Query 046610
Match_columns 411
No_of_seqs 172 out of 1074
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 93.3 0.15 5.3E-06 38.6 5.6 40 156-195 34-73 (76)
2 1wj2_A Probable WRKY transcrip 93.1 0.17 5.8E-06 38.6 5.6 47 149-195 29-76 (78)
3 2rpr_A Flywch-type zinc finger 73.4 5.5 0.00019 30.4 5.3 45 144-195 26-73 (87)
4 3kks_A Integrase, IN; beta-str 53.6 51 0.0017 26.3 8.0 66 316-393 3-68 (152)
5 3l3u_A POL polyprotein; DNA in 44.9 59 0.002 26.5 7.2 66 315-392 9-74 (163)
6 3hot_A Transposable element ma 43.3 52 0.0018 30.8 7.3 59 327-388 185-252 (345)
7 1bco_A MUA domain II, bacterio 41.9 50 0.0017 31.1 6.9 71 315-390 16-94 (327)
8 1cxq_A Avian sarcoma virus int 41.7 83 0.0028 25.7 7.6 70 316-392 12-81 (162)
9 3av9_A Integrase, IN; protein- 41.1 59 0.002 27.4 6.7 66 315-392 29-94 (183)
10 1c0m_A Protein (integrase); HI 31.8 1.5E+02 0.0051 26.2 8.1 70 316-392 11-80 (238)
11 3f9k_A Integrase; protein-prot 29.5 1.5E+02 0.005 25.5 7.5 65 316-392 60-124 (210)
12 2x78_A Integrase; viral protei 29.4 1.4E+02 0.0047 25.2 7.2 69 316-392 14-83 (200)
13 1ex4_A Integrase; SH3-like dom 29.1 90 0.0031 27.6 6.1 66 316-393 10-75 (239)
14 1c6v_A Protein (SIV integrase) 27.6 1.8E+02 0.006 23.2 7.3 63 316-390 10-72 (164)
15 2bw3_A Transposase; DNA recomb 26.9 66 0.0022 32.3 5.2 63 344-410 130-194 (534)
16 3hph_A Integrase, IN; protein- 24.6 2E+02 0.007 24.6 7.5 66 316-393 61-126 (219)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=93.31 E-value=0.15 Score=38.62 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=34.7
Q ss_pred eEEEEEecCCCCceEEEEEEccCcceEEEeeecCCCCCcc
Q 046610 156 TCISCECSDLSCDWKITTMKEHATKMFIISYITPVHKCTK 195 (411)
Q Consensus 156 ~r~~~~C~~~~CpwrV~as~~~~~~~w~I~~~~~~HnC~~ 195 (411)
.|-.++|...+||.+-.+.+........++++.++|||..
T Consensus 34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 73 (76)
T 2ayd_A 34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73 (76)
T ss_dssp CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence 5666899999999999999987777778889999999975
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=93.13 E-value=0.17 Score=38.60 Aligned_cols=47 Identities=6% Similarity=0.096 Sum_probs=36.9
Q ss_pred EEeeCC-CeEEEEEecCCCCceEEEEEEccCcceEEEeeecCCCCCcc
Q 046610 149 CKMDNT-STCISCECSDLSCDWKITTMKEHATKMFIISYITPVHKCTK 195 (411)
Q Consensus 149 ~v~rS~-~~r~~~~C~~~~CpwrV~as~~~~~~~w~I~~~~~~HnC~~ 195 (411)
+..++. -.|-.++|...+||.+-.+.+........++++.++|||..
T Consensus 29 K~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 76 (78)
T 1wj2_A 29 KVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL 76 (78)
T ss_dssp ECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred cccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence 333443 35666899999999999999876666677889999999975
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=73.44 E-value=5.5 Score=30.44 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=33.0
Q ss_pred cCeeEEEeeCCCeEEEEEecC---CCCceEEEEEEccCcceEEEeeecCCCCCcc
Q 046610 144 DGIKLCKMDNTSTCISCECSD---LSCDWKITTMKEHATKMFIISYITPVHKCTK 195 (411)
Q Consensus 144 ~~f~~~v~rS~~~r~~~~C~~---~~CpwrV~as~~~~~~~w~I~~~~~~HnC~~ 195 (411)
.|+.|...+....+....|.. .+|+.+|..... . +. ....|||++
T Consensus 26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~~----~--~~-~~~~HnH~p 73 (87)
T 2rpr_A 26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQGH----R--IM-VMRSHCHQP 73 (87)
T ss_dssp TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEETT----E--EE-ECSCCSSCC
T ss_pred CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcCC----C--EE-CCCCcCCCC
Confidence 477887777666677799986 589999887642 2 22 467899987
No 4
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=53.58 E-value=51 Score=26.33 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=44.4
Q ss_pred eeeeeeceeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHHH
Q 046610 316 MLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDEA 393 (411)
Q Consensus 316 ~vl~iD~t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~A 393 (411)
.++.+|.|+..+ .+.++.+|..-+.. +++.+ ..++.+...-+|..+....+ |..|.||+.....+.
T Consensus 3 ~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g-----p~~i~sDnG~~f~s~ 68 (152)
T 3kks_A 3 HLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT-----VLHLHSDNGPCFTAH 68 (152)
T ss_dssp CEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC-----CSEEEECSCHHHHSH
T ss_pred cEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC-----CcEEecCCchHhhHH
Confidence 467899998832 25556667765544 56655 46777776666666655554 478999999877654
No 5
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=44.86 E-value=59 Score=26.54 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=44.6
Q ss_pred ceeeeeeceeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHH
Q 046610 315 RMLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDE 392 (411)
Q Consensus 315 r~vl~iD~t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~ 392 (411)
-.++.+|.|+..++ +.++-+|...+.. +++.+ ..++.+.-.-+|..+...++. .+|.||+.....+
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~~-----~~i~sD~G~~f~s 74 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWPV-----KTVHTDNGSNFTS 74 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSCC-----CEEEECCCGGGGS
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcCC-----cEEeecChHhhhh
Confidence 34788999998643 4666677766644 66665 456777766666666555542 5799999987643
No 6
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=43.26 E-value=52 Score=30.78 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=38.4
Q ss_pred cCCCCceEEEEEecCCCCEEEeeeeeec---ccchhhHHHHHHHHHhhc----CCC--CCCcEEEEccCch
Q 046610 327 GPYKSVMLIAVCRDRNDVVLPVAFCEVQ---EENLDSWAFFLKNVNDGL----RLE--RGKGLCILGDGDN 388 (411)
Q Consensus 327 ~~y~g~ll~avg~d~~~~~~~lAfalv~---~E~~e~w~WfL~~l~~~l----~~~--~~~~~~iisDr~~ 388 (411)
..+++.++++.+.+..| .+++.+++ .-|.+.|.-||+.+...+ +.. .+.++++++|..+
T Consensus 185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 34566777777778777 56677766 567888888888765532 110 0124789999865
No 7
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=41.95 E-value=50 Score=31.13 Aligned_cols=71 Identities=15% Similarity=0.016 Sum_probs=47.4
Q ss_pred ceeeeeeceeeccCC---CC---ceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcE--EEEccC
Q 046610 315 RMLLTVDGWEIDGPY---KS---VMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGL--CILGDG 386 (411)
Q Consensus 315 r~vl~iD~t~~~~~y---~g---~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~--~iisDr 386 (411)
..++.+|+|++.... .| ...+.+-+|...+ .++||.+...|+.+.-.-+|.......+ .|. +|.+|+
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G----~P~~~~i~sDn 90 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG----IPEDFHITIDN 90 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC----EESSCEEECCC
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC----CCCCcEEEeeC
Confidence 347889998865431 23 3445556776655 4588999888888887777766555443 234 899999
Q ss_pred chHH
Q 046610 387 DNGI 390 (411)
Q Consensus 387 ~~gL 390 (411)
.++.
T Consensus 91 G~~f 94 (327)
T 1bco_A 91 TRGA 94 (327)
T ss_dssp TTST
T ss_pred chhh
Confidence 8754
No 8
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=41.67 E-value=83 Score=25.72 Aligned_cols=70 Identities=11% Similarity=-0.095 Sum_probs=45.3
Q ss_pred eeeeeeceeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHH
Q 046610 316 MLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDE 392 (411)
Q Consensus 316 ~vl~iD~t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~ 392 (411)
.++.+|.|+.... +|..+.++.+|...+. ++++.+- ..+.+.-.-+|+.+....+ .|.+|.||+.....+
T Consensus 12 ~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 12 QIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVLG----RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEECCSCHHHHS
T ss_pred CEEEeeeeecccC-CCCEEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHHC----CCeEEEeCCchhhhh
Confidence 4788999987543 3456666677776544 4566665 5666665555555544443 246899999987754
No 9
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=41.11 E-value=59 Score=27.44 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=39.8
Q ss_pred ceeeeeeceeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHH
Q 046610 315 RMLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDE 392 (411)
Q Consensus 315 r~vl~iD~t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~ 392 (411)
..++.+|.++..++| ++++ +|..-+.. +|+.+- .++.....-++..+...++ +.+|.+|+.....+
T Consensus 29 ~~~w~~D~~~~~g~~---~l~~--vD~~Sr~~-~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~i~sDnG~ef~s 94 (183)
T 3av9_A 29 PGIWQLDCTHLEGKV---ILVA--VHVASGYI-EAEVIP-AETGQETAYFLLKLAGRWP-----VKTVHTDNGSNFTS 94 (183)
T ss_dssp TTEEEEEEEEETTEE---EEEE--EETTTTEE-EEEEES-SCCHHHHHHHHHHHHHHSC-----CCEEECSSHHHHHC
T ss_pred CCEEEEeccccCCcE---EEEE--EECCCCCE-EEEEeC-CccchHHHHHHHHHHHHcC-----CcEEEecCchhcch
Confidence 447889999983332 4444 46665554 676554 4555555444444444443 26899999987753
No 10
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=31.84 E-value=1.5e+02 Score=26.17 Aligned_cols=70 Identities=11% Similarity=-0.119 Sum_probs=47.2
Q ss_pred eeeeeeceeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHH
Q 046610 316 MLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDE 392 (411)
Q Consensus 316 ~vl~iD~t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~ 392 (411)
.++.+|.|+.... +|-.+.++.+|..-+ +++++.+- .++.+.-.-+|..+....+. |.+|.||+.....+
T Consensus 11 ~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g~----p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 11 QIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLGR----PKAIKTDNGSCFTS 80 (238)
T ss_dssp SEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHCC----CSEEEECSCHHHHS
T ss_pred CEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhCC----CcEEEECCCCcccc
Confidence 4788999987643 344555666676544 45567665 77777766666666555542 46899999988754
No 11
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=29.48 E-value=1.5e+02 Score=25.47 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=42.3
Q ss_pred eeeeeeceeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHH
Q 046610 316 MLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDE 392 (411)
Q Consensus 316 ~vl~iD~t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~ 392 (411)
.++.+|.|++.++ +.++-+|..-+ ++.++.+-. ++...-.-+|..+...++. + .|.||+.....+
T Consensus 60 ~~w~~D~~~~~~~-----y~l~~vD~~sr-~~~~~~~~~-~~~~~~~~~l~~~~~~~g~----~-~i~sDnG~~F~s 124 (210)
T 3f9k_A 60 GTWQMDCTHLEGK-----IIIVAVHVASG-FIEAEVIPQ-ESGRQTALFLLKLASRWPI----T-HLHTDNGANFTS 124 (210)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEESS-CCHHHHHHHHHHHHTTSCC----S-EEEECCCTTTSS
T ss_pred CeEeEeecccCCe-----EEEEEEEcCCC-cEEEEEeCC-cchHHHHHHHHHHHHHcCC----C-EEEeCCCchhhH
Confidence 3678998888543 35566677766 666665544 6777766666655555542 3 499999886543
No 12
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=29.42 E-value=1.4e+02 Score=25.15 Aligned_cols=69 Identities=9% Similarity=-0.002 Sum_probs=42.8
Q ss_pred eeeeeec-eeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHH
Q 046610 316 MLLTVDG-WEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDE 392 (411)
Q Consensus 316 ~vl~iD~-t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~ 392 (411)
.++.+|- +++... +|..+.++.+|..-+. .+++.+ ...+.+...-+|+.+ +.. +.|.+|.||+.....+
T Consensus 14 ~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l~~~---~~~--g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 14 DKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSLNVL---TSI--AIPRVIHSDQGAAFTS 83 (200)
T ss_dssp SEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHHHHH---TTT--CCCSEEEECSCHHHHS
T ss_pred cEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHHHHH---HHh--CCCcEEEecCCcceeh
Confidence 3678886 454433 5667777777777554 456665 666666654444333 322 2457899999987654
No 13
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=29.05 E-value=90 Score=27.59 Aligned_cols=66 Identities=21% Similarity=0.167 Sum_probs=39.3
Q ss_pred eeeeeeceeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHHH
Q 046610 316 MLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDEA 393 (411)
Q Consensus 316 ~vl~iD~t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~A 393 (411)
.++.+|.|+..++ .+++++ |..-+ +++|+.+-. ++.....-++..+...++ +.+|.||+.....+.
T Consensus 10 ~~w~~D~t~~~g~---~~l~~v--D~~Sr-~i~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~i~sDnG~eF~s~ 75 (239)
T 1ex4_A 10 GIWQLDCTHLEGK---VILVAV--HVASG-YIEAEVIPA-ETGQETAYFLLKLAGRWP-----VKTIHTDNGSNFTGA 75 (239)
T ss_dssp GEEEEEEEEETTE---EEEEEE--CTTTC-CEEEECCSS-SSTTHHHHHHHHHHHHSC-----CCEEEECCCHHHHCH
T ss_pred CEEEEeccccCCe---EEEEEE--ECCCC-eEEEEEeCC-CCHHHHHHHHHHHHHhcC-----CcEEEecCcHHHHHH
Confidence 4788999998332 244444 55444 456775554 455444444444433332 378999999987543
No 14
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=27.65 E-value=1.8e+02 Score=23.23 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=39.3
Q ss_pred eeeeeeceeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHH
Q 046610 316 MLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGI 390 (411)
Q Consensus 316 ~vl~iD~t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL 390 (411)
.++.+|.++. +|. +.++.+|..-+ +.+++.+ ...+.+.+.-++..+...++ +.+|.+|+....
T Consensus 10 ~~w~~D~~~~----~g~-~~l~~iD~~Sr-~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~i~sDnG~~f 72 (164)
T 1c6v_A 10 GTWQMDCTHL----EGK-IVIVAVHVASG-FIEAEVI-PQETGRQTALFLLKLAGRWP-----ITHLHTDNGANF 72 (164)
T ss_dssp TEEEEEEEEE----TTE-EEEEEECTTSC-CEEEEEC-SSCSHHHHHHHHHHHHTTSC-----CCEEECCCCSST
T ss_pred CEEEEeeccc----CCE-EEEEEEEccCC-EEEEEEc-CCCchHHHHHHHHHHHHhcC-----CCEEEeCCchhh
Confidence 4688999988 333 33334777655 4566654 45666666655555544443 378999998755
No 15
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=26.90 E-value=66 Score=32.31 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=42.4
Q ss_pred CEEEeeeeeecc--cchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHHHHHHhCCccccccccccc
Q 046610 344 VVLPVAFCEVQE--ENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDEAVEEFLPYAVYRQCCFSL 410 (411)
Q Consensus 344 ~~~~lAfalv~~--E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~Ai~~vfP~a~h~~C~~Hi 410 (411)
+..+|+|.-++. .+.++..-.+..+.+.++......+.++||....+..|+.. ..|..|..|+
T Consensus 130 ~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~----~~~i~C~~H~ 194 (534)
T 2bw3_A 130 RDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLAN----NIRINCSSHL 194 (534)
T ss_dssp EEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTT----SEEEECHHHH
T ss_pred EEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhc----CcccccHHHH
Confidence 345677766663 56677766666666655544312367899999988877764 3588999885
No 16
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=24.58 E-value=2e+02 Score=24.58 Aligned_cols=66 Identities=12% Similarity=-0.003 Sum_probs=42.6
Q ss_pred eeeeeeceeeccCCCCceEEEEEecCCCCEEEeeeeeecccchhhHHHHHHHHHhhcCCCCCCcEEEEccCchHHHHH
Q 046610 316 MLLTVDGWEIDGPYKSVMLIAVCRDRNDVVLPVAFCEVQEENLDSWAFFLKNVNDGLRLERGKGLCILGDGDNGIDEA 393 (411)
Q Consensus 316 ~vl~iD~t~~~~~y~g~ll~avg~d~~~~~~~lAfalv~~E~~e~w~WfL~~l~~~l~~~~~~~~~iisDr~~gL~~A 393 (411)
.++.+|.|+..++ +.++-+|..-+.. .++.+ ..++.....-+|..+....+ |.+|.||+.....++
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g-----p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAERV-KGETGQEFRVQTMKWYAMFA-----PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SCCCHHHHHHHHHHHHHHHC-----CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEEe-CCCCHHHHHHHHHHHHHHhC-----CcEEEeCCCchhhhH
Confidence 4677898876433 5566667776655 55554 55666665556655555454 368999999887643
Done!