BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046610
         (411 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4WC70|HIS8_ENT38 Histidinol-phosphate aminotransferase OS=Enterobacter sp. (strain
           638) GN=hisC PE=3 SV=1
          Length = 353

 Score = 33.1 bits (74), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 22/147 (14%)

Query: 260 EGYAQLLQYREEMEMIN---SHNIIIIETSTKQQSSDEIFDCMFVF-LYD-TAYAFKTRC 314
           E YAQ    + E  +++      I ++  +  +   D +  C   + +Y  +A  F   C
Sbjct: 62  ENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAVLYCQPTYGMYSVSAETFGVEC 121

Query: 315 RMLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRL 374
           R +L++D W++D P  +        D  D V  V  C     N        ++V   L +
Sbjct: 122 RNVLSLDDWQLDLPAIA--------DNLDGVKVVFVCS--PNNPTGQIINPQDVRTLLEM 171

Query: 375 ERGKGLCILGDGDNGIDEAVEEFLPYA 401
            RGK L +        DEA  EF P A
Sbjct: 172 TRGKALVV-------ADEAYIEFCPQA 191


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,817,602
Number of Sequences: 539616
Number of extensions: 6441370
Number of successful extensions: 15393
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 15392
Number of HSP's gapped (non-prelim): 5
length of query: 411
length of database: 191,569,459
effective HSP length: 120
effective length of query: 291
effective length of database: 126,815,539
effective search space: 36903321849
effective search space used: 36903321849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)