Query 046607
Match_columns 34
No_of_seqs 23 out of 25
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 02:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14388 hypothetical protein; 98.8 2.6E-09 5.7E-14 61.0 2.7 25 4-28 47-74 (82)
2 PRK14383 hypothetical protein; 98.8 4E-09 8.7E-14 60.4 2.8 27 4-30 51-80 (84)
3 TIGR00278 conserved hypothetic 98.8 3.1E-09 6.6E-14 59.6 1.9 20 4-23 43-64 (75)
4 PRK14390 hypothetical protein; 98.8 3.2E-09 7E-14 58.2 1.9 20 4-23 40-61 (63)
5 PRK14382 hypothetical protein; 98.8 3.5E-09 7.7E-14 58.4 2.0 20 4-23 47-68 (68)
6 PRK14373 hypothetical protein; 98.8 3.6E-09 7.8E-14 59.2 1.9 20 4-23 51-72 (73)
7 PRK14371 hypothetical protein; 98.8 5.5E-09 1.2E-13 59.4 2.7 19 4-22 47-67 (81)
8 PRK14384 hypothetical protein; 98.7 5.8E-09 1.3E-13 56.5 1.9 20 4-23 27-48 (56)
9 PRK14374 hypothetical protein; 98.7 7.6E-09 1.6E-13 62.5 1.9 21 4-24 55-77 (118)
10 PRK14380 hypothetical protein; 98.7 8.7E-09 1.9E-13 58.7 2.0 20 4-23 54-75 (81)
11 PRK14387 hypothetical protein; 98.7 1.2E-08 2.6E-13 58.5 2.4 19 4-22 50-70 (84)
12 PRK14385 hypothetical protein; 98.7 1.1E-08 2.5E-13 59.9 2.0 19 4-22 56-76 (96)
13 PRK14379 hypothetical protein; 98.7 2.1E-08 4.6E-13 58.5 3.0 19 4-22 47-67 (95)
14 PRK14389 hypothetical protein; 98.6 1.9E-08 4.1E-13 58.9 1.9 19 4-22 48-68 (98)
15 PRK14378 hypothetical protein; 98.6 2E-08 4.4E-13 59.5 1.9 19 4-22 58-78 (103)
16 PRK14386 hypothetical protein; 98.6 2.1E-08 4.6E-13 59.6 1.9 19 4-22 47-67 (106)
17 PRK14375 hypothetical protein; 98.6 3E-08 6.4E-13 55.3 1.9 20 4-23 41-63 (70)
18 PRK14370 hypothetical protein; 98.6 2.7E-08 5.8E-13 60.5 1.9 19 4-22 55-75 (120)
19 PRK14377 hypothetical protein; 98.6 2.9E-08 6.3E-13 58.8 1.9 19 4-22 52-72 (104)
20 PRK14372 hypothetical protein; 98.6 3E-08 6.5E-13 58.4 1.9 19 4-22 43-63 (97)
21 PRK14381 hypothetical protein; 98.6 3.3E-08 7.1E-13 58.5 1.9 19 4-22 57-77 (103)
22 PRK14391 hypothetical protein; 98.5 3.8E-08 8.3E-13 56.4 1.9 19 4-22 47-67 (84)
23 PRK00041 hypothetical protein; 98.5 4.6E-08 9.9E-13 56.4 2.0 19 4-22 54-74 (93)
24 PF01809 Haemolytic: Haemolyti 98.5 1.1E-07 2.3E-12 51.7 2.0 20 4-23 47-68 (68)
25 PRK14369 hypothetical protein; 98.4 1.4E-07 2.9E-12 57.3 1.9 19 4-22 47-67 (119)
26 PRK14376 hypothetical protein; 98.4 2.9E-07 6.3E-12 58.9 2.8 19 4-22 87-107 (176)
27 COG0759 Uncharacterized conser 98.3 2.9E-07 6.4E-12 53.7 1.9 20 4-23 52-73 (92)
28 smart00197 SAA Serum amyloid A 68.7 3.8 8.2E-05 24.7 1.6 23 11-33 80-102 (103)
29 PF00277 SAA: Serum amyloid A 61.4 7.6 0.00016 23.2 1.9 23 11-33 80-102 (103)
30 PF09734 Tau95: RNA polymerase 55.9 3.5 7.5E-05 26.2 -0.2 12 9-22 284-295 (310)
31 PF08492 SRP72: SRP72 RNA-bind 34.6 18 0.00039 19.4 0.5 8 21-28 44-51 (59)
32 PF00067 p450: Cytochrome P450 33.7 20 0.00042 21.1 0.6 12 19-30 382-393 (463)
33 KOG4330 Uncharacterized conser 32.2 20 0.00043 23.9 0.5 12 10-21 26-37 (206)
34 PF05767 Pox_A14: Poxvirus vir 31.8 53 0.0012 19.4 2.3 19 5-25 64-84 (92)
35 COG3410 Uncharacterized conser 30.9 14 0.00031 24.3 -0.2 18 5-22 77-102 (191)
36 PLN03234 cytochrome P450 83B1; 30.4 25 0.00055 22.7 0.8 13 17-29 407-419 (499)
37 PF06875 PRF: Plethodontid rec 30.3 51 0.0011 21.8 2.2 21 12-32 64-84 (214)
38 PF02467 Whib: Transcription f 29.3 22 0.00047 18.7 0.3 12 19-30 9-20 (66)
39 KOG3314 Ku70-binding protein [ 29.1 33 0.00071 22.7 1.2 14 11-24 63-76 (194)
40 PRK04024 cofactor-independent 25.9 23 0.0005 24.3 0.0 18 16-33 64-81 (412)
41 PF10477 EIF4E-T: Nucleocytopl 25.7 29 0.00062 24.9 0.5 24 5-28 29-59 (578)
42 PF08314 Sec39: Secretory path 24.2 36 0.00077 24.1 0.7 10 4-13 688-697 (715)
43 TIGR00306 apgM 2,3-bisphosphog 23.4 28 0.0006 23.7 0.1 19 15-33 58-76 (396)
44 TIGR02535 hyp_Hser_kinase prop 21.9 27 0.00059 23.7 -0.2 18 16-33 62-79 (396)
45 KOG0157 Cytochrome P450 CYP4/C 21.8 49 0.0011 22.2 1.0 10 19-28 413-422 (497)
46 PF09768 Peptidase_M76: Peptid 20.5 54 0.0012 20.4 0.9 12 11-22 42-53 (173)
No 1
>PRK14388 hypothetical protein; Provisional
Probab=98.83 E-value=2.6e-09 Score=61.00 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=20.4
Q ss_pred hhhhHhh--hhcCCCCCCCCC-CCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP-PRWFDE 28 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP-prw~~~ 28 (34)
.+||+|| |||||+.+|||| |.-.++
T Consensus 47 ~~l~~~RilRC~P~~~gG~DpVP~~~~~ 74 (82)
T PRK14388 47 LWFTFKRIIKCQPFCDGGYDTVPISIKN 74 (82)
T ss_pred HHHHHHHHhcCCCCCCCCcCCCCCcccC
Confidence 5799999 999999999999 443333
No 2
>PRK14383 hypothetical protein; Provisional
Probab=98.80 E-value=4e-09 Score=60.38 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=21.4
Q ss_pred hhhhHhh--hhcCCCCCCCCC-CCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP-PRWFDEES 30 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP-prw~~~~~ 30 (34)
.+||+|| |||||+.+|||| |.-+....
T Consensus 51 ~~l~~~RilRC~P~~~gG~DpvP~~~~~~~ 80 (84)
T PRK14383 51 GWLALWRVLRCNPLVPGGFDPVPEHFPARR 80 (84)
T ss_pred HHHHHHHHhcCCCCCCCCcCCCCCccCcCC
Confidence 5799999 999999999998 44444433
No 3
>TIGR00278 conserved hypothetical protein YidD. This model describes a family of small proteins of unknown function restricted to and broadly but not universally distributed among the Bacteria. Members frequently are found in the vicinity of rnpA, the gene for the protein subunit of ribonuclease P. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli.
Probab=98.78 E-value=3.1e-09 Score=59.60 Aligned_cols=20 Identities=20% Similarity=-0.022 Sum_probs=18.4
Q ss_pred hhhhHhh--hhcCCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDPP 23 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DPp 23 (34)
.+||+|| |||||+.+||||+
T Consensus 43 ~~l~~~RilRC~P~~~gG~Dpv 64 (75)
T TIGR00278 43 GWLTLKRILRCHPLHPGGNDPV 64 (75)
T ss_pred HHHHHHHHhcCCCCCCCCcCCC
Confidence 5799999 9999999999984
No 4
>PRK14390 hypothetical protein; Provisional
Probab=98.78 E-value=3.2e-09 Score=58.16 Aligned_cols=20 Identities=20% Similarity=0.048 Sum_probs=18.5
Q ss_pred hhhhHhh--hhcCCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDPP 23 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DPp 23 (34)
.+||+|| |||||+.+||||+
T Consensus 40 ~~l~~~RilRC~P~~~gG~Dpv 61 (63)
T PRK14390 40 GWLTLRRLSRCHPLTPCGCDPV 61 (63)
T ss_pred HHHHHHHHhcCCCCCCCCcCcC
Confidence 5799999 9999999999994
No 5
>PRK14382 hypothetical protein; Provisional
Probab=98.78 E-value=3.5e-09 Score=58.39 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=18.6
Q ss_pred hhhhHhh--hhcCCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDPP 23 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DPp 23 (34)
.+||+|| |||||+.+|||||
T Consensus 47 ~~l~~~RilRC~P~~~gG~D~p 68 (68)
T PRK14382 47 SLKAFWRILRCNPFSKGGVDYP 68 (68)
T ss_pred HHHHHHHHHhcCCCCCCCCCCC
Confidence 4799999 9999999999997
No 6
>PRK14373 hypothetical protein; Provisional
Probab=98.77 E-value=3.6e-09 Score=59.17 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.5
Q ss_pred hhhhHhh--hhcCCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDPP 23 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DPp 23 (34)
.+||+|| |||||+.+||||+
T Consensus 51 ~~l~~~RilRC~P~~~gG~Dpv 72 (73)
T PRK14373 51 GRLAIKRIARCHPFGGHGHDPV 72 (73)
T ss_pred HHHHHHHHhcCCCCCCCCCCCC
Confidence 4799999 9999999999995
No 7
>PRK14371 hypothetical protein; Provisional
Probab=98.77 E-value=5.5e-09 Score=59.41 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=18.0
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 47 ~~l~~~RilRC~P~~~gG~Dp 67 (81)
T PRK14371 47 GWLSVRRLGRCHPWNPGGYDP 67 (81)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 4799999 999999999999
No 8
>PRK14384 hypothetical protein; Provisional
Probab=98.73 E-value=5.8e-09 Score=56.52 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=18.4
Q ss_pred hhhhHhh--hhcCCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDPP 23 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DPp 23 (34)
.+|++|| |||||+.+||||.
T Consensus 27 ~~l~~~RilRCnP~~~gG~Dpv 48 (56)
T PRK14384 27 SGLTVWRLLRCHPFHPGGVDFV 48 (56)
T ss_pred HHHHHHHHhcCCCCCCCCcCCC
Confidence 4799999 9999999999994
No 9
>PRK14374 hypothetical protein; Provisional
Probab=98.70 E-value=7.6e-09 Score=62.48 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=19.0
Q ss_pred hhhhHhh--hhcCCCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDPPR 24 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DPpr 24 (34)
.+||+|| |||||++||||||.
T Consensus 55 ~~L~~~RIlRCnP~~~GG~D~p~ 77 (118)
T PRK14374 55 MGKIAIRILSCNPFCSGGIAYPT 77 (118)
T ss_pred HHHHHHHHhhCCCCCCCCcCCcH
Confidence 4689999 99999999999974
No 10
>PRK14380 hypothetical protein; Provisional
Probab=98.69 E-value=8.7e-09 Score=58.70 Aligned_cols=20 Identities=15% Similarity=0.042 Sum_probs=18.5
Q ss_pred hhhhHhh--hhcCCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDPP 23 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DPp 23 (34)
.+|++|| |||||+.+||||+
T Consensus 54 ~~l~~~RilRC~P~~~gG~Dpv 75 (81)
T PRK14380 54 LLMALNRLSRCHPWSKGGYDPL 75 (81)
T ss_pred HHHHHHHHHhCCCCCCCCcCCC
Confidence 5799999 9999999999994
No 11
>PRK14387 hypothetical protein; Provisional
Probab=98.68 E-value=1.2e-08 Score=58.50 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=18.0
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 50 ~~l~~~RilRC~P~~~gG~Dp 70 (84)
T PRK14387 50 SWLGLRRICRCNPFGGSGYDP 70 (84)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 5799999 999999999998
No 12
>PRK14385 hypothetical protein; Provisional
Probab=98.67 E-value=1.1e-08 Score=59.95 Aligned_cols=19 Identities=5% Similarity=-0.183 Sum_probs=17.9
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 56 ~~lt~~RIlRCnP~~~gG~Dp 76 (96)
T PRK14385 56 LILITLRIIRCNALFKGGNES 76 (96)
T ss_pred HHHHHHHHhhCCCCCCCCCCC
Confidence 4799999 999999999999
No 13
>PRK14379 hypothetical protein; Provisional
Probab=98.66 E-value=2.1e-08 Score=58.50 Aligned_cols=19 Identities=16% Similarity=-0.092 Sum_probs=17.9
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+|++|| |||||+.+||||
T Consensus 47 ~~l~~~RilRCnP~~~gG~Dp 67 (95)
T PRK14379 47 LIMGLARILRCNPFIRGGVDP 67 (95)
T ss_pred HHHHHHHHHhcCCCCCCCCCC
Confidence 4799999 999999999998
No 14
>PRK14389 hypothetical protein; Provisional
Probab=98.62 E-value=1.9e-08 Score=58.95 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=17.9
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 48 ~~l~~~RilRC~P~~~gG~Dp 68 (98)
T PRK14389 48 SYLTLRRLARCHPWCDGGHDP 68 (98)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 4799999 999999999999
No 15
>PRK14378 hypothetical protein; Provisional
Probab=98.61 E-value=2e-08 Score=59.53 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=18.0
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 58 ~~Lt~~RIlRCnP~~~gG~DP 78 (103)
T PRK14378 58 GYLAVWRVCRCHPWAEGGIDD 78 (103)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 5799999 999999999999
No 16
>PRK14386 hypothetical protein; Provisional
Probab=98.60 E-value=2.1e-08 Score=59.62 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=17.9
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+++||||
T Consensus 47 ~~L~~~RIlRCnP~~~gGyDP 67 (106)
T PRK14386 47 VWLSSKRICRCHPWGGSGYDP 67 (106)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 4799999 999999999999
No 17
>PRK14375 hypothetical protein; Provisional
Probab=98.58 E-value=3e-08 Score=55.31 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=17.8
Q ss_pred hhhhHhh--hhcCCCCCC-CCCC
Q 046607 4 NNYTEWI--ALSSQGGSG-FDPP 23 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G-~DPp 23 (34)
.+||+|| |||||+.+| |||+
T Consensus 41 ~~l~~~RilRCnP~~~gGg~Dpv 63 (70)
T PRK14375 41 LYLTTRRLLRCHPLSKRDYYDLV 63 (70)
T ss_pred HHHHHHHHhcCCCCCCCCCCCCC
Confidence 4799999 999999995 9983
No 18
>PRK14370 hypothetical protein; Provisional
Probab=98.58 E-value=2.7e-08 Score=60.52 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=18.0
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.|||||
T Consensus 55 ~~Lt~~RIlRCnP~~~GG~DP 75 (120)
T PRK14370 55 SLLLLKRIGRCHPLGGHGIDF 75 (120)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 5799999 999999999999
No 19
>PRK14377 hypothetical protein; Provisional
Probab=98.57 E-value=2.9e-08 Score=58.82 Aligned_cols=19 Identities=11% Similarity=-0.216 Sum_probs=17.8
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 52 ~~lt~~RIlRCnP~~~gG~DP 72 (104)
T PRK14377 52 LFLIAKRLLKCGPWCIGGIDL 72 (104)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 4699999 999999999998
No 20
>PRK14372 hypothetical protein; Provisional
Probab=98.57 E-value=3e-08 Score=58.41 Aligned_cols=19 Identities=11% Similarity=0.013 Sum_probs=17.9
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 43 ~~Lt~~RIlRCnP~~~gG~Dp 63 (97)
T PRK14372 43 GVLAVLRLLRCRPWSRGGIDD 63 (97)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 5799999 999999999998
No 21
>PRK14381 hypothetical protein; Provisional
Probab=98.56 E-value=3.3e-08 Score=58.52 Aligned_cols=19 Identities=16% Similarity=-0.156 Sum_probs=17.9
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 57 ~~lt~~RIlRCnP~~~gG~Dp 77 (103)
T PRK14381 57 LWLTIKRIGKCGPWHPGGIDL 77 (103)
T ss_pred HHHHHHHHhhCCCCCCCCcCC
Confidence 4799999 999999999999
No 22
>PRK14391 hypothetical protein; Provisional
Probab=98.55 E-value=3.8e-08 Score=56.35 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=17.9
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 47 ~~l~~~RilRC~P~~~Gg~DP 67 (84)
T PRK14391 47 IQLSAWRILRCNPLSQGFDDP 67 (84)
T ss_pred HHHHHHHHhcCCCCCCCCCCC
Confidence 4799999 999999999999
No 23
>PRK00041 hypothetical protein; Validated
Probab=98.54 E-value=4.6e-08 Score=56.40 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=17.7
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
..|++|| |||||+.+||||
T Consensus 54 ~~l~~~RilRC~P~~~gG~Dp 74 (93)
T PRK00041 54 SWLTLKRILRCHPFHPGGFDP 74 (93)
T ss_pred HHHHHHHHhhcCCCCCCCcCC
Confidence 4789999 999999999998
No 24
>PF01809 Haemolytic: Haemolytic domain; InterPro: IPR002696 This is a family of short (70 amino acid) hypothetical proteins from various bacteria. They contain three conserved cysteine residues. Q44066 from SWISSPROT from Aeromonas hydrophila has been found to have hemolytic activity.
Probab=98.45 E-value=1.1e-07 Score=51.74 Aligned_cols=20 Identities=20% Similarity=0.116 Sum_probs=18.1
Q ss_pred hhhhHhh--hhcCCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDPP 23 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DPp 23 (34)
..||++| ||||++.+||||+
T Consensus 47 ~~l~~~Ri~rC~p~~~gG~Dpv 68 (68)
T PF01809_consen 47 LWLTADRILRCNPFSKGGYDPV 68 (68)
T ss_pred HHHHHHHHHHcCCCCCCCCCCC
Confidence 3689999 9999999999995
No 25
>PRK14369 hypothetical protein; Provisional
Probab=98.41 E-value=1.4e-07 Score=57.27 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=17.9
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 47 ~~Lt~~RIlRCnP~~~GG~Dp 67 (119)
T PRK14369 47 TALTAWRILRCNPWSLGGVDH 67 (119)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 4799999 999999999998
No 26
>PRK14376 hypothetical protein; Provisional
Probab=98.37 E-value=2.9e-07 Score=58.95 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=18.0
Q ss_pred hhhhHhh--hhcCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDP 22 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DP 22 (34)
.+||+|| |||||+.+||||
T Consensus 87 ~~Lt~~RILRCnP~~~GGyDP 107 (176)
T PRK14376 87 GLLAVRRLLRCQPLSAGGYDP 107 (176)
T ss_pred HHHHHHHHhcCCCCCCCCcCC
Confidence 5799999 999999999998
No 27
>COG0759 Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=2.9e-07 Score=53.70 Aligned_cols=20 Identities=20% Similarity=0.049 Sum_probs=18.1
Q ss_pred hhhhHhh--hhcCCCCCCCCCC
Q 046607 4 NNYTEWI--ALSSQGGSGFDPP 23 (34)
Q Consensus 4 ~~LTaWR--RCnP~gg~G~DPp 23 (34)
.+|++.| |||||+.|||||+
T Consensus 52 ~~l~~~RIlrC~Pf~~GG~Dpv 73 (92)
T COG0759 52 LWLTLKRILRCHPFHKGGYDPV 73 (92)
T ss_pred HHHHHHHHHhcCCCCCCCCCCC
Confidence 4789999 9999999999993
No 28
>smart00197 SAA Serum amyloid A proteins. Serum amyloid A proteins are induced during the acute-phase response. Secondary amyloidosis is characterised by the extracellular accumulation in tissues of SAA proteins. SAA proteins are apolipoproteins.
Probab=68.73 E-value=3.8 Score=24.72 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.1
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCC
Q 046607 11 ALSSQGGSGFDPPRWFDEESPPE 33 (34)
Q Consensus 11 RCnP~gg~G~DPprw~~~~~p~~ 33 (34)
.-|=||.+|=||.++.+.++|.+
T Consensus 80 ~An~wGRsG~dpn~frp~glp~k 102 (103)
T smart00197 80 KANEWGRSGKDPNRFRPPGLPEK 102 (103)
T ss_pred HHHHHhhcCCCCCccCCCCCCCC
Confidence 45679999999999999999875
No 29
>PF00277 SAA: Serum amyloid A protein; InterPro: IPR000096 The serum amyloid A (SAA) proteins comprise a family of vertebrate proteins that associate predominantly with high density lipoproteins (HDL) [, ]. The synthesis of certain members of the family is greatly increased (as much as a 1000 fold) in inflammation; thus making SAA a major acute phase reactant. While the major physiological function of SAA is unclear, prolonged elevation of plasma SAA levels, as in chronic inflammation, however, results in a pathological condition, called amyloidosis, which affects the liver, kidney and spleen and which is characterised by the highly insoluble accumulation of SAA in these tissues. SAA are proteins of about 110 amino acid residues. The most highly conserved region is located in the central part of the sequence. The proteins are polymorphic, the various isoforms apparently capable of responding in different ways to different stimuli.; GO: 0006953 acute-phase response, 0005576 extracellular region
Probab=61.40 E-value=7.6 Score=23.23 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.9
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCC
Q 046607 11 ALSSQGGSGFDPPRWFDEESPPE 33 (34)
Q Consensus 11 RCnP~gg~G~DPprw~~~~~p~~ 33 (34)
.-|=||.+|=||.++.+.++|.+
T Consensus 80 ~An~wGRsG~dpn~fRp~gLp~k 102 (103)
T PF00277_consen 80 EANEWGRSGGDPNHFRPAGLPDK 102 (103)
T ss_pred HHHHhccCCCCCCcCCCCCCCCC
Confidence 44669999999999999999875
No 30
>PF09734 Tau95: RNA polymerase III transcription factor (TF)IIIC subunit; InterPro: IPR019136 Transcription factor IIIC (TFIIIC) is a multisubunit DNA binding factor that serves as a dynamic platform for assembly of pre-initiation complexes on class III genes. This entry represents subunit 5 (also known as the tau 95 subunit) which holds a key position in TFIIIC, exerting both upstream and downstream influence on the TFIIIC-DNA complex by rendering the complex more stable []. Once bound to tDNA-intragenic promoter elements, TFIIIC directs the assembly of TFIIIB on the DNA, which in turn recruits the RNA polymerase III (pol III) and activates multiple rounds of transcription.
Probab=55.93 E-value=3.5 Score=26.19 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=8.9
Q ss_pred hhhhcCCCCCCCCC
Q 046607 9 WIALSSQGGSGFDP 22 (34)
Q Consensus 9 WRRCnP~gg~G~DP 22 (34)
||+| |...||||
T Consensus 284 wr~~--~vr~GyDP 295 (310)
T PF09734_consen 284 WRDC--WVRFGYDP 295 (310)
T ss_pred ccce--eEecccCC
Confidence 5544 67889999
No 31
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=34.58 E-value=18 Score=19.40 Aligned_cols=8 Identities=50% Similarity=1.381 Sum_probs=5.7
Q ss_pred CCCCCCCC
Q 046607 21 DPPRWFDE 28 (34)
Q Consensus 21 DPprw~~~ 28 (34)
||+||-+-
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 67898653
No 32
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=33.67 E-value=20 Score=21.06 Aligned_cols=12 Identities=50% Similarity=1.038 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCC
Q 046607 19 GFDPPRWFDEES 30 (34)
Q Consensus 19 G~DPprw~~~~~ 30 (34)
=|||.||.++..
T Consensus 382 ~F~P~R~~~~~~ 393 (463)
T PF00067_consen 382 EFDPERFLDERG 393 (463)
T ss_dssp S--TTGGBTTTS
T ss_pred cccccccccccc
Confidence 478888877753
No 33
>KOG4330 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.21 E-value=20 Score=23.87 Aligned_cols=12 Identities=0% Similarity=-0.396 Sum_probs=9.0
Q ss_pred hhhcCCCCCCCC
Q 046607 10 IALSSQGGSGFD 21 (34)
Q Consensus 10 RRCnP~gg~G~D 21 (34)
|||+||+.-|=.
T Consensus 26 rrC~Pf~a~~~t 37 (206)
T KOG4330|consen 26 RRCAPFRAPMGT 37 (206)
T ss_pred ccCCCCCCCCCC
Confidence 499999887443
No 34
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=31.75 E-value=53 Score=19.40 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=13.4
Q ss_pred hhhHh-hhhcCCCCCCCCCC-CC
Q 046607 5 NYTEW-IALSSQGGSGFDPP-RW 25 (34)
Q Consensus 5 ~LTaW-RRCnP~gg~G~DPp-rw 25 (34)
++..| |+|.| .++-|+. |.
T Consensus 64 i~s~ygr~C~~--s~~~~~~~R~ 84 (92)
T PF05767_consen 64 IFSMYGRYCRP--SSKVIDNGRY 84 (92)
T ss_pred HHHHHhhhcCC--CCCcCccccc
Confidence 56778 79999 6666664 44
No 35
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=30.87 E-value=14 Score=24.26 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=13.6
Q ss_pred hhhHhh-hhcC-------CCCCCCCC
Q 046607 5 NYTEWI-ALSS-------QGGSGFDP 22 (34)
Q Consensus 5 ~LTaWR-RCnP-------~gg~G~DP 22 (34)
-+|-|| +|+| .+..|||-
T Consensus 77 evt~Wree~dpi~evgSVYtaQGFdl 102 (191)
T COG3410 77 EVTPWREELDPIKEVGSVYTAQGFDL 102 (191)
T ss_pred cCCccccCCChHHHhhhhheeccccc
Confidence 456799 9999 46778875
No 36
>PLN03234 cytochrome P450 83B1; Provisional
Probab=30.38 E-value=25 Score=22.68 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCC
Q 046607 17 GSGFDPPRWFDEE 29 (34)
Q Consensus 17 g~G~DPprw~~~~ 29 (34)
..=|||.||.+++
T Consensus 407 P~~F~PeR~l~~~ 419 (499)
T PLN03234 407 PNEFIPERFMKEH 419 (499)
T ss_pred hhhcCchhhcCCC
Confidence 5668999997653
No 37
>PF06875 PRF: Plethodontid receptivity factor PRF; InterPro: IPR010681 This family consists of several plethodontid receptivity factor (PRF) proteins which seem to be specific to Plethodon jordani (Jordan's salamander). PRF is a courtship pheromone produced by males increase female receptivity [].
Probab=30.27 E-value=51 Score=21.79 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.1
Q ss_pred hcCCCCCCCCCCCCCCCCCCC
Q 046607 12 LSSQGGSGFDPPRWFDEESPP 32 (34)
Q Consensus 12 CnP~gg~G~DPprw~~~~~p~ 32 (34)
=.||+.-||.||++.-+..|.
T Consensus 64 G~PFs~PdFs~P~l~~~~LPs 84 (214)
T PF06875_consen 64 GSPFSDPDFSPPRLQLSGLPS 84 (214)
T ss_pred CCCCCCCCCCCCcCCcCCCCC
Confidence 369999999999999887775
No 38
>PF02467 Whib: Transcription factor WhiB; InterPro: IPR003482 WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation. The process of mycelium formation in Streptomyces, which occurs in response to nutrient limitation, is controlled by a number of whi genes, named for the white colour of aerial hyphae when mutations occur in these genes. The normal colour is grey. The exact role of WhiB is not clear, but a mutation in the gene results in white, tightly coiled aerial hyphae.
Probab=29.32 E-value=22 Score=18.69 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCC
Q 046607 19 GFDPPRWFDEES 30 (34)
Q Consensus 19 G~DPprw~~~~~ 30 (34)
|-||..||++..
T Consensus 9 ~~dpd~ffP~~~ 20 (66)
T PF02467_consen 9 GTDPDLFFPERG 20 (66)
T ss_pred CCCHhHhCCCCC
Confidence 679999997543
No 39
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=29.05 E-value=33 Score=22.68 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=11.4
Q ss_pred hhcCCCCCCCCCCC
Q 046607 11 ALSSQGGSGFDPPR 24 (34)
Q Consensus 11 RCnP~gg~G~DPpr 24 (34)
-|+-+.+|||+|.+
T Consensus 63 ~C~~~~~GGy~~~~ 76 (194)
T KOG3314|consen 63 VCTGPVAGGYTPGR 76 (194)
T ss_pred eCCCCccCCccCCC
Confidence 47889999999953
No 40
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=25.88 E-value=23 Score=24.29 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 046607 16 GGSGFDPPRWFDEESPPE 33 (34)
Q Consensus 16 gg~G~DPprw~~~~~p~~ 33 (34)
.--||||.+++..+.|.|
T Consensus 64 sl~GYdp~~~y~GRg~lE 81 (412)
T PRK04024 64 AILGYDPYKYYTGRGPFE 81 (412)
T ss_pred hhhCCChhhhcCCccHHH
Confidence 345999998888776654
No 41
>PF10477 EIF4E-T: Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E; InterPro: IPR018862 EIF4E-T is the transporter protein for shuttling the mRNA cap-binding protein EIF4E protein, targeting it for nuclear import. EIF4E-T contains several key binding domains including two functional leucine-rich NESs (nuclear export signals) between residues 438-447 and 613-638 in the human protein. The other two binding domains are an EIF4E-binding site, between residues 27-42 in Q9EST3 from SWISSPROT, and a bipartite NLS (nuclear localisation signals) between 194-211, and these lie in family EIF4E-T_N. EIF4E is the eukaryotic translation initiation factor 4E that is the rate-limiting factor for cap-dependent translation initiation [].
Probab=25.73 E-value=29 Score=24.91 Aligned_cols=24 Identities=21% Similarity=0.542 Sum_probs=16.6
Q ss_pred hhhHhh-hhcCC------CCCCCCCCCCCCC
Q 046607 5 NYTEWI-ALSSQ------GGSGFDPPRWFDE 28 (34)
Q Consensus 5 ~LTaWR-RCnP~------gg~G~DPprw~~~ 28 (34)
.|..|+ --+|- ..++|||++|-.-
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~ 59 (578)
T PF10477_consen 29 TLNFWKINPNPPSLRRNNSKGVWDPERWHSS 59 (578)
T ss_pred cccccccccccccccccccCCccCchhhccc
Confidence 356677 44443 5789999999763
No 42
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=24.22 E-value=36 Score=24.09 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=8.5
Q ss_pred hhhhHhhhhc
Q 046607 4 NNYTEWIALS 13 (34)
Q Consensus 4 ~~LTaWRRCn 13 (34)
.+|.+||+|+
T Consensus 688 ~iL~~W~~~e 697 (715)
T PF08314_consen 688 EILAQWRRLE 697 (715)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4799999986
No 43
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=23.44 E-value=28 Score=23.73 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 046607 15 QGGSGFDPPRWFDEESPPE 33 (34)
Q Consensus 15 ~gg~G~DPprw~~~~~p~~ 33 (34)
++--||||.+.+..+.|.|
T Consensus 58 l~llGYdp~~~y~GRg~lE 76 (396)
T TIGR00306 58 LSILGYDPYEEYTGRGPIE 76 (396)
T ss_pred hhhccCCchhccCCccHHH
Confidence 3445999988888776654
No 44
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=21.86 E-value=27 Score=23.69 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 046607 16 GGSGFDPPRWFDEESPPE 33 (34)
Q Consensus 16 gg~G~DPprw~~~~~p~~ 33 (34)
+--||||.+++..+.|.|
T Consensus 62 sl~GYdp~~~y~GRgplE 79 (396)
T TIGR02535 62 SLLGYDPRKYYTGRAPLE 79 (396)
T ss_pred HhhCCChhhccCCccHHH
Confidence 445899988776665543
No 45
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=21.84 E-value=49 Score=22.22 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=8.3
Q ss_pred CCCCCCCCCC
Q 046607 19 GFDPPRWFDE 28 (34)
Q Consensus 19 G~DPprw~~~ 28 (34)
=|||.||.++
T Consensus 413 ~F~PeRf~~~ 422 (497)
T KOG0157|consen 413 EFDPERFLDG 422 (497)
T ss_pred hcCccccCCC
Confidence 4999999965
No 46
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=20.52 E-value=54 Score=20.35 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=10.7
Q ss_pred hhcCCCCCCCCC
Q 046607 11 ALSSQGGSGFDP 22 (34)
Q Consensus 11 RCnP~gg~G~DP 22 (34)
.|.+...|||||
T Consensus 42 ~C~~~~~Ggf~p 53 (173)
T PF09768_consen 42 PCDSSVSGGFDP 53 (173)
T ss_pred ECcCCCcCCccC
Confidence 688889999999
Done!