BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046607
         (34 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255580315|ref|XP_002530986.1| conserved hypothetical protein [Ricinus communis]
 gi|223529438|gb|EEF31398.1| conserved hypothetical protein [Ricinus communis]
          Length = 175

 Score = 41.6 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/18 (83%), Positives = 17/18 (94%)

Query: 16  GGSGFDPPRWFDEESPPE 33
           GGSGFDPPRWFDE+ PP+
Sbjct: 157 GGSGFDPPRWFDEKIPPQ 174


>gi|449448622|ref|XP_004142065.1| PREDICTED: UPF0161 protein At3g09310-like [Cucumis sativus]
 gi|449520217|ref|XP_004167130.1| PREDICTED: UPF0161 protein At3g09310-like [Cucumis sativus]
          Length = 152

 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 16/18 (88%), Positives = 16/18 (88%)

Query: 16  GGSGFDPPRWFDEESPPE 33
           GGSGFDPPRWFDEE  PE
Sbjct: 132 GGSGFDPPRWFDEERLPE 149


>gi|83816498|ref|YP_445149.1| hypothetical protein SRU_1017 [Salinibacter ruber DSM 13855]
 gi|83757892|gb|ABC46005.1| conserved hypothetical protein TIGR00278 [Salinibacter ruber DSM
           13855]
          Length = 123

 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/16 (81%), Positives = 14/16 (87%)

Query: 16  GGSGFDPPRWFDEESP 31
           GG G+DPPRWFDEE P
Sbjct: 96  GGHGYDPPRWFDEEHP 111


>gi|225440388|ref|XP_002268102.1| PREDICTED: UPF0161 protein At3g09310-like [Vitis vinifera]
          Length = 143

 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 16/18 (88%), Positives = 16/18 (88%)

Query: 16  GGSGFDPPRWFDEESPPE 33
           GGSGFDPPRWFDE  PPE
Sbjct: 125 GGSGFDPPRWFDEGPPPE 142


>gi|297740358|emb|CBI30540.3| unnamed protein product [Vitis vinifera]
          Length = 140

 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 16/18 (88%), Positives = 16/18 (88%)

Query: 16  GGSGFDPPRWFDEESPPE 33
           GGSGFDPPRWFDE  PPE
Sbjct: 122 GGSGFDPPRWFDEGPPPE 139


>gi|294507030|ref|YP_003571088.1| hypothetical protein SRM_01215 [Salinibacter ruber M8]
 gi|294343358|emb|CBH24136.1| conserved hypothetical protein [Salinibacter ruber M8]
          Length = 106

 Score = 37.7 bits (86), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/16 (81%), Positives = 14/16 (87%)

Query: 16 GGSGFDPPRWFDEESP 31
          GG G+DPPRWFDEE P
Sbjct: 79 GGHGYDPPRWFDEEHP 94


>gi|47497897|dbj|BAD20081.1| unknown protein [Oryza sativa Japonica Group]
 gi|47497921|dbj|BAD20127.1| unknown protein [Oryza sativa Japonica Group]
          Length = 130

 Score = 36.6 bits (83), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 16  GGSGFDPPRWFDEESPPE 33
           GG G+DPPRWFDEE  P+
Sbjct: 112 GGHGYDPPRWFDEEELPK 129


>gi|115445405|ref|NP_001046482.1| Os02g0260400 [Oryza sativa Japonica Group]
 gi|47497896|dbj|BAD20080.1| unknown protein [Oryza sativa Japonica Group]
 gi|47497920|dbj|BAD20126.1| unknown protein [Oryza sativa Japonica Group]
 gi|113536013|dbj|BAF08396.1| Os02g0260400 [Oryza sativa Japonica Group]
 gi|215717104|dbj|BAG95467.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 110

 Score = 35.8 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 16  GGSGFDPPRWFDEESPPE 33
           GG G+DPPRWFDEE  P+
Sbjct: 92  GGHGYDPPRWFDEEELPK 109


>gi|224140273|ref|XP_002323507.1| predicted protein [Populus trichocarpa]
 gi|222868137|gb|EEF05268.1| predicted protein [Populus trichocarpa]
          Length = 97

 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/16 (87%), Positives = 15/16 (93%)

Query: 16 GGSGFDPPRWFDEESP 31
          GGSGFDPPRWFDE+ P
Sbjct: 78 GGSGFDPPRWFDEDPP 93


>gi|357114560|ref|XP_003559068.1| PREDICTED: UPF0161 protein At3g09310-like [Brachypodium distachyon]
          Length = 130

 Score = 35.8 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 16  GGSGFDPPRWFDEESPPE 33
           GG G+DPPRWF EE  PE
Sbjct: 112 GGQGYDPPRWFGEEELPE 129


>gi|116256129|sp|Q2S3T2.2|YIDD_SALRD RecName: Full=Putative membrane protein insertion efficiency
          factor
          Length = 99

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 13/16 (81%), Positives = 14/16 (87%)

Query: 16 GGSGFDPPRWFDEESP 31
          GG G+DPPRWFDEE P
Sbjct: 72 GGHGYDPPRWFDEEHP 87


>gi|357155687|ref|XP_003577203.1| PREDICTED: UPF0161 protein At3g09310-like [Brachypodium distachyon]
          Length = 132

 Score = 35.8 bits (81), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 16  GGSGFDPPRWFDEESPPE 33
           GG G+DPPRWF EE  PE
Sbjct: 114 GGQGYDPPRWFGEEELPE 131


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.312    0.135    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 771,801,713
Number of Sequences: 23463169
Number of extensions: 16965952
Number of successful extensions: 21386
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21369
Number of HSP's gapped (non-prelim): 17
length of query: 34
length of database: 8,064,228,071
effective HSP length: 8
effective length of query: 26
effective length of database: 7,876,522,719
effective search space: 204789590694
effective search space used: 204789590694
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)