Query 046608
Match_columns 256
No_of_seqs 134 out of 1878
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322 GDP-mannose pyrophosph 100.0 2.3E-50 5E-55 322.1 24.1 256 1-256 10-266 (371)
2 COG1209 RfbA dTDP-glucose pyro 100.0 4.3E-44 9.2E-49 281.1 25.6 242 1-247 1-249 (286)
3 cd06425 M1P_guanylylT_B_like_N 100.0 1.4E-43 3.1E-48 286.3 28.5 232 1-234 1-233 (233)
4 COG1208 GCD1 Nucleoside-diphos 100.0 1.2E-43 2.5E-48 301.3 28.9 252 1-256 2-263 (358)
5 TIGR01105 galF UTP-glucose-1-p 100.0 4.2E-42 9.1E-47 284.6 27.7 230 1-234 4-277 (297)
6 cd06428 M1P_guanylylT_A_like_N 100.0 3.6E-41 7.8E-46 276.0 25.9 229 3-232 1-256 (257)
7 PF00483 NTP_transferase: Nucl 100.0 2.9E-41 6.2E-46 275.4 24.3 232 2-235 1-247 (248)
8 PRK10122 GalU regulator GalF; 100.0 2.5E-40 5.3E-45 274.7 27.6 230 1-234 4-277 (297)
9 cd02538 G1P_TT_short G1P_TT_sh 100.0 2.9E-40 6.3E-45 268.1 26.9 228 1-233 1-237 (240)
10 PRK15480 glucose-1-phosphate t 100.0 4.2E-40 9.2E-45 272.0 27.2 235 1-242 4-248 (292)
11 TIGR01207 rmlA glucose-1-phosp 100.0 4.7E-40 1E-44 271.4 26.5 238 2-245 1-247 (286)
12 PRK05293 glgC glucose-1-phosph 100.0 4.1E-40 8.9E-45 284.2 26.2 234 1-236 4-260 (380)
13 TIGR01208 rmlA_long glucose-1- 100.0 2E-39 4.3E-44 277.2 28.4 248 2-255 1-255 (353)
14 TIGR02623 G1P_cyt_trans glucos 100.0 3.9E-39 8.4E-44 263.0 27.6 226 2-235 1-246 (254)
15 cd04189 G1P_TT_long G1P_TT_lon 100.0 1.5E-38 3.2E-43 257.6 28.7 229 1-235 1-235 (236)
16 cd06915 NTP_transferase_WcbM_l 100.0 1.6E-38 3.5E-43 255.0 26.5 222 3-229 1-222 (223)
17 PRK00844 glgC glucose-1-phosph 100.0 6.9E-39 1.5E-43 278.1 25.0 235 1-236 6-278 (407)
18 cd06422 NTP_transferase_like_1 100.0 2.2E-38 4.8E-43 254.0 25.6 218 2-229 1-221 (221)
19 PRK13389 UTP--glucose-1-phosph 100.0 5.9E-38 1.3E-42 260.8 27.4 230 1-234 9-280 (302)
20 cd02524 G1P_cytidylyltransfera 100.0 1.8E-37 3.8E-42 253.6 26.9 225 3-233 1-245 (253)
21 cd02541 UGPase_prokaryotic Pro 100.0 1.8E-37 3.9E-42 255.6 26.3 230 1-234 1-265 (267)
22 PRK02862 glgC glucose-1-phosph 100.0 5.2E-37 1.1E-41 267.7 26.2 233 1-234 4-273 (429)
23 PRK00725 glgC glucose-1-phosph 100.0 5.7E-37 1.2E-41 267.1 26.2 234 1-235 16-288 (425)
24 TIGR01099 galU UTP-glucose-1-p 100.0 7.1E-37 1.5E-41 251.1 25.0 225 1-229 1-260 (260)
25 cd06426 NTP_transferase_like_2 100.0 1.6E-36 3.5E-41 243.1 26.3 219 3-230 1-220 (220)
26 COG0448 GlgC ADP-glucose pyrop 100.0 7.3E-38 1.6E-42 259.0 18.7 233 2-235 7-262 (393)
27 PLN02241 glucose-1-phosphate a 100.0 8.6E-37 1.9E-41 267.0 24.7 235 1-236 4-283 (436)
28 TIGR02091 glgC glucose-1-phosp 100.0 1.2E-36 2.5E-41 261.1 24.9 233 3-236 1-260 (361)
29 TIGR02092 glgD glucose-1-phosp 100.0 4.5E-37 9.7E-42 264.2 21.6 235 1-237 3-256 (369)
30 cd04181 NTP_transferase NTP_tr 100.0 5.5E-36 1.2E-40 239.4 25.4 214 3-221 1-217 (217)
31 COG1210 GalU UDP-glucose pyrop 100.0 8.5E-35 1.8E-39 228.8 22.8 234 1-238 5-274 (291)
32 KOG1460 GDP-mannose pyrophosph 100.0 4.4E-35 9.6E-40 231.3 14.9 255 1-255 3-289 (407)
33 cd02523 PC_cytidylyltransferas 100.0 1.5E-32 3.3E-37 221.3 21.6 215 3-230 1-229 (229)
34 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 4.6E-32 1E-36 218.8 22.5 216 3-227 1-231 (231)
35 COG1207 GlmU N-acetylglucosami 100.0 8.9E-32 1.9E-36 223.1 23.2 228 1-237 3-246 (460)
36 PRK14352 glmU bifunctional N-a 100.0 1.3E-31 2.8E-36 237.7 24.4 228 1-236 5-252 (482)
37 PRK14355 glmU bifunctional N-a 100.0 2.3E-31 5E-36 234.9 25.1 226 1-236 4-245 (459)
38 COG1213 Predicted sugar nucleo 100.0 1.4E-31 3E-36 207.0 18.8 221 1-239 4-234 (239)
39 PRK14356 glmU bifunctional N-a 100.0 1E-30 2.3E-35 230.8 25.0 223 1-236 6-246 (456)
40 PRK14358 glmU bifunctional N-a 100.0 4.1E-30 8.8E-35 227.5 24.1 219 1-230 8-241 (481)
41 TIGR01173 glmU UDP-N-acetylglu 100.0 6.3E-30 1.4E-34 225.7 24.2 221 1-235 1-237 (451)
42 cd02540 GT2_GlmU_N_bac N-termi 100.0 1E-29 2.2E-34 204.8 21.8 213 3-226 1-229 (229)
43 cd02508 ADP_Glucose_PP ADP-glu 100.0 2.7E-30 6E-35 203.9 17.9 183 3-220 1-200 (200)
44 PRK14359 glmU bifunctional N-a 100.0 2.5E-29 5.3E-34 220.6 25.3 240 1-255 3-266 (430)
45 PRK14353 glmU bifunctional N-a 100.0 2.6E-29 5.6E-34 221.3 24.4 225 1-236 6-245 (446)
46 cd04197 eIF-2B_epsilon_N The N 100.0 9.7E-30 2.1E-34 203.2 19.7 180 1-184 1-217 (217)
47 cd02509 GDP-M1P_Guanylyltransf 100.0 5.8E-30 1.3E-34 210.8 17.4 221 1-225 1-273 (274)
48 cd02517 CMP-KDO-Synthetase CMP 100.0 6.3E-29 1.4E-33 201.5 22.9 216 1-231 2-238 (239)
49 PRK05450 3-deoxy-manno-octulos 100.0 1.4E-28 3E-33 200.3 23.8 216 2-233 4-244 (245)
50 PRK09451 glmU bifunctional N-a 100.0 1.4E-28 3E-33 217.2 22.1 216 1-231 6-243 (456)
51 PRK14354 glmU bifunctional N-a 100.0 6.5E-28 1.4E-32 213.2 25.4 225 1-237 3-243 (458)
52 TIGR01479 GMP_PMI mannose-1-ph 100.0 7.3E-28 1.6E-32 211.5 20.6 226 1-230 1-281 (468)
53 PRK14357 glmU bifunctional N-a 100.0 1.9E-27 4.2E-32 209.6 23.4 216 1-235 1-231 (448)
54 PRK14360 glmU bifunctional N-a 100.0 5.9E-27 1.3E-31 206.6 24.8 222 1-235 2-238 (450)
55 PRK13368 3-deoxy-manno-octulos 100.0 7.6E-27 1.7E-31 189.2 22.4 211 2-231 4-236 (238)
56 cd04198 eIF-2B_gamma_N The N-t 99.9 3.3E-26 7.1E-31 182.4 16.8 179 1-183 1-213 (214)
57 cd02507 eIF-2B_gamma_N_like Th 99.9 3.2E-26 6.9E-31 182.7 16.6 179 1-183 1-215 (216)
58 COG0836 {ManC} Mannose-1-phosp 99.9 2.4E-24 5.2E-29 173.7 19.3 229 1-231 2-283 (333)
59 COG4750 LicC CTP:phosphocholin 99.9 5.9E-24 1.3E-28 158.3 15.1 215 1-234 1-226 (231)
60 PLN02917 CMP-KDO synthetase 99.9 1.1E-22 2.4E-27 168.5 22.3 216 2-235 49-289 (293)
61 PRK15460 cpsB mannose-1-phosph 99.9 2.3E-23 4.9E-28 181.7 17.2 227 1-230 6-290 (478)
62 KOG1462 Translation initiation 99.9 5E-22 1.1E-26 162.8 13.7 227 1-230 10-306 (433)
63 TIGR00466 kdsB 3-deoxy-D-manno 99.9 6.4E-20 1.4E-24 148.2 22.4 210 3-226 2-237 (238)
64 PRK09382 ispDF bifunctional 2- 99.9 3.6E-20 7.9E-25 157.9 19.4 205 1-235 6-214 (378)
65 cd02513 CMP-NeuAc_Synthase CMP 99.9 1.1E-19 2.5E-24 145.7 19.1 206 1-232 2-222 (223)
66 TIGR00453 ispD 2-C-methyl-D-er 99.9 4.5E-20 9.7E-25 147.5 16.6 206 2-232 1-216 (217)
67 PRK00155 ispD 2-C-methyl-D-ery 99.8 1.2E-19 2.6E-24 146.0 18.0 214 1-236 4-225 (227)
68 TIGR00454 conserved hypothetic 99.8 2.3E-19 4.9E-24 139.0 18.0 179 1-230 1-181 (183)
69 cd02516 CDP-ME_synthetase CDP- 99.8 1.2E-19 2.5E-24 145.2 16.0 209 2-228 2-217 (218)
70 COG2068 Uncharacterized MobA-r 99.8 5.6E-19 1.2E-23 134.6 17.4 186 2-233 7-197 (199)
71 COG1212 KdsB CMP-2-keto-3-deox 99.8 3.2E-18 7E-23 131.3 19.9 220 2-235 5-244 (247)
72 TIGR03584 PseF pseudaminic aci 99.8 4.2E-18 9.1E-23 136.0 21.5 204 3-233 2-220 (222)
73 COG2266 GTP:adenosylcobinamide 99.8 2.3E-18 4.9E-23 127.6 17.0 110 1-126 1-112 (177)
74 cd04182 GT_2_like_f GT_2_like_ 99.8 1.1E-18 2.3E-23 136.0 15.5 119 1-130 1-121 (186)
75 cd02503 MobA MobA catalyzes th 99.8 1.3E-18 2.8E-23 135.1 14.9 107 1-125 1-109 (181)
76 TIGR03310 matur_ygfJ molybdenu 99.8 2.3E-18 5E-23 134.5 16.2 181 3-228 2-187 (188)
77 PRK13385 2-C-methyl-D-erythrit 99.8 3.2E-18 7E-23 137.9 17.0 214 2-236 4-226 (230)
78 PF12804 NTP_transf_3: MobA-li 99.8 1.2E-18 2.7E-23 132.5 13.3 120 3-137 1-123 (160)
79 PRK00317 mobA molybdopterin-gu 99.8 4.2E-18 9.1E-23 133.6 15.1 110 1-126 4-115 (193)
80 TIGR03202 pucB xanthine dehydr 99.8 6.8E-18 1.5E-22 132.1 15.4 123 1-129 1-125 (190)
81 TIGR02665 molyb_mobA molybdopt 99.8 4.7E-17 1E-21 126.9 15.4 115 1-129 1-117 (186)
82 PLN02728 2-C-methyl-D-erythrit 99.7 2.6E-16 5.6E-21 127.6 19.5 211 1-234 25-245 (252)
83 PRK02726 molybdopterin-guanine 99.7 9.7E-17 2.1E-21 126.4 15.4 111 1-127 8-120 (200)
84 KOG1461 Translation initiation 99.7 9.7E-16 2.1E-20 133.1 21.5 234 1-238 25-294 (673)
85 PF01128 IspD: 2-C-methyl-D-er 99.7 9.9E-16 2.1E-20 121.3 19.2 209 1-233 1-219 (221)
86 PRK14489 putative bifunctional 99.7 4.1E-16 9E-21 133.5 15.7 187 1-233 6-197 (366)
87 COG1211 IspD 4-diphosphocytidy 99.7 2.3E-15 5E-20 118.7 18.3 212 1-233 5-226 (230)
88 cd02518 GT2_SpsF SpsF is a gly 99.7 2.6E-15 5.7E-20 121.3 18.0 187 3-234 2-203 (233)
89 PRK00560 molybdopterin-guanine 99.7 3.2E-15 7E-20 117.4 16.9 174 1-233 9-191 (196)
90 COG1083 NeuA CMP-N-acetylneura 99.7 6.8E-15 1.5E-19 112.4 15.7 205 3-236 6-225 (228)
91 COG0746 MobA Molybdopterin-gua 99.7 5.9E-15 1.3E-19 114.6 14.6 110 1-129 5-116 (192)
92 PRK14490 putative bifunctional 99.6 1.9E-14 4E-19 123.6 17.2 107 1-124 175-283 (369)
93 PRK14500 putative bifunctional 99.6 6.6E-14 1.4E-18 118.2 15.6 108 1-125 161-270 (346)
94 cd04180 UGPase_euk_like Eukary 99.4 2.3E-13 5E-18 111.3 4.9 157 2-165 2-175 (266)
95 PF02348 CTP_transf_3: Cytidyl 99.3 5.4E-11 1.2E-15 94.9 12.9 116 3-131 2-120 (217)
96 cd04193 UDPGlcNAc_PPase UDPGlc 99.2 9.9E-10 2.1E-14 92.2 15.4 183 1-188 16-255 (323)
97 PTZ00339 UDP-N-acetylglucosami 99.1 5.1E-09 1.1E-13 91.8 17.6 183 1-187 107-349 (482)
98 PRK00576 molybdopterin-guanine 99.1 1.7E-09 3.8E-14 83.6 12.2 95 21-126 3-101 (178)
99 cd00897 UGPase_euk Eukaryotic 98.8 1.3E-06 2.8E-11 72.4 19.4 222 2-232 5-296 (300)
100 PLN02474 UTP--glucose-1-phosph 98.8 1.5E-06 3.3E-11 75.8 18.9 230 2-237 81-376 (469)
101 COG1861 SpsF Spore coat polysa 98.7 8.5E-08 1.8E-12 74.2 9.5 114 3-132 5-124 (241)
102 PF01704 UDPGP: UTP--glucose-1 98.6 8.9E-06 1.9E-10 70.7 19.8 225 2-233 58-355 (420)
103 TIGR03552 F420_cofC 2-phospho- 98.5 5.7E-06 1.2E-10 64.9 13.3 86 31-126 30-117 (195)
104 PLN02435 probable UDP-N-acetyl 98.3 3.6E-05 7.9E-10 67.8 16.2 180 3-187 119-362 (493)
105 COG4284 UDP-glucose pyrophosph 98.3 5.5E-05 1.2E-09 65.4 15.2 181 2-187 107-337 (472)
106 cd06424 UGGPase UGGPase cataly 98.2 6.1E-05 1.3E-09 62.8 14.7 182 2-187 2-250 (315)
107 PLN02830 UDP-sugar pyrophospho 98.0 0.00056 1.2E-08 62.2 16.5 145 2-150 130-323 (615)
108 COG1920 Predicted nucleotidylt 97.4 0.0022 4.8E-08 48.9 10.0 106 1-126 1-112 (210)
109 PF00535 Glycos_transf_2: Glyc 97.2 0.0041 8.8E-08 46.4 9.8 104 31-138 10-116 (169)
110 cd00761 Glyco_tranf_GTA_type G 97.2 0.0072 1.6E-07 44.0 10.8 90 31-124 9-101 (156)
111 PF01983 CofC: Guanylyl transf 96.9 0.0018 3.9E-08 51.3 5.1 107 1-124 1-112 (217)
112 KOG2978 Dolichol-phosphate man 96.9 0.022 4.9E-07 43.5 10.2 113 30-147 17-135 (238)
113 cd04188 DPG_synthase DPG_synth 96.7 0.023 5.1E-07 44.7 10.3 102 32-136 10-118 (211)
114 cd06427 CESA_like_2 CESA_like_ 96.7 0.037 8E-07 44.6 11.4 102 32-136 14-120 (241)
115 cd06423 CESA_like CESA_like is 96.4 0.063 1.4E-06 40.0 10.7 95 31-128 9-106 (180)
116 cd04195 GT2_AmsE_like GT2_AmsE 96.4 0.088 1.9E-06 40.8 11.3 98 26-128 4-108 (201)
117 cd06439 CESA_like_1 CESA_like_ 96.1 0.19 4.2E-06 40.5 12.3 101 25-131 34-140 (251)
118 cd04186 GT_2_like_c Subfamily 96.0 0.16 3.4E-06 37.7 11.0 94 29-129 7-103 (166)
119 cd04196 GT_2_like_d Subfamily 96.0 0.11 2.4E-06 40.5 10.5 96 31-129 10-108 (214)
120 cd02510 pp-GalNAc-T pp-GalNAc- 96.0 0.63 1.4E-05 38.8 15.5 94 32-130 12-113 (299)
121 cd04179 DPM_DPG-synthase_like 96.0 0.15 3.3E-06 38.8 10.8 101 32-136 10-115 (185)
122 cd04187 DPM1_like_bac Bacteria 96.0 0.12 2.6E-06 39.5 10.2 83 47-135 30-114 (181)
123 cd06442 DPM1_like DPM1_like re 96.0 0.15 3.2E-06 40.3 11.0 100 32-135 10-113 (224)
124 PRK10714 undecaprenyl phosphat 95.8 0.12 2.7E-06 43.8 10.4 82 48-133 40-122 (325)
125 cd06421 CESA_CelA_like CESA_Ce 95.8 0.31 6.6E-06 38.7 12.1 99 26-128 7-112 (234)
126 PLN02726 dolichyl-phosphate be 95.7 0.12 2.6E-06 41.7 9.7 104 29-135 19-128 (243)
127 cd06438 EpsO_like EpsO protein 95.7 0.4 8.6E-06 36.7 12.2 102 26-132 3-112 (183)
128 cd06434 GT2_HAS Hyaluronan syn 95.7 0.17 3.7E-06 40.3 10.3 92 29-126 10-103 (235)
129 cd04185 GT_2_like_b Subfamily 95.6 0.2 4.3E-06 39.0 10.1 96 29-126 7-105 (202)
130 cd02525 Succinoglycan_BP_ExoA 95.4 0.29 6.3E-06 39.2 10.8 100 30-134 11-115 (249)
131 TIGR03532 DapD_Ac 2,3,4,5-tetr 95.3 0.0045 9.7E-08 49.8 -0.1 54 196-255 31-99 (231)
132 cd02520 Glucosylceramide_synth 95.3 0.47 1E-05 36.8 11.4 94 30-126 12-112 (196)
133 cd06433 GT_2_WfgS_like WfgS an 95.3 0.29 6.3E-06 37.5 10.1 93 29-128 8-103 (202)
134 cd06435 CESA_NdvC_like NdvC_li 94.9 0.49 1.1E-05 37.7 10.6 100 26-126 4-110 (236)
135 TIGR03472 HpnI hopanoid biosyn 94.7 0.41 8.8E-06 41.5 10.4 102 25-129 46-155 (373)
136 PRK11204 N-glycosyltransferase 94.7 0.46 1E-05 41.7 10.8 95 29-128 64-162 (420)
137 PRK10073 putative glycosyl tra 94.7 0.52 1.1E-05 40.1 10.8 101 29-135 16-120 (328)
138 cd02511 Beta4Glucosyltransfera 94.6 0.69 1.5E-05 36.9 10.9 90 29-129 10-100 (229)
139 cd04192 GT_2_like_e Subfamily 94.5 0.59 1.3E-05 36.8 10.3 104 26-132 3-114 (229)
140 TIGR03111 glyc2_xrt_Gpos1 puta 94.4 0.84 1.8E-05 40.5 11.9 96 29-129 59-160 (439)
141 PTZ00260 dolichyl-phosphate be 94.4 0.65 1.4E-05 39.6 10.7 181 29-213 80-286 (333)
142 TIGR03469 HonB hopene-associat 94.4 0.55 1.2E-05 40.8 10.4 104 29-132 50-165 (384)
143 cd04184 GT2_RfbC_Mx_like Myxoc 94.2 0.93 2E-05 35.0 10.6 94 29-126 11-109 (202)
144 PRK14583 hmsR N-glycosyltransf 94.0 0.62 1.3E-05 41.4 10.1 100 24-128 79-183 (444)
145 COG1215 Glycosyltransferases, 93.9 0.75 1.6E-05 40.5 10.5 99 29-131 64-168 (439)
146 cd06437 CESA_CaSu_A2 Cellulose 93.9 0.64 1.4E-05 37.0 9.3 92 29-125 11-112 (232)
147 PRK10063 putative glycosyl tra 93.6 1.8 3.9E-05 35.1 11.5 95 29-129 11-110 (248)
148 TIGR01556 rhamnosyltran L-rham 93.6 0.93 2E-05 37.4 10.0 98 32-135 8-108 (281)
149 cd02526 GT2_RfbF_like RfbF is 93.4 3.2 6.9E-05 32.9 15.0 90 28-122 6-97 (237)
150 cd06913 beta3GnTL1_like Beta 1 93.4 2.4 5.1E-05 33.3 11.8 99 29-130 7-114 (219)
151 cd06420 GT2_Chondriotin_Pol_N 92.9 1.5 3.2E-05 33.1 9.6 92 31-125 9-104 (182)
152 PRK10018 putative glycosyl tra 92.6 2.7 5.8E-05 34.9 11.2 93 29-127 15-112 (279)
153 KOG2388 UDP-N-acetylglucosamin 92.4 0.37 7.9E-06 42.3 5.9 62 2-66 99-175 (477)
154 PF13641 Glyco_tranf_2_3: Glyc 92.2 0.49 1.1E-05 37.5 6.2 104 26-132 7-118 (228)
155 PF10111 Glyco_tranf_2_2: Glyc 92.2 3.4 7.3E-05 34.2 11.4 83 38-123 23-111 (281)
156 PRK11498 bcsA cellulose syntha 91.3 3.4 7.4E-05 39.8 11.6 103 26-137 266-375 (852)
157 cd06436 GlcNAc-1-P_transferase 91.2 3.7 7.9E-05 31.6 10.1 97 29-126 7-115 (191)
158 PRK13915 putative glucosyl-3-p 90.6 3.7 7.9E-05 34.6 10.1 196 29-233 41-259 (306)
159 cd02522 GT_2_like_a GT_2_like_ 88.4 9.5 0.00021 29.7 10.6 88 31-129 11-101 (221)
160 TIGR03030 CelA cellulose synth 88.3 6.4 0.00014 37.4 10.9 107 25-136 136-263 (713)
161 PF13704 Glyco_tranf_2_4: Glyc 87.6 6.7 0.00014 26.4 8.5 79 31-114 4-84 (97)
162 PRK14716 bacteriophage N4 adso 86.1 11 0.00024 34.2 10.6 95 29-123 76-180 (504)
163 COG1216 Predicted glycosyltran 84.7 12 0.00026 31.3 9.8 105 26-133 10-117 (305)
164 cd04191 Glucan_BSP_ModH Glucan 82.4 25 0.00055 28.6 12.2 63 72-136 66-130 (254)
165 COG0299 PurN Folate-dependent 82.3 8.7 0.00019 29.9 7.1 87 1-115 1-93 (200)
166 PF07959 Fucokinase: L-fucokin 80.2 3.8 8.2E-05 36.1 5.2 80 104-187 55-156 (414)
167 PRK13412 fkp bifunctional fuco 80.1 4.3 9.4E-05 39.6 5.9 120 104-229 154-307 (974)
168 KOG2638 UDP-glucose pyrophosph 75.4 57 0.0012 28.7 15.0 133 3-139 106-275 (498)
169 PF14134 DUF4301: Domain of un 74.7 30 0.00066 31.0 9.0 94 20-116 165-297 (513)
170 KOG2977 Glycosyltransferase [G 74.5 30 0.00065 28.8 8.3 89 33-124 85-181 (323)
171 PF05060 MGAT2: N-acetylglucos 74.3 6.9 0.00015 33.5 4.9 55 13-67 24-82 (356)
172 PRK11234 nfrB bacteriophage N4 74.2 41 0.00088 32.2 10.4 99 29-127 73-181 (727)
173 cd01025 TOPRIM_recR TOPRIM_rec 68.9 26 0.00056 24.7 6.1 53 33-85 44-98 (112)
174 COG0463 WcaA Glycosyltransfera 68.2 31 0.00068 25.7 7.3 90 29-123 13-105 (291)
175 cd04190 Chitin_synth_C C-termi 68.0 52 0.0011 26.3 8.7 26 103-128 75-101 (244)
176 PF09837 DUF2064: Uncharacteri 67.6 19 0.00042 25.7 5.4 84 38-128 2-88 (122)
177 PF07302 AroM: AroM protein; 67.4 63 0.0014 25.9 9.4 108 3-123 91-198 (221)
178 cd02514 GT13_GLCNAC-TI GT13_GL 65.2 89 0.0019 26.8 10.4 94 27-122 7-118 (334)
179 PRK05454 glucosyltransferase M 64.1 1.3E+02 0.0029 28.6 11.5 110 25-136 129-255 (691)
180 TIGR00639 PurN phosphoribosylg 63.5 57 0.0012 25.4 7.7 87 1-115 1-93 (190)
181 PLN02331 phosphoribosylglycina 62.7 35 0.00075 27.0 6.4 86 2-115 1-92 (207)
182 PRK05647 purN phosphoribosylgl 61.9 46 0.001 26.1 7.0 87 1-115 2-94 (200)
183 COG1737 RpiR Transcriptional r 61.3 94 0.002 25.7 10.3 96 32-138 118-213 (281)
184 TIGR00615 recR recombination p 60.5 60 0.0013 25.4 7.2 53 33-85 122-176 (195)
185 COG2179 Predicted hydrolase of 59.8 76 0.0016 24.2 7.4 83 23-115 37-122 (175)
186 COG2247 LytB Putative cell wal 59.5 56 0.0012 27.6 7.3 82 35-127 65-153 (337)
187 PF00583 Acetyltransf_1: Acety 57.5 22 0.00047 22.6 3.9 37 30-66 43-79 (83)
188 PRK13010 purU formyltetrahydro 56.2 52 0.0011 27.5 6.7 75 32-115 105-183 (289)
189 PRK15489 nfrB bacteriophage N4 55.9 1.6E+02 0.0034 28.2 10.4 100 29-128 81-190 (703)
190 KOG2791 N-acetylglucosaminyltr 54.8 24 0.00053 30.0 4.5 43 25-67 122-168 (455)
191 TIGR00655 PurU formyltetrahydr 54.4 36 0.00078 28.3 5.5 76 31-115 95-174 (280)
192 PLN02828 formyltetrahydrofolat 54.1 50 0.0011 27.3 6.2 74 32-115 82-161 (268)
193 PRK13844 recombination protein 52.9 1E+02 0.0022 24.2 7.4 52 33-85 126-179 (200)
194 TIGR00236 wecB UDP-N-acetylglu 50.3 62 0.0013 27.7 6.6 43 25-67 4-50 (365)
195 PRK00076 recR recombination pr 49.7 1.2E+02 0.0026 23.8 7.3 52 33-85 122-175 (196)
196 TIGR02638 lactal_redase lactal 49.3 1.5E+02 0.0033 25.7 8.9 83 29-115 12-100 (379)
197 PRK11557 putative DNA-binding 47.3 1.6E+02 0.0034 24.1 10.7 94 33-137 117-210 (278)
198 KOG3738 Predicted polypeptide 46.9 2.1E+02 0.0045 25.4 9.5 155 26-188 130-309 (559)
199 PF13712 Glyco_tranf_2_5: Glyc 45.8 1.5E+02 0.0033 23.5 8.8 54 78-134 34-89 (217)
200 COG0381 WecB UDP-N-acetylgluco 44.4 69 0.0015 27.9 5.7 88 23-115 5-105 (383)
201 PF02633 Creatininase: Creatin 43.9 79 0.0017 25.4 5.9 47 32-78 86-135 (237)
202 PF01762 Galactosyl_T: Galacto 43.0 1.5E+02 0.0033 22.7 9.4 19 170-188 146-164 (195)
203 COG0353 RecR Recombinational D 42.3 1.2E+02 0.0025 23.8 6.1 53 33-85 123-177 (198)
204 COG2984 ABC-type uncharacteriz 40.5 2.3E+02 0.005 24.1 11.1 96 28-129 139-239 (322)
205 PF00682 HMGL-like: HMGL-like 38.5 2E+02 0.0044 22.8 8.9 106 30-138 65-188 (237)
206 PF00056 Ldh_1_N: lactate/mala 38.4 42 0.00091 24.6 3.2 60 3-67 72-131 (141)
207 PF02641 DUF190: Uncharacteriz 38.2 61 0.0013 22.2 3.8 29 26-54 14-42 (101)
208 PRK13011 formyltetrahydrofolat 37.9 1.4E+02 0.0031 24.9 6.6 77 30-115 99-179 (286)
209 PF13506 Glyco_transf_21: Glyc 37.5 1.4E+02 0.0031 22.6 6.2 91 87-188 19-117 (175)
210 PF13727 CoA_binding_3: CoA-bi 37.2 72 0.0016 23.6 4.5 49 29-78 122-174 (175)
211 cd07943 DRE_TIM_HOA 4-hydroxy- 36.8 2.3E+02 0.005 23.1 9.7 91 36-129 89-183 (263)
212 TIGR02990 ectoine_eutA ectoine 36.7 2.3E+02 0.005 22.9 10.3 83 33-117 107-196 (239)
213 PF01713 Smr: Smr domain; Int 36.1 1.2E+02 0.0026 19.6 5.2 36 32-67 13-52 (83)
214 PRK11337 DNA-binding transcrip 36.0 2.5E+02 0.0054 23.2 10.2 93 33-136 129-221 (292)
215 PF11965 DUF3479: Domain of un 35.5 2E+02 0.0043 21.9 7.4 84 48-136 2-92 (164)
216 PF02601 Exonuc_VII_L: Exonucl 34.9 1.9E+02 0.0042 24.3 7.2 55 46-100 14-70 (319)
217 COG1570 XseA Exonuclease VII, 34.8 2.3E+02 0.0049 25.3 7.5 56 46-101 135-192 (440)
218 COG1454 EutG Alcohol dehydroge 34.7 3.2E+02 0.0068 24.0 8.8 81 30-114 13-99 (377)
219 cd07039 TPP_PYR_POX Pyrimidine 34.6 2E+02 0.0043 21.6 8.5 44 35-81 4-47 (164)
220 PRK00923 sirohydrochlorin coba 34.5 84 0.0018 22.3 4.3 23 30-52 44-66 (126)
221 COG0035 Upp Uracil phosphoribo 34.0 2.1E+02 0.0045 22.8 6.5 112 23-141 72-187 (210)
222 PF13685 Fe-ADH_2: Iron-contai 33.8 1.9E+02 0.004 23.7 6.5 123 33-160 6-131 (250)
223 PRK00286 xseA exodeoxyribonucl 33.4 2.2E+02 0.0049 25.2 7.6 55 46-100 135-191 (438)
224 COG1246 ArgA N-acetylglutamate 32.8 60 0.0013 24.3 3.2 26 30-55 83-108 (153)
225 TIGR00285 DNA-binding protein 32.7 74 0.0016 21.3 3.3 29 26-54 4-34 (87)
226 PF10087 DUF2325: Uncharacteri 32.4 1.6E+02 0.0034 19.8 8.4 75 49-132 2-78 (97)
227 cd08189 Fe-ADH5 Iron-containin 32.1 3.4E+02 0.0073 23.5 9.1 86 30-115 10-97 (374)
228 cd08190 HOT Hydroxyacid-oxoaci 31.5 3.7E+02 0.0079 23.7 9.1 81 30-114 7-93 (414)
229 cd08176 LPO Lactadehyde:propan 31.5 3.5E+02 0.0075 23.5 8.9 81 30-114 12-98 (377)
230 PRK05465 ethanolamine ammonia- 31.4 1E+02 0.0023 25.2 4.6 56 31-91 130-190 (260)
231 PRK07092 benzoylformate decarb 31.2 3.5E+02 0.0077 24.6 8.7 43 22-64 2-45 (530)
232 cd00300 LDH_like L-lactate deh 30.8 87 0.0019 26.2 4.3 60 3-67 69-128 (300)
233 cd08182 HEPD Hydroxyethylphosp 30.8 3.5E+02 0.0076 23.3 9.3 82 30-115 7-91 (367)
234 PRK04946 hypothetical protein; 30.0 1E+02 0.0023 23.8 4.2 49 21-69 93-147 (181)
235 cd05013 SIS_RpiR RpiR-like pro 29.7 2E+02 0.0043 20.1 10.5 92 34-136 3-94 (139)
236 TIGR00612 ispG_gcpE 1-hydroxy- 29.6 2.6E+02 0.0057 24.0 6.8 93 35-137 37-129 (346)
237 COG3742 Uncharacterized protei 29.3 2.2E+02 0.0048 20.5 7.2 81 29-120 48-128 (131)
238 TIGR00237 xseA exodeoxyribonuc 28.8 2.9E+02 0.0062 24.6 7.4 54 46-99 129-184 (432)
239 PF01936 NYN: NYN domain; Int 28.7 2.2E+02 0.0047 20.3 8.1 96 33-136 21-126 (146)
240 cd08188 Fe-ADH4 Iron-containin 28.5 3.9E+02 0.0085 23.1 9.1 82 30-115 12-99 (377)
241 KOG0734 AAA+-type ATPase conta 27.8 1.1E+02 0.0023 28.3 4.4 54 14-69 329-394 (752)
242 PF05673 DUF815: Protein of un 27.8 3.4E+02 0.0074 22.2 9.9 101 9-115 10-118 (249)
243 COG1581 Ssh10b Archaeal DNA-bi 27.7 1.2E+02 0.0025 20.4 3.5 33 22-54 3-37 (91)
244 PF10137 TIR-like: Predicted n 27.7 2.4E+02 0.0051 20.3 6.1 62 48-112 1-62 (125)
245 PRK15482 transcriptional regul 27.4 3.5E+02 0.0076 22.2 10.4 92 34-136 125-216 (285)
246 cd08192 Fe-ADH7 Iron-containin 27.3 4.1E+02 0.0088 22.9 9.1 82 30-115 8-95 (370)
247 PF06306 CgtA: Beta-1,4-N-acet 27.3 1.2E+02 0.0025 25.9 4.3 92 22-116 89-190 (347)
248 cd08185 Fe-ADH1 Iron-containin 27.1 4.1E+02 0.009 23.0 9.2 81 30-115 10-97 (380)
249 PHA00673 acetyltransferase dom 26.6 93 0.002 23.3 3.4 35 30-64 103-137 (154)
250 cd08551 Fe-ADH iron-containing 26.5 4.2E+02 0.0091 22.8 9.2 88 30-123 7-100 (370)
251 PRK06027 purU formyltetrahydro 26.2 3.9E+02 0.0084 22.3 8.9 77 30-115 99-179 (286)
252 cd08194 Fe-ADH6 Iron-containin 26.2 4.3E+02 0.0093 22.9 9.3 81 30-114 7-93 (375)
253 TIGR03217 4OH_2_O_val_ald 4-hy 26.0 4.2E+02 0.0091 22.7 10.7 99 36-137 91-194 (333)
254 PTZ00325 malate dehydrogenase; 26.0 1E+02 0.0022 26.3 3.9 57 2-64 78-135 (321)
255 cd05293 LDH_1 A subgroup of L- 25.9 1.1E+02 0.0024 25.9 4.1 60 3-67 74-133 (312)
256 KOG3267 Uncharacterized conser 25.8 54 0.0012 22.8 1.8 57 173-231 10-66 (138)
257 PF13380 CoA_binding_2: CoA bi 25.5 1.9E+02 0.0041 20.3 4.7 34 33-66 67-100 (116)
258 PRK08195 4-hyroxy-2-oxovalerat 25.0 4.4E+02 0.0095 22.6 10.5 98 37-137 93-195 (337)
259 PRK11382 frlB fructoselysine-6 24.8 2.5E+02 0.0055 23.9 6.2 42 14-55 10-53 (340)
260 cd03413 CbiK_C Anaerobic cobal 24.8 1.1E+02 0.0024 21.0 3.3 24 29-52 39-62 (103)
261 PRK05086 malate dehydrogenase; 24.5 1.2E+02 0.0026 25.6 4.1 58 2-64 71-128 (312)
262 cd05291 HicDH_like L-2-hydroxy 24.4 1.3E+02 0.0027 25.3 4.2 60 3-67 71-130 (306)
263 PF04123 DUF373: Domain of unk 24.4 2.9E+02 0.0062 23.9 6.3 59 33-93 85-145 (344)
264 PRK07710 acetolactate synthase 24.0 5E+02 0.011 24.0 8.3 34 31-64 16-49 (571)
265 PLN02602 lactate dehydrogenase 23.9 1.4E+02 0.003 25.8 4.4 59 3-66 108-166 (350)
266 cd03411 Ferrochelatase_N Ferro 23.9 1.1E+02 0.0023 22.9 3.4 22 31-52 98-119 (159)
267 PRK08978 acetolactate synthase 23.9 5.3E+02 0.012 23.6 8.5 31 34-64 4-34 (548)
268 PLN00135 malate dehydrogenase 23.8 2.1E+02 0.0045 24.2 5.3 60 3-67 61-121 (309)
269 PRK13505 formate--tetrahydrofo 23.7 3.7E+02 0.008 24.9 7.1 64 30-94 357-422 (557)
270 PRK08322 acetolactate synthase 23.4 5.1E+02 0.011 23.7 8.3 31 34-64 4-34 (547)
271 TIGR01771 L-LDH-NAD L-lactate 22.5 1.4E+02 0.0031 25.0 4.2 60 3-67 67-126 (299)
272 PRK10481 hypothetical protein; 22.4 4.1E+02 0.009 21.3 11.2 86 33-124 118-203 (224)
273 PF13377 Peripla_BP_3: Peripla 22.2 3E+02 0.0064 19.7 5.6 19 38-56 1-19 (160)
274 PRK05778 2-oxoglutarate ferred 22.1 4.8E+02 0.01 22.0 9.5 104 22-138 17-124 (301)
275 TIGR02406 ectoine_EctA L-2,4-d 22.0 2.8E+02 0.0062 20.3 5.4 38 30-67 84-121 (157)
276 PRK10494 hypothetical protein; 21.8 4E+02 0.0087 21.8 6.5 44 79-129 158-201 (259)
277 cd05005 SIS_PHI Hexulose-6-pho 21.7 3.6E+02 0.0077 20.3 9.9 91 30-136 19-109 (179)
278 KOG2862 Alanine-glyoxylate ami 21.7 5.2E+02 0.011 22.2 12.3 116 68-189 111-228 (385)
279 cd08186 Fe-ADH8 Iron-containin 21.7 5.4E+02 0.012 22.4 9.4 79 32-114 9-97 (383)
280 PF04028 DUF374: Domain of unk 21.6 2.3E+02 0.0051 18.2 6.0 49 55-112 20-68 (74)
281 COG5493 Uncharacterized conser 21.6 1.8E+02 0.004 22.8 4.1 50 28-77 175-227 (231)
282 PF05679 CHGN: Chondroitin N-a 21.5 6.3E+02 0.014 23.0 9.0 97 25-123 252-363 (499)
283 TIGR00962 atpA proton transloc 21.4 5.4E+02 0.012 23.5 7.7 38 30-68 173-212 (501)
284 cd03409 Chelatase_Class_II Cla 21.2 1.3E+02 0.0029 19.9 3.2 23 31-53 44-66 (101)
285 PF01501 Glyco_transf_8: Glyco 21.2 1.2E+02 0.0026 23.9 3.4 98 104-213 101-211 (250)
286 PRK13600 putative ribosomal pr 21.2 96 0.0021 20.6 2.3 51 36-87 20-70 (84)
287 COG0821 gcpE 1-hydroxy-2-methy 21.2 3.6E+02 0.0079 23.2 6.1 92 36-137 40-131 (361)
288 KOG0062 ATPase component of AB 20.8 6.8E+02 0.015 23.2 8.5 97 56-162 458-562 (582)
289 cd00477 FTHFS Formyltetrahydro 20.6 4.6E+02 0.01 24.0 7.0 68 29-97 340-409 (524)
290 PF04392 ABC_sub_bind: ABC tra 20.5 4.9E+02 0.011 21.4 8.5 96 23-124 106-206 (294)
291 TIGR01763 MalateDH_bact malate 20.3 1.8E+02 0.004 24.4 4.4 39 29-67 93-131 (305)
292 PRK00066 ldh L-lactate dehydro 20.2 1.9E+02 0.0041 24.5 4.4 60 3-67 76-135 (315)
293 cd08193 HVD 5-hydroxyvalerate 20.1 5.7E+02 0.012 22.1 9.1 82 30-115 10-97 (376)
294 PRK11858 aksA trans-homoaconit 20.0 5.9E+02 0.013 22.2 10.5 91 35-128 78-186 (378)
No 1
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.3e-50 Score=322.07 Aligned_cols=256 Identities=64% Similarity=1.047 Sum_probs=238.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHH-HHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNF-LKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~-~~~~~~~~~~~v~~~~ 79 (256)
|+||||.||.|+||+|||..+|||+.||+|+|||.|++++|.++|+++|++.++++.+++..+ .+.|...+++++++..
T Consensus 10 vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~s~ 89 (371)
T KOG1322|consen 10 VKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEILAST 89 (371)
T ss_pred eeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999998855544 4667777899999999
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
|.++.|+++.+..+.+.+-...+.+|+|++||++++.++++++++|.+++++.+++++++++++.||.+++|+++++|.+
T Consensus 90 eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vdepSkyGvv~~d~~~grV~~ 169 (371)
T KOG1322|consen 90 ETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDEPSKYGVVVIDEDTGRVIR 169 (371)
T ss_pred ccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccCccccceEEEecCCCceeE
Confidence 99999999999999998866543389999999999999999999999999999999999999999999999996699999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK 239 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~~~~~~ 239 (256)
|.|||....++.+++|+|+|+++.++.+...+.+++.+++|.+.++.+++++.++|+|+|||+|.||+.+...|++....
T Consensus 170 F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~ 249 (371)
T KOG1322|consen 170 FVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPK 249 (371)
T ss_pred ehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcc
Confidence 99999988899999999999999999998888889999999999999999999999999999999999999999999988
Q ss_pred cCCcccccCceeccCCC
Q 046608 240 NSSSKLATGSNIIGNVL 256 (256)
Q Consensus 240 ~~~~~~~~~~~~~g~~~ 256 (256)
.+..+..+.+.|.|.|+
T Consensus 250 ~t~~r~~p~~~i~~nvl 266 (371)
T KOG1322|consen 250 YTSPRLLPGSKIVGNVL 266 (371)
T ss_pred cCCccccCCccccccEe
Confidence 88889888888888764
No 2
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.3e-44 Score=281.09 Aligned_cols=242 Identities=30% Similarity=0.509 Sum_probs=214.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
||+||||||.||||.|+|...||+|+|+.+||||.|.|+.|..+|+++|.||+++. .+.+.+++.+ ++++++.+.+..
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs~~gv~itY~~ 79 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGD-GSDFGVDITYAV 79 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcC-ccccCcceEEEe
Confidence 89999999999999999999999999999999999999999999999999999984 6677777776 467799999999
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
|.++.|-++|+..+.++++++ +|++..||.++..++.++++.+.+...+++++..++++|++||++..|++ ++|..
T Consensus 80 Q~~p~GlA~Av~~a~~fv~~~---~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~-~~v~~ 155 (286)
T COG1209 80 QPEPDGLAHAVLIAEDFVGDD---DFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDED-GKVIG 155 (286)
T ss_pred cCCCCcHHHHHHHHHhhcCCC---ceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCC-CcEEE
Confidence 999999999999999999987 79999999988779999999988888899999999999999999999998 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
+.|||..++|+++.+|+|.|++++|+.+..- ...-.+++.+.++++| .+......|.|.|+||+++|++|++.+
T Consensus 156 l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i 235 (286)
T COG1209 156 LEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFV 235 (286)
T ss_pred eEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHH
Confidence 9999999999999999999999999987532 1122378999999999 566667778999999999999999988
Q ss_pred HhhhcccCCccccc
Q 046608 234 LDFLQKNSSSKLAT 247 (256)
Q Consensus 234 ~~~~~~~~~~~~~~ 247 (256)
....+++..-.+.+
T Consensus 236 ~~~~~~~G~~~~~~ 249 (286)
T COG1209 236 RTVSKRQGFKIACP 249 (286)
T ss_pred HHHHhhcCCEEeCh
Confidence 87555544333333
No 3
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.4e-43 Score=286.29 Aligned_cols=232 Identities=73% Similarity=1.221 Sum_probs=209.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+|+++++|++++..+.+.+++.++....++.+.++.+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE 80 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence 89999999999999999999999999999999999999999999999999999999999999988654445777777767
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcC-CCCeEeE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEE-TMGKVEK 159 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~-~~~~v~~ 159 (256)
..+.|+++++..++..++..+ +++++++||++++.++.++++.|.++++++++++.+..+++.|+++..++ + ++|.+
T Consensus 81 ~~~~G~~~al~~a~~~~~~~~-~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~-~~v~~ 158 (233)
T cd06425 81 TEPLGTAGPLALARDLLGDDD-EPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENT-GRIER 158 (233)
T ss_pred CCCCccHHHHHHHHHHhccCC-CCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCCccccCeEEEcCCC-CEEEE
Confidence 778999999999999997521 16999999999998999999999999999999998887788999999987 5 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
+.|||....++++++|+|+|++++|+.+.....+.+.++++.+++.+++.+++++|+|.||+||++|++|++.++
T Consensus 159 ~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 159 FVEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EEECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 999998777889999999999999999877666667789999999899999999999999999999999998764
No 4
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-43 Score=301.32 Aligned_cols=252 Identities=42% Similarity=0.703 Sum_probs=220.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.||||+|+|..+||||+|++|+|||+|+|+.|.++|++++++.+++..+.+.+++.+. ..+++++.++.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~y~~e 80 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-EGLGVRITYVVE 80 (358)
T ss_pred ceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-cccCCceEEEec
Confidence 8999999999999999999999999999999999999999999999999999999999999999874 334788888999
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
..+.||++++..+.+.+..+ +|++++||.+++.++..+++.|+.+.+.+++......++..||.+..+.+.++|.++
T Consensus 81 ~~~lGTag~l~~a~~~l~~~---~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~~~~v~~f 157 (358)
T COG1208 81 KEPLGTAGALKNALDLLGGD---DFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDPSEFGVVETDDGDGRVVEF 157 (358)
T ss_pred CCcCccHHHHHHHHHhcCCC---cEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCCCcCceEEecCCCceEEEE
Confidence 99999999999999999874 799999999999999999999998888888888888888899999988552699999
Q ss_pred eecCC--CCCCCeEEEEEEEeCHhhHHhcc-cCCCCcchhhHHHHHhcCc-EEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 046608 161 VEKPK--NFVGNKINAGIYLLNPSVLDRIE-LKPTSIEKEVFPEIAVENK-LFAMVLPGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 161 ~ek~~--~~~~~~~~~Giy~~~~~~~~~l~-~~~~~~~~~~~~~l~~~~~-v~~~~~~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
.|||. ...++++++|+|+|++++|+.+. ....+++.++++.+++.+. ++++.+.|+|+|||||+||.+|++.+++.
T Consensus 158 ~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~ 237 (358)
T COG1208 158 REKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237 (358)
T ss_pred EecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence 99994 45678999999999999999776 3456777789999999996 99999999999999999999999999864
Q ss_pred hcccCCcccccC------ceeccCCC
Q 046608 237 LQKNSSSKLATG------SNIIGNVL 256 (256)
Q Consensus 237 ~~~~~~~~~~~~------~~~~g~~~ 256 (256)
......+..+.. +.|+|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~i~gp~~ 263 (358)
T COG1208 238 DGKSPLGPIEEPVVIIRSAYIIGPVV 263 (358)
T ss_pred ccccccccccccccccccceEeCCEE
Confidence 443333333222 56677653
No 5
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=4.2e-42 Score=284.58 Aligned_cols=230 Identities=25% Similarity=0.425 Sum_probs=193.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh------------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~------------ 68 (256)
|+|||||||.||||+|+|..+||+|+||+|+|+|+|+++.+.++|+++|+|++++..+.+.+++....
T Consensus 4 mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~ 83 (297)
T TIGR01105 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcch
Confidence 89999999999999999999999999999999999999999999999999999999999999885421
Q ss_pred ---------hccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--------cchHHHHHHHHhcCCc
Q 046608 69 ---------KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGHGGE 131 (256)
Q Consensus 69 ---------~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--------~~~~~~~~~~~~~~~~ 131 (256)
.++++++.++.|.++.|+++++.+|++.++.+ +|+|+.||++++ .++.++++.|.++++.
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~---~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~ 160 (297)
T TIGR01105 84 QLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDN---PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhCCC---CEEEEECCeeccccccccchhHHHHHHHHHHHhCCc
Confidence 02356788888899999999999999999754 799999999886 3788999988767665
Q ss_pred eEEEEEecCCCcCceeEEEc----CCCC---eEeEEeecCCCC---CCCeEEEEEEEeCHhhHHhcccCC-----CCcch
Q 046608 132 ASIMVTKVDEPSKYGVVVME----ETMG---KVEKFVEKPKNF---VGNKINAGIYLLNPSVLDRIELKP-----TSIEK 196 (256)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~~~---~~~~~~~Giy~~~~~~~~~l~~~~-----~~~~~ 196 (256)
.+++....++++.||++.++ ++ + +|.++.|||..+ .++++++|+|+|++++|+.+.... .....
T Consensus 161 ~~~~~~~~~~~~~yGvv~~~~~~d~~-g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~lt 239 (297)
T TIGR01105 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEEcCCCCccceEEEecccccCC-CCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHH
Confidence 54444433578999999984 34 5 468899998643 468999999999999999885421 11235
Q ss_pred hhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 197 EVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 197 ~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
++++.+++.+++.++.++|.|+|||||++|.+|+..+.
T Consensus 240 d~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred HHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 89999999899999999999999999999999987764
No 6
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=3.6e-41 Score=275.99 Aligned_cols=229 Identities=41% Similarity=0.722 Sum_probs=199.7
Q ss_pred EEEEeCC--CCCccccCCCCCCCccceeCCcchHHHHHHHHHH-cCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 3 ALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 3 aiIlaaG--~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~-~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.+.+ +|+++|+|++++..+.+.+++.+.....++.+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 6899999 8999999999999999999999999999999999 699999999999999999999865434467777777
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCceeEEEc-CCCCe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYGVVVME-ETMGK 156 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~-~~~~~ 156 (256)
+.+..|+++++..+.+.+.....++|+|++||++++.++..+++.|.++++++++++... +++..||++..| ++ ++
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~-g~ 159 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPST-GE 159 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCC-Ce
Confidence 777899999999999998532223799999999999999999999999988899888765 457889999988 55 89
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhccc---------------------CCCCcchhhHHHHHhcCcEEEEEeCc
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL---------------------KPTSIEKEVFPEIAVENKLFAMVLPG 215 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~---------------------~~~~~~~~~~~~l~~~~~v~~~~~~~ 215 (256)
|.++.|||....++++++|+|+|++++|+.+.+ ...++..++++.+++.+++.++.++|
T Consensus 160 v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g 239 (257)
T cd06428 160 VLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDD 239 (257)
T ss_pred EEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhhhhHHhccCCEEEecCCC
Confidence 999999998777889999999999999987752 11234478999999989999999999
Q ss_pred eEEecCCHHHHHHHHHH
Q 046608 216 FWMDIGQPKDYITGLRL 232 (256)
Q Consensus 216 ~~~di~t~~d~~~a~~~ 232 (256)
+|.||+||++|.+|++.
T Consensus 240 ~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 240 FWSQIKTAGSAIYANRL 256 (257)
T ss_pred eeecCCCHHHHHhHhhc
Confidence 99999999999999875
No 7
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=2.9e-41 Score=275.38 Aligned_cols=232 Identities=39% Similarity=0.709 Sum_probs=200.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEc-cCChHHHHHHHHhhhhccCcEEEeec
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~-~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
||||||||.|+||+|+|...||+|+|++|+ |||+|+|+.+..+|++++++|+ ++..+.+.+++++.. .+++++.+..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~-~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY-KFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG-GGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc-cccccceeee
Confidence 799999999999999999999999999999 9999999999999999955555 577888999998743 3467788888
Q ss_pred cCCcCCCcHHHHHHHhhhcCCC-CCcEEEEeCCeecccchHHHHHHHHhcCC--ceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 80 ETEPLGTAGPLALARDKLIDDS-GEPFFVLNSDVISEYPLKQMIEFHRGHGG--EASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
+..+.|++++++.+++.+..+. .++|++++||++++.++..+++.|.+++. .+++...+..+++.||++.+|++ ++
T Consensus 80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~ 158 (248)
T PF00483_consen 80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDED-GR 158 (248)
T ss_dssp ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETT-SE
T ss_pred cccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccc-ee
Confidence 8888999999999999998863 12499999999999999999999998887 45666667778899999999988 89
Q ss_pred EeEEeecCCCCC-CCeEEEEEEEeCHhhHHhcc----c--CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCCHHHH
Q 046608 157 VEKFVEKPKNFV-GNKINAGIYLLNPSVLDRIE----L--KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQPKDY 226 (256)
Q Consensus 157 v~~~~ek~~~~~-~~~~~~Giy~~~~~~~~~l~----~--~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t~~d~ 226 (256)
|.++.|||.... ++++++|+|+|++++|..+. + ....+..++++.+++++ .+.++...+ +|+|||||++|
T Consensus 159 V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~ 238 (248)
T PF00483_consen 159 VIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDY 238 (248)
T ss_dssp EEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHH
T ss_pred EEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHH
Confidence 999999999776 78999999999999998872 1 23444578999999988 566778888 79999999999
Q ss_pred HHHHHHHHh
Q 046608 227 ITGLRLYLD 235 (256)
Q Consensus 227 ~~a~~~~~~ 235 (256)
++|++.+++
T Consensus 239 ~~a~~~~~~ 247 (248)
T PF00483_consen 239 LEANMDLLN 247 (248)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhc
Confidence 999998864
No 8
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=2.5e-40 Score=274.67 Aligned_cols=230 Identities=25% Similarity=0.423 Sum_probs=195.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh------------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~------------ 68 (256)
|+|||+|||.|+||+|+|..+||+|+||+|+|+|+|+++.+.++|+++|+|++++..+.+.+++....
T Consensus 4 mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~ 83 (297)
T PRK10122 4 LKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKR 83 (297)
T ss_pred eEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchh
Confidence 79999999999999999999999999999999999999999999999999999999999999885310
Q ss_pred ---------hccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--------cchHHHHHHHHhcCCc
Q 046608 69 ---------KKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGHGGE 131 (256)
Q Consensus 69 ---------~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--------~~~~~~~~~~~~~~~~ 131 (256)
...++++.++.|.++.|+++++++++++++.+ +|+|+.||++++ .++.++++.|.+++++
T Consensus 84 ~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~---~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~ 160 (297)
T PRK10122 84 QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIGDN---PFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS 160 (297)
T ss_pred hhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcCCC---CEEEEECCeeccCccccccchhHHHHHHHHHHhCCc
Confidence 01256677788888999999999999999644 799999999875 3789999999888777
Q ss_pred eEEEEEecCCCcCceeEEEc----CCCC---eEeEEeecCCCC---CCCeEEEEEEEeCHhhHHhcccC-----CCCcch
Q 046608 132 ASIMVTKVDEPSKYGVVVME----ETMG---KVEKFVEKPKNF---VGNKINAGIYLLNPSVLDRIELK-----PTSIEK 196 (256)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~----~~~~---~v~~~~ek~~~~---~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~ 196 (256)
.+++....+++..||.+.++ ++ + +|.++.|||..+ .++++++|+|+|++++|..+.+. ......
T Consensus 161 ~~~~~~~~~~~~~yGvv~~d~~~~~~-g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~lt 239 (297)
T PRK10122 161 QVLAKRMPGDLSEYSVIQTKEPLDRE-GKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLT 239 (297)
T ss_pred EEEEEECCCCCCCceEEEecCcccCC-CCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHH
Confidence 65555444578899999986 34 5 788999998643 36899999999999999988541 112235
Q ss_pred hhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 197 EVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 197 ~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
++++.+++.+++.++.++|.|+|||||++|.+|+..+.
T Consensus 240 d~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 240 DAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred HHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 88999999899999999999999999999999999883
No 9
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=2.9e-40 Score=268.08 Aligned_cols=228 Identities=28% Similarity=0.417 Sum_probs=195.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|++||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++. .+.+.+++... ..+++.+.+..
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~-~~~~~~i~~~~ 79 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDG-SDLGIRITYAV 79 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcc-cccCceEEEee
Confidence 89999999999999999999999999999999999999999999999999988764 47788888652 33467777777
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+....|+++++..+++.++.+ +++++.||+++ +.++.++++.|.++++++++++.+..++..|+.+.+|++ ++|.
T Consensus 80 ~~~~~G~~~al~~a~~~~~~~---~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 155 (240)
T cd02538 80 QPKPGGLAQAFIIGEEFIGDD---PVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYGVVEFDEN-GRVL 155 (240)
T ss_pred CCCCCCHHHHHHHHHHhcCCC---CEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCceEEecCC-CcEE
Confidence 777889999999999999754 79999999855 567999999998888888888888878888999999987 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEeC--ceEEecCCHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVLP--GFWMDIGQPKDYITGLR 231 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~~--~~~~di~t~~d~~~a~~ 231 (256)
++.|||....++++++|+|+|++++++.+..- ......++++.+++.+++.++.+. |+|+|||||++|.+|++
T Consensus 156 ~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~ 235 (240)
T cd02538 156 SIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235 (240)
T ss_pred EEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHH
Confidence 99999987777899999999999999877421 112225899999988887777766 89999999999999998
Q ss_pred HH
Q 046608 232 LY 233 (256)
Q Consensus 232 ~~ 233 (256)
.+
T Consensus 236 ~~ 237 (240)
T cd02538 236 FV 237 (240)
T ss_pred HH
Confidence 65
No 10
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=4.2e-40 Score=272.00 Aligned_cols=235 Identities=22% Similarity=0.387 Sum_probs=200.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~-~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|+|||||||.||||+|+|..+||+|+|++|+|||+|+|+.+..+|+++|++++.+ ..+.+.+++.+ ++.+++.+.+..
T Consensus 4 ~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~-g~~~g~~i~y~~ 82 (292)
T PRK15480 4 RKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGLNLQYKV 82 (292)
T ss_pred eEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC-ccccCceeEEEE
Confidence 7899999999999999999999999999999999999999999999999987654 46778888875 345678888888
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
|..+.|+++++..+.+.++.+ +++++.||+++ +.++.++++.|.+.+.++++++...++++.||++..|++ ++|.
T Consensus 83 q~~~~Gta~Al~~a~~~i~~~---~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~yGvv~~d~~-g~v~ 158 (292)
T PRK15480 83 QPSPDGLAQAFIIGEEFIGGD---DCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQN-GTAI 158 (292)
T ss_pred CCCCCCHHHHHHHHHHHhCCC---CEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCcccCcEEEECCC-CcEE
Confidence 888999999999999999754 58888999854 778999999998888889998888889999999999987 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccC------CCCcchhhHHHHHhcCcEEE-EEeCc-eEEecCCHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELK------PTSIEKEVFPEIAVENKLFA-MVLPG-FWMDIGQPKDYITGL 230 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~------~~~~~~~~~~~l~~~~~v~~-~~~~~-~~~di~t~~d~~~a~ 230 (256)
++.|||..+.++++++|+|+|++++++.+.+- ...+ .++++.+++++++.+ +...| .|+|+|||++|.+|+
T Consensus 159 ~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~i-td~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~ 237 (292)
T PRK15480 159 SLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEI-TDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEAS 237 (292)
T ss_pred EEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEh-HHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHH
Confidence 99999988888999999999999998887421 1223 688999998887644 45567 599999999999999
Q ss_pred HHHHhhhcccCC
Q 046608 231 RLYLDFLQKNSS 242 (256)
Q Consensus 231 ~~~~~~~~~~~~ 242 (256)
..+. .++.+++
T Consensus 238 ~~~~-~~~~~~g 248 (292)
T PRK15480 238 NFIA-TIEERQG 248 (292)
T ss_pred HHHH-HHHHHCC
Confidence 8775 4444444
No 11
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=4.7e-40 Score=271.41 Aligned_cols=238 Identities=23% Similarity=0.401 Sum_probs=200.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEcc-CChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAIN-YQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~-~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
||||||||.|+||+|+|..+||+|+|++|+|||+|+|+.+..+|+++|+|+++ +..+.+.+++.+ ++.+++++.+..|
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~-g~~~g~~i~~~~q 79 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD-GSQWGVNLSYAVQ 79 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc-ccccCceEEEEEc
Confidence 68999999999999999999999999999999999999999999999998885 456778888865 3456888888888
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
.++.|+++++..+++.++.+ +++++.||++ ++.++.++++.|.+.+.++++++.+.+++..||++..|++ ++|.+
T Consensus 80 ~~~~Gta~al~~a~~~l~~~---~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~-g~V~~ 155 (286)
T TIGR01207 80 PSPDGLAQAFIIGEDFIGGD---PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPERYGVVEFDSN-GRAIS 155 (286)
T ss_pred cCCCCHHHHHHHHHHHhCCC---CEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHHCceEEECCC-CeEEE
Confidence 88999999999999999764 6888899985 5778999999888888889999988889999999999987 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcCcEEEEEe-Cce-EEecCCHHHHHHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVENKLFAMVL-PGF-WMDIGQPKDYITGLRL 232 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~v~~~~~-~~~-~~di~t~~d~~~a~~~ 232 (256)
+.|||..+.++++++|+|+|++++++.+..- ......++++.+++++.+.+... .|+ |.|+|||++|.+|+..
T Consensus 156 i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~ 235 (286)
T TIGR01207 156 IEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNF 235 (286)
T ss_pred EEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHH
Confidence 9999987788899999999999998876421 11123689999999887666555 575 9999999999999765
Q ss_pred HHhhhcccCCccc
Q 046608 233 YLDFLQKNSSSKL 245 (256)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (256)
+ +.++++++-++
T Consensus 236 ~-~~~~~~~~~~~ 247 (286)
T TIGR01207 236 I-QTIEKRQGLKV 247 (286)
T ss_pred H-HHHHHhcCCEE
Confidence 5 55555555443
No 12
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4.1e-40 Score=284.17 Aligned_cols=234 Identities=29% Similarity=0.422 Sum_probs=195.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccC-------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLE------- 72 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~------- 72 (256)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|+.|.++|+++|+|++++..+.+.+++.+. ++++
T Consensus 4 m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 82 (380)
T PRK05293 4 MLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLDRINGG 82 (380)
T ss_pred EEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-CcccccCCCCC
Confidence 8999999999999999999999999999999 899999999999999999999999999999998642 2222
Q ss_pred cEEE--eeccCC---cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCc
Q 046608 73 IKIT--CSQETE---PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKY 145 (256)
Q Consensus 73 ~~v~--~~~~~~---~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~ 145 (256)
+.+. +..+.+ +.|++++++.+++.+....+++|+|++||++++.++.++++.|.++++++++++... +++..|
T Consensus 83 ~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~y 162 (380)
T PRK05293 83 VTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRF 162 (380)
T ss_pred EEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhcccc
Confidence 3333 333332 489999999999999642222799999999999999999999988888887776544 467889
Q ss_pred eeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhc-cc------CCCCcchhhHHHHHhcC-cEEEEEeCceE
Q 046608 146 GVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-EL------KPTSIEKEVFPEIAVEN-KLFAMVLPGFW 217 (256)
Q Consensus 146 ~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l-~~------~~~~~~~~~~~~l~~~~-~v~~~~~~~~~ 217 (256)
|.+..|++ ++|.++.|||....++++++|+|+|++++|..+ .+ ...++..++++.+++.+ ++.++..+++|
T Consensus 163 G~v~~d~~-g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~g~w 241 (380)
T PRK05293 163 GIMNTDEN-MRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYW 241 (380)
T ss_pred CEEEECCC-CcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEeCCEE
Confidence 99999887 899999999976667899999999999988543 21 12345568999988775 79999999999
Q ss_pred EecCCHHHHHHHHHHHHhh
Q 046608 218 MDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 218 ~di~t~~d~~~a~~~~~~~ 236 (256)
.|+|||++|++|+..++..
T Consensus 242 ~digt~~~~~~a~~~~l~~ 260 (380)
T PRK05293 242 KDVGTIESLWEANMELLRP 260 (380)
T ss_pred EeCCCHHHHHHHHHHHcCC
Confidence 9999999999999887754
No 13
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2e-39 Score=277.23 Aligned_cols=248 Identities=33% Similarity=0.507 Sum_probs=207.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccC-ChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINY-QPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~-~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
||||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.+++++++++++++ ..+.+.+++.+. ..+++.+.+..+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 79 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG-ERFGAKITYIVQ 79 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc-cccCceEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999 888999998752 334666666667
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
..+.|++++++.+++.++.+ +|++++||++++.++.++++.|.++++++++++.+..++..|+.+..+++ ++|.++
T Consensus 80 ~~~~G~~~al~~a~~~l~~~---~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~~~~~g~~~~~~~-~~v~~~ 155 (353)
T TIGR01208 80 GEPLGLAHAVYTARDFLGDD---DFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTAFGVAVLEDG-KRILKL 155 (353)
T ss_pred CCCCCHHHHHHHHHHhcCCC---CEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCChhhCeEEEEcCC-CcEEEE
Confidence 77899999999999999654 69999999999989999999999888898988888778888998888765 789999
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 161 VEKPKNFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 161 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
.|||....++++++|+|+|++.+++.+... ......++++.+++.+ ++.++.++|+|.|||||+||++|++.++
T Consensus 156 ~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll 235 (353)
T TIGR01208 156 VEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLIL 235 (353)
T ss_pred EECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHH
Confidence 999987777899999999999888877421 1122368899998887 7999999999999999999999999999
Q ss_pred hhhcccCCcccccCceeccCC
Q 046608 235 DFLQKNSSSKLATGSNIIGNV 255 (256)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~g~~ 255 (256)
+.....-.+ +.+++.+.|||
T Consensus 236 ~~~~~~~~~-i~~~~~i~~~~ 255 (353)
T TIGR01208 236 DEVEREVQG-VDDESKIRGRV 255 (353)
T ss_pred hhcccccCC-cCCCCEEcCCE
Confidence 864322111 34444444443
No 14
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=3.9e-39 Score=263.01 Aligned_cols=226 Identities=31% Similarity=0.525 Sum_probs=194.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc-cCcEE-----
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIKI----- 75 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~-~~~~v----- 75 (256)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++..+.+.+++.+.... .++.+
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 689999999999999999999999999999999999999999999999999999999999998754210 02222
Q ss_pred --------------EeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCC
Q 046608 76 --------------TCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDE 141 (256)
Q Consensus 76 --------------~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (256)
.+..+.++.|+++++..+++.++.+ +|++++||++++.++.++++.|.+++++++++.. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e---~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~ 155 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLDDE---AFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QP 155 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcCCC---eEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cC
Confidence 2233446689999999999999743 7999999999999999999999998888887654 46
Q ss_pred CcCceeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecC
Q 046608 142 PSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIG 221 (256)
Q Consensus 142 ~~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~ 221 (256)
+..||.+..|+ ++|+++.|||... ++++++|+|+|++++|+.+.....++..++++.++..+++.++.++|+|.|||
T Consensus 156 ~~~yG~v~~d~--~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIg 232 (254)
T TIGR02623 156 PGRFGALDLEG--EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMD 232 (254)
T ss_pred CCcccEEEECC--CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCC
Confidence 67899998874 6899999998543 57999999999999998887666677789999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 046608 222 QPKDYITGLRLYLD 235 (256)
Q Consensus 222 t~~d~~~a~~~~~~ 235 (256)
||++|.+|+..+.+
T Consensus 233 t~~~~~~~~~~~~~ 246 (254)
T TIGR02623 233 TLRDKNYLEELWES 246 (254)
T ss_pred chHHHHHHHHHHHc
Confidence 99999999887644
No 15
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=1.5e-38 Score=257.55 Aligned_cols=229 Identities=32% Similarity=0.558 Sum_probs=198.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|++++++++++..+.+.+++.+.. .+++.+.++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~-~~~~~i~~~~~ 79 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS-RFGVRITYILQ 79 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh-hcCCeEEEEEC
Confidence 89999999999999999999999999999999999999999999999999999999899999887632 34566776677
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
....|+++++..++..+..+ ++++++||++++.++.++++.|..++.++++++.+..++..|+++..++ ++|.++
T Consensus 80 ~~~~g~~~sl~~a~~~i~~~---~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~ 154 (236)
T cd04189 80 EEPLGLAHAVLAARDFLGDE---PFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRRFGVAVVDD--GRIVRL 154 (236)
T ss_pred CCCCChHHHHHHHHHhcCCC---CEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCCcccceEEEEcC--CeEEEE
Confidence 77889999999999998743 6999999999999999999998888888888888877778899888774 689999
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHHhcccCC-----CCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 161 VEKPKNFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 161 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~-----~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
.+||....+.++++|+|+|++++++.+.... .....++++.+++.+ ++.++.++++|+|||||+||.+|++.++
T Consensus 155 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l 234 (236)
T cd04189 155 VEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLL 234 (236)
T ss_pred EECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHH
Confidence 9998766677999999999999988774211 112258899998776 6999999999999999999999999887
Q ss_pred h
Q 046608 235 D 235 (256)
Q Consensus 235 ~ 235 (256)
+
T Consensus 235 ~ 235 (236)
T cd04189 235 D 235 (236)
T ss_pred h
Confidence 5
No 16
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=1.6e-38 Score=255.01 Aligned_cols=222 Identities=34% Similarity=0.615 Sum_probs=194.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++++++++|++++..+.+.+++.+.. .++..+.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-RGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-ccCceEEEEECCC
Confidence 699999999999999999999999999999999999999999999999999998888888887422 1245565666667
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEEee
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE 162 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e 162 (256)
..|+++++..+++.+..+ +|++++||++++.++.++++.+...+.++++++.+..++..++.+.++++ ++|..+.+
T Consensus 80 ~~G~~~~l~~a~~~~~~~---~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (223)
T cd06915 80 PLGTGGAIKNALPKLPED---QFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTVDGD-GRVIAFVE 155 (223)
T ss_pred CCcchHHHHHHHhhcCCC---CEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEECCC-CeEEEEEe
Confidence 899999999999999544 79999999999888999999888888888888888777788999999887 89999999
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHH
Q 046608 163 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITG 229 (256)
Q Consensus 163 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a 229 (256)
|+....+.++++|+|+|++++++.+.....+++.++++.++..+++.++++++.|+|||||+||..|
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 156 KGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred CCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 9876567799999999999999988655556677899999988899999999999999999999987
No 17
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=6.9e-39 Score=278.14 Aligned_cols=235 Identities=22% Similarity=0.417 Sum_probs=194.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCc--E-EE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEI--K-IT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~--~-v~ 76 (256)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+|+.|.++|+++|++++++..+.+.+++.......+. . +.
T Consensus 6 ~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK00844 6 VLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGLLGNYIT 85 (407)
T ss_pred eEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCccccCCCeEE
Confidence 6899999999999999999999999999998 999999999999999999999999999999999642111111 1 21
Q ss_pred eeccC------CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCceeE
Q 046608 77 CSQET------EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYGVV 148 (256)
Q Consensus 77 ~~~~~------~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v 148 (256)
..++. ...|+++++..+++.+..+..++|+|++||++++.++.+++++|.++++++++++... +++..||.+
T Consensus 86 ~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv 165 (407)
T PRK00844 86 PVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVI 165 (407)
T ss_pred ECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEE
Confidence 11211 1589999999999999654323699999999999999999999999988888877653 467889999
Q ss_pred EEcCCCCeEeEEeecCCCCC-------CCeEEEEEEEeCHhhH-Hhccc------CCCCcchhhHHHHHhcCcEEEEEe-
Q 046608 149 VMEETMGKVEKFVEKPKNFV-------GNKINAGIYLLNPSVL-DRIEL------KPTSIEKEVFPEIAVENKLFAMVL- 213 (256)
Q Consensus 149 ~~~~~~~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~~-~~l~~------~~~~~~~~~~~~l~~~~~v~~~~~- 213 (256)
..|++ ++|.++.|||.... +.++++|+|+|++++| +.+.+ +..++..++++.+++.+.+.++.+
T Consensus 166 ~~d~~-g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~ 244 (407)
T PRK00844 166 EVDPD-GRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFS 244 (407)
T ss_pred EECCC-CCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcc
Confidence 99987 89999999986432 4699999999999996 44542 335566799999999888988865
Q ss_pred -----------CceEEecCCHHHHHHHHHHHHhh
Q 046608 214 -----------PGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 214 -----------~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
.|+|.||+||++|++|++.+++.
T Consensus 245 ~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~ 278 (407)
T PRK00844 245 TNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSV 278 (407)
T ss_pred cccccccccCCCCEEEECCCHHHHHHHHHHHhCC
Confidence 58999999999999999999864
No 18
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.2e-38 Score=254.01 Aligned_cols=218 Identities=28% Similarity=0.465 Sum_probs=189.4
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|++++++..+.+.+++.+ +.+++.+.+..+.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~~~ 78 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISDEP 78 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999876 2346777777666
Q ss_pred -CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHH--hcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 82 -EPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR--GHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 82 -~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+..|+++++..+++.++.+ +|++++||++++.++.++++.|. ..+..+++...+.++...++.+..+++ ++|.
T Consensus 79 ~~~~g~~~~l~~~~~~~~~~---~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~-~~v~ 154 (221)
T cd06422 79 DELLETGGGIKKALPLLGDE---PFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVGDFSLDAD-GRLR 154 (221)
T ss_pred CcccccHHHHHHHHHhcCCC---CEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcceEEECCC-CcEe
Confidence 6789999999999999654 79999999999999999999887 455566666666666788999999987 8999
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITG 229 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a 229 (256)
.+.+||.. +++++|+|+|+++++..+.+... ...++++.+++.+++.++.+.|+|.|||||+||.+|
T Consensus 155 ~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~~~-~~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 155 RGGGGAVA---PFTFTGIQILSPELFAGIPPGKF-SLNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred ecccCCCC---ceEEEEEEEEcHHHHhhCCcCcc-cHHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99888753 68999999999999998875533 336899999988899999999999999999999875
No 19
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=5.9e-38 Score=260.82 Aligned_cols=230 Identities=25% Similarity=0.324 Sum_probs=193.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh-------c---
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK-------K--- 70 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~-------~--- 70 (256)
|++||+|||.|+||+|+|..+||+|+|++|+|+|+|+++.+.++|+++|+|++++..+.+.+++..... +
T Consensus 9 ~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 88 (302)
T PRK13389 9 KKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88 (302)
T ss_pred eEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence 789999999999999999999999999999999999999999999999999999999999999964210 0
Q ss_pred -----------cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc--------cchHHHHHHHHhcCCc
Q 046608 71 -----------LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE--------YPLKQMIEFHRGHGGE 131 (256)
Q Consensus 71 -----------~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~--------~~~~~~~~~~~~~~~~ 131 (256)
.+..+.+..|....|+++++..+.+.+.++ +|+|+.||++++ .++.++++.|.+.+++
T Consensus 89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~---~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~ 165 (302)
T PRK13389 89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDE---PVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS 165 (302)
T ss_pred HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcCCC---CEEEEeCcceecccccccccccHHHHHHHHHhcCCC
Confidence 023455566677899999999999998644 799999999874 6799999999877765
Q ss_pred eEEEEEecCCCcCceeEEEcC------CCCeEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhh
Q 046608 132 ASIMVTKVDEPSKYGVVVMEE------TMGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEV 198 (256)
Q Consensus 132 ~~i~~~~~~~~~~~~~v~~~~------~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~ 198 (256)
++++.+.+++..||++..++ +.++|.++.|||. ...++++++|+|+|++++++.+... ...+..++
T Consensus 166 -tl~~~~~~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~ 244 (302)
T PRK13389 166 -QIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDA 244 (302)
T ss_pred -EEEEEEcccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHH
Confidence 67777777888999998863 1157999999997 3457899999999999999887432 12234689
Q ss_pred HHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 199 FPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 199 ~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
++.+++++++.++.+.|+|+|||||++|++|+..+.
T Consensus 245 i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred HHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 999999889999999999999999999999988764
No 20
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=1.8e-37 Score=253.56 Aligned_cols=225 Identities=30% Similarity=0.543 Sum_probs=190.6
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc-cCcEEEe----
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-LEIKITC---- 77 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~-~~~~v~~---- 77 (256)
|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+..+|+++|+|++++..+.+.+++.+.... .++.+.+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999764311 1122211
Q ss_pred ---ec------------cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCC
Q 046608 78 ---SQ------------ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEP 142 (256)
Q Consensus 78 ---~~------------~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 142 (256)
.. +....|++++++++++.++.++ +|++++||++++.++.++++.|..++++++++... .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~--~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--~~ 156 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDE--TFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--PP 156 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHHHHHHhcCCCC--eEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--CC
Confidence 11 1235678999999999996521 79999999999999999999998888888876653 46
Q ss_pred cCceeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCC
Q 046608 143 SKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQ 222 (256)
Q Consensus 143 ~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t 222 (256)
..|+.+.+|++ ++|..+.|||... +..+++|+|++++++++.+.+....+..++++.+++.+++.++.++|+|.||||
T Consensus 157 ~~~g~v~~d~~-g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t 234 (253)
T cd02524 157 GRFGELDLDDD-GQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDT 234 (253)
T ss_pred CcccEEEECCC-CCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcC
Confidence 77899999988 8999999998644 468999999999999998876555555789999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 046608 223 PKDYITGLRLY 233 (256)
Q Consensus 223 ~~d~~~a~~~~ 233 (256)
++||.+|++.+
T Consensus 235 ~~~~~~~~~~~ 245 (253)
T cd02524 235 LRDKQTLEELW 245 (253)
T ss_pred HHHHHHHHHHH
Confidence 99999998766
No 21
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=1.8e-37 Score=255.61 Aligned_cols=230 Identities=29% Similarity=0.428 Sum_probs=189.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh------c----
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK------K---- 70 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~------~---- 70 (256)
|++||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.+... +
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence 899999999999999999999999999999999999999999999999999999999999888853210 0
Q ss_pred ----------cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeeccc---chHHHHHHHHhcCCceEEEEE
Q 046608 71 ----------LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 71 ----------~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~i~~~ 137 (256)
.++.+.+..+..+.|+++++..+++.++.+ +|+|++||+++.. ++.++++.|.+.+++. +++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~---~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 156 (267)
T cd02541 81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDE---PFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVE 156 (267)
T ss_pred HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhCCC---ceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEE
Confidence 134566666777899999999999999754 7999999997653 4899999888766653 4443
Q ss_pred ec--CCCcCceeEEEcCC---CCeEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccC-----CCCcchhhHHHHHhc
Q 046608 138 KV--DEPSKYGVVVMEET---MGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELK-----PTSIEKEVFPEIAVE 205 (256)
Q Consensus 138 ~~--~~~~~~~~v~~~~~---~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~-----~~~~~~~~~~~l~~~ 205 (256)
.. +++..||++..|++ .++|.++.|||. ...+.++++|+|+|++++|..+... ......++++.+++.
T Consensus 157 ~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~ 236 (267)
T cd02541 157 EVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEE 236 (267)
T ss_pred EcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhc
Confidence 33 35688999998851 258999999986 3456799999999999999988542 112235889999988
Q ss_pred CcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 206 NKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 206 ~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
+++.++.++|+|.|||||++|.+|+..+.
T Consensus 237 ~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 237 EPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred CCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 89999999999999999999999998763
No 22
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.2e-37 Score=267.65 Aligned_cols=233 Identities=24% Similarity=0.404 Sum_probs=193.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh--cc--C-cE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK--KL--E-IK 74 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~--~~--~-~~ 74 (256)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+|+.+.++|+++|+|++++..+.+.+++.+... .+ + +.
T Consensus 4 ~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~~ 83 (429)
T PRK02862 4 VLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFVE 83 (429)
T ss_pred EEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEEE
Confidence 5799999999999999999999999999999 99999999999999999999999999999999974210 00 1 22
Q ss_pred EEeeccCC-----cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCcee
Q 046608 75 ITCSQETE-----PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYGV 147 (256)
Q Consensus 75 v~~~~~~~-----~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~ 147 (256)
+....+.. ..|+++++..+++.+...+.++|+|++||++++.++.++++.|.+.++++++++.+. +++..||+
T Consensus 84 i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~ 163 (429)
T PRK02862 84 VLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGL 163 (429)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceE
Confidence 22222211 279999999999999643223799999999999899999999998888888888655 45788999
Q ss_pred EEEcCCCCeEeEEeecCCCC---------------------CCCeEEEEEEEeCHhhHHhc-cc--CCCCcchhhHHHHH
Q 046608 148 VVMEETMGKVEKFVEKPKNF---------------------VGNKINAGIYLLNPSVLDRI-EL--KPTSIEKEVFPEIA 203 (256)
Q Consensus 148 v~~~~~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~l-~~--~~~~~~~~~~~~l~ 203 (256)
+..|++ ++|..+.|||... ...++++|+|+|++++|..+ .. ...++..++++.++
T Consensus 164 i~~d~~-g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~ 242 (429)
T PRK02862 164 MKTDDD-GRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAI 242 (429)
T ss_pred EEECCC-CcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHh
Confidence 999987 8999999998632 12488999999999998654 33 23455578999998
Q ss_pred hcCcEEEEEeCceEEecCCHHHHHHHHHHHH
Q 046608 204 VENKLFAMVLPGFWMDIGQPKDYITGLRLYL 234 (256)
Q Consensus 204 ~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~ 234 (256)
+.+++.++.++|+|.|+|||++|++|++.++
T Consensus 243 ~~~~v~~~~~~g~w~digt~~~y~~an~~l~ 273 (429)
T PRK02862 243 RDYKVQSYLFDGYWEDIGTIEAFYEANLALT 273 (429)
T ss_pred ccCcEEEEEeCCEEEeCCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999987
No 23
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.7e-37 Score=267.14 Aligned_cols=234 Identities=25% Similarity=0.377 Sum_probs=194.0
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcc-hHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh----ccCcEE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKP-MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----KLEIKI 75 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~p-li~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~----~~~~~v 75 (256)
|+|||||||.|+||+|+|..+||+|+|++|+| ||+|+++.+.++|+++|+|++++..+.+.+++.+... ..+..+
T Consensus 16 ~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~i 95 (425)
T PRK00725 16 TLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFREELGEFV 95 (425)
T ss_pred eEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccccCCCCeE
Confidence 47999999999999999999999999999997 9999999999999999999999999999999975211 001112
Q ss_pred Eee-------ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCce
Q 046608 76 TCS-------QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYG 146 (256)
Q Consensus 76 ~~~-------~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~ 146 (256)
.+. .+..+.|++++++.+++.+....+++|+|++||++++.++.++++.|..+++++++++... +++..||
T Consensus 96 ~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG 175 (425)
T PRK00725 96 DLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFG 175 (425)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccce
Confidence 111 1223589999999999999743223799999999999999999999999999888887665 5678999
Q ss_pred eEEEcCCCCeEeEEeecCCCC-------CCCeEEEEEEEeCHhhHH-hccc------CCCCcchhhHHHHHhcCcEEEEE
Q 046608 147 VVVMEETMGKVEKFVEKPKNF-------VGNKINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAVENKLFAMV 212 (256)
Q Consensus 147 ~v~~~~~~~~v~~~~ek~~~~-------~~~~~~~Giy~~~~~~~~-~l~~------~~~~~~~~~~~~l~~~~~v~~~~ 212 (256)
++..|++ ++|.++.|||... .+.++++|+|+|++++|. .+.+ ...++..++++.+++.+++.++.
T Consensus 176 ~v~~d~~-~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~ 254 (425)
T PRK00725 176 VMAVDEN-DRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHP 254 (425)
T ss_pred EEEECCC-CCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEE
Confidence 9999987 8999999998643 246999999999999865 4432 22456679999999989999998
Q ss_pred eC-----------ceEEecCCHHHHHHHHHHHHh
Q 046608 213 LP-----------GFWMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 213 ~~-----------~~~~di~t~~d~~~a~~~~~~ 235 (256)
+. ++|.|||||++|++|++.+++
T Consensus 255 ~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~ 288 (425)
T PRK00725 255 FSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLAS 288 (425)
T ss_pred ecCCccccccccCCeEEECCCHHHHHHHHHHHcC
Confidence 85 599999999999999999875
No 24
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=7.1e-37 Score=251.12 Aligned_cols=225 Identities=27% Similarity=0.406 Sum_probs=184.2
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh-----------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----------- 69 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~----------- 69 (256)
|+|||||||.|+||+|+|..+||+|+|++|+|||+|+++.+.++|+++++|++++..+.+.+++.+...
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE 80 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence 899999999999999999999999999999999999999999999999999999999999998863100
Q ss_pred ----c-----cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeeccc---chHHHHHHHHhcCCceEEEEE
Q 046608 70 ----K-----LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 70 ----~-----~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~i~~~ 137 (256)
. ....+.+..+....|+++++..+++.++.+ +|++++||+++.. ++.+++++|.+++++. +++.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~---~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~ 156 (260)
T TIGR01099 81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVGDE---PFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVE 156 (260)
T ss_pred HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhCCC---CEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEE
Confidence 0 013455566667899999999999999544 7999999997653 6999999998888765 3333
Q ss_pred ec--CCCcCceeEEEcC---CCCeEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccCC-----CCcchhhHHHHHhc
Q 046608 138 KV--DEPSKYGVVVMEE---TMGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKP-----TSIEKEVFPEIAVE 205 (256)
Q Consensus 138 ~~--~~~~~~~~v~~~~---~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~-----~~~~~~~~~~l~~~ 205 (256)
.. +++..||++..+. +.++|+++.|||. ...++++++|+|+|++++|..+.... .....++++.+++.
T Consensus 157 ~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~ 236 (260)
T TIGR01099 157 EVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEK 236 (260)
T ss_pred ECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhc
Confidence 33 3568899998862 2268999999985 23467899999999999999884321 12235789999988
Q ss_pred CcEEEEEeCceEEecCCHHHHHHH
Q 046608 206 NKLFAMVLPGFWMDIGQPKDYITG 229 (256)
Q Consensus 206 ~~v~~~~~~~~~~di~t~~d~~~a 229 (256)
+++.++.++|+|.|||||++|++|
T Consensus 237 ~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 237 ETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred CCEEEEEcceEEEeCCCHHHHhhC
Confidence 999999999999999999999875
No 25
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.6e-36 Score=243.09 Aligned_cols=219 Identities=33% Similarity=0.647 Sum_probs=186.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||+|+|...||+|+|++|+|||+|+++.+..+++++++|++++..+.+.+++.+. ..+++.+.++.+..
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEECCC
Confidence 68999999999999999999999999999999999999999999999999999888888888653 22355666666666
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEEee
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE 162 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e 162 (256)
+.|+++++..+.+.. .+ +|+|++||++++.++.++++.+..++.++++++........|+++..++ ++|.++.|
T Consensus 80 ~~g~~~~l~~~~~~~-~~---~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~--~~v~~~~e 153 (220)
T cd06426 80 PLGTAGALSLLPEKP-TD---PFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVVETEG--GRITSIEE 153 (220)
T ss_pred CCcchHHHHHHHhhC-CC---CEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEECC--CEEEEEEE
Confidence 789999988776655 22 7999999999988999999999888888888887765667799988874 79999999
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 163 KPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 163 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
||.. +.++++|+|+|++++++.+.++......++++.+++.+ ++.+++++|+|.|||||+||.+|+
T Consensus 154 k~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 154 KPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred CCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 8863 46899999999999999887654433468899998876 699999999999999999999884
No 26
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.3e-38 Score=258.97 Aligned_cols=233 Identities=27% Similarity=0.445 Sum_probs=202.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh----cc--CcE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK----KL--EIK 74 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~----~~--~~~ 74 (256)
-|+|||+|.|+||.|||+.++||-+||||+ +||++.|.+|.++|+.+|.|++.++...+.+|++...+ +. ++.
T Consensus 7 laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~v~ 86 (393)
T COG0448 7 LAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGGVF 86 (393)
T ss_pred EEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccCcEE
Confidence 489999999999999999999999999987 79999999999999999999999999999999986321 11 233
Q ss_pred EEeec-----cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcCcee
Q 046608 75 ITCSQ-----ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGV 147 (256)
Q Consensus 75 v~~~~-----~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~ 147 (256)
+.... +....|+++++++-+..+...+.++++++.||++|.-|+..+++.|.+.++++|+++.+++ +++.+|+
T Consensus 87 ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGi 166 (393)
T COG0448 87 ILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGV 166 (393)
T ss_pred EeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCc
Confidence 32211 1135789999999999998766679999999999999999999999999999999999885 5789999
Q ss_pred EEEcCCCCeEeEEeecCCC-CCCC-eEEEEEEEeCHhhHHhccc-------CCCCcchhhHHHHHhcCcEEEEEeCceEE
Q 046608 148 VVMEETMGKVEKFVEKPKN-FVGN-KINAGIYLLNPSVLDRIEL-------KPTSIEKEVFPEIAVENKLFAMVLPGFWM 218 (256)
Q Consensus 148 v~~~~~~~~v~~~~ek~~~-~~~~-~~~~Giy~~~~~~~~~l~~-------~~~~~~~~~~~~l~~~~~v~~~~~~~~~~ 218 (256)
+.+|++ ++|++|.|||.. +.++ ++++|+|+|+++.|..+.+ ...+|..++++.+++.+.+++|+++|||.
T Consensus 167 m~~D~~-~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~ 245 (393)
T COG0448 167 MNVDEN-GRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWR 245 (393)
T ss_pred eEECCC-CCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhh
Confidence 999999 999999999987 4444 8999999999999886632 23567789999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHh
Q 046608 219 DIGQPKDYITGLRLYLD 235 (256)
Q Consensus 219 di~t~~d~~~a~~~~~~ 235 (256)
||||.+.|++|+..+++
T Consensus 246 dVgTi~syy~aNmdLl~ 262 (393)
T COG0448 246 DVGTIDSYYEANMDLLS 262 (393)
T ss_pred hcccHHHHHHhhHHhcC
Confidence 99999999999999976
No 27
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=8.6e-37 Score=266.98 Aligned_cols=235 Identities=24% Similarity=0.369 Sum_probs=195.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh---c-----c
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK---K-----L 71 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~---~-----~ 71 (256)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+|+.+.++|++++++++++..+.+.+++.+... . .
T Consensus 4 ~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 83 (436)
T PLN02241 4 VAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFGDG 83 (436)
T ss_pred eEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccCCC
Confidence 7899999999999999999999999999996 99999999999999999999999999999999975210 0 0
Q ss_pred CcEEEeeccC-----CcCCCcHHHHHHHhhhcCCC---CCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--C
Q 046608 72 EIKITCSQET-----EPLGTAGPLALARDKLIDDS---GEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--E 141 (256)
Q Consensus 72 ~~~v~~~~~~-----~~~g~~~s~~~~~~~i~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 141 (256)
++.+.+..+. .+.|+++++..++..+.... .++|++++||++++.++.++++.|.++++++++++.+.. +
T Consensus 84 ~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~ 163 (436)
T PLN02241 84 FVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESR 163 (436)
T ss_pred CEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhh
Confidence 1333333232 36899999999887775321 127999999999999999999999999999998887764 4
Q ss_pred CcCceeEEEcCCCCeEeEEeecCCCCC---------------------CCeEEEEEEEeCHhhHHhc-cc---CCCCcch
Q 046608 142 PSKYGVVVMEETMGKVEKFVEKPKNFV---------------------GNKINAGIYLLNPSVLDRI-EL---KPTSIEK 196 (256)
Q Consensus 142 ~~~~~~v~~~~~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~---~~~~~~~ 196 (256)
++.|+++..|++ ++|.++.|||.... .+++++|+|+|++++|..+ .. ....+..
T Consensus 164 ~~~ygvv~~d~~-~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~ 242 (436)
T PLN02241 164 ASDFGLMKIDDT-GRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGS 242 (436)
T ss_pred cCcceEEEECCC-CCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhH
Confidence 688999999887 89999999986432 3699999999999998654 21 1235567
Q ss_pred hhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHHhh
Q 046608 197 EVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 197 ~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~~~ 236 (256)
++++.++..+ +++++.++|+|.||++|++|++|++.++..
T Consensus 243 dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~ 283 (436)
T PLN02241 243 EIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQ 283 (436)
T ss_pred HHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcC
Confidence 8999999885 899999999999999999999999999864
No 28
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.2e-36 Score=261.07 Aligned_cols=233 Identities=25% Similarity=0.405 Sum_probs=190.9
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc-----cCcEEE
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-----LEIKIT 76 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~-----~~~~v~ 76 (256)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++.+.++|+++|+|++++..+.+.+++.+.... ..+++.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTLL 80 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEEEe
Confidence 69999999999999999999999999999 899999999999999999999999999999998742110 012222
Q ss_pred e-----eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEec--CCCcCceeEE
Q 046608 77 C-----SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKV--DEPSKYGVVV 149 (256)
Q Consensus 77 ~-----~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~ 149 (256)
. ..+....|+++++..++..+.....++|++++||++++.++.++++.|..++.++++++.+. .++..|+++.
T Consensus 81 ~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~ 160 (361)
T TIGR02091 81 PAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQ 160 (361)
T ss_pred CCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEE
Confidence 1 11122579999999999998643223799999999999999999999988887788777655 3567899999
Q ss_pred EcCCCCeEeEEeecCCCCCCC-------eEEEEEEEeCHhhHH-hccc------CCCCcchhhHHHHHhcCcEEEEEeCc
Q 046608 150 MEETMGKVEKFVEKPKNFVGN-------KINAGIYLLNPSVLD-RIEL------KPTSIEKEVFPEIAVENKLFAMVLPG 215 (256)
Q Consensus 150 ~~~~~~~v~~~~ek~~~~~~~-------~~~~Giy~~~~~~~~-~l~~------~~~~~~~~~~~~l~~~~~v~~~~~~~ 215 (256)
+|++ ++|..+.|||....+. ++++|+|+|+++++. .+.+ ...++..++++.+++++++.++.+++
T Consensus 161 ~d~~-~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~ 239 (361)
T TIGR02091 161 VDED-GRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSG 239 (361)
T ss_pred ECCC-CCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCC
Confidence 9887 8999999998655444 899999999999874 4332 12345568999999989999999999
Q ss_pred eEEecCCHHHHHHHHHHHHhh
Q 046608 216 FWMDIGQPKDYITGLRLYLDF 236 (256)
Q Consensus 216 ~~~di~t~~d~~~a~~~~~~~ 236 (256)
+|.|||||++|++|+..+++.
T Consensus 240 ~w~digt~~~~~~a~~~~l~~ 260 (361)
T TIGR02091 240 YWRDVGTIDSFWEANMDLVSV 260 (361)
T ss_pred EEEECCCHHHHHHHHHHHhCC
Confidence 999999999999999998864
No 29
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=4.5e-37 Score=264.23 Aligned_cols=235 Identities=20% Similarity=0.295 Sum_probs=183.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChH-HHHHHHHhhhhccCcEE---
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKI--- 75 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v--- 75 (256)
|+|||||+|.|+||+|+|..+||||+|++|+ |||+|+++.|.++|+++|++++++..+ .+.+++.+. ..++++.
T Consensus 3 ~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~~~~~~~ 81 (369)
T TIGR02092 3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSG-REWDLHRKRD 81 (369)
T ss_pred EEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCC-CCCCcccccC
Confidence 7899999999999999999999999999999 999999999999999999999999876 999999752 2233331
Q ss_pred ---EeeccC-Cc--CCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcCce-
Q 046608 76 ---TCSQET-EP--LGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYG- 146 (256)
Q Consensus 76 ---~~~~~~-~~--~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~- 146 (256)
.+..+. .. .|++.++..+++.+....+++|+|++||++++.++.++++.|.++++++++++.+.+ ++..|+
T Consensus 82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~ 161 (369)
T TIGR02092 82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDT 161 (369)
T ss_pred cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCc
Confidence 222222 23 356667888888885221127999999999999999999999998898988887765 567775
Q ss_pred eEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhc-c----cCCCCcchhhHHHHHhcCcEEEEEeCceEEecC
Q 046608 147 VVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-E----LKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIG 221 (256)
Q Consensus 147 ~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l-~----~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~ 221 (256)
.+..+++ ++|..+.+++.......+++|+|+|+++.+..+ . ........++++.+++++++.++..+++|.|||
T Consensus 162 vv~~~~~-g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIg 240 (369)
T TIGR02092 162 ILRFDES-GKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAYEYTGYLANIN 240 (369)
T ss_pred EEEEcCC-CCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEEecCCceeEcC
Confidence 4556665 788777554433334578999999999876433 2 222223357888888777899999999999999
Q ss_pred CHHHHHHHHHHHHhhh
Q 046608 222 QPKDYITGLRLYLDFL 237 (256)
Q Consensus 222 t~~d~~~a~~~~~~~~ 237 (256)
||++|.+|++.+++..
T Consensus 241 t~~~l~~a~~~~l~~~ 256 (369)
T TIGR02092 241 SVKSYYKANMDLLDPQ 256 (369)
T ss_pred CHHHHHHHHHHHhCCc
Confidence 9999999998887643
No 30
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=5.5e-36 Score=239.36 Aligned_cols=214 Identities=40% Similarity=0.716 Sum_probs=188.8
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++.+.. .++..+.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-KFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-hcCceEEEEeCCC
Confidence 689999999999999999999999999999999999999999999999999998888888887531 1356666666667
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEEee
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVE 162 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~e 162 (256)
+.|+++++..+++.+..+ +|++++||++++.++.++++.|.++++++++++.+.+++..|+++..|++ ++|.++.|
T Consensus 80 ~~g~~~al~~~~~~~~~~---~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~-~~v~~~~e 155 (217)
T cd04181 80 PLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVE 155 (217)
T ss_pred CCccHHHHHHhhhhcCCC---CEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEEcCC-CcEEEEEE
Confidence 789999999999999433 79999999999999999999999899899999988877889999999987 89999999
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHHhcccC---CCCcchhhHHHHHhcCcEEEEEeCceEEecC
Q 046608 163 KPKNFVGNKINAGIYLLNPSVLDRIELK---PTSIEKEVFPEIAVENKLFAMVLPGFWMDIG 221 (256)
Q Consensus 163 k~~~~~~~~~~~Giy~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~ 221 (256)
||....+.++++|+|+|++++++.+... ...+..++++.+++++++.+++++|+|+|||
T Consensus 156 k~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 156 KPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred CCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 9976666899999999999999887643 2456678999999889999999999999986
No 31
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.5e-35 Score=228.81 Aligned_cols=234 Identities=29% Similarity=0.423 Sum_probs=197.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh------------
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE------------ 68 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~------------ 68 (256)
+||||+|||.||||.|.|+..||-|+|+.+||+|+|+++.+.++|+++|++||+++...|++||....
T Consensus 5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~ 84 (291)
T COG1210 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKR 84 (291)
T ss_pred cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHH
Confidence 58999999999999999999999999999999999999999999999999999998877777664211
Q ss_pred ------hc--cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeeccc---chHHHHHHHHhcCCceEEEEE
Q 046608 69 ------KK--LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEY---PLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 69 ------~~--~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~i~~~ 137 (256)
+. ..+.+.++.|.++.|.++|+.+|...++++ ||.|+.+|.++.. .+.++++.+.+.++. ++.+.
T Consensus 85 ~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~E---pFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~ 160 (291)
T COG1210 85 ELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDE---PFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVE 160 (291)
T ss_pred HHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCC---ceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEE
Confidence 11 146788999999999999999999999998 9999999997653 378999998888774 44444
Q ss_pred ec--CCCcCceeEE----EcCCCCeEeEEeecCC--CCCCCeEEEEEEEeCHhhHHhcccCCC-----CcchhhHHHHHh
Q 046608 138 KV--DEPSKYGVVV----MEETMGKVEKFVEKPK--NFVGNKINAGIYLLNPSVLDRIELKPT-----SIEKEVFPEIAV 204 (256)
Q Consensus 138 ~~--~~~~~~~~v~----~~~~~~~v~~~~ek~~--~~~~~~~~~Giy~~~~~~~~~l~~~~~-----~~~~~~~~~l~~ 204 (256)
++ ++.+.||++. .+.+..+|..+.|||. ..+|+++..|.|+|++++|+.|++... -...|.+..+++
T Consensus 161 ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~ 240 (291)
T COG1210 161 EVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLK 240 (291)
T ss_pred ECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHh
Confidence 44 5679999998 3333348999999995 567999999999999999999976322 123688999999
Q ss_pred cCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhc
Q 046608 205 ENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQ 238 (256)
Q Consensus 205 ~~~v~~~~~~~~~~di~t~~d~~~a~~~~~~~~~ 238 (256)
..++.++.+.|..+|+|++..|.+|+-.|..+..
T Consensus 241 ~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~~ 274 (291)
T COG1210 241 KEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRP 274 (291)
T ss_pred hCcEEEEEecccEEccCCcccHHHHHHHHHhhCh
Confidence 9999999999999999999999999998876543
No 32
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=231.32 Aligned_cols=255 Identities=38% Similarity=0.707 Sum_probs=222.5
Q ss_pred CeEEEEeCC--CCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhhhhccCcEEEe
Q 046608 1 MKALILVGG--FGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITC 77 (256)
Q Consensus 1 m~aiIlaaG--~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~ 77 (256)
.+||||.|| +|+||+|++-+.||||+|++|.|||+|-|+.|.+. +..+|+++.=++.+....++......+++.+.+
T Consensus 3 ~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvrY 82 (407)
T KOG1460|consen 3 VKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVRY 82 (407)
T ss_pred eEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchhh
Confidence 379999999 79999999999999999999999999999999988 588999988888888888888877788899999
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcCceeEEEcCCCC
Q 046608 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETMG 155 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~~ 155 (256)
..++.+.|+++.++.-.+.+-..+++.|+|++||.-.+.++..+++.|.+.+...+++++... +.++||.++.|+.++
T Consensus 83 L~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t~ 162 (407)
T KOG1460|consen 83 LREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPSTG 162 (407)
T ss_pred hccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCcC
Confidence 999999999999999999887666668999999998888999999999999999999888774 578999999998889
Q ss_pred eEeEEeecCCCCCCCeEEEEEEEeCHhhHHhccc-----------------------CCCCcchhhHHHHHhcCcEEEEE
Q 046608 156 KVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL-----------------------KPTSIEKEVFPEIAVENKLFAMV 212 (256)
Q Consensus 156 ~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~-----------------------~~~~~~~~~~~~l~~~~~v~~~~ 212 (256)
+|..+.|||....++.+++|+|+|++++|+.+.+ +...+++|++..+...+.++++.
T Consensus 163 evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~ 242 (407)
T KOG1460|consen 163 EVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYE 242 (407)
T ss_pred ceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEe
Confidence 9999999999999999999999999999886531 01234678999999989999999
Q ss_pred eCceEEecCCHHHHHHHHHHHHhhhcccCCccccc--Cc--eeccCC
Q 046608 213 LPGFWMDIGQPKDYITGLRLYLDFLQKNSSSKLAT--GS--NIIGNV 255 (256)
Q Consensus 213 ~~~~~~di~t~~d~~~a~~~~~~~~~~~~~~~~~~--~~--~~~g~~ 255 (256)
..+.|-.|.|+..-+.|++.|+...+...++++.. ++ .|.|+|
T Consensus 243 t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdV 289 (407)
T KOG1460|consen 243 TTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDV 289 (407)
T ss_pred cccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeee
Confidence 99999999999999999999998776655555542 22 366665
No 33
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=100.00 E-value=1.5e-32 Score=221.32 Aligned_cols=215 Identities=27% Similarity=0.442 Sum_probs=168.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|+++|+|++++..+.+.+++.+. .++.+++..++.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPDYA 77 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcchh
Confidence 69999999999999999999999999999999999999999999999999999988988888753 267777776666
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCC--cCceeEEEcCCCCeEeEE
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEP--SKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~v~~~~~~~~v~~~ 160 (256)
..|+++++..+++.+. + +|++++||++++. .+++.+.+++++.++++.+..+. ..++.. .+++ +++..+
T Consensus 78 ~~g~~~s~~~~~~~~~-~---~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~ 148 (229)
T cd02523 78 ETNNIYSLYLARDFLD-E---DFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKD-LDDA-GVLLGI 148 (229)
T ss_pred hhCcHHHHHHHHHHcC-C---CEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceee-ecCc-cceEee
Confidence 8899999999999993 3 7999999999864 45566666777888777663322 333332 2333 678888
Q ss_pred eecCCCCC-CCeEEEEEEEeCHhhHHhccc---------CCCCcchhhHHHHHhcCc--EEEEEeCceEEecCCHHHHHH
Q 046608 161 VEKPKNFV-GNKINAGIYLLNPSVLDRIEL---------KPTSIEKEVFPEIAVENK--LFAMVLPGFWMDIGQPKDYIT 228 (256)
Q Consensus 161 ~ek~~~~~-~~~~~~Giy~~~~~~~~~l~~---------~~~~~~~~~~~~l~~~~~--v~~~~~~~~~~di~t~~d~~~ 228 (256)
.+|+.... ..++++|+|+|+++++..+.+ ....+..++++.+++..+ +..+.. ++|.|||||+||.+
T Consensus 149 ~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~ 227 (229)
T cd02523 149 ISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLER 227 (229)
T ss_pred cccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHh
Confidence 88876543 458999999999999776532 123344688888887444 444444 79999999999998
Q ss_pred HH
Q 046608 229 GL 230 (256)
Q Consensus 229 a~ 230 (256)
|+
T Consensus 228 a~ 229 (229)
T cd02523 228 AE 229 (229)
T ss_pred hC
Confidence 73
No 34
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=100.00 E-value=4.6e-32 Score=218.82 Aligned_cols=216 Identities=21% Similarity=0.362 Sum_probs=168.6
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCCh---HHHHHHHHhhhhccCcEEEeec
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP---EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~---~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
+||||||.|+||+|+|...||+|+|++|+|||+|+++.+.++|++++++++++.. ..+.+.+.... .++.+.+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~--~~~~i~~~- 77 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLA--PNATVVEL- 77 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhC--CCCEEEEe-
Confidence 4899999999999999999999999999999999999999999999999986432 22333333221 14555444
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEK 159 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~ 159 (256)
+..+.|+++++..++..+..++ +|++++||++++.++.+++..|...+.+.++++... ....|+++..|++ ++|..
T Consensus 78 ~~~~~g~~~~l~~a~~~l~~~~--~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~v~~d~~-~~v~~ 153 (231)
T cd04183 78 DGETLGAACTVLLAADLIDNDD--PLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS-SHPRWSYVKLDEN-GRVIE 153 (231)
T ss_pred CCCCCcHHHHHHHHHhhcCCCC--CEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC-CCCCeEEEEECCC-CCEEE
Confidence 4468899999999999985322 799999999999888888887777666777666665 4567999999887 89999
Q ss_pred EeecCCCCCCCeEEEEEEEeCHh-hH-Hhccc--------CCCCcchhhHHHHHhcC-cEEEEEe-CceEEecCCHHHHH
Q 046608 160 FVEKPKNFVGNKINAGIYLLNPS-VL-DRIEL--------KPTSIEKEVFPEIAVEN-KLFAMVL-PGFWMDIGQPKDYI 227 (256)
Q Consensus 160 ~~ek~~~~~~~~~~~Giy~~~~~-~~-~~l~~--------~~~~~~~~~~~~l~~~~-~v~~~~~-~~~~~di~t~~d~~ 227 (256)
+.+|+. .+.++++|+|+|+++ .| +.+.. ....+..++++.+++.+ ++.++.+ .++|.|||||+||.
T Consensus 154 ~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl~ 231 (231)
T cd04183 154 TAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDLE 231 (231)
T ss_pred eEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhcC
Confidence 988854 456899999999987 43 33321 11123368999999887 6999999 57999999999973
No 35
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.9e-32 Score=223.06 Aligned_cols=228 Identities=27% Similarity=0.407 Sum_probs=193.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||.. ..||.|-+++|+||++|+|+.+...+++++++|+++..+.+.+.+.+.. .+.+..|
T Consensus 3 ~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~-----~v~~v~Q 74 (460)
T COG1207 3 LSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD-----DVEFVLQ 74 (460)
T ss_pred ceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc-----CceEEEe
Confidence 5799999999999988 8999999999999999999999999999999999999999999987531 4667789
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
.++.||++++.+|++.+....++.+||++||. +. .+.++++++.+..+++.++++++..++|..||.+..+++ ++|.
T Consensus 75 ~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~-g~V~ 153 (460)
T COG1207 75 EEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGN-GEVT 153 (460)
T ss_pred cccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCC-CcEE
Confidence 99999999999999999543333699999999 33 344888999999999999999999999999999999998 8999
Q ss_pred EEeecCCCC----CCCeEEEEEEEeCHhhHHhc----cc---CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCCHH
Q 046608 159 KFVEKPKNF----VGNKINAGIYLLNPSVLDRI----EL---KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giy~~~~~~~~~l----~~---~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t~~ 224 (256)
++.|..+.. .-..+|+|+|+|....+..+ .+ +..++..|++..+..+| ++.++...+ ...-||+-.
T Consensus 154 ~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~ 233 (460)
T COG1207 154 AIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRV 233 (460)
T ss_pred EEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHH
Confidence 999976532 23489999999998765533 22 23556689999998887 788888875 578999999
Q ss_pred HHHHHHHHHHhhh
Q 046608 225 DYITGLRLYLDFL 237 (256)
Q Consensus 225 d~~~a~~~~~~~~ 237 (256)
+|.++++.+.++.
T Consensus 234 qLa~~e~~~q~r~ 246 (460)
T COG1207 234 QLAEAERIMQRRI 246 (460)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887644
No 36
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.3e-31 Score=237.68 Aligned_cols=228 Identities=20% Similarity=0.288 Sum_probs=183.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.+||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++.... ..+.+..+
T Consensus 5 ~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~~~~~~~~ 77 (482)
T PRK14352 5 TAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA----PEVDIAVQ 77 (482)
T ss_pred ceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC----CccEEEeC
Confidence 4689999999999987 6899999999999999999999999999999999998888888876532 12334456
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-c-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-S-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.+++.+.....++|++++||+. + ..++.++++.+..++.+++++..+..++..|+.+..+++ ++|.
T Consensus 78 ~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~~-g~V~ 156 (482)
T PRK14352 78 DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQD-GEVT 156 (482)
T ss_pred CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECCC-CCEE
Confidence 677899999999999986422237999999993 3 456899999888887777777777788889999888877 8999
Q ss_pred EEeecCCCCC----CCeEEEEEEEeCHhhHHhc-c---cC---CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHH
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLNPSVLDRI-E---LK---PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDY 226 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~~~~~~~l-~---~~---~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~ 226 (256)
++.|||.... .+++++|+|+|++++|..+ . .. ...+..++++.+++.+ ++.+++++++|.|+++++++
T Consensus 157 ~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 157 AIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred EEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 9999987432 3478999999999998653 2 11 2233479999999887 79999999999999999888
Q ss_pred ------HHHHHHHHhh
Q 046608 227 ------ITGLRLYLDF 236 (256)
Q Consensus 227 ------~~a~~~~~~~ 236 (256)
..+++.+++.
T Consensus 237 ~~~~a~~~~~~~~~~~ 252 (482)
T PRK14352 237 QLAALGAELNRRIVEA 252 (482)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455544444
No 37
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.3e-31 Score=234.87 Aligned_cols=226 Identities=23% Similarity=0.375 Sum_probs=184.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++.+. ..+.+..+
T Consensus 4 ~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i~~~~~ 75 (459)
T PRK14355 4 LAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDVSFALQ 75 (459)
T ss_pred ceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----CceEEEec
Confidence 5799999999999986 789999999999999999999999999999999999988888888652 13444456
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++.++.. .++|++++||+ +.+.++.++++.|..++.+++++..+..++..|+.+..|++ ++|.
T Consensus 76 ~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d~~-g~v~ 153 (459)
T PRK14355 76 EEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRDAD-GRVL 153 (459)
T ss_pred CCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEcCC-CCEE
Confidence 67889999999999999642 12799999998 34566899999988888888888877777888999888887 8999
Q ss_pred EEeecCCCC----CCCeEEEEEEEeCHhhH-Hhccc------CCCCcchhhHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 046608 159 KFVEKPKNF----VGNKINAGIYLLNPSVL-DRIEL------KPTSIEKEVFPEIAVEN-KLFAMVLPGF--WMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giy~~~~~~~-~~l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~~~--~~di~t~~ 224 (256)
++.|||... .++++++|+|+|+++++ +.+.. .......++++.+++.+ ++.+++++++ |+|++||+
T Consensus 154 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~ 233 (459)
T PRK14355 154 RIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRA 233 (459)
T ss_pred EEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHH
Confidence 999876321 24688999999999864 43431 12223368999999887 6999999886 99999999
Q ss_pred HHHHHHHHHHhh
Q 046608 225 DYITGLRLYLDF 236 (256)
Q Consensus 225 d~~~a~~~~~~~ 236 (256)
+|++|++.+...
T Consensus 234 ~~~~a~~~l~~~ 245 (459)
T PRK14355 234 QLAEAARVLRRR 245 (459)
T ss_pred HHHHHHHHHHHH
Confidence 999998766543
No 38
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-31 Score=207.01 Aligned_cols=221 Identities=28% Similarity=0.494 Sum_probs=161.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEc-cCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAI-NYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~-~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|+|||||||.|+||+| +.||||+.++|+++|.|.|++|.++|++++++|+ ++..+.+.+++.++. +..+++++.
T Consensus 4 ~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~--~~~~iv~N~ 78 (239)
T COG1213 4 MKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP--FNAKIVINS 78 (239)
T ss_pred eeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC--cceEEEeCC
Confidence 7999999999999999 8999999999999999999999999999999999 898999999988763 257788888
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEEEe-cCCC-cCceeEEEcCCCCe
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVTK-VDEP-SKYGVVVMEETMGK 156 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~~-~~~~-~~~~~v~~~~~~~~ 156 (256)
.+...+++.|++.|+++++.+ |++++||++|++. ++++++ ..+...++... .... .....+. +++ |+
T Consensus 79 ~y~ktN~~~Sl~~akd~~~~~----fii~~sD~vye~~~~e~l~~----a~~~~li~d~~~~~~~~~ea~kv~-~e~-G~ 148 (239)
T COG1213 79 DYEKTNTGYSLLLAKDYMDGR----FILVMSDHVYEPSILERLLE----APGEGLIVDRRPRYVGVEEATKVK-DEG-GR 148 (239)
T ss_pred CcccCCceeEEeeehhhhcCc----EEEEeCCEeecHHHHHHHHh----CcCCcEEEeccccccccCceeEEE-ecC-CE
Confidence 888888899999999999885 9999999999865 344444 32333333322 1111 2233444 444 89
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCC-CCcchhhHHHHHhcC--cEEEEE--eCc-eEEecCCHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAVEN--KLFAMV--LPG-FWMDIGQPKDYITGL 230 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~--~v~~~~--~~~-~~~di~t~~d~~~a~ 230 (256)
+.++.++.+.. +..++|++.++.+++....+.- .....+ +..+.... +...+. ..| .|+|||||||+.+|+
T Consensus 149 i~~igK~l~e~--~~e~iGi~~l~~~i~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar 225 (239)
T COG1213 149 IVEIGKDLTEY--DGEDIGIFILSDSIFEDTYELLVERSEYD-YREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERAR 225 (239)
T ss_pred EehhcCCcccc--cceeeeeEEechHHHHHHHHHHhhhhhHH-HHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHH
Confidence 99998877633 5789999999998776542110 000011 11122211 222222 225 899999999999999
Q ss_pred HHHHhhhcc
Q 046608 231 RLYLDFLQK 239 (256)
Q Consensus 231 ~~~~~~~~~ 239 (256)
+.+...+.+
T Consensus 226 ~~~~~~~~k 234 (239)
T COG1213 226 KYLVPNIKK 234 (239)
T ss_pred HHHHHHHHh
Confidence 998877655
No 39
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1e-30 Score=230.79 Aligned_cols=223 Identities=20% Similarity=0.304 Sum_probs=176.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
++|||||||.|+||+. ..||+|+|++|+|||+|+++.|.+++++++++++++..+.+.+++... ++++ ..+
T Consensus 6 ~~aiILAaG~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----~~~~--v~~ 76 (456)
T PRK14356 6 TGALILAAGKGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----DARF--VLQ 76 (456)
T ss_pred eeEEEEcCCCCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc----CceE--EEc
Confidence 5799999999999975 789999999999999999999999999999999999888877776532 3444 344
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
..+.|+++++..+++.+...+.+++++++||+ ++ ...+.++++.+. +++++++..+.+++..|+.+.. ++ ++|.
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~-~~-g~V~ 152 (456)
T PRK14356 77 EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR-RN-GHVA 152 (456)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE-cC-CeEE
Confidence 56789999999999998642223899999999 33 455888888765 5567888888888889998876 45 8999
Q ss_pred EEeecCCC------CCCCeEEEEEEEeCHhhHHhccc-------CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCC
Q 046608 159 KFVEKPKN------FVGNKINAGIYLLNPSVLDRIEL-------KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQ 222 (256)
Q Consensus 159 ~~~ek~~~------~~~~~~~~Giy~~~~~~~~~l~~-------~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t 222 (256)
++.||+.. +.+.++++|+|+|+++++..+.+ .......++++.+...+ ++.++.+.+ .|++|||
T Consensus 153 ~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~t 232 (456)
T PRK14356 153 AIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNT 232 (456)
T ss_pred EEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcC
Confidence 99998752 23468899999999998765421 11223468888888776 688888866 5799999
Q ss_pred HHHHHHHHHHHHhh
Q 046608 223 PKDYITGLRLYLDF 236 (256)
Q Consensus 223 ~~d~~~a~~~~~~~ 236 (256)
|+||.+|+..+..+
T Consensus 233 p~dl~~a~~~l~~~ 246 (456)
T PRK14356 233 PAELVRSEELLRAR 246 (456)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 40
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=4.1e-30 Score=227.45 Aligned_cols=219 Identities=21% Similarity=0.356 Sum_probs=173.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++... ++. +..+
T Consensus 8 ~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~i~--~v~~ 78 (481)
T PRK14358 8 LDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGS----GVA--FARQ 78 (481)
T ss_pred ceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccC----CcE--EecC
Confidence 6899999999999987 689999999999999999999999999999999999888888887532 343 3456
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.+++.+...+. +|++++||+ +.+.+++++++.+.++++++++++.+.+++..||.+..|++ ++|.
T Consensus 79 ~~~~Gt~~al~~~~~~l~~~~~-~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~~d~~-g~v~ 156 (481)
T PRK14358 79 EQQLGTGDAFLSGASALTEGDA-DILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVE 156 (481)
T ss_pred CCcCCcHHHHHHHHHHhhCCCC-cEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEEECCC-CCEE
Confidence 6678999999999998863212 699999999 33556899999998888888888888778888999999987 8999
Q ss_pred EEeecCCCCC----CCeEEEEEEEeC---HhhHHhcccC---CCCcchhhHHHHHhcC-cEEEEEeCceE--EecCCHHH
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLN---PSVLDRIELK---PTSIEKEVFPEIAVEN-KLFAMVLPGFW--MDIGQPKD 225 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~---~~~~~~l~~~---~~~~~~~~~~~l~~~~-~v~~~~~~~~~--~di~t~~d 225 (256)
++.|||.... ++++++|+|+|+ +++++.+... ...+..++++.+++.+ ++.++++.++| ..++++.+
T Consensus 157 ~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~ 236 (481)
T PRK14358 157 RIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAG 236 (481)
T ss_pred EEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHH
Confidence 9999986432 357899999999 4556666431 1223368999999887 69899888754 45555554
Q ss_pred HHHHH
Q 046608 226 YITGL 230 (256)
Q Consensus 226 ~~~a~ 230 (256)
+..+.
T Consensus 237 l~~~~ 241 (481)
T PRK14358 237 LAQLE 241 (481)
T ss_pred HHHHH
Confidence 44443
No 41
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.97 E-value=6.3e-30 Score=225.66 Aligned_cols=221 Identities=25% Similarity=0.395 Sum_probs=176.6
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++.++ ++.+. .+
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~----~i~~~--~~ 71 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR----DVNWV--LQ 71 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC----CcEEE--Ec
Confidence 8999999999999997 789999999999999999999999999999999999888888887754 44443 34
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
..+.|++++++.+++.++.++ +|+++.||+ ++ +.++.++++.+.+. ..++++.+.+++..|+.+..+++ ++|.
T Consensus 72 ~~~~G~~~ai~~a~~~l~~~~--~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d~~-g~v~ 146 (451)
T TIGR01173 72 AEQLGTGHAVLQALPFLPDDG--DVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIREND-GKVT 146 (451)
T ss_pred CCCCchHHHHHHHHHhcCCCC--cEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEcCC-CCEE
Confidence 556799999999999996432 799999999 33 45588888887654 36666667667777999988877 8999
Q ss_pred EEeecCCCCC----CCeEEEEEEEeCHhhHHh-ccc---C---CCCcchhhHHHHHhcC-cEEEEEeCce--EEecCCHH
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLNPSVLDR-IEL---K---PTSIEKEVFPEIAVEN-KLFAMVLPGF--WMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~~~~~~~-l~~---~---~~~~~~~~~~~l~~~~-~v~~~~~~~~--~~di~t~~ 224 (256)
++.|||.... ...+++|+|+|++++|.. +.. . ...+..++++.++..+ ++.++.++++ |++++||+
T Consensus 147 ~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~ 226 (451)
T TIGR01173 147 AIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRL 226 (451)
T ss_pred EEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHH
Confidence 9999875321 247899999999998543 332 1 1122368888898887 6999998886 99999999
Q ss_pred HHHHHHHHHHh
Q 046608 225 DYITGLRLYLD 235 (256)
Q Consensus 225 d~~~a~~~~~~ 235 (256)
|+.+++..+..
T Consensus 227 dl~~~~~~l~~ 237 (451)
T TIGR01173 227 QLAQLERILQR 237 (451)
T ss_pred HHHHHHHHHHH
Confidence 99998776654
No 42
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.97 E-value=1e-29 Score=204.84 Aligned_cols=213 Identities=25% Similarity=0.415 Sum_probs=171.1
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
|||||||.|+||++ ..||+|+|++|+|||+|+++.+.++++++++++++++.+.+.+++..+ ++.+. .+..
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~----~~~~~--~~~~ 71 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANP----NVEFV--LQEE 71 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCC----CcEEE--ECCC
Confidence 69999999999986 689999999999999999999999999999999998888888777652 45443 3455
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCee--cccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
..|+++++..++..++.. .++|++++||+. ...++.++++.+.+.++++++.+.+..++..++.+..+++ ++|.++
T Consensus 72 ~~g~~~ai~~a~~~~~~~-~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~v~~~ 149 (229)
T cd02540 72 QLGTGHAVKQALPALKDF-EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRI 149 (229)
T ss_pred CCCCHHHHHHHHHhhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcCC-CCEEEE
Confidence 689999999999999641 127999999993 3566899999888777778887777777888998888877 899999
Q ss_pred eecCCCCC----CCeEEEEEEEeCHhhHHh-ccc------CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCCHHHH
Q 046608 161 VEKPKNFV----GNKINAGIYLLNPSVLDR-IEL------KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQPKDY 226 (256)
Q Consensus 161 ~ek~~~~~----~~~~~~Giy~~~~~~~~~-l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t~~d~ 226 (256)
.+|+.... ..+.++|+|+|+++.+.. +.. +...+..++++.+++.+ ++.++.++| .|+.|+||.|+
T Consensus 150 ~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 150 VEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 99874322 268899999999876543 432 12223468999999877 699999986 69999999874
No 43
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=2.7e-30 Score=203.91 Aligned_cols=183 Identities=26% Similarity=0.451 Sum_probs=152.3
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccC-------cE
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLE-------IK 74 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~-------~~ 74 (256)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++.+..+|+++++|++++..+.+.+++.+. ..++ +.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEE
Confidence 68999999999999999999999999998 999999999999999999999999999999998752 1122 33
Q ss_pred EEee----ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEE
Q 046608 75 ITCS----QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 75 v~~~----~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
+... .+....|+++++..+++.++..+.++|+|++||++++.++.++++.|.++++++++++.
T Consensus 80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------------- 146 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------------- 146 (200)
T ss_pred EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-------------
Confidence 4332 13467899999999999996422237999999999999999999999888877776553
Q ss_pred cCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhc-cc----CCCCcchhhHHHHHhcCcEEEEEeCceEEec
Q 046608 151 EETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRI-EL----KPTSIEKEVFPEIAVENKLFAMVLPGFWMDI 220 (256)
Q Consensus 151 ~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l-~~----~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di 220 (256)
+++|+|+|+++++..+ .. +...+.+++++.+++.+++.++.++|+|.||
T Consensus 147 ---------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 147 ---------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred ---------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 5789999999988543 32 2445668999999988999999999999986
No 44
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=2.5e-29 Score=220.57 Aligned_cols=240 Identities=21% Similarity=0.326 Sum_probs=177.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||++ .+||+|+|++|+|||+|+++.+.++ +++++|++++..+.+.+++.+... ++++....+
T Consensus 3 ~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~~--~v~~~~~~~ 76 (430)
T PRK14359 3 LSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYFP--GVIFHTQDL 76 (430)
T ss_pred ccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcCC--ceEEEEecC
Confidence 5799999999999987 8999999999999999999999987 789999999999999888875421 455554444
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
....|+++++..+.. ..+ +|++++||.++.. ...++.+.+.++++++.+.+.+++..|+.+..+ + ++|..+
T Consensus 77 ~~~~gt~~al~~~~~--~~d---~vlv~~gD~p~~~--~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d-~-g~v~~i 147 (430)
T PRK14359 77 ENYPGTGGALMGIEP--KHE---RVLILNGDMPLVE--KDELEKLLENDADIVMSVFHLADPKGYGRVVIE-N-GQVKKI 147 (430)
T ss_pred ccCCCcHHHHhhccc--CCC---eEEEEECCccCCC--HHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc-C-CeEEEE
Confidence 456788888876422 122 7999999994421 233444444566777777777778789987765 4 799999
Q ss_pred eecCCCC----CCCeEEEEEEEeCHhhHHhccc-------CCCCcchhhHHHHHhcC-cEEEEEeCc-eEEecCCHHHHH
Q 046608 161 VEKPKNF----VGNKINAGIYLLNPSVLDRIEL-------KPTSIEKEVFPEIAVEN-KLFAMVLPG-FWMDIGQPKDYI 227 (256)
Q Consensus 161 ~ek~~~~----~~~~~~~Giy~~~~~~~~~l~~-------~~~~~~~~~~~~l~~~~-~v~~~~~~~-~~~di~t~~d~~ 227 (256)
.|++... ...+.++|+|+|++++|..+.. ....+..++++.+++.+ ++.++..++ +|.|||||+||.
T Consensus 148 ~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~ 227 (430)
T PRK14359 148 VEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELA 227 (430)
T ss_pred EECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHH
Confidence 9887532 2357899999999999886532 11223468888888876 788888874 899999999999
Q ss_pred HHHHHHHhhhccc---------C--CcccccCceeccCC
Q 046608 228 TGLRLYLDFLQKN---------S--SSKLATGSNIIGNV 255 (256)
Q Consensus 228 ~a~~~~~~~~~~~---------~--~~~~~~~~~~~g~~ 255 (256)
+|+..+..++... . ..-+.+++.|.|+|
T Consensus 228 ~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~ 266 (430)
T PRK14359 228 KAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGEC 266 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCce
Confidence 9987776554321 1 12255666666654
No 45
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=2.6e-29 Score=221.33 Aligned_cols=225 Identities=20% Similarity=0.282 Sum_probs=174.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.|||||||.|+||++ ..||+|+|++|+|||+|+++.+..++++++++++++..+.+.+++.++ +..+.+..+
T Consensus 6 ~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~----~~~~~~~~~ 78 (446)
T PRK14353 6 CLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI----APDAEIFVQ 78 (446)
T ss_pred ceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc----CCCceEEEc
Confidence 4799999999999985 679999999999999999999999999999999999888888887653 222233345
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-ISE-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++.+.... ++|++++||+ +++ ..+.++++.+ ..+.++++...+..++..|+.+.. ++ ++|.
T Consensus 79 ~~~~G~~~sl~~a~~~l~~~~-~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~~~-~~-g~v~ 154 (446)
T PRK14353 79 KERLGTAHAVLAAREALAGGY-GDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRLIV-KG-GRLV 154 (446)
T ss_pred CCCCCcHHHHHHHHHHHhccC-CCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEEEE-CC-CeEE
Confidence 567899999999999885211 2799999999 444 4477887744 455678888888778888988777 45 7999
Q ss_pred EEeecCCCC----CCCeEEEEEEEeCHhhH-Hhccc---C---CCCcchhhHHHHHhcC-cEEEEEeCc-eEEecCCHHH
Q 046608 159 KFVEKPKNF----VGNKINAGIYLLNPSVL-DRIEL---K---PTSIEKEVFPEIAVEN-KLFAMVLPG-FWMDIGQPKD 225 (256)
Q Consensus 159 ~~~ek~~~~----~~~~~~~Giy~~~~~~~-~~l~~---~---~~~~~~~~~~~l~~~~-~v~~~~~~~-~~~di~t~~d 225 (256)
++.|||... .+.++++|+|+|+++.+ +.+.+ . ...+..++++.+++.+ ++.++..++ .|+||+||+|
T Consensus 155 ~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~d 234 (446)
T PRK14353 155 AIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAE 234 (446)
T ss_pred EEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHH
Confidence 999997532 13588999999998665 33321 1 1123367889998877 698998875 6999999999
Q ss_pred HHHHHHHHHhh
Q 046608 226 YITGLRLYLDF 236 (256)
Q Consensus 226 ~~~a~~~~~~~ 236 (256)
|..|+..+..+
T Consensus 235 l~~a~~~~~~~ 245 (446)
T PRK14353 235 LAEAEAVWQAR 245 (446)
T ss_pred HHHHHHHHHHH
Confidence 99999766543
No 46
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=9.7e-30 Score=203.25 Aligned_cols=180 Identities=21% Similarity=0.344 Sum_probs=145.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhc-c---CcEEE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKK-L---EIKIT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~-~---~~~v~ 76 (256)
|+|||+|||.|+||+|+|..+||+|+||+|+|||+|+++++.++|+++|+|++++..+.+.+++++.... . +..+.
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999874321 0 13455
Q ss_pred eeccCCcCCCcHHHHHH--HhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhc-----CCceEEEEEecCCCc------
Q 046608 77 CSQETEPLGTAGPLALA--RDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGH-----GGEASIMVTKVDEPS------ 143 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~--~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~------ 143 (256)
+..+.+..|+++++... ...+.+ +|+++.||++++.++.++++.|.++ +++++++..+..++.
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~~~----~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~ 156 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLIRG----DFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTG 156 (217)
T ss_pred EEeCCCcCccchHHHHHhhccccCC----CEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCC
Confidence 55566677788877543 333432 6999999999999999999999873 777888877765543
Q ss_pred CceeEEEcCCCCeEeEEeecCCCCC--------------------CCeEEEEEEEeCHhhH
Q 046608 144 KYGVVVMEETMGKVEKFVEKPKNFV--------------------GNKINAGIYLLNPSVL 184 (256)
Q Consensus 144 ~~~~v~~~~~~~~v~~~~ek~~~~~--------------------~~~~~~Giy~~~~~~~ 184 (256)
.++++.+++++++|..+.|||.... +++.++|+|+|+++++
T Consensus 157 ~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 157 EEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 2567888765479999999986432 5788999999998763
No 47
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.97 E-value=5.8e-30 Score=210.83 Aligned_cols=221 Identities=24% Similarity=0.305 Sum_probs=161.7
Q ss_pred CeEEEEeCCCCCccccCCC-CCCCccceeCC-cchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEE
Q 046608 1 MKALILVGGFGTRLRPLTL-SVPKPLVDFAN-KPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKIT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~-~~pK~ll~i~g-~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~ 76 (256)
|++||||||.|+||+|+|. ..||+|+|++| +|||+++++++...+ +++|+|++++.. +.+.+++... ...+.
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~----~~~~~ 76 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEG----LPEEN 76 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhc----CCCce
Confidence 8999999999999999996 79999999988 999999999999984 999999998764 4455666541 12233
Q ss_pred eeccCCcCCCcHHHHHHHhhhcCC-CCCcEEEEeCCeecc--cchHHHHHHHHh---cCCceEEEEEecCCCcCceeEEE
Q 046608 77 CSQETEPLGTAGPLALARDKLIDD-SGEPFFVLNSDVISE--YPLKQMIEFHRG---HGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~~-~~~~~lv~~~D~~~~--~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
++.+....||+.++..++..+... .++.++|++||+++. .++.+.++.+.. .+..+++.+.+......||++..
T Consensus 77 ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~yGyI~~ 156 (274)
T cd02509 77 IILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGYGYIEA 156 (274)
T ss_pred EEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCeEEEEe
Confidence 345677889999999999988632 122799999999775 446666654332 55677777777666688999999
Q ss_pred cCCC-C---eEeEEeecCCCC--------CCCeEEEEEEEeCHhhHHhc-ccC----------------C---CCcchhh
Q 046608 151 EETM-G---KVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRI-ELK----------------P---TSIEKEV 198 (256)
Q Consensus 151 ~~~~-~---~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~~l-~~~----------------~---~~~~~~~ 198 (256)
+++. + +|.+|.|||... ...++|+|+|+|+++.+... ... . ..+..+.
T Consensus 157 ~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
T cd02509 157 GEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLRLLEEA 236 (274)
T ss_pred CCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhhhhHHH
Confidence 8652 2 899999999742 12488999999997665422 110 0 0011122
Q ss_pred HHH----------HHhcCcEEEEEeCceEEecCCHHH
Q 046608 199 FPE----------IAVENKLFAMVLPGFWMDIGQPKD 225 (256)
Q Consensus 199 ~~~----------l~~~~~v~~~~~~~~~~di~t~~d 225 (256)
++. |.+...+.+++.+..|.|+|||+.
T Consensus 237 ~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 237 FAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 222 334457888999889999999975
No 48
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.97 E-value=6.3e-29 Score=201.54 Aligned_cols=216 Identities=24% Similarity=0.299 Sum_probs=160.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|.+||||||.|+||+ ||+|++++|+|||+|+++.+.++ ++++|+|++++ +.+.+++..+ ++.+++..
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~~----~~~~~~~~ 69 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVESF----GGKVVMTS 69 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHHc----CCEEEEcC
Confidence 568999999999995 59999999999999999999999 89999999864 5666666543 57777666
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhc-CCceEEEEEecCCCc---Ccee--EEEc
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGH-GGEASIMVTKVDEPS---KYGV--VVME 151 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~---~~~~--v~~~ 151 (256)
+....|++ ++..++..+... .+.|+++.||+ ++ ...+..+++.+... +.++++++.+..++. .++. +..+
T Consensus 70 ~~~~~gt~-~~~~~~~~~~~~-~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 147 (239)
T cd02517 70 PDHPSGTD-RIAEVAEKLDAD-DDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD 147 (239)
T ss_pred cccCchhH-HHHHHHHhcCCC-CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC
Confidence 55566776 466677777531 12799999998 34 45689999887665 677887777765544 3443 5667
Q ss_pred CCCCeEeEEeecCCC-------CCCCeEEEEEEEeCHhhHHhcccC-CCCcc-hhhHH--HHHhcC-cEEEEEeCceEEe
Q 046608 152 ETMGKVEKFVEKPKN-------FVGNKINAGIYLLNPSVLDRIELK-PTSIE-KEVFP--EIAVEN-KLFAMVLPGFWMD 219 (256)
Q Consensus 152 ~~~~~v~~~~ek~~~-------~~~~~~~~Giy~~~~~~~~~l~~~-~~~~~-~~~~~--~l~~~~-~v~~~~~~~~~~d 219 (256)
++ +.|..+.+++.. ..+.++++|+|+|+++.+..+... ...+. .+.++ .+++.+ ++.++..++.|+|
T Consensus 148 ~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~ 226 (239)
T cd02517 148 KD-GYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIG 226 (239)
T ss_pred CC-CCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCCCCCC
Confidence 66 889888865432 135699999999999999987542 11111 23333 345566 6999999889999
Q ss_pred cCCHHHHHHHHH
Q 046608 220 IGQPKDYITGLR 231 (256)
Q Consensus 220 i~t~~d~~~a~~ 231 (256)
||||+||.+|++
T Consensus 227 i~t~~dl~~a~~ 238 (239)
T cd02517 227 VDTPEDLERVEA 238 (239)
T ss_pred CCCHHHHHHHHh
Confidence 999999999974
No 49
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.97 E-value=1.4e-28 Score=200.26 Aligned_cols=216 Identities=21% Similarity=0.268 Sum_probs=157.6
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||||||.|+||+ +|+|++++|+|||+|+++.+.++++++|+|++++ +.+.+++..+ ++++++..+.
T Consensus 4 ~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~~----~~~v~~~~~~ 71 (245)
T PRK05450 4 LIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEAF----GGEVVMTSPD 71 (245)
T ss_pred EEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHHc----CCEEEECCCc
Confidence 48999999999994 5999999999999999999999999999998853 5566666543 5677666555
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ec-ccchHHHHHHHHhcCCceEEEEEec------CCCcCceeEEEcCC
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDV-IS-EYPLKQMIEFHRGHGGEASIMVTKV------DEPSKYGVVVMEET 153 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~-~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~v~~~~~ 153 (256)
...|++. +..+...+...+.+.++++.||+ ++ ...+.++++.+..++++.++++.+. .++..++++ +|++
T Consensus 72 ~~~gt~~-~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~ 149 (245)
T PRK05450 72 HPSGTDR-IAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDAD 149 (245)
T ss_pred CCCchHH-HHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCC
Confidence 5556554 44444444211122799999999 44 3558899998877766777666655 345556655 7877
Q ss_pred CCeEeEEeecCCCC----------CCCeEEEEEEEeCHhhHHhcccCCC-Cc--c--hhhHHHHHhcC-cEEEEEeCc-e
Q 046608 154 MGKVEKFVEKPKNF----------VGNKINAGIYLLNPSVLDRIELKPT-SI--E--KEVFPEIAVEN-KLFAMVLPG-F 216 (256)
Q Consensus 154 ~~~v~~~~ek~~~~----------~~~~~~~Giy~~~~~~~~~l~~~~~-~~--~--~~~~~~l~~~~-~v~~~~~~~-~ 216 (256)
|+|+++.|||... .++++++|+|+|+++++..+..... .+ . .++++ ++..+ ++.++.++| +
T Consensus 150 -g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~~~~~~ 227 (245)
T PRK05450 150 -GRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLR-ALENGYRIHVVVVEEAP 227 (245)
T ss_pred -CcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHH-HHHCCCceEEEEeCCCC
Confidence 8999999998422 2479999999999999887753211 11 1 12233 44444 899999997 8
Q ss_pred EEecCCHHHHHHHHHHH
Q 046608 217 WMDIGQPKDYITGLRLY 233 (256)
Q Consensus 217 ~~di~t~~d~~~a~~~~ 233 (256)
|+|||||+||..|++.+
T Consensus 228 w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 228 SIGVDTPEDLERVRALL 244 (245)
T ss_pred CCCcCCHHHHHHHHHHh
Confidence 99999999999998764
No 50
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=1.4e-28 Score=217.15 Aligned_cols=216 Identities=26% Similarity=0.388 Sum_probs=170.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||.|+||++ ..||+|+|++|+|||+|+++.+.+++++++++++++..+.+.+++... ++.+ ..+
T Consensus 6 ~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~----~~~~--i~~ 76 (456)
T PRK09451 6 MSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE----PLNW--VLQ 76 (456)
T ss_pred ceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC----CcEE--EEC
Confidence 6799999999999985 789999999999999999999999999999999998888888777542 3333 345
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++.+..++ +|++++||+ +.+.++.++++.+.... .++++.+.+++..|+++.. ++ ++|.
T Consensus 77 ~~~~Gt~~al~~a~~~l~~~~--~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~~-~~-g~V~ 150 (456)
T PRK09451 77 AEQLGTGHAMQQAAPFFADDE--DILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRITR-EN-GKVV 150 (456)
T ss_pred CCCCCcHHHHHHHHHhhccCC--cEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEEe-cC-CeEE
Confidence 667899999999999886422 799999999 44566888888765443 4566667778888998754 45 8999
Q ss_pred EEeecCCCCC----CCeEEEEEEEeCHhhHHh-cc---c---CCCCcchhhHHHHHhcC-cEEEEE------eCce--EE
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLNPSVLDR-IE---L---KPTSIEKEVFPEIAVEN-KLFAMV------LPGF--WM 218 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~~~~~~~-l~---~---~~~~~~~~~~~~l~~~~-~v~~~~------~~~~--~~ 218 (256)
++.|||.... ++++++|+|+|+++.|.. +. . ....+..++++.+++.+ ++.++. +.|+ |.
T Consensus 151 ~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~ 230 (456)
T PRK09451 151 GIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRL 230 (456)
T ss_pred EEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHH
Confidence 9999986322 358999999999887753 32 1 12233479999999887 788885 3564 78
Q ss_pred ecCCHHHHHHHHH
Q 046608 219 DIGQPKDYITGLR 231 (256)
Q Consensus 219 di~t~~d~~~a~~ 231 (256)
|++++++|++++.
T Consensus 231 di~~~~~y~~~~~ 243 (456)
T PRK09451 231 QLARLERVYQAEQ 243 (456)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999874
No 51
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=6.5e-28 Score=213.19 Aligned_cols=225 Identities=24% Similarity=0.400 Sum_probs=177.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
++|||||||.|+||++ .+||+|+|++|+|||+|+|+++.+++++++++++++..+.+.+++.. ++.+ ..+
T Consensus 3 ~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~~~~--~~~ 72 (458)
T PRK14354 3 RYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----RSEF--ALQ 72 (458)
T ss_pred ceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----CcEE--EEc
Confidence 5799999999999985 78999999999999999999999999999999999988888877654 2333 335
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-e-cccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-I-SEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.++++++..+ ++++++.||. + .+.++.++++.+.+.+++.++++...+++..|+.+..+++ ++|.
T Consensus 73 ~~~~g~~~al~~a~~~l~~~~-d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d~~-~~V~ 150 (458)
T PRK14354 73 EEQLGTGHAVMQAEEFLADKE-GTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVE 150 (458)
T ss_pred CCCCCHHHHHHHHHHHhcccC-CeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEcCC-CCEE
Confidence 567899999999999986421 2799999998 3 3556899999888777788888777777778888888877 8999
Q ss_pred EEeecCCC----CCCCeEEEEEEEeCHhhH-Hhccc------CCCCcchhhHHHHHhcC-cEEEEEeCc--eEEecCCHH
Q 046608 159 KFVEKPKN----FVGNKINAGIYLLNPSVL-DRIEL------KPTSIEKEVFPEIAVEN-KLFAMVLPG--FWMDIGQPK 224 (256)
Q Consensus 159 ~~~ek~~~----~~~~~~~~Giy~~~~~~~-~~l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~~--~~~di~t~~ 224 (256)
.+.|||.. ....++++|+|+|+++.+ +.+.+ .......++++.+++.+ ++.++.++| .|++++|++
T Consensus 151 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~ 230 (458)
T PRK14354 151 KIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRV 230 (458)
T ss_pred EEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHH
Confidence 99998742 124588999999998754 44421 11122367888888776 799999886 477888999
Q ss_pred HHHHHHHHHHhhh
Q 046608 225 DYITGLRLYLDFL 237 (256)
Q Consensus 225 d~~~a~~~~~~~~ 237 (256)
||..|+..+..++
T Consensus 231 Dl~~a~~ll~~~~ 243 (458)
T PRK14354 231 ALAEAEKVMRRRI 243 (458)
T ss_pred HHHHHHHHHHHHH
Confidence 9999987665443
No 52
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.96 E-value=7.3e-28 Score=211.55 Aligned_cols=226 Identities=21% Similarity=0.284 Sum_probs=161.6
Q ss_pred CeEEEEeCCCCCccccCCCC-CCCccceeCC-cchHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhhhccCcE-EE
Q 046608 1 MKALILVGGFGTRLRPLTLS-VPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIK-IT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~-~pK~ll~i~g-~pli~~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~-v~ 76 (256)
|.+||||||.|+||+|+|.. .||+|+++.| +|||+|+++++..+++++++|+++... ..+.+.+..+ +++ ..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~----~~~~~~ 76 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI----GKLASN 76 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc----CCCcce
Confidence 78999999999999999985 8999999965 899999999999999999999997654 3445555543 332 22
Q ss_pred eeccCCcCCCcHHHHHHHhhhcC--CCCCcEEEEeCCeecc--cchHHHHHHH---HhcCCceEEEEEecCCCcCceeEE
Q 046608 77 CSQETEPLGTAGPLALARDKLID--DSGEPFFVLNSDVISE--YPLKQMIEFH---RGHGGEASIMVTKVDEPSKYGVVV 149 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~--~~~~~~lv~~~D~~~~--~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~ 149 (256)
+..+....||+.++..+...+.. ..++.++|++||+++. ..+.++++.+ .+.+..+++...+......||++.
T Consensus 77 ~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~t~YGyI~ 156 (468)
T TIGR01479 77 IILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPETGYGYIR 156 (468)
T ss_pred EEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCceEEE
Confidence 45667788999998887776622 1112589999998654 3477777654 334445556665555568899999
Q ss_pred EcC-----CCCeEeEEeecCCCCC--------CCeEEEEEEEeCHhhHH------------hccc---------CCCCcc
Q 046608 150 MEE-----TMGKVEKFVEKPKNFV--------GNKINAGIYLLNPSVLD------------RIEL---------KPTSIE 195 (256)
Q Consensus 150 ~~~-----~~~~v~~~~ek~~~~~--------~~~~~~Giy~~~~~~~~------------~l~~---------~~~~~~ 195 (256)
.++ +.++|.+|.|||.... +.++|+|+|+|+.+.+. .+.. ....+.
T Consensus 157 ~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T TIGR01479 157 RGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPDLDFIRLD 236 (468)
T ss_pred eCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCCcccceeC
Confidence 873 1258999999997421 35899999999954433 3321 001111
Q ss_pred hhhHH---------HHH-hcCcEEEEEeCceEEecCCHHHHHHHH
Q 046608 196 KEVFP---------EIA-VENKLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 196 ~~~~~---------~l~-~~~~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
.++++ .++ +..++.+++.+..|.|+|+|++|.+..
T Consensus 237 ~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 237 KEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 33444 233 334788999988999999999999874
No 53
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=1.9e-27 Score=209.59 Aligned_cols=216 Identities=28% Similarity=0.404 Sum_probs=170.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|+||++ .+||+|+|++|+|||+|+|+.+.+++ +++++++++..+.+.+++.. ++.+ ..+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-----~~~~--~~~ 69 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-----WVKI--FLQ 69 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-----ccEE--Eec
Confidence 8999999999999986 78999999999999999999999974 89999999888777777653 3333 345
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|++++++.+++++..++ +|++++||+ +.+.+++++++.|.++++++++++++.+++..|+.+..+ + ++|
T Consensus 70 ~~~~g~~~ai~~a~~~l~~~~--~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d-~-g~v- 144 (448)
T PRK14357 70 EEQLGTAHAVMCARDFIEPGD--DLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD-G-GKY- 144 (448)
T ss_pred CCCCChHHHHHHHHHhcCcCC--eEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc-C-CeE-
Confidence 667899999999999986422 899999998 445668999999988888999999888888899998877 5 788
Q ss_pred EEeecCCCCC----CCeEEEEEEEeCHhhHHh-ccc---C---CCCcchhhHHHHHhcCcEEEEEeCce--EEecCCHHH
Q 046608 159 KFVEKPKNFV----GNKINAGIYLLNPSVLDR-IEL---K---PTSIEKEVFPEIAVENKLFAMVLPGF--WMDIGQPKD 225 (256)
Q Consensus 159 ~~~ek~~~~~----~~~~~~Giy~~~~~~~~~-l~~---~---~~~~~~~~~~~l~~~~~v~~~~~~~~--~~di~t~~d 225 (256)
++.||+.... .+++++|+|+|++++|.. +.+ . ......++++.+. ++.++...++ |.+++||++
T Consensus 145 ~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~~---~v~~~~~~~~~~~~~i~~~~~ 221 (448)
T PRK14357 145 RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFAE---KVRVVKTEDLLEITGVNTRIQ 221 (448)
T ss_pred EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhhh---heeEEecCCHHHEEccCCHHH
Confidence 7777664321 358999999999998654 321 1 1122246776662 4777777786 788889999
Q ss_pred HHHHHHHHHh
Q 046608 226 YITGLRLYLD 235 (256)
Q Consensus 226 ~~~a~~~~~~ 235 (256)
|..+...+..
T Consensus 222 l~~~~~~~~~ 231 (448)
T PRK14357 222 LAWLEKQLRM 231 (448)
T ss_pred HHHHHHHHHH
Confidence 9998876643
No 54
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=5.9e-27 Score=206.62 Aligned_cols=222 Identities=21% Similarity=0.326 Sum_probs=174.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||++ ..||+|+|++|+|||+|+|+.+.+++++++++++++..+.+.+++.+.. ++.++ .+
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~i~~v--~~ 73 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP---GLEFV--EQ 73 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC---CeEEE--Ee
Confidence 5789999999999986 7899999999999999999999999999999999988888888876431 34443 45
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|+++++..+++++...+ +++++++||. +.+.++.++++.+.+++++.+++..+.+++..|+.+..+++ ++|.
T Consensus 74 ~~~~G~~~sv~~~~~~l~~~~-~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~-g~v~ 151 (450)
T PRK14360 74 QPQLGTGHAVQQLLPVLKGFE-GDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVE 151 (450)
T ss_pred CCcCCcHHHHHHHHHHhhccC-CcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEECCC-CCEE
Confidence 567899999999999886421 1699999999 34566899999988888888877777778888999988887 8999
Q ss_pred EEeecCC----CCCCCeEEEEEEEeCHhhHHhcccC-------CCCcchhhHHHHHhcCcEEEEEeCc--eEEecCCHHH
Q 046608 159 KFVEKPK----NFVGNKINAGIYLLNPSVLDRIELK-------PTSIEKEVFPEIAVENKLFAMVLPG--FWMDIGQPKD 225 (256)
Q Consensus 159 ~~~ek~~----~~~~~~~~~Giy~~~~~~~~~l~~~-------~~~~~~~~~~~l~~~~~v~~~~~~~--~~~di~t~~d 225 (256)
++.|||. ...++++++|+|+|+++.|..+.+. ...+..++++.+.. +..+.+.+ .|..+++|+|
T Consensus 152 ~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~---~~~~~v~~~~~~~~i~~~~d 228 (450)
T PRK14360 152 QIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDP---VMAVEVEDYQEINGINDRKQ 228 (450)
T ss_pred EEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhh---ceEEecCCHHHhhcCCCHHH
Confidence 9999975 2346799999999999877654211 11223466666643 34555665 4678999999
Q ss_pred HHHHHHHHHh
Q 046608 226 YITGLRLYLD 235 (256)
Q Consensus 226 ~~~a~~~~~~ 235 (256)
+..++..+..
T Consensus 229 l~~~~~~l~~ 238 (450)
T PRK14360 229 LAQCEEILQN 238 (450)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 55
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.96 E-value=7.6e-27 Score=189.20 Aligned_cols=211 Identities=22% Similarity=0.268 Sum_probs=153.2
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||+|.|+||+ +|+|++++|+|||+|+++.+.++ ++++|+|++++ +.+.+++..+ ++++.+..+
T Consensus 4 ~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~~----~~~v~~~~~ 71 (238)
T PRK13368 4 VVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEAF----GGKVVMTSD 71 (238)
T ss_pred EEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHHc----CCeEEecCc
Confidence 48999999999994 39999999999999999999999 79999999853 5677776643 666766655
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee--cccchHHHHHHHHhcCC-ceEEEEEecCC------CcCceeEEEc
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI--SEYPLKQMIEFHRGHGG-EASIMVTKVDE------PSKYGVVVME 151 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~--~~~~~~~~~~~~~~~~~-~~~i~~~~~~~------~~~~~~v~~~ 151 (256)
....|++ .+..++..++.+ .|+++.||+. .+.++.++++.+...+. ++++++.+.+. +..++. ..+
T Consensus 72 ~~~~g~~-~~~~a~~~~~~d---~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 146 (238)
T PRK13368 72 DHLSGTD-RLAEVMLKIEAD---IYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVD 146 (238)
T ss_pred cCCCccH-HHHHHHHhCCCC---EEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EEC
Confidence 5555665 577777776433 7999999983 35668999988765543 44444444332 444443 445
Q ss_pred CCCCeEeEEeecCCC------CCCCeEEEEEEEeCHhhHHhcccC-CCC---cch-hhHHHHHhcC-cEEEEEeCceEEe
Q 046608 152 ETMGKVEKFVEKPKN------FVGNKINAGIYLLNPSVLDRIELK-PTS---IEK-EVFPEIAVEN-KLFAMVLPGFWMD 219 (256)
Q Consensus 152 ~~~~~v~~~~ek~~~------~~~~~~~~Giy~~~~~~~~~l~~~-~~~---~~~-~~~~~l~~~~-~v~~~~~~~~~~d 219 (256)
++ |+++.+.++|.. ..+.+.++|+|+|++++|..+... ... ++. +++ .++..+ ++.++..++.|+|
T Consensus 147 ~~-g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~D 224 (238)
T PRK13368 147 KN-GDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIG 224 (238)
T ss_pred CC-CCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCC
Confidence 56 889888865421 113488999999999999987531 111 222 455 444344 6999998889999
Q ss_pred cCCHHHHHHHHH
Q 046608 220 IGQPKDYITGLR 231 (256)
Q Consensus 220 i~t~~d~~~a~~ 231 (256)
||||+||..|+.
T Consensus 225 I~t~~Dl~~a~~ 236 (238)
T PRK13368 225 VDTPEDLERVRA 236 (238)
T ss_pred CCCHHHHHHHHH
Confidence 999999999975
No 56
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=3.3e-26 Score=182.41 Aligned_cols=179 Identities=27% Similarity=0.487 Sum_probs=141.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhh--hccCcEEEe
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFE--KKLEIKITC 77 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~--~~~~~~v~~ 77 (256)
|+|||||||.|+||+|++...||+|+|++|+|||+|+++.+.++|+++|+|++++.. +.+.+++..+. ...+..+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 799999999999999999999999999999999999999999999999999998754 56777776531 111234455
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCC-------------CcC
Q 046608 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDE-------------PSK 144 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~ 144 (256)
..+....|+++++..+.+.+.. .|++++||.+++.++..+++.|.++++.++++..+... ...
T Consensus 81 ~~~~~~~gt~~al~~~~~~i~~----d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 156 (214)
T cd04198 81 IVLDEDMGTADSLRHIRKKIKK----DFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADE 156 (214)
T ss_pred ecCCCCcChHHHHHHHHhhcCC----CEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCCCC
Confidence 5567789999999999998843 59999999999999999999999988888888776431 134
Q ss_pred ceeEEEcCCCCeEeEEeecCC------------------CCCCCeEEEEEEEeCHhh
Q 046608 145 YGVVVMEETMGKVEKFVEKPK------------------NFVGNKINAGIYLLNPSV 183 (256)
Q Consensus 145 ~~~v~~~~~~~~v~~~~ek~~------------------~~~~~~~~~Giy~~~~~~ 183 (256)
+.++..|+.++++..+..... .-..++.++++|++++++
T Consensus 157 ~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v 213 (214)
T cd04198 157 RDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWV 213 (214)
T ss_pred CceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeee
Confidence 677888887678877664211 012457788888887654
No 57
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=3.2e-26 Score=182.67 Aligned_cols=179 Identities=25% Similarity=0.412 Sum_probs=142.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh-----ccCcEE
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK-----KLEIKI 75 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~-----~~~~~v 75 (256)
|+|||+|||.|+||.|+|...||+|+|++|+|||+|+++.+.++|+++++|++++..+.+.+++.+... ..++.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 799999999999999999999999999999999999999999999999999999998888888875321 123455
Q ss_pred EeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHH--HHhcCCceEEEEEecC--C-------CcC
Q 046608 76 TCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEF--HRGHGGEASIMVTKVD--E-------PSK 144 (256)
Q Consensus 76 ~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~--~-------~~~ 144 (256)
....+.+..|++.++..+.+.+.. +|++++||++++.++..++++ +...+.++++...... . ...
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i~~----dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLIRS----DFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEE 156 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcCCC----CEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCC
Confidence 666677899999999999998854 599999999999999999965 4444555665554432 2 345
Q ss_pred ceeEEEcCCC--CeEeEEeecCCC------------------CCCCeEEEEEEEeCHhh
Q 046608 145 YGVVVMEETM--GKVEKFVEKPKN------------------FVGNKINAGIYLLNPSV 183 (256)
Q Consensus 145 ~~~v~~~~~~--~~v~~~~ek~~~------------------~~~~~~~~Giy~~~~~~ 183 (256)
++++..|+++ .++..+.+++.. -..++.++|+|++++++
T Consensus 157 ~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~V 215 (216)
T cd02507 157 EDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDV 215 (216)
T ss_pred CcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcC
Confidence 7888989875 356666666542 12468889999998765
No 58
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=2.4e-24 Score=173.65 Aligned_cols=229 Identities=23% Similarity=0.296 Sum_probs=162.5
Q ss_pred CeEEEEeCCCCCccccCCC-CCCCcccee-CCcchHHHHHHHHHH-cCCCEEEEEccCChH-HHHHHHHhhhhccCcEEE
Q 046608 1 MKALILVGGFGTRLRPLTL-SVPKPLVDF-ANKPMILHQIEALKA-VGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKIT 76 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~-~~pK~ll~i-~g~pli~~~l~~l~~-~~i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~ 76 (256)
|.++|||||.||||||++. ..||+++++ ++++|++.+++++.. .+.+++++||+.... .+.+.+.......-..
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~-- 79 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAG-- 79 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccc--
Confidence 6799999999999999985 799999999 679999999999998 468999999987753 4556666532211111
Q ss_pred eeccCCcCCCcHHHHHHHhhhcCCCCC-cEEEEeCCeeccc--chHHHHHHH---HhcCCceEEEEEecCCCcCceeEEE
Q 046608 77 CSQETEPLGTAGPLALARDKLIDDSGE-PFFVLNSDVISEY--PLKQMIEFH---RGHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~~~~~-~~lv~~~D~~~~~--~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
+..++.+.+|+-++..+.-.+....++ -++|+++||+... .+.+.++.. .+.+.-+++...+..-...||||..
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~ 159 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET 159 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence 345677889999998887777655433 5899999996543 265555432 3344555555555545588999998
Q ss_pred cC-----CCCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhHH-hcccCC----------------CC-------
Q 046608 151 EE-----TMGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLD-RIELKP----------------TS------- 193 (256)
Q Consensus 151 ~~-----~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~-~l~~~~----------------~~------- 193 (256)
.+ +..+|.+|.|||... ...++|+|+|+|+.+.+. .+.+.. .+
T Consensus 160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e 239 (333)
T COG0836 160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE 239 (333)
T ss_pred CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence 65 235799999999832 235999999999976543 332110 00
Q ss_pred ----cchhhH--HHHHhcCcEEEEEeCceEEecCCHHHHHHHHH
Q 046608 194 ----IEKEVF--PEIAVENKLFAMVLPGFWMDIGQPKDYITGLR 231 (256)
Q Consensus 194 ----~~~~~~--~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~ 231 (256)
....-+ -.|.+..++.+++.+-.|-|+|+|..+++...
T Consensus 240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 000111 22455678999999889999999999987654
No 59
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=5.9e-24 Score=158.27 Aligned_cols=215 Identities=22% Similarity=0.340 Sum_probs=153.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|+|||||||.|||+.|+|...||+|+++.|+|||++.|+.|+++|+++|+||+|+..++.. ++++ ++++++++++.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-YLkd---Ky~vtLvyN~k 76 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-YLKD---KYDVTLVYNPK 76 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHHH-HHHH---hcCeEEEeCch
Confidence 8999999999999999999999999999999999999999999999999999999887654 3433 34899999999
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
+...++..|++.|++.+.+ .-|+.+|..+. +.+...+. ..+.-.+.........=.+..+.+ ++|+++
T Consensus 77 Y~~yNn~ySlyla~d~l~n-----tYiidsDnyl~---kNif~~~~---~~S~Yfav~~~~~tnEw~l~~~~~-~ki~~v 144 (231)
T COG4750 77 YREYNNIYSLYLARDFLNN-----TYIIDSDNYLT---KNIFLTKE---SHSKYFAVYRSGKTNEWLLIYNSD-GKITRV 144 (231)
T ss_pred HHhhhhHHHHHHHHHHhcc-----cEEeccchHhh---hhhhhcCc---ccceEEEEEecCCCceeEEEEcCC-CcEEEE
Confidence 9999999999999999987 56789999665 33333222 223333333333333445677777 899987
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHHhcc----cCCCCcc------hhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHH
Q 046608 161 VEKPKNFVGNKINAGIYLLNPSVLDRIE----LKPTSIE------KEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYITG 229 (256)
Q Consensus 161 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~----~~~~~~~------~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~~a 229 (256)
.-. ..+.++.+|+..|+..+-+.+. .-..+.+ .++.-.-++.-.+++-..++ .-+++++.+||...
T Consensus 145 ~Ig---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~ 221 (231)
T COG4750 145 DIG---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKF 221 (231)
T ss_pred Eec---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhh
Confidence 532 2345889999999976544331 1111111 12222222233444444444 57899999999887
Q ss_pred HHHHH
Q 046608 230 LRLYL 234 (256)
Q Consensus 230 ~~~~~ 234 (256)
...++
T Consensus 222 ~~~~l 226 (231)
T COG4750 222 EQKFL 226 (231)
T ss_pred hhhhc
Confidence 66543
No 60
>PLN02917 CMP-KDO synthetase
Probab=99.92 E-value=1.1e-22 Score=168.46 Aligned_cols=216 Identities=16% Similarity=0.126 Sum_probs=150.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCC-CEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i-~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||+|.|+||++ |+|++++|+|||+|+++.+..++. +.|+| +.+.+.+.+++..+ +++++...+
T Consensus 49 ~aIIpA~G~SsR~~~------K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV--~~~~e~I~~~~~~~----~v~vi~~~~ 116 (293)
T PLN02917 49 VGIIPARFASSRFEG------KPLVHILGKPMIQRTWERAKLATTLDHIVV--ATDDERIAECCRGF----GADVIMTSE 116 (293)
T ss_pred EEEEecCCCCCCCCC------CCeeeECCEEHHHHHHHHHHcCCCCCEEEE--ECChHHHHHHHHHc----CCEEEeCCc
Confidence 589999999999954 999999999999999999998864 44333 35667777777543 566666555
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEE----ecCCCcCceeEE--EcC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVT----KVDEPSKYGVVV--MEE 152 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~v~--~~~ 152 (256)
....|++.. ..+++.++.+ .+.++++.||..+ ...++++++.+.++ .+.++.+. ..+++..|+.++ .|+
T Consensus 117 ~~~~GT~~~-~~a~~~l~~~-~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~~~ 193 (293)
T PLN02917 117 SCRNGTERC-NEALKKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVVDN 193 (293)
T ss_pred ccCCchHHH-HHHHHhccCC-CCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEECC
Confidence 656676554 6788888632 2279999999943 34589999877654 34444333 445678888875 676
Q ss_pred CCCeEeEEeec------CC---CCCCCeEEEEEEEeCHhhHHhccc---C---CCCcchhhHHHHHhcC-cEEEEEeCce
Q 046608 153 TMGKVEKFVEK------PK---NFVGNKINAGIYLLNPSVLDRIEL---K---PTSIEKEVFPEIAVEN-KLFAMVLPGF 216 (256)
Q Consensus 153 ~~~~v~~~~ek------~~---~~~~~~~~~Giy~~~~~~~~~l~~---~---~~~~~~~~~~~l~~~~-~v~~~~~~~~ 216 (256)
+ |++..|++. .. ...-.+.++|+|+|+.+.|..+.+ + ...+.+++. +.++| ++.++..+..
T Consensus 194 ~-g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~--~le~G~~i~~~~~~~~ 270 (293)
T PLN02917 194 Q-GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLK--VLENGYKMKVIKVDHE 270 (293)
T ss_pred C-CeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHH--HHhCCCceEEEEeCCC
Confidence 6 776644422 11 111248899999999998886532 1 122334555 44555 7888887666
Q ss_pred EEecCCHHHHHHHHHHHHh
Q 046608 217 WMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 217 ~~di~t~~d~~~a~~~~~~ 235 (256)
...|||++||..|++.+.+
T Consensus 271 ~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 271 AHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 7799999999999987643
No 61
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.91 E-value=2.3e-23 Score=181.74 Aligned_cols=227 Identities=21% Similarity=0.277 Sum_probs=154.9
Q ss_pred CeEEEEeCCCCCccccCCCC-CCCcccee-CCcchHHHHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEe
Q 046608 1 MKALILVGGFGTRLRPLTLS-VPKPLVDF-ANKPMILHQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITC 77 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~-~pK~ll~i-~g~pli~~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~ 77 (256)
|.+||||||.|+||+|+|.. .||+|+++ +++|||+++++++...++.+.++|++... ..+.+++..... ....+
T Consensus 6 ~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~---~~~~i 82 (478)
T PRK15460 6 LYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK---LTENI 82 (478)
T ss_pred eEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC---ccccE
Confidence 68999999999999999986 79999999 45799999999999888877778887653 445556654320 11123
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCC---CCcEEEEeCCeeccc-c-hHHHHHHHH---hcCCceEEEEEecCCCcCceeEE
Q 046608 78 SQETEPLGTAGPLALARDKLIDDS---GEPFFVLNSDVISEY-P-LKQMIEFHR---GHGGEASIMVTKVDEPSKYGVVV 149 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~---~~~~lv~~~D~~~~~-~-~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~v~ 149 (256)
..++.+.+|+.++..|...+.... ++.++|+++|++... . |.+.++... +.+.-+++...+..-.+.||||.
T Consensus 83 i~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyGYI~ 162 (478)
T PRK15460 83 ILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIR 162 (478)
T ss_pred EecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCCeEE
Confidence 456778899998887777664331 126889999996543 2 554443322 23444555555544457899999
Q ss_pred EcCCC--------CeEeEEeecCCCC-------CC-CeEEEEEEEeCHhhHH-hcccC----------------CC-C--
Q 046608 150 MEETM--------GKVEKFVEKPKNF-------VG-NKINAGIYLLNPSVLD-RIELK----------------PT-S-- 193 (256)
Q Consensus 150 ~~~~~--------~~v~~~~ek~~~~-------~~-~~~~~Giy~~~~~~~~-~l~~~----------------~~-~-- 193 (256)
.++.. ..|.+|.|||... .+ .++|+|+|+|+.+.+. .+.+. .. .
T Consensus 163 ~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~ 242 (478)
T PRK15460 163 RGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFI 242 (478)
T ss_pred eCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcccce
Confidence 87531 2699999999842 23 4899999999976644 22210 00 0
Q ss_pred -cchhhH--------HH--HHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 046608 194 -IEKEVF--------PE--IAVENKLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 194 -~~~~~~--------~~--l~~~~~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
+..+.+ .+ |.+...+.+++.+..|.|+|+|..+.+..
T Consensus 243 ~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 243 RVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred eeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 001111 12 33445788899988999999999998764
No 62
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5e-22 Score=162.77 Aligned_cols=227 Identities=22% Similarity=0.395 Sum_probs=163.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhh-cc-CcEEEe
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEK-KL-EIKITC 77 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~-~~-~~~v~~ 77 (256)
|++||+|||.|+||..++...||+|+|++|+|||+|.|++|.++|+++++|++.++ ...++..+.+... +. ...+.+
T Consensus 10 fqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v~i 89 (433)
T KOG1462|consen 10 FQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYVEI 89 (433)
T ss_pred hhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEEEe
Confidence 57999999999999999999999999999999999999999999999999999764 4566666654211 00 112222
Q ss_pred e-ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC-----------CCcCc
Q 046608 78 S-QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD-----------EPSKY 145 (256)
Q Consensus 78 ~-~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~ 145 (256)
. ......|+++++..-...+..+ .|+|+.||.+++.++..+++.++..++...++..... .....
T Consensus 90 p~~~~~d~gtadsLr~Iy~kikS~---DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~ 166 (433)
T KOG1462|consen 90 PTDDNSDFGTADSLRYIYSKIKSE---DFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQAR 166 (433)
T ss_pred ecccccccCCHHHHhhhhhhhccC---CEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCccccccccc
Confidence 1 1223679999999999999885 4999999999999999999998877766555544321 11233
Q ss_pred eeEEEcCCCCeEeEEeec-----------------CC-CCCCCeEEEEEEEeCHhhHHhccc--CCCCcchhhHHHHHhc
Q 046608 146 GVVVMEETMGKVEKFVEK-----------------PK-NFVGNKINAGIYLLNPSVLDRIEL--KPTSIEKEVFPEIAVE 205 (256)
Q Consensus 146 ~~v~~~~~~~~v~~~~ek-----------------~~-~~~~~~~~~Giy~~~~~~~~~l~~--~~~~~~~~~~~~l~~~ 205 (256)
.++-++++++++.-.... |+ .-.+.+.++.+|+|+..+++.+.+ ...+|..+++++++++
T Consensus 167 d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkk 246 (433)
T KOG1462|consen 167 DVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKK 246 (433)
T ss_pred ceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhh
Confidence 455556655554322211 11 112458899999999999999874 3456666666665542
Q ss_pred ---------------------------------CcEEEEEe--CceEEecCCHHHHHHHH
Q 046608 206 ---------------------------------NKLFAMVL--PGFWMDIGQPKDYITGL 230 (256)
Q Consensus 206 ---------------------------------~~v~~~~~--~~~~~di~t~~d~~~a~ 230 (256)
-+++++.. ..-+..++|...|+++|
T Consensus 247 Q~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN 306 (433)
T KOG1462|consen 247 QFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEIN 306 (433)
T ss_pred hhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhh
Confidence 23444443 33688999999999999
No 63
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.87 E-value=6.4e-20 Score=148.19 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=141.1
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
+||||||.|+||. +|+|++++|+|||.|+++.+..+++++|+|++. .+.+.+.+.++ +++++...+..
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~~----g~~~v~~~~~~ 69 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATD--DESVAQTCQKF----GIEVCMTSKHH 69 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHHc----CCEEEEeCCCC
Confidence 8999999999994 599999999999999999999888999999884 34566655543 56665443333
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-c-ccchHHHHHHHHhcCCceEEEEEecCCC-----cCceeEEEcCCCC
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVI-S-EYPLKQMIEFHRGHGGEASIMVTKVDEP-----SKYGVVVMEETMG 155 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~v~~~~~~~ 155 (256)
..| ...+..+...+...+.+.++++.||.. . +..++++++.+.....+++.++.+..+. ++...+..+.+ |
T Consensus 70 ~~G-t~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~-g 147 (238)
T TIGR00466 70 NSG-TERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQ-G 147 (238)
T ss_pred CCh-hHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCC-C
Confidence 334 445555555442111227999999994 3 3458899988765556777777776442 22334444665 7
Q ss_pred eEeEEeecCC----C-------CCC--CeEEEEEEEeCHhhHHhcccC-CCCcc----hhhHHHHHhcCcEEEEEeCce-
Q 046608 156 KVEKFVEKPK----N-------FVG--NKINAGIYLLNPSVLDRIELK-PTSIE----KEVFPEIAVENKLFAMVLPGF- 216 (256)
Q Consensus 156 ~v~~~~ek~~----~-------~~~--~~~~~Giy~~~~~~~~~l~~~-~~~~~----~~~~~~l~~~~~v~~~~~~~~- 216 (256)
.+..+++.+- . +.. .+...|+|.|+.++|.....- ...++ -+.++.+....++.++..++.
T Consensus 148 ~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~~ 227 (238)
T TIGR00466 148 YALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEVP 227 (238)
T ss_pred eEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCCC
Confidence 6655554311 1 111 356899999999999876432 12222 145666666558988887665
Q ss_pred EEecCCHHHH
Q 046608 217 WMDIGQPKDY 226 (256)
Q Consensus 217 ~~di~t~~d~ 226 (256)
-..||||+|+
T Consensus 228 ~~~vdt~~d~ 237 (238)
T TIGR00466 228 SVGVDTQEDL 237 (238)
T ss_pred CCCCCChHHc
Confidence 4599999997
No 64
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.86 E-value=3.6e-20 Score=157.89 Aligned_cols=205 Identities=14% Similarity=0.125 Sum_probs=144.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|.+||||||.|+||+. ..||++++++|+||++|+++.+.+++ +++|+|++++......+.+.. .... +.++
T Consensus 6 v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~---~~~~-v~~v- 77 (378)
T PRK09382 6 ISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP---EIKF-VTLV- 77 (378)
T ss_pred ceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc---cCCe-EEEe-
Confidence 4699999999999954 67999999999999999999999987 799999997765444333221 1111 2222
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
..+.+..+|++.+++.++.+ .+++++||..+ + +.++++++..... ++++.+.+..++..|+...++. ..+
T Consensus 78 -~gG~~r~~SV~~gL~~l~~d---~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR--~~l 149 (378)
T PRK09382 78 -TGGATRQESVRNALEALDSE---YVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDR--EGL 149 (378)
T ss_pred -CCCchHHHHHHHHHHhcCCC---eEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCc--ccE
Confidence 23445778999999998654 79999999843 3 4478888866543 5777888888877776544444 345
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHHHHh
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRLYLD 235 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~~~~ 235 (256)
..+ ++|+. |+.+.+.........+ .|..+.+...| ++.+++.++.|++|+||+||..|+..+..
T Consensus 150 ~~~-QTPQ~------------f~~~~l~~a~~~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 150 KLI-QTPQL------------SRTKTLKAAADGRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred EEE-ECCCC------------CCHHHHHHHHhCCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 444 66652 2333333222222333 56667777666 78888888899999999999999887654
No 65
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.85 E-value=1.1e-19 Score=145.69 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=139.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
+.+||||||.|+||.+ |+|++++|+|||+|+++.+.+++ +++|+|++ +.+.+.+.+..+ ++.+.+..
T Consensus 2 ~~~iIlA~G~s~R~~~------K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~~----~~~~~~~~ 69 (223)
T cd02513 2 ILAIIPARGGSKGIPG------KNIRPLGGKPLIAWTIEAALESKLFDRVVVST--DDEEIAEVARKY----GAEVPFLR 69 (223)
T ss_pred eEEEEecCCCCCCCCC------cccchhCCccHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHHh----CCCceeeC
Confidence 3589999999999943 99999999999999999999987 78888876 345555555443 33222221
Q ss_pred c----CCcCCCcHHHHHHHhhhcCC--CCCcEEEEeCCee--cccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEc
Q 046608 80 E----TEPLGTAGPLALARDKLIDD--SGEPFFVLNSDVI--SEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVME 151 (256)
Q Consensus 80 ~----~~~~g~~~s~~~~~~~i~~~--~~~~~lv~~~D~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~ 151 (256)
. ....|+.+++..+++.++.. ..+.++++.||+. ....++++++.+...+.++++.+.+..+...++....+
T Consensus 70 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (223)
T cd02513 70 PAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDD 149 (223)
T ss_pred ChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeecc
Confidence 1 23457788999999887541 1127999999993 34568999998887777877777776555544443322
Q ss_pred CCCCeEeEEeec--C---CCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHH
Q 046608 152 ETMGKVEKFVEK--P---KNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKD 225 (256)
Q Consensus 152 ~~~~~v~~~~ek--~---~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d 225 (256)
++ ..+..+.+. + ..+.....++|+|+++.+.+..... .+ .+++..+.++. .-+||+|++|
T Consensus 150 ~~-~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~---~~----------g~~~~~~~~~~~~~~dI~~~~D 215 (223)
T cd02513 150 NG-LEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNS---FF----------GGKTGPYEMPRERSIDIDTEED 215 (223)
T ss_pred CC-ceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCC---cc----------CCCeEEEEeCccceeCCCCHHH
Confidence 21 122222121 1 1122346788999999998765221 11 35777777766 5789999999
Q ss_pred HHHHHHH
Q 046608 226 YITGLRL 232 (256)
Q Consensus 226 ~~~a~~~ 232 (256)
|..|+..
T Consensus 216 ~~~ae~~ 222 (223)
T cd02513 216 FELAEAL 222 (223)
T ss_pred HHHHHHh
Confidence 9998653
No 66
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.85 E-value=4.5e-20 Score=147.49 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=139.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEeec
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
.+||||||.|+||+. ..||+|++++|+|||+|+++.+..+ ++++++|++++.. +.+.+.+... ..+.+..
T Consensus 1 ~aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----~~~~~~~ 72 (217)
T TIGR00453 1 SAVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----AVPKIVA 72 (217)
T ss_pred CEEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----CcEEEeC
Confidence 489999999999975 5699999999999999999999998 6999999997653 3444433321 1122222
Q ss_pred cCCcCCCcHHHHHHHhhh-cCCCCCcEEEEeCCee-c-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 80 ETEPLGTAGPLALARDKL-IDDSGEPFFVLNSDVI-S-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i-~~~~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
.+.+..+++..++..+ +.+ .++++.||+. . .+.+.++++.+.++ ++++++.+.. .+....+++ |.
T Consensus 73 --~~~~~~~sl~~~l~~~~~~d---~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~----~~v~~~~~~-g~ 140 (217)
T TIGR00453 73 --GGDTRQDSVRNGLKALKDAE---WVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA----DTLKRVEAD-GF 140 (217)
T ss_pred --CCchHHHHHHHHHHhCCCCC---EEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc----ceEEEEcCC-Cc
Confidence 2234568999999888 333 7999999994 3 34488888877654 3444444433 234444555 66
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhccc----CCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL----KPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLR 231 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~ 231 (256)
+..+.+... -....+ .+.|+.+.+..+.. +... ..|....+...+ ++..++.+...++||||+||..|+.
T Consensus 141 ~~~~~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 141 IVETVDREG---LWAAQT-PQAFRTELLKKALARAKEEGFE-ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred eeecCChHH---eEEEeC-CCcccHHHHHHHHHHHHhcCCC-CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 777765321 112333 68999888766532 2222 245556665556 7878877767789999999999875
Q ss_pred H
Q 046608 232 L 232 (256)
Q Consensus 232 ~ 232 (256)
.
T Consensus 216 ~ 216 (217)
T TIGR00453 216 L 216 (217)
T ss_pred h
Confidence 4
No 67
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.85 E-value=1.2e-19 Score=146.04 Aligned_cols=214 Identities=16% Similarity=0.163 Sum_probs=139.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (256)
+.+||||||.|+||+. ..||+|++++|+|||+|+++.+..++ +++|+|++++.. +.+.+.... . ...+.+.
T Consensus 4 ~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~-~~~~~~~ 76 (227)
T PRK00155 4 VYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---K-DPKVTVV 76 (227)
T ss_pred eEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---c-CCceEEe
Confidence 4689999999999964 56999999999999999999999875 899999997665 333332221 1 1112222
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
. .+.+.++++..+++.++..+ .++++.||+.+ ...++++++.+..++ .++.+.+..++ +. ..+++ |.
T Consensus 77 ~--~~~~~~~sv~~~l~~~~~~d--~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~--~~--~v~~~-g~ 145 (227)
T PRK00155 77 A--GGAERQDSVLNGLQALPDDD--WVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKDT--IK--RSDDG-GG 145 (227)
T ss_pred C--CcchHHHHHHHHHHhCCCCC--EEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecccc--EE--EEcCC-Cc
Confidence 2 23357899999999884322 79999999943 345889998776653 44444444332 22 22444 55
Q ss_pred EeEEeecCCCCCCCeEEEEEEEeCHhhHHhcccC---CCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAGIYLLNPSVLDRIELK---PTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRL 232 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~---~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~ 232 (256)
+.++.+.. .-...-+.++|+.+.+..+... ...+..+....+...+ ++..+..+..+++||||+||..|+..
T Consensus 146 ~~~~~~r~----~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~ 221 (227)
T PRK00155 146 IVDTPDRS----GLWAAQTPQGFRIELLREALARALAEGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAI 221 (227)
T ss_pred eeecCChH----HheeeeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHH
Confidence 65553211 1122233789998887765321 1222244445555555 67777766678899999999999887
Q ss_pred HHhh
Q 046608 233 YLDF 236 (256)
Q Consensus 233 ~~~~ 236 (256)
+..+
T Consensus 222 ~~~~ 225 (227)
T PRK00155 222 LKRR 225 (227)
T ss_pred HHhc
Confidence 6543
No 68
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.84 E-value=2.3e-19 Score=138.95 Aligned_cols=179 Identities=20% Similarity=0.313 Sum_probs=125.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|++||||||+|+||++ .||+|++++|+|||+|+++.+..++++++++++++..+.+..++... ...+ ..
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~~~~---~~ 69 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----YKDY---KN 69 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----CcEE---Ee
Confidence 8999999999999965 69999999999999999999999889999999998888887777652 1222 12
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
..+.|...++..++..+...+ +|+++.||+.+ ...++++++.+...+..+..+..+.....+.+ + +
T Consensus 70 ~~g~G~~~~l~~al~~~~~~~--~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~-~--~------- 137 (183)
T TIGR00454 70 ASGKGYIEDLNECIGELYFSE--PFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIPKEKYPNPS-I--D------- 137 (183)
T ss_pred cCCCCHHHHHHHHhhcccCCC--CEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEecccccCCCc-c--c-------
Confidence 456777889999988654322 89999999954 45589999987766665554444332111111 1 1
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
...++.+|+-++.+..-. ++ ++.+ +..++.-+.|||++|+..|+
T Consensus 138 ---------~~~~~p~g~n~~~~~~~~--~~------~~~~-----------~~~~~~~~nvnt~~d~~~~~ 181 (183)
T TIGR00454 138 ---------FNGLVPAGVNIVSSKNGY--QE------EEII-----------MVIDELIVNINTKDDLKLAE 181 (183)
T ss_pred ---------cccEeeeEEEEecCCCcc--cc------eeee-----------eccccceEecCCHHHHHHhh
Confidence 112678999999875111 10 0110 11123458999999998875
No 69
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.84 E-value=1.2e-19 Score=145.18 Aligned_cols=209 Identities=15% Similarity=0.199 Sum_probs=138.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||.|+||++ ..||+|++++|+|||+|+++.+..++ +++++|++++........+..... ...+.+...
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~--~~~~~~~~~ 76 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL--SKVVKIVEG 76 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc--CCCeEEECC
Confidence 589999999999976 47999999999999999999999986 899999998776544433322111 122333322
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cc-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SE-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+.+...++..+++.+...+.+.++++.||+. +. ..++++++.+...+ ..+...+..++ ....+++ |.+.
T Consensus 77 --~~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~----~~~~~~~-g~~~ 147 (218)
T cd02516 77 --GATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVTDT----IKRVDDD-GVVV 147 (218)
T ss_pred --chHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEecccc----EEEecCC-Ccee
Confidence 2356789999999884111227999999994 33 44888988775543 33444443222 2334555 7787
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhccc---CCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIEL---KPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYIT 228 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~---~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~ 228 (256)
++.+... -....++ ++|+.+.+..+.. +...+..|....+.+.+ ++..+..+..-+||+||+||..
T Consensus 148 ~~~~r~~---~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 148 ETLDREK---LWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred ecCChHH---hhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 7765321 1244555 8899888776632 11223356566666555 6777776666679999999964
No 70
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.83 E-value=5.6e-19 Score=134.56 Aligned_cols=186 Identities=17% Similarity=0.310 Sum_probs=132.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChH-HHHHHHHhhhhccCcEEEeecc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
.+||||||+|+||+. ||.|+|+.|+|++.++++.+.+++++++++|+++... ....... ..+++++.+++
T Consensus 7 ~~VvLAAGrssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~~~~v~npd 77 (199)
T COG2068 7 AAVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLGVTVVVNPD 77 (199)
T ss_pred EEEEEcccccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCCeEEEeCcc
Confidence 589999999999975 9999999999999999999999999999999998722 2222222 23678888877
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
+ ..|.+.|+..++.....++ +.++++.||+ +...++.++++.+...+ . +.... |+ |
T Consensus 78 ~-~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~--~v~p~------~~--------g--- 135 (199)
T COG2068 78 Y-AQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A--AVRPV------YG--------G--- 135 (199)
T ss_pred h-hhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c--eeeee------cc--------C---
Confidence 7 6699999999999998764 3799999999 44566899988766652 2 11111 10 1
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcC-cEEEEEe-CceEEecCCHHHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVEN-KLFAMVL-PGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~-~~~~~di~t~~d~~~a~~~~ 233 (256)
+..+ -.+|+++.|..+..-.-+ ..+...+.+.+ .+..++. .+.-.|||||+||.+++..+
T Consensus 136 ----~rG~---------Pv~~~~~~~~~l~~l~GD--~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~ 197 (199)
T COG2068 136 ----ARGH---------PVLLSKDLFPALARLSGD--VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLL 197 (199)
T ss_pred ----CcCC---------ceeechhHHHHHhhcCCc--hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhh
Confidence 1111 246777777776543222 22333333334 4555555 56789999999999998765
No 71
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=3.2e-18 Score=131.34 Aligned_cols=220 Identities=21% Similarity=0.270 Sum_probs=166.4
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
.+||+|.=.+|||.. |||..|+|+|||.|+.+++.+++.++++|.+ +.+.|.+.++++ |..+......
T Consensus 5 ~viIPAR~~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~----G~~avmT~~~ 72 (247)
T COG1212 5 VVIIPARLASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVAT--DDERIAEAVQAF----GGEAVMTSKD 72 (247)
T ss_pred EEEEecchhcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHh----CCEEEecCCC
Confidence 368899999999988 9999999999999999999999999999999 778888888876 6778877777
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCC-----CcCceeEEEcCCC
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDE-----PSKYGVVVMEETM 154 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~v~~~~~~ 154 (256)
.++|+ +.+..+...+...+.+.++=+.||..+ +..++++++.+..++++.+-++++..+ .++.-.++.|.+
T Consensus 73 h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~- 150 (247)
T COG1212 73 HQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKE- 150 (247)
T ss_pred CCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCC-
Confidence 77777 667777777754433478889999954 344899999888887777666666643 345556778887
Q ss_pred CeEeEEeecCCCCC-------CCeEEEEEEEeCHhhHHhccc-CCCCcch----hhHHHHHhcCcEEEEEeCceE-EecC
Q 046608 155 GKVEKFVEKPKNFV-------GNKINAGIYLLNPSVLDRIEL-KPTSIEK----EVFPEIAVENKLFAMVLPGFW-MDIG 221 (256)
Q Consensus 155 ~~v~~~~ek~~~~~-------~~~~~~Giy~~~~~~~~~l~~-~~~~~~~----~~~~~l~~~~~v~~~~~~~~~-~di~ 221 (256)
|+..-|++-+-... .-+.=.|+|.|+.+++...-. .+..++. +-++.|....++.+....... ..||
T Consensus 151 g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVD 230 (247)
T COG1212 151 GYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVD 230 (247)
T ss_pred CcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCC
Confidence 89999988654322 124568999999999887643 2222221 234445554588888877654 8999
Q ss_pred CHHHHHHHHHHHHh
Q 046608 222 QPKDYITGLRLYLD 235 (256)
Q Consensus 222 t~~d~~~a~~~~~~ 235 (256)
|||||.++.+.+.+
T Consensus 231 T~EDLe~v~~~~~~ 244 (247)
T COG1212 231 TPEDLERVRKILSN 244 (247)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999887654
No 72
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.82 E-value=4.2e-18 Score=136.04 Aligned_cols=204 Identities=22% Similarity=0.240 Sum_probs=142.8
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEee-cc
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCS-QE 80 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~-~~ 80 (256)
|||||+|.|+||. +|.+++++|+|||.|+++.+.+++ +++|+|++ +.+.+.+..+++ +..+.+. +.
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVst--d~~~i~~~a~~~----g~~v~~~r~~ 69 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVST--DDEEIAEVAKSY----GASVPFLRPK 69 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHHc----CCEeEEeChH
Confidence 7999999999995 499999999999999999999987 68887766 345566665544 5655442 21
Q ss_pred ---CCcCCCcHHHHHHHhhhcC-CCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCC
Q 046608 81 ---TEPLGTAGPLALARDKLID-DSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETM 154 (256)
Q Consensus 81 ---~~~~g~~~s~~~~~~~i~~-~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~ 154 (256)
....|+.+++..+++.+.. ...+.++++.||..+ ..+++++++.+.+.++++++.+.+...+..+.. ..+++
T Consensus 70 ~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~-~~~~~- 147 (222)
T TIGR03584 70 ELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAF-KLKEN- 147 (222)
T ss_pred HHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHhe-EECCC-
Confidence 3356788999999988843 112379999999954 356999999888777888887777554333332 33344
Q ss_pred CeEeEEeecC----CCC--CCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHH
Q 046608 155 GKVEKFVEKP----KNF--VGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYI 227 (256)
Q Consensus 155 ~~v~~~~ek~----~~~--~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~ 227 (256)
|.+..+.... ++. .....++++|+++++.+..-. .+ + .+++..+.++. .-+||||++||.
T Consensus 148 g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~----~~----~-----~~~~~~~~m~~~~~iDID~~~D~~ 214 (222)
T TIGR03584 148 GGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG----PI----F-----SPHSIPIVLPRHLVQDIDTLEDWE 214 (222)
T ss_pred CcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC----Cc----c-----CCCcEEEEeCccceeCCCCHHHHH
Confidence 5554444211 111 122568999999999876411 11 1 35777888776 578999999999
Q ss_pred HHHHHH
Q 046608 228 TGLRLY 233 (256)
Q Consensus 228 ~a~~~~ 233 (256)
.|+..+
T Consensus 215 ~ae~l~ 220 (222)
T TIGR03584 215 RAELLY 220 (222)
T ss_pred HHHHHH
Confidence 997643
No 73
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.82 E-value=2.3e-18 Score=127.65 Aligned_cols=110 Identities=29% Similarity=0.438 Sum_probs=93.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||+|||+|+||+. .-|||++++|+|||.|+++.+.+ .+++|+++++++.+.+++++.+. +++++.
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~----gv~vi~--- 68 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV----GVKVIE--- 68 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc----CceEEE---
Confidence 7899999999999973 26999999999999999999999 58999999999999999999875 566653
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-cc-chHHHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EY-PLKQMIEFHR 126 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~-~~~~~~~~~~ 126 (256)
..+.|-..-+..+++.++. |++++++|+.+ .. .++.+++.+.
T Consensus 69 tpG~GYv~Dl~~al~~l~~----P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 69 TPGEGYVEDLRFALESLGT----PILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred cCCCChHHHHHHHHHhcCC----ceEEEecccccCCHHHHHHHHHHHh
Confidence 3456788899999999987 89999999954 43 3778877655
No 74
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.81 E-value=1.1e-18 Score=136.03 Aligned_cols=119 Identities=21% Similarity=0.363 Sum_probs=91.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||++ ||+|++++|+|||+|+++.+..+++++++|++++......+.+... ++.+... +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~~----~~~~~~~-~ 70 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGL----PVVVVIN-P 70 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcCC----CeEEEeC-C
Confidence 5789999999999976 8999999999999999999999888999999988766555444332 4444333 3
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGG 130 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~ 130 (256)
....|++.++..+++.+.. ..+++++++||+.+ ...++++++.+...+.
T Consensus 71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 3356899999999998863 11289999999943 3447888887654443
No 75
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.81 E-value=1.3e-18 Score=135.13 Aligned_cols=107 Identities=25% Similarity=0.345 Sum_probs=85.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. ||++++++|+|||+|+++.+..+ +++|+|++++.... ... .++.++...
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~~----~~~~~v~~~- 65 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER----YAL----LGVPVIPDE- 65 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH----Hhh----cCCcEeeCC-
Confidence 6799999999999976 89999999999999999999988 89999999877544 111 245554432
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFH 125 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~ 125 (256)
....|+..++..++..++.+ .+++++||+.+ . ..++.+++.+
T Consensus 66 ~~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 66 PPGKGPLAGILAALRAAPAD---WVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEeCCcCCCCHHHHHHHHHhh
Confidence 24678999999999988754 79999999943 3 3477777765
No 76
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.80 E-value=2.3e-18 Score=134.49 Aligned_cols=181 Identities=16% Similarity=0.296 Sum_probs=117.3
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
+||||||.|+||++ ||+|++++|+|||+|+++.+.++++++++|++++..+.+.+.+.. .+++.++.... .
T Consensus 2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~---~~~v~~v~~~~-~ 72 (188)
T TIGR03310 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN---HSNITLVHNPQ-Y 72 (188)
T ss_pred eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc---CCCeEEEECcC-h
Confidence 79999999999964 899999999999999999999988999999998876554433321 23565554332 2
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-c-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEE
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVI-S-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~ 160 (256)
..|+.+++..+++.... .+++++++||+. + ...++++++.+.....++++.... + ++
T Consensus 73 ~~g~~~si~~~l~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~-------------~--~~---- 131 (188)
T TIGR03310 73 AEGQSSSIKLGLELPVQ--SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPLYK-------------G--KR---- 131 (188)
T ss_pred hcCHHHHHHHHhcCCCC--CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEeecC-------------C--cc----
Confidence 46888999999872111 128999999994 3 345888888766554433322110 0 00
Q ss_pred eecCCCCCCCeEEEEEEEeCHhhHHhcccCC-CCcchhhHHHHHhcCcEEEEEeC--ceEEecCCHHHHHH
Q 046608 161 VEKPKNFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAVENKLFAMVLP--GFWMDIGQPKDYIT 228 (256)
Q Consensus 161 ~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~~v~~~~~~--~~~~di~t~~d~~~ 228 (256)
..+ .+++++.+..+.... ..-...++..+. ..+..+.+. +.|+|||||+||.+
T Consensus 132 ----~~P---------l~~~~~~~~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~nint~~d~~~ 187 (188)
T TIGR03310 132 ----GHP---------VLFPRKLFPELLALTGDTGGRQILRELP--HEVKYVEVKDPGILFDIDTPEDYQA 187 (188)
T ss_pred ----CCC---------EEECHHHHHHHHhCCCCccHHHHHHhCc--ccEEEEEcCCCceeECCCCHHHHhh
Confidence 011 147777777664321 111122332221 134445543 46889999999964
No 77
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.80 E-value=3.2e-18 Score=137.91 Aligned_cols=214 Identities=11% Similarity=0.159 Sum_probs=136.5
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEeec
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
.+||||||.|+||+. +.||+|++++|+|||.|+++.+..++ +++++|+++... ..+.+.+.+++.. ...+.++
T Consensus 4 ~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~-~~~~~~v- 78 (230)
T PRK13385 4 ELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA-DQRVEVV- 78 (230)
T ss_pred EEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC-CCceEEc-
Confidence 589999999999974 57999999999999999999999874 899999996643 3333444443211 0012222
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
..+.+..+++..++..++..+ .++++.||..+ . ..++++++.+.++++ .+...+..+ .+....+ +.+
T Consensus 79 -~~g~~r~~sv~~gl~~~~~~d--~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~~~~~d-----ti~~~~~-~~~ 147 (230)
T PRK13385 79 -KGGTERQESVAAGLDRIGNED--VILVHDGARPFLTQDIIDRLLEGVAKYGA--AICAVEVKD-----TVKRVKD-KQV 147 (230)
T ss_pred -CCCchHHHHHHHHHHhccCCC--eEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc-----eEEEEcC-Cee
Confidence 123345699999999885432 68899999944 3 448899888766543 333333322 2222223 444
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhccc----CCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHHHH
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL----KPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGLRL 232 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~~~ 232 (256)
....++. .-+..-+.+.|+.+.+....+ +...+ .+....+...| ++..++-+...+.|+||+|+..|+..
T Consensus 148 ~~~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~-td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~ 222 (230)
T PRK13385 148 IETVDRN----ELWQGQTPQAFELKILQKAHRLASEQQFLG-TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAI 222 (230)
T ss_pred EeccCHH----HHhhhcCCceeeHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHH
Confidence 4333211 112223467888777664421 22333 44444444445 78888777778899999999999877
Q ss_pred HHhh
Q 046608 233 YLDF 236 (256)
Q Consensus 233 ~~~~ 236 (256)
+...
T Consensus 223 l~~~ 226 (230)
T PRK13385 223 LQGD 226 (230)
T ss_pred Hhhc
Confidence 6543
No 78
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.80 E-value=1.2e-18 Score=132.54 Aligned_cols=120 Identities=28% Similarity=0.442 Sum_probs=96.3
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
+||||||.|+||+. ||+|++++|+|||+|+++.+.++++++|+|++++ +.+.+.+... +++++....+
T Consensus 1 ~vILa~G~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~----~~~~v~~~~~- 68 (160)
T PF12804_consen 1 AVILAAGKSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY----GIKVVVDPEP- 68 (160)
T ss_dssp EEEEESSSCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT----TSEEEE-STS-
T ss_pred CEEECCcCcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc----CceEEEeccc-
Confidence 69999999999965 9999999999999999999999999999999977 4555555433 6777665544
Q ss_pred cCCCcHHHHHHHhhh-cCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEE
Q 046608 83 PLGTAGPLALARDKL-IDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i-~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~ 137 (256)
..|++++++.++..+ ..+ +|++++||+++ + ..++++++.+.+.+.++++...
T Consensus 69 ~~G~~~sl~~a~~~~~~~~---~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 69 GQGPLASLLAALSQLPSSE---PVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp SCSHHHHHHHHHHTSTTSS---EEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cCChHHHHHHHHHhcccCC---CcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 589999999999998 443 89999999954 4 4488999988777776655443
No 79
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.79 E-value=4.2e-18 Score=133.64 Aligned_cols=110 Identities=21% Similarity=0.262 Sum_probs=82.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. .||++++++|+|||+|+++.+. .++++|+|++++..+.. ... +++++....
T Consensus 4 ~~~vILA~G~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~~----~~~~v~~~~ 70 (193)
T PRK00317 4 ITGVILAGGRSRRMGG----VDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARY----AAF----GLPVIPDSL 70 (193)
T ss_pred ceEEEEcCCCcccCCC----CCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHH----Hhc----CCcEEeCCC
Confidence 6899999999999953 5899999999999999999998 56899999987653322 221 444443222
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHR 126 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~ 126 (256)
....|+..++..+++..+.+ .+++++||+.+ . ..+.++++...
T Consensus 71 ~~~~g~~~~i~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 71 ADFPGPLAGILAGLKQARTE---WVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 23468889999999876544 79999999943 4 34777777544
No 80
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.78 E-value=6.8e-18 Score=132.11 Aligned_cols=123 Identities=12% Similarity=0.145 Sum_probs=88.1
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.+||||||.|+||+. ||.|++++|+|||+|+++.+...++++++|++++..+.+...........++.++.+.+
T Consensus 1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRD 75 (190)
T ss_pred CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCC
Confidence 4689999999999976 89999999999999999988888899999999876543221111111112455554444
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHG 129 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~ 129 (256)
+ ..|.++++..++..+...+.+.+++++||+.+ . ..+.++++....+.
T Consensus 76 ~-~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 76 A-CEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred h-hhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 3 45888999999998743222389999999943 3 34778887655443
No 81
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.75 E-value=4.7e-17 Score=126.93 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=85.2
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+.. .+++|+|++++.... +... ..++.++....
T Consensus 1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~---~~~~~~i~~~~ 69 (186)
T TIGR02665 1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA---GFGLPVVPDAL 69 (186)
T ss_pred CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc---cCCCcEEecCC
Confidence 5789999999999963 48999999999999999999986 489999988655422 1111 11445543322
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-cccc-hHHHHHHHHhcC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~~~-~~~~~~~~~~~~ 129 (256)
....|+..++..++..++.+ .+++++||+. ...+ ++++++....++
T Consensus 70 ~~~~g~~~si~~al~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 117 (186)
T TIGR02665 70 ADFPGPLAGILAGLRWAGTD---WVLTVPCDTPFLPEDLVARLAAALEASD 117 (186)
T ss_pred CCCCCCHHHHHHHHHhcCCC---eEEEEecCCCcCCHHHHHHHHHHhhccC
Confidence 34679999999999988654 7999999994 3433 777777654433
No 82
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.75 E-value=2.6e-16 Score=127.58 Aligned_cols=211 Identities=14% Similarity=0.202 Sum_probs=131.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHc-CCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~-~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (256)
+.+||||||.|+||+. ..||+|++++|+|+|+|+++.+... ++++|+|++++.. +.+.+.+..+ +..+.++
T Consensus 25 i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~----~~~i~~v 97 (252)
T PLN02728 25 VSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI----DVPLKFA 97 (252)
T ss_pred eEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc----CCceEEc
Confidence 3689999999999975 6799999999999999999999985 7999999998764 3333444332 3334433
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
..+.+..+|++.++..+..+. +.++++.+|..+ ...+.++++....++ +++.+.+..+. ...++.+ +.
T Consensus 98 --~gg~~r~~SV~~gl~~l~~~~-~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~~dt----ik~v~~~-~~ 167 (252)
T PLN02728 98 --LPGKERQDSVFNGLQEVDANS-ELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPVKAT----IKEANSD-SF 167 (252)
T ss_pred --CCCCchHHHHHHHHHhccCCC-CEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecchhh----EEEecCC-Cc
Confidence 234556889999999886431 145566665633 344788888776654 45555554332 2222333 44
Q ss_pred EeEEeecCCCCCCCeEEEE-EEEeCHhhHHhcc----cCCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAG-IYLLNPSVLDRIE----LKPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~G-iy~~~~~~~~~l~----~~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
|.... . ++.++.+- --.|+.+.+.... ++...+ .|-...+...| ++..++-+..-+-|+||+|+..|+
T Consensus 168 v~~t~---~--R~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~~-TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~ 241 (252)
T PLN02728 168 VVKTL---D--RKRLWEMQTPQVIKPELLRRGFELVEREGLEV-TDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAE 241 (252)
T ss_pred eeecc---C--hHHeEEEeCCccchHHHHHHHHHHHHhcCCCc-CcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHH
Confidence 43321 1 11111111 2255555544332 222222 45455555555 676666555677999999999998
Q ss_pred HHHH
Q 046608 231 RLYL 234 (256)
Q Consensus 231 ~~~~ 234 (256)
..+.
T Consensus 242 ~~l~ 245 (252)
T PLN02728 242 RILN 245 (252)
T ss_pred HHHh
Confidence 7654
No 83
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.74 E-value=9.7e-17 Score=126.41 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=82.6
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.+||||||.|+||+. +|++++++|+|||+|+++.+... +++++|++++. +....... .++.++...
T Consensus 8 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~-----~~~~~i~~~- 74 (200)
T PRK02726 8 LVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLP-----PGCHWLREP- 74 (200)
T ss_pred ceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhcc-----CCCeEecCC-
Confidence 4689999999999965 89999999999999999999865 78999988642 22222111 134444332
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHh
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRG 127 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~ 127 (256)
....|...++..++..++.+ +++|++||+.+ . +.+.++++....
T Consensus 75 ~~~~G~~~si~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 75 PPSQGPLVAFAQGLPQIKTE---WVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCCChHHHHHHHHHhCCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 33478999999999998754 89999999944 3 347788776543
No 84
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=9.7e-16 Score=133.11 Aligned_cols=234 Identities=19% Similarity=0.327 Sum_probs=166.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHh--hhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE--FEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~--~~~~~~~~v~~~ 78 (256)
++||++|--.-+||.|+|..+|++|+|+.|.|||+|+|+.|.++|+.++++.+.....++.+|+++ |+..+...+..+
T Consensus 25 LqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti 104 (673)
T KOG1461|consen 25 LQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTI 104 (673)
T ss_pred eEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccceEEEE
Confidence 479999999999999999999999999999999999999999999999999999889999999985 443334333333
Q ss_pred ccCCcCCCcHHHHHHH--hhhcCCCCCcEEEEeCCeecccchHHHHHHHHh-----cCCceEEEEEecC--CCcCceeEE
Q 046608 79 QETEPLGTAGPLALAR--DKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRG-----HGGEASIMVTKVD--EPSKYGVVV 149 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~--~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~--~~~~~~~v~ 149 (256)
...+....++++...- +.+.. .|++++||++++.++.++++.|+. .++-+|++..+.. .......+.
T Consensus 105 ~s~~~~S~GDamR~id~k~litg----DFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~~~~~a 180 (673)
T KOG1461|consen 105 CSGESRSVGDAMRDIDEKQLITG----DFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTEQVVIA 180 (673)
T ss_pred cCCCcCcHHHHHHHHHhcceeec----ceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCcceEEE
Confidence 3333444444443222 22222 599999999999999999998842 2334444444431 123344667
Q ss_pred EcCCCCeEeEEee----cCC--------------CCCCCeEEEEEEEeCHhhHHhcccCC-CCcchhhHHHHHh----cC
Q 046608 150 MEETMGKVEKFVE----KPK--------------NFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVFPEIAV----EN 206 (256)
Q Consensus 150 ~~~~~~~v~~~~e----k~~--------------~~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~~~~~~l~~----~~ 206 (256)
+|.-+.++..+.+ +.. ....++.+++|.++++.++..+.++. +....+++.-++. +.
T Consensus 181 vd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDyq~r~DfV~GvL~~dilg~ 260 (673)
T KOG1461|consen 181 VDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDYQTRDDFVRGVLVDDILGY 260 (673)
T ss_pred EcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccceehhhhhhhhhhhhhcCC
Confidence 7776678887775 111 01245888999999999988776542 1223455444432 23
Q ss_pred cEEEEEeCc--eEEecCCHHHHHHHHHHHHhhhc
Q 046608 207 KLFAMVLPG--FWMDIGQPKDYITGLRLYLDFLQ 238 (256)
Q Consensus 207 ~v~~~~~~~--~~~di~t~~d~~~a~~~~~~~~~ 238 (256)
++++..... +-..+.++..|-...+.++.++.
T Consensus 261 kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~ 294 (673)
T KOG1461|consen 261 KIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWT 294 (673)
T ss_pred eEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhc
Confidence 787777766 67799999999999999987653
No 85
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.73 E-value=9.9e-16 Score=121.31 Aligned_cols=209 Identities=17% Similarity=0.209 Sum_probs=131.6
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (256)
+.+||+|||.|+||+. +.||++++++|+|+|.|+++.+.+.. +++|++++.+.. +.+.+.+.+ ..+.++
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----~~v~iv-- 71 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----KKVKIV-- 71 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----TTEEEE--
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----CCEEEe--
Confidence 3689999999999986 78999999999999999999999975 899999997765 444444444 134433
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
..+....+|++.++..+.... +.++|+.|=-.+ . ..+.++++..... .++++.+.+..+ .....+.+ +.
T Consensus 72 --~GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~D----Tik~v~~~-~~ 142 (221)
T PF01128_consen 72 --EGGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVTD----TIKRVDDD-GF 142 (221)
T ss_dssp --E--SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-SS----EEEEESTT-SB
T ss_pred --cCChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEeccc----cEEEEecC-Cc
Confidence 245566789999999998754 389999998833 3 4488898887652 345566655543 33444555 66
Q ss_pred EeEEeecCCCCCCCeEEEE-EEEeCHhhHHhcccCC----CCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAG-IYLLNPSVLDRIELKP----TSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~G-iy~~~~~~~~~l~~~~----~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
|.+..+ ++.++.+- --.|+.+.+....+.. ..+ .|-...+..-| ++..++-+..=+-|.||+|+..|+
T Consensus 143 v~~tld-----R~~l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~-tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae 216 (221)
T PF01128_consen 143 VTETLD-----RSKLWAVQTPQAFRFELLLEAYEKADEEGFEF-TDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAE 216 (221)
T ss_dssp EEEEET-----GGGEEEEEEEEEEEHHHHHHHHHTHHHHTHHH-SSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHH
T ss_pred ccccCC-----HHHeeeecCCCeecHHHHHHHHHHHHhcCCCc-cCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHH
Confidence 666543 22333322 3466666666543221 122 23223333334 777777655567999999999998
Q ss_pred HHH
Q 046608 231 RLY 233 (256)
Q Consensus 231 ~~~ 233 (256)
..+
T Consensus 217 ~ll 219 (221)
T PF01128_consen 217 ALL 219 (221)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 86
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.71 E-value=4.1e-16 Score=133.47 Aligned_cols=187 Identities=16% Similarity=0.215 Sum_probs=116.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. .||+|++++|+|||+|+++.+... +++++|+++...+.+...+. ++.++....
T Consensus 6 i~~VILAgG~s~Rmgg----~~K~ll~i~Gkpll~~~i~~l~~~-~~~iivvv~~~~~~~~~~~~------~~~~i~d~~ 74 (366)
T PRK14489 6 IAGVILAGGLSRRMNG----RDKALILLGGKPLIERVVDRLRPQ-FARIHLNINRDPARYQDLFP------GLPVYPDIL 74 (366)
T ss_pred ceEEEEcCCcccCCCC----CCCceeEECCeeHHHHHHHHHHhh-CCEEEEEcCCCHHHHHhhcc------CCcEEecCC
Confidence 4699999999999952 489999999999999999999864 89999977655544433321 233332222
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee-ccc-chHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEe
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI-SEY-PLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVE 158 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~-~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~ 158 (256)
....|...+++.+++.++.+ .+++++||+. ... .+.++++.+...++++++. . .+ ++
T Consensus 75 ~g~~G~~~si~~gl~~~~~~---~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~---~-----------~g--~~-- 133 (366)
T PRK14489 75 PGFQGPLSGILAGLEHADSE---YLFVVACDTPFLPENLVKRLSKALAIEGADIAVP---H-----------DG--ER-- 133 (366)
T ss_pred CCCCChHHHHHHHHHhcCCC---cEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE---e-----------cC--CC--
Confidence 33368889999999988654 7999999994 343 3777777655444433221 1 00 11
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc---eEEecCCHHHHHHHHHHH
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG---FWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~---~~~di~t~~d~~~a~~~~ 233 (256)
..+ . +.+|+++.+..+......-...+...+. ...+..++++. .+.|||||+||.++++..
T Consensus 134 ------g~P-----l--~aiy~~~~~~~l~~~l~~G~~~l~~~l~-~~~~~~v~~~~~~~~~~nINTpeDl~~l~~~~ 197 (366)
T PRK14489 134 ------AHP-----L--FALYHRSCLPALRRYLAEGERRLFDFFQ-RQRVRYVDLSTQKDAFFNVNTPEDLEQLRAIP 197 (366)
T ss_pred ------cee-----e--EEEEcHHHHHHHHHHHHhCCccHHHHHH-hCCcEEEeccCCccccccCCCHHHHHHHhhhh
Confidence 001 0 2256766666554210000122332222 23344555432 478999999999887653
No 87
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.70 E-value=2.3e-15 Score=118.69 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=135.5
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh-HHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~ 78 (256)
+.+||||||.|+||+. ..||++++++|+||++|.++.+.... +++|+|+++++. +.+.++... ..+-++.++
T Consensus 5 ~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~---~~~~~v~~v 78 (230)
T COG1211 5 VSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL---SADKRVEVV 78 (230)
T ss_pred EEEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh---ccCCeEEEe
Confidence 4689999999999988 89999999999999999999999996 899999998743 344444421 112233333
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCe
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGK 156 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~ 156 (256)
..+....+|++.+++.+...++++|+|+.+--.+ ...+.++++. ..+..+++.+.+..+.- ...+.+ +.
T Consensus 79 --~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~--~~~~~aai~alpv~DTi----k~~~~~-~~ 149 (230)
T COG1211 79 --KGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIEL--ADKYGAAILALPVTDTL----KRVDAD-GN 149 (230)
T ss_pred --cCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHh--hccCCcEEEEeeccCcE----EEecCC-CC
Confidence 4566678999999999985223388999888843 3447888843 33344666666665432 222333 56
Q ss_pred EeEEeecCCCCCCCeEEEE-EEEeCHhhHHhccc----CCCCcchhhHHHHHhcC-cEEEEEeCceEEecCCHHHHHHHH
Q 046608 157 VEKFVEKPKNFVGNKINAG-IYLLNPSVLDRIEL----KPTSIEKEVFPEIAVEN-KLFAMVLPGFWMDIGQPKDYITGL 230 (256)
Q Consensus 157 v~~~~ek~~~~~~~~~~~G-iy~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~-~v~~~~~~~~~~di~t~~d~~~a~ 230 (256)
|.++.... .++-+- --.|+.+.|..... ....+. |--..+...| ++..+.-+-+=+-|.||+|+..|+
T Consensus 150 i~~t~~R~-----~l~~~QTPQ~F~~~~L~~a~~~a~~~~~~~t-Ddas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~ 223 (230)
T COG1211 150 IVETVDRS-----GLWAAQTPQAFRLELLKQALARAFAEGREIT-DDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAE 223 (230)
T ss_pred eeeccChh-----hhhhhhCCccccHHHHHHHHHHHHhcCCCcC-CHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHH
Confidence 65553311 111000 12455555443321 223332 3333333334 777776655677999999999998
Q ss_pred HHH
Q 046608 231 RLY 233 (256)
Q Consensus 231 ~~~ 233 (256)
..+
T Consensus 224 ~il 226 (230)
T COG1211 224 AIL 226 (230)
T ss_pred HHh
Confidence 654
No 88
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.69 E-value=2.6e-15 Score=121.25 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=114.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCCh--HHHHHHHHhhhhccCcEEEeec
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~--~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
|||||||.|+||+ +|+|++++|+||++|+++.+..++ +++++|++++.. +.+.+++... ++.++...
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~----~v~~v~~~ 71 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL----GVKVFRGS 71 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc----CCeEEECC
Confidence 7999999999994 499999999999999999999987 899999998764 5555555432 55554433
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
.+ +.......++...+.+ .++++.||+.+ ...++++++.+..++.+.+... +
T Consensus 72 ~~---~~l~~~~~~~~~~~~d---~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~------------------~-- 125 (233)
T cd02518 72 EE---DVLGRYYQAAEEYNAD---VVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNT------------------L-- 125 (233)
T ss_pred ch---hHHHHHHHHHHHcCCC---EEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecC------------------C--
Confidence 22 2222223333332333 79999999944 3458899987776655544211 1
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhcccCC-CCcchhhH-HHHHhcC-cEEEEEeCc-------eEEecCCHHHHH
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIELKP-TSIEKEVF-PEIAVEN-KLFAMVLPG-------FWMDIGQPKDYI 227 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~-~~~~~~~~-~~l~~~~-~v~~~~~~~-------~~~di~t~~d~~ 227 (256)
+ .+.-...|.-+|+...+..+.... .....+.+ ..+.+.. .+....+.+ ..+|||||+||.
T Consensus 126 -----~----~g~Pv~~~~~~~~~~~~~~l~~~~gd~g~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DiDt~eD~~ 196 (233)
T cd02518 126 -----P----RTYPDGLDVEVFTRDALERAAAEADDPYEREHVTPYIRRHPELFRIGYLEAPPDRLSDLRLTVDTPEDFE 196 (233)
T ss_pred -----C----CCCCCceEEEEEEHHHHHHHHHhCCChhhhcCCCHHHHhChHHeEEeeecCCcccCcCceEecCCHHHHH
Confidence 0 111122345577777776654221 11112222 1122222 233333332 278999999999
Q ss_pred HHHHHHH
Q 046608 228 TGLRLYL 234 (256)
Q Consensus 228 ~a~~~~~ 234 (256)
.++..+.
T Consensus 197 ~~~~~~~ 203 (233)
T cd02518 197 LIKEIYE 203 (233)
T ss_pred HHHHHHH
Confidence 8876654
No 89
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.68 E-value=3.2e-15 Score=117.36 Aligned_cols=174 Identities=16% Similarity=0.223 Sum_probs=108.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCC-cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFAN-KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g-~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
+.+||||||.|+||+. ||++++++| +|+|+|+++.+... +++++|++++. .. . ..+.++...
T Consensus 9 i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~~--~~----~-----~~~~~v~d~ 71 (196)
T PRK00560 9 IPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKDK--KF----E-----FNAPFLLEK 71 (196)
T ss_pred ceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECch--hc----c-----cCCcEEecC
Confidence 4689999999999965 899999999 99999999999987 88999988751 11 1 123333222
Q ss_pred cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeE
Q 046608 80 ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKV 157 (256)
Q Consensus 80 ~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v 157 (256)
.....|+..++..++...+.+ .+++++||+.+ ..+ +.+++. ..+..+ +....+ ++
T Consensus 72 ~~~~~gpl~gi~~~l~~~~~~---~vlv~~~D~P~i~~~~i~~l~~---~~~~~~---------------~~~~~~-~~- 128 (196)
T PRK00560 72 ESDLFSPLFGIINAFLTLQTP---EIFFISVDTPFVSFESIKKLCG---KENFSV---------------TYAKSP-TK- 128 (196)
T ss_pred CCCCCCcHHHHHHHHHhcCCC---eEEEEecCcCcCCHHHHHHHHh---cCCCCE---------------EEEccC-Cc-
Confidence 334557777777776666554 79999999954 433 455522 111111 111111 11
Q ss_pred eEEeecCCCCCCCeEEEEEEEeCHhhHHhccc----CCCCcchhhHHHHHhcCcEEEEEeCc--eEEecCCHHHHHHHHH
Q 046608 158 EKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL----KPTSIEKEVFPEIAVENKLFAMVLPG--FWMDIGQPKDYITGLR 231 (256)
Q Consensus 158 ~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~----~~~~~~~~~~~~l~~~~~v~~~~~~~--~~~di~t~~d~~~a~~ 231 (256)
..--+.+|+++.+..+.. +... +..+++...+..+.+.+ .|.|||||+||.++.+
T Consensus 129 --------------~~Pl~al~~~~~~~~l~~~l~~~~~~-----~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~ 189 (196)
T PRK00560 129 --------------EHYLISLWHQSLLNALIYALKTQNYR-----LSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQ 189 (196)
T ss_pred --------------eeeeEEEEcHHHHHHHHHHHHhCCcc-----HHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHH
Confidence 001135788887776542 2111 12233333455555544 5789999999998876
Q ss_pred HH
Q 046608 232 LY 233 (256)
Q Consensus 232 ~~ 233 (256)
.+
T Consensus 190 ~~ 191 (196)
T PRK00560 190 IL 191 (196)
T ss_pred HH
Confidence 54
No 90
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=6.8e-15 Score=112.36 Aligned_cols=205 Identities=18% Similarity=0.173 Sum_probs=143.2
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEe-ecc
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITC-SQE 80 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~-~~~ 80 (256)
|||||.|.++|... |.+.+++|+|||.|.|+.+.+++ +++|+|.+ +.+.|.+..+++ |.++.+ .+.
T Consensus 6 AiIpAR~gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~y----gak~~~~Rp~ 73 (228)
T COG1083 6 AIIPARGGSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKKY----GAKVFLKRPK 73 (228)
T ss_pred EEEeccCCCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHHh----CccccccCCh
Confidence 89999999999976 99999999999999999999998 78888877 677777777766 555532 222
Q ss_pred CCcCCCc---HHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCC
Q 046608 81 TEPLGTA---GPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMG 155 (256)
Q Consensus 81 ~~~~g~~---~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~ 155 (256)
.-..+++ .++.++++....+.+ .++++.+.... ..++++.++.+..++.+.++.+++-+......... .+ |
T Consensus 74 ~LA~D~ast~~~~lh~le~~~~~~~-~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~--~~-~ 149 (228)
T COG1083 74 ELASDRASTIDAALHALESFNIDED-TLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSL--NN-G 149 (228)
T ss_pred hhccCchhHHHHHHHHHHHhccccC-eeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecccchHHHHHh--cC-C
Confidence 2233333 455677776665432 68888888833 45699999999998899888888776543222221 22 5
Q ss_pred eEeEEeecCC-----C--CCCCeEEEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHH
Q 046608 156 KVEKFVEKPK-----N--FVGNKINAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYI 227 (256)
Q Consensus 156 ~v~~~~ek~~-----~--~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~ 227 (256)
.|..+.+.+. + +.....++.+|+++++.|..-. .-| ..+...|.++. ..+||||+.|+.
T Consensus 150 ~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~---~~f----------~~~~~~y~m~~~~~~DID~~~Dl~ 216 (228)
T COG1083 150 EVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEND---CFF----------IPNTILYEMPEDESIDIDTELDLE 216 (228)
T ss_pred ceeecccCCccccccccchhhhhhcCcEEEehHHHHhhcC---cee----------cCCceEEEcCcccccccccHHhHH
Confidence 5666655542 1 1123557779999998887622 111 13445666655 578999999999
Q ss_pred HHHHHHHhh
Q 046608 228 TGLRLYLDF 236 (256)
Q Consensus 228 ~a~~~~~~~ 236 (256)
.|+..+..+
T Consensus 217 iae~l~~~~ 225 (228)
T COG1083 217 IAENLIFLK 225 (228)
T ss_pred HHHHHhhhh
Confidence 998877554
No 91
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.65 E-value=5.9e-15 Score=114.57 Aligned_cols=110 Identities=20% Similarity=0.327 Sum_probs=79.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||+|+|| . +|+|++++|+||++|+++.|.... +.++|+...+.+. +. .++.+++.-.
T Consensus 5 ~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~-~~vvi~~~~~~~~---~~-----~~g~~vv~D~- 68 (192)
T COG0746 5 MTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQV-DVVVISANRNQGR---YA-----EFGLPVVPDE- 68 (192)
T ss_pred ceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccC-CEEEEeCCCchhh---hh-----ccCCceeecC-
Confidence 68999999999999 5 799999999999999999999984 4444444333221 11 1255554322
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHHHHhcC
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEFHRGHG 129 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~~~~~~ 129 (256)
....|...+++.|+...+.+ ++++++||+.+ ..+ +..+++...+.+
T Consensus 69 ~~~~GPL~Gi~~al~~~~~~---~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 69 LPGFGPLAGILAALRHFGTE---WVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCCCCCHHHHHHHHHhCCCC---eEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 22339999999999999966 89999999954 333 566666544444
No 92
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.63 E-value=1.9e-14 Score=123.60 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=79.3
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
|.+||||||.|+||+. +|+|++++|+|||+|+++.+... +++++|++++.... .+.. .+++++...
T Consensus 175 i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~~~---~~~~----~~v~~i~d~- 240 (369)
T PRK14490 175 LSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQAE---QYRS----FGIPLITDS- 240 (369)
T ss_pred ceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCchhh---HHhh----cCCcEEeCC-
Confidence 4689999999999965 89999999999999999999875 78888877654221 1222 256665433
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-cc-chHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EY-PLKQMIEF 124 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~-~~~~~~~~ 124 (256)
....|...++..++...+.+ .++++.||+.+ .. .+..+++.
T Consensus 241 ~~~~Gpl~gi~~al~~~~~~---~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 241 YLDIGPLGGLLSAQRHHPDA---AWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CCCCCcHHHHHHHHHhCCCC---cEEEEeCCcCCCCHHHHHHHHHh
Confidence 33568889999988876654 69999999944 43 36666653
No 93
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.59 E-value=6.6e-14 Score=118.19 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=79.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.+||||||.|+||+. +|.|++++|+||++|+++.+... +++++|++++... . ... ...+.++...
T Consensus 161 i~~IILAGGkSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~~--~-~~~----~~~v~~I~D~- 226 (346)
T PRK14500 161 LYGLVLTGGKSRRMGK-----DKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQW--Q-GTP----LENLPTLPDR- 226 (346)
T ss_pred ceEEEEeccccccCCC-----CcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchHh--h-hcc----ccCCeEEeCC-
Confidence 3689999999999965 99999999999999999998876 7889888754321 1 100 0033444333
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHHH
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEFH 125 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~~ 125 (256)
....|...+++.++...+.+ .++++.||+.+ +.+ +..+++.+
T Consensus 227 ~~~~GPlagI~aaL~~~~~~---~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 227 GESVGPISGILTALQSYPGV---NWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCCCChHHHHHHHHHhCCCC---CEEEEECCcCCCCHHHHHHHHHhh
Confidence 34579999999999987654 68999999954 433 66777754
No 94
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.40 E-value=2.3e-13 Score=111.27 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=96.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeC---CcchHHHHHHHHHH--------cCCCEEEEEccCChHHHHHHHHhhhhc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKA--------VGVTEVVLAINYQPEVMLNFLKEFEKK 70 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~---g~pli~~~l~~l~~--------~~i~~i~vv~~~~~~~i~~~~~~~~~~ 70 (256)
-+|+||||.||||+. ..||+|+|++ |+|++++.++++.. .++..+++.+.+..+.+.+++++....
T Consensus 2 a~viLaGG~GtRLg~---~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~ 78 (266)
T cd04180 2 AVVLLAGGLGTRLGK---DGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQK 78 (266)
T ss_pred EEEEECCCCccccCC---CCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCC
Confidence 478999999999974 7899999999 99999999999986 246666666667788899999885412
Q ss_pred cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEE------EecCCCcC
Q 046608 71 LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMV------TKVDEPSK 144 (256)
Q Consensus 71 ~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~ 144 (256)
.+..+.+..+..+..+.++.....+.... ++...-+||.+.......+++.+.+.+...+.+. ....+|..
T Consensus 79 ~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~---~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~ 155 (266)
T cd04180 79 NSYVITFMQGKLPLKNDDDARDPHNKTKC---HLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLF 155 (266)
T ss_pred CCceEEEEeCCceEEeCCCCcccCCCCce---eeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHH
Confidence 22333333333344444433321111111 1455666666554444556666666665432222 12224555
Q ss_pred ceeEEEcCCCCeEeEEeecCC
Q 046608 145 YGVVVMEETMGKVEKFVEKPK 165 (256)
Q Consensus 145 ~~~v~~~~~~~~v~~~~ek~~ 165 (256)
+|++..+.. +.+..+.+|+.
T Consensus 156 lG~~~~~~~-~~~~kvv~K~~ 175 (266)
T cd04180 156 IGIAIQNRK-AINQKVVPKTR 175 (266)
T ss_pred HHHHHHcCC-CEEEEEEECCC
Confidence 665555444 56666666654
No 95
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=99.30 E-value=5.4e-11 Score=94.94 Aligned_cols=116 Identities=23% Similarity=0.263 Sum_probs=86.1
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
|||+|.|.++|+.. |+|.+++|+|||.|+++++.+++ +++|+|.| +.+.+.+.+.++ ++.+......
T Consensus 2 aiIpAR~gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~~----g~~v~~~~~~ 69 (217)
T PF02348_consen 2 AIIPARGGSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEEY----GAKVIFRRGS 69 (217)
T ss_dssp EEEEE-SSSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHHT----TSEEEE--TT
T ss_pred EEEecCCCCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHHc----CCeeEEcChh
Confidence 89999999999988 99999999999999999999996 79999888 666777777766 5667666555
Q ss_pred CcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-c-cchHHHHHHHHhcCCc
Q 046608 82 EPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-E-YPLKQMIEFHRGHGGE 131 (256)
Q Consensus 82 ~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~-~~~~~~~~~~~~~~~~ 131 (256)
...++ .+...+......+..+.++.+.||..+ + ..+.++++.+.+...+
T Consensus 70 ~~~~~-~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 70 LADDT-DRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp SSSHH-HHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred hcCCc-ccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 44444 344444444443333378999999944 3 4589999988888765
No 96
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.19 E-value=9.9e-10 Score=92.21 Aligned_cols=183 Identities=21% Similarity=0.274 Sum_probs=114.8
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeC---CcchHHHHHHHHHHcC-----------CCEEEEEcc-CChHHHHHHHH
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAVG-----------VTEVVLAIN-YQPEVMLNFLK 65 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~---g~pli~~~l~~l~~~~-----------i~~i~vv~~-~~~~~i~~~~~ 65 (256)
|.+||||||.||||+. ..||+|+|++ |+|++++.++++.... .-.+++.++ +..+.+.++++
T Consensus 16 va~viLaGG~GTRLg~---~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~~~ 92 (323)
T cd04193 16 VAVLLLAGGQGTRLGF---DGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFK 92 (323)
T ss_pred EEEEEECCCcccccCC---CCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHHHH
Confidence 4689999999999954 7899999997 7999999999998842 124567777 66888999998
Q ss_pred hhhhccCc---EEEeecc---------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCeeccc
Q 046608 66 EFEKKLEI---KITCSQE---------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVISEY 116 (256)
Q Consensus 66 ~~~~~~~~---~v~~~~~---------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~~~~ 116 (256)
+. +.+|+ ++.+..| +.+.|.++-+.. .++.+...+-+++.+...|.+.-.
T Consensus 93 ~~-~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~ 171 (323)
T cd04193 93 EN-NYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVK 171 (323)
T ss_pred hC-CcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccc
Confidence 62 33344 4443333 235555543332 234444433448999999995432
Q ss_pred ch-HHHHHHHHhcCCceEEEEEecCCC-cCceeEEE-cCCCCeEeEEeecCCCC------CCC----eEEEEEEEeCHhh
Q 046608 117 PL-KQMIEFHRGHGGEASIMVTKVDEP-SKYGVVVM-EETMGKVEKFVEKPKNF------VGN----KINAGIYLLNPSV 183 (256)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~-~~~~~~v~~~~ek~~~~------~~~----~~~~Giy~~~~~~ 183 (256)
.. -.++..+.+++.+..+-+++...+ ..-|.+.. |.. -.|.++.+-|... .+. ..|+.+.+|+-++
T Consensus 172 ~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~-~~vvEysel~~~~~~~~~~~g~l~f~~~ni~~~~fsl~f 250 (323)
T cd04193 172 VADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGK-PQVVEYSEISDELAEKRDADGELQYNAGNIANHFFSLDF 250 (323)
T ss_pred ccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCe-EEEEEeecCCHHHHhccCcCCcEecccchHhhheeCHHH
Confidence 22 355667777888888877666544 34454433 322 3456666654311 111 2233455677777
Q ss_pred HHhcc
Q 046608 184 LDRIE 188 (256)
Q Consensus 184 ~~~l~ 188 (256)
++.+.
T Consensus 251 l~~~~ 255 (323)
T cd04193 251 LEKAA 255 (323)
T ss_pred HHHHH
Confidence 76653
No 97
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=99.13 E-value=5.1e-09 Score=91.80 Aligned_cols=183 Identities=20% Similarity=0.300 Sum_probs=112.7
Q ss_pred CeEEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHHc--------------CCCEEEEEccCChHHHHHH
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV--------------GVTEVVLAINYQPEVMLNF 63 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~~--------------~i~~i~vv~~~~~~~i~~~ 63 (256)
|.+||||||.||||+. ..||+|++| .|+|++++.++++... .+.-+++.+.+..+.+.++
T Consensus 107 vavViLAGG~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~ 183 (482)
T PTZ00339 107 VAVLILAGGLGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQF 183 (482)
T ss_pred eEEEEECCCCcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHH
Confidence 4689999999999975 889999999 4899999999999875 1343444445668888899
Q ss_pred HHhhhhccCc---EEEeecc----------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCee
Q 046608 64 LKEFEKKLEI---KITCSQE----------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVI 113 (256)
Q Consensus 64 ~~~~~~~~~~---~v~~~~~----------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~ 113 (256)
+++. ..+|+ .+.+..| +.+.|+++-+.. .++.+...+-+++.+...|.+
T Consensus 184 f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~ 262 (482)
T PTZ00339 184 LEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNI 262 (482)
T ss_pred HHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcc
Confidence 8753 22222 2222222 134555543332 134454444448999999996
Q ss_pred cccch-HHHHHHHHhcCC-ceEEEEEecCCCcCceeEEEcCCCCeEeEEeecCCC------C-CC----CeEEEEEEEeC
Q 046608 114 SEYPL-KQMIEFHRGHGG-EASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKN------F-VG----NKINAGIYLLN 180 (256)
Q Consensus 114 ~~~~~-~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~ek~~~------~-~~----~~~~~Giy~~~ 180 (256)
.-... -.++.+....+. ++...+.+......-|.+....+.-.|.++.|-+.. . .+ ...++...+|+
T Consensus 263 L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fs 342 (482)
T PTZ00339 263 LAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNICSHIFS 342 (482)
T ss_pred cccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceEEEEEE
Confidence 54322 344555566666 665555544333445655433221257777774321 1 11 25678889999
Q ss_pred HhhHHhc
Q 046608 181 PSVLDRI 187 (256)
Q Consensus 181 ~~~~~~l 187 (256)
-++++.+
T Consensus 343 l~fl~~~ 349 (482)
T PTZ00339 343 LDFLKKV 349 (482)
T ss_pred HHHHHHH
Confidence 8888754
No 98
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.11 E-value=1.7e-09 Score=83.60 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCCccceeCC--cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhc
Q 046608 21 VPKPLVDFAN--KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (256)
Q Consensus 21 ~pK~ll~i~g--~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~ 98 (256)
.+|+|++++| +|||+|+++.+.. .+++++|++++... ... .+++++. ......|...++..++....
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~-~~~~iivv~~~~~~-----~~~----~~~~~i~-d~~~g~gpl~~~~~gl~~~~ 71 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQ-RCAPVFVMAAPGQP-----LPE----LPAPVLR-DELRGLGPLPATGRGLRAAA 71 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhh-cCCEEEEECCCCcc-----ccc----CCCCEec-cCCCCCCcHHHHHHHHHHHH
Confidence 4899999999 9999999998775 48999999976421 111 1344442 33445677777776676542
Q ss_pred CCCCCcEEEEeCCeec-ccc-hHHHHHHHH
Q 046608 99 DDSGEPFFVLNSDVIS-EYP-LKQMIEFHR 126 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~-~~~-~~~~~~~~~ 126 (256)
....++++++.||+.+ +.+ +.++++.+.
T Consensus 72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 72 EAGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred hcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 1112289999999944 433 667776543
No 99
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.82 E-value=1.3e-06 Score=72.38 Aligned_cols=222 Identities=18% Similarity=0.282 Sum_probs=134.7
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHHc----CC-CEEEEEccCC-hHHHHHHHHhhhhccCcE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----GV-TEVVLAINYQ-PEVMLNFLKEFEKKLEIK 74 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~~----~i-~~i~vv~~~~-~~~i~~~~~~~~~~~~~~ 74 (256)
-+|+||||.||||+- ..||.++|+ .|+++++..+++++.. +. -..+|.++.. ++.+.++++++.. ....
T Consensus 5 avl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~-~~~~ 80 (300)
T cd00897 5 VVLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG-VNVD 80 (300)
T ss_pred EEEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC-CccC
Confidence 368889999999977 789999999 7889999999888653 31 2456666655 6778888887542 1122
Q ss_pred EEeecc------------------------CCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCeecccch-HHHHHH
Q 046608 75 ITCSQE------------------------TEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISEYPL-KQMIEF 124 (256)
Q Consensus 75 v~~~~~------------------------~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~~~~~~-~~~~~~ 124 (256)
+.+..| +.+.|.++-+... ++.+...+-+++.+...|++.. .. -.++.+
T Consensus 81 v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a-~~Dp~~lg~ 159 (300)
T cd00897 81 IHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGA-TVDLRILNH 159 (300)
T ss_pred eEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccc-cCCHHHHHH
Confidence 221111 2344554433221 2334333344899999999532 23 356677
Q ss_pred HHhcCCceEEEEEecCCCc-CceeEEE-cCCCCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhHHhcccC----
Q 046608 125 HRGHGGEASIMVTKVDEPS-KYGVVVM-EETMGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRIELK---- 190 (256)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~~-~~~~v~~-~~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~~l~~~---- 190 (256)
+..++++.++=+++...+. .-|.+.. +.. -+|.++.+-|... .-...+++..+++-++++.+.+.
T Consensus 160 ~~~~~~~~~~evv~Kt~~dek~G~l~~~~g~-~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~~~~~~~ 238 (300)
T cd00897 160 MVDNKAEYIMEVTDKTRADVKGGTLIQYEGK-LRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVVEENALD 238 (300)
T ss_pred HHhcCCceEEEEeecCCCCCcccEEEEECCE-EEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHHHhccCC
Confidence 7888888888666654443 4454433 322 3567777765421 12377899999998887765210
Q ss_pred ---------------CCCcch---hhHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHHHHH
Q 046608 191 ---------------PTSIEK---EVFPEIAVENKLFAMVLPG-FWMDIGQPKDYITGLRL 232 (256)
Q Consensus 191 ---------------~~~~~~---~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~~a~~~ 232 (256)
...+|. ++++.. ....++.+.- .|..+.+.+|++-.+..
T Consensus 239 lp~h~~~K~v~p~~~~~qlE~~i~da~~~~---~~~~~~eV~R~rF~PvKn~~dll~~~sd 296 (300)
T cd00897 239 LEIIVNPKTVDGGLNVIQLETAVGAAIKNF---DNALGVNVPRSRFLPVKTTSDLLLVRSD 296 (300)
T ss_pred CCeeecccccCCCCCEEEeHhHhhhHHHhC---CCcEEEEEChhhcCCCCChHHHHhhhhc
Confidence 011222 233222 2333444332 58899999999866543
No 100
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.76 E-value=1.5e-06 Score=75.85 Aligned_cols=230 Identities=16% Similarity=0.237 Sum_probs=139.2
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHHc----CC-CEEEEEccCC-hHHHHHHHHhhhhccCcE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----GV-TEVVLAINYQ-PEVMLNFLKEFEKKLEIK 74 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~~----~i-~~i~vv~~~~-~~~i~~~~~~~~~~~~~~ 74 (256)
-+|+||||.||||+. ..||.++++ .|+++++..++++... |. -..++.++.. ++.+.++++++. .++.+
T Consensus 81 avlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~-~~~~~ 156 (469)
T PLN02474 81 VVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT-NSNIE 156 (469)
T ss_pred EEEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC-CCccc
Confidence 368889999999998 789999999 7899999888877554 32 2346666655 677888888753 22334
Q ss_pred EEeecc------------------------CCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCeecccch-HHHHHH
Q 046608 75 ITCSQE------------------------TEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISEYPL-KQMIEF 124 (256)
Q Consensus 75 v~~~~~------------------------~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~~~~~~-~~~~~~ 124 (256)
+.+..| +.+.|.++-+... ++.+...+-+++.+...|++-. .+ -.++.+
T Consensus 157 i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga-~vDp~~lg~ 235 (469)
T PLN02474 157 IHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGA-IVDLKILNH 235 (469)
T ss_pred eEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCcccc-ccCHHHHHH
Confidence 432222 2344554433211 3444444445899999999532 22 356677
Q ss_pred HHhcCCceEEEEEecCCCc-CceeEE-EcCCCCeEeEEeecCCCC--------CCCeEEEEEEEeCHhhHHhcccC----
Q 046608 125 HRGHGGEASIMVTKVDEPS-KYGVVV-MEETMGKVEKFVEKPKNF--------VGNKINAGIYLLNPSVLDRIELK---- 190 (256)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~~-~~~~v~-~~~~~~~v~~~~ek~~~~--------~~~~~~~Giy~~~~~~~~~l~~~---- 190 (256)
+..++++.++=+++...+. .-|.+. .+.. -++.++.+-|... .-...|++.++|+-++++.+.+.
T Consensus 236 ~~~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk-~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~~~~~l~ 314 (469)
T PLN02474 236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGK-VQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALK 314 (469)
T ss_pred HHhcCCceEEEEeecCCCCCCccEEEEECCE-EEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHhhcCCCC
Confidence 7778888887666544332 234443 2322 2467777755421 12378999999999888876211
Q ss_pred ------C--------CCcchhhHHHHHhcCcEEEEEeCc-eEEecCCHHHHHHHHHHHHhhh
Q 046608 191 ------P--------TSIEKEVFPEIAVENKLFAMVLPG-FWMDIGQPKDYITGLRLYLDFL 237 (256)
Q Consensus 191 ------~--------~~~~~~~~~~l~~~~~v~~~~~~~-~~~di~t~~d~~~a~~~~~~~~ 237 (256)
. ..+|.-+...+-.-....++.+.- .|..|.+.+|++.++..+....
T Consensus 315 ~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~ 376 (469)
T PLN02474 315 MEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLV 376 (469)
T ss_pred ceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhc
Confidence 0 011111111111112233344332 5889999999999988776543
No 101
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.75 E-value=8.5e-08 Score=74.19 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=84.0
Q ss_pred EEEE-eCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC-CCEEEEEccCC--hHHHHHHHHhhhhccCcEEEee
Q 046608 3 ALIL-VGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG-VTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 3 aiIl-aaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~-i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~ 78 (256)
++|+ |.=.+|||.+ |.|+|++++|||.++|++++.+. +++++|.|+.. .+.+++++.+. |+.+.
T Consensus 5 ~~IiQARmgStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~----G~~vf-- 72 (241)
T COG1861 5 LVIIQARMGSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH----GFYVF-- 72 (241)
T ss_pred EEEeeecccCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc----CeeEe--
Confidence 4455 4556788877 99999999999999999999996 78999999755 34455666543 55553
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHHHHhcCCce
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~~~~~~~~~ 132 (256)
+.....-...+..+.+..+.+ .++=++||..+ +.. ++.+++.+.++++|-
T Consensus 73 -rGs~~dVL~Rf~~a~~a~~~~---~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 73 -RGSEEDVLQRFIIAIKAYSAD---VVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred -cCCHHHHHHHHHHHHHhcCCC---eEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 222223456677888888877 79999999944 333 688899888888764
No 102
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.64 E-value=8.9e-06 Score=70.74 Aligned_cols=225 Identities=21% Similarity=0.264 Sum_probs=126.8
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHHc----C-CCEEEEEccCC-hHHHHHHHHhhhhccCcE
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----G-VTEVVLAINYQ-PEVMLNFLKEFEKKLEIK 74 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~~----~-i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~ 74 (256)
-+|+||||.||||+. ..||.++++ .|+++++..++++... + .-..+|.++.. .+.+.+++++|. ..+.+
T Consensus 58 avl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyf-g~~~~ 133 (420)
T PF01704_consen 58 AVLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYF-GLDVD 133 (420)
T ss_dssp EEEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGC-GSSCC
T ss_pred EEEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhc-CCCcc
Confidence 367799999999987 789999999 7788999888877652 3 22455666554 788889998743 12222
Q ss_pred EEeecc--------------------------CCcCCCcHHHH--H---HHhhhcCCCCCcEEEEeCCeecccch-HHHH
Q 046608 75 ITCSQE--------------------------TEPLGTAGPLA--L---ARDKLIDDSGEPFFVLNSDVISEYPL-KQMI 122 (256)
Q Consensus 75 v~~~~~--------------------------~~~~g~~~s~~--~---~~~~i~~~~~~~~lv~~~D~~~~~~~-~~~~ 122 (256)
+.+..| +.+.|.++-+. . .++.+...+-+++.+...|.+. ... -.++
T Consensus 134 v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~-a~~Dp~~l 212 (420)
T PF01704_consen 134 VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLG-AVVDPVFL 212 (420)
T ss_dssp EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT--TT-HHHH
T ss_pred eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcc-cccCHHHH
Confidence 322211 01335554222 1 2234433333489999999933 233 3567
Q ss_pred HHHHhcCCceEEEEEecCCC-cCceeEEEcCCCC--eEeEEeecCCC--------CCCCeEEEEEEEeCHhhHHhcccC-
Q 046608 123 EFHRGHGGEASIMVTKVDEP-SKYGVVVMEETMG--KVEKFVEKPKN--------FVGNKINAGIYLLNPSVLDRIELK- 190 (256)
Q Consensus 123 ~~~~~~~~~~~i~~~~~~~~-~~~~~v~~~~~~~--~v~~~~ek~~~--------~~~~~~~~Giy~~~~~~~~~l~~~- 190 (256)
..+.+++.+..+-+++...+ ..-|.+... + | .|.++.+-|.. ......++|-.+++-++++.+.+.
T Consensus 213 G~~~~~~~~~~~evv~Kt~~dek~Gvl~~~-~-G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~~~~~ 290 (420)
T PF01704_consen 213 GYMIEKNADFGMEVVPKTSPDEKGGVLCRY-D-GKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRLLERD 290 (420)
T ss_dssp HHHHHTT-SEEEEEEE-CSTTTSSEEEEEE-T-TEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHHHHTT
T ss_pred HHHHhccchhheeeeecCCCCCceeEEEEe-C-CccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHHHHhc
Confidence 77778888888877776554 334544432 3 4 45566554431 112367888889998888865321
Q ss_pred C---------------------CCcchhhHHHHHhcCcEEEEEeC-ceEEecCCHHHHHHHHHHH
Q 046608 191 P---------------------TSIEKEVFPEIAVENKLFAMVLP-GFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 191 ~---------------------~~~~~~~~~~l~~~~~v~~~~~~-~~~~di~t~~d~~~a~~~~ 233 (256)
. ..++..+...+-.-....++.+. ..|..+.+..||+..+..+
T Consensus 291 ~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd~ 355 (420)
T PF01704_consen 291 ELQLPIHVAKKKIPYVDNGIKVIQFETAIGFAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSDL 355 (420)
T ss_dssp TCCS-EEEEEEESSEECTEEEEEEEECGGGGGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHSTT
T ss_pred cccCccEEcchhcccccCCccEEeehhhhhchHhhccCcEEEEEcHHHcCCccccCcceeeccce
Confidence 0 11211111111111223333333 5799999999999776543
No 103
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=98.48 E-value=5.7e-06 Score=64.86 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=60.3
Q ss_pred cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeC
Q 046608 31 KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNS 110 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~ 110 (256)
+|||+|+++.+...++++++++++. +.+.++... .++.++. +.. .|.+.++..+++.+..+. +.++++.|
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~~v~~i~--~~~-~G~~~si~~al~~~~~~~-~~vlv~~~ 99 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----LGAPVLR--DPG-PGLNNALNAALAEAREPG-GAVLILMA 99 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----cCCEEEe--cCC-CCHHHHHHHHHHHhhccC-CeEEEEeC
Confidence 5899999999999877888888863 344444332 2565543 332 388999999998875431 27999999
Q ss_pred Ceec--ccchHHHHHHHH
Q 046608 111 DVIS--EYPLKQMIEFHR 126 (256)
Q Consensus 111 D~~~--~~~~~~~~~~~~ 126 (256)
|+.+ ...++++++.+.
T Consensus 100 D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 100 DLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCHHHHHHHHHhcc
Confidence 9943 345788877553
No 104
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.35 E-value=3.6e-05 Score=67.81 Aligned_cols=180 Identities=22% Similarity=0.272 Sum_probs=111.7
Q ss_pred EEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHHc--------------CC-CEEEEEccCC-hHHHHHH
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV--------------GV-TEVVLAINYQ-PEVMLNF 63 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~~--------------~i-~~i~vv~~~~-~~~i~~~ 63 (256)
+|+||||.||||+- ..||.+++| .++++++...+++... +. -..+|.++.. .+.+.++
T Consensus 119 vvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~f 195 (493)
T PLN02435 119 VVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRKF 195 (493)
T ss_pred EEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHHH
Confidence 67789999999988 789999988 5899999888876331 11 1346667655 6778888
Q ss_pred HHhhhhccCc---EEEeecc---------------------CCcCCCcHHHHH-----HHhhhcCCCCCcEEEEeCCeec
Q 046608 64 LKEFEKKLEI---KITCSQE---------------------TEPLGTAGPLAL-----ARDKLIDDSGEPFFVLNSDVIS 114 (256)
Q Consensus 64 ~~~~~~~~~~---~v~~~~~---------------------~~~~g~~~s~~~-----~~~~i~~~~~~~~lv~~~D~~~ 114 (256)
+++. ..+|. .+.+..| +.+.|+++-+.. .++.+...+-+++.+...|.+.
T Consensus 196 f~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 196 FESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred HHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 8763 22222 2333222 245566543321 2344444444488999999954
Q ss_pred ccch-HHHHHHHHhcCCceEEEEEecCCC-cCceeEEE-cCCCC--eEeEEeecCC------CC-CC----CeEEEEEEE
Q 046608 115 EYPL-KQMIEFHRGHGGEASIMVTKVDEP-SKYGVVVM-EETMG--KVEKFVEKPK------NF-VG----NKINAGIYL 178 (256)
Q Consensus 115 ~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~v~~-~~~~~--~v~~~~ek~~------~~-~~----~~~~~Giy~ 178 (256)
-... -.++.....++.++.+-+++..++ ..-|.+.. +.+ | .|.++.|-+. +. .+ ...+++.++
T Consensus 275 ~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~-g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~ 353 (493)
T PLN02435 275 VRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG-GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHM 353 (493)
T ss_pred ccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC-CCEEEEEeccCCHHHHhccCccccccccchhhHHHhh
Confidence 3222 355667777888888876655444 33465543 233 3 4667766432 11 12 356788899
Q ss_pred eCHhhHHhc
Q 046608 179 LNPSVLDRI 187 (256)
Q Consensus 179 ~~~~~~~~l 187 (256)
|+-++++.+
T Consensus 354 fs~~fL~~~ 362 (493)
T PLN02435 354 FTLDFLNQV 362 (493)
T ss_pred ccHHHHHHH
Confidence 999998876
No 105
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=5.5e-05 Score=65.41 Aligned_cols=181 Identities=23% Similarity=0.255 Sum_probs=111.5
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeC-CcchHHHHHHHHHHc----CC-CEEEEEccCChHHHHHHHHh--hhhccCc
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFA-NKPMILHQIEALKAV----GV-TEVVLAINYQPEVMLNFLKE--FEKKLEI 73 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~-g~pli~~~l~~l~~~----~i-~~i~vv~~~~~~~i~~~~~~--~~~~~~~ 73 (256)
.+|+||||+|+||+. ..||.+++|. |+++++.+.++++.+ ++ -..++.++.+.++...++.. |..--..
T Consensus 107 Avl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~~~k~ 183 (472)
T COG4284 107 AVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFGLDKE 183 (472)
T ss_pred EEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcCCCHH
Confidence 478899999999998 7899999997 999999998887655 32 24556666666566655543 2110011
Q ss_pred EEEeec-----------------------cCCcCCCcH---HHHH--HHhhhcCCCCCcEEEEeCCeecccch-HHHHHH
Q 046608 74 KITCSQ-----------------------ETEPLGTAG---PLAL--ARDKLIDDSGEPFFVLNSDVISEYPL-KQMIEF 124 (256)
Q Consensus 74 ~v~~~~-----------------------~~~~~g~~~---s~~~--~~~~i~~~~~~~~lv~~~D~~~~~~~-~~~~~~ 124 (256)
++.+.. .+-+.|+++ ++.. ..+.+...+-+.+.|.+.|. ....+ ..++.+
T Consensus 184 ~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~ 262 (472)
T COG4284 184 DIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGF 262 (472)
T ss_pred HeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccc-cccccCHHHHHH
Confidence 111111 123445543 3332 33334343344899999999 33233 356677
Q ss_pred HHhcCCceEEEEEecCCC-cCceeEE-EcCCCCeEeEEeecCCCC------CC----CeEE-EEEEEeCHhhHHhc
Q 046608 125 HRGHGGEASIMVTKVDEP-SKYGVVV-MEETMGKVEKFVEKPKNF------VG----NKIN-AGIYLLNPSVLDRI 187 (256)
Q Consensus 125 ~~~~~~~~~i~~~~~~~~-~~~~~v~-~~~~~~~v~~~~ek~~~~------~~----~~~~-~Giy~~~~~~~~~l 187 (256)
+..++.+.++=++....+ ..-|.+. .++. -+|.++.+-|... .+ ...+ .++++++-+++...
T Consensus 263 ~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~~g~-~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~~~~l~~~ 337 (472)
T COG4284 263 MAETNYEYLMETTDKTKADEKVGILVTYDGK-LRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFSVKFLKEA 337 (472)
T ss_pred HHhcCcceeEEEeecccccccceEEEEeCCc-eEEEEEecCChhHhhhhccccceeeeccccceeehhHHHHHHhh
Confidence 778888888877664433 4556655 6655 6788888877631 11 1333 67777777766643
No 106
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=98.25 E-value=6.1e-05 Score=62.84 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=107.4
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHHcC---------CCEEEEEccCC-hHHHHHHHHhhh
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAVG---------VTEVVLAINYQ-PEVMLNFLKEFE 68 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~~~---------i~~i~vv~~~~-~~~i~~~~~~~~ 68 (256)
-+|+||||.|+||+- ..||.++++ .|+++++..++++.... .-..+|.++.. ++.+.+++++..
T Consensus 2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~ 78 (315)
T cd06424 2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN 78 (315)
T ss_pred EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC
Confidence 368899999999987 789999999 58999999988876531 12456777655 677888887532
Q ss_pred hccC---cEEEeec------------------------cCCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCeeccc
Q 046608 69 KKLE---IKITCSQ------------------------ETEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVISEY 116 (256)
Q Consensus 69 ~~~~---~~v~~~~------------------------~~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~~~~ 116 (256)
.+| .++.+.. .+.+.|.++-.... ++.+...+-+++.+..-|.+.-.
T Consensus 79 -yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 79 -YFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred -ccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 122 1121111 12355555433222 23343443347888888885432
Q ss_pred c-hHHHHHHHHhcCCceEEEEEecCCCcCceeEEE-c-CC-CCeE--eEEeecCC-----C-C------CC----CeEEE
Q 046608 117 P-LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVM-E-ET-MGKV--EKFVEKPK-----N-F------VG----NKINA 174 (256)
Q Consensus 117 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~-~-~~-~~~v--~~~~ek~~-----~-~------~~----~~~~~ 174 (256)
. .-.++-....++.++...+.+......-|.+.. + .+ ...| .++.|-+. . . .. ...|+
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~gNi 237 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFPGNI 237 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCCCee
Confidence 2 234455555677777776666433455665542 1 22 0233 56655431 0 0 11 15688
Q ss_pred EEEEeCHhhHHhc
Q 046608 175 GIYLLNPSVLDRI 187 (256)
Q Consensus 175 Giy~~~~~~~~~l 187 (256)
+.++|+-+.+...
T Consensus 238 ~~~~f~l~~~~~~ 250 (315)
T cd06424 238 NQLVFSLGPYMDE 250 (315)
T ss_pred eeEEEeHHHHHHH
Confidence 8999997776643
No 107
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.99 E-value=0.00056 Score=62.23 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=91.3
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee---CCcchHHHHHHHHHHc-----------C-CCEEEEEccCC-hHHHHHHHH
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF---ANKPMILHQIEALKAV-----------G-VTEVVLAINYQ-PEVMLNFLK 65 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i---~g~pli~~~l~~l~~~-----------~-i~~i~vv~~~~-~~~i~~~~~ 65 (256)
-+|+||||.|+||+- ..||.++|+ .|+++++..++++... + .-..+|.++.. ++.+.++++
T Consensus 130 avllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~ 206 (615)
T PLN02830 130 AFVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLE 206 (615)
T ss_pred EEEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHH
Confidence 367889999999987 779999997 4899999999887654 1 12466777655 677888888
Q ss_pred hhhhccC---cEEEeecc------------------------CCcCCCcHHHHHH-----HhhhcCCCCCcEEEEeCCee
Q 046608 66 EFEKKLE---IKITCSQE------------------------TEPLGTAGPLALA-----RDKLIDDSGEPFFVLNSDVI 113 (256)
Q Consensus 66 ~~~~~~~---~~v~~~~~------------------------~~~~g~~~s~~~~-----~~~i~~~~~~~~lv~~~D~~ 113 (256)
+.. .|| ..+.+..| +.+.|.++-.... ++.+...+-+++.+...|.+
T Consensus 207 ~n~-~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~ 285 (615)
T PLN02830 207 RND-YFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNG 285 (615)
T ss_pred HCC-ccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccch
Confidence 632 222 12222111 1344444332221 23343443348999999993
Q ss_pred c-ccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEE
Q 046608 114 S-EYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVM 150 (256)
Q Consensus 114 ~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~ 150 (256)
. ....-.++.....++.++.+.+++......-|.+..
T Consensus 286 L~~~Adp~flG~~~~~~~d~~~kvv~K~~~E~vGvi~~ 323 (615)
T PLN02830 286 LVFKAIPAALGVSATKGFDMNSLAVPRKAKEAIGAIAK 323 (615)
T ss_pred hhhcccHHHhHHHHhcCCceEEEEEECCCCcccceEEE
Confidence 3 222366777777888888887776633344555543
No 108
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=97.45 E-value=0.0022 Score=48.90 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=64.2
Q ss_pred CeEEEEe---CCCCCccccCC-CCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEE
Q 046608 1 MKALILV---GGFGTRLRPLT-LSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKIT 76 (256)
Q Consensus 1 m~aiIla---aG~g~Rl~~~~-~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~ 76 (256)
|++||+- ++.-||+.|.- .+.-|.+. .-||-.++..+... +.+|.|++... .+..... ..++.
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~-~~~i~Vvtpde--~~~~~a~------~~~vl 67 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV-LGEITVVTPDE--EVLVPAT------KLEVL 67 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh-cCCceEEcCCh--Hhhhhcc------cceee
Confidence 7888884 46778887742 12222222 14888888888876 68888888432 2221111 12232
Q ss_pred eeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHHHH
Q 046608 77 CSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEFHR 126 (256)
Q Consensus 77 ~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~~~ 126 (256)
.+ .+...++..+++.+...+ .++|+++|+ +.++++.++++...
T Consensus 68 --~d---~dLN~Ai~aa~~~~~~p~--~v~vvmaDLPLl~~~~i~~~~~~~~ 112 (210)
T COG1920 68 --AD---PDLNTAINAALDEIPLPS--EVIVVMADLPLLSPEHIERALSAAK 112 (210)
T ss_pred --ec---cchHHHHHHHHhhCCCCc--ceEEEecccccCCHHHHHHHHHhcC
Confidence 11 124467778888776532 599999999 34556888877533
No 109
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=97.24 E-value=0.0041 Score=46.39 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=70.6
Q ss_pred cchHHHHHHHHHHc--CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~--~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
...|..+|+.+.+. ...+|+|+-+...+...+.+.++.. .+..+.+....+..|.+.+...+++....+ +++++
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~---~i~~l 85 (169)
T PF00535_consen 10 AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAKGE---YILFL 85 (169)
T ss_dssp TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH--SS---EEEEE
T ss_pred HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccccccccccccccccccee---EEEEe
Confidence 36788888888776 3567877776555555666665543 123344444444558889999999999887 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcCCceEEEEEe
Q 046608 109 NSDVISEYP-LKQMIEFHRGHGGEASIMVTK 138 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 138 (256)
.+|.....+ +.++++.+.+++.+.++....
T Consensus 86 d~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 86 DDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp ETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 999987766 888999888877766554443
No 110
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.22 E-value=0.0072 Score=44.03 Aligned_cols=90 Identities=19% Similarity=0.223 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
.+++.+.++.+.... ..+++++.+...+...+.+.+.... ...+.........|.+.++..++...+.+ .++++
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d---~v~~~ 84 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAARGE---YILFL 84 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhcCC---EEEEE
Confidence 589999999999987 7788888887777777666654322 12233334556678888898898888655 89999
Q ss_pred eCCeecccc-hHHHHHH
Q 046608 109 NSDVISEYP-LKQMIEF 124 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~ 124 (256)
.+|..+..+ +..++..
T Consensus 85 d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 85 DADDLLLPDWLERLVAE 101 (156)
T ss_pred CCCCccCccHHHHHHHH
Confidence 999988766 4554343
No 111
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=96.91 E-value=0.0018 Score=51.30 Aligned_cols=107 Identities=23% Similarity=0.294 Sum_probs=49.3
Q ss_pred CeEEEEeCCC---CCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEe
Q 046608 1 MKALILVGGF---GTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITC 77 (256)
Q Consensus 1 m~aiIlaaG~---g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~ 77 (256)
|++||+--.. =|||.+.-. -.--.=.-+-|+..++..+.. ++ +++|+... .+.+... ...++.++.
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~---~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d~--~v~~~a~---~~~g~~vl~ 69 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLS---PEEREALALAMLRDVLAALRA--VD-VVVVSRDP--EVAALAR---ARLGAEVLP 69 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS----HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TTTTT------SSEEEE
T ss_pred CeEEEEcCCCCccccccCccCC---HHHHHHHHHHHHHHHHHHHHh--cC-eEEeccch--hhhhhhh---hccCCeEec
Confidence 8899986543 377765210 000000112588999999987 56 77766422 2221111 133677653
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ecccchHHHHHH
Q 046608 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--ISEYPLKQMIEF 124 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~~~~~~~~~~~ 124 (256)
- . ..|.-.++..+....+.. +++++++|+ +...++..++..
T Consensus 70 d--~-~~gLN~Al~~a~~~~~~~---~vlvl~aDLPll~~~dl~~~l~~ 112 (217)
T PF01983_consen 70 D--P-GRGLNAALNAALAAAGDD---PVLVLPADLPLLTPEDLDALLAA 112 (217)
T ss_dssp ------S-HHHHHHHHHH-H--S----EEEE-S--TT--HHHHHHHCT-
T ss_pred C--C-CCCHHHHHHHHHhccCCC---ceEEeecCCccCCHHHHHHHHhc
Confidence 2 2 456667777774444443 799999999 445668888775
No 112
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=96.85 E-value=0.022 Score=43.50 Aligned_cols=113 Identities=16% Similarity=0.223 Sum_probs=74.9
Q ss_pred CcchHHHHHHHHHH-cCC-CEEEEEccCCh---HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCc
Q 046608 30 NKPMILHQIEALKA-VGV-TEVVLAINYQP---EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (256)
Q Consensus 30 g~pli~~~l~~l~~-~~i-~~i~vv~~~~~---~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~ 104 (256)
|.|++-|++..... .+. -++++|-.... ..+.+.+++.+. .-++...+.....|.+.|...++.+...+ .
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg--~d~i~l~pR~~klGLgtAy~hgl~~a~g~---f 91 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYG--EDNILLKPRTKKLGLGTAYIHGLKHATGD---F 91 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhC--CCcEEEEeccCcccchHHHHhhhhhccCC---e
Confidence 44677888776554 344 45666653332 344455544322 22445556778889999999999999886 7
Q ss_pred EEEEeCCeecccc-hHHHHHHHHhcCCceEEEEEecCCCcCcee
Q 046608 105 FFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVTKVDEPSKYGV 147 (256)
Q Consensus 105 ~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 147 (256)
++++++|.-.++. +.++++...+++.|.+..+.-..+..-+||
T Consensus 92 iviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa~~ggV~gW 135 (238)
T KOG2978|consen 92 IVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYAGGGGVYGW 135 (238)
T ss_pred EEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEcCCCceecc
Confidence 8899999865544 788998888888787776655555444543
No 113
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=96.72 E-value=0.023 Score=44.68 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHc------CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 32 PMILHQIEALKAV------GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 32 pli~~~l~~l~~~------~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
..|...|+.+.+. ..-+|+|+-+...+...+.++++....+..+.+.......|.+.++..++.....+ .+
T Consensus 10 ~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~gd---~i 86 (211)
T cd04188 10 KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARGD---YI 86 (211)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhcCC---EE
Confidence 4555556555443 23467777655555555556555433332223334444568889999999988776 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+++++|..++.+ +.++++.....+.++++..
T Consensus 87 ~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 87 LFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 999999977655 7888887556666655543
No 114
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=96.69 E-value=0.037 Score=44.62 Aligned_cols=102 Identities=10% Similarity=0.106 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHcCC----CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 32 PMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 32 pli~~~l~~l~~~~i----~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
-.|..+|+.+..... -+|+||.....+...+.++++......++......+..|.+.++-.++.....+ .++.
T Consensus 14 ~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~gd---~i~~ 90 (241)
T cd06427 14 EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFARGE---YVVI 90 (241)
T ss_pred HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcCCC---EEEE
Confidence 467788888876532 256666655555666666654321234455444444567788888888887665 8999
Q ss_pred EeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 108 LNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 108 ~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+.+|...+++ +.++++.+.+.+.+..++.
T Consensus 91 ~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 91 YDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred EcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 9999987766 7788887765445554443
No 115
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=96.44 E-value=0.063 Score=39.97 Aligned_cols=95 Identities=24% Similarity=0.274 Sum_probs=62.6
Q ss_pred cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
...|..+|+.+.+.. ..+++|+-....+...+.+..+.......+.+....+..|.+.+.-.+++..+.+ .++++
T Consensus 9 ~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~~---~i~~~ 85 (180)
T cd06423 9 EAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGD---IVVVL 85 (180)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCCC---EEEEE
Confidence 357888888887764 4577777665555555555554332222233344556678888888898888665 89999
Q ss_pred eCCeecccc-hHHHHHHHHhc
Q 046608 109 NSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~ 128 (256)
.+|.....+ +.+++..+.+.
T Consensus 86 D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 86 DADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred CCCCCcChHHHHHHHHHhccC
Confidence 999977665 66774554443
No 116
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.35 E-value=0.088 Score=40.84 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=64.1
Q ss_pred ceeCCc---chHHHHHHHHHHcC--CCEEEEEccCC-hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 26 VDFANK---PMILHQIEALKAVG--VTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 26 l~i~g~---pli~~~l~~l~~~~--i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
+|.-+. ..|..+|+.+.... ..+++||.... .+...+.+..+..+.++++. ......|.+.+.-.++...+.
T Consensus 4 ip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i--~~~~n~G~~~a~N~g~~~a~g 81 (201)
T cd04195 4 MSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVV--PLEKNRGLGKALNEGLKHCTY 81 (201)
T ss_pred EEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEE--EcCccccHHHHHHHHHHhcCC
Confidence 455443 27888898887764 35666654433 55566666665544444443 333446888888888887766
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhc
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
+ .++++.+|.+...+ +..+++.+.++
T Consensus 82 d---~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 82 D---WVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred C---EEEEeCCccccCcHHHHHHHHHHHhC
Confidence 5 89999999977665 77888876544
No 117
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=96.06 E-value=0.19 Score=40.49 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=66.4
Q ss_pred cceeC-CcchHHHHHHHHHHcCC----CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 25 LVDFA-NKPMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 25 ll~i~-g~pli~~~l~~l~~~~i----~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
++|.. ....|...|+.+..... -+++|+.....+...+.+.++... ++.++ ......|.+.++..+.+....
T Consensus 34 vip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~v~~i--~~~~~~g~~~a~n~gi~~a~~ 110 (251)
T cd06439 34 IIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK-GVKLL--RFPERRGKAAALNRALALATG 110 (251)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC-cEEEE--EcCCCCChHHHHHHHHHHcCC
Confidence 44443 44577888888766532 267777765555666666655432 34443 344556788888888888876
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhcCCc
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGE 131 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~ 131 (256)
+ .++++.+|.+...+ +.++++.....+.+
T Consensus 111 d---~i~~lD~D~~~~~~~l~~l~~~~~~~~~~ 140 (251)
T cd06439 111 E---IVVFTDANALLDPDALRLLVRHFADPSVG 140 (251)
T ss_pred C---EEEEEccccCcCHHHHHHHHHHhcCCCcc
Confidence 5 89999999977766 78888876544433
No 118
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.04 E-value=0.16 Score=37.70 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=63.3
Q ss_pred CCcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 29 ANKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
+....+..+++.+.... ..+++|+.....+...+.+.+... .+.+ .......|.+.+...+++..+.+ .++
T Consensus 7 ~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~--~~~~--~~~~~~~g~~~a~n~~~~~~~~~---~i~ 79 (166)
T cd04186 7 NSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP--EVRL--IRNGENLGFGAGNNQGIREAKGD---YVL 79 (166)
T ss_pred CCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC--CeEE--EecCCCcChHHHhhHHHhhCCCC---EEE
Confidence 34468889999888763 457777776555555555655422 2333 34445678888888898888655 889
Q ss_pred EEeCCeecccc-hHHHHHHHHhcC
Q 046608 107 VLNSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
++.+|..+..+ +..+++.+....
T Consensus 80 ~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 80 LLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred EECCCcEECccHHHHHHHHHHhCC
Confidence 99999977665 777777655443
No 119
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.02 E-value=0.11 Score=40.52 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=61.2
Q ss_pred cchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
...|...|+.+.+... -+|+|+-....+...+.++.+..+.+..+.+.......|.+.++..++...+.+ .++++
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g~---~v~~l 86 (214)
T cd04196 10 EKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADGD---YVFFC 86 (214)
T ss_pred HHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCCC---EEEEE
Confidence 3477888888876532 367776654444445555555443333444445555667777887787766665 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcC
Q 046608 109 NSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
.+|..+.++ +.++++......
T Consensus 87 d~Dd~~~~~~l~~~~~~~~~~~ 108 (214)
T cd04196 87 DQDDIWLPDKLERLLKAFLKDD 108 (214)
T ss_pred CCCcccChhHHHHHHHHHhcCC
Confidence 999977666 788887644443
No 120
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=96.02 E-value=0.63 Score=38.80 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHcC----CCEEEEEccCChHHHHHHHHh-hhhc--cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCc
Q 046608 32 PMILHQIEALKAVG----VTEVVLAINYQPEVMLNFLKE-FEKK--LEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (256)
Q Consensus 32 pli~~~l~~l~~~~----i~~i~vv~~~~~~~i~~~~~~-~~~~--~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~ 104 (256)
..|...|+.+.... ..+|+||-+...+...+.+.+ .... ..++++ ......|.+.+.-.|+.....+ .
T Consensus 12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi--~~~~n~G~~~a~N~g~~~A~gd---~ 86 (299)
T cd02510 12 STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVL--RLKKREGLIRARIAGARAATGD---V 86 (299)
T ss_pred HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEE--EcCCCCCHHHHHHHHHHHccCC---E
Confidence 48888888887653 137888876554444444322 1111 134443 3344567777888888877765 8
Q ss_pred EEEEeCCeecccc-hHHHHHHHHhcCC
Q 046608 105 FFVLNSDVISEYP-LKQMIEFHRGHGG 130 (256)
Q Consensus 105 ~lv~~~D~~~~~~-~~~~~~~~~~~~~ 130 (256)
++++++|.....+ +.++++.+.++..
T Consensus 87 i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 87 LVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred EEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 9999999976655 8889888776654
No 121
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=95.98 E-value=0.15 Score=38.81 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHc----CCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 32 PMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 32 pli~~~l~~l~~~----~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
..|..+|+.+.+. ...+|+|+-+...+...+.+..+..+.. .+.+....+..|.+.+.-.+++....+ .+++
T Consensus 10 ~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~gd---~i~~ 85 (185)
T cd04179 10 ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAARGD---IVVT 85 (185)
T ss_pred hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhcCC---EEEE
Confidence 3566677766665 2567777765555555555555433322 223334455668888998998888776 8999
Q ss_pred EeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 108 LNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 108 ~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+.+|....++ +.++++.....+.+.++..
T Consensus 86 lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 86 MDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred EeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 9999966655 7888887566666555444
No 122
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=95.97 E-value=0.12 Score=39.47 Aligned_cols=83 Identities=14% Similarity=0.243 Sum_probs=53.3
Q ss_pred CEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHH
Q 046608 47 TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEF 124 (256)
Q Consensus 47 ~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~ 124 (256)
-+|+|+-+...+...+.++.+..+. ++.++ ......|.+.++..++.....+ .++++.+|...+.+ +.++++.
T Consensus 30 ~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i--~~~~n~G~~~a~n~g~~~a~~d---~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 30 YEIIFVDDGSTDRTLEILRELAARDPRVKVI--RLSRNFGQQAALLAGLDHARGD---AVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhhCCCEEEE--EecCCCCcHHHHHHHHHhcCCC---EEEEEeCCCCCCHHHHHHHHHH
Confidence 4677777655555555555543332 23333 3344568888888888888775 89999999977655 7788776
Q ss_pred HHhcCCceEEE
Q 046608 125 HRGHGGEASIM 135 (256)
Q Consensus 125 ~~~~~~~~~i~ 135 (256)
...+.++++.
T Consensus 105 -~~~~~~~v~g 114 (181)
T cd04187 105 -WEEGYDVVYG 114 (181)
T ss_pred -HhCCCcEEEE
Confidence 3444554443
No 123
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=95.96 E-value=0.15 Score=40.28 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHcC---CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 32 PMILHQIEALKAVG---VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 32 pli~~~l~~l~~~~---i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
..|..+|+.+.+.. .-+|+||-....+...+.++++..... .+.+.......|.+.++-.++.....+ .++++
T Consensus 10 ~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~-~i~~~~~~~n~G~~~a~n~g~~~a~gd---~i~~l 85 (224)
T cd06442 10 ENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP-RVRLIVRPGKRGLGSAYIEGFKAARGD---VIVVM 85 (224)
T ss_pred hhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC-ceEEEecCCCCChHHHHHHHHHHcCCC---EEEEE
Confidence 46777777776542 346777765444545555555433222 223333455668888888888888775 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcCCceEEE
Q 046608 109 NSDVISEYP-LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~~~~~i~ 135 (256)
++|.....+ +..+++.....+.+.+..
T Consensus 86 D~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 86 DADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 999976655 788888766666655443
No 124
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=95.82 E-value=0.12 Score=43.81 Aligned_cols=82 Identities=12% Similarity=0.163 Sum_probs=52.8
Q ss_pred EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHH
Q 046608 48 EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 48 ~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
+|++|-....+...+.+++...+.+.++.........|.+.++..+++....+ .++++++|...+++ +.++++...
T Consensus 40 EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G~~~A~gd---~vv~~DaD~q~~p~~i~~l~~~~~ 116 (325)
T PRK10714 40 EILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVTGD---LIITLDADLQNPPEEIPRLVAKAD 116 (325)
T ss_pred EEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHHHHhCCCC---EEEEECCCCCCCHHHHHHHHHHHH
Confidence 67776654444444445443322233443333344568888999998888765 89999999977654 888888765
Q ss_pred hcCCceE
Q 046608 127 GHGGEAS 133 (256)
Q Consensus 127 ~~~~~~~ 133 (256)
.+.|++
T Consensus 117 -~~~DvV 122 (325)
T PRK10714 117 -EGYDVV 122 (325)
T ss_pred -hhCCEE
Confidence 445654
No 125
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=95.76 E-value=0.31 Score=38.68 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=64.0
Q ss_pred ceeCCc--chHHHHHHHHHHcCC-C---EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 26 VDFANK--PMILHQIEALKAVGV-T---EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 26 l~i~g~--pli~~~l~~l~~~~i-~---~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
+|.-|. .++...|+.+..... . +++||.....+...+.+.++.....+.+... .....+.+.++-.+++..+.
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~~~~~a~~ 85 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTR-PDNRHAKAGNLNNALAHTTG 85 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEe-CCCCCCcHHHHHHHHHhCCC
Confidence 344443 378888998887653 2 6888776666777777776644333333322 22233345567777777765
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhc
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
+ .++++.+|...+++ +.++++...++
T Consensus 86 d---~i~~lD~D~~~~~~~l~~l~~~~~~~ 112 (234)
T cd06421 86 D---FVAILDADHVPTPDFLRRTLGYFLDD 112 (234)
T ss_pred C---EEEEEccccCcCccHHHHHHHHHhcC
Confidence 5 89999999977766 77888776653
No 126
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=95.71 E-value=0.12 Score=41.68 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=64.2
Q ss_pred CCcchHHHHHHHHHHc----CCCEEEEEccCChHHHHHHHHhhhhccC-cEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 29 ANKPMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~----~i~~i~vv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
++...|..+++.+.+. .--+|+|+-+...+...+.++++...++ ..+.........|.+.++..++.....+
T Consensus 19 ne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g~--- 95 (243)
T PLN02726 19 NERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGD--- 95 (243)
T ss_pred CchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCCC---
Confidence 3445566666655432 1236777765545555555555433222 2333333444567778888888877665
Q ss_pred cEEEEeCCeecccc-hHHHHHHHHhcCCceEEE
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~ 135 (256)
.++++++|..++.+ +.++++...+++.+++..
T Consensus 96 ~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 96 FVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 89999999977655 788888776666666544
No 127
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=95.71 E-value=0.4 Score=36.72 Aligned_cols=102 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred cee-CCcchHHHHHHHHHHcCC----CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhc--
Q 046608 26 VDF-ANKPMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI-- 98 (256)
Q Consensus 26 l~i-~g~pli~~~l~~l~~~~i----~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~-- 98 (256)
+|. +....|..+|+.+.+... -+|+|+.....+...+.+.+. +..+.........|.+.++-.++....
T Consensus 3 Ip~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~----~~~~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 3 IPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA----GATVLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred EeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc----CCeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 344 334577788888876532 357777655555566666554 333433333445577788888877764
Q ss_pred CCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCce
Q 046608 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 132 (256)
..+.+.++++.+|...+++ +.++++.+.. +.++
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~ 112 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAA-GARV 112 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCe
Confidence 1122389999999988766 6777776654 3443
No 128
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=95.66 E-value=0.17 Score=40.27 Aligned_cols=92 Identities=16% Similarity=0.154 Sum_probs=61.4
Q ss_pred CCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 29 ANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 29 ~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
++. ..|..+|+.+.+....+|+||.....+...+.+........+.+.. .+..|...++-.++.....+ .+++
T Consensus 10 ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~---~~~~g~~~a~n~g~~~a~~d---~v~~ 83 (235)
T cd06434 10 DEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGGIFVIT---VPHPGKRRALAEGIRHVTTD---IVVL 83 (235)
T ss_pred CCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCcEEEEe---cCCCChHHHHHHHHHHhCCC---EEEE
Confidence 344 6888889988876556788877666666555543322221233332 23456777887788777665 8999
Q ss_pred EeCCeecccc-hHHHHHHHH
Q 046608 108 LNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 108 ~~~D~~~~~~-~~~~~~~~~ 126 (256)
+++|.....+ +.++++.+.
T Consensus 84 lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 84 LDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred ECCCceeChhHHHHHHHhcc
Confidence 9999988766 778887766
No 129
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.55 E-value=0.2 Score=38.96 Aligned_cols=96 Identities=15% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 29 ANKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
++...|..+|+.+.+.. ..+|+|+-+...+...+.+.+.....++.++ ...+..|.+.++-.+++.....+.+.++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~--~~~~n~g~~~~~n~~~~~a~~~~~d~v~ 84 (202)
T cd04185 7 NRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYL--RLPENLGGAGGFYEGVRRAYELGYDWIW 84 (202)
T ss_pred CCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCceEEE--ECccccchhhHHHHHHHHHhccCCCEEE
Confidence 44557888888887763 2467777665556666677665443333333 3344567666666666655322233899
Q ss_pred EEeCCeecccc-hHHHHHHHH
Q 046608 107 VLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~~~~~ 126 (256)
++.+|...+.+ +.++++...
T Consensus 85 ~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 85 LMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred EeCCCCCcChHHHHHHHHHHh
Confidence 99999988766 677777655
No 130
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=95.39 E-value=0.29 Score=39.16 Aligned_cols=100 Identities=11% Similarity=0.141 Sum_probs=63.9
Q ss_pred CcchHHHHHHHHHHcCC----CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 30 NKPMILHQIEALKAVGV----TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i----~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
..+.+..+++.+.+... -+++|+-+...+...+.++.+..+ ...+.+.. .+..|.+.++-.+++..+.+ .+
T Consensus 11 ~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~-~~~~~~~~a~N~g~~~a~~d---~v 85 (249)
T cd02525 11 EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLID-NPKRIQSAGLNIGIRNSRGD---II 85 (249)
T ss_pred chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEe-CCCCCchHHHHHHHHHhCCC---EE
Confidence 34567888888876543 367777766566666666655433 12233332 23446667788888877665 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhcCCceEE
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGHGGEASI 134 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i 134 (256)
+++++|...+++ +.++++...+.+.+++.
T Consensus 86 ~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 86 IRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred EEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 999999977665 78888766666554443
No 131
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=95.30 E-value=0.0045 Score=49.81 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=42.1
Q ss_pred hhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHHHHHhhhcc---------------cCCcccccCceeccCC
Q 046608 196 KEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLRLYLDFLQK---------------NSSSKLATGSNIIGNV 255 (256)
Q Consensus 196 ~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~~~~~~~~~---------------~~~~~~~~~~~~~g~~ 255 (256)
.+.++.+++.+ .+.++|+|.|+ ++|++|++.++..+.. .....+.+++.|.|+|
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v 99 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQV 99 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCe
Confidence 57777777665 77788999999 9999999999976431 2345788888888876
No 132
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=95.28 E-value=0.47 Score=36.76 Aligned_cols=94 Identities=13% Similarity=0.193 Sum_probs=53.1
Q ss_pred CcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCC---cHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGT---AGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~---~~s~~~~~~~i~~~~~~ 103 (256)
+.+.|...|+.+.+.. .-+++||.....+...+.++++...+ ..++.+.......|. +.++..+.+..+.+
T Consensus 12 ~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~~d--- 88 (196)
T cd02520 12 VDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEARYD--- 88 (196)
T ss_pred CCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCCCC---
Confidence 4446777788776642 24677776554444444444433222 233333322323343 23445566666555
Q ss_pred cEEEEeCCeecccc-hHHHHHHHH
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
.++++.+|...+++ +.++++...
T Consensus 89 ~i~~~D~D~~~~~~~l~~l~~~~~ 112 (196)
T cd02520 89 ILVISDSDISVPPDYLRRMVAPLM 112 (196)
T ss_pred EEEEECCCceEChhHHHHHHHHhh
Confidence 89999999977665 777777643
No 133
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=95.26 E-value=0.29 Score=37.53 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=59.9
Q ss_pred CCcchHHHHHHHHHHcCCC--EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 29 ANKPMILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i~--~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
++...|..+|+.+.+.... +|+||-+...+...+.++++... +.. ....+..|.+.+.-.+++....+ .++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~--~~~--~~~~~~~g~~~a~n~~~~~a~~~---~v~ 80 (202)
T cd06433 8 NQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDK--ITY--WISEPDKGIYDAMNKGIALATGD---IIG 80 (202)
T ss_pred chHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhh--cEE--EEecCCcCHHHHHHHHHHHcCCC---EEE
Confidence 3345788888888766433 67777554455566666655332 112 22334567788888888887765 899
Q ss_pred EEeCCeecccc-hHHHHHHHHhc
Q 046608 107 VLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
++.+|.....+ +.+++......
T Consensus 81 ~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 81 FLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred EeCCCcccCchHHHHHHHHHHhC
Confidence 99999966544 77777444433
No 134
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=94.85 E-value=0.49 Score=37.68 Aligned_cols=100 Identities=21% Similarity=0.281 Sum_probs=57.9
Q ss_pred ceeCCc-c-hHHHHHHHHHHcC--CCEEEEEccCChH-HHHHHHHhhhhccCcEEEeeccCCcCC-CcHHHHHHHhhhcC
Q 046608 26 VDFANK-P-MILHQIEALKAVG--VTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQETEPLG-TAGPLALARDKLID 99 (256)
Q Consensus 26 l~i~g~-p-li~~~l~~l~~~~--i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~~~~~~~~~g-~~~s~~~~~~~i~~ 99 (256)
+|.-|. + +|...++.+.... .-+++||-+...+ ...+.++.+..+.+.++.+....+..| .+.++-.+++....
T Consensus 4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~ 83 (236)
T cd06435 4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAP 83 (236)
T ss_pred EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCC
Confidence 455444 3 7889999988764 2467776644332 222222222222222333333233345 36778888777653
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHH
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
. .+.++++++|...+++ +.+++..+.
T Consensus 84 ~-~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 84 D-AEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred C-CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 2 1289999999977766 788887764
No 135
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.72 E-value=0.41 Score=41.49 Aligned_cols=102 Identities=11% Similarity=0.181 Sum_probs=57.3
Q ss_pred ccee-CCcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCC---cHHHHHHHhhh
Q 046608 25 LVDF-ANKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGT---AGPLALARDKL 97 (256)
Q Consensus 25 ll~i-~g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~---~~s~~~~~~~i 97 (256)
++|. ++.+.|...|+.+.... --+|+++.....+...+.+++...++ +.++..+...+..|. ..++..+.+..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 4455 45678889999887764 24677765444333333333332221 233332333333333 23444455555
Q ss_pred cCCCCCcEEEEeCCeecccc-hHHHHHHHHhcC
Q 046608 98 IDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 98 ~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
+.+ .++++++|...+++ ++++++.+.+.+
T Consensus 126 ~ge---~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 126 RHD---ILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred cCC---EEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 544 89999999977766 777777665433
No 136
>PRK11204 N-glycosyltransferase; Provisional
Probab=94.69 E-value=0.46 Score=41.74 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=62.4
Q ss_pred CCcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 29 ANKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
++...+..+++.+.+.. .-+|+|+.....+...+.+++...+. ++++ ....+..|-+.++-.+++..+.+ .+
T Consensus 64 ne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~--i~~~~n~Gka~aln~g~~~a~~d---~i 138 (420)
T PRK11204 64 NEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRV--IHLAENQGKANALNTGAAAARSE---YL 138 (420)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEE--EEcCCCCCHHHHHHHHHHHcCCC---EE
Confidence 34567888888887654 23677776554555555555443322 2333 33344567788888888877665 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhc
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
+++++|.+.+.+ +.++++.+.+.
T Consensus 139 ~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 139 VCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred EEECCCCCCChhHHHHHHHHHHhC
Confidence 999999977766 78888876544
No 137
>PRK10073 putative glycosyl transferase; Provisional
Probab=94.68 E-value=0.52 Score=40.10 Aligned_cols=101 Identities=7% Similarity=0.054 Sum_probs=65.8
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
+....|...|+.+..... -+|+||-....+...+.+.++..+. .++++ .+ +..|.+.+.-.+++....+ .+
T Consensus 16 N~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi--~~-~n~G~~~arN~gl~~a~g~---yi 89 (328)
T PRK10073 16 NAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLL--HQ-ANAGVSVARNTGLAVATGK---YV 89 (328)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEE--EC-CCCChHHHHHHHHHhCCCC---EE
Confidence 445688999999887642 3666665444444444455443322 34433 33 3557777888888888776 89
Q ss_pred EEEeCCeecccc-hHHHHHHHHhcCCceEEE
Q 046608 106 FVLNSDVISEYP-LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 106 lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~ 135 (256)
+++++|..+.++ +..+++...+.+.+.+++
T Consensus 90 ~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 90 AFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred EEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 999999976655 778888776666666543
No 138
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=94.61 E-value=0.69 Score=36.92 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=62.0
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 29 ANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
++...|...|+.+... .++|+|+-+...+...+.++.+ ++++... ...|.+.+.-.++.....+ +++++
T Consensus 10 Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~~----~~~v~~~---~~~g~~~~~n~~~~~a~~d---~vl~l 78 (229)
T cd02511 10 NEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKEY----GAKVYQR---WWDGFGAQRNFALELATND---WVLSL 78 (229)
T ss_pred CcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHHc----CCEEEEC---CCCChHHHHHHHHHhCCCC---EEEEE
Confidence 4445788888888654 3688888776666666666643 5666543 4556777777788877766 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcC
Q 046608 109 NSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
.+|....++ +.++.+.....+
T Consensus 79 DaD~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 79 DADERLTPELADEILALLATDD 100 (229)
T ss_pred eCCcCcCHHHHHHHHHHHhCCC
Confidence 999987766 556666555444
No 139
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.53 E-value=0.59 Score=36.80 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=60.2
Q ss_pred ceeC-CcchHHHHHHHHHHcC--C--CEEEEEccCChHHHHHHHH-hhh-hccCcEEEeeccCCcCCCcHHHHHHHhhhc
Q 046608 26 VDFA-NKPMILHQIEALKAVG--V--TEVVLAINYQPEVMLNFLK-EFE-KKLEIKITCSQETEPLGTAGPLALARDKLI 98 (256)
Q Consensus 26 l~i~-g~pli~~~l~~l~~~~--i--~~i~vv~~~~~~~i~~~~~-~~~-~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~ 98 (256)
+|.. ....|..+|+.+.... . -+|+||-+...+...+.+. ... ....+.++........|...++-.++....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~ 82 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK 82 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc
Confidence 3443 3356788888876653 2 3677776544444444443 111 111333332222234555667777777666
Q ss_pred CCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCce
Q 046608 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 132 (256)
.+ .++++.+|.+..++ +.++++.+..++...
T Consensus 83 ~d---~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~ 114 (229)
T cd04192 83 GD---WIVTTDADCVVPSNWLLTFVAFIQKEQIGL 114 (229)
T ss_pred CC---EEEEECCCcccCHHHHHHHHHHhhcCCCcE
Confidence 65 89999999977766 788888666555443
No 140
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=94.43 E-value=0.84 Score=40.52 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=63.3
Q ss_pred CCcchHHHHHHHHHHcCC--C--EEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 29 ANKPMILHQIEALKAVGV--T--EVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~--~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
++...|...++.+.+... + +|+|+-+...+...+.+++..... ++.+.... ...|-+.++-.|++....+
T Consensus 59 Ne~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~--~~~Gka~AlN~gl~~s~g~--- 133 (439)
T TIGR03111 59 NSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMN--SDQGKAKALNAAIYNSIGK--- 133 (439)
T ss_pred CChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeC--CCCCHHHHHHHHHHHccCC---
Confidence 455788899998877642 2 466666555555555554433222 34444332 3357788888888877665
Q ss_pred cEEEEeCCeecccc-hHHHHHHHHhcC
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
.++++++|.+.+.+ +.++++.+.+..
T Consensus 134 ~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 134 YIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred EEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 89999999987766 788888766443
No 141
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=94.41 E-value=0.65 Score=39.60 Aligned_cols=181 Identities=10% Similarity=0.030 Sum_probs=91.3
Q ss_pred CCcchHHHHHHHHHHc----------CCCEEEEEccCChHHHHHHHHhhhhcc---CcEEEeeccCCcCCCcHHHHHHHh
Q 046608 29 ANKPMILHQIEALKAV----------GVTEVVLAINYQPEVMLNFLKEFEKKL---EIKITCSQETEPLGTAGPLALARD 95 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~----------~i~~i~vv~~~~~~~i~~~~~~~~~~~---~~~v~~~~~~~~~g~~~s~~~~~~ 95 (256)
++..-|..+++.+.+. ..-+|+||-....+...+.+.++.... +..+.+.......|.+.++..++.
T Consensus 80 Ne~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~ 159 (333)
T PTZ00260 80 NEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGML 159 (333)
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4456666666665431 124677776544444444454443221 122333333455688888888888
Q ss_pred hhcCCCCCcEEEEeCCeecccc-hHHHHHHHHh---cCCceEEEEEecCCCcCceeEEEcCC---CCeEeEEe-ecCCCC
Q 046608 96 KLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRG---HGGEASIMVTKVDEPSKYGVVVMEET---MGKVEKFV-EKPKNF 167 (256)
Q Consensus 96 ~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~v~~~~~---~~~v~~~~-ek~~~~ 167 (256)
....+ .++.+++|...+.+ +.++++.... .+.++++......... ........- ..++.... ..-...
T Consensus 160 ~a~gd---~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~-~~~~~~~~~r~~~~~~~~~l~~~~~~~ 235 (333)
T PTZ00260 160 ASRGK---YILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDS-DVVAKRKWYRNILMYGFHFIVNTICGT 235 (333)
T ss_pred HccCC---EEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccC-cccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 77665 89999999976644 6777776543 4455544432211000 000000000 00000000 000000
Q ss_pred CCCeEEEEEEEeCHhhHHhcc----cCCCCcchhhHHHHHhcC-cEEEEEe
Q 046608 168 VGNKINAGIYLLNPSVLDRIE----LKPTSIEKEVFPEIAVEN-KLFAMVL 213 (256)
Q Consensus 168 ~~~~~~~Giy~~~~~~~~~l~----~~~~~~~~~~~~~l~~~~-~v~~~~~ 213 (256)
.-.-..+|+.+|+.+.++.+- ...+.+..+++-.+...+ ++.-+++
T Consensus 236 ~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv 286 (333)
T PTZ00260 236 NLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPV 286 (333)
T ss_pred CcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEce
Confidence 111335789999999887652 223445556665555555 5655555
No 142
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=94.36 E-value=0.55 Score=40.84 Aligned_cols=104 Identities=10% Similarity=0.102 Sum_probs=64.3
Q ss_pred CCcchHHHHHHHHHHcCC---CEEEEEccCChHHHHHHHHhhhhcc----CcEEEeeccC--CcCCCcHHHHHHHhhhcC
Q 046608 29 ANKPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEKKL----EIKITCSQET--EPLGTAGPLALARDKLID 99 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i---~~i~vv~~~~~~~i~~~~~~~~~~~----~~~v~~~~~~--~~~g~~~s~~~~~~~i~~ 99 (256)
++...|...|+.+.+... -+|+||-+...+...+.++++..+. .++++...+. .-.|...++..+.+....
T Consensus 50 Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~ 129 (384)
T TIGR03469 50 NEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAART 129 (384)
T ss_pred CcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhc
Confidence 456789999999877532 3777777665555555555443222 2444322111 123455677777777662
Q ss_pred CC--CCcEEEEeCCeecccc-hHHHHHHHHhcCCce
Q 046608 100 DS--GEPFFVLNSDVISEYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 100 ~~--~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 132 (256)
.. .|.++.+++|...+++ +.++++...+++.+.
T Consensus 130 ~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 130 LAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred cCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 11 2289999999977666 788888777666544
No 143
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.20 E-value=0.93 Score=34.97 Aligned_cols=94 Identities=15% Similarity=0.124 Sum_probs=58.0
Q ss_pred CCc-chHHHHHHHHHHcCC--CEEEEEccCC-hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCc
Q 046608 29 ANK-PMILHQIEALKAVGV--TEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (256)
Q Consensus 29 ~g~-pli~~~l~~l~~~~i--~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~ 104 (256)
++. ..+..+|+.+.+... -+|+|+-+.. ...+...+..+... .-.+.+.......|.+.+.-.++.....+ .
T Consensus 11 n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a~~d---~ 86 (202)
T cd04184 11 NTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ-DPRIKVVFREENGGISAATNSALELATGE---F 86 (202)
T ss_pred cCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc-CCCEEEEEcccCCCHHHHHHHHHHhhcCC---E
Confidence 444 677888888876532 3666665433 33344444433222 11233333344567778888888877665 8
Q ss_pred EEEEeCCeecccc-hHHHHHHHH
Q 046608 105 FFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 105 ~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
++++.+|....++ +.++++.+.
T Consensus 87 i~~ld~D~~~~~~~l~~~~~~~~ 109 (202)
T cd04184 87 VALLDHDDELAPHALYEVVKALN 109 (202)
T ss_pred EEEECCCCcCChHHHHHHHHHHH
Confidence 9999999977766 788888763
No 144
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=93.97 E-value=0.62 Score=41.39 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=62.5
Q ss_pred ccceeCC-cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 24 PLVDFAN-KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 24 ~ll~i~g-~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
.++|.-| ...+..+++.+.+.. --+|+++.+...+...+.+.+...+. +++++.. .+..|-+.++-.++...+.
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~--~~n~Gka~AlN~gl~~a~~ 156 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHL--AHNQGKAIALRMGAAAARS 156 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEe--CCCCCHHHHHHHHHHhCCC
Confidence 3455544 456788888877653 23677776544444444444432222 3454432 3345677788888777655
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhc
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
+ .++++++|.+.+.+ +.++++.+.+.
T Consensus 157 d---~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 157 E---YLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred C---EEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 5 89999999988776 77787766544
No 145
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.89 E-value=0.75 Score=40.48 Aligned_cols=99 Identities=17% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCcc-hHHHHHHHHHHcCCC--EEEEEccCChHHHHHHHHhhhhcc--CcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 29 ANKP-MILHQIEALKAVGVT--EVVLAINYQPEVMLNFLKEFEKKL--EIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 29 ~g~p-li~~~l~~l~~~~i~--~i~vv~~~~~~~i~~~~~~~~~~~--~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
+..+ .++.+++.+.+.... +++++.....+...+.+.+...+. .+++.. ......|.+.++..++.....+
T Consensus 64 nE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~gK~~al~~~l~~~~~d--- 139 (439)
T COG1215 64 NEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIY-PEKKNGGKAGALNNGLKRAKGD--- 139 (439)
T ss_pred CCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEe-ccccCccchHHHHHHHhhcCCC---
Confidence 4456 899999999998633 788888766777777777765544 233331 1134566788899998888765
Q ss_pred cEEEEeCCeecccc-hHHHHHHHHhcCCc
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHRGHGGE 131 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~~~~~~ 131 (256)
.++++++|++.+.+ +.+++.........
T Consensus 140 ~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 140 VVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred EEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 89999999987766 78888877665543
No 146
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=93.87 E-value=0.64 Score=37.00 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=53.6
Q ss_pred CCcchHHHHHHHHHHcCC----CEEEEEccCChHHH----HHHHHhhhhccCcEEEeeccCCcCC-CcHHHHHHHhhhcC
Q 046608 29 ANKPMILHQIEALKAVGV----TEVVLAINYQPEVM----LNFLKEFEKKLEIKITCSQETEPLG-TAGPLALARDKLID 99 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i----~~i~vv~~~~~~~i----~~~~~~~~~~~~~~v~~~~~~~~~g-~~~s~~~~~~~i~~ 99 (256)
+....|...|+.+.+... -+|+|+-+ ..+.. .+.+..+. ..+.++......+..| .+.++-.++...+.
T Consensus 11 Ne~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~-~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~~ 88 (232)
T cd06437 11 NEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA-AQGVNIKHVRRADRTGYKAGALAEGMKVAKG 88 (232)
T ss_pred CcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh-hcCCceEEEECCCCCCCchHHHHHHHHhCCC
Confidence 445688888988876532 24555544 33332 23332221 1134454444444445 35677778777766
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHH
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFH 125 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~ 125 (256)
+ .++++++|...+++ +.++....
T Consensus 89 ~---~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 89 E---YVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred C---EEEEEcCCCCCChHHHHHhhhhh
Confidence 5 89999999987766 66655443
No 147
>PRK10063 putative glycosyl transferase; Provisional
Probab=93.60 E-value=1.8 Score=35.14 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=58.4
Q ss_pred CCcchHHHHHHHHHHc----C-CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 29 ANKPMILHQIEALKAV----G-VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~----~-i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
+....|...|+.+.+. . --+++|+-+...+...+.++++.....++++ .+. ..|.+.++-.++.....+
T Consensus 11 N~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i--~~~-~~G~~~A~N~Gi~~a~g~--- 84 (248)
T PRK10063 11 RNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFV--SEP-DNGIYDAMNKGIAMAQGR--- 84 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEE--ECC-CCCHHHHHHHHHHHcCCC---
Confidence 4455677777777531 2 2367777655556666667665433234443 333 448888888888887765
Q ss_pred cEEEEeCCeecccchHHHHHHHHhcC
Q 046608 104 PFFVLNSDVISEYPLKQMIEFHRGHG 129 (256)
Q Consensus 104 ~~lv~~~D~~~~~~~~~~~~~~~~~~ 129 (256)
+++.+++|.++.++..+++.....++
T Consensus 85 ~v~~ld~DD~~~~~~~~~~~~~~~~~ 110 (248)
T PRK10063 85 FALFLNSGDIFHQDAANFVRQLKMQK 110 (248)
T ss_pred EEEEEeCCcccCcCHHHHHHHHHhCC
Confidence 89999988877656444444444333
No 148
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=93.58 E-value=0.93 Score=37.36 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEe
Q 046608 32 PMILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN 109 (256)
Q Consensus 32 pli~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~ 109 (256)
..|..+|+.+.+. ..+|+||-+.. .+.+.+.+... ..+.++ ...+..|-+.+.-.+++.....+.|.+++++
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~~---~~i~~i--~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD 81 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLRG---QKIALI--HLGDNQGIAGAQNQGLDASFRRGVQGVLLLD 81 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhccC---CCeEEE--ECCCCcchHHHHHHHHHHHHHCCCCEEEEEC
Confidence 4677778777765 45777776542 22344433322 134443 3445568888888888777332333899999
Q ss_pred CCeecccc-hHHHHHHHHhcCCceEEE
Q 046608 110 SDVISEYP-LKQMIEFHRGHGGEASIM 135 (256)
Q Consensus 110 ~D~~~~~~-~~~~~~~~~~~~~~~~i~ 135 (256)
.|...+.+ +.++++.....+....++
T Consensus 82 ~D~~~~~~~l~~l~~~~~~~~~~~~~~ 108 (281)
T TIGR01556 82 QDSRPGNAFLAAQWKLLSAENGQACAL 108 (281)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 99977655 677777665543233333
No 149
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=93.44 E-value=3.2 Score=32.90 Aligned_cols=90 Identities=16% Similarity=0.249 Sum_probs=55.6
Q ss_pred eCCc-chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 28 FANK-PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 28 i~g~-pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
+++. ..|..+|+.+.+. ..+|+|+-+...+......+. ...++.++ ......|-+.+.-.+++.....+.+.++
T Consensus 6 yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~--~~~~i~~i--~~~~n~G~~~a~N~g~~~a~~~~~d~v~ 80 (237)
T cd02526 6 YNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL--NSEKIELI--HLGENLGIAKALNIGIKAALENGADYVL 80 (237)
T ss_pred ecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc--cCCcEEEE--ECCCceehHHhhhHHHHHHHhCCCCEEE
Confidence 3555 7888889888876 567777654433332222221 11134443 3344567778888888877542223899
Q ss_pred EEeCCeecccc-hHHHH
Q 046608 107 VLNSDVISEYP-LKQMI 122 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~ 122 (256)
++++|...+++ +.+++
T Consensus 81 ~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 81 LFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EECCCCCcCHhHHHHHH
Confidence 99999987766 67764
No 150
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=93.43 E-value=2.4 Score=33.35 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=59.6
Q ss_pred CCcchHHHHHHHHHHcCC---CEEEEEccCChHHHHHHHHhhhhc---cCcEEEeecc--CCcCCCcHHHHHHHhhhcCC
Q 046608 29 ANKPMILHQIEALKAVGV---TEVVLAINYQPEVMLNFLKEFEKK---LEIKITCSQE--TEPLGTAGPLALARDKLIDD 100 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i---~~i~vv~~~~~~~i~~~~~~~~~~---~~~~v~~~~~--~~~~g~~~s~~~~~~~i~~~ 100 (256)
++...|...|+.+..... -+|+||-....+...+.+.++..+ .++.+..... ....|.+.+.-.+++..+.+
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~gd 86 (219)
T cd06913 7 NGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGR 86 (219)
T ss_pred CcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcCCC
Confidence 445688888888876532 377777655444444444443222 1344433222 23356666777777766665
Q ss_pred CCCcEEEEeCCeecccc-hHHHHHHHHhcCC
Q 046608 101 SGEPFFVLNSDVISEYP-LKQMIEFHRGHGG 130 (256)
Q Consensus 101 ~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~ 130 (256)
.++.+.+|.+..++ +.+++....++..
T Consensus 87 ---~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 87 ---YLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred ---EEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 89999999976655 7777776655543
No 151
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=92.87 E-value=1.5 Score=33.15 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=55.8
Q ss_pred cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC-CcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 31 KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET-EPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 31 ~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~-~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
...|..+|+.+.+.. ..+++|+-....+...+.+.++....+.++....+. ...|.+.+.-.+.+....+ .+++
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g~---~i~~ 85 (182)
T cd06420 9 PEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGD---YLIF 85 (182)
T ss_pred hHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcCC---EEEE
Confidence 346788888887652 357777765555555566655433223333322222 2234455566677766655 8999
Q ss_pred EeCCeecccc-hHHHHHHH
Q 046608 108 LNSDVISEYP-LKQMIEFH 125 (256)
Q Consensus 108 ~~~D~~~~~~-~~~~~~~~ 125 (256)
+.+|.+...+ +.++++.+
T Consensus 86 lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 86 IDGDCIPHPDFIADHIELA 104 (182)
T ss_pred EcCCcccCHHHHHHHHHHh
Confidence 9999977666 67777654
No 152
>PRK10018 putative glycosyl transferase; Provisional
Probab=92.55 E-value=2.7 Score=34.90 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=58.4
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCCh--HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCc
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQP--EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEP 104 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~--~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~ 104 (256)
+....|...|+.+..... -+++||-+... +.+.+++.... ..++.+.......|.+.+.-.++.....+ .
T Consensus 15 N~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~---~~ri~~i~~~~n~G~~~a~N~gi~~a~g~---~ 88 (279)
T PRK10018 15 NRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN---DPRITYIHNDINSGACAVRNQAIMLAQGE---Y 88 (279)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC---CCCEEEEECCCCCCHHHHHHHHHHHcCCC---E
Confidence 455677888888776543 36666654332 33344444321 22344444445567777777788877766 8
Q ss_pred EEEEeCCeecccc-hHHHHHHHHh
Q 046608 105 FFVLNSDVISEYP-LKQMIEFHRG 127 (256)
Q Consensus 105 ~lv~~~D~~~~~~-~~~~~~~~~~ 127 (256)
++++.+|....++ +..+++....
T Consensus 89 I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 89 ITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred EEEECCCCCCCccHHHHHHHHHHh
Confidence 9999999977665 7778776654
No 153
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=92.36 E-value=0.37 Score=42.34 Aligned_cols=62 Identities=27% Similarity=0.443 Sum_probs=41.5
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeC---CcchHHHHHHHHHHc----------CCC-EEEEEcc-CChHHHHHHHHh
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFA---NKPMILHQIEALKAV----------GVT-EVVLAIN-YQPEVMLNFLKE 66 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~---g~pli~~~l~~l~~~----------~i~-~i~vv~~-~~~~~i~~~~~~ 66 (256)
.++++|||.|+|++- ..||.+.++| |+.++++..+.+... +.+ ..+|.++ ...+...++++.
T Consensus 99 a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~f~~ 175 (477)
T KOG2388|consen 99 AVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEYFES 175 (477)
T ss_pred eEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhHHhh
Confidence 478899999999987 7899999997 455877766544221 211 2334443 446677777763
No 154
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=92.18 E-value=0.49 Score=37.46 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=52.2
Q ss_pred ceeCC-cchHHHHHHHHHHc--CCCEEEEEccCChHHHHHHHHhhhh---ccCcEEEeeccCC-cCCCcHHHHHHHhhhc
Q 046608 26 VDFAN-KPMILHQIEALKAV--GVTEVVLAINYQPEVMLNFLKEFEK---KLEIKITCSQETE-PLGTAGPLALARDKLI 98 (256)
Q Consensus 26 l~i~g-~pli~~~l~~l~~~--~i~~i~vv~~~~~~~i~~~~~~~~~---~~~~~v~~~~~~~-~~g~~~s~~~~~~~i~ 98 (256)
+|.-| .+.|...|+.+... .--+++|+.....+...+.+..+.. ..++.++...... ..+...++..++....
T Consensus 7 ip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~ 86 (228)
T PF13641_consen 7 IPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAAR 86 (228)
T ss_dssp --BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH--
T ss_pred EEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcC
Confidence 44433 36777888877754 2346677665444333333332211 2133443222211 1234567778888777
Q ss_pred CCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCce
Q 046608 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEA 132 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~ 132 (256)
.+ .++++.+|.+.+.+ +.++++.+...+..+
T Consensus 87 ~d---~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~ 118 (228)
T PF13641_consen 87 GD---YILFLDDDTVLDPDWLERLLAAFADPGVGA 118 (228)
T ss_dssp -S---EEEEE-SSEEE-CHHHHHHHHHHHBSS--E
T ss_pred CC---EEEEECCCcEECHHHHHHHHHHHHhCCCCe
Confidence 55 89999999987766 788888774444433
No 155
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=92.16 E-value=3.4 Score=34.22 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=48.1
Q ss_pred HHHHHHc---CCCEEEEEccCChHHHHHHHHhhhhccCcE-EEeec-cCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe
Q 046608 38 IEALKAV---GVTEVVLAINYQPEVMLNFLKEFEKKLEIK-ITCSQ-ETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112 (256)
Q Consensus 38 l~~l~~~---~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~-v~~~~-~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~ 112 (256)
+..+... .--+|+|+-+...+...+.+.......+.. .+... .....|.+.+.=.++...+.+ .++++++|.
T Consensus 23 l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d---~l~flD~D~ 99 (281)
T PF10111_consen 23 LESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYARGD---YLIFLDADC 99 (281)
T ss_pred HHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcCCC---EEEEEcCCe
Confidence 5656652 123555555444444434444433333333 22221 123457777777777777776 899999999
Q ss_pred ecccc-hHHHHH
Q 046608 113 ISEYP-LKQMIE 123 (256)
Q Consensus 113 ~~~~~-~~~~~~ 123 (256)
+..++ +.++++
T Consensus 100 i~~~~~i~~~~~ 111 (281)
T PF10111_consen 100 IPSPDFIEKLLN 111 (281)
T ss_pred eeCHHHHHHHHH
Confidence 88766 677777
No 156
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=91.33 E-value=3.4 Score=39.80 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=64.4
Q ss_pred ceeCCcc--hHHHHHHHHHHcC-C-C--EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 26 VDFANKP--MILHQIEALKAVG-V-T--EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 26 l~i~g~p--li~~~l~~l~~~~-i-~--~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
+|.-|.+ ++...+..+.+.. . + +|+|+-....+...+.+++. +++++... .+..+-++++-.+++..+.
T Consensus 266 IPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~----~v~yI~R~-~n~~gKAGnLN~aL~~a~G 340 (852)
T PRK11498 266 VPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV----GVKYIARP-THEHAKAGNINNALKYAKG 340 (852)
T ss_pred EecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC----CcEEEEeC-CCCcchHHHHHHHHHhCCC
Confidence 4445665 5777787776543 2 2 57777655566666666553 55554322 2233456777888887766
Q ss_pred CCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEEE
Q 046608 100 DSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~ 137 (256)
+ .++++++|++...+ +++++..+.+.. +..++.+
T Consensus 341 E---yIavlDAD~ip~pdfL~~~V~~f~~dP-~VglVQt 375 (852)
T PRK11498 341 E---FVAIFDCDHVPTRSFLQMTMGWFLKDK-KLAMMQT 375 (852)
T ss_pred C---EEEEECCCCCCChHHHHHHHHHHHhCC-CeEEEEc
Confidence 5 89999999987766 567776655443 3444443
No 157
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=91.24 E-value=3.7 Score=31.64 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=57.9
Q ss_pred CCcchHHHHHHHHHHcC-CCEEEEEccCChHHHHHHHH-hhhhccCcEEEeec-cCCcCCCcHHHHHHHhhhcCC-----
Q 046608 29 ANKPMILHQIEALKAVG-VTEVVLAINYQPEVMLNFLK-EFEKKLEIKITCSQ-ETEPLGTAGPLALARDKLIDD----- 100 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~-i~~i~vv~~~~~~~i~~~~~-~~~~~~~~~v~~~~-~~~~~g~~~s~~~~~~~i~~~----- 100 (256)
+....|..+|+.+.+.. ..+|+|+.....+...+.++ .. ...++.++... +....|-+.++-.++..+...
T Consensus 7 Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~-~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g 85 (191)
T cd06436 7 NEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAI-TDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEG 85 (191)
T ss_pred ccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhhee-cCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccc
Confidence 44567888888887754 23677776655555555554 11 11134443221 123457788888888776421
Q ss_pred ---CCCcEEEEeCCeecccc-hHHHHHHHH
Q 046608 101 ---SGEPFFVLNSDVISEYP-LKQMIEFHR 126 (256)
Q Consensus 101 ---~~~~~lv~~~D~~~~~~-~~~~~~~~~ 126 (256)
..+.++++.+|...+++ +.++.....
T Consensus 86 ~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~ 115 (191)
T cd06436 86 ADPERVIIAVIDADGRLDPNALEAVAPYFS 115 (191)
T ss_pred cCCCccEEEEECCCCCcCHhHHHHHHHhhc
Confidence 11278999999988766 666555443
No 158
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=90.63 E-value=3.7 Score=34.59 Aligned_cols=196 Identities=10% Similarity=0.025 Sum_probs=97.9
Q ss_pred CCcchHHHHHHHHHHc----CCCEEEEEccCChHHHHHHHHhhhhccCcEEEe----ec-cCCcCCCcHHHHHHHhhhcC
Q 046608 29 ANKPMILHQIEALKAV----GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITC----SQ-ETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~----~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~----~~-~~~~~g~~~s~~~~~~~i~~ 99 (256)
+....|..+|+.+.+. ...+|+||-+...+...+.++++. .++.. .. .....|.+.++..++.....
T Consensus 41 Nee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~----~~v~~~~~~~~~~~~n~Gkg~A~~~g~~~a~g 116 (306)
T PRK13915 41 NEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAG----ARVVSREEILPELPPRPGKGEALWRSLAATTG 116 (306)
T ss_pred CcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhc----chhhcchhhhhccccCCCHHHHHHHHHHhcCC
Confidence 4446777888877653 245788877655555555565542 22111 01 12345777788778776655
Q ss_pred CCCCcEEEEeCCee-cccc-hHHHHHHHH-hcCCceEEEEEecCCCcCceeEEEcCCCCeEeEEeec-------CCCCCC
Q 046608 100 DSGEPFFVLNSDVI-SEYP-LKQMIEFHR-GHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEK-------PKNFVG 169 (256)
Q Consensus 100 ~~~~~~lv~~~D~~-~~~~-~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~ek-------~~~~~~ 169 (256)
+ .++++++|.. .+.+ +.++++.+. ..+.+.+........... +......+ +++.+..-. +....-
T Consensus 117 d---~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~-~~~~~~~~-gr~~~~~~~~l~~~~~~~l~~i 191 (306)
T PRK13915 117 D---IVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVS-GGVDATGG-GRVTELVARPLLNLLRPELAGF 191 (306)
T ss_pred C---EEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccc-cccCcCCC-CchHHHHHHHHHHHHHHhhhcc
Confidence 5 8999999995 5544 788888765 344444443322111000 00011111 333221100 000000
Q ss_pred CeEEEEEEEeCHhhHHhcccC-CCCcchhhHHHHH-hcC--cEEEEEeCceEEecCCHHHHHHHHHHH
Q 046608 170 NKINAGIYLLNPSVLDRIELK-PTSIEKEVFPEIA-VEN--KLFAMVLPGFWMDIGQPKDYITGLRLY 233 (256)
Q Consensus 170 ~~~~~Giy~~~~~~~~~l~~~-~~~~~~~~~~~l~-~~~--~v~~~~~~~~~~di~t~~d~~~a~~~~ 233 (256)
....+|.+.++.++++.+.-. .+.++.+++-.+. ..| .+.-+++...........++..--.++
T Consensus 192 ~dp~sG~~a~rr~~l~~l~~~~~yg~e~~~l~~~~~~~g~~~i~~V~l~~r~h~~~~~~~~~~m~~~i 259 (306)
T PRK13915 192 VQPLGGEYAGRRELLESLPFVPGYGVEIGLLIDTLDRLGLDAIAQVDLGVRAHRNQPLRALGRMARQI 259 (306)
T ss_pred cCcchHhHHHHHHHHHhCCCCCCCeehHHHHHHHHHHhCcCceEEEEecccccCCCCHHHHHHHHHHH
Confidence 122367788999998876422 2334445555444 223 344444433333344555555443433
No 159
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.38 E-value=9.5 Score=29.70 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=53.6
Q ss_pred cchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
.+.|...|+.+.+.. ..+|+|+-+...+...+.+++. ++.+ .. ...|.+.+.-.++.....+ .++++
T Consensus 11 ~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~----~~~~--~~--~~~g~~~a~n~g~~~a~~~---~i~~~ 79 (221)
T cd02522 11 AENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSA----GVVV--IS--SPKGRARQMNAGAAAARGD---WLLFL 79 (221)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcC----CeEE--Ee--CCcCHHHHHHHHHHhccCC---EEEEE
Confidence 346778888777653 3567777655455555555541 3333 22 2345666666677776654 89999
Q ss_pred eCCeecccc-hHHHHHHHHhcC
Q 046608 109 NSDVISEYP-LKQMIEFHRGHG 129 (256)
Q Consensus 109 ~~D~~~~~~-~~~~~~~~~~~~ 129 (256)
.+|..+..+ +.+++......+
T Consensus 80 D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 80 HADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred cCCCCCChhHHHHHHHHhhcCC
Confidence 999977655 667655544443
No 160
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=88.25 E-value=6.4 Score=37.37 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=62.3
Q ss_pred cceeCCcc--hHHHHHHHHHHcC-C-C--EEEEEccCChH-------H-------HHHHHHhhhhccCcEEEeeccCCcC
Q 046608 25 LVDFANKP--MILHQIEALKAVG-V-T--EVVLAINYQPE-------V-------MLNFLKEFEKKLEIKITCSQETEPL 84 (256)
Q Consensus 25 ll~i~g~p--li~~~l~~l~~~~-i-~--~i~vv~~~~~~-------~-------i~~~~~~~~~~~~~~v~~~~~~~~~ 84 (256)
++|.-|.+ ++...++.+.+.. . + +|+|+-....+ . -.+.+++..++.++..+... .+..
T Consensus 136 iIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~-~n~~ 214 (713)
T TIGR03030 136 FIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRP-RNVH 214 (713)
T ss_pred EEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECC-CCCC
Confidence 45556665 6677888887654 2 2 56666532111 0 11233333334455554322 2233
Q ss_pred CCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 85 GTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 85 g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+-++++-.+++..+.+ .++++++|++...+ +.+++..+.+.. +..++.
T Consensus 215 ~KAgnLN~al~~a~gd---~Il~lDAD~v~~pd~L~~~v~~f~~dp-~v~~Vq 263 (713)
T TIGR03030 215 AKAGNINNALKHTDGE---LILIFDADHVPTRDFLQRTVGWFVEDP-KLFLVQ 263 (713)
T ss_pred CChHHHHHHHHhcCCC---EEEEECCCCCcChhHHHHHHHHHHhCC-CEEEEe
Confidence 4567788888887765 89999999987766 677777665443 344443
No 161
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=87.56 E-value=6.7 Score=26.38 Aligned_cols=79 Identities=10% Similarity=0.077 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeecc-CCcCCCcHHHHHHH-hhhcCCCCCcEEEE
Q 046608 31 KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQE-TEPLGTAGPLALAR-DKLIDDSGEPFFVL 108 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~-~~~~g~~~s~~~~~-~~i~~~~~~~~lv~ 108 (256)
-++|...|......|+++++|+.....+...+.++++. ++.+..... ............++ .... +.++++.+
T Consensus 4 ~~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~---~v~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~dWvl~~ 78 (97)
T PF13704_consen 4 ADYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALP---GVGIIRWVDPYRDERRQRAWRNALIERAF--DADWVLFL 78 (97)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCC---CcEEEEeCCCccchHHHHHHHHHHHHhCC--CCCEEEEE
Confidence 35788888888888999999998777777777777653 344443322 11111112222222 2222 22389999
Q ss_pred eCCeec
Q 046608 109 NSDVIS 114 (256)
Q Consensus 109 ~~D~~~ 114 (256)
.+|-++
T Consensus 79 D~DEfl 84 (97)
T PF13704_consen 79 DADEFL 84 (97)
T ss_pred eeeEEE
Confidence 999954
No 162
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=86.10 E-value=11 Score=34.16 Aligned_cols=95 Identities=6% Similarity=0.034 Sum_probs=54.9
Q ss_pred CCcchHHHHHHHH-HHcCC--CEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhh------c
Q 046608 29 ANKPMILHQIEAL-KAVGV--TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKL------I 98 (256)
Q Consensus 29 ~g~pli~~~l~~l-~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i------~ 98 (256)
++...|...|+.+ ....- -+|+|+...+.+...+.++....++ +++++......+.+-+.++-.+.+.+ .
T Consensus 76 NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~ 155 (504)
T PRK14716 76 READVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERER 155 (504)
T ss_pred CchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 4557889999875 33322 2677776555444444444332222 35544444444556677776676654 2
Q ss_pred CCCCCcEEEEeCCeecccchHHHHH
Q 046608 99 DDSGEPFFVLNSDVISEYPLKQMIE 123 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~~~~~~~ 123 (256)
....|.++++++|.+.+++.-+.+.
T Consensus 156 G~~~d~vvi~DAD~~v~Pd~Lr~~~ 180 (504)
T PRK14716 156 GIRFAIIVLHDAEDVIHPLELRLYN 180 (504)
T ss_pred CCCcCEEEEEcCCCCcCccHHHHHH
Confidence 2111389999999988877444444
No 163
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=84.70 E-value=12 Score=31.28 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=63.4
Q ss_pred ceeCCcchHHHHHHHHHHcCC-C-EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 26 VDFANKPMILHQIEALKAVGV-T-EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 26 l~i~g~pli~~~l~~l~~~~i-~-~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
..++....+...++.+.+... . .++++.+...+...+.++... ..++.++ ...+-.|-+++.-.+.........+
T Consensus 10 v~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-~~~v~~i--~~~~NlG~agg~n~g~~~a~~~~~~ 86 (305)
T COG1216 10 VTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-FPNVRLI--ENGENLGFAGGFNRGIKYALAKGDD 86 (305)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-CCcEEEE--EcCCCccchhhhhHHHHHHhcCCCc
Confidence 334566677888888888753 3 333344444444444454421 1134444 4445567677776666666443222
Q ss_pred cEEEEeCCeecccc-hHHHHHHHHhcCCceE
Q 046608 104 PFFVLNSDVISEYP-LKQMIEFHRGHGGEAS 133 (256)
Q Consensus 104 ~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~ 133 (256)
++++++-|.+.+.+ +.++++.+.+.+..+.
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~ 117 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGV 117 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeE
Confidence 59999999877766 8899998887765443
No 164
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=82.36 E-value=25 Score=28.64 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=36.5
Q ss_pred CcEEEeeccCCcCCCc-HHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 72 EIKITCSQETEPLGTA-GPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 72 ~~~v~~~~~~~~~g~~-~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
+..+.+....+..|.. ..+..++...... .+.++++++|...+.+ +.+++..+.... ...++.
T Consensus 66 ~~~v~~~~r~~~~g~Kag~l~~~~~~~~~~-~~~i~~~DaD~~~~p~~l~~~v~~~~~~~-~vg~vq 130 (254)
T cd04191 66 QGRIYYRRRRENTGRKAGNIADFCRRWGSR-YDYMVVLDADSLMSGDTIVRLVRRMEANP-RAGIIQ 130 (254)
T ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHhCCC-CCEEEEEeCCCCCCHHHHHHHHHHHHhCC-CEEEEe
Confidence 3455555555444543 4444454443222 2289999999987766 788888765433 344444
No 165
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=82.26 E-value=8.7 Score=29.93 Aligned_cols=87 Identities=23% Similarity=0.205 Sum_probs=48.4
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCC-CEEEEEccCC-hHHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV-TEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i-~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~ 78 (256)
|+.+||+.|.||.|.- +++.+..-.+ -+|..|.+.+ .....+..++. ++.....
T Consensus 1 ~ki~VlaSG~GSNlqa--------------------iida~~~~~~~a~i~~Visd~~~A~~lerA~~~----gIpt~~~ 56 (200)
T COG0299 1 KKIAVLASGNGSNLQA--------------------IIDAIKGGKLDAEIVAVISDKADAYALERAAKA----GIPTVVL 56 (200)
T ss_pred CeEEEEEeCCcccHHH--------------------HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHc----CCCEEEe
Confidence 5789999999998844 5566653322 3555555444 33333444332 6655433
Q ss_pred ccCCcCC---CcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc
Q 046608 79 QETEPLG---TAGPLALARDKLIDDSGEPFFVLNSDV-ISE 115 (256)
Q Consensus 79 ~~~~~~g---~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~ 115 (256)
......+ .-.++...++..+. .++++.|-+ +..
T Consensus 57 ~~k~~~~r~~~d~~l~~~l~~~~~----dlvvLAGyMrIL~ 93 (200)
T COG0299 57 DRKEFPSREAFDRALVEALDEYGP----DLVVLAGYMRILG 93 (200)
T ss_pred ccccCCCHHHHHHHHHHHHHhcCC----CEEEEcchHHHcC
Confidence 3222212 12345555555555 499999998 555
No 166
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=80.21 E-value=3.8 Score=36.14 Aligned_cols=80 Identities=18% Similarity=0.367 Sum_probs=52.2
Q ss_pred cEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecC--CCcCceeEEEcCCCC---------eEeEEeecCCC------
Q 046608 104 PFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETMG---------KVEKFVEKPKN------ 166 (256)
Q Consensus 104 ~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~~---------~v~~~~ek~~~------ 166 (256)
-++|..+|+++...-...+. -...++++++.+.. -.+++|+.+.|++ + .|.++.-||..
T Consensus 55 Gv~V~s~D~vl~~~~~~~~~---~~~~g~~~la~p~~~~~at~HGVfv~~~~-~~~~~~~~~~~v~~~L~KpS~eem~~~ 130 (414)
T PF07959_consen 55 GVLVCSGDMVLSVPDDPLID---WDEPGVTALAHPSSLEYATNHGVFVLDRQ-GPDEEDLEYREVKDFLQKPSEEEMRAS 130 (414)
T ss_pred ceEEEecccccccCccccCC---CCCCCEEEEEeeCCHHHhcCCeEEEeCCC-CCccccchhhhHHHhhcCCCHHHHHhC
Confidence 38999999644322112222 12256777777764 3588999999998 6 68888878752
Q ss_pred -----CCCCeEEEEEEEeCHhhHHhc
Q 046608 167 -----FVGNKINAGIYLLNPSVLDRI 187 (256)
Q Consensus 167 -----~~~~~~~~Giy~~~~~~~~~l 187 (256)
......++|++.|+.+..+.|
T Consensus 131 ~av~~~~~~~ldsG~~~~s~~~~e~L 156 (414)
T PF07959_consen 131 GAVLPDGNVLLDSGIVFFSSKAVESL 156 (414)
T ss_pred CcccCCCcccccccceeccHHHHHHH
Confidence 112266899999998776644
No 167
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=80.12 E-value=4.3 Score=39.56 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=76.4
Q ss_pred cEEEEeCCeecc--cchHHHHHHHHhcCCceEEEEEecC--CCcCceeEEEcCCC-CeEeEEeecCCC--------CCCC
Q 046608 104 PFFVLNSDVISE--YPLKQMIEFHRGHGGEASIMVTKVD--EPSKYGVVVMEETM-GKVEKFVEKPKN--------FVGN 170 (256)
Q Consensus 104 ~~lv~~~D~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~v~~~~~~-~~v~~~~ek~~~--------~~~~ 170 (256)
.++|..||.+.. ..... -+..++++++.+.+ -.+++|+.+.+.+. +.+..+.-||.- ....
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~ 227 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLF 227 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeE
Confidence 489999997432 22222 23356666665553 35789999988752 366677777762 1223
Q ss_pred eEEEEEEEeCHhhHHhcccC----------CCCcchhhHHHHHh----------cCcEEEEEeCc-eEEecCCHHHHHHH
Q 046608 171 KINAGIYLLNPSVLDRIELK----------PTSIEKEVFPEIAV----------ENKLFAMVLPG-FWMDIGQPKDYITG 229 (256)
Q Consensus 171 ~~~~Giy~~~~~~~~~l~~~----------~~~~~~~~~~~l~~----------~~~v~~~~~~~-~~~di~t~~d~~~a 229 (256)
+.++|+|.|+.+++..|.+. ..++..|+...|-. .-++..++..+ .|+-+||-.+|...
T Consensus 228 l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~ 307 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISS 307 (974)
T ss_pred EEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcC
Confidence 88999999999887765421 12333444444222 23566777766 79999999999964
No 168
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=75.38 E-value=57 Score=28.71 Aligned_cols=133 Identities=22% Similarity=0.288 Sum_probs=75.7
Q ss_pred EEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHHc----CCC-EEEEEccCC-hHHHHHHHHhhhhccCcEE
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAV----GVT-EVVLAINYQ-PEVMLNFLKEFEKKLEIKI 75 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~~----~i~-~i~vv~~~~-~~~i~~~~~~~~~~~~~~v 75 (256)
++=|-||.|+-|+. ..||.++++ .|.+.|+-++++.+.. +++ -.++..+.+ .+.....+++|... ++++
T Consensus 106 vlKLNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~-kv~i 181 (498)
T KOG2638|consen 106 VLKLNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGS-KVDI 181 (498)
T ss_pred EEEecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCC-ceeE
Confidence 45567999999999 789999999 7888888777666544 232 234444544 56677777776421 2322
Q ss_pred Eeecc-------------------------CCcCCCcH---HHHH--HHhhhcCCCCCcEEEEeCCeecccchHHHHHHH
Q 046608 76 TCSQE-------------------------TEPLGTAG---PLAL--ARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFH 125 (256)
Q Consensus 76 ~~~~~-------------------------~~~~g~~~---s~~~--~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~ 125 (256)
.-..| |-+-|.+. |+.. .++.+=.++-|+++|...|.+-..-=..++++.
T Consensus 182 ~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~ILn~~ 261 (498)
T KOG2638|consen 182 KTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLNILNHV 261 (498)
T ss_pred EEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHHHHHHH
Confidence 21111 11223332 2221 122222223348999999996432113455555
Q ss_pred HhcCCceEEEEEec
Q 046608 126 RGHGGEASIMVTKV 139 (256)
Q Consensus 126 ~~~~~~~~i~~~~~ 139 (256)
...+.+..|=+++.
T Consensus 262 i~~~~ey~MEvTdK 275 (498)
T KOG2638|consen 262 INNNIEYLMEVTDK 275 (498)
T ss_pred hcCCCceEEEeccc
Confidence 66677766655544
No 169
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=74.74 E-value=30 Score=31.05 Aligned_cols=94 Identities=24% Similarity=0.344 Sum_probs=57.5
Q ss_pred CCCCccceeCC------cchHHHHHHHHHHc---CCCEEEEEccCChH-HHHHHH----HhhhhccCcE--EEeeccCC-
Q 046608 20 SVPKPLVDFAN------KPMILHQIEALKAV---GVTEVVLAINYQPE-VMLNFL----KEFEKKLEIK--ITCSQETE- 82 (256)
Q Consensus 20 ~~pK~ll~i~g------~pli~~~l~~l~~~---~i~~i~vv~~~~~~-~i~~~~----~~~~~~~~~~--v~~~~~~~- 82 (256)
+.||.|+|+.. .|+=+|+.+...=+ |..++-+.+++.+. ...+.+ ..+..+++++ |.++.|..
T Consensus 165 ~lPKGLl~FH~Y~~~~rTp~EEHL~Eaa~Ya~~~g~~~lHFTVS~eH~~~F~~~~~~~~~~~e~~~~v~f~IsfS~Qk~s 244 (513)
T PF14134_consen 165 NLPKGLLPFHKYPDGIRTPFEEHLVEAALYAKSNGKANLHFTVSPEHLDLFKKEVEEVKPKYEKKYGVKFEISFSEQKPS 244 (513)
T ss_pred CCCceeeecccCCCCCcCcHHHHHHHHHHHHhcCCeEEEEEeeCHHHHHHHHHHHHHHHHHHHHhhCceEEEEecccCCC
Confidence 58999999964 48999999976443 45677787876642 223333 2333334443 33333311
Q ss_pred ---------------cCC-------CcHHHHHHHhhhcCCCCCcEEEEeCCeeccc
Q 046608 83 ---------------PLG-------TAGPLALARDKLIDDSGEPFFVLNSDVISEY 116 (256)
Q Consensus 83 ---------------~~g-------~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~ 116 (256)
..| -=+|+..-++.+..+ -++|=.-|.+.+.
T Consensus 245 TDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNLN~ldaD---iIFIKNIDNVvpd 297 (513)
T PF14134_consen 245 TDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENLNDLDAD---IIFIKNIDNVVPD 297 (513)
T ss_pred CCeeEECCCCCccCCCCCCEEeCCCcchHHHhhhccccCC---EEEEeCccccCCc
Confidence 111 115677777777776 7888899997753
No 170
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=74.49 E-value=30 Score=28.78 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcC-----CC-EEEEEccCChHHHHHHHHhhhhccCc-EEEeeccCCcCCCcHHHHHHHhhhcCCCCCcE
Q 046608 33 MILHQIEALKAVG-----VT-EVVLAINYQPEVMLNFLKEFEKKLEI-KITCSQETEPLGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 33 li~~~l~~l~~~~-----i~-~i~vv~~~~~~~i~~~~~~~~~~~~~-~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
|++-.++.+..-- ++ +++||.....+...+..-++..+.+. .+.....-...|-++++..++.....+ ..
T Consensus 85 mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~---~i 161 (323)
T KOG2977|consen 85 MLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQ---KI 161 (323)
T ss_pred HHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCc---eE
Confidence 7888887776541 33 45555544445555555555534332 222234445667778888888888776 68
Q ss_pred EEEeCCeecc-cchHHHHHH
Q 046608 106 FVLNSDVISE-YPLKQMIEF 124 (256)
Q Consensus 106 lv~~~D~~~~-~~~~~~~~~ 124 (256)
++.++|-.+. .|+..+..+
T Consensus 162 lfadAdGaTkf~d~ekLe~a 181 (323)
T KOG2977|consen 162 LFADADGATKFADLEKLEKA 181 (323)
T ss_pred EEEcCCCCccCCCHHHHHHH
Confidence 8888888543 345544443
No 171
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=74.33 E-value=6.9 Score=33.54 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=43.4
Q ss_pred ccccCCCCCCCccceeCCcc-hHHHHHHHHHHc-CCCEEEEEccCC--hHHHHHHHHhh
Q 046608 13 RLRPLTLSVPKPLVDFANKP-MILHQIEALKAV-GVTEVVLAINYQ--PEVMLNFLKEF 67 (256)
Q Consensus 13 Rl~~~~~~~pK~ll~i~g~p-li~~~l~~l~~~-~i~~i~vv~~~~--~~~i~~~~~~~ 67 (256)
+++++....+.-++.+.++| .|.++|+.|+++ ||++..+|.+++ .+++.+.+++.
T Consensus 24 ~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~I 82 (356)
T PF05060_consen 24 KFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQSI 82 (356)
T ss_pred hcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHhC
Confidence 45555556677778888887 888999999998 799999999877 57788887754
No 172
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=74.17 E-value=41 Score=32.17 Aligned_cols=99 Identities=7% Similarity=0.033 Sum_probs=58.7
Q ss_pred CCcchHHHHHHHHHH-cC-C-CEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcC-----
Q 046608 29 ANKPMILHQIEALKA-VG-V-TEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLID----- 99 (256)
Q Consensus 29 ~g~pli~~~l~~l~~-~~-i-~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~----- 99 (256)
+....+..+++.+.. .. . -+|++++..+.+...+.++....++ +++++......+.|-+.++-.+++.+..
T Consensus 73 nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~~ 152 (727)
T PRK11234 73 NETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSA 152 (727)
T ss_pred cchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhccc
Confidence 345688888887642 22 2 3777776555444344444433332 3555444444466788888888887721
Q ss_pred -CCCCcEEEEeCCeecccchHHHHHHHHh
Q 046608 100 -DSGEPFFVLNSDVISEYPLKQMIEFHRG 127 (256)
Q Consensus 100 -~~~~~~lv~~~D~~~~~~~~~~~~~~~~ 127 (256)
...+.++++++|.+.+++.-++++.+..
T Consensus 153 ~~~~~vvvi~DAD~~v~pd~L~~~~~l~~ 181 (727)
T PRK11234 153 NFAFAGFILHDAEDVISPMELRLFNYLVE 181 (727)
T ss_pred CCcccEEEEEcCCCCCChhHHHHHHhhcC
Confidence 1112578899999888775445554443
No 173
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=68.91 E-value=26 Score=24.71 Aligned_cols=53 Identities=26% Similarity=0.327 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCC
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g 85 (256)
-+..+++++.+.++++|++.+++. .+.+..++.+.-+..++++....+.-+.|
T Consensus 44 ~i~~L~~ri~~~~i~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA~GiP~G 98 (112)
T cd01025 44 NIDKLLERIAKGQVKEVILATNPTVEGEATALYIAKLLKDFGVKVTRLAQGIPVG 98 (112)
T ss_pred CHHHHHHHHhcCCCcEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEEEcCCCC
Confidence 577778888888899999999877 45666666655444466665444443433
No 174
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=68.15 E-value=31 Score=25.69 Aligned_cols=90 Identities=12% Similarity=0.124 Sum_probs=57.1
Q ss_pred CCcchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 29 ANKPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
+....|..+|+.+.+... .+++||-+...+...+.+..+.... ..+.........|.+.+...+......+ .++
T Consensus 13 n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~ 88 (291)
T COG0463 13 NEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKD-VRVIRLINERNGGLGAARNAGLEYARGD---YIV 88 (291)
T ss_pred chhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhc-ceEEEeecccCCChHHHHHhhHHhccCC---EEE
Confidence 344678888888877642 2566666655555555555543221 1233333445678888888888888775 899
Q ss_pred EEeCCeecccc-hHHHHH
Q 046608 107 VLNSDVISEYP-LKQMIE 123 (256)
Q Consensus 107 v~~~D~~~~~~-~~~~~~ 123 (256)
.+.+|.+ ..+ +..+.+
T Consensus 89 ~~d~d~~-~~~~~~~~~~ 105 (291)
T COG0463 89 FLDADDQ-HPPELIPLVA 105 (291)
T ss_pred EEccCCC-CCHHHHHHHH
Confidence 9999999 654 444333
No 175
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=67.95 E-value=52 Score=26.34 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=20.6
Q ss_pred CcEEEEeCCeecccc-hHHHHHHHHhc
Q 046608 103 EPFFVLNSDVISEYP-LKQMIEFHRGH 128 (256)
Q Consensus 103 ~~~lv~~~D~~~~~~-~~~~~~~~~~~ 128 (256)
+.++++++|.+.+.+ +.++++.+...
T Consensus 75 e~i~~~DaD~~~~~~~l~~l~~~~~~~ 101 (244)
T cd04190 75 EFILLVDADTKFDPDSIVQLYKAMDKD 101 (244)
T ss_pred CEEEEECCCCcCCHhHHHHHHHHHHhC
Confidence 389999999988877 78888776543
No 176
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=67.59 E-value=19 Score=25.71 Aligned_cols=84 Identities=20% Similarity=0.168 Sum_probs=38.2
Q ss_pred HHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--ec
Q 046608 38 IEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--IS 114 (256)
Q Consensus 38 l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--~~ 114 (256)
|+.+.+...-++++...+. .....+.+... . ++.+ ..| ...+-+..+..+.... ..+.+.++++.+|. +.
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~--~~~~--~~Q-~g~dLG~Rm~~a~~~~-~~g~~~vvliGsD~P~l~ 74 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLP-S--GFSF--FPQ-QGGDLGERMANAFQQA-ARGYEPVVLIGSDCPDLT 74 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH--T--TSEE--EE---SSSHHHHHHHHHHHH-HTT-SEEEEE-SS-TT--
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccC-C--CCEE--eec-CCCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCCCC
Confidence 4556666544555555433 33333221111 1 3333 344 3456678888888887 22223899999999 44
Q ss_pred ccchHHHHHHHHhc
Q 046608 115 EYPLKQMIEFHRGH 128 (256)
Q Consensus 115 ~~~~~~~~~~~~~~ 128 (256)
...+.+..+.+..+
T Consensus 75 ~~~l~~A~~~L~~~ 88 (122)
T PF09837_consen 75 PDDLEQAFEALQRH 88 (122)
T ss_dssp HHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHhccC
Confidence 45577777765544
No 177
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=67.44 E-value=63 Score=25.86 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=62.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE 82 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~ 82 (256)
.+++|.|.-..|.. . ++ -+--.++|..++..+... .++-|++ +..+++....++|..- ...+.+..-..
T Consensus 91 illlCTG~F~~l~~---~--~~--lleP~ril~~lV~al~~~--~~vGViv-P~~eQ~~~~~~kW~~l-~~~~~~a~asP 159 (221)
T PF07302_consen 91 ILLLCTGEFPGLTA---R--NP--LLEPDRILPPLVAALVGG--HQVGVIV-PLPEQIAQQAEKWQPL-GNPVVVAAASP 159 (221)
T ss_pred EEEeccCCCCCCCC---C--cc--eeehHHhHHHHHHHhcCC--CeEEEEe-cCHHHHHHHHHHHHhc-CCCeEEEEeCC
Confidence 35567776544433 2 22 233355777777777654 5666655 4456666666666432 34455444454
Q ss_pred cCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHH
Q 046608 83 PLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIE 123 (256)
Q Consensus 83 ~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~ 123 (256)
+.|+.+.+..|...+...+. .+++++|=-+. ...+++++
T Consensus 160 y~~~~~~l~~Aa~~L~~~ga-dlIvLDCmGYt-~~~r~~~~ 198 (221)
T PF07302_consen 160 YEGDEEELAAAARELAEQGA-DLIVLDCMGYT-QEMRDIVQ 198 (221)
T ss_pred CCCCHHHHHHHHHHHHhcCC-CEEEEECCCCC-HHHHHHHH
Confidence 55888899888888874432 58888774433 33444544
No 178
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=65.21 E-value=89 Score=26.78 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=49.1
Q ss_pred eeCCcc-hHHHHHHHHHHcC----CCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC--CcCC----------CcHH
Q 046608 27 DFANKP-MILHQIEALKAVG----VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET--EPLG----------TAGP 89 (256)
Q Consensus 27 ~i~g~p-li~~~l~~l~~~~----i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~g----------~~~s 89 (256)
...|+| -+.++|+.+.++. ..+++|+..-..+...+.++.+.. .++.+..... ...| -+..
T Consensus 7 ~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~--~i~~i~~~~~~~~~~~~~~~~~~y~~ia~h 84 (334)
T cd02514 7 IACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGD--GVTHIQHPPISIKNVNPPHKFQGYYRIARH 84 (334)
T ss_pred EecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhcc--ccEEEEcccccccccCcccccchhhHHHHH
Confidence 346777 6999999998873 456666653334445566655421 2332211111 1111 1221
Q ss_pred HHHHHhhh-cCCCCCcEEEEeCCeecccchHHHH
Q 046608 90 LALARDKL-IDDSGEPFFVLNSDVISEYPLKQMI 122 (256)
Q Consensus 90 ~~~~~~~i-~~~~~~~~lv~~~D~~~~~~~~~~~ 122 (256)
+..|++.+ ...+.+.++++-.|++..+++-..+
T Consensus 85 yk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf 118 (334)
T cd02514 85 YKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYF 118 (334)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHH
Confidence 12244333 2211228999999998888854433
No 179
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=64.14 E-value=1.3e+02 Score=28.57 Aligned_cols=110 Identities=16% Similarity=0.159 Sum_probs=56.4
Q ss_pred cceeCCcch------HHHHHHHHHHcC-C--CEEEEEccCChHHHHH----HHHhhhhcc--CcEEEeeccC-CcCCCcH
Q 046608 25 LVDFANKPM------ILHQIEALKAVG-V--TEVVLAINYQPEVMLN----FLKEFEKKL--EIKITCSQET-EPLGTAG 88 (256)
Q Consensus 25 ll~i~g~pl------i~~~l~~l~~~~-i--~~i~vv~~~~~~~i~~----~~~~~~~~~--~~~v~~~~~~-~~~g~~~ 88 (256)
++|+.|... |+-.++.+...+ . -+++++.....+.+.. .+.....++ +.++.+.... +...-++
T Consensus 129 liP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaG 208 (691)
T PRK05454 129 LMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAG 208 (691)
T ss_pred EEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHH
Confidence 455666653 555555555443 2 2566665443333221 122222222 2344444332 2222344
Q ss_pred HHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEE
Q 046608 89 PLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 89 s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~ 136 (256)
.+.......+.+. |+++++++|++...+ +.+++..+... ....++.
T Consensus 209 Nl~~~~~~~~~~~-eyivvLDADs~m~~d~L~~lv~~m~~d-P~vGlVQ 255 (691)
T PRK05454 209 NIADFCRRWGGAY-DYMVVLDADSLMSGDTLVRLVRLMEAN-PRAGLIQ 255 (691)
T ss_pred HHHHHHHhcCCCc-CEEEEEcCCCCCCHHHHHHHHHHHhhC-cCEEEEe
Confidence 5555555554422 389999999987766 78888766543 3344444
No 180
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=63.51 E-value=57 Score=25.36 Aligned_cols=87 Identities=20% Similarity=0.137 Sum_probs=42.6
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCC-CEEEEE-ccCChHHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV-TEVVLA-INYQPEVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i-~~i~vv-~~~~~~~i~~~~~~~~~~~~~~v~~~ 78 (256)
|+..|+|.|.|+-+.+ +++.+.+.+. -+|.+| +++......++.++ .++++...
T Consensus 1 ~riail~sg~gs~~~~--------------------ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~----~gip~~~~ 56 (190)
T TIGR00639 1 KRIVVLISGNGSNLQA--------------------IIDACKEGKIPASVVLVISNKPDAYGLERAAQ----AGIPTFVL 56 (190)
T ss_pred CeEEEEEcCCChhHHH--------------------HHHHHHcCCCCceEEEEEECCccchHHHHHHH----cCCCEEEE
Confidence 6778888887776644 4444554432 345544 44333333333333 36766532
Q ss_pred ccCCcC---CCcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc
Q 046608 79 QETEPL---GTAGPLALARDKLIDDSGEPFFVLNSDV-ISE 115 (256)
Q Consensus 79 ~~~~~~---g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~ 115 (256)
....-. .....+...+...+.+ ++++.+-. +++
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~~~~D----~iv~~~~~~il~ 93 (190)
T TIGR00639 57 SLKDFPSREAFDQAIIEELRAHEVD----LVVLAGFMRILG 93 (190)
T ss_pred CccccCchhhhhHHHHHHHHhcCCC----EEEEeCcchhCC
Confidence 211111 1123444555555554 66666654 665
No 181
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=62.71 E-value=35 Score=26.99 Aligned_cols=86 Identities=21% Similarity=0.142 Sum_probs=43.9
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcC--CCEEEEEccCChHHHHHHHHhhhhccCcEEEeec
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVG--VTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQ 79 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~ 79 (256)
+.+|||.|.|+-|.. +++.+++-. .+-+.|+++.......+..++. ++++....
T Consensus 1 ki~vl~Sg~Gsn~~a--------------------l~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~----gIp~~~~~ 56 (207)
T PLN02331 1 KLAVFVSGGGSNFRA--------------------IHDACLDGRVNGDVVVVVTNKPGCGGAEYAREN----GIPVLVYP 56 (207)
T ss_pred CEEEEEeCCChhHHH--------------------HHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHh----CCCEEEec
Confidence 467888998888744 444444443 2334444444444444444443 67665332
Q ss_pred cCCc--CC-CcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc
Q 046608 80 ETEP--LG-TAGPLALARDKLIDDSGEPFFVLNSDV-ISE 115 (256)
Q Consensus 80 ~~~~--~g-~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~ 115 (256)
.... .. ....+...+...+.+ ++|+.|-+ +++
T Consensus 57 ~~~~~~~~~~~~~~~~~l~~~~~D----liv~agy~~il~ 92 (207)
T PLN02331 57 KTKGEPDGLSPDELVDALRGAGVD----FVLLAGYLKLIP 92 (207)
T ss_pred cccCCCcccchHHHHHHHHhcCCC----EEEEeCcchhCC
Confidence 2111 11 123444555555553 77777765 555
No 182
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=61.86 E-value=46 Score=26.07 Aligned_cols=87 Identities=21% Similarity=0.177 Sum_probs=42.9
Q ss_pred CeEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCC-CEEEEE-ccCChHHHHHHHHhhhhccCcEEEee
Q 046608 1 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGV-TEVVLA-INYQPEVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 1 m~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i-~~i~vv-~~~~~~~i~~~~~~~~~~~~~~v~~~ 78 (256)
||..|+|+|.|+-+.+ +++.+.+.++ -+|.++ +........++.. +.++++...
T Consensus 2 ~ki~vl~sg~gs~~~~--------------------ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~----~~gIp~~~~ 57 (200)
T PRK05647 2 KRIVVLASGNGSNLQA--------------------IIDACAAGQLPAEIVAVISDRPDAYGLERAE----AAGIPTFVL 57 (200)
T ss_pred ceEEEEEcCCChhHHH--------------------HHHHHHcCCCCcEEEEEEecCccchHHHHHH----HcCCCEEEE
Confidence 6788888888776644 4444555432 345544 4433333333333 336776542
Q ss_pred ccCCcCC---CcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc
Q 046608 79 QETEPLG---TAGPLALARDKLIDDSGEPFFVLNSDV-ISE 115 (256)
Q Consensus 79 ~~~~~~g---~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~ 115 (256)
......+ ....+...+...+.+ ++|+.+-. +++
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~~~~~D----~iv~~~~~~ii~ 94 (200)
T PRK05647 58 DHKDFPSREAFDAALVEALDAYQPD----LVVLAGFMRILG 94 (200)
T ss_pred CccccCchhHhHHHHHHHHHHhCcC----EEEhHHhhhhCC
Confidence 2111111 123444445555553 66665543 555
No 183
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=61.27 E-value=94 Score=25.74 Aligned_cols=96 Identities=8% Similarity=0.016 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCC
Q 046608 32 PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD 111 (256)
Q Consensus 32 pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D 111 (256)
.-|+..++.+.++ ++|++........+.+++...-.+.|.++....+. +.....+..++.+ .+++.-+-
T Consensus 118 ~~l~~av~~L~~A--~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~------~~~~~~~~~~~~~---Dv~i~iS~ 186 (281)
T COG1737 118 EALERAVELLAKA--RRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDT------HGQLMQLALLTPG---DVVIAISF 186 (281)
T ss_pred HHHHHHHHHHHcC--CeEEEEEechhHHHHHHHHHHHHHcCCceeEecch------HHHHHHHHhCCCC---CEEEEEeC
Confidence 4566777777776 67888776666666666665545556766544322 2222234445554 58888777
Q ss_pred eecccchHHHHHHHHhcCCceEEEEEe
Q 046608 112 VISEYPLKQMIEFHRGHGGEASIMVTK 138 (256)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~i~~~~ 138 (256)
.-+...+.+.++..++.++..+.++..
T Consensus 187 sG~t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 187 SGYTREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEcCC
Confidence 777777888888888888765555433
No 184
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.46 E-value=60 Score=25.38 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCC
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g 85 (256)
-|..+++++.+-++++|++.+++. .+....++.+.-+.+++++.-..+.-+.|
T Consensus 122 ~i~~L~~Ri~~~~v~EVIlAt~~tvEGe~Ta~yi~~~lk~~~ikvtRlA~GiP~G 176 (195)
T TIGR00615 122 TIAALLKRLQEESVKEVILATNPTVEGEATALYIARLLQPFGVKVTRIASGLPVG 176 (195)
T ss_pred CHHHHHHHHhcCCCcEEEEeCCCCchHHHHHHHHHHHhhhcCCcEEeeeecCCCC
Confidence 567777888777799999999877 45566666655444567776554444444
No 185
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=59.85 E-value=76 Score=24.22 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=50.8
Q ss_pred CccceeC---CcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 23 KPLVDFA---NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 23 K~ll~i~---g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
-.|+++. +.|=+...++.+..+|+ .++|+.+.....+....+.. ++.+++. ...=.+.++..|+..++-
T Consensus 37 NTLv~wd~~~~tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~l----~v~fi~~---A~KP~~~~fr~Al~~m~l 108 (175)
T COG2179 37 NTLVPWDNPDATPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEKL----GVPFIYR---AKKPFGRAFRRALKEMNL 108 (175)
T ss_pred CceecccCCCCCHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhhc----CCceeec---ccCccHHHHHHHHHHcCC
Confidence 3455663 34667777777888876 46666665555555554433 5666532 122345778888888766
Q ss_pred CCCCcEEEEeCCeecc
Q 046608 100 DSGEPFFVLNSDVISE 115 (256)
Q Consensus 100 ~~~~~~lv~~~D~~~~ 115 (256)
.. .=+++-||.++.
T Consensus 109 ~~--~~vvmVGDqL~T 122 (175)
T COG2179 109 PP--EEVVMVGDQLFT 122 (175)
T ss_pred Ch--hHEEEEcchhhh
Confidence 43 346666888654
No 186
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=59.53 E-value=56 Score=27.62 Aligned_cols=82 Identities=10% Similarity=0.023 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCC---C--cEEE
Q 046608 35 LHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG---E--PFFV 107 (256)
Q Consensus 35 ~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~---~--~~lv 107 (256)
+-+++...+.+.+.|+|+.|+. .+.+++.++++ |+.+.-.. +....++...+...++.+-+ + .++|
T Consensus 65 es~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~----GitV~Rig---G~nR~ETa~~v~~~~~~~yp~af~n~kvvv 137 (337)
T COG2247 65 ESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSL----GITVKRIG---GANRYETAEKVAKFFREDYPNAFKNVKVVV 137 (337)
T ss_pred HHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhC----CcEEEEec---CcchHHHHHHHHHHHHhhchhhhcCeEEEE
Confidence 4456677777889999999887 46777788775 67775443 33333444444444432110 0 4566
Q ss_pred EeCCeecccchHHHHHHHHh
Q 046608 108 LNSDVISEYPLKQMIEFHRG 127 (256)
Q Consensus 108 ~~~D~~~~~~~~~~~~~~~~ 127 (256)
++|=.+- .++++..++
T Consensus 138 v~GwDy~----~~~~e~~k~ 153 (337)
T COG2247 138 VYGWDYA----DALMELMKE 153 (337)
T ss_pred EeccccH----HHHHHHHhc
Confidence 6553322 155555555
No 187
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=57.51 E-value=22 Score=22.57 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHh
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE 66 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~ 66 (256)
|+.|++++++.+.+.++..+.+.+......-.++.++
T Consensus 43 g~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 43 GSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp HHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH
T ss_pred chhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH
Confidence 4589999999999999999999998887665555544
No 188
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=56.16 E-value=52 Score=27.51 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHcCC-CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC-cCCC-cHHHHHHHhhhcCCCCCcEEEE
Q 046608 32 PMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE-PLGT-AGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 32 pli~~~l~~l~~~~i-~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~-~~g~-~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
+-++.+++....-.+ -+|.+|.+...+. .+..+ +.++++....... .... ...+...++..+.+ ++|+
T Consensus 105 ~nl~al~~~~~~~~l~~~i~~visn~~~~-~~~A~----~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~D----livl 175 (289)
T PRK13010 105 HCLNDLLYRWRMGELDMDIVGIISNHPDL-QPLAV----QHDIPFHHLPVTPDTKAQQEAQILDLIETSGAE----LVVL 175 (289)
T ss_pred ccHHHHHHHHHCCCCCcEEEEEEECChhH-HHHHH----HcCCCEEEeCCCcccccchHHHHHHHHHHhCCC----EEEE
Confidence 345556666655432 4566666554432 33333 3377776543221 1111 23455556666554 8888
Q ss_pred eCCe-ecc
Q 046608 109 NSDV-ISE 115 (256)
Q Consensus 109 ~~D~-~~~ 115 (256)
.|-+ ++.
T Consensus 176 agym~il~ 183 (289)
T PRK13010 176 ARYMQVLS 183 (289)
T ss_pred ehhhhhCC
Confidence 8887 555
No 189
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=55.92 E-value=1.6e+02 Score=28.18 Aligned_cols=100 Identities=7% Similarity=0.011 Sum_probs=58.9
Q ss_pred CCcchHHHHHHHHH-HcC--CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhh-c-----
Q 046608 29 ANKPMILHQIEALK-AVG--VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKL-I----- 98 (256)
Q Consensus 29 ~g~pli~~~l~~l~-~~~--i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i-~----- 98 (256)
+..-+|..+++.+. ... --+|++++..+.....+.+......+ .++++..+...+.|-+.++-.++..+ .
T Consensus 81 nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~l~~~~~~e~~~ 160 (703)
T PRK15489 81 KEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNWIIQAIFRYEAGH 160 (703)
T ss_pred CcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHHHHHhhhhhc
Confidence 45568999999864 332 23555555344444444444433332 45555556666788888888887775 1
Q ss_pred CCCCCcEEEEeCCeecccchHHHHHHHHhc
Q 046608 99 DDSGEPFFVLNSDVISEYPLKQMIEFHRGH 128 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~ 128 (256)
....+.+++.++|.+.+++.-+.++.+...
T Consensus 161 ~~~fa~vvi~DAEd~~~P~~L~~~~~~~~~ 190 (703)
T PRK15489 161 GIEFAGVILHDSEDVLHPLELKYFNYLLPR 190 (703)
T ss_pred cCccceEEEEcCCCCCChhHHHHHHhhcCC
Confidence 110013799999998887744444554433
No 190
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=54.81 E-value=24 Score=29.97 Aligned_cols=43 Identities=21% Similarity=0.439 Sum_probs=33.9
Q ss_pred cceeCCcc-hHHHHHHHHHHc-CCCEEEEEccCC--hHHHHHHHHhh
Q 046608 25 LVDFANKP-MILHQIEALKAV-GVTEVVLAINYQ--PEVMLNFLKEF 67 (256)
Q Consensus 25 ll~i~g~p-li~~~l~~l~~~-~i~~i~vv~~~~--~~~i~~~~~~~ 67 (256)
.+.+.++| .++.+++.++++ ||+++.++.+++ .++|.+.++..
T Consensus 122 V~qVHnRp~Ylr~lveSlrk~kGI~~tLlifSHD~~~~eiN~~I~~i 168 (455)
T KOG2791|consen 122 VLQVHNRPQYLRVLVESLRKVKGISETLLIFSHDGYFEEINRIIESI 168 (455)
T ss_pred EEEEcCcHHHHHHHHHHHHhccCccceEEEEeccchHHHHHHHHhhc
Confidence 45568888 678889999999 799999999887 46677777653
No 191
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=54.40 E-value=36 Score=28.31 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHcCC-CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCc--CCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 31 KPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEP--LGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i-~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~--~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
-+-++.+++....-.+ -+|.+|++...+ ..... .+.++++........ ......+...+...+. .++|
T Consensus 95 g~nl~~l~~~~~~g~l~~~i~~visn~~~-~~~~A----~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~----Dliv 165 (280)
T TIGR00655 95 DHCLGDLLWRWYSGELDAEIALVISNHED-LRSLV----ERFGIPFHYIPATKDNRVEHEKRQLELLKQYQV----DLVV 165 (280)
T ss_pred ChhHHHHHHHHHcCCCCcEEEEEEEcChh-HHHHH----HHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCC----CEEE
Confidence 3455666776655432 356555544332 22223 333777765442211 0112234444555555 3888
Q ss_pred EeCCe-ecc
Q 046608 108 LNSDV-ISE 115 (256)
Q Consensus 108 ~~~D~-~~~ 115 (256)
+.|-+ +++
T Consensus 166 lagym~il~ 174 (280)
T TIGR00655 166 LAKYMQILS 174 (280)
T ss_pred EeCchhhCC
Confidence 88888 555
No 192
>PLN02828 formyltetrahydrofolate deformylase
Probab=54.12 E-value=50 Score=27.28 Aligned_cols=74 Identities=12% Similarity=0.146 Sum_probs=34.6
Q ss_pred chHHHHHHHHHHcCC-CEEEEE-ccCC---hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 32 PMILHQIEALKAVGV-TEVVLA-INYQ---PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 32 pli~~~l~~l~~~~i-~~i~vv-~~~~---~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
.-++.+++..+.-.+ -+|..| +++. ...+.+..++ +++++...+..........+... +..- .++
T Consensus 82 ~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~----~gIP~~~~~~~~~~~~e~~~~~~---l~~~---Dli 151 (268)
T PLN02828 82 HCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLER----HGIPYHYLPTTKENKREDEILEL---VKGT---DFL 151 (268)
T ss_pred hhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHH----cCCCEEEeCCCCCCCHHHHHHHH---HhcC---CEE
Confidence 455666666655432 345444 4442 1234444433 37777644332211112233332 3222 488
Q ss_pred EEeCCe-ecc
Q 046608 107 VLNSDV-ISE 115 (256)
Q Consensus 107 v~~~D~-~~~ 115 (256)
|+.|-+ +.+
T Consensus 152 VLAgym~IL~ 161 (268)
T PLN02828 152 VLARYMQILS 161 (268)
T ss_pred EEeeehHhCC
Confidence 888887 555
No 193
>PRK13844 recombination protein RecR; Provisional
Probab=52.91 E-value=1e+02 Score=24.24 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCC
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g 85 (256)
-|+.+++++.+.++++|++.+++. .+....++.+.-+. ++++......-+.|
T Consensus 126 ~i~~L~~Ri~~~~v~EVIlAt~~t~EGe~Ta~yi~~~lk~-~vkvtRlA~GiP~G 179 (200)
T PRK13844 126 KLDILQQIIADRKIDEVILAISPTVEGETTAHFISQMIAK-DIKISRIGFGVPFG 179 (200)
T ss_pred CHHHHHHHHhcCCCcEEEEeCCCCccHHHHHHHHHHHhcC-CCcEEeeeecCcCC
Confidence 567777888776799999999877 45666777665444 67776544443444
No 194
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=50.33 E-value=62 Score=27.65 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=29.1
Q ss_pred cceeCCcc---hHHHHHHHHHHc-CCCEEEEEccCChHHHHHHHHhh
Q 046608 25 LVDFANKP---MILHQIEALKAV-GVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 25 ll~i~g~p---li~~~l~~l~~~-~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
++-++.+| ++..+++.+.+. +++..+++|+.....+.+.++.+
T Consensus 4 ~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~ 50 (365)
T TIGR00236 4 SIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLF 50 (365)
T ss_pred EEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhc
Confidence 34445554 677888888876 57888888887765555555443
No 195
>PRK00076 recR recombination protein RecR; Reviewed
Probab=49.74 E-value=1.2e+02 Score=23.79 Aligned_cols=52 Identities=31% Similarity=0.369 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCC
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g 85 (256)
-+..+++++ .-++++|++.+++. .+....|+.+.-+..++++.-..+.-+.|
T Consensus 122 ~i~~L~~ri-~~~v~EVIlA~~pt~EGe~Ta~yi~~~lk~~~ikvtRiA~GiP~G 175 (196)
T PRK00076 122 NIDELLERL-DGEVKEVILATNPTVEGEATAHYIARLLKPLGVKVTRLAHGVPVG 175 (196)
T ss_pred CHHHHHHHH-hCCCCEEEEeCCCCchHHHHHHHHHHHHHHcCCCeeeeeeCCCCC
Confidence 345566666 55699999999887 45566666655444466666554444444
No 196
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=49.33 E-value=1.5e+02 Score=25.71 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=49.9
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCC
Q 046608 29 ANKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i~~i~vv~~~~~------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~ 102 (256)
-|.-.+..+-+.+...|.+++.|+++... +.+.+.++. .++.+.....-++.-+.+.+..+.+.+...+.
T Consensus 12 fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~----~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~ 87 (379)
T TIGR02638 12 FGAGAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDE----AGIAYELFDEVKPNPTITVVKAGVAAFKASGA 87 (379)
T ss_pred ECcCHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHH----CCCeEEEECCCCCCcCHHHHHHHHHHHHhcCC
Confidence 34557888888888888899999997653 233333432 25555544344444556777777777655443
Q ss_pred CcEEEEeCCeecc
Q 046608 103 EPFFVLNSDVISE 115 (256)
Q Consensus 103 ~~~lv~~~D~~~~ 115 (256)
|.++-+.|=.+.+
T Consensus 88 D~IiaiGGGSviD 100 (379)
T TIGR02638 88 DYLIAIGGGSPID 100 (379)
T ss_pred CEEEEeCChHHHH
Confidence 2444455544443
No 197
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=47.27 E-value=1.6e+02 Score=24.13 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~ 112 (256)
-++...+.+.++ ++|++........+.+++...-.+.|..+... +..+........++.+ .++++-+-.
T Consensus 117 ~l~~~~~~i~~a--~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~------~d~~~~~~~~~~~~~~---Dv~I~iS~s 185 (278)
T PRK11557 117 KLHECVTMLRSA--RRIILTGIGASGLVAQNFAWKLMKIGINAVAE------RDMHALLATVQALSPD---DLLLAISYS 185 (278)
T ss_pred HHHHHHHHHhcC--CeEEEEecChhHHHHHHHHHHHhhCCCeEEEc------CChHHHHHHHHhCCCC---CEEEEEcCC
Confidence 344445555555 57777665555566666654333445555432 2234445555566555 466665555
Q ss_pred ecccchHHHHHHHHhcCCceEEEEE
Q 046608 113 ISEYPLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~i~~~ 137 (256)
-...++.++++..+++++..+.++.
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~ 210 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITG 210 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcC
Confidence 4455577777877888776555443
No 198
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.93 E-value=2.1e+02 Score=25.36 Aligned_cols=155 Identities=14% Similarity=0.212 Sum_probs=77.9
Q ss_pred ceeCC--cchHHHHHHHHH-HcC---CCEEEEEccCC-hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhc
Q 046608 26 VDFAN--KPMILHQIEALK-AVG---VTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (256)
Q Consensus 26 l~i~g--~pli~~~l~~l~-~~~---i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~ 98 (256)
+.+.| ++.|-+.+..+. +.. +.+|++|-... ..+.-..+.++. ++++. ...+..|...|=..+++..+
T Consensus 130 ITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped~~~L~ri~---kvr~L--RN~~ReGLirSRvrGAdvA~ 204 (559)
T KOG3738|consen 130 ITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLKRIP---KVRVL--RNNEREGLIRSRVRGADVAQ 204 (559)
T ss_pred EEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChHHHHHHhhhh---eeeee--cccchhhhhhhhcccccccc
Confidence 34444 344555554444 332 67888887544 334444555442 34554 33444455555455555554
Q ss_pred CCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCC--C--eEeEEe------------
Q 046608 99 DDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETM--G--KVEKFV------------ 161 (256)
Q Consensus 99 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~--~--~v~~~~------------ 161 (256)
.. .+..+.+-.=.++. +..+++...+...-++.-...+.+..++.++.-.++. | .=..|.
T Consensus 205 a~---vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLhF~We~~~~eqr~sr 281 (559)
T KOG3738|consen 205 AT---VLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWSLHFKWEQMQLEQRESR 281 (559)
T ss_pred ce---EEEEEecceeecchhhHHHHHHHhhcccceeecccccccccccccccchhhhcCCcceEEEEEehhcCHHHHhhc
Confidence 42 23333333333444 7778877665544333322233445566666544422 1 001111
Q ss_pred ecCCCC-CCCeEEEEEEEeCHhhHHhcc
Q 046608 162 EKPKNF-VGNKINAGIYLLNPSVLDRIE 188 (256)
Q Consensus 162 ek~~~~-~~~~~~~Giy~~~~~~~~~l~ 188 (256)
-.|..+ .+..+-.|+|+++++.|.+|.
T Consensus 282 ~~Pt~PirtP~iAGGlfvidk~wF~~LG 309 (559)
T KOG3738|consen 282 ADPTAPIRTPAIAGGLFVIDKEWFNELG 309 (559)
T ss_pred cCCCCcccCccccceeEEecHHHHHHhc
Confidence 112222 244667899999999999885
No 199
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=45.77 E-value=1.5e+02 Score=23.47 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=31.2
Q ss_pred eccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec-ccc-hHHHHHHHHhcCCceEE
Q 046608 78 SQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS-EYP-LKQMIEFHRGHGGEASI 134 (256)
Q Consensus 78 ~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~-~~~-~~~~~~~~~~~~~~~~i 134 (256)
....+..+.+.++-.|++....+ .++.++-|..+ +.+ +..+++.+.+...-..+
T Consensus 34 ~~~~~~~s~~~~yN~a~~~a~~~---ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~i 89 (217)
T PF13712_consen 34 DNVRNAKSMAAAYNEAMEKAKAK---YLVFLHQDVFIINENWLEDILEIFEEDPNIGMI 89 (217)
T ss_dssp E-SSS-S-TTTHHHHHGGG--SS---EEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEE
T ss_pred eccCCCcCHHHHHHHHHHhCCCC---EEEEEeCCeEEcchhHHHHHHHHHhhCCCccEE
Confidence 33344566667777787776655 88999999954 555 67777777554443333
No 200
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=44.37 E-value=69 Score=27.93 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=45.3
Q ss_pred CccceeCCcc---hHHHHHHHHHHcC-CCEEEEEccCCh--HHHHHHHHhhhhccCcE---EEeeccCCcCCCc----HH
Q 046608 23 KPLVDFANKP---MILHQIEALKAVG-VTEVVLAINYQP--EVMLNFLKEFEKKLEIK---ITCSQETEPLGTA----GP 89 (256)
Q Consensus 23 K~ll~i~g~p---li~~~l~~l~~~~-i~~i~vv~~~~~--~~i~~~~~~~~~~~~~~---v~~~~~~~~~g~~----~s 89 (256)
|-+.-+|=|| -+.-++..+.+.+ ++.++++||... +-...++..+ +++ ..+.....+.+.+ ..
T Consensus 5 Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~----~i~~pdy~L~i~~~~~tl~~~t~~~ 80 (383)
T COG0381 5 KVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELF----GIRKPDYDLNIMKPGQTLGEITGNI 80 (383)
T ss_pred EEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHh----CCCCCCcchhccccCCCHHHHHHHH
Confidence 3344445554 3456778888886 999999998775 3333344433 222 1111111111222 22
Q ss_pred HHHHHhhhcCCCCCcEEEEeCCeecc
Q 046608 90 LALARDKLIDDSGEPFFVLNSDVISE 115 (256)
Q Consensus 90 ~~~~~~~i~~~~~~~~lv~~~D~~~~ 115 (256)
+...-+.+....+ ..+++.||+-..
T Consensus 81 i~~~~~vl~~~kP-D~VlVhGDT~t~ 105 (383)
T COG0381 81 IEGLSKVLEEEKP-DLVLVHGDTNTT 105 (383)
T ss_pred HHHHHHHHHhhCC-CEEEEeCCcchH
Confidence 2222233333333 599999999654
No 201
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=43.91 E-value=79 Score=25.37 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHcCCCEEEEEccCCh--HHHHHHHHhhhhc-cCcEEEee
Q 046608 32 PMILHQIEALKAVGVTEVVLAINYQP--EVMLNFLKEFEKK-LEIKITCS 78 (256)
Q Consensus 32 pli~~~l~~l~~~~i~~i~vv~~~~~--~~i~~~~~~~~~~-~~~~v~~~ 78 (256)
.++.-+++.+.+.|+++++++.++.. ..+...+++...+ .++.+...
T Consensus 86 ~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~ 135 (237)
T PF02633_consen 86 ALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVI 135 (237)
T ss_dssp HHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 36777788889899999999998874 2345555555444 46666543
No 202
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=43.05 E-value=1.5e+02 Score=22.74 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.7
Q ss_pred CeEEEEEEEeCHhhHHhcc
Q 046608 170 NKINAGIYLLNPSVLDRIE 188 (256)
Q Consensus 170 ~~~~~Giy~~~~~~~~~l~ 188 (256)
.+..++.|+++.+++..|-
T Consensus 146 ~y~~G~~yvls~~~v~~i~ 164 (195)
T PF01762_consen 146 PYCSGGGYVLSSDVVKRIY 164 (195)
T ss_pred CcCCCCeEEecHHHHHHHH
Confidence 4667889999999988774
No 203
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=42.31 E-value=1.2e+02 Score=23.83 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCC
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLG 85 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g 85 (256)
=|..+++++..-.+++|++.+++. .+....|+.+.-+.+++++.-..+.-+.|
T Consensus 123 ~i~~L~~Rl~~~~~~EvIlAtnpTvEGeaTA~YI~~~l~~~~ikvtRlA~GiPvG 177 (198)
T COG0353 123 NIDELLQRLAEGSIKEVILATNPTVEGEATALYIARLLKPLGLKVTRLAQGVPVG 177 (198)
T ss_pred cHHHHHHHHhcCCCceEEEecCCCccchHHHHHHHHHHhhcCCeEEEEeecCccC
Confidence 466677777777677999999876 45666666665555577776554443333
No 204
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=40.49 E-value=2.3e+02 Score=24.10 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=60.5
Q ss_pred eCCcchHHHHHHHHHHc--CCCEEEEEccCCh---HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCC
Q 046608 28 FANKPMILHQIEALKAV--GVTEVVLAINYQP---EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (256)
Q Consensus 28 i~g~pli~~~l~~l~~~--~i~~i~vv~~~~~---~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~ 102 (256)
+.+..-+...++.++.. +..+|-++.++.. ....+.++.+.+..|++++-..-... .-+-.++..+....
T Consensus 139 vsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~----ndi~~a~~~l~g~~- 213 (322)
T COG2984 139 VSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSV----NDIPRAVQALLGKV- 213 (322)
T ss_pred cCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcc----cccHHHHHHhcCCC-
Confidence 35566788888877666 4788878887665 45556666666677888864432222 22334444443332
Q ss_pred CcEEEEeCCeecccchHHHHHHHHhcC
Q 046608 103 EPFFVLNSDVISEYPLKQMIEFHRGHG 129 (256)
Q Consensus 103 ~~~lv~~~D~~~~~~~~~~~~~~~~~~ 129 (256)
.++..+.|......+..+++.....+
T Consensus 214 -d~i~~p~dn~i~s~~~~l~~~a~~~k 239 (322)
T COG2984 214 -DVIYIPTDNLIVSAIESLLQVANKAK 239 (322)
T ss_pred -cEEEEecchHHHHHHHHHHHHHHHhC
Confidence 58999999976656777776655444
No 205
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=38.51 E-value=2e+02 Score=22.83 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=58.8
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCCh---------------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHH
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQP---------------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALAR 94 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~---------------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~ 94 (256)
+.-.++..++.+..+|++.+.+...-.. +.+.+.+. +.+..+..+.+.......-+..-+....
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~-~ak~~g~~v~~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVK-YAKELGYEVAFGCEDASRTDPEELLELA 143 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHH-HHHHTTSEEEEEETTTGGSSHHHHHHHH
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHH-HHHhcCCceEeCccccccccHHHHHHHH
Confidence 4446777777788889888887775543 12222232 2334477777766554444445454444
Q ss_pred hhhcCCCCCcEEEEeCCe---ecccchHHHHHHHHhcCCceEEEEEe
Q 046608 95 DKLIDDSGEPFFVLNSDV---ISEYPLKQMIEFHRGHGGEASIMVTK 138 (256)
Q Consensus 95 ~~i~~~~~~~~lv~~~D~---~~~~~~~~~~~~~~~~~~~~~i~~~~ 138 (256)
+.+...+ .-.+..+|+ ..+..+.+++...++.-.+..+..+.
T Consensus 144 ~~~~~~g--~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~ 188 (237)
T PF00682_consen 144 EALAEAG--ADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHA 188 (237)
T ss_dssp HHHHHHT---SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHcC--CeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEe
Confidence 4443322 223456666 34555788888776654444444443
No 206
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=38.39 E-value=42 Score=24.56 Aligned_cols=60 Identities=10% Similarity=0.173 Sum_probs=38.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhh
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
.||+++|...+-+. ...-+--.|.+++..+.+.+.+.+++-+++++....+.+...+.+.
T Consensus 72 ivvitag~~~~~g~-----sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~~~~ 131 (141)
T PF00056_consen 72 IVVITAGVPRKPGM-----SRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVAQKY 131 (141)
T ss_dssp EEEETTSTSSSTTS-----SHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHHHHH
T ss_pred EEEEeccccccccc-----cHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHHHHh
Confidence 57888886533211 1111112677899999999999988877777766666666666553
No 207
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=38.21 E-value=61 Score=22.23 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=22.5
Q ss_pred ceeCCcchHHHHHHHHHHcCCCEEEEEcc
Q 046608 26 VDFANKPMILHQIEALKAVGVTEVVLAIN 54 (256)
Q Consensus 26 l~i~g~pli~~~l~~l~~~~i~~i~vv~~ 54 (256)
-.++|+|+.+++++.+++.|+.-..+.-+
T Consensus 14 ~~~~g~~l~~~ll~~~~~~gi~GaTV~rg 42 (101)
T PF02641_consen 14 DRWGGKPLYEWLLERAREAGIAGATVFRG 42 (101)
T ss_dssp -EETTEEHHHHHHHHHHHTT-SEEEEEE-
T ss_pred cccCceEHHHHHHHHHHHCCCCeEEEEcc
Confidence 34789999999999999999887766543
No 208
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=37.87 E-value=1.4e+02 Score=24.85 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=36.9
Q ss_pred CcchHHHHHHHHHHcCC-CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC-cCC-CcHHHHHHHhhhcCCCCCcEE
Q 046608 30 NKPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE-PLG-TAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i-~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~-~~g-~~~s~~~~~~~i~~~~~~~~l 106 (256)
+-+-++.+++....-.+ -+|.+|.+... ...... .+.++++....... ... ....+...+...+.+ ++
T Consensus 99 ~g~nl~al~~~~~~~~~~~~i~~visn~~-~~~~lA----~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~D----li 169 (286)
T PRK13011 99 FDHCLNDLLYRWRIGELPMDIVGVVSNHP-DLEPLA----AWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAE----LV 169 (286)
T ss_pred CcccHHHHHHHHHcCCCCcEEEEEEECCc-cHHHHH----HHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcC----EE
Confidence 33456666766655432 35555544322 222222 33377765433211 111 122344555555554 77
Q ss_pred EEeCCe-ecc
Q 046608 107 VLNSDV-ISE 115 (256)
Q Consensus 107 v~~~D~-~~~ 115 (256)
|+.|-+ +.+
T Consensus 170 vlagy~~il~ 179 (286)
T PRK13011 170 VLARYMQVLS 179 (286)
T ss_pred EEeChhhhCC
Confidence 777776 555
No 209
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=37.47 E-value=1.4e+02 Score=22.59 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=49.6
Q ss_pred cHHHHHHHhh-hcCCCCCcEEEEeCCeecccc-hHHHHHHHHhcCCceEEEEE-ecCCC-cCc-eeEE---EcCCCCeEe
Q 046608 87 AGPLALARDK-LIDDSGEPFFVLNSDVISEYP-LKQMIEFHRGHGGEASIMVT-KVDEP-SKY-GVVV---MEETMGKVE 158 (256)
Q Consensus 87 ~~s~~~~~~~-i~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~i~~~-~~~~~-~~~-~~v~---~~~~~~~v~ 158 (256)
...+..+.+. .+.+ .++++++|+..+.+ +.+++..+.+.+.. +++. +...+ ..+ +.+. .+-- ..+.
T Consensus 19 v~nL~~~~~~~a~~d---~~~~~DsDi~v~p~~L~~lv~~l~~p~vg--lVt~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 92 (175)
T PF13506_consen 19 VNNLAQGLEAGAKYD---YLVISDSDIRVPPDYLRELVAPLADPGVG--LVTGLPRGVPARGFWSRLEAAFFNFL-PGVL 92 (175)
T ss_pred HHHHHHHHHhhCCCC---EEEEECCCeeECHHHHHHHHHHHhCCCCc--EEEecccccCCcCHHHHHHHHHHhHH-HHHH
Confidence 4567777776 5444 89999999977766 77888777664332 2222 11111 111 0000 0000 0000
Q ss_pred EEeecCCCCCCCeEEEEEEEeCHhhHHhcc
Q 046608 159 KFVEKPKNFVGNKINAGIYLLNPSVLDRIE 188 (256)
Q Consensus 159 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~ 188 (256)
.. .......+.+.+.++++.|+.+.
T Consensus 93 ~a-----~~~~~~~~G~~m~~rr~~L~~~G 117 (175)
T PF13506_consen 93 QA-----LGGAPFAWGGSMAFRREALEEIG 117 (175)
T ss_pred HH-----hcCCCceecceeeeEHHHHHHcc
Confidence 00 11234778899999999998763
No 210
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=37.20 E-value=72 Score=23.60 Aligned_cols=49 Identities=14% Similarity=0.323 Sum_probs=24.5
Q ss_pred CCcchH---HHHHHHHHHcCCCEEEEEccCC-hHHHHHHHHhhhhccCcEEEee
Q 046608 29 ANKPMI---LHQIEALKAVGVTEVVLAINYQ-PEVMLNFLKEFEKKLEIKITCS 78 (256)
Q Consensus 29 ~g~pli---~~~l~~l~~~~i~~i~vv~~~~-~~~i~~~~~~~~~~~~~~v~~~ 78 (256)
.|.|++ +.+.+.+.+.++++|++..... .+.+.+.+.. .++.++++.++
T Consensus 122 ~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~-~~~~~v~v~~v 174 (175)
T PF13727_consen 122 DGVPVLGDLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEE-LENHGVRVRVV 174 (175)
T ss_dssp TTEEEE--GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHH-HHTTT-EEEE-
T ss_pred cCceeEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHH-HHhCCCEEEEe
Confidence 455544 4566677777788888887654 3444444443 34446666543
No 211
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=36.85 E-value=2.3e+02 Score=23.07 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--
Q 046608 36 HQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-- 112 (256)
Q Consensus 36 ~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-- 112 (256)
.-++.+..+|++.+-+.+.-+. +.+.+.++. .+..|..+.+.......-+..-+....+.+...+ .-.+..+|+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~-ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l~DT~G 165 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEADVSEQHIGA-ARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG--ADCVYVTDSAG 165 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhHHHHHHHHHH-HHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC--CCEEEEcCCCC
Confidence 3356777778888777765432 334444443 2333666655443322223344444444444333 234566888
Q ss_pred -ecccchHHHHHHHHhcC
Q 046608 113 -ISEYPLKQMIEFHRGHG 129 (256)
Q Consensus 113 -~~~~~~~~~~~~~~~~~ 129 (256)
.++..+.++++..++.-
T Consensus 166 ~~~P~~v~~lv~~l~~~~ 183 (263)
T cd07943 166 AMLPDDVRERVRALREAL 183 (263)
T ss_pred CcCHHHHHHHHHHHHHhC
Confidence 45666888888766543
No 212
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=36.67 E-value=2.3e+02 Score=22.94 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCc-------CCCcHHHHHHHhhhcCCCCCcE
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEP-------LGTAGPLALARDKLIDDSGEPF 105 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~-------~g~~~s~~~~~~~i~~~~~~~~ 105 (256)
-..-+++.|+..|+++|.+++-|.. .+.+.+.++....|+++.-...... .=+.+++..+...+...+. .-
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~-~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~a-DA 184 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTP-ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDA-DA 184 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcH-HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCC-CE
Confidence 4567788889999999999998764 4444444444444777754321111 1123566655555533222 35
Q ss_pred EEEeCCeecccc
Q 046608 106 FVLNSDVISEYP 117 (256)
Q Consensus 106 lv~~~D~~~~~~ 117 (256)
+++.|-.+-..+
T Consensus 185 ifisCTnLrt~~ 196 (239)
T TIGR02990 185 LFLSCTALRAAT 196 (239)
T ss_pred EEEeCCCchhHH
Confidence 555577765544
No 213
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=36.07 E-value=1.2e+02 Score=19.58 Aligned_cols=36 Identities=8% Similarity=0.195 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHcCCCEEEEEccCC----hHHHHHHHHhh
Q 046608 32 PMILHQIEALKAVGVTEVVLAINYQ----PEVMLNFLKEF 67 (256)
Q Consensus 32 pli~~~l~~l~~~~i~~i~vv~~~~----~~~i~~~~~~~ 67 (256)
..+...|+.+...+...+.|++|.. .-.+.+.+.++
T Consensus 13 ~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~ 52 (83)
T PF01713_consen 13 RALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRW 52 (83)
T ss_dssp HHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHH
Confidence 4677888888888889999999877 33344444443
No 214
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=35.97 E-value=2.5e+02 Score=23.17 Aligned_cols=93 Identities=6% Similarity=0.015 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~ 112 (256)
-++.+++.+.++ .+|++..-.....+..++...-.+.|..+.... ..+........++.+ .++++-+..
T Consensus 129 ~l~~~~~~i~~A--~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~------d~~~~~~~~~~~~~~---Dl~I~iS~s 197 (292)
T PRK11337 129 EFHRAARFFYQA--RQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYD------DAHIMLMSAALLQEG---DVVLVVSHS 197 (292)
T ss_pred HHHHHHHHHHcC--CeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcC------CHHHHHHHHhcCCCC---CEEEEEeCC
Confidence 344455555555 566655533444555555433333455554321 122233333445444 466666555
Q ss_pred ecccchHHHHHHHHhcCCceEEEE
Q 046608 113 ISEYPLKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~i~~ 136 (256)
-...++.++++..++.+...+.++
T Consensus 198 G~t~~~~~~~~~ak~~g~~ii~IT 221 (292)
T PRK11337 198 GRTSDVIEAVELAKKNGAKIICIT 221 (292)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEe
Confidence 444557788888888876554444
No 215
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=35.51 E-value=2e+02 Score=21.87 Aligned_cols=84 Identities=6% Similarity=0.080 Sum_probs=42.9
Q ss_pred EEEEEccCC--hHHHHHHHHhhhhc--cCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccc-hHHHH
Q 046608 48 EVVLAINYQ--PEVMLNFLKEFEKK--LEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYP-LKQMI 122 (256)
Q Consensus 48 ~i~vv~~~~--~~~i~~~~~~~~~~--~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~-~~~~~ 122 (256)
++++++... ...+.+.......+ .++++......+-....+++..+...+...+ +++ +-++|.++ ++.+.
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia~AD---ii~--~smlF~ed~v~~l~ 76 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIARAD---IIF--GSMLFIEDHVRPLL 76 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHHhCC---EEE--eehhhhHHHHHHHH
Confidence 567777544 23344333333222 1455543332222245667777777776653 443 44666655 45555
Q ss_pred HHHHhc--CCceEEEE
Q 046608 123 EFHRGH--GGEASIMV 136 (256)
Q Consensus 123 ~~~~~~--~~~~~i~~ 136 (256)
...... .+++.+++
T Consensus 77 ~~L~~~r~~~~a~i~~ 92 (164)
T PF11965_consen 77 PALEARRDHCPAMIIF 92 (164)
T ss_pred HHHHHHHccCCEEEEE
Confidence 554433 55665554
No 216
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=34.94 E-value=1.9e+02 Score=24.27 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=39.9
Q ss_pred CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeecc-CCcCCCcHHHHHHHhhhcCC
Q 046608 46 VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQE-TEPLGTAGPLALARDKLIDD 100 (256)
Q Consensus 46 i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~-~~~~g~~~s~~~~~~~i~~~ 100 (256)
+.+|-|++++....+.+++....+++ .+++.+.+- =.+.+...++..|+..+...
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~ 70 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEM 70 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhc
Confidence 67999999999888888877655544 355544332 25667888999999998754
No 217
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=34.83 E-value=2.3e+02 Score=25.34 Aligned_cols=56 Identities=7% Similarity=0.157 Sum_probs=42.6
Q ss_pred CCEEEEEccCChHHHHHHHHhhhhccC-cEEEeecc-CCcCCCcHHHHHHHhhhcCCC
Q 046608 46 VTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQE-TEPLGTAGPLALARDKLIDDS 101 (256)
Q Consensus 46 i~~i~vv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~-~~~~g~~~s~~~~~~~i~~~~ 101 (256)
+..|-|+|++....+.+.+....+++. +++++.+- -.+.+.+..+..+...++..+
T Consensus 135 p~~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~ 192 (440)
T COG1570 135 PKKIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRG 192 (440)
T ss_pred CCeEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccC
Confidence 467899999999999998887777764 66665432 256677889999999887754
No 218
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=34.67 E-value=3.2e+02 Score=23.96 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=51.3
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCC------hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQ------PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~------~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
|.=-++++.+.+...|.+++.||+.+. .+.+.+.+... ++.+....+-.+.=+...+..+.+.++..+.|
T Consensus 13 G~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~----~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D 88 (377)
T COG1454 13 GRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAA----GIEYEVFDEVEPEPTIETVEAGAEVAREFGPD 88 (377)
T ss_pred cCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhc----CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 444677888888888889999999874 23444444432 55544444444444667777777777776554
Q ss_pred cEEEEeCCeec
Q 046608 104 PFFVLNSDVIS 114 (256)
Q Consensus 104 ~~lv~~~D~~~ 114 (256)
.++-+.|=...
T Consensus 89 ~iIalGGGS~~ 99 (377)
T COG1454 89 TIIALGGGSVI 99 (377)
T ss_pred EEEEeCCccHH
Confidence 56666665544
No 219
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=34.63 E-value=2e+02 Score=21.59 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccC
Q 046608 35 LHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQET 81 (256)
Q Consensus 35 ~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~ 81 (256)
+++++.|.+.|++.++-+.|.....+.+.+.+ ..+++++...++
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~---~~~i~~v~~rhE 47 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSINGLMDALRR---EGKIEFIQVRHE 47 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCchHHHHHHHhh---cCCCeEEEeCCH
Confidence 67889999999999999988776655555532 125666654443
No 220
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=34.50 E-value=84 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=15.1
Q ss_pred CcchHHHHHHHHHHcCCCEEEEE
Q 046608 30 NKPMILHQIEALKAVGVTEVVLA 52 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv 52 (256)
+.|-+...++.+...|.++|+|+
T Consensus 44 ~~P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NEPTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE
Confidence 45667777777776666666654
No 221
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=34.02 E-value=2.1e+02 Score=22.76 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=64.6
Q ss_pred Ccccee--CCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 23 KPLVDF--ANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 23 K~ll~i--~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
-++.|+ .|-+|.+-+++.+..+.+-.|-+.-.++.-+...++.+..+.. +-.+++. ++ -.-|+.|+..|.+.+.+
T Consensus 72 i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~-DP-MLATG~s~i~ai~~L~~ 149 (210)
T COG0035 72 IVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVL-DP-MLATGGSAIAAIDLLKK 149 (210)
T ss_pred EEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEE-Cc-hhhccHhHHHHHHHHHH
Confidence 355777 7899999999999988666666665555444555665544322 2233332 22 34567778888887766
Q ss_pred C-CCCcEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCC
Q 046608 100 D-SGEPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDE 141 (256)
Q Consensus 100 ~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 141 (256)
. +.+. +.+-+=.-.++.++++.+ ...++.+++...+.
T Consensus 150 ~G~~~~-I~~v~~vAapeGi~~v~~----~~p~v~I~ta~iD~ 187 (210)
T COG0035 150 RGGPKN-IKVVSLVAAPEGIKAVEK----AHPDVEIYTAAIDE 187 (210)
T ss_pred hCCCce-EEEEEEEecHHHHHHHHH----hCCCCeEEEEEecc
Confidence 5 3222 222222223444566655 34467777766543
No 222
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=33.84 E-value=1.9e+02 Score=23.67 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCChH-HHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCC
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQPE-VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSD 111 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~~~-~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D 111 (256)
.+.++-+-+.+.++.++.+|++++.. ...+.+.+.-+..++++..........+.+.+....+.+...+.+.++-+.|=
T Consensus 6 a~~~l~~~l~~~~~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG 85 (250)
T PF13685_consen 6 ALDKLPEILSELGLKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGG 85 (250)
T ss_dssp -GGGHHHHHGGGT-SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESH
T ss_pred HHHHHHHHHHhcCCCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCc
Confidence 45556666777678999999988843 33334433323336666544322233466777777777753322123333333
Q ss_pred eecccchHHHHHHHHhcCCceEEEEEecCC--CcCceeEEEcCCCCeEeEE
Q 046608 112 VISEYPLKQMIEFHRGHGGEASIMVTKVDE--PSKYGVVVMEETMGKVEKF 160 (256)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~v~~~~~~~~v~~~ 160 (256)
.+. |+-+.+.+.. ......+-+....| .+....+..+ + |.-..+
T Consensus 86 ~i~--D~~K~~A~~~-~~p~isVPTa~S~DG~aS~~Asl~~~-~-g~k~s~ 131 (250)
T PF13685_consen 86 TII--DIAKYAAFEL-GIPFISVPTAASHDGFASPVASLTVD-D-GFKVSY 131 (250)
T ss_dssp HHH--HHHHHHHHHH-T--EEEEES--SSGGGTSSEEEEEET---TEEEEE
T ss_pred HHH--HHHHHHHHhc-CCCEEEeccccccccccCCCeeEEec-C-CCceee
Confidence 333 3555555433 32333333333333 2444455555 2 444444
No 223
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.36 E-value=2.2e+02 Score=25.22 Aligned_cols=55 Identities=7% Similarity=0.140 Sum_probs=40.2
Q ss_pred CCEEEEEccCChHHHHHHHHhhhhccC-cEEEeeccC-CcCCCcHHHHHHHhhhcCC
Q 046608 46 VTEVVLAINYQPEVMLNFLKEFEKKLE-IKITCSQET-EPLGTAGPLALARDKLIDD 100 (256)
Q Consensus 46 i~~i~vv~~~~~~~i~~~~~~~~~~~~-~~v~~~~~~-~~~g~~~s~~~~~~~i~~~ 100 (256)
+.+|-|||++....+.+.+....+++. +++.+.+-. .+.+...++..|+..+...
T Consensus 135 p~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~ 191 (438)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANAR 191 (438)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCC
Confidence 467999999999888888887666553 455543322 4667788999999888763
No 224
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=32.77 E-value=60 Score=24.28 Aligned_cols=26 Identities=8% Similarity=0.287 Sum_probs=23.4
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINY 55 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~ 55 (256)
|..|+.+++..++..|++++++.+.+
T Consensus 83 G~~Ll~~~~~~Ar~~gi~~lf~LTt~ 108 (153)
T COG1246 83 GERLLERLLADARELGIKELFVLTTR 108 (153)
T ss_pred HHHHHHHHHHHHHHcCCceeeeeecc
Confidence 56899999999999999999999853
No 225
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=32.69 E-value=74 Score=21.31 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=23.1
Q ss_pred ceeCCcchHHHHHHHHHHc--CCCEEEEEcc
Q 046608 26 VDFANKPMILHQIEALKAV--GVTEVVLAIN 54 (256)
Q Consensus 26 l~i~g~pli~~~l~~l~~~--~i~~i~vv~~ 54 (256)
+-+|++|+..|++..+... |.+++.+-..
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKar 34 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKAR 34 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 4579999999999988764 6788888663
No 226
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.40 E-value=1.6e+02 Score=19.79 Aligned_cols=75 Identities=11% Similarity=0.093 Sum_probs=37.9
Q ss_pred EEEEcc--CChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHH
Q 046608 49 VVLAIN--YQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHR 126 (256)
Q Consensus 49 i~vv~~--~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~ 126 (256)
|.||.+ .....+.+.++++ |.++.+. ....|....-......+... .++|+.-|.+.......+-+..+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~----G~~~~~h--g~~~~~~~~~~~l~~~i~~a---D~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKY----GGKLIHH--GRDGGDEKKASRLPSKIKKA---DLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHc----CCEEEEE--ecCCCCccchhHHHHhcCCC---CEEEEEeCCcChHHHHHHHHHHH
Confidence 556666 3355666666654 5555543 21222222222333445444 37777777776654555555555
Q ss_pred hcCCce
Q 046608 127 GHGGEA 132 (256)
Q Consensus 127 ~~~~~~ 132 (256)
+.+...
T Consensus 73 k~~ip~ 78 (97)
T PF10087_consen 73 KYGIPI 78 (97)
T ss_pred HcCCcE
Confidence 555433
No 227
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=32.14 E-value=3.4e+02 Score=23.51 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=47.6
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCChHH--HHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEE
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQPEV--MLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFV 107 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~~~--i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv 107 (256)
|.-.++++-+.+...|..++.|+++..... ..+.+...-...++.+.....-++.-+...+..+.+.+...+.|.++-
T Consensus 10 G~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 89 (374)
T cd08189 10 GSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILA 89 (374)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 445677777888888888999998764321 112222211222555544333344456677777777776544323444
Q ss_pred EeCCeecc
Q 046608 108 LNSDVISE 115 (256)
Q Consensus 108 ~~~D~~~~ 115 (256)
+.|=.+.+
T Consensus 90 iGGGS~~D 97 (374)
T cd08189 90 VGGGSVID 97 (374)
T ss_pred eCCccHHH
Confidence 55545443
No 228
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=31.52 E-value=3.7e+02 Score=23.74 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=46.7
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
|.-.++.+-+.+.+.|.++++|+++... +.+.+.+++ .++.+.....-++.-+.+.+..+.+.+...+.|
T Consensus 7 G~g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~----~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D 82 (414)
T cd08190 7 GPGVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEA----AGINFEVYDDVRVEPTDESFKDAIAFAKKGQFD 82 (414)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHH----cCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCC
Confidence 4445777777788878789999987652 333344432 245554333333334566777777776654443
Q ss_pred cEEEEeCCeec
Q 046608 104 PFFVLNSDVIS 114 (256)
Q Consensus 104 ~~lv~~~D~~~ 114 (256)
-++-+.|=.+.
T Consensus 83 ~IIaiGGGSvi 93 (414)
T cd08190 83 AFVAVGGGSVI 93 (414)
T ss_pred EEEEeCCccHH
Confidence 45555555544
No 229
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=31.51 E-value=3.5e+02 Score=23.47 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=46.3
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCChH------HHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQPE------VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~~------~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
|+-.+..+-+.+...|..++.|+++.... .+.+.++. .++.+.....-++.-+...+..+.+.++..+.|
T Consensus 12 G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~----~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D 87 (377)
T cd08176 12 GAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDE----AGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCD 87 (377)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHH----cCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 44567788888888788899999876532 23344432 255554333333334556677777666554332
Q ss_pred cEEEEeCCeec
Q 046608 104 PFFVLNSDVIS 114 (256)
Q Consensus 104 ~~lv~~~D~~~ 114 (256)
-++=+.|=.+.
T Consensus 88 ~IIavGGGS~i 98 (377)
T cd08176 88 FIISIGGGSPH 98 (377)
T ss_pred EEEEeCCcHHH
Confidence 34445554443
No 230
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=31.40 E-value=1e+02 Score=25.21 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHcC--CCEEEEEccCC---hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHH
Q 046608 31 KPMILHQIEALKAVG--VTEVVLAINYQ---PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLA 91 (256)
Q Consensus 31 ~pli~~~l~~l~~~~--i~~i~vv~~~~---~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~ 91 (256)
.|++..++..|...| +..++++..-. .++|.+.+.. ++.++.+.+..+.++.+|+-
T Consensus 130 ~~~l~al~~~L~~~g~~iap~v~~~qgRValgD~Ige~L~a-----r~vvvLIGERPGLs~~dSlg 190 (260)
T PRK05465 130 EPLLPALLAGLKAAGWSVGPPVFVRQGRVALGDEIGELLGA-----KVVVVLIGERPGLSSPDSLG 190 (260)
T ss_pred HHHHHHHHHHHHHcCCCcCCeEEEecCeehHHHHHHHHhCC-----CEEEEEEecCCCCCCcccCe
Confidence 478888888888776 44555554322 3555555542 45566666666666666653
No 231
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=31.20 E-value=3.5e+02 Score=24.64 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=30.6
Q ss_pred CCcccee-CCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHH
Q 046608 22 PKPLVDF-ANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64 (256)
Q Consensus 22 pK~ll~i-~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~ 64 (256)
||...|- ...+.-+++++.|.+.|+++++-+-|.....+.+.+
T Consensus 2 ~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal 45 (530)
T PRK07092 2 PKATAPAAAMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDF 45 (530)
T ss_pred CccccCccccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHH
Confidence 4555555 345667899999999999999988876654444444
No 232
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=30.77 E-value=87 Score=26.22 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=40.2
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhh
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
.||+++|..++-+. ...-+-..+.+++..+.+.+.+.+++-++++.+...+.+...+.++
T Consensus 69 iVIitag~p~~~~~-----~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~ 128 (300)
T cd00300 69 IVVITAGAPRKPGE-----TRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKL 128 (300)
T ss_pred EEEEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHH
Confidence 57788876544211 1222222577899999999999888888888876666666666554
No 233
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=30.75 E-value=3.5e+02 Score=23.29 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=45.7
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCChH---HHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEE
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQPE---VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~~---~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~l 106 (256)
|.-.+.++-+.+...|.++++||++.... .+.+.+++ .++.+.....-++.-+.+.+..+.+.+...+.|.++
T Consensus 7 G~g~l~~l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II 82 (367)
T cd08182 7 GRGAIAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKP----LGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVL 82 (367)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEeCchHHHHHHHHHHHHH----cCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEE
Confidence 34456777777777777899999976543 33344432 245444333333444566777777766654332333
Q ss_pred EEeCCeecc
Q 046608 107 VLNSDVISE 115 (256)
Q Consensus 107 v~~~D~~~~ 115 (256)
-+.|=.+.+
T Consensus 83 avGGGs~~D 91 (367)
T cd08182 83 AVGGGSVLD 91 (367)
T ss_pred EeCCcHHHH
Confidence 344444443
No 234
>PRK04946 hypothetical protein; Provisional
Probab=29.99 E-value=1e+02 Score=23.78 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=36.1
Q ss_pred CCCccceeCCc------chHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhh
Q 046608 21 VPKPLVDFANK------PMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEK 69 (256)
Q Consensus 21 ~pK~ll~i~g~------pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~ 69 (256)
.|..-+.+.|. ..|...|+.+...|+..+.|+.|.....+.+.+..|-.
T Consensus 93 ~~~~~LDLhG~~~eeA~~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~V~~wL~ 147 (181)
T PRK04946 93 SPELFLDLHGLTQLQAKQELGALIAACRKEHVFCACVMHGHGKHILKQQTPLWLA 147 (181)
T ss_pred CCceEEECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHHHHHHHc
Confidence 45566666665 46777778888888999999999887777777766643
No 235
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=29.74 E-value=2e+02 Score=20.08 Aligned_cols=92 Identities=8% Similarity=0.028 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee
Q 046608 34 ILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI 113 (256)
Q Consensus 34 i~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~ 113 (256)
++.+++.+.++ ++|++........+..++...-...+..+..... ..........+..+ .++++-+-.=
T Consensus 3 i~~~~~~i~~~--~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~i~iS~~g 71 (139)
T cd05013 3 LEKAVDLLAKA--RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSD------PHLQLMSAANLTPG---DVVIAISFSG 71 (139)
T ss_pred HHHHHHHHHhC--CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecC------HHHHHHHHHcCCCC---CEEEEEeCCC
Confidence 56777888777 5777766555555655555433333444433311 12222222233333 3444444333
Q ss_pred cccchHHHHHHHHhcCCceEEEE
Q 046608 114 SEYPLKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~i~~ 136 (256)
....+.++++..++++...+.++
T Consensus 72 ~~~~~~~~~~~a~~~g~~iv~iT 94 (139)
T cd05013 72 ETKETVEAAEIAKERGAKVIAIT 94 (139)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEc
Confidence 33456777777777776544444
No 236
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=29.60 E-value=2.6e+02 Score=23.98 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec
Q 046608 35 LHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS 114 (256)
Q Consensus 35 ~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~ 114 (256)
-..+..|.++|++=+-+.+... +-.+.+....+...++++--.+..+ ..|+..+...- +.+=+-+|.+-.
T Consensus 37 v~QI~~L~~aGceiVRvavp~~--~~A~al~~I~~~~~iPlVADIHFd~-------~lAl~a~~~g~-dkiRINPGNig~ 106 (346)
T TIGR00612 37 VAQIRALEEAGCDIVRVTVPDR--ESAAAFEAIKEGTNVPLVADIHFDY-------RLAALAMAKGV-AKVRINPGNIGF 106 (346)
T ss_pred HHHHHHHHHcCCCEEEEcCCCH--HHHHhHHHHHhCCCCCEEEeeCCCc-------HHHHHHHHhcc-CeEEECCCCCCC
Confidence 3567888999988777776322 2233344433334566654333321 22222222210 036667787777
Q ss_pred ccchHHHHHHHHhcCCceEEEEE
Q 046608 115 EYPLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~i~~~ 137 (256)
++.++++++..++++...-|.+.
T Consensus 107 ~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 107 RERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC
Confidence 77799999999988877766653
No 237
>COG3742 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.31 E-value=2.2e+02 Score=20.53 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEE
Q 046608 29 ANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVL 108 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~ 108 (256)
.+.|-..+.++.+...---+++-+++.....-.+...+|++- + ..+...+.++.+..++..+... =|+.
T Consensus 48 r~~p~a~~~vd~~l~~~~~~v~~i~~~~~~~A~~A~~rfGKg---~----~HpA~LN~GDCfsYA~A~~~~~----pLL~ 116 (131)
T COG3742 48 RGGPEARRLVDLLLSEAGAQVVAVTADQARAALRAYRRFGKG---R----GHPAGLNFGDCFSYALAKLSGQ----PLLY 116 (131)
T ss_pred hcCcHHHHHHHHHHHhcCCeEEeecHHHHHHHHHHHHHhCcC---C----CCcccccchhHHHHHHHHhcCC----ceEe
Confidence 455678888887766532356666666555555555555421 1 2345677888998888888875 4556
Q ss_pred eCCeecccchHH
Q 046608 109 NSDVISEYPLKQ 120 (256)
Q Consensus 109 ~~D~~~~~~~~~ 120 (256)
-||.+...|+..
T Consensus 117 KGnDF~~TDi~~ 128 (131)
T COG3742 117 KGNDFSHTDIRA 128 (131)
T ss_pred ecCCccccchHh
Confidence 666666555543
No 238
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=28.77 E-value=2.9e+02 Score=24.64 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=39.0
Q ss_pred CCEEEEEccCChHHHHHHHHhhhhcc-CcEEEeecc-CCcCCCcHHHHHHHhhhcC
Q 046608 46 VTEVVLAINYQPEVMLNFLKEFEKKL-EIKITCSQE-TEPLGTAGPLALARDKLID 99 (256)
Q Consensus 46 i~~i~vv~~~~~~~i~~~~~~~~~~~-~~~v~~~~~-~~~~g~~~s~~~~~~~i~~ 99 (256)
+.+|-|||++....+.+.+....+++ .+++.+.+- =.+.+...++..|+..+..
T Consensus 129 p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~ 184 (432)
T TIGR00237 129 PKRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANT 184 (432)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhc
Confidence 46799999999988888887766554 345554332 2456677889999888875
No 239
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=28.69 E-value=2.2e+02 Score=20.27 Aligned_cols=96 Identities=11% Similarity=0.148 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHcC-CCEEEEEccCCh---HHHHHHHHhhhhccCcEEEeecc-----CCcCCCcHHH-HHHHhhhcCCCC
Q 046608 33 MILHQIEALKAVG-VTEVVLAINYQP---EVMLNFLKEFEKKLEIKITCSQE-----TEPLGTAGPL-ALARDKLIDDSG 102 (256)
Q Consensus 33 li~~~l~~l~~~~-i~~i~vv~~~~~---~~i~~~~~~~~~~~~~~v~~~~~-----~~~~g~~~s~-~~~~~~i~~~~~ 102 (256)
-...+++.+.+.+ +..+.+..+... ..+.+.+.. .++.+...+. ....+.--.+ ..++........
T Consensus 21 ~~~~l~~~i~~~~~~~~~~~y~~~~~~~~~~~~~~L~~----~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~ 96 (146)
T PF01936_consen 21 DFERLLEEIRKYGPLVRIRAYGNWDDPNQKSFQEALQR----AGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPP 96 (146)
T ss_dssp -HHHHHHHHTTTEEEEEEEEEE----HHHHHHHHHHHH----HT-EEEE------S---S---HHHHHHHHHHHG--GG-
T ss_pred CHHHHHHHHHhcCCeEEEEEEeeccccchhhHHHHHHh----CeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCC
Confidence 4455666666654 445555555322 233333433 2565554333 1222222222 233333311111
Q ss_pred CcEEEEeCCeecccchHHHHHHHHhcCCceEEEE
Q 046608 103 EPFFVLNSDVISEYPLKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 103 ~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~ 136 (256)
+.+++++|| .|+..+++..++.+....++.
T Consensus 97 d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp SEEEEE-------GGGHHHHHHHHHH--EEEEEE
T ss_pred CEEEEEECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 379999999 456777777777777666655
No 240
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=28.50 E-value=3.9e+02 Score=23.14 Aligned_cols=82 Identities=7% Similarity=0.132 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
|.-.+.++-+.+...|..++.||++... +.+.+.+.. .++.+.....-.+.-+...+..+.+.+...+.|
T Consensus 12 G~g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~----~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d 87 (377)
T cd08188 12 GRGALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEE----AGLEYVVFSDVSPNPRDEEVMAGAELYLENGCD 87 (377)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHH----cCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 4556788777788878889999987543 233333332 245444333333333556677777666554432
Q ss_pred cEEEEeCCeecc
Q 046608 104 PFFVLNSDVISE 115 (256)
Q Consensus 104 ~~lv~~~D~~~~ 115 (256)
-++-+.|=.+.+
T Consensus 88 ~IIaiGGGsviD 99 (377)
T cd08188 88 VIIAVGGGSPID 99 (377)
T ss_pred EEEEeCCchHHH
Confidence 444455544443
No 241
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.83 E-value=1.1e+02 Score=28.29 Aligned_cols=54 Identities=13% Similarity=0.266 Sum_probs=34.7
Q ss_pred cccCCCCCCCccceeC----CcchHHHHHHH------HHHcC--CCEEEEEccCChHHHHHHHHhhhh
Q 046608 14 LRPLTLSVPKPLVDFA----NKPMILHQIEA------LKAVG--VTEVVLAINYQPEVMLNFLKEFEK 69 (256)
Q Consensus 14 l~~~~~~~pK~ll~i~----g~pli~~~l~~------l~~~~--i~~i~vv~~~~~~~i~~~~~~~~~ 69 (256)
|..++.-.||..+-+| ||+||.+.+-- +..+| +++++|-+ ....|++.|.....
T Consensus 329 ftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGv--GArRVRdLF~aAk~ 394 (752)
T KOG0734|consen 329 FTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGV--GARRVRDLFAAAKA 394 (752)
T ss_pred hhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcc--cHHHHHHHHHHHHh
Confidence 3334447899999996 89999998742 22223 45555444 55678888876433
No 242
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=27.82 E-value=3.4e+02 Score=22.21 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=54.1
Q ss_pred CCCCccccCCCCCCCccceeCCc-----chHHHHHHHHHHcCCCEEEEEccCC---hHHHHHHHHhhhhccCcEEEeecc
Q 046608 9 GFGTRLRPLTLSVPKPLVDFANK-----PMILHQIEALKAVGVTEVVLAINYQ---PEVMLNFLKEFEKKLEIKITCSQE 80 (256)
Q Consensus 9 G~g~Rl~~~~~~~pK~ll~i~g~-----pli~~~l~~l~~~~i~~i~vv~~~~---~~~i~~~~~~~~~~~~~~v~~~~~ 80 (256)
+.+.++.|+....|-.+-.+-|. .|+..+...+...+...+.+-.... ...|...+..+..+ |++++-+..
T Consensus 10 ~~~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-GLRlIev~k 88 (249)
T PF05673_consen 10 GNSGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-GLRLIEVSK 88 (249)
T ss_pred CCCCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-CceEEEECH
Confidence 34555777655555566666553 4555555555555566666655333 23455555555443 777765533
Q ss_pred CCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc
Q 046608 81 TEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE 115 (256)
Q Consensus 81 ~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~ 115 (256)
. .... +...++.+..... .|+++.-|.-|+
T Consensus 89 ~-~L~~---l~~l~~~l~~~~~-kFIlf~DDLsFe 118 (249)
T PF05673_consen 89 E-DLGD---LPELLDLLRDRPY-KFILFCDDLSFE 118 (249)
T ss_pred H-Hhcc---HHHHHHHHhcCCC-CEEEEecCCCCC
Confidence 3 3333 4444444443221 688777777554
No 243
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=27.69 E-value=1.2e+02 Score=20.35 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=25.8
Q ss_pred CCccceeCCcchHHHHHHHHHHc--CCCEEEEEcc
Q 046608 22 PKPLVDFANKPMILHQIEALKAV--GVTEVVLAIN 54 (256)
Q Consensus 22 pK~ll~i~g~pli~~~l~~l~~~--~i~~i~vv~~ 54 (256)
++...-+|.+|...|+|..+... |.+++++-..
T Consensus 3 ~envV~vG~KPvmNYVlAvlt~fn~g~~eViiKAR 37 (91)
T COG1581 3 EENVVLVGKKPVMNYVLAVLTQFNEGADEVIIKAR 37 (91)
T ss_pred CccEEEEcCcchHHHHHHHHHHHHcCCCEEEEEec
Confidence 35667789999999999877655 6888888663
No 244
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=27.67 E-value=2.4e+02 Score=20.31 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=25.9
Q ss_pred EEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe
Q 046608 48 EVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112 (256)
Q Consensus 48 ~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~ 112 (256)
+|.|+.+++ ..+.+.+..+-+..+.+.+.-.+....| ...+....+.....+. .++++++|.
T Consensus 1 kVFIvhg~~-~~~~~~v~~~L~~~~~ep~i~~~~~~~g-~tiie~le~~~~~~~f-aIvl~TpDD 62 (125)
T PF10137_consen 1 KVFIVHGRD-LAAAEAVERFLEKLGLEPIIWHEQPNLG-QTIIEKLEEAADSVDF-AIVLFTPDD 62 (125)
T ss_pred CEEEEeCCC-HHHHHHHHHHHHhCCCceEEeecCCCCC-CchHHHHHHHhccCCE-EEEEEcccc
Confidence 366777744 3444444443333355554333332222 1222233333332221 455555555
No 245
>PRK15482 transcriptional regulator MurR; Provisional
Probab=27.45 E-value=3.5e+02 Score=22.23 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCee
Q 046608 34 ILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVI 113 (256)
Q Consensus 34 i~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~ 113 (256)
++..++.+.++ ++|+++.......+.+++...-.+.|..+...... +........++.+ .++++-+-.-
T Consensus 125 l~~~~~~i~~A--~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~------~~~~~~~~~~~~~---Dv~i~iS~sg 193 (285)
T PRK15482 125 LQKIIEVISKA--PFIQITGLGGSALVGRDLSFKLMKIGYRVACEADT------HVQATVSQALKKG---DVQIAISYSG 193 (285)
T ss_pred HHHHHHHHHhC--CeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccH------hHHHHHHhcCCCC---CEEEEEeCCC
Confidence 44444555555 56776664445555555554333335555432211 1122222344444 3666655555
Q ss_pred cccchHHHHHHHHhcCCceEEEE
Q 046608 114 SEYPLKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~i~~ 136 (256)
...++.++++...+.++..+.++
T Consensus 194 ~t~~~~~~~~~a~~~g~~iI~IT 216 (285)
T PRK15482 194 SKKEIVLCAEAARKQGATVIAIT 216 (285)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEe
Confidence 55567778887777776554444
No 246
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=27.33 E-value=4.1e+02 Score=22.93 Aligned_cols=82 Identities=9% Similarity=0.089 Sum_probs=45.5
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
|.-.+..+-+.+...|..+++|++++.. +.+.+.++. .++.+.....-++.-+...+..+.+..+..+.|
T Consensus 8 G~g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~----~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d 83 (370)
T cd08192 8 GAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLED----AGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCD 83 (370)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHH----cCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 4446777777778777788999987542 233333332 245443332233344556677777776554332
Q ss_pred cEEEEeCCeecc
Q 046608 104 PFFVLNSDVISE 115 (256)
Q Consensus 104 ~~lv~~~D~~~~ 115 (256)
.++=+.|=.+.+
T Consensus 84 ~IIaiGGGSviD 95 (370)
T cd08192 84 GVIAFGGGSALD 95 (370)
T ss_pred EEEEeCCchHHH
Confidence 444455545443
No 247
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=27.26 E-value=1.2e+02 Score=25.85 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=52.9
Q ss_pred CCccceeC-CcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccC--cEEEeecc------CCcCCCcHHHH-
Q 046608 22 PKPLVDFA-NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLE--IKITCSQE------TEPLGTAGPLA- 91 (256)
Q Consensus 22 pK~ll~i~-g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~--~~v~~~~~------~~~~g~~~s~~- 91 (256)
|=+++.+. +-.-|..+|+++..+ +++.++.-+...+...+.+.++++++. +++.+..+ .....+..+.+
T Consensus 89 ~~~~iRvKnE~~tl~~si~S~Lpa-i~~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYN 167 (347)
T PF06306_consen 89 PWAFIRVKNEAMTLAESIESILPA-IDEGVIGYNDCTDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYN 167 (347)
T ss_pred cceEEEEcchhhhHHHHHHHHHHH-HhccEEEeecCCCCHHHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhh
Confidence 45667773 456788999999988 888888776554444444555444332 22222111 11122333433
Q ss_pred HHHhhhcCCCCCcEEEEeCCeeccc
Q 046608 92 LARDKLIDDSGEPFFVLNSDVISEY 116 (256)
Q Consensus 92 ~~~~~i~~~~~~~~lv~~~D~~~~~ 116 (256)
.++..+.... +++=+.||+++..
T Consensus 168 y~ls~ipk~~--w~iKID~DhIy~~ 190 (347)
T PF06306_consen 168 YVLSFIPKNE--WAIKIDADHIYDT 190 (347)
T ss_pred hhhcccccce--EEEEeccceeecH
Confidence 2334444322 8999999999874
No 248
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=27.15 E-value=4.1e+02 Score=22.99 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=45.0
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCCh-------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQP-------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSG 102 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~-------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~ 102 (256)
|+-.+..+-+.+...| ++++||++... +.+.+.++. .++++.....-++.-+...+..+.+.++..+.
T Consensus 10 G~g~l~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~----~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~ 84 (380)
T cd08185 10 GAGKLNELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQ----AGVEVVVFDKVEPNPTTTTVMEGAALAREEGC 84 (380)
T ss_pred CcCHHHHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHH----cCCeEEEeCCccCCCCHHHHHHHHHHHHHcCC
Confidence 4456777777777766 88999997543 233333332 25555433333334456667777666655443
Q ss_pred CcEEEEeCCeecc
Q 046608 103 EPFFVLNSDVISE 115 (256)
Q Consensus 103 ~~~lv~~~D~~~~ 115 (256)
|.++=+.|=.+.+
T Consensus 85 D~IiavGGGS~iD 97 (380)
T cd08185 85 DFVVGLGGGSSMD 97 (380)
T ss_pred CEEEEeCCccHHH
Confidence 2344455544443
No 249
>PHA00673 acetyltransferase domain containing protein
Probab=26.64 E-value=93 Score=23.33 Aligned_cols=35 Identities=6% Similarity=0.047 Sum_probs=27.5
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHH
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~ 64 (256)
|+.|+.+.++.++..|+..++|..-+....|.=+.
T Consensus 103 G~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~ 137 (154)
T PHA00673 103 GMALLRATEALARDLGATGLYVSGPTEGRLVQLLP 137 (154)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHH
Confidence 56899999999999999999998766654444333
No 250
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=26.46 E-value=4.2e+02 Score=22.80 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=48.8
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCChH------HHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQPE------VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~~------~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
|.-.++.+-+.+.+.+.+++.|+++.... .+.+.++. .++.+......+..-+...+..+.+.+...+.|
T Consensus 7 G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~----~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d 82 (370)
T cd08551 7 GAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKE----AGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCD 82 (370)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHH----cCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 34457778888888777899999876532 23333332 144444333333444566777777666544332
Q ss_pred cEEEEeCCeecccchHHHHH
Q 046608 104 PFFVLNSDVISEYPLKQMIE 123 (256)
Q Consensus 104 ~~lv~~~D~~~~~~~~~~~~ 123 (256)
.++-+.|=.+.+ +-+++.
T Consensus 83 ~IiaiGGGs~~D--~AK~va 100 (370)
T cd08551 83 GVIAVGGGSVLD--TAKAIA 100 (370)
T ss_pred EEEEeCCchHHH--HHHHHH
Confidence 444455545543 344443
No 251
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.20 E-value=3.9e+02 Score=22.30 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHHHcCC-CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCC-cCC-CcHHHHHHHhhhcCCCCCcEE
Q 046608 30 NKPMILHQIEALKAVGV-TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETE-PLG-TAGPLALARDKLIDDSGEPFF 106 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i-~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~-~~g-~~~s~~~~~~~i~~~~~~~~l 106 (256)
+-+-++.+++....-.+ -+|.+|..... ...... .+.++++....... ... ....+...+...+.+ ++
T Consensus 99 ~gsnl~al~~~~~~~~~~~~i~~visn~~-~~~~lA----~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~D----li 169 (286)
T PRK06027 99 EDHCLGDLLWRWRSGELPVEIAAVISNHD-DLRSLV----ERFGIPFHHVPVTKETKAEAEARLLELIDEYQPD----LV 169 (286)
T ss_pred CCCCHHHHHHHHHcCCCCcEEEEEEEcCh-hHHHHH----HHhCCCEEEeccCccccchhHHHHHHHHHHhCCC----EE
Confidence 33455666766655322 34555544332 333333 33377776533221 111 122345555555554 88
Q ss_pred EEeCCe-ecc
Q 046608 107 VLNSDV-ISE 115 (256)
Q Consensus 107 v~~~D~-~~~ 115 (256)
|+.|-+ +++
T Consensus 170 vlagy~~il~ 179 (286)
T PRK06027 170 VLARYMQILS 179 (286)
T ss_pred EEecchhhcC
Confidence 888877 655
No 252
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.18 E-value=4.3e+02 Score=22.85 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
|.-.++.+-+.+...+..++.||++... +.+.+.+++ .++.+.....-.+.-+...+..+.+.++..+.|
T Consensus 7 G~g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~----~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D 82 (375)
T cd08194 7 GEGAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKK----EGIESAIFDDVVSEPTDESVEEGVKLAKEGGCD 82 (375)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHH----CCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCC
Confidence 4556777777777677788888887543 223333332 255544333333334566677777766554332
Q ss_pred cEEEEeCCeec
Q 046608 104 PFFVLNSDVIS 114 (256)
Q Consensus 104 ~~lv~~~D~~~ 114 (256)
.++=+.|=.+.
T Consensus 83 ~IIaiGGGS~~ 93 (375)
T cd08194 83 VIIALGGGSPI 93 (375)
T ss_pred EEEEeCCchHH
Confidence 34444444443
No 253
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.00 E-value=4.2e+02 Score=22.66 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe--
Q 046608 36 HQIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV-- 112 (256)
Q Consensus 36 ~~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-- 112 (256)
.-++.+..+|++.|-|.+.-.. +...++++.. ++.|..+.........-+..-+....+.+...+ .-.+.-+|+
T Consensus 91 ~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~a-k~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G--a~~i~i~DT~G 167 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHCTEADVSEQHIGMA-RELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG--ADCVYIVDSAG 167 (333)
T ss_pred HHHHHHHHCCCCEEEEEeccchHHHHHHHHHHH-HHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC--CCEEEEccCCC
Confidence 3467777888988888876443 3445555543 334666654443333333344444444444333 335677787
Q ss_pred -ecccchHHHHHHHHhcCC-ceEEEEE
Q 046608 113 -ISEYPLKQMIEFHRGHGG-EASIMVT 137 (256)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~-~~~i~~~ 137 (256)
.++.++.+++...++.-. +..+..+
T Consensus 168 ~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 168 AMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 556678888877665432 3444443
No 254
>PTZ00325 malate dehydrogenase; Provisional
Probab=25.96 E-value=1e+02 Score=26.26 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=38.0
Q ss_pred eEEEEeCCCCCccccCCCCCCCcccee-CCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHH
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDF-ANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i-~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~ 64 (256)
.+||.++|....-+. +. +-.+ .|..++..+++.+..++++.+++++....+......
T Consensus 78 DvVVitaG~~~~~~~-----tR-~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~ 135 (321)
T PTZ00325 78 DLVLICAGVPRKPGM-----TR-DDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIA 135 (321)
T ss_pred CEEEECCCCCCCCCC-----CH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH
Confidence 367888886432111 11 1112 456688899999999999999999987766665555
No 255
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.92 E-value=1.1e+02 Score=25.86 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=39.6
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhh
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
.||+++|...+- . ....-+--.|.+++..+.+.+.+.+++-++++++...+.+...+.++
T Consensus 74 ivvitaG~~~k~-g----~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~ 133 (312)
T cd05293 74 VVIVTAGARQNE-G----ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKL 133 (312)
T ss_pred EEEECCCCCCCC-C----CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHH
Confidence 577788865441 1 11111112577899999999999988888888876666666666554
No 256
>KOG3267 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.79 E-value=54 Score=22.77 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=31.0
Q ss_pred EEEEEEeCHhhHHhcccCCCCcchhhHHHHHhcCcEEEEEeCceEEecCCHHHHHHHHH
Q 046608 173 NAGIYLLNPSVLDRIELKPTSIEKEVFPEIAVENKLFAMVLPGFWMDIGQPKDYITGLR 231 (256)
Q Consensus 173 ~~Giy~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~di~t~~d~~~a~~ 231 (256)
.-|+|+++++++++++++-.+|...+.+..++. .-.+..+++.| |-++-.|......
T Consensus 10 ~kg~~iit~~ilkeir~dl~~fn~g~~~~fiqh-tsaaltinen~-d~d~qad~~~~ld 66 (138)
T KOG3267|consen 10 RKGCHIITNDILKEIREDLKDFNCGLAHFFIQH-TSAALTINENW-DADTQADMEDFLD 66 (138)
T ss_pred cCccEEecHHHHHHHHHHHhhccccceeeeeec-cceeeEecccC-CcchhhhHHHHHH
Confidence 357899999999998754434432222222221 12233444555 6777776654433
No 257
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.52 E-value=1.9e+02 Score=20.28 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHh
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE 66 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~ 66 (256)
...-+++.+.+.|+..+++..+...+++.+..++
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~ 100 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPGAESEELIEAARE 100 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHH
Confidence 4444555555555555555555444444444443
No 258
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.01 E-value=4.4e+02 Score=22.56 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=54.4
Q ss_pred HHHHHHHcCCCEEEEEccCCh-HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe---
Q 046608 37 QIEALKAVGVTEVVLAINYQP-EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV--- 112 (256)
Q Consensus 37 ~l~~l~~~~i~~i~vv~~~~~-~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~--- 112 (256)
-++.+..+|++.|.|.+.-.. +...++++. .++.|..+.........-+...+....+.+...+ .-.+..+|+
T Consensus 93 dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~-ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~G--a~~i~i~DT~G~ 169 (337)
T PRK08195 93 DLKMAYDAGVRVVRVATHCTEADVSEQHIGL-ARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYG--AQCVYVVDSAGA 169 (337)
T ss_pred HHHHHHHcCCCEEEEEEecchHHHHHHHHHH-HHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCC--CCEEEeCCCCCC
Confidence 367777788888887775443 344455543 3334666655444333334444444444444333 345677787
Q ss_pred ecccchHHHHHHHHhcC-CceEEEEE
Q 046608 113 ISEYPLKQMIEFHRGHG-GEASIMVT 137 (256)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~i~~~ 137 (256)
.++.++.+++...++.- .+..+..+
T Consensus 170 ~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 170 LLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 55666888887766542 34444443
No 259
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=24.79 E-value=2.5e+02 Score=23.92 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=29.8
Q ss_pred cccCCCCCCCcccee--CCcchHHHHHHHHHHcCCCEEEEEccC
Q 046608 14 LRPLTLSVPKPLVDF--ANKPMILHQIEALKAVGVTEVVLAINY 55 (256)
Q Consensus 14 l~~~~~~~pK~ll~i--~g~pli~~~l~~l~~~~i~~i~vv~~~ 55 (256)
|+..+.+.|-++..+ .+.+.+..+++.+.+.++++|+++..-
T Consensus 10 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~I~~~g~G 53 (340)
T PRK11382 10 DFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDIDRIYFVACG 53 (340)
T ss_pred HHHHHhhchHHHHHHHHhhhHHHHHHHHHHHhCCCCEEEEEEec
Confidence 444445566666666 456889999999988778888877643
No 260
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=24.79 E-value=1.1e+02 Score=21.00 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEE
Q 046608 29 ANKPMILHQIEALKAVGVTEVVLA 52 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i~~i~vv 52 (256)
.+.|-++..++.+...|.++|+++
T Consensus 39 E~~P~i~~~l~~l~~~G~~~i~lv 62 (103)
T cd03413 39 EGYPGLDDVLAKLKKAGIKKVTLM 62 (103)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEE
Confidence 478999999999999999988875
No 261
>PRK05086 malate dehydrogenase; Provisional
Probab=24.54 E-value=1.2e+02 Score=25.58 Aligned_cols=58 Identities=7% Similarity=0.102 Sum_probs=35.8
Q ss_pred eEEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHH
Q 046608 2 KALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64 (256)
Q Consensus 2 ~aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~ 64 (256)
.+||.|+|...+-+ .+..-+--.|.+++..+++.+.+.+++.+++++....+.+...+
T Consensus 71 DiVIitaG~~~~~~-----~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~ 128 (312)
T PRK05086 71 DVVLISAGVARKPG-----MDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIA 128 (312)
T ss_pred CEEEEcCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHH
Confidence 35777777532211 11111112456788899999999999988888877665444333
No 262
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=24.40 E-value=1.3e+02 Score=25.31 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=37.9
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhh
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
.||+++|...+-+. ..--+--.|.+++..+.+.+.+.+++-++++++...+.+...+.++
T Consensus 71 IVIitag~~~~~g~-----~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~~~ 130 (306)
T cd05291 71 IVVITAGAPQKPGE-----TRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKL 130 (306)
T ss_pred EEEEccCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Confidence 57778876433111 1111222467899999999999988888877776666555555543
No 263
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=24.38 E-value=2.9e+02 Score=23.86 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHc-CCCEEEEEc-cCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHH
Q 046608 33 MILHQIEALKAV-GVTEVVLAI-NYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALA 93 (256)
Q Consensus 33 li~~~l~~l~~~-~i~~i~vv~-~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~ 93 (256)
-+.+.++.+... +.+.+++|+ |++.|.+...+++.-+-..++-+.+.|.+ |--.+.+.-
T Consensus 85 ~I~~qld~vl~~~~~~~~i~VsDGaeDE~vlPiIqSr~~V~sV~RVVVkQs~--~iEsTYyll 145 (344)
T PF04123_consen 85 KIAEQLDEVLSKFDPDSAIVVSDGAEDERVLPIIQSRVPVDSVKRVVVKQSR--GIESTYYLL 145 (344)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecChhhhhhhHhhhccCceEEEEEEEEEcCC--CcHHHHHHH
Confidence 456666665554 578888887 45567777777764332244445555554 333445555
No 264
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=24.02 E-value=5e+02 Score=23.99 Aligned_cols=34 Identities=21% Similarity=0.015 Sum_probs=26.0
Q ss_pred cchHHHHHHHHHHcCCCEEEEEccCChHHHHHHH
Q 046608 31 KPMILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~ 64 (256)
.+.-+++++.|.+.|+++|+-+-|.....+.+.+
T Consensus 16 ~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al 49 (571)
T PRK07710 16 MTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDAL 49 (571)
T ss_pred chHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHH
Confidence 3568899999999999999988876655555444
No 265
>PLN02602 lactate dehydrogenase
Probab=23.90 E-value=1.4e+02 Score=25.81 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=38.9
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHh
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKE 66 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~ 66 (256)
.||++||...+-+ ....-+-..+.+++..+.+.+.+.+++-+++++....+.+...+.+
T Consensus 108 iVVitAG~~~k~g-----~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k 166 (350)
T PLN02602 108 LCIVTAGARQIPG-----ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWK 166 (350)
T ss_pred EEEECCCCCCCcC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHH
Confidence 5788888653321 1122222357789999999999998888888777666666555544
No 266
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=23.87 E-value=1.1e+02 Score=22.90 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=10.1
Q ss_pred cchHHHHHHHHHHcCCCEEEEE
Q 046608 31 KPMILHQIEALKAVGVTEVVLA 52 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i~~i~vv 52 (256)
.|.+.-.|+.+.+.|+++++++
T Consensus 98 ~P~i~~~l~~l~~~g~~~iivl 119 (159)
T cd03411 98 PPSIEEALEELKADGVDRIVVL 119 (159)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE
Confidence 3444444444444444444443
No 267
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=23.86 E-value=5.3e+02 Score=23.58 Aligned_cols=31 Identities=23% Similarity=0.092 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHH
Q 046608 34 ILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64 (256)
Q Consensus 34 i~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~ 64 (256)
-+++++.|.+.|++.++-+-|.....+.+.+
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al 34 (548)
T PRK08978 4 AQWVVHALRAQGVDTVFGYPGGAIMPVYDAL 34 (548)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHH
Confidence 3567777777777777777765544444444
No 268
>PLN00135 malate dehydrogenase
Probab=23.85 E-value=2.1e+02 Score=24.24 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=38.7
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHH-cCCCEEEEEccCChHHHHHHHHhh
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKA-VGVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~-~~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
.||++||...+- .....-+--.|..++..+...+.. ++++-++++++...+.+...+.+.
T Consensus 61 iVVitAG~~~k~-----g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~ 121 (309)
T PLN00135 61 IAVMVGGFPRKE-----GMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEF 121 (309)
T ss_pred EEEEeCCCCCCC-----CCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHH
Confidence 578888864331 112222222567899999999999 588888888876566555555543
No 269
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=23.72 E-value=3.7e+02 Score=24.90 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=41.2
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHH
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALAR 94 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~ 94 (256)
|..=|.+.++.++..|+.-++.+-.+. .+...+.++++..+.++++.....| ..|..+++-.+.
T Consensus 357 Gl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~-~~Gg~Gai~LA~ 422 (557)
T PRK13505 357 GFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVW-AKGGEGGVELAE 422 (557)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEeccc-ccCCcchHHHHH
Confidence 446788999999999987666655444 2435556666666668887755555 445545554443
No 270
>PRK08322 acetolactate synthase; Reviewed
Probab=23.42 E-value=5.1e+02 Score=23.65 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCCEEEEEccCChHHHHHHH
Q 046608 34 ILHQIEALKAVGVTEVVLAINYQPEVMLNFL 64 (256)
Q Consensus 34 i~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~ 64 (256)
-+.+++.|.+.|++.++.+.|.....+.+.+
T Consensus 4 ~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal 34 (547)
T PRK08322 4 ADLFVKCLENEGVEYIFGIPGEENLDLLEAL 34 (547)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcchHHHHHHH
Confidence 3566677777777777776665544444333
No 271
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=22.48 E-value=1.4e+02 Score=24.97 Aligned_cols=60 Identities=7% Similarity=0.087 Sum_probs=38.9
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhh
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
.||++||.... ... ..--+--.|.+++..+.+.+.+++++-++++++...+.+...+.+.
T Consensus 67 ivVitag~~rk-~g~----~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~~ 126 (299)
T TIGR01771 67 LVVITAGAPQK-PGE----TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKL 126 (299)
T ss_pred EEEECCCCCCC-CCC----CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence 57788886422 111 1111112467899999999999988888888876666666666554
No 272
>PRK10481 hypothetical protein; Provisional
Probab=22.40 E-value=4.1e+02 Score=21.31 Aligned_cols=86 Identities=12% Similarity=0.134 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe
Q 046608 33 MILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112 (256)
Q Consensus 33 li~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~ 112 (256)
+|..++..+... .++-|++-+ .+++.++.++|... +..+.+.......++...+..+...+...+. .++++.|-.
T Consensus 118 ~i~~lv~Al~~g--~riGVitP~-~~qi~~~~~kw~~~-G~~v~~~~aspy~~~~~~l~~aa~~L~~~ga-D~Ivl~C~G 192 (224)
T PRK10481 118 ILPPLVAAIVGG--HQVGVIVPV-EEQLAQQAQKWQVL-QKPPVFALASPYHGSEEELIDAGKELLDQGA-DVIVLDCLG 192 (224)
T ss_pred hHHHHHHHhcCC--CeEEEEEeC-HHHHHHHHHHHHhc-CCceeEeecCCCCCCHHHHHHHHHHhhcCCC-CEEEEeCCC
Confidence 446666666654 677777744 55666666666544 6666655544344666677777776754322 688888887
Q ss_pred ecccchHHHHHH
Q 046608 113 ISEYPLKQMIEF 124 (256)
Q Consensus 113 ~~~~~~~~~~~~ 124 (256)
+.. .....++.
T Consensus 193 ~~~-~~~~~le~ 203 (224)
T PRK10481 193 YHQ-RHRDLLQK 203 (224)
T ss_pred cCH-HHHHHHHH
Confidence 765 34444443
No 273
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=22.20 E-value=3e+02 Score=19.75 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=14.0
Q ss_pred HHHHHHcCCCEEEEEccCC
Q 046608 38 IEALKAVGVTEVVLAINYQ 56 (256)
Q Consensus 38 l~~l~~~~i~~i~vv~~~~ 56 (256)
++.|.+.|.++|.++....
T Consensus 1 ~~~L~~~G~r~i~~i~~~~ 19 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPP 19 (160)
T ss_dssp HHHHHHTT-SSEEEEESST
T ss_pred ChHHHHCCCCeEEEEecCC
Confidence 3678889999999999443
No 274
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=22.08 E-value=4.8e+02 Score=21.97 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCcccee-CCcchHHHHHHHHHHcCC--CEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhc
Q 046608 22 PKPLVDF-ANKPMILHQIEALKAVGV--TEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLI 98 (256)
Q Consensus 22 pK~ll~i-~g~pli~~~l~~l~~~~i--~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~ 98 (256)
|-.+.|= ++..++..+++.+.+.++ ++++++++-..... ...+ +.. ..-....|.+-++..+.....
T Consensus 17 ~~~~CpGCg~~~i~~~i~~al~~l~l~p~d~vivsdiG~s~~---~~~y-----l~~--~~~~g~mG~alpaAiGaklA~ 86 (301)
T PRK05778 17 PTTWCPGCGNFGILNAIIQALAELGLDPDKVVVVSGIGCSSK---IPGY-----FLS--HGLHTLHGRAIAFATGAKLAN 86 (301)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHhcCCCCCEEEEeCCcHhhh---hhhh-----ccc--CccchhhccHHHHHHHHHHHC
Confidence 3344444 445788888888888754 67777775543221 1111 111 111134466666666666665
Q ss_pred CCCCCcEEEEeCCe-ecccchHHHHHHHHhcCCceEEEEEe
Q 046608 99 DDSGEPFFVLNSDV-ISEYPLKQMIEFHRGHGGEASIMVTK 138 (256)
Q Consensus 99 ~~~~~~~lv~~~D~-~~~~~~~~~~~~~~~~~~~~~i~~~~ 138 (256)
.+. +++++.||- ++.....++....+ .+-+.++++..
T Consensus 87 pd~--~VV~i~GDG~~~~mg~~eL~tA~r-~nl~i~vIV~N 124 (301)
T PRK05778 87 PDL--EVIVVGGDGDLASIGGGHFIHAGR-RNIDITVIVEN 124 (301)
T ss_pred CCC--cEEEEeCccHHHhccHHHHHHHHH-HCCCcEEEEEe
Confidence 543 799999999 55555667766544 44556665543
No 275
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=22.03 E-value=2.8e+02 Score=20.32 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=28.2
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhh
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
|+.|+.++++.+...++..+.+.+...+..-....++.
T Consensus 84 G~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~ 121 (157)
T TIGR02406 84 ARRLLEALLERVACERVRHLETTITPDNQASRALFKAL 121 (157)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHh
Confidence 46799999999888888888887776665555555544
No 276
>PRK10494 hypothetical protein; Provisional
Probab=21.79 E-value=4e+02 Score=21.80 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=24.5
Q ss_pred ccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecccchHHHHHHHHhcC
Q 046608 79 QETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKQMIEFHRGHG 129 (256)
Q Consensus 79 ~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~ 129 (256)
.+....+|.+-.....+.++.. .+++++.+.- ..+....++..+
T Consensus 158 ~e~~s~nT~eNa~~~~~~~~~~---~iiLVTsa~H----m~RA~~~f~~~G 201 (259)
T PRK10494 158 TLDLPKDTEEEAAAVKQAIGDA---PFLLVTSASH----LPRAMIFFQQEG 201 (259)
T ss_pred eCCCCCCHHHHHHHHHHHhCCC---CEEEECCHHH----HHHHHHHHHHcC
Confidence 3455667777777777777654 4555554442 244444444443
No 277
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=21.73 E-value=3.6e+02 Score=20.31 Aligned_cols=91 Identities=9% Similarity=0.051 Sum_probs=52.4
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEe
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLN 109 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~ 109 (256)
+..-++...+.+.++ ++|+++.......+.+++...-...+..+....+.. ...+..+ .+++.-
T Consensus 19 ~~~~l~~~~~~i~~a--~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-----------~~~~~~~---D~vI~i 82 (179)
T cd05005 19 DEEELDKLISAILNA--KRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETT-----------TPAIGPG---DLLIAI 82 (179)
T ss_pred CHHHHHHHHHHHHhC--CeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCC-----------CCCCCCC---CEEEEE
Confidence 345677788888777 677776644444555555433233456665442210 1223333 466666
Q ss_pred CCeecccchHHHHHHHHhcCCceEEEE
Q 046608 110 SDVISEYPLKQMIEFHRGHGGEASIMV 136 (256)
Q Consensus 110 ~D~~~~~~~~~~~~~~~~~~~~~~i~~ 136 (256)
+-.-...++.++++..++.+...+.++
T Consensus 83 S~sG~t~~~i~~~~~ak~~g~~iI~IT 109 (179)
T cd05005 83 SGSGETSSVVNAAEKAKKAGAKVVLIT 109 (179)
T ss_pred cCCCCcHHHHHHHHHHHHCCCeEEEEE
Confidence 666555567778888888877554444
No 278
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=21.73 E-value=5.2e+02 Score=22.20 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=59.1
Q ss_pred hhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeec--ccchHHHHHHHHhcCCceEEEEEecCCCcCc
Q 046608 68 EKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVIS--EYPLKQMIEFHRGHGGEASIMVTKVDEPSKY 145 (256)
Q Consensus 68 ~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 145 (256)
.+++|.+|..+ +...|.+..+....+.+.......++|..+|.-+ -.++.+....... ..++.+++-.+-. -..
T Consensus 111 ~~r~ga~V~~v--~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~-k~~~lllVD~VaS-lgg 186 (385)
T KOG2862|consen 111 ARRYGAEVDVV--EADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCH-KHEALLLVDTVAS-LGG 186 (385)
T ss_pred HHhhCceeeEE--ecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhh-cCCeEEEEechhh-cCC
Confidence 34457777766 4467888888777777777665579999999933 2334444443333 3344444432211 111
Q ss_pred eeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhhHHhccc
Q 046608 146 GVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSVLDRIEL 189 (256)
Q Consensus 146 ~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~ 189 (256)
.-...|+ ..|.-..--.+...+--...++-.|++.++..+..
T Consensus 187 t~F~mDe--wgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~ 228 (385)
T KOG2862|consen 187 TEFEMDE--WGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRD 228 (385)
T ss_pred ccceehh--hcccEEEecchhhcCCCCCcceeecCHHHHHHHhh
Confidence 1122233 12211111000001112234567888888888854
No 279
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=21.69 E-value=5.4e+02 Score=22.36 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHc---CCCEEEEEccCCh-------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCC
Q 046608 32 PMILHQIEALKAV---GVTEVVLAINYQP-------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDS 101 (256)
Q Consensus 32 pli~~~l~~l~~~---~i~~i~vv~~~~~-------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~ 101 (256)
-.+..+-+.+... |.++++|++++.. +.+.+.++. .++++......++.-+...+..+.+.+...+
T Consensus 9 g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~----~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~ 84 (383)
T cd08186 9 GAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDE----HGIEYVLYNKVTPNPTVDQVDEAAKLGREFG 84 (383)
T ss_pred CHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHH----cCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC
Confidence 3456665666655 6688888887552 234444433 2455544333344445566666666665543
Q ss_pred CCcEEEEeCCeec
Q 046608 102 GEPFFVLNSDVIS 114 (256)
Q Consensus 102 ~~~~lv~~~D~~~ 114 (256)
.|-++-+.|=.+.
T Consensus 85 ~D~IIaiGGGS~i 97 (383)
T cd08186 85 AQAVIAIGGGSPI 97 (383)
T ss_pred CCEEEEeCCccHH
Confidence 3244445554444
No 280
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=21.65 E-value=2.3e+02 Score=18.19 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=32.2
Q ss_pred CChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCe
Q 046608 55 YQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDV 112 (256)
Q Consensus 55 ~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~ 112 (256)
.+.+-+...++.+ ++..+ .-....|...++...+..+++. .-+.++.|-
T Consensus 20 ~DGe~ia~~~~~~----G~~~i--RGSs~rgg~~Alr~~~~~lk~G---~~~~itpDG 68 (74)
T PF04028_consen 20 RDGELIARVLERF----GFRTI--RGSSSRGGARALREMLRALKEG---YSIAITPDG 68 (74)
T ss_pred cCHHHHHHHHHHc----CCCeE--EeCCCCcHHHHHHHHHHHHHCC---CeEEEeCCC
Confidence 4455555555554 55554 2345678889999999999854 566777764
No 281
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=21.57 E-value=1.8e+02 Score=22.76 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=37.1
Q ss_pred eCCcchHHHHHHHHHHc---CCCEEEEEccCChHHHHHHHHhhhhccCcEEEe
Q 046608 28 FANKPMILHQIEALKAV---GVTEVVLAINYQPEVMLNFLKEFEKKLEIKITC 77 (256)
Q Consensus 28 i~g~pli~~~l~~l~~~---~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~ 77 (256)
=|+-|.+.+.-+....+ .++.++|+++.-++...+.+.....++|+++..
T Consensus 175 rgDl~~i~rk~elYer~~gvki~~vivitpFihdr~p~~~kAmAe~mGIeii~ 227 (231)
T COG5493 175 RGDLPVIRRKKELYERAKGVKINKVIVITPFIHDRYPDRVKAMAERMGIEIIP 227 (231)
T ss_pred ccchHHHHHHHHHHHHhcCCccceEEEEcccccccChHHHHHHHHHcCceecC
Confidence 35667777777666555 378999999888887777777777777888763
No 282
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=21.48 E-value=6.3e+02 Score=23.04 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=50.3
Q ss_pred cceeCCc--chHHHHHHHHHHc----C--CCEEEEEccC--ChH---HHHHHHHhhhhcc-CcEEEeeccC-CcCCCcHH
Q 046608 25 LVDFANK--PMILHQIEALKAV----G--VTEVVLAINY--QPE---VMLNFLKEFEKKL-EIKITCSQET-EPLGTAGP 89 (256)
Q Consensus 25 ll~i~g~--pli~~~l~~l~~~----~--i~~i~vv~~~--~~~---~i~~~~~~~~~~~-~~~v~~~~~~-~~~g~~~s 89 (256)
.+|+.|+ .-+.+-++.+.+. + ..-++|+.+. +.+ .+.+.+..+..++ ..++.++.-. +.-..+.+
T Consensus 252 IvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~ 331 (499)
T PF05679_consen 252 IVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAA 331 (499)
T ss_pred EEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHH
Confidence 4566565 5666666666554 1 2224444433 122 3444555554433 3333333323 45556677
Q ss_pred HHHHHhhhcCCCCCcEEEEeCCeecccchHHHHH
Q 046608 90 LALARDKLIDDSGEPFFVLNSDVISEYPLKQMIE 123 (256)
Q Consensus 90 ~~~~~~~i~~~~~~~~lv~~~D~~~~~~~~~~~~ 123 (256)
+-.+...++.+. -+++++-|+.++.++-.=++
T Consensus 332 Ld~g~~~~~~d~--L~f~~Dvd~~f~~~fL~rcR 363 (499)
T PF05679_consen 332 LDVGAKKFPPDS--LLFFCDVDMVFTSDFLNRCR 363 (499)
T ss_pred HHhhcccCCCCc--EEEEEeCCcccCHHHHHHHH
Confidence 777877776542 45666666677766433333
No 283
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=21.42 E-value=5.4e+02 Score=23.54 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=23.5
Q ss_pred CcchH--HHHHHHHHHcCCCEEEEEccCChHHHHHHHHhhh
Q 046608 30 NKPMI--LHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFE 68 (256)
Q Consensus 30 g~pli--~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~ 68 (256)
||+.| +-++++ ..+++..|++.+|....++.+.+....
T Consensus 173 GKt~Lal~~i~~~-~~~dv~~V~~~IGer~rev~e~~~~~~ 212 (501)
T TIGR00962 173 GKTAVAIDTIINQ-KDSDVYCVYVAIGQKASTVAQVVRKLE 212 (501)
T ss_pred CccHHHHHHHHhh-cCCCeEEEEEEccCChHHHHHHHHHHH
Confidence 45544 343333 344455577778888888888877653
No 284
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.24 E-value=1.3e+02 Score=19.93 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHHcCCCEEEEEc
Q 046608 31 KPMILHQIEALKAVGVTEVVLAI 53 (256)
Q Consensus 31 ~pli~~~l~~l~~~~i~~i~vv~ 53 (256)
.|-+...++.+...|+++|+++-
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEe
Confidence 79999999999999999988765
No 285
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=21.24 E-value=1.2e+02 Score=23.90 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=47.4
Q ss_pred cEEEEeCCeecccchHHHHHHHHhcCCceEEEEEecCCCcCceeEEEcCCCCeEeEEeecCCCCCCCeEEEEEEEeCHhh
Q 046608 104 PFFVLNSDVISEYPLKQMIEFHRGHGGEASIMVTKVDEPSKYGVVVMEETMGKVEKFVEKPKNFVGNKINAGIYLLNPSV 183 (256)
Q Consensus 104 ~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~ 183 (256)
.++.+.+|+++..++.++.+.... +..... +.. ....... ... ... .+.+........++|+.+++++.
T Consensus 101 rilyLD~D~lv~~dl~~lf~~~~~-~~~~~a-~~~-~~~~~~~----~~~-~~~---~~~~~~~~~~~fNsGv~l~~~~~ 169 (250)
T PF01501_consen 101 RILYLDADTLVLGDLDELFDLDLQ-GKYLAA-VED-ESFDNFP----NKR-FPF---SERKQPGNKPYFNSGVMLFNPSK 169 (250)
T ss_dssp EEEEE-TTEEESS-SHHHHC---T-TSSEEE-EE-----HHHH----TST-TSS---EEECESTTTTSEEEEEEEEEHHH
T ss_pred eEEEEcCCeeeecChhhhhcccch-hhhccc-ccc-chhhhhh----hcc-cch---hhcccCcccccccCcEEEEeech
Confidence 899999999998899998875444 222222 211 0000000 000 000 01111123468999999999766
Q ss_pred HHh------c----ccCC---CCcchhhHHHHHhcCcEEEEEe
Q 046608 184 LDR------I----ELKP---TSIEKEVFPEIAVENKLFAMVL 213 (256)
Q Consensus 184 ~~~------l----~~~~---~~~~~~~~~~l~~~~~v~~~~~ 213 (256)
+.. + +... ....+++++.+.. +.+...+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~-~~~~~L~~ 211 (250)
T PF01501_consen 170 WRKENILQKLIEWLEQNGMKLGFPDQDILNIVFY-GNIKPLPC 211 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHT-TGEEEEEG
T ss_pred hhhhhhhhhhhhhhhhcccccCcCchHHHhhhcc-ceeEEECc
Confidence 542 1 1111 1234677777765 55555553
No 286
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=21.20 E-value=96 Score=20.60 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCc
Q 046608 36 HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTA 87 (256)
Q Consensus 36 ~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~ 87 (256)
.+++.+.+ |-...+++...-.+.+..++.....+.++++++++.-...|.+
T Consensus 20 qt~Kai~k-g~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkA 70 (84)
T PRK13600 20 ETLKALKK-DQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKH 70 (84)
T ss_pred HHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHH
Confidence 34555554 3334444454445667788888887779999888655444443
No 287
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=21.18 E-value=3.6e+02 Score=23.18 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCEEEEEccCChHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCCcEEEEeCCeecc
Q 046608 36 HQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISE 115 (256)
Q Consensus 36 ~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~~~~ 115 (256)
..|..|..+|.+-+-+.+... +-.+.+.....+..++++--.+.. + ..++...... -+.+=+-+|..-..
T Consensus 40 ~QI~~L~~aG~dIVRvtv~~~--e~A~A~~~Ik~~~~vPLVaDiHf~-----~--rla~~~~~~g-~~k~RINPGNig~~ 109 (361)
T COG0821 40 AQIKALERAGCDIVRVTVPDM--EAAEALKEIKQRLNVPLVADIHFD-----Y--RLALEAAECG-VDKVRINPGNIGFK 109 (361)
T ss_pred HHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHHhCCCCEEEEeecc-----H--HHHHHhhhcC-cceEEECCcccCcH
Confidence 457788999988777777433 222334444444456655333332 1 2333333220 01477778888777
Q ss_pred cchHHHHHHHHhcCCceEEEEE
Q 046608 116 YPLKQMIEFHRGHGGEASIMVT 137 (256)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~i~~~ 137 (256)
..+..+++..++.+...-|.+.
T Consensus 110 ~~v~~vVe~Ak~~g~piRIGVN 131 (361)
T COG0821 110 DRVREVVEAAKDKGIPIRIGVN 131 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEecc
Confidence 7799999999999888777664
No 288
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=20.76 E-value=6.8e+02 Score=23.17 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=55.6
Q ss_pred ChHHHHHHHHhhhhccCcEEEeeccC-C--cCCCcHHHHHHHhhhcCCCCCcEEEEeCCe-ecc-cchHHHHHHHHhcCC
Q 046608 56 QPEVMLNFLKEFEKKLEIKITCSQET-E--PLGTAGPLALARDKLIDDSGEPFFVLNSDV-ISE-YPLKQMIEFHRGHGG 130 (256)
Q Consensus 56 ~~~~i~~~~~~~~~~~~~~v~~~~~~-~--~~g~~~s~~~~~~~i~~~~~~~~lv~~~D~-~~~-~~~~~~~~~~~~~~~ 130 (256)
..+++++++..+ |+......+. . .-|+-..+..|.-.+..- .++|++=-+ ..+ +.+..+..+...-+.
T Consensus 458 ~~ee~r~hl~~~----Gl~g~la~~si~~LSGGQKsrvafA~~~~~~P---hlLVLDEPTNhLD~dsl~AL~~Al~~F~G 530 (582)
T KOG0062|consen 458 TEEEIRRHLGSF----GLSGELALQSIASLSGGQKSRVAFAACTWNNP---HLLVLDEPTNHLDRDSLGALAKALKNFNG 530 (582)
T ss_pred CHHHHHHHHHhc----CCCchhhhccccccCCcchhHHHHHHHhcCCC---cEEEecCCCccccHHHHHHHHHHHHhcCC
Confidence 466777787765 4544333332 1 223444555555555443 477776555 445 448888888888888
Q ss_pred ceEEEEEecCCC-c--CceeEEEcCCCCeEeEEee
Q 046608 131 EASIMVTKVDEP-S--KYGVVVMEETMGKVEKFVE 162 (256)
Q Consensus 131 ~~~i~~~~~~~~-~--~~~~v~~~~~~~~v~~~~e 162 (256)
.++++++..+-. . ..-|++ ++ |+|+.|..
T Consensus 531 GVv~VSHd~~fi~~~c~E~Wvv--e~-g~vt~ieg 562 (582)
T KOG0062|consen 531 GVVLVSHDEEFISSLCKELWVV--ED-GKVTPIEG 562 (582)
T ss_pred cEEEEECcHHHHhhcCceeEEE--cC-CcEEeeec
Confidence 788887765321 1 122333 33 78887653
No 289
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=20.61 E-value=4.6e+02 Score=24.02 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEccCC--hHHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhh
Q 046608 29 ANKPMILHQIEALKAVGVTEVVLAINYQ--PEVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKL 97 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i~~i~vv~~~~--~~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i 97 (256)
.|-+-|.+-++++++.|+.-|+.+-... .+.-.+.++++..+.++.+.....| ..|..++...|...+
T Consensus 340 ~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~~~~-~~GG~Ga~eLA~~Vi 409 (524)
T cd00477 340 KGFANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGAFVAVSEHW-AEGGKGAVELAEAVI 409 (524)
T ss_pred hHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEehhh-hhhhhhHHHHHHHHH
Confidence 4668889999999999986555444333 2333445555555557777766545 445556665555444
No 290
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=20.45 E-value=4.9e+02 Score=21.42 Aligned_cols=96 Identities=17% Similarity=0.257 Sum_probs=50.4
Q ss_pred CccceeCCcchHHHHHHHHHHc--CCCEEEEEccCChH---HHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhh
Q 046608 23 KPLVDFANKPMILHQIEALKAV--GVTEVVLAINYQPE---VMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKL 97 (256)
Q Consensus 23 K~ll~i~g~pli~~~l~~l~~~--~i~~i~vv~~~~~~---~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i 97 (256)
+..--+.+.+.+...++.++.. ..+++.++.++... ...+.+++..++.++++....-. +..-+..++..+
T Consensus 106 ~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~----~~~~~~~~~~~l 181 (294)
T PF04392_consen 106 KNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVP----SSEDLEQALEAL 181 (294)
T ss_dssp SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEES----SGGGHHHHHHHH
T ss_pred CCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecC----cHhHHHHHHHHh
Confidence 3444455678888899888876 26888777765533 33445555455567776543222 233455566666
Q ss_pred cCCCCCcEEEEeCCeecccchHHHHHH
Q 046608 98 IDDSGEPFFVLNSDVISEYPLKQMIEF 124 (256)
Q Consensus 98 ~~~~~~~~lv~~~D~~~~~~~~~~~~~ 124 (256)
.... ..+++..|.........++..
T Consensus 182 ~~~~--da~~~~~~~~~~~~~~~i~~~ 206 (294)
T PF04392_consen 182 AEKV--DALYLLPDNLVDSNFEAILQL 206 (294)
T ss_dssp CTT---SEEEE-S-HHHHHTHHHHHHH
T ss_pred hccC--CEEEEECCcchHhHHHHHHHH
Confidence 5543 477777888665555555553
No 291
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=20.26 E-value=1.8e+02 Score=24.39 Aligned_cols=39 Identities=5% Similarity=0.052 Sum_probs=27.5
Q ss_pred CCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhh
Q 046608 29 ANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 29 ~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
.|..++..+++.+.+.+++.+++++....+.+...+.++
T Consensus 93 ~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~ 131 (305)
T TIGR01763 93 MNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQK 131 (305)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH
Confidence 466788888888888877777777666666666666543
No 292
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=20.19 E-value=1.9e+02 Score=24.49 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=38.1
Q ss_pred EEEEeCCCCCccccCCCCCCCccceeCCcchHHHHHHHHHHcCCCEEEEEccCChHHHHHHHHhh
Q 046608 3 ALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF 67 (256)
Q Consensus 3 aiIlaaG~g~Rl~~~~~~~pK~ll~i~g~pli~~~l~~l~~~~i~~i~vv~~~~~~~i~~~~~~~ 67 (256)
.||++||...+- . ....-+--.|.+++..+++.+.+.+++-++++++...+.+...+.++
T Consensus 76 ivIitag~~~k~-g----~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~ 135 (315)
T PRK00066 76 LVVITAGAPQKP-G----ETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKL 135 (315)
T ss_pred EEEEecCCCCCC-C----CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHH
Confidence 577788764331 1 11111222467889999999999888888887776666665555543
No 293
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=20.12 E-value=5.7e+02 Score=22.07 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=46.0
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEccCCh------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcCCCCC
Q 046608 30 NKPMILHQIEALKAVGVTEVVLAINYQP------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLIDDSGE 103 (256)
Q Consensus 30 g~pli~~~l~~l~~~~i~~i~vv~~~~~------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~~~~~ 103 (256)
|.-.++.+-+.+.+.+.+++.|+++..- +.+.+.+++ .++.+......++.-+...+..+.+.+...+.|
T Consensus 10 G~g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~----~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D 85 (376)
T cd08193 10 GAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEA----AGIEVTVFDDVEADPPEAVVEAAVEAARAAGAD 85 (376)
T ss_pred CcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHH----cCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCC
Confidence 3445677777777777789999987642 223333322 245554333344445667777777777554433
Q ss_pred cEEEEeCCeecc
Q 046608 104 PFFVLNSDVISE 115 (256)
Q Consensus 104 ~~lv~~~D~~~~ 115 (256)
.++=+.|=.+.+
T Consensus 86 ~IIaiGGGs~iD 97 (376)
T cd08193 86 GVIGFGGGSSMD 97 (376)
T ss_pred EEEEeCCchHHH
Confidence 444454444443
No 294
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=20.02 E-value=5.9e+02 Score=22.16 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCEEEEEccCCh---------------HHHHHHHHhhhhccCcEEEeeccCCcCCCcHHHHHHHhhhcC
Q 046608 35 LHQIEALKAVGVTEVVLAINYQP---------------EVMLNFLKEFEKKLEIKITCSQETEPLGTAGPLALARDKLID 99 (256)
Q Consensus 35 ~~~l~~l~~~~i~~i~vv~~~~~---------------~~i~~~~~~~~~~~~~~v~~~~~~~~~g~~~s~~~~~~~i~~ 99 (256)
..-++.+..+|++.|.++..-.. +.+.+.++ +.+..|..+.+..+..+.-+..-+....+.+..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~-~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVE-YAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHH-HHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 45577788889888887765433 22222333 223347777766554443444444444444443
Q ss_pred CCCCcEEEEeCCe---ecccchHHHHHHHHhc
Q 046608 100 DSGEPFFVLNSDV---ISEYPLKQMIEFHRGH 128 (256)
Q Consensus 100 ~~~~~~lv~~~D~---~~~~~~~~~~~~~~~~ 128 (256)
.+ .-.+..+|+ ..+..+.+++....+.
T Consensus 157 ~G--a~~I~l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 157 AG--ADRVRFCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred CC--CCEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 32 345677888 3455577777765543
Done!