BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046607
         (34 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2S3T2|YIDD_SALRD Putative membrane protein insertion efficiency factor
          OS=Salinibacter ruber (strain DSM 13855 / M31)
          GN=SRU_1017 PE=3 SV=2
          Length = 99

 Score = 35.8 bits (81), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 13/16 (81%), Positives = 14/16 (87%)

Query: 16 GGSGFDPPRWFDEESP 31
          GG G+DPPRWFDEE P
Sbjct: 72 GGHGYDPPRWFDEEHP 87


>sp|Q9SR32|U161_ARATH UPF0161 protein At3g09310 OS=Arabidopsis thaliana GN=At3g09310 PE=2
           SV=2
          Length = 170

 Score = 33.1 bits (74), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/13 (92%), Positives = 12/13 (92%)

Query: 16  GGSGFDPPRWFDE 28
           GGSGFDPPRWF E
Sbjct: 134 GGSGFDPPRWFGE 146


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.135    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,545,092
Number of Sequences: 539616
Number of extensions: 363818
Number of successful extensions: 459
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 2
length of query: 34
length of database: 191,569,459
effective HSP length: 8
effective length of query: 26
effective length of database: 187,252,531
effective search space: 4868565806
effective search space used: 4868565806
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)