455566665 568888887764
No 170
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.14 E-value=29 Score=22.92 Aligned_cols=40 Identities=25% Similarity=0.601 Sum_probs=26.2
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
...|+-|...+.+ .++..-+..||..| ..|..|+..+...
T Consensus 15 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD---RILRAMGKAYHPGC--------FTCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS---CCEEETTEEECTTT--------CBCSSSCCBCTTS
T ss_pred CCccccCCCeecc---eeEEECCccccHHh--------cCcccCCCccCCC
Confidence 4568888888775 23334455666666 5688888877643
No 171
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.88 E-value=42 Score=22.02 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=27.8
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
...|..|...+...+ .++..=+..||..| ..|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD-QNVEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSS-CEEECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCc-eEEEECcccccccc--------CchhhCCCccCCC
Confidence 357999999887321 23444466677666 5688898887653
No 172
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.75 E-value=29 Score=22.87 Aligned_cols=38 Identities=24% Similarity=0.632 Sum_probs=26.8
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..|..|...+.. .++..-+..||..| ..|-.|+..+..
T Consensus 16 ~~C~~C~~~I~~---~~v~a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG---EVVSALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS---CCEEETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEecc---ceEEECCceeCccC--------CccccCCCCCCC
Confidence 479999998875 23344566677666 568889888764
No 173
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.58 E-value=29 Score=22.07 Aligned_cols=39 Identities=15% Similarity=0.430 Sum_probs=22.9
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...|.-|...+... .+..-+..||..| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~---~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITSG---GITYQDQPWHADC--------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCTT---CEEETTEEECTTT--------TBCTTTCCBCTT
T ss_pred cCCCcccCCEeCcc---eEEECccccccCc--------CEECCCCCCCCC
Confidence 45688888777652 2223344555555 457777777653
No 174
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=22.95 E-value=3.8 Score=30.00 Aligned_cols=47 Identities=19% Similarity=0.455 Sum_probs=28.5
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCC----CCCCCCCccc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLK----RNCPLCNAPF 81 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CPlCr~~~ 81 (246)
..|.||...-.+..+..-..|...||..|+..-+... -.||.|...+
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 3577887754443334445788889999987533221 2377775544
No 175
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=22.91 E-value=27 Score=25.00 Aligned_cols=48 Identities=19% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCccccccccccCC-CceEEc-cCCCcCCHHHHHHH------h----cCCCCCCCCCccc
Q 046606 34 GQKCPICLDNLTDR-RTAVLK-VCTHAYCLECIEKW------S----NLKRNCPLCNAPF 81 (246)
Q Consensus 34 ~~~C~ICl~~~~~~-~~~~~~-~C~H~Fc~~Ci~~w------~----~~~~~CPlCr~~~ 81 (246)
...|+||.....+. ....-. .|..-||..|+.-- + .....||.|....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46799999986442 222222 57777999998421 0 0245699997643
No 176
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.87 E-value=53 Score=21.89 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=29.9
Q ss_pred CCCCccccccccccCCCceEEc--cCCCcCCHHHHHHHhc---------CCCCCCCCCcc
Q 046606 32 IRGQKCPICLDNLTDRRTAVLK--VCTHAYCLECIEKWSN---------LKRNCPLCNAP 80 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~~~~~~~--~C~H~Fc~~Ci~~w~~---------~~~~CPlCr~~ 80 (246)
++...| ||.....+.....-. .|..-||..|+.--.. ....||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 456778 899875443222223 6888899999853211 24568888654
No 177
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.84 E-value=75 Score=20.10 Aligned_cols=41 Identities=20% Similarity=0.477 Sum_probs=21.4
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...|..|...+...+ .++..=+..||..| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x61_A 5 SSGCGGCGEDVVGDG-AGVVALDRVFHVGC--------FVCSTCRAQLRG 45 (72)
T ss_dssp CCCCSSSCSCCCSSS-CCEECSSSEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCccCCCccCCCc-eEEEECCCeEcccC--------CcccccCCcCCc
Confidence 345777776665311 12223344555555 456667766643
No 178
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.73 E-value=27 Score=18.97 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=5.0
Q ss_pred CCCCCCcccc
Q 046606 73 NCPLCNAPFR 82 (246)
Q Consensus 73 ~CPlCr~~~~ 82 (246)
.||+|+....
T Consensus 5 ~CpvCk~q~P 14 (28)
T 2jvx_A 5 CCPKCQYQAP 14 (28)
T ss_dssp ECTTSSCEES
T ss_pred cCccccccCc
Confidence 3555555444
No 179
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=22.50 E-value=49 Score=21.30 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=12.1
Q ss_pred CCCCCcccccccc-ccC
Q 046606 31 AIRGQKCPICLDN-LTD 46 (246)
Q Consensus 31 ~~~~~~C~ICl~~-~~~ 46 (246)
..+...|.||+.. |.+
T Consensus 6 ~~d~~~C~iC~KTKFAD 22 (62)
T 2a20_A 6 KGDAPTCGICHKTKFAD 22 (62)
T ss_dssp SSCCCCCSSSSCSCCCS
T ss_pred cCCcchhhhhccceecc
Confidence 4578899999985 555
No 180
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=22.21 E-value=20 Score=24.40 Aligned_cols=35 Identities=6% Similarity=-0.127 Sum_probs=1.2
Q ss_pred CCCCCcccccCcccccCCchhhhhhhhcCCCCCCc
Q 046606 74 CPLCNAPFRSWFYRINLSSSDFLQQQLQPLIKDKT 108 (246)
Q Consensus 74 CPlCr~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 108 (246)
||+|.+.+.............+....+|+......
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~ 35 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMT 35 (79)
T ss_dssp --------------------------------CCE
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCE
Confidence 79999888765433333444555566776554433
No 181
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.87 E-value=19 Score=31.93 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=0.0
Q ss_pred CCCCccccccccccCC-CceEEccCCCcCCHHHHHHH
Q 046606 32 IRGQKCPICLDNLTDR-RTAVLKVCTHAYCLECIEKW 67 (246)
Q Consensus 32 ~~~~~C~ICl~~~~~~-~~~~~~~C~H~Fc~~Ci~~w 67 (246)
.+...|.+|...|.-- ....-..||+.||..|-...
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp -------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCe
Confidence 3456799999987531 11233479999999998653
No 182
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=21.64 E-value=57 Score=19.85 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=25.2
Q ss_pred ccccccccccCCC-ceEEc-cCCCcCCHHHHHH----HhcCCCCCCCCC
Q 046606 36 KCPICLDNLTDRR-TAVLK-VCTHAYCLECIEK----WSNLKRNCPLCN 78 (246)
Q Consensus 36 ~C~ICl~~~~~~~-~~~~~-~C~H~Fc~~Ci~~----w~~~~~~CPlCr 78 (246)
.|.+|.....+.. ...-. .|..-||..|+.- .......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778887765431 11223 5776799999743 113456788884
No 183
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.35 E-value=5.2 Score=27.67 Aligned_cols=41 Identities=29% Similarity=0.732 Sum_probs=22.8
Q ss_pred CccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 35 QKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 35 ~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
..||.|...+... .. +.+|..|-..+.. ..-||-|.+++..
T Consensus 3 ~~CP~C~~~l~~~--~~-----~~~C~~C~~~~~~-~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERN--GD-----TAHCETCAKDFSL-QALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEEC--SS-----EEECTTTCCEEEE-EEECSSSCSCCCE
T ss_pred CCCCCCCCccccC--CC-----ceECccccccCCC-cccCcchhhHHHH
Confidence 5799998877542 11 2235555332222 2358888877754
No 184
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.19 E-value=39 Score=21.53 Aligned_cols=42 Identities=14% Similarity=0.379 Sum_probs=26.3
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCcccccC
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRSW 84 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~~ 84 (246)
...|..|...+...+ .++..-+..||..| ..|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGT-RKMEYKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSS-CEEEETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCc-eEEEECcCeecccC--------CcccccCCccCCC
Confidence 346888988887521 23333455566655 5688888877653
No 185
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.61 E-value=4.1 Score=29.18 Aligned_cols=42 Identities=33% Similarity=0.697 Sum_probs=25.3
Q ss_pred CCccccccccccCCCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTDRRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
+..||+|...+.-. =++.+|..|-.. +.....||-|.+++..
T Consensus 32 ~~~CP~Cq~eL~~~-------g~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQD-------NGHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEE-------TTEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred cccCccCCCcceec-------CCEEECccccch-hhccccCcchhhHHHH
Confidence 47899999887531 122235555322 2233569999888764
No 186
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.43 E-value=74 Score=20.19 Aligned_cols=41 Identities=15% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCccccccccccC--CCceEEccCCCcCCHHHHHHHhcCCCCCCCCCccccc
Q 046606 34 GQKCPICLDNLTD--RRTAVLKVCTHAYCLECIEKWSNLKRNCPLCNAPFRS 83 (246)
Q Consensus 34 ~~~C~ICl~~~~~--~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CPlCr~~~~~ 83 (246)
...|.-|...+.. .. .++..-+..||..| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGT-KYISFEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSC-SCEECSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCc-ceEEECCcccCccc--------CEeccCCCcCCC
Confidence 4578889888874 11 23334556677666 568888887754
Done!