Query 046612
Match_columns 223
No_of_seqs 208 out of 1348
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:38:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 2E-72 4.2E-77 512.5 22.3 222 2-223 77-298 (524)
2 PLN02998 beta-glucosidase 100.0 3.3E-67 7.2E-72 486.5 21.9 216 6-223 72-288 (497)
3 PLN02849 beta-glucosidase 100.0 6.1E-67 1.3E-71 485.3 22.6 217 5-223 68-284 (503)
4 PLN02814 beta-glucosidase 100.0 1.3E-66 2.9E-71 483.1 22.8 217 4-223 65-282 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 1.7E-65 3.8E-70 463.5 20.9 205 3-222 46-250 (460)
6 PRK13511 6-phospho-beta-galact 100.0 9.3E-65 2E-69 468.7 22.0 200 7-223 45-245 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 1.5E-64 3.3E-69 466.6 22.5 200 7-223 44-244 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 1.1E-63 2.5E-68 461.7 22.1 197 7-218 64-262 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 2.9E-63 6.3E-68 458.8 22.1 198 7-219 58-262 (476)
10 PRK15014 6-phospho-beta-glucos 100.0 1.2E-61 2.5E-66 448.0 23.2 197 7-218 60-263 (477)
11 PF00232 Glyco_hydro_1: Glycos 100.0 2.4E-62 5.1E-67 451.8 16.8 206 2-223 44-250 (455)
12 PRK09852 cryptic 6-phospho-bet 100.0 9.6E-61 2.1E-65 441.4 22.1 196 7-217 62-259 (474)
13 TIGR03356 BGL beta-galactosida 100.0 4.1E-60 8.9E-65 433.4 22.1 203 4-223 42-244 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.6 1.2E-14 2.6E-19 131.3 9.1 108 16-129 10-140 (374)
15 PF00150 Cellulase: Cellulase 99.6 2.5E-14 5.5E-19 122.6 10.4 110 17-131 22-135 (281)
16 smart00633 Glyco_10 Glycosyl h 99.1 5.2E-10 1.1E-14 96.1 8.6 84 37-130 1-86 (254)
17 COG1874 LacA Beta-galactosidas 98.9 6.6E-09 1.4E-13 99.6 7.9 117 18-140 32-175 (673)
18 COG2730 BglC Endoglucanase [Ca 98.7 1E-07 2.3E-12 87.3 10.2 118 12-129 64-193 (407)
19 PF01229 Glyco_hydro_39: Glyco 98.6 2.6E-07 5.6E-12 86.5 9.7 106 18-130 41-168 (486)
20 PF01301 Glyco_hydro_35: Glyco 98.1 1.4E-05 3.1E-10 71.0 9.5 109 17-128 25-151 (319)
21 PF00331 Glyco_hydro_10: Glyco 98.0 2.2E-05 4.8E-10 69.8 8.6 103 21-130 26-137 (320)
22 PLN03059 beta-galactosidase; P 97.9 0.00012 2.5E-09 72.1 10.7 99 12-114 50-165 (840)
23 PF07745 Glyco_hydro_53: Glyco 97.8 0.00095 2.1E-08 59.7 14.7 142 18-196 26-177 (332)
24 PF13204 DUF4038: Protein of u 97.6 0.00061 1.3E-08 59.8 11.1 102 21-127 35-156 (289)
25 COG3693 XynA Beta-1,4-xylanase 97.6 0.00019 4E-09 63.4 7.1 85 37-129 67-153 (345)
26 PF14587 Glyco_hydr_30_2: O-Gl 97.5 0.00022 4.7E-09 64.6 6.7 102 27-129 58-185 (384)
27 PF02836 Glyco_hydro_2_C: Glyc 97.4 0.0011 2.5E-08 58.0 10.1 94 14-128 34-133 (298)
28 PF01373 Glyco_hydro_14: Glyco 97.4 0.00021 4.6E-09 65.0 4.7 99 15-118 15-144 (402)
29 PLN02803 beta-amylase 97.3 0.001 2.3E-08 62.2 8.4 97 17-118 108-243 (548)
30 PRK10150 beta-D-glucuronidase; 97.3 0.0015 3.2E-08 62.9 9.8 93 17-128 314-419 (604)
31 PLN02161 beta-amylase 97.3 0.0012 2.6E-08 61.5 8.5 102 12-118 113-253 (531)
32 PLN00197 beta-amylase; Provisi 97.2 0.0014 3.1E-08 61.5 8.5 97 17-118 128-263 (573)
33 PLN02801 beta-amylase 97.1 0.003 6.5E-08 58.9 9.6 97 17-118 38-173 (517)
34 PLN02705 beta-amylase 97.0 0.0049 1.1E-07 58.6 9.4 97 16-117 268-403 (681)
35 PLN02905 beta-amylase 96.9 0.005 1.1E-07 58.7 9.1 100 13-117 283-421 (702)
36 KOG0496 Beta-galactosidase [Ca 96.9 0.0067 1.5E-07 58.1 9.7 91 18-112 51-153 (649)
37 PF14488 DUF4434: Domain of un 96.9 0.011 2.5E-07 47.7 9.8 103 17-128 21-131 (166)
38 PRK09525 lacZ beta-D-galactosi 96.4 0.021 4.4E-07 58.4 10.2 94 14-128 369-464 (1027)
39 PRK10340 ebgA cryptic beta-D-g 96.1 0.042 9.1E-07 56.2 10.1 92 15-128 354-451 (1021)
40 COG3250 LacZ Beta-galactosidas 95.8 0.07 1.5E-06 53.1 10.1 91 12-129 317-409 (808)
41 COG3934 Endo-beta-mannanase [C 94.7 0.02 4.3E-07 53.3 2.4 109 18-129 28-150 (587)
42 COG3664 XynB Beta-xylosidase [ 94.5 0.062 1.4E-06 49.0 4.9 99 26-131 15-118 (428)
43 COG3867 Arabinogalactan endo-1 93.9 3 6.5E-05 37.1 13.8 103 19-128 66-182 (403)
44 PF03198 Glyco_hydro_72: Gluca 93.0 0.62 1.3E-05 41.4 8.4 48 17-80 54-101 (314)
45 PF02638 DUF187: Glycosyl hydr 92.8 6.5 0.00014 34.8 15.2 99 17-115 20-154 (311)
46 smart00642 Aamy Alpha-amylase 91.7 0.64 1.4E-05 37.4 6.4 67 13-79 16-91 (166)
47 PLN02361 alpha-amylase 88.2 1.2 2.6E-05 41.0 6.0 64 13-78 26-96 (401)
48 PF07488 Glyco_hydro_67M: Glyc 88.1 4.8 0.0001 35.7 9.3 87 15-116 56-150 (328)
49 PRK05402 glycogen branching en 87.5 4.1 8.8E-05 40.4 9.6 97 19-115 268-397 (726)
50 PF00128 Alpha-amylase: Alpha 86.8 1.5 3.3E-05 37.3 5.5 58 19-79 7-73 (316)
51 PLN00196 alpha-amylase; Provis 86.6 1.4 3E-05 41.0 5.4 63 14-78 42-112 (428)
52 PRK12313 glycogen branching en 86.5 4.7 0.0001 39.3 9.3 90 18-115 172-302 (633)
53 cd07945 DRE_TIM_CMS Leptospira 86.4 2.3 4.9E-05 37.2 6.4 67 17-84 75-141 (280)
54 PF14871 GHL6: Hypothetical gl 86.3 3.4 7.4E-05 32.0 6.8 54 20-79 4-65 (132)
55 KOG2233 Alpha-N-acetylglucosam 85.5 5.4 0.00012 37.7 8.6 113 15-127 77-248 (666)
56 cd06592 GH31_glucosidase_KIAA1 84.5 8.6 0.00019 33.8 9.3 105 19-128 33-167 (303)
57 COG3589 Uncharacterized conser 84.5 5.2 0.00011 36.0 7.7 69 22-106 22-90 (360)
58 PRK05799 coproporphyrinogen II 84.4 2.9 6.3E-05 37.7 6.4 104 17-138 97-203 (374)
59 TIGR02402 trehalose_TreZ malto 84.2 7 0.00015 37.4 9.1 91 18-115 113-237 (542)
60 cd03174 DRE_TIM_metallolyase D 82.2 4.7 0.0001 34.1 6.5 61 19-80 77-137 (265)
61 PRK09441 cytoplasmic alpha-amy 82.0 2.4 5.3E-05 39.7 5.1 66 14-79 20-102 (479)
62 TIGR01515 branching_enzym alph 81.9 11 0.00024 36.6 9.6 95 19-115 159-288 (613)
63 cd07939 DRE_TIM_NifV Streptomy 81.7 2.3 5.1E-05 36.4 4.4 61 18-79 71-131 (259)
64 TIGR01210 conserved hypothetic 81.5 11 0.00023 33.5 8.7 109 19-142 117-229 (313)
65 TIGR02403 trehalose_treC alpha 81.4 2.6 5.7E-05 40.2 5.1 63 13-79 24-96 (543)
66 PF12876 Cellulase-like: Sugar 81.3 0.82 1.8E-05 32.6 1.3 19 110-128 1-22 (88)
67 PRK05474 xylose isomerase; Pro 81.3 47 0.001 31.0 13.4 88 21-117 84-181 (437)
68 TIGR02630 xylose_isom_A xylose 80.9 48 0.001 30.8 13.6 68 22-98 84-156 (434)
69 cd06543 GH18_PF-ChiA-like PF-C 80.7 10 0.00023 33.3 8.3 58 23-82 19-78 (294)
70 PLN02784 alpha-amylase 80.6 4.2 9.2E-05 41.0 6.3 64 13-78 518-588 (894)
71 PLN02746 hydroxymethylglutaryl 80.4 5.8 0.00013 35.8 6.7 62 17-79 122-183 (347)
72 PRK05692 hydroxymethylglutaryl 80.3 7.2 0.00016 34.2 7.1 62 17-79 80-141 (287)
73 PRK10933 trehalose-6-phosphate 80.2 3 6.4E-05 40.0 5.0 61 15-79 32-102 (551)
74 PRK14705 glycogen branching en 79.8 12 0.00027 39.3 9.5 93 22-115 772-897 (1224)
75 PF10566 Glyco_hydro_97: Glyco 79.6 11 0.00024 32.9 8.0 102 11-113 27-149 (273)
76 cd07948 DRE_TIM_HCS Saccharomy 79.5 3.6 7.7E-05 35.6 4.8 61 18-79 73-133 (262)
77 PRK09505 malS alpha-amylase; R 78.9 4 8.8E-05 40.2 5.5 62 18-79 232-313 (683)
78 PRK12581 oxaloacetate decarbox 78.6 8.7 0.00019 36.2 7.4 56 14-84 98-158 (468)
79 COG1523 PulA Type II secretory 78.5 4.7 0.0001 39.8 5.8 58 22-79 206-286 (697)
80 PRK09058 coproporphyrinogen II 78.5 9.9 0.00021 35.4 7.8 106 17-141 161-270 (449)
81 PRK10785 maltodextrin glucosid 78.4 4.4 9.6E-05 39.2 5.6 57 18-79 181-247 (598)
82 PRK14041 oxaloacetate decarbox 77.9 9.1 0.0002 36.0 7.3 56 14-84 88-148 (467)
83 PRK14040 oxaloacetate decarbox 77.3 10 0.00022 36.8 7.7 51 14-79 90-145 (593)
84 PRK03705 glycogen debranching 76.7 7 0.00015 38.4 6.4 55 22-79 185-263 (658)
85 PRK14706 glycogen branching en 76.6 14 0.00031 36.1 8.6 90 23-115 175-299 (639)
86 TIGR02090 LEU1_arch isopropylm 76.6 4.2 9E-05 36.9 4.6 107 17-129 72-197 (363)
87 TIGR02456 treS_nterm trehalose 76.1 4.4 9.5E-05 38.6 4.8 59 17-79 29-97 (539)
88 TIGR02660 nifV_homocitr homoci 75.8 9.8 0.00021 34.4 6.8 107 18-129 74-198 (365)
89 PLN02447 1,4-alpha-glucan-bran 75.6 7 0.00015 39.0 6.1 96 20-115 255-383 (758)
90 TIGR00433 bioB biotin syntheta 75.3 9.6 0.00021 32.9 6.4 57 17-78 121-178 (296)
91 PRK11858 aksA trans-homoaconit 75.3 11 0.00025 34.2 7.1 60 19-79 78-137 (378)
92 PF02065 Melibiase: Melibiase; 74.6 39 0.00085 31.1 10.4 89 19-115 61-183 (394)
93 PRK12331 oxaloacetate decarbox 74.1 14 0.0003 34.6 7.4 51 19-84 99-149 (448)
94 cd07944 DRE_TIM_HOA_like 4-hyd 73.1 16 0.00035 31.6 7.2 47 19-80 85-131 (266)
95 cd07937 DRE_TIM_PC_TC_5S Pyruv 72.3 27 0.00059 30.2 8.5 46 18-78 93-138 (275)
96 PRK12858 tagatose 1,6-diphosph 72.2 18 0.00039 32.6 7.5 52 22-78 112-163 (340)
97 cd07938 DRE_TIM_HMGL 3-hydroxy 71.6 18 0.0004 31.4 7.2 66 18-84 75-141 (274)
98 cd06598 GH31_transferase_CtsZ 71.5 47 0.001 29.3 9.9 109 19-130 27-168 (317)
99 PRK14511 maltooligosyl trehalo 71.4 9.6 0.00021 38.6 6.0 55 17-79 21-90 (879)
100 PF03659 Glyco_hydro_71: Glyco 70.6 43 0.00094 30.7 9.7 51 17-79 18-68 (386)
101 TIGR03234 OH-pyruv-isom hydrox 70.5 22 0.00048 29.8 7.4 66 16-84 84-150 (254)
102 TIGR03581 EF_0839 conserved hy 70.3 20 0.00043 30.4 6.7 73 16-103 135-230 (236)
103 PRK05628 coproporphyrinogen II 69.9 33 0.00072 30.9 8.8 103 17-138 106-212 (375)
104 TIGR03471 HpnJ hopanoid biosyn 69.8 20 0.00044 33.4 7.6 61 18-84 286-348 (472)
105 TIGR02401 trehalose_TreY malto 69.8 11 0.00024 38.0 6.0 63 17-79 17-86 (825)
106 cd06565 GH20_GcnA-like Glycosy 69.4 26 0.00056 30.8 7.8 67 9-79 7-81 (301)
107 PF05089 NAGLU: Alpha-N-acetyl 69.3 11 0.00025 33.8 5.5 111 15-127 18-184 (333)
108 PRK14510 putative bifunctional 68.8 9.1 0.0002 40.3 5.4 60 20-79 191-268 (1221)
109 TIGR01211 ELP3 histone acetylt 68.8 23 0.0005 33.8 7.8 107 18-142 205-316 (522)
110 cd02742 GH20_hexosaminidase Be 68.7 18 0.0004 31.7 6.7 71 9-85 7-96 (303)
111 PF03511 Fanconi_A: Fanconi an 68.1 4.5 9.7E-05 27.2 2.0 39 40-82 19-57 (64)
112 PF12891 Glyco_hydro_44: Glyco 67.9 19 0.0004 30.9 6.3 113 58-197 24-182 (239)
113 PF10566 Glyco_hydro_97: Glyco 67.9 10 0.00023 33.1 4.9 68 18-98 108-175 (273)
114 PRK08446 coproporphyrinogen II 67.8 36 0.00078 30.5 8.5 60 18-84 97-160 (350)
115 cd06593 GH31_xylosidase_YicI Y 67.8 44 0.00096 29.2 9.0 105 18-127 26-160 (308)
116 PRK14507 putative bifunctional 67.8 16 0.00034 39.7 7.0 57 18-82 760-833 (1693)
117 COG3534 AbfA Alpha-L-arabinofu 67.4 51 0.0011 31.0 9.4 95 18-127 50-174 (501)
118 TIGR02100 glgX_debranch glycog 67.2 12 0.00025 37.0 5.6 58 22-79 190-266 (688)
119 PRK12568 glycogen branching en 67.1 14 0.00029 36.9 6.0 93 22-115 276-401 (730)
120 PRK09936 hypothetical protein; 66.9 59 0.0013 28.7 9.3 98 18-128 40-145 (296)
121 COG1501 Alpha-glucosidases, fa 66.5 20 0.00044 35.9 7.1 102 27-133 293-422 (772)
122 PRK08599 coproporphyrinogen II 66.4 37 0.00081 30.6 8.4 97 17-131 98-197 (377)
123 cd06568 GH20_SpHex_like A subg 66.2 29 0.00064 30.9 7.6 72 8-85 8-99 (329)
124 cd07940 DRE_TIM_IPMS 2-isoprop 65.4 26 0.00056 30.1 6.9 61 18-79 71-135 (268)
125 PF04914 DltD_C: DltD C-termin 65.1 24 0.00052 27.3 5.9 57 57-117 35-91 (130)
126 TIGR01108 oadA oxaloacetate de 64.9 28 0.00061 33.7 7.6 92 19-129 94-205 (582)
127 PRK07379 coproporphyrinogen II 64.8 42 0.00092 30.7 8.5 106 17-140 113-221 (400)
128 PRK08208 coproporphyrinogen II 64.6 28 0.0006 32.2 7.3 62 17-84 139-203 (430)
129 COG0366 AmyA Glycosidases [Car 64.1 9.8 0.00021 35.0 4.3 59 20-78 33-97 (505)
130 PLN02960 alpha-amylase 64.1 17 0.00036 36.9 6.0 99 15-115 415-549 (897)
131 COG5520 O-Glycosyl hydrolase [ 63.9 24 0.00052 32.2 6.4 94 27-130 77-181 (433)
132 PRK07094 biotin synthase; Prov 63.8 13 0.00029 32.6 4.9 62 17-84 127-190 (323)
133 cd06601 GH31_lyase_GLase GLase 63.4 36 0.00078 30.5 7.6 106 22-133 30-140 (332)
134 PRK05660 HemN family oxidoredu 62.7 50 0.0011 30.0 8.5 94 17-128 105-201 (378)
135 PRK12399 tagatose 1,6-diphosph 62.6 49 0.0011 29.6 8.1 58 22-84 111-168 (324)
136 PF02055 Glyco_hydro_30: O-Gly 62.6 13 0.00029 35.2 4.9 103 26-130 110-236 (496)
137 PRK12677 xylose isomerase; Pro 62.4 1.3E+02 0.0027 27.6 11.5 72 17-97 32-104 (384)
138 cd06545 GH18_3CO4_chitinase Th 62.4 30 0.00064 29.3 6.6 79 35-116 26-130 (253)
139 TIGR03217 4OH_2_O_val_ald 4-hy 62.1 76 0.0016 28.4 9.4 94 18-129 89-201 (333)
140 TIGR01212 radical SAM protein, 62.0 25 0.00054 30.9 6.2 72 58-142 163-234 (302)
141 TIGR02104 pulA_typeI pullulana 61.8 22 0.00047 34.5 6.3 23 57-79 228-250 (605)
142 cd06542 GH18_EndoS-like Endo-b 61.3 36 0.00079 28.7 7.0 26 57-82 50-75 (255)
143 COG0821 gcpE 1-hydroxy-2-methy 60.8 1E+02 0.0022 27.9 9.7 83 11-109 79-161 (361)
144 cd07941 DRE_TIM_LeuA3 Desulfob 60.5 16 0.00035 31.6 4.7 62 19-81 81-142 (273)
145 TIGR02102 pullulan_Gpos pullul 59.1 28 0.00062 36.3 6.8 23 57-79 554-576 (1111)
146 cd00019 AP2Ec AP endonuclease 59.0 93 0.002 26.4 9.2 54 16-76 10-64 (279)
147 PRK05904 coproporphyrinogen II 59.0 25 0.00054 31.7 5.8 62 18-85 102-166 (353)
148 PF00682 HMGL-like: HMGL-like 59.0 28 0.0006 29.0 5.8 80 19-113 66-149 (237)
149 cd06570 GH20_chitobiase-like_1 58.9 45 0.00098 29.6 7.3 71 9-85 9-92 (311)
150 PRK09249 coproporphyrinogen II 58.8 46 0.00099 31.0 7.7 62 17-84 149-213 (453)
151 PLN02389 biotin synthase 58.3 37 0.0008 31.0 6.8 58 17-79 176-234 (379)
152 cd06603 GH31_GANC_GANAB_alpha 58.0 40 0.00087 30.0 7.0 108 18-131 26-167 (339)
153 cd02803 OYE_like_FMN_family Ol 57.8 1.3E+02 0.0028 26.3 10.1 135 50-209 69-229 (327)
154 PRK06294 coproporphyrinogen II 57.2 78 0.0017 28.6 8.8 95 18-130 102-199 (370)
155 TIGR00539 hemN_rel putative ox 57.2 66 0.0014 28.8 8.3 92 17-128 98-194 (360)
156 PRK01060 endonuclease IV; Prov 57.2 77 0.0017 26.9 8.4 53 15-74 11-63 (281)
157 cd07943 DRE_TIM_HOA 4-hydroxy- 57.0 29 0.00064 29.6 5.7 47 18-79 87-133 (263)
158 cd06602 GH31_MGAM_SI_GAA This 56.8 55 0.0012 29.3 7.6 106 19-129 27-168 (339)
159 TIGR00538 hemN oxygen-independ 56.6 25 0.00054 32.7 5.6 63 17-85 149-214 (455)
160 PRK04161 tagatose 1,6-diphosph 56.1 27 0.0006 31.3 5.4 59 21-84 112-170 (329)
161 PF01261 AP_endonuc_2: Xylose 55.7 44 0.00094 26.4 6.3 62 15-77 70-131 (213)
162 PRK08195 4-hyroxy-2-oxovalerat 55.5 31 0.00066 31.0 5.7 94 18-129 90-202 (337)
163 PRK09856 fructoselysine 3-epim 55.3 22 0.00047 30.2 4.6 58 17-77 91-148 (275)
164 cd06600 GH31_MGAM-like This fa 55.0 98 0.0021 27.3 8.9 106 20-130 28-164 (317)
165 TIGR00542 hxl6Piso_put hexulos 54.6 26 0.00057 29.9 5.0 59 17-78 95-153 (279)
166 PRK07106 5-aminoimidazole-4-ca 54.4 21 0.00045 32.7 4.4 54 6-77 330-383 (390)
167 PRK13210 putative L-xylulose 5 54.3 1.3E+02 0.0028 25.4 9.3 54 17-76 17-70 (284)
168 TIGR01232 lacD tagatose 1,6-di 54.3 72 0.0016 28.6 7.7 59 21-84 111-169 (325)
169 cd02874 GH18_CFLE_spore_hydrol 54.1 41 0.00088 29.4 6.3 95 14-115 7-134 (313)
170 cd07947 DRE_TIM_Re_CS Clostrid 53.9 23 0.00049 31.0 4.6 63 15-78 73-135 (279)
171 COG2100 Predicted Fe-S oxidore 53.4 61 0.0013 29.4 7.0 84 12-111 197-284 (414)
172 COG0138 PurH AICAR transformyl 53.3 24 0.00053 33.3 4.8 53 7-77 456-508 (515)
173 PRK13209 L-xylulose 5-phosphat 53.2 1.4E+02 0.0031 25.3 10.1 53 17-75 22-74 (283)
174 cd06591 GH31_xylosidase_XylS X 52.4 1.2E+02 0.0025 26.8 8.9 110 19-131 27-164 (319)
175 TIGR00423 radical SAM domain p 51.9 97 0.0021 27.1 8.3 58 18-84 106-170 (309)
176 smart00729 Elp3 Elongator prot 51.9 1.1E+02 0.0023 23.9 8.0 59 15-78 96-157 (216)
177 PRK13347 coproporphyrinogen II 51.3 35 0.00076 31.7 5.6 63 17-85 150-215 (453)
178 TIGR00542 hxl6Piso_put hexulos 51.2 1.5E+02 0.0033 25.1 9.9 54 16-75 16-69 (279)
179 cd06599 GH31_glycosidase_Aec37 51.0 90 0.002 27.5 8.0 110 19-129 32-171 (317)
180 TIGR00419 tim triosephosphate 50.2 50 0.0011 27.6 5.8 44 22-78 74-117 (205)
181 PRK00366 ispG 4-hydroxy-3-meth 49.7 1.3E+02 0.0029 27.4 8.7 72 26-110 98-169 (360)
182 TIGR00612 ispG_gcpE 1-hydroxy- 49.0 82 0.0018 28.5 7.2 53 58-110 108-160 (346)
183 PF02057 Glyco_hydro_59: Glyco 48.6 31 0.00067 33.9 4.9 117 7-128 51-184 (669)
184 PRK08508 biotin synthase; Prov 48.6 44 0.00096 28.9 5.5 57 17-78 100-157 (279)
185 PRK13210 putative L-xylulose 5 48.6 34 0.00073 29.1 4.8 57 18-78 96-153 (284)
186 cd08576 GDPD_like_SMaseD_PLD G 48.4 1.1E+02 0.0025 26.6 7.9 106 18-129 9-126 (265)
187 PTZ00445 p36-lilke protein; Pr 48.4 44 0.00096 28.3 5.2 55 22-79 35-99 (219)
188 smart00052 EAL Putative diguan 47.5 63 0.0014 26.2 6.1 62 9-77 148-209 (241)
189 KOG0470 1,4-alpha-glucan branc 46.8 30 0.00066 34.3 4.5 65 15-80 253-333 (757)
190 PRK09856 fructoselysine 3-epim 46.7 1.2E+02 0.0026 25.5 8.0 52 17-76 14-65 (275)
191 PRK12755 phospho-2-dehydro-3-d 46.4 83 0.0018 28.6 7.0 73 17-89 69-156 (353)
192 KOG1065 Maltase glucoamylase a 46.1 1.2E+02 0.0026 30.6 8.5 105 20-132 315-454 (805)
193 PRK00881 purH bifunctional pho 46.0 45 0.00098 31.8 5.4 54 6-77 453-506 (513)
194 cd06562 GH20_HexA_HexB-like Be 46.0 68 0.0015 28.8 6.5 72 8-85 8-94 (348)
195 cd06564 GH20_DspB_LnbB-like Gl 45.9 2.1E+02 0.0046 25.2 10.4 72 9-86 8-107 (326)
196 TIGR02631 xylA_Arthro xylose i 45.9 2.4E+02 0.0051 25.8 11.3 78 11-97 27-105 (382)
197 PRK09389 (R)-citramalate synth 45.5 37 0.0008 32.1 4.8 64 16-80 73-136 (488)
198 PRK09282 pyruvate carboxylase 44.8 1.1E+02 0.0024 29.8 8.0 47 18-79 98-144 (592)
199 TIGR00355 purH phosphoribosyla 44.6 37 0.0008 32.3 4.6 54 6-77 451-504 (511)
200 PRK08207 coproporphyrinogen II 44.2 27 0.00058 33.1 3.7 61 18-84 268-331 (488)
201 PRK06256 biotin synthase; Vali 44.2 46 0.001 29.4 5.1 57 17-78 150-207 (336)
202 TIGR02026 BchE magnesium-proto 44.0 48 0.001 31.3 5.4 61 18-84 286-348 (497)
203 cd01948 EAL EAL domain. This d 43.8 67 0.0015 26.0 5.7 64 7-77 145-208 (240)
204 PRK09997 hydroxypyruvate isome 43.7 1.3E+02 0.0027 25.3 7.5 64 18-84 87-151 (258)
205 cd06563 GH20_chitobiase-like T 43.2 82 0.0018 28.3 6.6 68 8-78 8-106 (357)
206 cd02871 GH18_chitinase_D-like 43.2 84 0.0018 27.6 6.5 25 58-82 60-84 (312)
207 PRK13398 3-deoxy-7-phosphohept 42.8 97 0.0021 26.9 6.7 71 12-87 37-107 (266)
208 PF04055 Radical_SAM: Radical 42.7 38 0.00083 25.3 3.8 52 19-74 90-143 (166)
209 PLN02923 xylose isomerase 42.7 3E+02 0.0064 26.0 14.0 127 21-182 128-265 (478)
210 TIGR02635 RhaI_grampos L-rhamn 42.0 1.5E+02 0.0032 27.2 8.0 86 19-121 43-136 (378)
211 PTZ00445 p36-lilke protein; Pr 41.8 54 0.0012 27.7 4.7 52 58-112 29-89 (219)
212 PRK12822 phospho-2-dehydro-3-d 41.8 58 0.0013 29.6 5.2 72 18-89 69-155 (356)
213 PF07071 DUF1341: Protein of u 41.7 93 0.002 26.2 6.0 45 17-74 136-180 (218)
214 PRK10426 alpha-glucosidase; Pr 41.6 2.6E+02 0.0057 27.4 10.2 107 18-127 223-364 (635)
215 TIGR00674 dapA dihydrodipicoli 40.8 1.4E+02 0.003 25.7 7.5 67 49-129 13-79 (285)
216 PRK00042 tpiA triosephosphate 40.5 77 0.0017 27.2 5.7 49 22-79 79-127 (250)
217 TIGR03551 F420_cofH 7,8-dideme 40.4 89 0.0019 27.8 6.3 93 17-125 139-234 (343)
218 PRK00230 orotidine 5'-phosphat 40.1 48 0.001 27.9 4.3 61 10-85 7-67 (230)
219 TIGR01856 hisJ_fam histidinol 40.0 1E+02 0.0023 26.1 6.4 60 59-120 16-78 (253)
220 cd00950 DHDPS Dihydrodipicolin 39.9 1.4E+02 0.0031 25.5 7.4 67 49-129 15-81 (284)
221 PRK12330 oxaloacetate decarbox 39.9 1.4E+02 0.003 28.5 7.6 28 15-42 91-123 (499)
222 PRK13209 L-xylulose 5-phosphat 39.9 52 0.0011 28.0 4.6 55 17-78 100-158 (283)
223 PRK05692 hydroxymethylglutaryl 39.7 2.2E+02 0.0047 24.9 8.5 91 18-129 122-212 (287)
224 PF11790 Glyco_hydro_cc: Glyco 38.4 27 0.00059 29.5 2.5 17 115-131 63-79 (239)
225 PRK06582 coproporphyrinogen II 38.3 1.9E+02 0.004 26.4 8.2 95 18-130 110-206 (390)
226 COG0296 GlgB 1,4-alpha-glucan 38.1 51 0.0011 32.3 4.6 58 19-82 168-240 (628)
227 cd01335 Radical_SAM Radical SA 38.0 50 0.0011 25.4 3.9 58 18-78 87-145 (204)
228 PRK11572 copper homeostasis pr 37.9 1.1E+02 0.0025 26.3 6.2 40 17-67 74-113 (248)
229 KOG2566 Beta-glucocerebrosidas 37.9 84 0.0018 29.2 5.6 79 55-135 174-266 (518)
230 PF04646 DUF604: Protein of un 37.8 14 0.00031 31.8 0.8 72 66-140 76-147 (255)
231 COG3623 SgaU Putative L-xylulo 37.8 59 0.0013 28.1 4.4 62 16-85 18-83 (287)
232 PRK09261 phospho-2-dehydro-3-d 37.4 70 0.0015 29.0 5.1 56 34-89 99-155 (349)
233 cd06604 GH31_glucosidase_II_Ma 37.2 2.5E+02 0.0053 24.9 8.6 105 19-130 27-163 (339)
234 PRK00125 pyrF orotidine 5'-pho 36.3 41 0.00088 29.5 3.4 32 54-85 69-100 (278)
235 PF13812 PPR_3: Pentatricopept 36.1 36 0.00078 18.5 2.1 15 60-74 20-34 (34)
236 PF13200 DUF4015: Putative gly 35.8 2E+02 0.0043 25.7 7.7 97 16-113 13-136 (316)
237 PLN02925 4-hydroxy-3-methylbut 35.7 1.4E+02 0.0031 29.7 7.1 54 56-110 204-261 (733)
238 PLN02429 triosephosphate isome 35.7 1E+02 0.0022 27.6 5.8 49 22-79 140-188 (315)
239 PRK09057 coproporphyrinogen II 35.4 1.1E+02 0.0023 27.8 6.1 62 17-85 102-166 (380)
240 PLN02891 IMP cyclohydrolase 35.2 57 0.0012 31.3 4.3 53 7-77 486-540 (547)
241 cd01990 Alpha_ANH_like_I This 35.1 2.1E+02 0.0046 22.9 7.3 69 12-82 31-106 (202)
242 cd04733 OYE_like_2_FMN Old yel 35.1 3.2E+02 0.007 24.2 11.8 40 40-81 63-105 (338)
243 COG0635 HemN Coproporphyrinoge 34.9 1.1E+02 0.0024 28.3 6.2 105 18-139 136-242 (416)
244 PRK09432 metF 5,10-methylenete 34.5 1.3E+02 0.0028 26.4 6.3 72 58-130 189-283 (296)
245 PRK15108 biotin synthase; Prov 34.5 1.3E+02 0.0029 26.9 6.5 47 23-79 86-132 (345)
246 PF00224 PK: Pyruvate kinase, 33.8 54 0.0012 29.5 3.8 22 19-40 17-38 (348)
247 TIGR01589 A_thal_3526 uncharac 33.3 56 0.0012 21.7 2.8 35 61-106 19-54 (57)
248 PRK03892 ribonuclease P protei 33.2 1.4E+02 0.003 25.2 5.8 90 21-113 119-215 (216)
249 TIGR01064 pyruv_kin pyruvate k 33.2 88 0.0019 29.5 5.3 21 19-39 16-36 (473)
250 PF01055 Glyco_hydro_31: Glyco 33.1 2.7E+02 0.0058 25.5 8.4 108 18-130 45-184 (441)
251 PF01171 ATP_bind_3: PP-loop f 33.0 51 0.0011 26.3 3.3 54 23-80 52-105 (182)
252 TIGR02455 TreS_stutzeri trehal 32.8 1.4E+02 0.003 29.6 6.6 56 22-79 80-151 (688)
253 PRK06739 pyruvate kinase; Vali 32.7 1.1E+02 0.0023 27.9 5.5 21 19-39 16-36 (352)
254 PF09713 A_thal_3526: Plant pr 32.5 38 0.00082 22.2 1.9 35 61-106 16-51 (54)
255 cd00408 DHDPS-like Dihydrodipi 32.1 2.5E+02 0.0054 23.9 7.6 67 49-129 12-78 (281)
256 PF02679 ComA: (2R)-phospho-3- 32.1 1.1E+02 0.0023 26.4 5.2 76 16-113 84-159 (244)
257 PRK14565 triosephosphate isome 31.8 1.4E+02 0.003 25.6 5.8 49 22-79 78-126 (237)
258 PRK12465 xylose isomerase; Pro 31.6 4.4E+02 0.0096 24.7 13.0 70 20-98 93-167 (445)
259 PF00563 EAL: EAL domain; Int 31.5 67 0.0015 26.0 3.8 61 10-78 150-210 (236)
260 cd03130 GATase1_CobB Type 1 gl 31.4 2.6E+02 0.0056 22.7 7.3 63 17-80 12-83 (198)
261 COG5016 Pyruvate/oxaloacetate 31.2 2.6E+02 0.0056 26.2 7.6 52 13-79 90-146 (472)
262 TIGR00587 nfo apurinic endonuc 31.1 2.2E+02 0.0047 24.4 7.1 56 18-80 13-68 (274)
263 cd00311 TIM Triosephosphate is 31.1 1.7E+02 0.0037 25.0 6.3 49 22-79 77-125 (242)
264 PLN02808 alpha-galactosidase 31.0 1.3E+02 0.0029 27.6 5.9 58 15-83 132-189 (386)
265 PF04551 GcpE: GcpE protein; 30.9 4.2E+02 0.009 24.2 8.9 56 19-88 34-90 (359)
266 PRK04302 triosephosphate isome 30.8 1.4E+02 0.003 24.8 5.7 45 22-79 78-122 (223)
267 PRK08898 coproporphyrinogen II 30.8 1.1E+02 0.0024 27.8 5.4 62 18-85 121-184 (394)
268 cd08577 PI-PLCc_GDPD_SF_unchar 30.4 92 0.002 26.3 4.5 46 34-84 162-207 (228)
269 PRK14042 pyruvate carboxylase 30.1 2.5E+02 0.0054 27.4 7.9 25 14-38 89-118 (596)
270 TIGR03849 arch_ComA phosphosul 29.9 1.6E+02 0.0035 25.2 5.9 76 16-113 71-146 (237)
271 TIGR02109 PQQ_syn_pqqE coenzym 29.8 2.5E+02 0.0055 24.8 7.5 62 11-76 87-150 (358)
272 PF05913 DUF871: Bacterial pro 29.8 98 0.0021 28.1 4.8 51 20-79 18-68 (357)
273 PRK03170 dihydrodipicolinate s 29.4 2.7E+02 0.0058 24.0 7.4 66 49-128 16-81 (292)
274 cd06595 GH31_xylosidase_XylS-l 29.4 2E+02 0.0044 24.9 6.6 107 22-130 31-163 (292)
275 KOG3975 Uncharacterized conser 29.1 57 0.0012 28.5 3.0 49 72-124 18-66 (301)
276 COG3623 SgaU Putative L-xylulo 28.9 2.4E+02 0.0051 24.5 6.6 100 22-130 60-162 (287)
277 cd06525 GH25_Lyc-like Lyc mura 28.7 3E+02 0.0065 21.9 8.3 90 19-122 11-124 (184)
278 PF06777 DUF1227: Protein of u 28.3 1.2E+02 0.0027 24.0 4.5 68 58-127 16-86 (146)
279 PLN02692 alpha-galactosidase 28.2 1.8E+02 0.0039 27.0 6.3 58 15-83 156-213 (412)
280 PRK12595 bifunctional 3-deoxy- 28.1 1.9E+02 0.0042 26.2 6.4 64 12-80 128-191 (360)
281 cd00927 Cyt_c_Oxidase_VIc Cyto 27.9 23 0.0005 24.5 0.3 19 12-30 46-66 (70)
282 COG2876 AroA 3-deoxy-D-arabino 27.8 3.3E+02 0.0071 24.0 7.3 79 11-110 54-132 (286)
283 cd06569 GH20_Sm-chitobiase-lik 27.7 2.3E+02 0.0049 26.5 7.0 72 8-85 12-121 (445)
284 PRK08208 coproporphyrinogen II 27.7 2.2E+02 0.0048 26.2 6.9 69 14-85 206-277 (430)
285 PLN03153 hypothetical protein; 27.7 67 0.0015 30.8 3.4 39 66-107 326-365 (537)
286 PF04028 DUF374: Domain of unk 27.5 2.1E+02 0.0046 19.7 5.7 40 23-78 27-66 (74)
287 smart00518 AP2Ec AP endonuclea 27.5 3.7E+02 0.008 22.5 8.9 51 18-75 12-62 (273)
288 PF08357 SEFIR: SEFIR domain; 27.4 73 0.0016 24.3 3.2 23 58-80 16-39 (150)
289 COG0095 LplA Lipoate-protein l 27.3 1.1E+02 0.0024 26.1 4.5 56 19-74 55-122 (248)
290 TIGR02127 pyrF_sub2 orotidine 27.3 89 0.0019 27.0 4.0 56 23-85 45-100 (261)
291 PLN02623 pyruvate kinase 27.2 83 0.0018 30.6 4.0 21 19-39 125-145 (581)
292 COG0149 TpiA Triosephosphate i 27.0 2.1E+02 0.0046 24.7 6.1 49 22-79 81-129 (251)
293 PRK10658 putative alpha-glucos 27.0 5.2E+02 0.011 25.6 9.6 101 22-127 289-419 (665)
294 PF01120 Alpha_L_fucos: Alpha- 26.9 1.3E+02 0.0028 26.9 5.1 59 22-82 97-162 (346)
295 TIGR03699 mena_SCO4550 menaqui 26.9 83 0.0018 27.9 3.8 53 18-78 142-201 (340)
296 TIGR02495 NrdG2 anaerobic ribo 26.9 1.5E+02 0.0033 23.5 5.1 56 19-78 102-160 (191)
297 PF03851 UvdE: UV-endonuclease 26.5 2.4E+02 0.0052 24.7 6.5 57 22-82 51-111 (275)
298 cd00019 AP2Ec AP endonuclease 26.3 87 0.0019 26.6 3.7 58 16-77 85-142 (279)
299 PRK13505 formate--tetrahydrofo 26.3 86 0.0019 30.3 3.9 31 54-84 355-385 (557)
300 PRK13347 coproporphyrinogen II 26.1 2.6E+02 0.0055 26.0 7.0 70 14-85 217-293 (453)
301 PF01740 STAS: STAS domain; I 26.1 1.1E+02 0.0024 22.1 3.8 30 50-79 59-88 (117)
302 cd02877 GH18_hevamine_XipI_cla 26.0 1.5E+02 0.0032 25.9 5.1 49 58-116 59-107 (280)
303 TIGR02432 lysidine_TilS_N tRNA 25.6 1.8E+02 0.004 22.9 5.4 59 23-82 52-110 (189)
304 PRK08445 hypothetical protein; 25.5 3E+02 0.0066 24.7 7.2 54 18-79 143-203 (348)
305 TIGR02883 spore_cwlD N-acetylm 25.5 3.1E+02 0.0067 22.0 6.7 60 23-84 37-96 (189)
306 TIGR01166 cbiO cobalt transpor 25.4 1.5E+02 0.0033 23.5 4.8 32 50-81 156-187 (190)
307 COG3916 LasI N-acyl-L-homoseri 25.4 1E+02 0.0022 25.9 3.8 41 38-80 100-146 (209)
308 cd04501 SGNH_hydrolase_like_4 25.3 3.2E+02 0.007 21.1 9.0 68 54-124 79-148 (183)
309 PF08821 CGGC: CGGC domain; I 25.3 2.8E+02 0.006 20.6 5.8 53 17-78 53-106 (107)
310 PF14606 Lipase_GDSL_3: GDSL-l 25.2 1.8E+02 0.0038 23.8 5.1 87 22-122 52-142 (178)
311 cd07396 MPP_Nbla03831 Homo sap 25.2 2E+02 0.0043 24.4 5.8 31 50-80 158-188 (267)
312 PF04007 DUF354: Protein of un 25.1 1E+02 0.0023 27.6 4.1 39 52-90 8-46 (335)
313 PF03129 HGTP_anticodon: Antic 25.1 1.2E+02 0.0026 21.0 3.7 27 53-79 11-37 (94)
314 cd06522 GH25_AtlA-like AtlA is 25.1 1.8E+02 0.0039 23.5 5.2 50 19-84 15-66 (192)
315 COG1533 SplB DNA repair photol 25.0 1.9E+02 0.0041 25.5 5.7 54 17-78 127-189 (297)
316 cd02932 OYE_YqiM_FMN Old yello 24.4 4.9E+02 0.011 22.9 12.5 33 50-82 69-101 (336)
317 PRK09058 coproporphyrinogen II 24.4 2.5E+02 0.0054 26.1 6.6 68 16-85 230-306 (449)
318 PF01136 Peptidase_U32: Peptid 24.4 1.2E+02 0.0026 25.0 4.2 43 21-71 161-203 (233)
319 PF14417 MEDS: MEDS: MEthanoge 24.4 2.2E+02 0.0047 23.0 5.6 55 18-83 107-163 (191)
320 PF11790 Glyco_hydro_cc: Glyco 24.3 2.5E+02 0.0054 23.6 6.1 22 100-123 150-171 (239)
321 cd01993 Alpha_ANH_like_II This 24.2 2.4E+02 0.0052 21.9 5.8 56 24-81 55-116 (185)
322 COG3661 AguA Alpha-glucuronida 24.2 6.3E+02 0.014 24.1 9.0 71 16-95 183-253 (684)
323 PF00728 Glyco_hydro_20: Glyco 24.2 97 0.0021 27.2 3.7 59 18-79 20-94 (351)
324 cd01821 Rhamnogalacturan_acety 23.9 2.7E+02 0.0059 21.9 6.1 56 55-116 91-147 (198)
325 cd01311 PDC_hydrolase 2-pyrone 23.9 1.9E+02 0.0042 24.4 5.4 49 19-79 83-131 (263)
326 TIGR02159 PA_CoA_Oxy4 phenylac 23.8 1.4E+02 0.0031 23.4 4.2 28 12-39 38-66 (146)
327 PRK00164 moaA molybdenum cofac 23.7 4.8E+02 0.01 22.7 8.1 53 18-75 107-162 (331)
328 KOG0259 Tyrosine aminotransfer 23.6 1.7E+02 0.0036 27.2 5.1 25 50-77 214-238 (447)
329 TIGR00539 hemN_rel putative ox 23.6 2.4E+02 0.0053 25.2 6.2 66 15-85 166-238 (360)
330 COG1060 ThiH Thiamine biosynth 23.4 4E+02 0.0088 24.3 7.6 84 15-116 157-246 (370)
331 PTZ00066 pyruvate kinase; Prov 23.4 1.1E+02 0.0025 29.2 4.1 22 18-39 52-73 (513)
332 PRK14566 triosephosphate isome 23.4 2.5E+02 0.0055 24.3 6.0 49 22-79 88-136 (260)
333 PF04551 GcpE: GcpE protein; 23.3 1.3E+02 0.0028 27.4 4.3 83 8-109 76-168 (359)
334 cd00598 GH18_chitinase-like Th 23.2 3.7E+02 0.008 21.3 6.8 52 60-115 51-104 (210)
335 COG3280 TreY Maltooligosyl tre 23.0 1.7E+02 0.0037 29.5 5.3 61 18-79 21-89 (889)
336 PRK09613 thiH thiamine biosynt 23.0 2.6E+02 0.0055 26.5 6.4 69 11-86 172-247 (469)
337 PRK15492 triosephosphate isome 23.0 2.7E+02 0.0058 24.1 6.1 49 22-79 87-135 (260)
338 cd02930 DCR_FMN 2,4-dienoyl-Co 22.9 5.5E+02 0.012 22.9 12.5 128 50-201 69-217 (353)
339 TIGR01235 pyruv_carbox pyruvat 22.9 3.6E+02 0.0077 28.6 7.9 23 14-36 618-645 (1143)
340 PRK09989 hypothetical protein; 22.9 1.7E+02 0.0038 24.5 4.9 56 18-76 87-142 (258)
341 KOG2900 Biotin synthase [Coenz 22.8 1.9E+02 0.0042 25.3 5.0 63 23-93 127-189 (380)
342 TIGR01306 GMP_reduct_2 guanosi 22.8 3.1E+02 0.0067 24.5 6.6 34 18-54 147-185 (321)
343 TIGR02351 thiH thiazole biosyn 22.7 2.9E+02 0.0063 24.9 6.5 98 16-128 159-260 (366)
344 PRK13397 3-deoxy-7-phosphohept 22.6 3.7E+02 0.008 23.2 6.8 64 12-80 25-88 (250)
345 cd01299 Met_dep_hydrolase_A Me 22.6 3.5E+02 0.0077 23.4 7.0 57 18-78 122-180 (342)
346 PLN02561 triosephosphate isome 22.6 3.1E+02 0.0066 23.7 6.3 49 22-79 81-129 (253)
347 COG3684 LacD Tagatose-1,6-bisp 22.5 1.6E+02 0.0034 25.9 4.5 56 21-82 116-171 (306)
348 cd07482 Peptidases_S8_Lantibio 22.5 3.8E+02 0.0083 22.5 7.1 57 21-80 98-154 (294)
349 cd00842 MPP_ASMase acid sphing 22.4 2.6E+02 0.0056 23.9 6.0 27 54-80 196-222 (296)
350 PRK13537 nodulation ABC transp 22.3 1.7E+02 0.0036 25.6 4.8 32 50-81 167-198 (306)
351 PLN02762 pyruvate kinase compl 22.3 1.5E+02 0.0033 28.3 4.8 21 19-39 40-60 (509)
352 PRK04147 N-acetylneuraminate l 22.3 4.4E+02 0.0095 22.7 7.4 66 49-128 18-84 (293)
353 PHA02769 hypothetical protein; 22.2 1.5E+02 0.0033 22.6 3.8 34 57-90 98-131 (154)
354 COG2355 Zn-dependent dipeptida 21.9 1.7E+02 0.0036 26.2 4.6 55 20-82 112-171 (313)
355 cd00951 KDGDH 5-dehydro-4-deox 21.8 4.3E+02 0.0094 22.8 7.3 62 49-124 15-76 (289)
356 PRK09249 coproporphyrinogen II 21.8 3.4E+02 0.0073 25.2 7.0 68 14-85 216-292 (453)
357 PRK05826 pyruvate kinase; Prov 21.8 1.6E+02 0.0035 27.7 4.8 22 19-40 19-40 (465)
358 PTZ00333 triosephosphate isome 21.7 3.2E+02 0.007 23.5 6.3 49 22-79 82-130 (255)
359 cd06589 GH31 The enzymes of gl 21.6 3.8E+02 0.0083 22.7 6.8 90 18-130 26-120 (265)
360 PRK14567 triosephosphate isome 21.5 3E+02 0.0065 23.7 6.1 49 22-79 78-126 (253)
361 PF03162 Y_phosphatase2: Tyros 21.5 3.1E+02 0.0067 21.8 5.8 82 19-109 46-133 (164)
362 PRK00109 Holliday junction res 21.4 3.6E+02 0.0078 20.7 6.0 48 59-115 42-89 (138)
363 PF05404 TRAP-delta: Transloco 21.3 81 0.0018 25.5 2.4 68 33-105 78-151 (167)
364 COG2179 Predicted hydrolase of 21.2 2.7E+02 0.0059 22.7 5.3 56 17-79 15-70 (175)
365 TIGR03249 KdgD 5-dehydro-4-deo 21.2 4.5E+02 0.0097 22.7 7.3 63 49-125 20-82 (296)
366 KOG0471 Alpha-amylase [Carbohy 21.0 2E+02 0.0044 27.6 5.4 64 13-79 37-109 (545)
367 PF09314 DUF1972: Domain of un 20.9 1.7E+02 0.0037 23.9 4.3 20 99-118 138-157 (185)
368 cd00560 PanC Pantoate-beta-ala 20.8 89 0.0019 27.3 2.7 30 16-46 73-102 (277)
369 cd00861 ProRS_anticodon_short 20.8 2.1E+02 0.0045 19.6 4.3 26 53-78 13-38 (94)
370 PLN02417 dihydrodipicolinate s 20.7 5.4E+02 0.012 22.1 7.7 67 49-129 16-82 (280)
371 PRK09967 putative outer membra 20.7 4.3E+02 0.0093 20.9 6.7 65 16-82 25-93 (160)
372 TIGR00612 ispG_gcpE 1-hydroxy- 20.6 6.5E+02 0.014 22.9 9.0 54 18-89 36-89 (346)
373 cd01018 ZntC Metal binding pro 20.5 1.7E+02 0.0038 24.8 4.5 42 24-78 183-224 (266)
374 PLN02389 biotin synthase 20.5 3.1E+02 0.0067 25.0 6.3 49 22-78 125-173 (379)
375 TIGR03586 PseI pseudaminic aci 20.3 2.7E+02 0.0059 24.9 5.7 64 17-80 18-99 (327)
376 cd06594 GH31_glucosidase_YihQ 20.1 4.8E+02 0.01 23.0 7.3 104 20-128 27-168 (317)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-72 Score=512.50 Aligned_cols=222 Identities=61% Similarity=1.177 Sum_probs=214.2
Q ss_pred cCCCCCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC
Q 046612 2 IFDRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHF 81 (223)
Q Consensus 2 ~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 81 (223)
+.+..++++|||+||+|+|||+||++||+++||||||||||+|.|...+.+|++||++|+++|++|+++||+|+|||+||
T Consensus 77 ~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHw 156 (524)
T KOG0626|consen 77 ICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHW 156 (524)
T ss_pred cccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 34577899999999999999999999999999999999999999843368999999999999999999999999999999
Q ss_pred CCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChH
Q 046612 82 DPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEP 161 (223)
Q Consensus 82 ~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~ 161 (223)
|+|++|+++||||.|++++++|.+||+.||++|||+||+|+|||||++++..||..|..|||+|+....+|+.++++.+.
T Consensus 157 DlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~ep 236 (524)
T KOG0626|consen 157 DLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEP 236 (524)
T ss_pred CCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhcCC
Q 046612 162 YIAAHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRARDFFFGW 223 (223)
Q Consensus 162 ~~~~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~ 223 (223)
|.+.|||++|||+||++||+.++..|+|+|||+++..|++|++.+++|++||+|+.+|.+||
T Consensus 237 Yiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw 298 (524)
T KOG0626|consen 237 YIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGW 298 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhh
Confidence 99999999999999999999988889999999999999999988899999999999999998
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=3.3e-67 Score=486.46 Aligned_cols=216 Identities=50% Similarity=0.969 Sum_probs=198.6
Q ss_pred CCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 6 STGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 6 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
.++++||||||||+|||+||++||+++|||||+||||+|++ .|.+|++||++|+++|++|+++||+|+|||+|||+|+
T Consensus 72 ~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G--~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 72 AAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSG--RGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred CCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 47889999999999999999999999999999999999998 4889999999999999999999999999999999999
Q ss_pred hhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCC-CCCCCCCCCChHHHH
Q 046612 86 ALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYV-GNCTAGDSATEPYIA 164 (223)
Q Consensus 86 ~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~-~~~~~~~~~~~~~~~ 164 (223)
||+++||||.|++++++|++||+.|+++|||+|++|+|||||++++..||..|.+|||++.... .+|..+++.++.+++
T Consensus 150 ~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~ 229 (497)
T PLN02998 150 ALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIA 229 (497)
T ss_pred HHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHH
Confidence 9999899999999999999999999999999999999999999999999999999999643111 124444445678999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhcCC
Q 046612 165 AHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRARDFFFGW 223 (223)
Q Consensus 165 ~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~ 223 (223)
+||+++|||+|++++|+.++..++++|||+++..+++|.+++++|++||++.++|.++|
T Consensus 230 ~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~ 288 (497)
T PLN02998 230 VHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGW 288 (497)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999765568899999999999999999999999999999988876
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=6.1e-67 Score=485.29 Aligned_cols=217 Identities=50% Similarity=1.008 Sum_probs=198.1
Q ss_pred CCCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 5 RSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 5 ~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
+.++++||||||||+|||+|||+||+++|||||+|+||+|++ .|.+|++||++|+++|++|+++||+|+|||+|||+|
T Consensus 68 ~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G--~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 68 MSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNG--RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred CCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 457889999999999999999999999999999999999998 489999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 046612 85 QALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIA 164 (223)
Q Consensus 85 ~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~~~ 164 (223)
+||+++||||.|++++++|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+.....+|+.+++.++.+++
T Consensus 146 ~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a 225 (503)
T PLN02849 146 QYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIV 225 (503)
T ss_pred HHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHH
Confidence 99999899999999999999999999999999999999999999999999999999999643111123333344578999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhcCC
Q 046612 165 AHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRARDFFFGW 223 (223)
Q Consensus 165 ~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~ 223 (223)
+||+++|||+||+++|++++..|+++||++++..+++|.+++++|++||++.+++.++|
T Consensus 226 ~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~ 284 (503)
T PLN02849 226 GHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGW 284 (503)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999754457899999999999999999999999999999988776
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.3e-66 Score=483.13 Aligned_cols=217 Identities=48% Similarity=0.932 Sum_probs=197.4
Q ss_pred CCCCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC
Q 046612 4 DRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP 83 (223)
Q Consensus 4 ~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~ 83 (223)
++.++++||||||||+|||+|||+||+++|||||+||||+|++ +|.+|++||++|+++|++|+++||+|+|||+|||+
T Consensus 65 ~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G--~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 65 NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNG--RGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 3458899999999999999999999999999999999999998 48999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCC-CCCCCCCCCChHH
Q 046612 84 PQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYV-GNCTAGDSATEPY 162 (223)
Q Consensus 84 P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~-~~~~~~~~~~~~~ 162 (223)
|+||+++||||.|++++++|++||+.|+++|||+|++|+|||||++++..||..|.. ||.++... -+|..+++.++.+
T Consensus 143 P~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~ 221 (504)
T PLN02814 143 PQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETY 221 (504)
T ss_pred CHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHH
Confidence 999999999999999999999999999999999999999999999999999999885 87544210 1233334446789
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhcCC
Q 046612 163 IAAHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRARDFFFGW 223 (223)
Q Consensus 163 ~~~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~ 223 (223)
+++||+++|||+||+++|+.++..|+++||++++..+++|++++|+|+.||++++++.++|
T Consensus 222 ~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~ 282 (504)
T PLN02814 222 IAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGW 282 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999766578999999999999999999999999999999988776
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-65 Score=463.54 Aligned_cols=205 Identities=41% Similarity=0.688 Sum_probs=193.3
Q ss_pred CCCCCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 3 FDRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 3 ~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
..+.++++||||||||+|||+||++||+++|||||+||||+|.+. .+++|++||++|+++|++|+++||+|+|||+|||
T Consensus 46 ~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd 124 (460)
T COG2723 46 VSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFD 124 (460)
T ss_pred cCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 456889999999999999999999999999999999999999984 2389999999999999999999999999999999
Q ss_pred CchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChHH
Q 046612 83 PPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPY 162 (223)
Q Consensus 83 ~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~ 162 (223)
+|+||+++||||.|++++++|++||+.||+||||+|++|+||||||+.+..||+.|.+||+..+. +.++
T Consensus 125 ~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~~-----------~~~~ 193 (460)
T COG2723 125 LPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVDP-----------KAAY 193 (460)
T ss_pred CcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccCH-----------HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987652 6889
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhcC
Q 046612 163 IAAHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRARDFFFG 222 (223)
Q Consensus 163 ~~~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~ 222 (223)
|++||+++|||+|++++|++ .++.+|||+++..+.||.+++|+|+.||+.++++.++
T Consensus 194 qa~hh~~lA~A~avk~~~~~---~~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~ 250 (460)
T COG2723 194 QVAHHMLLAHALAVKAIKKI---NPKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNR 250 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhh---CCcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999996 3444999999999999999999999999999998864
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=9.3e-65 Score=468.66 Aligned_cols=200 Identities=37% Similarity=0.662 Sum_probs=189.4
Q ss_pred CCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchh
Q 046612 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQA 86 (223)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~ 86 (223)
++++||||||||+|||+||++||+++|||||+||||+|++ +|.+|++||++|+++|++|+++||+|+|||+|||+|+|
T Consensus 45 ~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G--~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~ 122 (469)
T PRK13511 45 TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDG--YGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEA 122 (469)
T ss_pred CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHH
Confidence 7899999999999999999999999999999999999998 48999999999999999999999999999999999999
Q ss_pred hhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 046612 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAAH 166 (223)
Q Consensus 87 l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~~~~h 166 (223)
|+++ |||.|+++++.|++||+.|+++||| |++|+|||||++++..||..|.+|||++.. ....++++|
T Consensus 123 L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~h 190 (469)
T PRK13511 123 LHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHH 190 (469)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHH
Confidence 9976 9999999999999999999999999 999999999999999999999999996421 136899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCC-CCHHHHHHHHHHHHHhcCC
Q 046612 167 NMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKF-KTAASRQAASRARDFFFGW 223 (223)
Q Consensus 167 n~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~-~~~~D~~aa~~~~~~~~~~ 223 (223)
|+++|||+||+++|+. .|+++||++++..+++|.+ ++++|++||++.++|.++|
T Consensus 191 n~llAHa~A~~~~~~~---~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~ 245 (469)
T PRK13511 191 NMMVAHARAVKLFKDK---GYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKF 245 (469)
T ss_pred HHHHHHHHHHHHHHHh---CCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999996 4789999999999999998 8999999999999998876
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=1.5e-64 Score=466.63 Aligned_cols=200 Identities=37% Similarity=0.655 Sum_probs=188.4
Q ss_pred CCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchh
Q 046612 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQA 86 (223)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~ 86 (223)
++++||||||||+|||+||++||+++|||||+||||+|++ .|.+|++||++|+++|++|+++||+|+|||+|||+|+|
T Consensus 44 ~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g--~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~ 121 (467)
T TIGR01233 44 TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTG--YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEA 121 (467)
T ss_pred CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHH
Confidence 6789999999999999999999999999999999999998 48999999999999999999999999999999999999
Q ss_pred hhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 046612 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAAH 166 (223)
Q Consensus 87 l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~~~~h 166 (223)
|+++ |||.|++++++|++||+.|+++||+ |++|+|||||++++..||+.|.+|||.+.. .++.++++|
T Consensus 122 L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~h 189 (467)
T TIGR01233 122 LHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHH 189 (467)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccch----------hHHHHHHHH
Confidence 9976 9999999999999999999999998 999999999999999999999999995321 136899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCC-CCHHHHHHHHHHHHHhcCC
Q 046612 167 NMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKF-KTAASRQAASRARDFFFGW 223 (223)
Q Consensus 167 n~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~-~~~~D~~aa~~~~~~~~~~ 223 (223)
|+++|||+||+++|++ .++++|||+++..+++|.+ ++++|++||++.+++.++|
T Consensus 190 n~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~ 244 (467)
T TIGR01233 190 NMMVSHARAVKLYKDK---GYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKF 244 (467)
T ss_pred HHHHHHHHHHHHHHHh---CCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999996 5789999999999999997 8999999999999887765
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.1e-63 Score=461.74 Aligned_cols=197 Identities=32% Similarity=0.542 Sum_probs=181.6
Q ss_pred CCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchh
Q 046612 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQA 86 (223)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~ 86 (223)
++++||||||||+|||+||++||+++|||||+||||+|++. .|.+|++||++|+++|++|+++||+|+|||+|||+|+|
T Consensus 64 ~~~~a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~ 142 (478)
T PRK09593 64 PAKEAIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMH 142 (478)
T ss_pred CCCcccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHH
Confidence 57899999999999999999999999999999999999974 25799999999999999999999999999999999999
Q ss_pred hhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCccccccccc-CCC-CCCCCCCCCCCCCCCCCCCChHHHH
Q 046612 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYN-GGS-FAPGRCSNYVGNCTAGDSATEPYIA 164 (223)
Q Consensus 87 l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~-~g~-~~pg~~~~~~~~~~~~~~~~~~~~~ 164 (223)
|+++||||.|++++++|++||+.|+++|||+|++|+|||||++++..||. .|. +|||..+ ..+.+++
T Consensus 143 L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a 211 (478)
T PRK09593 143 LIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQA 211 (478)
T ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHH
Confidence 99999999999999999999999999999999999999999999988886 454 4776422 2468999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHHH
Q 046612 165 AHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRARD 218 (223)
Q Consensus 165 ~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~~ 218 (223)
+||+++|||+|++++|+. .|+++||++++..+++|.+++++|++||++.+.
T Consensus 212 ~h~~llAHa~A~~~~~~~---~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~ 262 (478)
T PRK09593 212 AHHELVASAIATKIAHEV---DPENKVGCMLAAGQYYPNTCHPEDVWAAMKEDR 262 (478)
T ss_pred HHHHHHHHHHHHHHHHHh---CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHH
Confidence 999999999999999985 578999999999999999999999999998763
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.9e-63 Score=458.83 Aligned_cols=198 Identities=35% Similarity=0.557 Sum_probs=179.7
Q ss_pred CCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchh
Q 046612 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQA 86 (223)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~ 86 (223)
++++||||||||+|||+||++||+++|||||+||||+|++. .|.+|++||++|+++|++|+++||+|+|||+|||+|+|
T Consensus 58 ~~~~a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~ 136 (476)
T PRK09589 58 PNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYH 136 (476)
T ss_pred CCcccccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHH
Confidence 57889999999999999999999999999999999999974 25699999999999999999999999999999999999
Q ss_pred hhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccc-----ccc-CCC-CCCCCCCCCCCCCCCCCCCC
Q 046612 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMN-----GYN-GGS-FAPGRCSNYVGNCTAGDSAT 159 (223)
Q Consensus 87 l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~-----~y~-~g~-~~pg~~~~~~~~~~~~~~~~ 159 (223)
|+++||||.|++++++|++||+.|+++|||+|++|+|||||++++.. ||. .|. +|||... ..
T Consensus 137 L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~ 205 (476)
T PRK09589 137 LVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQ 205 (476)
T ss_pred HHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hH
Confidence 99999999999999999999999999999999999999999998766 444 343 3665321 14
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHH
Q 046612 160 EPYIAAHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRARDF 219 (223)
Q Consensus 160 ~~~~~~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~~~ 219 (223)
..++++||+++|||+|++++|++ .|+++||++++..+++|.+++|+|++||++.+++
T Consensus 206 ~~~~~~h~~llAha~A~~~~~~~---~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~ 262 (476)
T PRK09589 206 IMYQAAHYELVASALAVKTGHEI---NPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR 262 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---CCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh
Confidence 57999999999999999999986 4788999999999999999999999999998854
No 10
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.2e-61 Score=448.03 Aligned_cols=197 Identities=32% Similarity=0.555 Sum_probs=180.4
Q ss_pred CCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchh
Q 046612 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQA 86 (223)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~ 86 (223)
++++||||||||+|||+||++||+++|||||+|+||+|++. .|.+|+++|++|+++|++|+++||+|+|||+|||+|+|
T Consensus 60 ~~~~A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~ 138 (477)
T PRK15014 60 PNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLH 138 (477)
T ss_pred CCCcccCcccccHHHHHHHHHcCCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 67899999999999999999999999999999999999974 26799999999999999999999999999999999999
Q ss_pred hhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCccc-----ccccccC-CCC-CCCCCCCCCCCCCCCCCCC
Q 046612 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM-----VMNGYNG-GSF-APGRCSNYVGNCTAGDSAT 159 (223)
Q Consensus 87 l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~-----~~~~y~~-g~~-~pg~~~~~~~~~~~~~~~~ 159 (223)
|+++||||.|++++++|++||+.|+++|||+|++|+|||||++. +..||.. |.+ ||+... ..
T Consensus 139 L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~-----------~~ 207 (477)
T PRK15014 139 LVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENP-----------EE 207 (477)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCch-----------hH
Confidence 99999999999999999999999999999999999999999987 6778874 765 454211 14
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHHH
Q 046612 160 EPYIAAHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRARD 218 (223)
Q Consensus 160 ~~~~~~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~~ 218 (223)
+.++++||+++|||+|++++|+. .++++||++++..+++|.+++|+|++||++.+.
T Consensus 208 ~~~~~~h~~llAHa~A~~~~~~~---~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~ 263 (477)
T PRK15014 208 TMYQVLHHQFVASALAVKAARRI---NPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR 263 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEEeCceeccCCCCHHHHHHHHHHHH
Confidence 58999999999999999999996 478999999999999999999999999988764
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=2.4e-62 Score=451.76 Aligned_cols=206 Identities=50% Similarity=0.873 Sum_probs=186.7
Q ss_pred cCCCCCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC
Q 046612 2 IFDRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHF 81 (223)
Q Consensus 2 ~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 81 (223)
+.++.++++||||||+|+|||+||++||+++|||||+|+||+|+|. +|.+|+++|++|+++|++|+++||+|||||+||
T Consensus 44 ~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~ 122 (455)
T PF00232_consen 44 VEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTLYHF 122 (455)
T ss_dssp STTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS
T ss_pred eeccccCcccccchhhhhHHHHHHHhhccceeeeecchhheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeeeeec
Confidence 4567789999999999999999999999999999999999999973 399999999999999999999999999999999
Q ss_pred CCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChH
Q 046612 82 DPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEP 161 (223)
Q Consensus 82 ~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~ 161 (223)
|+|+||++ +|||.|+++++.|++||+.|+++|||+|++|+|||||++++..||+.|.+|||..+. .+.
T Consensus 123 ~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~-----------~~~ 190 (455)
T PF00232_consen 123 DLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDSL-----------KAF 190 (455)
T ss_dssp --BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTH-----------HHH
T ss_pred ccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccceeecccccccccccccccc-----------chh
Confidence 99999998 699999999999999999999999999999999999999999999999999996542 678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHH-HHHHHHHHHhcCC
Q 046612 162 YIAAHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASR-QAASRARDFFFGW 223 (223)
Q Consensus 162 ~~~~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~-~aa~~~~~~~~~~ 223 (223)
++++||+++|||+|++++|+++ ++++||++++..+++|.+++++|+ +||++.+++.++|
T Consensus 191 ~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~ 250 (455)
T PF00232_consen 191 YQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGW 250 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHH
T ss_pred hHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchhhHHHHHHHHHHhhcc
Confidence 9999999999999999999984 899999999999999999988776 8889999988765
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=9.6e-61 Score=441.40 Aligned_cols=196 Identities=33% Similarity=0.561 Sum_probs=181.5
Q ss_pred CCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchh
Q 046612 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQA 86 (223)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~ 86 (223)
++++||||||||+||++||++||+++|||||+|+||+|++. .+.+|+++|++|+++|++|+++||+|||||+|||+|+|
T Consensus 62 ~~~~A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~ 140 (474)
T PRK09852 62 PSHEAIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMH 140 (474)
T ss_pred CCCccCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 67899999999999999999999999999999999999974 25689999999999999999999999999999999999
Q ss_pred hhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCccccccccc-CCC-CCCCCCCCCCCCCCCCCCCChHHHH
Q 046612 87 LEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYN-GGS-FAPGRCSNYVGNCTAGDSATEPYIA 164 (223)
Q Consensus 87 l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~-~g~-~~pg~~~~~~~~~~~~~~~~~~~~~ 164 (223)
|+++||||.|+++++.|++||+.|+++|||+|++|+|||||++++..||. .|. +|||... ....+++
T Consensus 141 l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~ 209 (474)
T PRK09852 141 LVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQA 209 (474)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHH
Confidence 99989999999999999999999999999999999999999999999996 665 5887422 1457999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHH
Q 046612 165 AHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRAR 217 (223)
Q Consensus 165 ~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~ 217 (223)
+||+++|||+|++++|+. .++++||++++..+++|.+++++|++||++.+
T Consensus 210 ~hn~llAHa~A~~~~~~~---~~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~ 259 (474)
T PRK09852 210 AHHELVASALATKIAHEV---NPQNQVGCMLAGGNFYPYSCKPEDVWAALEKD 259 (474)
T ss_pred HHHHHHHHHHHHHHHHHh---CCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH
Confidence 999999999999999986 47899999999999999999999999998755
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=4.1e-60 Score=433.38 Aligned_cols=203 Identities=41% Similarity=0.741 Sum_probs=191.1
Q ss_pred CCCCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC
Q 046612 4 DRSTGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP 83 (223)
Q Consensus 4 ~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~ 83 (223)
++.++++||||||+|+||+++|++||+++|||||+|+||+|++ +|.+|+++|++|+++|+.|+++||+|||||+|||+
T Consensus 42 ~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g--~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~ 119 (427)
T TIGR03356 42 DGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEG--TGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDL 119 (427)
T ss_pred CCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCC--CCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCc
Confidence 4457889999999999999999999999999999999999997 48999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChHHH
Q 046612 84 PQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYI 163 (223)
Q Consensus 84 P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~~ 163 (223)
|+||+++ |||.++++++.|++||+.|+++||++|++|+|+|||++.+..||..|.+||+.++. ...++
T Consensus 120 P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~-----------~~~~~ 187 (427)
T TIGR03356 120 PQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRDL-----------RAALQ 187 (427)
T ss_pred cHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCccH-----------HHHHH
Confidence 9999988 99999999999999999999999999999999999999999999999999985431 35789
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCeEEEeecCceeecCCCCHHHHHHHHHHHHHhcCC
Q 046612 164 AAHNMLLSHGALVNLYKHKYQPYQMGKIGITILTHWFEPKFKTAASRQAASRARDFFFGW 223 (223)
Q Consensus 164 ~~hn~l~AHa~a~~~~k~~~~~~~~~kvGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~ 223 (223)
++||+++|||+|++++|++ .|+++||++++..+++|.+++++|+.||++.+++.++|
T Consensus 188 ~~hnll~Aha~A~~~~~~~---~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~ 244 (427)
T TIGR03356 188 AAHHLLLAHGLAVQALRAN---GPGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRW 244 (427)
T ss_pred HHHHHHHHHHHHHHHHHHh---CCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999996 47899999999999999999999999999999988776
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.55 E-value=1.2e-14 Score=131.27 Aligned_cols=108 Identities=26% Similarity=0.446 Sum_probs=86.8
Q ss_pred cChHHHHHHHHHcCCCEEEe-cccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhh---
Q 046612 16 HHYKEDIKLMKKVGLDSFRF-SISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEY--- 91 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~--- 91 (223)
..+++|+++|+++|+|++|+ .++|++|||++ |++|+ ..+|++|+.+.++||++++.+.....|.|+.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 36899999999999999997 57999999998 99999 5679999999999999999999899999997653
Q ss_pred ------------CCC-----CChHhHHHHHHHHHHHHHHhCCC--cccEEeecCCcc
Q 046612 92 ------------GGF-----LSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPNG 129 (223)
Q Consensus 92 ------------gg~-----~~~~~~~~f~~y~~~~~~~~~~~--v~~w~t~NEp~~ 129 (223)
|+. .+|...+.+.++++.++++|++. |-.|.+.|||..
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 111 23566788888899999999986 889999999976
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.55 E-value=2.5e-14 Score=122.59 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccc-cCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRIL-PKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~-P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 95 (223)
..++|++.|+++|+|++|+.|.|..++ |.+ .+.++...++.++++|+.+.++||.++|++|+. |.|.... ++..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~--~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP--GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST--TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC--CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 679999999999999999999998888 565 357999999999999999999999999999874 7774332 2333
Q ss_pred C-hHhHHHHHHHHHHHHHHhCC--CcccEEeecCCcccc
Q 046612 96 S-PKIVKDFVDYGDFCFKTYGD--RVKLWASMNEPNGMV 131 (223)
Q Consensus 96 ~-~~~~~~f~~y~~~~~~~~~~--~v~~w~t~NEp~~~~ 131 (223)
. ....+.|.++++.++++|++ .|..|.++|||....
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 135 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGN 135 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTT
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccC
Confidence 3 45678899999999999955 488999999998653
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.07 E-value=5.2e-10 Score=96.15 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=71.6
Q ss_pred ccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCee--EEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHh
Q 046612 37 ISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKP--FVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTY 114 (223)
Q Consensus 37 i~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p--~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~ 114 (223)
+.|++++|++ |.+|++ ..|++++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||
T Consensus 1 ~kW~~~ep~~---G~~n~~---~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry 70 (254)
T smart00633 1 MKWDSTEPSR---GQFNFS---GADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRY 70 (254)
T ss_pred CCcccccCCC---CccChH---HHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHh
Confidence 3699999997 999994 4589999999999995 4456677899998742 2 4577899999999999999
Q ss_pred CCCcccEEeecCCccc
Q 046612 115 GDRVKLWASMNEPNGM 130 (223)
Q Consensus 115 ~~~v~~w~t~NEp~~~ 130 (223)
+++|..|.++|||...
T Consensus 71 ~g~i~~wdV~NE~~~~ 86 (254)
T smart00633 71 KGKIYAWDVVNEALHD 86 (254)
T ss_pred CCcceEEEEeeecccC
Confidence 9999999999999853
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=6.6e-09 Score=99.60 Aligned_cols=117 Identities=22% Similarity=0.406 Sum_probs=91.3
Q ss_pred hHHHHHHHHHcCCCEEEec-ccccccccCCCCCCCCChhHHHHHHHH-HHHHHhCCCeeEEec-CCCCCchhhhhhh---
Q 046612 18 YKEDIKLMKKVGLDSFRFS-ISWTRILPKGKISGGVNPLGVKFYKDL-INELLANDIKPFVTL-LHFDPPQALEEEY--- 91 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~s-i~W~ri~P~~~~~g~~n~~~l~~y~~~-i~~l~~~gi~p~vtL-~h~~~P~~l~~~~--- 91 (223)
+.+|++.||++|+|++|.+ ++|++++|+. |.+|++ +.|.. ++.+.+.||.+++.- .....|.|+..+|
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 7789999999999999995 6999999997 999996 66777 999999999999988 7788899987664
Q ss_pred ------------CCCCChHhH-HHHHHHHHH----HHHH-hCCC--cccEEeecCCcc-cccccccCCCC
Q 046612 92 ------------GGFLSPKIV-KDFVDYGDF----CFKT-YGDR--VKLWASMNEPNG-MVMNGYNGGSF 140 (223)
Q Consensus 92 ------------gg~~~~~~~-~~f~~y~~~----~~~~-~~~~--v~~w~t~NEp~~-~~~~~y~~g~~ 140 (223)
|+|.+-+.. ..|..|++. +.+| ||+. |-.|.+-||-.. .+...|+.+.|
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f 175 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAF 175 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHH
Confidence 456443322 246666665 7888 8775 888999998665 45544444333
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1e-07 Score=87.30 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=85.6
Q ss_pred CCcccCh-----HHHHHHHHHcCCCEEEecccccccccCCCCCCCCC-hhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 12 SGFYHHY-----KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVN-PLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 12 ~d~y~~~-----~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
.-....| ++|+..|++.|+|++|+.|.|..+++.+..+..+. ...+...+++|+.+++.||.++++||+..-+.
T Consensus 64 ~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~ 143 (407)
T COG2730 64 GLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGN 143 (407)
T ss_pred ccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCC
Confidence 3344556 89999999999999999999777666420012333 45556899999999999999999999865222
Q ss_pred hhhhh--h-CCCC-ChHhHHHHHHHHHHHHHHhCCC--cccEEeecCCcc
Q 046612 86 ALEEE--Y-GGFL-SPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPNG 129 (223)
Q Consensus 86 ~l~~~--~-gg~~-~~~~~~~f~~y~~~~~~~~~~~--v~~w~t~NEp~~ 129 (223)
--.+. + +.+. ..+.++++.+-++.++.||++. |-...++|||+.
T Consensus 144 ~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 144 NGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 11111 0 1222 3457899999999999999985 555679999985
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.58 E-value=2.6e-07 Score=86.54 Aligned_cols=106 Identities=27% Similarity=0.442 Sum_probs=62.9
Q ss_pred hHHHHHHH-HHcCCCEEEec--c--ccccccc-CCCCCC--CCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhh
Q 046612 18 YKEDIKLM-KKVGLDSFRFS--I--SWTRILP-KGKISG--GVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEE 89 (223)
Q Consensus 18 ~~eDi~l~-~~lG~~~~R~s--i--~W~ri~P-~~~~~g--~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~ 89 (223)
+.+.+..+ +++|++.+||- + +..-..+ ++ +| .+|+ ...|+++|.|.++||+|+|.|-. +|.++..
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~--~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~ 113 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE--DGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALAS 113 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET--TEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhcccccc--CCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcC
Confidence 45555555 49999999986 2 2222322 22 13 2899 66699999999999999999975 6777643
Q ss_pred h------hCCCCC-hHhHHHHHHHHHHHHHH----hCC-Cccc--EEeecCCccc
Q 046612 90 E------YGGFLS-PKIVKDFVDYGDFCFKT----YGD-RVKL--WASMNEPNGM 130 (223)
Q Consensus 90 ~------~gg~~~-~~~~~~f~~y~~~~~~~----~~~-~v~~--w~t~NEp~~~ 130 (223)
. +.|+.. |+..+.|.++++.+++| ||. .|.. |++||||++.
T Consensus 114 ~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 114 GYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp S--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 2 122322 56678888887666555 553 3664 5899999974
No 20
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.14 E-value=1.4e-05 Score=71.02 Aligned_cols=109 Identities=14% Similarity=0.132 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--------CCCCchhhh
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL--------HFDPPQALE 88 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--------h~~~P~~l~ 88 (223)
.|++-++.||++|+|++-+-+.|.--||.+ |.+|+++..-.+++|+.++++|+.+++-.- .-++|.||.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 378889999999999999999999999998 999999988889999999999999887532 135899998
Q ss_pred hhhCCC---CChHhHHHHHHHHHHHHHHhCC-------CcccEEeecCCc
Q 046612 89 EEYGGF---LSPKIVKDFVDYGDFCFKTYGD-------RVKLWASMNEPN 128 (223)
Q Consensus 89 ~~~gg~---~~~~~~~~f~~y~~~~~~~~~~-------~v~~w~t~NEp~ 128 (223)
.+.+.. .++...++..+|.+.+++...+ -|-...+=||..
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 653332 2355666666677776666533 355666778865
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.03 E-value=2.2e-05 Score=69.81 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCEEEec--ccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEE--ecCCCCCchhhhhhhCCCCC
Q 046612 21 DIKLMKKVGLDSFRFS--ISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFV--TLLHFDPPQALEEEYGGFLS 96 (223)
Q Consensus 21 Di~l~~~lG~~~~R~s--i~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v--tL~h~~~P~~l~~~~gg~~~ 96 (223)
....+-.--+|.+=.. .-|..++|.+ |.+|++ ..|++++.++++||++-. .+.|--.|.|+... .-+..
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~---g~~~~~---~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~ 98 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEPEP---GRFNFE---SADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSP 98 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHESBT---TBEE-H---HHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSB
T ss_pred HHHHHHHHhCCeeeeccccchhhhcCCC---CccCcc---chhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCc
Confidence 3556666778888776 7899999997 999995 459999999999999874 34466789999853 12332
Q ss_pred hH---hHHHHHHHHHHHHHHhC--CCcccEEeecCCccc
Q 046612 97 PK---IVKDFVDYGDFCFKTYG--DRVKLWASMNEPNGM 130 (223)
Q Consensus 97 ~~---~~~~f~~y~~~~~~~~~--~~v~~w~t~NEp~~~ 130 (223)
.+ ......+|.+.+++||+ ++|..|-++|||-..
T Consensus 99 ~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 99 DEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDD 137 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-T
T ss_pred ccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccC
Confidence 33 67888999999999999 589999999999654
No 22
>PLN03059 beta-galactosidase; Provisional
Probab=97.85 E-value=0.00012 Score=72.11 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=79.9
Q ss_pred CCcccC-----hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC-------
Q 046612 12 SGFYHH-----YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL------- 79 (223)
Q Consensus 12 ~d~y~~-----~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~------- 79 (223)
.=||-| |++=++.||++|+|++-.=+.|.--||.+ |++|+++..=..++|+.+.+.|+-+|+-.-
T Consensus 50 ~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw 126 (840)
T PLN03059 50 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEW 126 (840)
T ss_pred CcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeee
Confidence 346754 77779999999999999999999999997 999999999999999999999999888543
Q ss_pred -CCCCchhhhhhhCCCC----ChHhHHHHHHHHHHHHHHh
Q 046612 80 -HFDPPQALEEEYGGFL----SPKIVKDFVDYGDFCFKTY 114 (223)
Q Consensus 80 -h~~~P~~l~~~~gg~~----~~~~~~~f~~y~~~~~~~~ 114 (223)
.-++|.||... .|-. ++...++-.+|.+.+++..
T Consensus 127 ~~GGlP~WL~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 127 NFGGFPVWLKYV-PGIEFRTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred cCCCCchhhhcC-CCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 35789999753 4422 4556666667777777666
No 23
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.80 E-value=0.00095 Score=59.71 Aligned_cols=142 Identities=14% Similarity=0.189 Sum_probs=87.6
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhh----hhhCC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALE----EEYGG 93 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~----~~~gg 93 (223)
-++=+++||+.|+|++|+-+ | +-|.. .|..|. +.-.++.++++++||+++|++| |. -.|.. .+-..
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv-w--v~P~~--~g~~~~---~~~~~~akrak~~Gm~vlldfH-YS-D~WaDPg~Q~~P~a 95 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV-W--VNPYD--GGYNDL---EDVIALAKRAKAAGMKVLLDFH-YS-DFWADPGKQNKPAA 95 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE----SS-TT--TTTTSH---HHHHHHHHHHHHTT-EEEEEE--SS-SS--BTTB-B--TT
T ss_pred CCCHHHHHHhcCCCeEEEEe-c--cCCcc--cccCCH---HHHHHHHHHHHHCCCeEEEeec-cc-CCCCCCCCCCCCcc
Confidence 35558999999999999987 4 34442 266666 5668999999999999999996 32 12321 11146
Q ss_pred CCC---hHhHHHHHHHHHHHHHHhCC---CcccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 046612 94 FLS---PKIVKDFVDYGDFCFKTYGD---RVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAAHN 167 (223)
Q Consensus 94 ~~~---~~~~~~f~~y~~~~~~~~~~---~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~~~~hn 167 (223)
|.+ .+..+.-.+|.+.+.+.+++ .++.+.+=||.+...+ +|.|.. .-+.-+-.
T Consensus 96 W~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~--------------~~~~~~a~ 154 (332)
T PF07745_consen 96 WANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP--------------SNWDNLAK 154 (332)
T ss_dssp CTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT--------------T-HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc--------------cCHHHHHH
Confidence 877 56778888888888777644 5888999999874432 455532 12333445
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEeec
Q 046612 168 MLLSHGALVNLYKHKYQPYQMGKIGITIL 196 (223)
Q Consensus 168 ~l~AHa~a~~~~k~~~~~~~~~kvGi~~~ 196 (223)
++.|-.+|++. . .|+.||-+.+.
T Consensus 155 ll~ag~~AVr~---~---~p~~kV~lH~~ 177 (332)
T PF07745_consen 155 LLNAGIKAVRE---V---DPNIKVMLHLA 177 (332)
T ss_dssp HHHHHHHHHHT---H---SSTSEEEEEES
T ss_pred HHHHHHHHHHh---c---CCCCcEEEEEC
Confidence 55555555544 4 46777766654
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.65 E-value=0.00061 Score=59.80 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=62.0
Q ss_pred HHHHHHHcCCCEEEecc--ccccc-c----cCC-C--CC------CCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 21 DIKLMKKVGLDSFRFSI--SWTRI-L----PKG-K--IS------GGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 21 Di~l~~~lG~~~~R~si--~W~ri-~----P~~-~--~~------g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
-++..++.|||++|+.+ .|... . |.. . .+ ..+|++..++.+++|+.|.++||+|.+.+.| +.|
T Consensus 35 yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~~ 113 (289)
T PF13204_consen 35 YLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GCP 113 (289)
T ss_dssp HHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HHH
T ss_pred HHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CCc
Confidence 36778999999999998 35443 1 111 0 00 1379999999999999999999999887664 222
Q ss_pred hhhhhhhCCCCC---hHhHHHHHHHHHHHHHHhCCC-cccEEeecCC
Q 046612 85 QALEEEYGGFLS---PKIVKDFVDYGDFCFKTYGDR-VKLWASMNEP 127 (223)
Q Consensus 85 ~~l~~~~gg~~~---~~~~~~f~~y~~~~~~~~~~~-v~~w~t~NEp 127 (223)
- .+ +.|.. .-..+.-.+|.+.|++||+.. =-.|++-||-
T Consensus 114 ~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 114 Y---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp H---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred c---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 1 11 44532 223677789999999999998 4679999997
No 25
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00019 Score=63.36 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=69.4
Q ss_pred ccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEE-e-cCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHh
Q 046612 37 ISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFV-T-LLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTY 114 (223)
Q Consensus 37 i~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v-t-L~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~ 114 (223)
+-|.-|+|+. |.+|+++- |.+.+-++++||..-- | +.|--.|.|+.. ..+..+...+...++...|++||
T Consensus 67 mKwe~i~p~~---G~f~Fe~A---D~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 67 MKWEAIEPER---GRFNFEAA---DAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccCCC---CccCccch---HHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 4688899975 99999665 8999999999998543 1 235567889863 23666789999999999999999
Q ss_pred CCCcccEEeecCCcc
Q 046612 115 GDRVKLWASMNEPNG 129 (223)
Q Consensus 115 ~~~v~~w~t~NEp~~ 129 (223)
++.|..|-+.|||--
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999965
No 26
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.53 E-value=0.00022 Score=64.59 Aligned_cols=102 Identities=22% Similarity=0.251 Sum_probs=55.6
Q ss_pred HcCCCEEEecc---cc------------cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhh
Q 046612 27 KVGLDSFRFSI---SW------------TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEY 91 (223)
Q Consensus 27 ~lG~~~~R~si---~W------------~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~ 91 (223)
.+|++.+|+.| ++ .|.+--...+|.+|+.+=+-=+.+++.++++|++.++ ++-+..|.|+....
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~NG 136 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKNG 136 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSSS
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcCC
Confidence 59999999987 33 3332111114778875545556689999999999887 44578788875321
Q ss_pred ---CC-----CCChHhHHHHHHHHHHHHHHhCC---CcccEEeecCCcc
Q 046612 92 ---GG-----FLSPKIVKDFVDYGDFCFKTYGD---RVKLWASMNEPNG 129 (223)
Q Consensus 92 ---gg-----~~~~~~~~~f~~y~~~~~~~~~~---~v~~w~t~NEp~~ 129 (223)
|+ =..++..+.|++|-..|+++|.. .+++-.++|||+-
T Consensus 137 ~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 137 SASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 11 13467789999999999999833 5899999999983
No 27
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.45 E-value=0.0011 Score=57.96 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=63.2
Q ss_pred cccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCC
Q 046612 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg 93 (223)
....++.|+.+||++|+|++|++. .|.. .++++.|-+.||-++.-+.....-.|-. .+-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~~--------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~ 92 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPPS--------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGN 92 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S--S--------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSC
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccCc--------------HHHHHHHhhcCCEEEEeccccccCcccc--CCc
Confidence 345789999999999999999953 2322 4566788899999998764322111211 010
Q ss_pred ----CCChHhHHHHHHHHHHHHHHhCCC--cccEEeecCCc
Q 046612 94 ----FLSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPN 128 (223)
Q Consensus 94 ----~~~~~~~~~f~~y~~~~~~~~~~~--v~~w~t~NEp~ 128 (223)
-.+++..+.+.+-++.+++++.+. |-.|.+.||+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~ 133 (298)
T PF02836_consen 93 CNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESD 133 (298)
T ss_dssp TSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCc
Confidence 125677888888889999999886 88999999994
No 28
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.38 E-value=0.00021 Score=64.96 Aligned_cols=99 Identities=16% Similarity=0.300 Sum_probs=74.3
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC-C-----------CC
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-H-----------FD 82 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~ 82 (223)
+...+.+++.+|++|++.+-+.+-|.-+|+.+ .+++|+ ..|+++++.+++.|++..+.|. | ..
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~--p~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEG--PQQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSS--TTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCC--CCccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 44788999999999999999999999999986 499999 6799999999999999777552 2 46
Q ss_pred Cchhhhhh-----------hCC--------CCChHhHHHHHHHHHHHHHHhCCCc
Q 046612 83 PPQALEEE-----------YGG--------FLSPKIVKDFVDYGDFCFKTYGDRV 118 (223)
Q Consensus 83 ~P~~l~~~-----------~gg--------~~~~~~~~~f~~y~~~~~~~~~~~v 118 (223)
+|.|+.+. .|. |....+++.|.+|-+.+.++|.+..
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 89998532 122 3333349999999999999887754
No 29
>PLN02803 beta-amylase
Probab=97.31 E-value=0.001 Score=62.16 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC-C-----------CCCc
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-H-----------FDPP 84 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~P 84 (223)
..+..++.+|.+|++-+-+.+=|--+|..+ .+++|| ..|+++++.+++.|++..+.|. | -.+|
T Consensus 108 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 108 AMNASLMALRSAGVEGVMVDAWWGLVEKDG--PMKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeeeeccCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 367789999999999999999999999987 499999 6699999999999999766654 3 2589
Q ss_pred hhhhhh--------h---CCC----------------CChHhHHHHHHHHHHHHHHhCCCc
Q 046612 85 QALEEE--------Y---GGF----------------LSPKIVKDFVDYGDFCFKTYGDRV 118 (223)
Q Consensus 85 ~~l~~~--------~---gg~----------------~~~~~~~~f~~y~~~~~~~~~~~v 118 (223)
.|+.+. | .|. ..+.-++.|.+|.+.+.+.|.+..
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 243 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL 243 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 997542 0 121 122345888888888887777654
No 30
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.30 E-value=0.0015 Score=62.87 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhh-------
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEE------- 89 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~------- 89 (223)
.+..|+++||++|+|++|+|. .|.. ..+++.|-+.||-++.-+.-++...|...
T Consensus 314 ~~~~d~~l~K~~G~N~vR~sh-----~p~~--------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTSH-----YPYS--------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHCCCCEEEecc-----CCCC--------------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 478899999999999999963 2432 45677899999998876643332222210
Q ss_pred hhCCCC----ChHhHHHHHHHHHHHHHHhCCC--cccEEeecCCc
Q 046612 90 EYGGFL----SPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPN 128 (223)
Q Consensus 90 ~~gg~~----~~~~~~~f~~y~~~~~~~~~~~--v~~w~t~NEp~ 128 (223)
....|. +++..+.+.+-++.+++|++++ |-.|.+.||+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 001222 3567788889899999999887 88999999974
No 31
>PLN02161 beta-amylase
Probab=97.28 E-value=0.0012 Score=61.46 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=79.0
Q ss_pred CCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC-CC---------
Q 046612 12 SGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-HF--------- 81 (223)
Q Consensus 12 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h~--------- 81 (223)
..+....+..++.+|.+|++.+-+.+=|--+|..+ .+++|| ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFS--PLEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 45556678899999999999999999999999987 499999 6699999999999999766653 32
Q ss_pred --CCchhhhhh--------h---CCC----------------CChHhHHHHHHHHHHHHHHhCCCc
Q 046612 82 --DPPQALEEE--------Y---GGF----------------LSPKIVKDFVDYGDFCFKTYGDRV 118 (223)
Q Consensus 82 --~~P~~l~~~--------~---gg~----------------~~~~~~~~f~~y~~~~~~~~~~~v 118 (223)
.+|.|+.+. | .|. ..+.-++.|.+|.+.+.++|.+..
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~ 253 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYI 253 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 489997542 0 121 122345888999888888877754
No 32
>PLN00197 beta-amylase; Provisional
Probab=97.24 E-value=0.0014 Score=61.51 Aligned_cols=97 Identities=18% Similarity=0.272 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC-C-----------CCCc
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-H-----------FDPP 84 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~P 84 (223)
..+..++.+|.+|++-+-+.+=|--+|+.+ .+++|| ..|+++++.+++.|++..+.|. | -.+|
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~--p~~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERES--PGVYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 478889999999999999999999999987 499999 6699999999999999776654 3 2589
Q ss_pred hhhhhh--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCCc
Q 046612 85 QALEEE--------Y---GGFL----------------SPKIVKDFVDYGDFCFKTYGDRV 118 (223)
Q Consensus 85 ~~l~~~--------~---gg~~----------------~~~~~~~f~~y~~~~~~~~~~~v 118 (223)
.|+.+. | .|.. .+.-++.|.+|.+.+..+|.+..
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l 263 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLL 263 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 997542 0 1211 12236889999888877776654
No 33
>PLN02801 beta-amylase
Probab=97.14 E-value=0.003 Score=58.88 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC-C-----------CCCc
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-H-----------FDPP 84 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~P 84 (223)
..+..++.+|.+|++.+-+.+-|--+|..+ .+++|| ..|+++++.+++.|++..+.|. | ..+|
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--P~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 112 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKG--PKQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIP 112 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 477889999999999999999999999986 499999 6699999999999999766553 2 3589
Q ss_pred hhhhhh--------h---CCC----------------CChHhHHHHHHHHHHHHHHhCCCc
Q 046612 85 QALEEE--------Y---GGF----------------LSPKIVKDFVDYGDFCFKTYGDRV 118 (223)
Q Consensus 85 ~~l~~~--------~---gg~----------------~~~~~~~~f~~y~~~~~~~~~~~v 118 (223)
.|+.+. | .|. ..+.-++.|.+|.+.+.++|.+..
T Consensus 113 ~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 113 QWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred HHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 997642 0 121 122346889999988888887754
No 34
>PLN02705 beta-amylase
Probab=96.97 E-value=0.0049 Score=58.56 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=74.9
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC-C-----------CCC
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-H-----------FDP 83 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h-----------~~~ 83 (223)
...+..++.+|.+|++-+-+.+=|--+|..+ .++||| ..|+++++.+++.|++..+.|. | ..+
T Consensus 268 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~--P~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 268 EGVRQELSHMKSLNVDGVVVDCWWGIVEGWN--PQKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeEeecCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 4478889999999999999999999999986 499999 6699999999999999666553 3 258
Q ss_pred chhhhhh--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCC
Q 046612 84 PQALEEE--------Y---GGFL----------------SPKIVKDFVDYGDFCFKTYGDR 117 (223)
Q Consensus 84 P~~l~~~--------~---gg~~----------------~~~~~~~f~~y~~~~~~~~~~~ 117 (223)
|.|+.+. | .|.. .+.-++.|.+|.+.+.+.|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9997642 0 1211 2234588888888877777664
No 35
>PLN02905 beta-amylase
Probab=96.93 E-value=0.005 Score=58.69 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=76.8
Q ss_pred CcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC-C-----------
Q 046612 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-H----------- 80 (223)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h----------- 80 (223)
......+..++.+|.+|++.+-+.+=|--+|+.+ .++||| ..|+++++.+++.|++..+.|. |
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~g--P~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 357 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHA--PQEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVC 357 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 4555678899999999999999999999999987 499999 6699999999999999766654 3
Q ss_pred CCCchhhhhh--------h---CCCC----------------ChHhHHHHHHHHHHHHHHhCCC
Q 046612 81 FDPPQALEEE--------Y---GGFL----------------SPKIVKDFVDYGDFCFKTYGDR 117 (223)
Q Consensus 81 ~~~P~~l~~~--------~---gg~~----------------~~~~~~~f~~y~~~~~~~~~~~ 117 (223)
-.+|.|+.+. | .|.. .+.-++.|.+|.+.+.+.|.+.
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2589997542 1 1211 2234688888888777777654
No 36
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.0067 Score=58.05 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=75.7
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--------CCCCchhhhh
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL--------HFDPPQALEE 89 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--------h~~~P~~l~~ 89 (223)
|++=++.+|++|+|++-.=+.|.--||.+ |++|++|.-=..++|..+.+.|+-+++-+- +-++|.||..
T Consensus 51 W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 77779999999999999999999999998 999999987778899999999998777543 5677888865
Q ss_pred hhCCC----CChHhHHHHHHHHHHHHH
Q 046612 90 EYGGF----LSPKIVKDFVDYGDFCFK 112 (223)
Q Consensus 90 ~~gg~----~~~~~~~~f~~y~~~~~~ 112 (223)
. .|- .|+....+..+|.+.++.
T Consensus 128 ~-pg~~~Rt~nepfk~~~~~~~~~iv~ 153 (649)
T KOG0496|consen 128 V-PGIVFRTDNEPFKAEMERWTTKIVP 153 (649)
T ss_pred C-CceEEecCChHHHHHHHHHHHHHHH
Confidence 4 442 256678888888888877
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.89 E-value=0.011 Score=47.69 Aligned_cols=103 Identities=20% Similarity=0.344 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccc-----cCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhh
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRIL-----PKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEY 91 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~-----P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~ 91 (223)
+|+++++.|+++|++.+=+. |+... |..-..+.+.....+..+.+++.+.+.||++++.|+. -|.|.+.
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc--
Confidence 59999999999999998544 44432 2210002233344578999999999999999999963 4566552
Q ss_pred CCCCChH-hHHHHHHHHHHHHHHhCCC--cccEEeecCCc
Q 046612 92 GGFLSPK-IVKDFVDYGDFCFKTYGDR--VKLWASMNEPN 128 (223)
Q Consensus 92 gg~~~~~-~~~~f~~y~~~~~~~~~~~--v~~w~t~NEp~ 128 (223)
.+.+ -++.=..-++.+.++||.+ +..|-+=.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1221 2333344667888889885 55566666654
No 38
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.44 E-value=0.021 Score=58.42 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=64.9
Q ss_pred cccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCC
Q 046612 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg 93 (223)
....+++||++||++|+|++|+|. .|.. ..+.+.|-+.||-++--..-.+...+.... .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~sH-----yP~~--------------p~fydlcDe~GilV~dE~~~e~hg~~~~~~--~ 427 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCSH-----YPNH--------------PLWYELCDRYGLYVVDEANIETHGMVPMNR--L 427 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----CCCC--------------HHHHHHHHHcCCEEEEecCccccCCccccC--C
Confidence 345689999999999999999962 3432 344678889999988765311111110000 1
Q ss_pred CCChHhHHHHHHHHHHHHHHhCCC--cccEEeecCCc
Q 046612 94 FLSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPN 128 (223)
Q Consensus 94 ~~~~~~~~~f~~y~~~~~~~~~~~--v~~w~t~NEp~ 128 (223)
..+++..+.+.+=++.+++|.+++ |-.|.+.||+.
T Consensus 428 ~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 428 SDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 124566777777788999999987 88999999974
No 39
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.06 E-value=0.042 Score=56.18 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=63.8
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCC-
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGG- 93 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg- 93 (223)
...+++|+++||++|+|++|+|. .|.. ..+.+.|-+.||-++--..- ..+.|-. . ++
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~sH-----yP~~--------------~~fydlcDe~GllV~dE~~~-e~~g~~~-~-~~~ 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTAH-----YPND--------------PRFYELCDIYGLFVMAETDV-ESHGFAN-V-GDI 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC-----CCCC--------------HHHHHHHHHCCCEEEECCcc-cccCccc-c-ccc
Confidence 45789999999999999999962 4543 35567889999998875420 0011100 0 11
Q ss_pred -C--CChHhHHHHHHHHHHHHHHhCCC--cccEEeecCCc
Q 046612 94 -F--LSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPN 128 (223)
Q Consensus 94 -~--~~~~~~~~f~~y~~~~~~~~~~~--v~~w~t~NEp~ 128 (223)
+ .++...+.|.+=++.+++|.+++ |-.|.+-||..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 1 23445567777788999999987 88999999973
No 40
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.07 Score=53.13 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhh
Q 046612 12 SGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEY 91 (223)
Q Consensus 12 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~ 91 (223)
+-.+..+++|+++||++|+|++|.| =.|.. ..+.+.|-+.||-++=...... +
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~--------------~~~ydLcDelGllV~~Ea~~~~--------~ 369 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS--------------EEFYDLCDELGLLVIDEAMIET--------H 369 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC--------------HHHHHHHHHhCcEEEEecchhh--------c
Confidence 3344558999999999999999998 44553 4556688899999987654311 1
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhCCC--cccEEeecCCcc
Q 046612 92 GGFLSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPNG 129 (223)
Q Consensus 92 gg~~~~~~~~~f~~y~~~~~~~~~~~--v~~w~t~NEp~~ 129 (223)
++...++..+...+=+++.++|-++. |-.|.+-||...
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 33345556666677778889998876 889999999663
No 41
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=94.73 E-value=0.02 Score=53.26 Aligned_cols=109 Identities=24% Similarity=0.185 Sum_probs=78.9
Q ss_pred hHHHHHHHHHcCCCEEEecccc-cccccCCCCCCCCChhH-HHHHHHHHHHHHhCCCeeEEecC----CCCCchhhhhhh
Q 046612 18 YKEDIKLMKKVGLDSFRFSISW-TRILPKGKISGGVNPLG-VKFYKDLINELLANDIKPFVTLL----HFDPPQALEEEY 91 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W-~ri~P~~~~~g~~n~~~-l~~y~~~i~~l~~~gi~p~vtL~----h~~~P~~l~~~~ 91 (223)
-+.|+..++.+|++..|++|.= ..+-.. .|..|.+. +.+.+.+++.+...+|++++||. |++--.|...=.
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~d~---~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwa 104 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCRDK---EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWA 104 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchhhh---hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecC
Confidence 3468899999999999999532 222222 37778766 88999999999999999999986 322222211000
Q ss_pred CC------CCChHhHHHHHHHHHHHHHHhCCC--cccEEeecCCcc
Q 046612 92 GG------FLSPKIVKDFVDYGDFCFKTYGDR--VKLWASMNEPNG 129 (223)
Q Consensus 92 gg------~~~~~~~~~f~~y~~~~~~~~~~~--v~~w~t~NEp~~ 129 (223)
|+ ...+.....|.+|++.+++.|+.. +.-|+.-|||-+
T Consensus 105 g~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 105 GEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 11 224567788999999999999886 677999999766
No 42
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=94.46 E-value=0.062 Score=49.04 Aligned_cols=99 Identities=16% Similarity=0.232 Sum_probs=72.1
Q ss_pred HHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCC--hHhHHHH
Q 046612 26 KKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLS--PKIVKDF 103 (223)
Q Consensus 26 ~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~--~~~~~~f 103 (223)
+|+|++.+|.---|.-++-. --+++ .+++++++.+.+.|+.-+.+-.||..+.-....|.+=.. ....+.+
T Consensus 15 ~Ei~v~yi~~~~v~h~~~q~----~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~ 87 (428)
T COG3664 15 DEIQVNYIRRHGVWHVNAQK----LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLI 87 (428)
T ss_pred hhhceeeehhcceeeeeecc----ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHH
Confidence 68999999998888833222 35677 789999999999995555566677776544433333222 2478999
Q ss_pred HHHHHHHHHHhCCC-cccE--EeecCCcccc
Q 046612 104 VDYGDFCFKTYGDR-VKLW--ASMNEPNGMV 131 (223)
Q Consensus 104 ~~y~~~~~~~~~~~-v~~w--~t~NEp~~~~ 131 (223)
+.+++.|+.+||-+ |.-| .++||||..+
T Consensus 88 ~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 88 AAFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHHhChhheeecceeecCCCCccc
Confidence 99999999999975 4444 5999999864
No 43
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.86 E-value=3 Score=37.05 Aligned_cols=103 Identities=16% Similarity=0.314 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCC----C-CCCCChhHHHHHHHHHHHHHhCCCeeEEecC---CCCCchhhhhh
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGK----I-SGGVNPLGVKFYKDLINELLANDIKPFVTLL---HFDPPQALEEE 90 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~----~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---h~~~P~~l~~~ 90 (223)
++-++.+|+.|+|.+|+-| |- -|..+ . .|.-|. +.--++-+.++..||+++++.| ||.=|.- +.+
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wn--dP~dsngn~yggGnnD~---~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~k 138 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WN--DPYDSNGNGYGGGNNDL---KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKK 138 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ec--CCccCCCCccCCCcchH---HHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCC
Confidence 4447999999999999976 32 12211 0 022233 4446677888999999999997 3444543 112
Q ss_pred hCCCCC---hHhHHHHHHHHHHHHHHh---CCCcccEEeecCCc
Q 046612 91 YGGFLS---PKIVKDFVDYGDFCFKTY---GDRVKLWASMNEPN 128 (223)
Q Consensus 91 ~gg~~~---~~~~~~f~~y~~~~~~~~---~~~v~~w~t~NEp~ 128 (223)
-..|.+ +....+.-+|.+.+...+ |-..+.-.+=||-+
T Consensus 139 PkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 139 PKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETN 182 (403)
T ss_pred cHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccC
Confidence 134654 223344445555555555 44566667889966
No 44
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=93.03 E-value=0.62 Score=41.37 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
..+.|+.+|++||+|++|+= -|-|+. -.|+-++.|.++||-++++|.-
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~------------nHd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK------------NHDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS--------------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC------------CHHHHHHHHHhCCCEEEEecCC
Confidence 57889999999999999983 233432 2488899999999999999964
No 45
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.84 E-value=6.5 Score=34.84 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHcCCCEEEecccc-------cccccCCC-CCCCC-ChhHHHHHHHHHHHHHhCCCeeEEec----CC---
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISW-------TRILPKGK-ISGGV-NPLGVKFYKDLINELLANDIKPFVTL----LH--- 80 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W-------~ri~P~~~-~~g~~-n~~~l~~y~~~i~~l~~~gi~p~vtL----~h--- 80 (223)
..++-++.|+++|+|++=+.+.+ |.++|... ..|.. ...+.+-+..+|+++.++||++..-+ -.
T Consensus 20 ~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~ 99 (311)
T PF02638_consen 20 QIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV 99 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCch
Confidence 35677899999999998776644 44455320 00111 11245678999999999999987543 10
Q ss_pred ----CCCchhhhhh-------h----CC--CC---ChHhHHHHHHHHHHHHHHhC
Q 046612 81 ----FDPPQALEEE-------Y----GG--FL---SPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 81 ----~~~P~~l~~~-------~----gg--~~---~~~~~~~f~~y~~~~~~~~~ 115 (223)
-..|.|+..+ + ++ |. +|++.+...+-++.++++|.
T Consensus 100 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 100 SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1235664311 1 21 44 46888999999999999994
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=91.65 E-value=0.64 Score=37.38 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=45.4
Q ss_pred CcccChHHHHHHHHHcCCCEEEeccccccccc--CCCCCC-----CCC--hhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILP--KGKISG-----GVN--PLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P--~~~~~g-----~~n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+....+-++.+++||++++-++--++.... ...--. .++ .-..+-++++|++|.++||++|+++.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34556777788999999999998865544431 100000 111 12245689999999999999999874
No 47
>PLN02361 alpha-amylase
Probab=88.23 E-value=1.2 Score=40.98 Aligned_cols=64 Identities=13% Similarity=0.260 Sum_probs=45.7
Q ss_pred CcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCC-----Ch--hHHHHHHHHHHHHHhCCCeeEEec
Q 046612 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGV-----NP--LGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~-----n~--~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
.+|....+-++.+++||++++=++-.....-+.+ -... |. -..+=++++|++|.++||++|+++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~G--Y~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEG--YLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCC--CCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 3677888999999999999998886554433322 0111 11 123457999999999999999975
No 48
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=88.11 E-value=4.8 Score=35.74 Aligned_cols=87 Identities=20% Similarity=0.377 Sum_probs=61.9
Q ss_pred ccChHHHHHHHHHcCCCEEEec-c--cccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhh
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFS-I--SWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEY 91 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~s-i--~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~ 91 (223)
..||.+-.+++++.|+|.+=+. + .-..| ..+.++.+.++-+.++.+||++.+++. |..|.-+
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~L----------t~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l---- 120 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLL----------TPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL---- 120 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGG----------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhc----------CHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----
Confidence 3578888999999999998764 1 22222 234567788999999999999999996 8888643
Q ss_pred CC-----CCChHhHHHHHHHHHHHHHHhCC
Q 046612 92 GG-----FLSPKIVKDFVDYGDFCFKTYGD 116 (223)
Q Consensus 92 gg-----~~~~~~~~~f~~y~~~~~~~~~~ 116 (223)
|| -.+++++.+|.+=++.+.++.-|
T Consensus 121 ggL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 121 GGLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp TS-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CCcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 44 35788999999999999888755
No 49
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.54 E-value=4.1 Score=40.39 Aligned_cols=97 Identities=9% Similarity=0.118 Sum_probs=55.9
Q ss_pred HHHH-HHHHHcCCCEEEecccccc-------cccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--CCCCc----
Q 046612 19 KEDI-KLMKKVGLDSFRFSISWTR-------ILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL--HFDPP---- 84 (223)
Q Consensus 19 ~eDi-~l~~~lG~~~~R~si~W~r-------i~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~~P---- 84 (223)
.+.+ +.+++||++++=+.=-... -.|.....=....-..+=++++|++|.++||++|+++. |+...
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~ 347 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGL 347 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccch
Confidence 3453 7889999999987642211 11110000000111234579999999999999999953 54221
Q ss_pred -------hhhhh-----hhCC-------CCChHhHHHHHHHHHHHHHHhC
Q 046612 85 -------QALEE-----EYGG-------FLSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 85 -------~~l~~-----~~gg-------~~~~~~~~~f~~y~~~~~~~~~ 115 (223)
.+... .+.. +.++++.+.+.+-++.-+++|+
T Consensus 348 ~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 348 ARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred hccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 11110 0112 3467888888888888887764
No 50
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=86.78 E-value=1.5 Score=37.27 Aligned_cols=58 Identities=19% Similarity=0.371 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCC--C-----C--ChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISG--G-----V--NPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g--~-----~--n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
.+-++.+++||++++-++=-+. .|... .| . + ..-..+=++++|++|.++||++|+++.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--ccccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4568899999999999986554 22110 01 1 1 122356689999999999999999864
No 51
>PLN00196 alpha-amylase; Provisional
Probab=86.57 E-value=1.4 Score=40.97 Aligned_cols=63 Identities=10% Similarity=0.164 Sum_probs=43.7
Q ss_pred cccChHHHHHHHHHcCCCEEEecccccccccCCCCCCC-----CC---hhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGG-----VN---PLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~-----~n---~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
+|....+.++.+++||++++=++-.....-+.+ -.. +| .-.-+=++++|+++.++||++|+++
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hG--Y~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQG--YMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC--CCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 455567889999999999999986554332222 011 11 1112448999999999999999984
No 52
>PRK12313 glycogen branching enzyme; Provisional
Probab=86.53 E-value=4.7 Score=39.26 Aligned_cols=90 Identities=14% Similarity=0.239 Sum_probs=56.7
Q ss_pred hHHH-HHHHHHcCCCEEEeccccc---------------ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--
Q 046612 18 YKED-IKLMKKVGLDSFRFSISWT---------------RILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-- 79 (223)
Q Consensus 18 ~~eD-i~l~~~lG~~~~R~si~W~---------------ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-- 79 (223)
..+. ++.+++||++++=+.=-.. .+.|.- |. .+=++++|++|.++||++|+++.
T Consensus 172 ~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---Gt-----~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 172 LADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---GT-----PEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred HHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---CC-----HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4456 4899999999998663221 111111 22 34579999999999999999854
Q ss_pred CCCCch----hhh--------h---h-hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 046612 80 HFDPPQ----ALE--------E---E-YGGF-------LSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 80 h~~~P~----~l~--------~---~-~gg~-------~~~~~~~~f~~y~~~~~~~~~ 115 (223)
|..... ++. + . +.+| .++++.+.+.+-++.-++.|+
T Consensus 244 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 244 HFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 543211 110 0 0 0123 367888888888888787764
No 53
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=86.37 E-value=2.3 Score=37.19 Aligned_cols=67 Identities=9% Similarity=0.061 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
+-+.|++.+.+.|++.+++.++=|...-.... +.--.+.++.+.++++.+++.|+++.+++-+|+.|
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~-~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQL-RKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 44679999999999999999865554443211 33346788999999999999999999999887754
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=86.34 E-value=3.4 Score=32.01 Aligned_cols=54 Identities=11% Similarity=0.213 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCCEEEecc------cc--cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 20 EDIKLMKKVGLDSFRFSI------SW--TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 20 eDi~l~~~lG~~~~R~si------~W--~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
+=++.++++|+|++-+.. +| +++.+.- ..+. -+.+.++|+.|+++||++++=+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~h---p~L~---~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRH---PGLK---RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCC---CCCC---cCHHHHHHHHHHHCCCEEEEEEe
Confidence 346899999999999932 22 2332221 1223 37789999999999999998554
No 55
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=5.4 Score=37.66 Aligned_cols=113 Identities=17% Similarity=0.331 Sum_probs=72.4
Q ss_pred ccChHHHHHHHHHcCCCEEEec----ccccccccCCCC--------------------------CCCCCh----hHHHHH
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFS----ISWTRILPKGKI--------------------------SGGVNP----LGVKFY 60 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~s----i~W~ri~P~~~~--------------------------~g~~n~----~~l~~y 60 (223)
|.+|+..|+.|+-.|+|..=.. +-|.+|+-.-.. .|.+.+ .-+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 4589999999999999976533 246655443200 133322 123344
Q ss_pred HHHHHHHHhCCCeeEEecCCCCCchhhhhhh--------CCCC---------------ChHhHHHHHHHHHHHHHHhCCC
Q 046612 61 KDLINELLANDIKPFVTLLHFDPPQALEEEY--------GGFL---------------SPKIVKDFVDYGDFCFKTYGDR 117 (223)
Q Consensus 61 ~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~--------gg~~---------------~~~~~~~f~~y~~~~~~~~~~~ 117 (223)
+++|+.+++-||+|++--+---.|..|..-| +.|. .|-+.+-=..|-+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 7899999999999999887666787775433 2332 2224444456677888999973
Q ss_pred cccE--EeecCC
Q 046612 118 VKLW--ASMNEP 127 (223)
Q Consensus 118 v~~w--~t~NEp 127 (223)
-..+ -||||-
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 3323 388884
No 56
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=84.53 E-value=8.6 Score=33.81 Aligned_cols=105 Identities=16% Similarity=0.163 Sum_probs=68.5
Q ss_pred HHHHHHHHHcC--CCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC---chh-------
Q 046612 19 KEDIKLMKKVG--LDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP---PQA------- 86 (223)
Q Consensus 19 ~eDi~l~~~lG--~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~------- 86 (223)
.+-++.+++.| ++++=+.+.|..-. + +=.+|.+..---.++++.|+++|+++++.+.=+-. +..
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~--g--~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCY--G--DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccC--C--ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 34467788888 46888888885431 1 12344444444689999999999999887653211 111
Q ss_pred --hhhhhC----------------CCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCc
Q 046612 87 --LEEEYG----------------GFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 87 --l~~~~g----------------g~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
+.+.-| .+.||+..+.|.+..+.+....|= --+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 111001 156899999999988888877653 34477899996
No 57
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=84.47 E-value=5.2 Score=35.96 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=49.2
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHH
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVK 101 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~ 101 (223)
|++|.+.|++-+=.|+ +.|++ .+...++.+.++++.+.+.|+++||++. |.-|.. -|| +...++
T Consensus 22 i~~~~~~Gf~~IFtsl----~~~~~-----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~-S~~~l~ 85 (360)
T COG3589 22 IDRMHKYGFKRIFTSL----LIPEE-----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNI-SLDNLS 85 (360)
T ss_pred HHHHHHcCccceeeec----ccCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCC-ChHHHH
Confidence 6888999998777665 33443 3346789999999999999999999995 887664 344 233344
Q ss_pred HHHHH
Q 046612 102 DFVDY 106 (223)
Q Consensus 102 ~f~~y 106 (223)
.|.+.
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 44444
No 58
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=84.38 E-value=2.9 Score=37.71 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCC-CCCC-CChhHHHHHHHHHHHHHhCCCe-eEEecCCCCCchhhhhhhCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGK-ISGG-VNPLGVKFYKDLINELLANDIK-PFVTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g~-~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg 93 (223)
.-++.++.|+++|++. +||.-..+-++-- .-|+ .+ .+-+.+.|+.+++.|+. +-+++. +++|.
T Consensus 97 ~t~e~l~~l~~~G~~r--vsiGvqS~~d~~L~~l~R~~~---~~~~~~ai~~l~~~g~~~v~~dli-~GlPg-------- 162 (374)
T PRK05799 97 FTEEKLKILKSMGVNR--LSIGLQAWQNSLLKYLGRIHT---FEEFLENYKLARKLGFNNINVDLM-FGLPN-------- 162 (374)
T ss_pred CCHHHHHHHHHcCCCE--EEEECccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEee-cCCCC--------
Confidence 4568899999999995 5554444433210 0032 23 35568889999999997 446664 56662
Q ss_pred CCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCC
Q 046612 94 FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGG 138 (223)
Q Consensus 94 ~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g 138 (223)
++.+.|.+-.+.+.+.=-+.|..+...-+|+.....-+..|
T Consensus 163 ----qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g 203 (374)
T PRK05799 163 ----QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENG 203 (374)
T ss_pred ----CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcC
Confidence 23455555555554432255666665557775433333334
No 59
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.16 E-value=7 Score=37.41 Aligned_cols=91 Identities=15% Similarity=0.361 Sum_probs=54.9
Q ss_pred hHHHHHHHHHcCCCEEEeccc--ccc-----------cccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--CCC
Q 046612 18 YKEDIKLMKKVGLDSFRFSIS--WTR-----------ILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL--HFD 82 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~--W~r-----------i~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~ 82 (223)
..+-++.+++||++++-+.-- .+. ..|++.. | ..+=++++|++|.++||++|+++. |.+
T Consensus 113 i~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G-----~~~e~k~lV~~aH~~Gi~VilD~V~NH~~ 186 (542)
T TIGR02402 113 AIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-G-----GPDDLKALVDAAHGLGLGVILDVVYNHFG 186 (542)
T ss_pred HHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-C-----CHHHHHHHHHHHHHCCCEEEEEEccCCCC
Confidence 445689999999999987631 110 0111110 2 235579999999999999999854 532
Q ss_pred C---------chhhhhh-hCCC------CCh---HhHHHHHHHHHHHHHHhC
Q 046612 83 P---------PQALEEE-YGGF------LSP---KIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 83 ~---------P~~l~~~-~gg~------~~~---~~~~~f~~y~~~~~~~~~ 115 (223)
. | |+... ..+| .++ ++.+.+.+-++.-++.|+
T Consensus 187 ~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 187 PEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 1 2 33211 1233 244 666777777776666654
No 60
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.18 E-value=4.7 Score=34.09 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
+++++.+++.|++.+|++++-+.+.-... -+.=..+.++...+.++.+++.|+++.+.+..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKN-LNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 89999999999999999998764211110 01112345677889999999999999998853
No 61
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=82.03 E-value=2.4 Score=39.68 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=42.8
Q ss_pred cccChHHHHHHHHHcCCCEEEeccccccc--------ccCCCC-------CCCCCh--hHHHHHHHHHHHHHhCCCeeEE
Q 046612 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRI--------LPKGKI-------SGGVNP--LGVKFYKDLINELLANDIKPFV 76 (223)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri--------~P~~~~-------~g~~n~--~~l~~y~~~i~~l~~~gi~p~v 76 (223)
.|..-.+-++.+++||++++=++-...-. .|..-. .|.+|. -..+=++++|++|.++||++|+
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 34445677899999999999888543322 111100 011221 1234579999999999999999
Q ss_pred ecC
Q 046612 77 TLL 79 (223)
Q Consensus 77 tL~ 79 (223)
++.
T Consensus 100 D~V 102 (479)
T PRK09441 100 DVV 102 (479)
T ss_pred EEC
Confidence 853
No 62
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=81.89 E-value=11 Score=36.58 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=57.0
Q ss_pred HHHH-HHHHHcCCCEEEec-cccccc------ccCCCCCCCC--ChhHHHHHHHHHHHHHhCCCeeEEecC--CCCC---
Q 046612 19 KEDI-KLMKKVGLDSFRFS-ISWTRI------LPKGKISGGV--NPLGVKFYKDLINELLANDIKPFVTLL--HFDP--- 83 (223)
Q Consensus 19 ~eDi-~l~~~lG~~~~R~s-i~W~ri------~P~~~~~g~~--n~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~~--- 83 (223)
.+.+ +.+++||++++=+. |....- .|..- -.+ ..-..+=++++|++|.++||++|+++. |...
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y--~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~ 236 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY--YAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDH 236 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC--cccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccc
Confidence 3454 88999999999984 433210 00000 000 011124579999999999999999865 5421
Q ss_pred --------chhhhhh-----hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 046612 84 --------PQALEEE-----YGGF-------LSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 84 --------P~~l~~~-----~gg~-------~~~~~~~~f~~y~~~~~~~~~ 115 (223)
|.+.... +..| .++++.+.+.+-++..+++|+
T Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 237 GLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred hhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111100 0112 357888888888888888875
No 63
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=81.68 E-value=2.3 Score=36.43 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=47.4
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-++|++...+.|++.+|+.++.+.+.=.... +.-.++.++...++++.+++.|+++.+++.
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 4789999999999999999988766432111 333356788899999999999999886664
No 64
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=81.50 E-value=11 Score=33.46 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCC-EEEeccc-c-cccc-cCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCC
Q 046612 19 KEDIKLMKKVGLD-SFRFSIS-W-TRIL-PKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGF 94 (223)
Q Consensus 19 ~eDi~l~~~lG~~-~~R~si~-W-~ri~-P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~ 94 (223)
++.+++|+++|++ .+=++++ - .++. ..-. .| .+. +-+.+.++.++++||.+.+.+. +++|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~in-Kg-~t~---~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSIN-KG-STF---EDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhC-CC-CCH---HHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 7889999999988 4555552 1 1122 1100 12 233 5678999999999999877764 45551 1
Q ss_pred CChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCCC
Q 046612 95 LSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAP 142 (223)
Q Consensus 95 ~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~p 142 (223)
...++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223677888777777664 45778877766677765545566677655
No 65
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=81.40 E-value=2.6 Score=40.24 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=42.5
Q ss_pred CcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCC--------C--hhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGV--------N--PLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~--------n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
.-+.-..+-++.+++||++++=++--... |.. ...+ | .-..+-++++|++|.++||++|+++.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~--~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVS--PQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccC--CCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34445667789999999999987643322 111 0011 1 12245679999999999999999854
No 66
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=81.34 E-value=0.82 Score=32.62 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=13.7
Q ss_pred HHHHhCC--CcccEEeecC-Cc
Q 046612 110 CFKTYGD--RVKLWASMNE-PN 128 (223)
Q Consensus 110 ~~~~~~~--~v~~w~t~NE-p~ 128 (223)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567776 5999999999 65
No 67
>PRK05474 xylose isomerase; Provisional
Probab=81.25 E-value=47 Score=30.97 Aligned_cols=88 Identities=15% Similarity=0.259 Sum_probs=53.5
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHH----HHHhCCCe-eEEecCCCCCchhhhhhhCCCC
Q 046612 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLIN----ELLANDIK-PFVTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~----~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~~ 95 (223)
-++.|.+||+..|=|- =..|.|++ ..+. +..+..+++++ .+.+.||+ +++|..-|+.|.... |+.+
T Consensus 84 afe~~~kLg~~~~~FH--D~D~~peg---~s~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~T 154 (437)
T PRK05474 84 AFEFFTKLGVPYYCFH--DVDVAPEG---ASLK-EYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAAT 154 (437)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCC---CCHH-HHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCC
Confidence 3567999999987553 34577775 2222 23234455544 45678998 566888899998754 8899
Q ss_pred ChH--hHHHHHHHHHH---HHHHhCCC
Q 046612 96 SPK--IVKDFVDYGDF---CFKTYGDR 117 (223)
Q Consensus 96 ~~~--~~~~f~~y~~~---~~~~~~~~ 117 (223)
||+ +...=.+-++. +.+++|..
T Consensus 155 npd~~Vra~A~~qvk~alD~~~eLGge 181 (437)
T PRK05474 155 NPDPDVFAYAAAQVKTALDATKRLGGE 181 (437)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 875 22222222222 35677764
No 68
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=80.86 E-value=48 Score=30.84 Aligned_cols=68 Identities=19% Similarity=0.363 Sum_probs=44.9
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHH----HHHhCCCe-eEEecCCCCCchhhhhhhCCCCC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLIN----ELLANDIK-PFVTLLHFDPPQALEEEYGGFLS 96 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~----~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~~~ 96 (223)
++.|.+||+..|=|- =..|.|++ ..+. +..+..+++++ .+.+.||+ +++|..-|+.|.+.. |+.+|
T Consensus 84 Fef~~kLg~~~~~FH--D~D~~peg---~~~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tn 154 (434)
T TIGR02630 84 FEFFEKLGVPYYCFH--DRDIAPEG---ASLR-ETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATS 154 (434)
T ss_pred HHHHHHhCCCeeccC--ccccCCCC---CCHH-HHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCC
Confidence 566899999987553 35677875 2222 22233344444 45688998 566788899998754 88998
Q ss_pred hH
Q 046612 97 PK 98 (223)
Q Consensus 97 ~~ 98 (223)
|+
T Consensus 155 Pd 156 (434)
T TIGR02630 155 PD 156 (434)
T ss_pred CC
Confidence 75
No 69
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=80.69 E-value=10 Score=33.33 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHHHcCCCEEEeccc--ccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 23 KLMKKVGLDSFRFSIS--WTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 23 ~l~~~lG~~~~R~si~--W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
+.+.+.|++++-+++- -....|.- .|.............|..|+++|++++|.+--+.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w--~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~ 78 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW--GGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGAS 78 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC--CCCCCcccchhHHHHHHHHHHcCCeEEEEecCCC
Confidence 5778899999998753 22223321 1211111124457789999999999999886544
No 70
>PLN02784 alpha-amylase
Probab=80.60 E-value=4.2 Score=40.96 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=46.3
Q ss_pred CcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCC-----Ch--hHHHHHHHHHHHHHhCCCeeEEec
Q 046612 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGV-----NP--LGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~-----n~--~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
.+|....+.++.+++||++++=++-.-....+.| .... |. -..+=++.+|+.|.++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~G--Y~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEG--YMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCC--cCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4677888999999999999998886544443332 1111 11 123457999999999999999984
No 71
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=80.44 E-value=5.8 Score=35.84 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
.-.+|++.+.++|++.+.+.++=|...=.... +.--.+.++.+.++++.++++|+++.+++.
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 36899999999999999999876665444311 344567899999999999999999976664
No 72
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=80.34 E-value=7.2 Score=34.17 Aligned_cols=62 Identities=5% Similarity=-0.021 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
.-.+|+++..+.|++.+++.++=|...-... -+.--.+.++...++|+.++++|+++..++.
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n-~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKN-INCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 4689999999999999999986654432221 1333456788999999999999999886655
No 73
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=80.17 E-value=3 Score=40.01 Aligned_cols=61 Identities=11% Similarity=0.318 Sum_probs=41.9
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCC--------C--hhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGV--------N--PLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~--------n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
+.-..+.++.+++||++++=++--+.. |.. +..+ | .-..+-++++|+++.++||++|+++.
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~--~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQV--DNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCC--CCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 444567899999999999988753321 211 0111 1 11235689999999999999999864
No 74
>PRK14705 glycogen branching enzyme; Provisional
Probab=79.76 E-value=12 Score=39.29 Aligned_cols=93 Identities=13% Similarity=0.192 Sum_probs=54.5
Q ss_pred HHHHHHcCCCEEEecc--------cccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--CCCCchhhhhhh
Q 046612 22 IKLMKKVGLDSFRFSI--------SWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL--HFDPPQALEEEY 91 (223)
Q Consensus 22 i~l~~~lG~~~~R~si--------~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~~P~~l~~~~ 91 (223)
++.+|+||++++=+.= +|- -.|..-..-....-..+=++.+|++|.++||.+|+++. |+..=.|....+
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 6899999999997652 231 11111000000011234479999999999999999854 542111110000
Q ss_pred ----------------CC-------CCChHhHHHHHHHHHHHHHHhC
Q 046612 92 ----------------GG-------FLSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 92 ----------------gg-------~~~~~~~~~f~~y~~~~~~~~~ 115 (223)
.. +.++++.+.+.+-+..-+++|+
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11 2356777888888888888774
No 75
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=79.64 E-value=11 Score=32.90 Aligned_cols=102 Identities=13% Similarity=0.121 Sum_probs=63.9
Q ss_pred cCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC------Cc
Q 046612 11 ASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD------PP 84 (223)
Q Consensus 11 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~------~P 84 (223)
+.-.+..+++=|+..+++|+..+=+.-.|+.-.+... .+......-....++++..+++|+.++|-.++-+ +=
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~-~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~ 105 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDD-FDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLE 105 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT---TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecccccccccccc-ccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHH
Confidence 3446678899999999999999999999997332210 0111111113469999999999999999998754 11
Q ss_pred hhhhh---hh---C------CC---CChHhHHHHHHHHHHHHHH
Q 046612 85 QALEE---EY---G------GF---LSPKIVKDFVDYGDFCFKT 113 (223)
Q Consensus 85 ~~l~~---~~---g------g~---~~~~~~~~f~~y~~~~~~~ 113 (223)
.-+.+ .| | |+ .+.+.+..+.+.++.++++
T Consensus 106 ~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 106 KQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 00111 11 1 12 3456889999999988875
No 76
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=79.46 E-value=3.6 Score=35.61 Aligned_cols=61 Identities=11% Similarity=0.112 Sum_probs=46.8
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-.+|++.+.+.|++.+|+.++=|...-.... +.=-.+.++...++++.++++|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~-~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASH-GKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4779999999999999998865543332110 222356789999999999999999999874
No 77
>PRK09505 malS alpha-amylase; Reviewed
Probab=78.88 E-value=4 Score=40.19 Aligned_cols=62 Identities=15% Similarity=0.281 Sum_probs=41.1
Q ss_pred hHHHHHHHHHcCCCEEEecccccccc-----------cCCCCCC-------CCC--hhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRIL-----------PKGKISG-------GVN--PLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------P~~~~~g-------~~n--~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
..+-++.+++||++++=++--...+. |.-..-| .+| .-..+=++++|+++.++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45568899999999999885444431 1000001 112 123456899999999999999998
Q ss_pred cC
Q 046612 78 LL 79 (223)
Q Consensus 78 L~ 79 (223)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 54
No 78
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=78.57 E-value=8.7 Score=36.15 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=41.8
Q ss_pred cccChHHH-----HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 14 FYHHYKED-----IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 14 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
.|..|++| +++.++.|++.+|+.-.. |. ++-....|+.+++.|..+.+++.+=+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~l-------------nd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDAL-------------ND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccC-------------CC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 57788999 899999999999986432 21 2445777788888888877777765555
No 79
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=78.53 E-value=4.7 Score=39.77 Aligned_cols=58 Identities=22% Similarity=0.418 Sum_probs=40.1
Q ss_pred HHHHHHcCCCEEEe----cccccccccCCCCC--------------CCC--Ch---hHHHHHHHHHHHHHhCCCeeEEec
Q 046612 22 IKLMKKVGLDSFRF----SISWTRILPKGKIS--------------GGV--NP---LGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 22 i~l~~~lG~~~~R~----si~W~ri~P~~~~~--------------g~~--n~---~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
|+.+|+||++++.+ ++...+-.+..... |.+ +. ..+.=++++|++|.++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999994 34444444321000 111 12 247778999999999999999986
Q ss_pred C
Q 046612 79 L 79 (223)
Q Consensus 79 ~ 79 (223)
.
T Consensus 286 V 286 (697)
T COG1523 286 V 286 (697)
T ss_pred e
Confidence 4
No 80
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=78.50 E-value=9.9 Score=35.42 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCC-ChhHHHHHHHHHHHHHhCC-CeeEEecCCCCCchhhhhhhC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGV-NPLGVKFYKDLINELLAND-IKPFVTLLHFDPPQALEEEYG 92 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~-n~~~l~~y~~~i~~l~~~g-i~p~vtL~h~~~P~~l~~~~g 92 (223)
.-+|.+++|+++|+|.+-+++ |-+ .+...- |+. +. +-..+.|+.+++.| +.+.++|. +++|.
T Consensus 161 ~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~~~---~~~~~~i~~l~~~g~~~v~~DlI-~GlPg------- 226 (449)
T PRK09058 161 FDDEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKDDR---EEVLARLEELVARDRAAVVCDLI-FGLPG------- 226 (449)
T ss_pred CCHHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCCCH---HHHHHHHHHHHhCCCCcEEEEEE-eeCCC-------
Confidence 357889999999999888887 332 222221 322 23 44577889999999 67888886 67772
Q ss_pred CCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCCC
Q 046612 93 GFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSFA 141 (223)
Q Consensus 93 g~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~ 141 (223)
++.+.|.+=.+.+.+-=-+.|..+...-+|+......+..|..+
T Consensus 227 -----qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 -----QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred -----CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 12334444444444322356888888888886544434445544
No 81
>PRK10785 maltodextrin glucosidase; Provisional
Probab=78.36 E-value=4.4 Score=39.20 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCC--------Ch--hHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGV--------NP--LGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~--------n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-.+-++.+++||++++=++--. +.+. .-.+ |+ -..+=+++++++|.++||++|+++.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif----~s~s-~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIF----TAPS-VHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcc----cCCC-CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3455799999999999887422 2211 0111 11 1234579999999999999999864
No 82
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=77.87 E-value=9.1 Score=36.03 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=41.0
Q ss_pred cccChHHH-----HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 14 FYHHYKED-----IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 14 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
.|..|++| ++...+.|++.+|+..+-+.+ +-....++.+++.|+.+..++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI---------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH---------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 46668888 899999999999998865432 335667788888888877666543334
No 83
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=77.30 E-value=10 Score=36.79 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=34.8
Q ss_pred cccChHHH-----HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 14 FYHHYKED-----IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 14 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-|.+|++| ++..++.|++.+|+..+.+.+ +.....|+.+++.|....+++.
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~---------------~~~~~ai~~ak~~G~~~~~~i~ 145 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP---------------RNLETALKAVRKVGAHAQGTLS 145 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH---------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 46677777 899999999999999654332 2345556666666666544443
No 84
>PRK03705 glycogen debranching enzyme; Provisional
Probab=76.70 E-value=7 Score=38.39 Aligned_cols=55 Identities=15% Similarity=0.340 Sum_probs=37.2
Q ss_pred HHHHHHcCCCEEEeccc-----------------c-------cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 22 IKLMKKVGLDSFRFSIS-----------------W-------TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~-----------------W-------~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
++.+++||++++=+.=- | -.+.|.= |.-....++=++++|++|.++||++|++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y---gt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY---ASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc---CCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 89999999999987521 1 1122211 2111123566899999999999999998
Q ss_pred cC
Q 046612 78 LL 79 (223)
Q Consensus 78 L~ 79 (223)
+.
T Consensus 262 vV 263 (658)
T PRK03705 262 VV 263 (658)
T ss_pred Ec
Confidence 54
No 85
>PRK14706 glycogen branching enzyme; Provisional
Probab=76.60 E-value=14 Score=36.10 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=52.3
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCCC---C-------hhHHHHHHHHHHHHHhCCCeeEEecC--CCC--------
Q 046612 23 KLMKKVGLDSFRFSISWTRILPKGKISGGV---N-------PLGVKFYKDLINELLANDIKPFVTLL--HFD-------- 82 (223)
Q Consensus 23 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~---n-------~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~-------- 82 (223)
+.+|+||++++-+.--=. .|... .--+ + .-..+=++.+|++|.++||++|+++. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e--~~~~~-~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 175 EYVTYMGYTHVELLGVME--HPFDG-SWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHcCCCEEEccchhc--CCCCC-CCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 678999999987652100 11110 0001 1 11134479999999999999999854 432
Q ss_pred ---Cchh-hhhhhCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 046612 83 ---PPQA-LEEEYGG----F-------LSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 83 ---~P~~-l~~~~gg----~-------~~~~~~~~f~~y~~~~~~~~~ 115 (223)
.|.+ ..+...| | .++++.+.+.+-++.-++.|+
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0000011 2 257788888888888888774
No 86
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=76.56 E-value=4.2 Score=36.85 Aligned_cols=107 Identities=13% Similarity=-0.010 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC--Cchhhhhh----
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD--PPQALEEE---- 90 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~--~P~~l~~~---- 90 (223)
-.++|++.+.+.|++.+|+.++-|.+.-.... +.-..+.++...+.++.+++.|+++.+++-..+ -|..+.+-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~ 150 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRA 150 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHH
Confidence 46899999999999999998877766433110 323356778889999999999999988875422 12322110
Q ss_pred --h----------CCCCChHhHHHHHHHHHHHHHHhCCCccc-EEeecCCcc
Q 046612 91 --Y----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKL-WASMNEPNG 129 (223)
Q Consensus 91 --~----------gg~~~~~~~~~f~~y~~~~~~~~~~~v~~-w~t~NEp~~ 129 (223)
. -|-.. ++.+.++.+.+.++++ +.. +..-|-..+
T Consensus 151 ~~~g~~~i~l~DT~G~~~---P~~v~~li~~l~~~~~--~~l~~H~Hnd~Gl 197 (363)
T TIGR02090 151 EEAGADRINIADTVGVLT---PQKMEELIKKLKENVK--LPISVHCHNDFGL 197 (363)
T ss_pred HhCCCCEEEEeCCCCccC---HHHHHHHHHHHhcccC--ceEEEEecCCCCh
Confidence 1 13333 4556666666666664 333 446666554
No 87
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=76.15 E-value=4.4 Score=38.64 Aligned_cols=59 Identities=15% Similarity=0.300 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCC--------CCCh--hHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISG--------GVNP--LGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g--------~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-..+-++.+++||++++=++--. +.+..+. .+|+ -..+=++++|+++.++||++|+++.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~----~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFF----QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCc----CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45566899999999999877422 2210001 1121 1235689999999999999999853
No 88
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=75.82 E-value=9.8 Score=34.42 Aligned_cols=107 Identities=15% Similarity=0.053 Sum_probs=68.3
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC--chhhhh------
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP--PQALEE------ 89 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~--P~~l~~------ 89 (223)
-++|++.+.+.|++.+|+.++-|.+.=.... +.-..+.++...+.|+.++++|+++.+++-..+- |..+.+
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~ 152 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAA 152 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 4899999999999999999987754333110 2223567888999999999999998887654321 222211
Q ss_pred hh----------CCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcc
Q 046612 90 EY----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (223)
Q Consensus 90 ~~----------gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~ 129 (223)
+. -|... +..+.++++.+.++++-.+ -+.+-|-..+
T Consensus 153 ~~Ga~~i~l~DT~G~~~---P~~v~~lv~~l~~~~~v~l-~~H~HNd~Gl 198 (365)
T TIGR02660 153 EAGADRFRFADTVGILD---PFSTYELVRALRQAVDLPL-EMHAHNDLGM 198 (365)
T ss_pred HcCcCEEEEcccCCCCC---HHHHHHHHHHHHHhcCCeE-EEEecCCCCh
Confidence 01 13333 4566666677777764222 2556666654
No 89
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=75.58 E-value=7 Score=38.98 Aligned_cols=96 Identities=8% Similarity=0.104 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCEEEecccccccc-------cCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC--CCC-------
Q 046612 20 EDIKLMKKVGLDSFRFSISWTRIL-------PKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH--FDP------- 83 (223)
Q Consensus 20 eDi~l~~~lG~~~~R~si~W~ri~-------P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h--~~~------- 83 (223)
+-++.+++||++++=+.--...-. |.....-.......+-++++|++|.++||++|+++.+ ..-
T Consensus 255 ~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~ 334 (758)
T PLN02447 255 DVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLN 334 (758)
T ss_pred HHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccccccccccccc
Confidence 348999999999998764322110 0000000000111244799999999999999999764 211
Q ss_pred ------chhhhhhhCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 046612 84 ------PQALEEEYGG----F-------LSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 84 ------P~~l~~~~gg----~-------~~~~~~~~f~~y~~~~~~~~~ 115 (223)
+.|+.....| | .++++...+.+-++.-+++|+
T Consensus 335 ~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 335 GFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred ccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222211011 2 246677777777777777763
No 90
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=75.33 E-value=9.6 Score=32.91 Aligned_cols=57 Identities=14% Similarity=0.069 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHcCCCEEEeccccc-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWT-RILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~-ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
.-+|.++.|+++|++.+-++++-+ .+.+.- .+..+. +.+.+.++.++++||.+.+++
T Consensus 121 ~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i--~~~~s~---~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 121 LDPEQAKRLKDAGLDYYNHNLDTSQEFYSNI--ISTHTY---DDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CCHHHHHHHHHcCCCEEEEcccCCHHHHhhc--cCCCCH---HHHHHHHHHHHHcCCEEEEeE
Confidence 348999999999999999998821 123321 122333 667889999999999876554
No 91
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=75.27 E-value=11 Score=34.19 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
++|++.+.+.|++.+|++++-|.+.=.... +.--.+.++...+.++.+++.|+++.++.-
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 889999999999999999977665333211 333467788899999999999999998864
No 92
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=74.56 E-value=39 Score=31.06 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccc-----------ccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--------
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRI-----------LPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-------- 79 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri-----------~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-------- 79 (223)
.+-++.++++|++.|=+.=.|..- +|.+ .+| +.| ...+++.+++.||++-+=+-
T Consensus 61 ~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~---~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 61 LELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP---KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT---TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh---hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 344688899999999988899653 2322 222 234 58999999999999765220
Q ss_pred --CCCCchhhhhhhCC-------------CCChHhHHHHHHHHHHHHHHhC
Q 046612 80 --HFDPPQALEEEYGG-------------FLSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 80 --h~~~P~~l~~~~gg-------------~~~~~~~~~f~~y~~~~~~~~~ 115 (223)
--.+|.|+... ++ ..+|++.+...+-...+++.+|
T Consensus 134 ~l~~~hPdw~l~~-~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 134 DLYREHPDWVLRD-PGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp CHCCSSBGGBTCC-TTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccceeec-CCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 12458887432 11 3468888888888888888886
No 93
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=74.06 E-value=14 Score=34.63 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
++|++.+.+.|++.+|+.++-+.+ ......|+.+++.|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~---------------~n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDV---------------RNLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 455699999999999999865443 124668888999998887766554445
No 94
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=73.14 E-value=16 Score=31.56 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
.+|++...+.|++.+|+++..+ .++...++++.++++|+++.+.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 4788888899999999886332 3466789999999999999998764
No 95
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=72.33 E-value=27 Score=30.23 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
-++|++...+.|++.+|+++..+. ++...+.++.++++|+++.+.+
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHHHHHCCCeEEEEE
Confidence 578899999999999999875433 3556888889999999887765
No 96
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=72.21 E-value=18 Score=32.60 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=43.7
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
++.++++|.+++-+.+-|. |+. ...+|.+-++...++.++|.+.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~--~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDE--DDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCc--chHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5779999999999999987 542 134578888999999999999999988854
No 97
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=71.55 E-value=18 Score=31.36 Aligned_cols=66 Identities=11% Similarity=0.076 Sum_probs=49.4
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC-CCCCc
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL-HFDPP 84 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-h~~~P 84 (223)
-++|++...+.|++.+++.++=|...-.... +.--.+.++...+.++.++++|+++.+++. -|+.|
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~ 141 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNI-NCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP 141 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC
Confidence 4789999999999999999876654222111 333367788999999999999999988765 24444
No 98
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.46 E-value=47 Score=29.35 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCC--CEEEecccccccccCCCCCC--CCChhHHHHHHHHHHHHHhCCCeeEEecCCC---CCchhhh--h
Q 046612 19 KEDIKLMKKVGL--DSFRFSISWTRILPKGKISG--GVNPLGVKFYKDLINELLANDIKPFVTLLHF---DPPQALE--E 89 (223)
Q Consensus 19 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g--~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l~--~ 89 (223)
.+-++.+++.|+ +++=+++.|......+...| .+|.+..---+++|+.|+++|+++++.++-+ +.|..-+ +
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 344566666664 67777777854332110012 2333333334789999999999999987644 2233200 0
Q ss_pred h-h-------------------C---CCCChHhHHHHHHHHHHHHHHhCCCcc-cEEeecCCccc
Q 046612 90 E-Y-------------------G---GFLSPKIVKDFVDYGDFCFKTYGDRVK-LWASMNEPNGM 130 (223)
Q Consensus 90 ~-~-------------------g---g~~~~~~~~~f~~y~~~~~~~~~~~v~-~w~t~NEp~~~ 130 (223)
+ + + .++||+..+.|.+..+.+ +..-|+ +|.=+|||...
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 0 0 1 256888888888777665 222344 48889999654
No 99
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=71.40 E-value=9.6 Score=38.61 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHcCCCEEEeccccc---------------ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWT---------------RILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~---------------ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
...+-+..+++||++++=+|=-.. +|.|.- | +.+-+++++++++++||++|+++.
T Consensus 21 ~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 21 DAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 466778999999999997765332 333332 2 235579999999999999999864
No 100
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=70.57 E-value=43 Score=30.67 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
.|++||++++++|++.|=+.|- .. ..+.. +....+++.+.+.|.+.++.+-
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~~---d~~~~---~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------SS---DSWQP---DQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------cC---CcccH---HHHHHHHHHHHhcCCEEEEEec
Confidence 5899999999999999999986 11 34555 5568999999999999988764
No 101
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=70.50 E-value=22 Score=29.83 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=41.5
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe-cCCCCCc
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT-LLHFDPP 84 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt-L~h~~~P 84 (223)
..+++-+++++++|.+.+++..... |......+.....++..+++.+.+.+.||...+= +.+++.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 3456678899999999998754321 2110001122344567888888899999998874 3444444
No 102
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=70.30 E-value=20 Score=30.40 Aligned_cols=73 Identities=18% Similarity=0.425 Sum_probs=48.6
Q ss_pred cChHHHHHHHHHcCCCEEEe----------------------cccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe
Q 046612 16 HHYKEDIKLMKKVGLDSFRF----------------------SISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIK 73 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~----------------------si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~ 73 (223)
-.-+.-++++++||.+++.| ++ | +||++ -+|. +.+..+++.+++.|++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG----GIdl---~Nf~~I~~i~ldaGv~ 204 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG----GIDL---DNFEEIVQIALDAGVE 204 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC----CccH---HhHHHHHHHHHHcCCC
Confidence 35677799999999999985 23 3 57764 4665 7789999999999998
Q ss_pred eEEecCC-CCCchhhhhhhCCCCChHhHHHH
Q 046612 74 PFVTLLH-FDPPQALEEEYGGFLSPKIVKDF 103 (223)
Q Consensus 74 p~vtL~h-~~~P~~l~~~~gg~~~~~~~~~f 103 (223)
-++ .| |+ ..-++-.|-++++.+...
T Consensus 205 kvi--PHIYs---siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 205 KVI--PHVYS---SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred eec--cccce---eccccccCCCCHHHHHHH
Confidence 664 12 11 112232566676655433
No 103
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=69.91 E-value=33 Score=30.92 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe-eEEecCCCCCchhhhhhhCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYKDLINELLANDIK-PFVTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg 93 (223)
.-++.+++|+++|++.+-+++ +-+ ++.-.- ....+. +...+.++.+++.|+. +.++|. +++|.
T Consensus 106 i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~s~---~~~~~a~~~l~~~g~~~v~~dli-~GlPg-------- 171 (375)
T PRK05628 106 TSPEFFAALRAAGFTRVSLGMQSAAPHVLAVL--DRTHTP---GRAVAAAREARAAGFEHVNLDLI-YGTPG-------- 171 (375)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCCH---HHHHHHHHHHHHcCCCcEEEEEe-ccCCC--------
Confidence 457889999999999666666 222 222221 122333 4567889999999998 767764 55552
Q ss_pred CCChHhHHHHHHHHHHHHHHhC-CCcccEEeecCCcccccccccCC
Q 046612 94 FLSPKIVKDFVDYGDFCFKTYG-DRVKLWASMNEPNGMVMNGYNGG 138 (223)
Q Consensus 94 ~~~~~~~~~f~~y~~~~~~~~~-~~v~~w~t~NEp~~~~~~~y~~g 138 (223)
++.+.|.+=.+.+.+ ++ +.|..+...=+|+.....-+..|
T Consensus 172 ----qt~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g 212 (375)
T PRK05628 172 ----ESDDDWRASLDAALE-AGVDHVSAYALIVEDGTALARRVRRG 212 (375)
T ss_pred ----CCHHHHHHHHHHHHh-cCCCEEEeeeeecCCCChHHHHhhcC
Confidence 234445444444433 43 45655555556665433333333
No 104
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=69.78 E-value=20 Score=33.41 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=42.2
Q ss_pred hHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 18 YKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
-++.+++|+++|++.+-+++ |-+ ++.-.-. .| .+. +.+.+.++.++++||.+.+++. +++|
T Consensus 286 ~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~-K~-~~~---~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 286 DYETLKVMKENGLRLLLVGYESGDQQILKNIK-KG-LTV---EIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhc-CC-CCH---HHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 36789999999999888888 332 2222110 12 233 5678999999999999988775 4555
No 105
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=69.78 E-value=11 Score=37.98 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCC-C----CCCCC--hhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGK-I----SGGVN--PLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~----~g~~n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
...+-++.+++||++++=+|=-+.-.-.... . -..+| .-+.+-++++++++.++||.+|+++.
T Consensus 17 ~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 17 DAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4677889999999999987754432100000 0 00111 11345579999999999999999853
No 106
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=69.44 E-value=26 Score=30.84 Aligned_cols=67 Identities=10% Similarity=0.159 Sum_probs=47.3
Q ss_pred cccCCcccC---hHHHHHHHHHcCCCEEEecc----cccccccCCCC-CCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 9 DIASGFYHH---YKEDIKLMKKVGLDSFRFSI----SWTRILPKGKI-SGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 9 ~~a~d~y~~---~~eDi~l~~~lG~~~~R~si----~W~ri~P~~~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
|++.+++-. .++=|++|+.+|+|.+-+-+ .++. .|.-.. +|.+..+.+ +++++.++++||++|.-+-
T Consensus 7 D~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~ei---~ei~~yA~~~gI~vIPeid 81 (301)
T cd06565 7 DLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEEI---REIDDYAAELGIEVIPLIQ 81 (301)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHHH---HHHHHHHHHcCCEEEecCC
Confidence 455544443 67789999999999998754 2322 232111 377888554 9999999999999998653
No 107
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=69.26 E-value=11 Score=33.78 Aligned_cols=111 Identities=19% Similarity=0.375 Sum_probs=59.2
Q ss_pred ccChHHHHHHHHHcCCCEEEecc----cccccccCC--------------------------CCCCCCC----hhHHHHH
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSI----SWTRILPKG--------------------------KISGGVN----PLGVKFY 60 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si----~W~ri~P~~--------------------------~~~g~~n----~~~l~~y 60 (223)
|.+|++.||.|+--|+|..=--+ -|.|++-+- .-.|++. .+-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 45899999999999999764222 143433221 0013222 2334556
Q ss_pred HHHHHHHHhCCCeeEEecCCCCCchhhhhhh--------CCCC--------ChHhHHHHHHHHH----HHHHHhCCCccc
Q 046612 61 KDLINELLANDIKPFVTLLHFDPPQALEEEY--------GGFL--------SPKIVKDFVDYGD----FCFKTYGDRVKL 120 (223)
Q Consensus 61 ~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~--------gg~~--------~~~~~~~f~~y~~----~~~~~~~~~v~~ 120 (223)
+++++.+++.||+|++--+---.|..+.+++ +.|. .| .-+.|.+.++ ...+.|| .-++
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 8999999999999999877666788887765 2232 22 2356666555 4456788 4555
Q ss_pred EE--eecCC
Q 046612 121 WA--SMNEP 127 (223)
Q Consensus 121 w~--t~NEp 127 (223)
+. +|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 55 78883
No 108
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=68.84 E-value=9.1 Score=40.31 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCEEEecccccccc-c----CCC-----C--CC--CCCh--h--HHHHHHHHHHHHHhCCCeeEEecC
Q 046612 20 EDIKLMKKVGLDSFRFSISWTRIL-P----KGK-----I--SG--GVNP--L--GVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 20 eDi~l~~~lG~~~~R~si~W~ri~-P----~~~-----~--~g--~~n~--~--~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
+.|+.+|+||++++=+.=-..... . .+. + .+ .++. . .++=++++|++|.++||++|+++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 557899999999998763222110 0 000 0 00 0111 1 456689999999999999999853
No 109
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=68.84 E-value=23 Score=33.85 Aligned_cols=107 Identities=16% Similarity=0.262 Sum_probs=63.6
Q ss_pred hHHHHHHHHHcCCCEEEeccc--ccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCC
Q 046612 18 YKEDIKLMKKVGLDSFRFSIS--WTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~--W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 95 (223)
-++.+++|+++|++.+=+++. -.+++-.-. +| .+. +-..+.++.+++.|+++.++|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rg-ht~---~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTK-RG-HTV---RDVVEATRLLRDAGLKVVYHIM-PGLPG---------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CC-CCH---HHHHHHHHHHHHcCCeEEEEee-cCCCC----------
Confidence 578899999999997777762 333332210 12 222 4457788899999999888775 66662
Q ss_pred ChHhHHHHHHHHHHHHH--HhC-CCcccEEeecCCcccccccccCCCCCC
Q 046612 96 SPKIVKDFVDYGDFCFK--TYG-DRVKLWASMNEPNGMVMNGYNGGSFAP 142 (223)
Q Consensus 96 ~~~~~~~f~~y~~~~~~--~~~-~~v~~w~t~NEp~~~~~~~y~~g~~~p 142 (223)
++.+.+.+=++.+++ .++ |.|+.+-+.=.|+.....-|..|.|.|
T Consensus 269 --qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 --SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred --CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 123444555555554 343 456666655555544333344454433
No 110
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=68.74 E-value=18 Score=31.69 Aligned_cols=71 Identities=21% Similarity=0.396 Sum_probs=48.6
Q ss_pred cccCCccc--ChHHHHHHHHHcCCCEEEeccc----ccc---cccCCC----------CCCCCChhHHHHHHHHHHHHHh
Q 046612 9 DIASGFYH--HYKEDIKLMKKVGLDSFRFSIS----WTR---ILPKGK----------ISGGVNPLGVKFYKDLINELLA 69 (223)
Q Consensus 9 ~~a~d~y~--~~~eDi~l~~~lG~~~~R~si~----W~r---i~P~~~----------~~g~~n~~~l~~y~~~i~~l~~ 69 (223)
|+|-.++. ..++-|+.|+..++|.+.+-++ |+- ..|+-+ ..|.+..+. ++++++.+++
T Consensus 7 D~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~ 83 (303)
T cd02742 7 DVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAA 83 (303)
T ss_pred eccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHH
Confidence 45553333 2567799999999999998886 622 223210 025677755 5999999999
Q ss_pred CCCeeEEecCCCCCch
Q 046612 70 NDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 70 ~gi~p~vtL~h~~~P~ 85 (223)
+||++|.-+ |+|.
T Consensus 84 rgI~viPEi---D~PG 96 (303)
T cd02742 84 RGIEVIPEI---DMPG 96 (303)
T ss_pred cCCEEEEec---cchH
Confidence 999998865 4554
No 111
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=68.15 E-value=4.5 Score=27.24 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=32.5
Q ss_pred cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 40 TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 40 ~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
+++.|.. +.-..++++..-+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5778875 66667899999999999999999 888887643
No 112
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=67.91 E-value=19 Score=30.92 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCeeEEecCC--------------CCCchhh--h--------------hhhCC----CCChH-----
Q 046612 58 KFYKDLINELLANDIKPFVTLLH--------------FDPPQAL--E--------------EEYGG----FLSPK----- 98 (223)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~vtL~h--------------~~~P~~l--~--------------~~~gg----~~~~~----- 98 (223)
+.++.+|+.-++.|.++|+||-= ...|.|- . .+.+| -.+|+
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 67899999999999999999852 1122211 1 00011 11333
Q ss_pred -hHHHHHHHHHHHHHHhCCC-----cccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 046612 99 -IVKDFVDYGDFCFKTYGDR-----VKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAAHNMLLSH 172 (223)
Q Consensus 99 -~~~~f~~y~~~~~~~~~~~-----v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AH 172 (223)
.++.| +..+..+||.. |++|.+-|||.+... =-..++|-+ ..+.-+....++.
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~--TH~dVHP~~----------------~t~~El~~r~i~~ 162 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHS--THRDVHPEP----------------VTYDELRDRSIEY 162 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHH--HTTTT--S-------------------HHHHHHHHHHH
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcc--cccccCCCC----------------CCHHHHHHHHHHH
Confidence 34444 66667777664 999999999986532 111233432 2345566677777
Q ss_pred HHHHHHHHHhcCCCCCCeE-EEeecC
Q 046612 173 GALVNLYKHKYQPYQMGKI-GITILT 197 (223)
Q Consensus 173 a~a~~~~k~~~~~~~~~kv-Gi~~~~ 197 (223)
|+|+|.. .|.++| |.+.-.
T Consensus 163 AkaiK~~------DP~a~v~GP~~wg 182 (239)
T PF12891_consen 163 AKAIKAA------DPDAKVFGPVEWG 182 (239)
T ss_dssp HHHHHHH-------TTSEEEEEEE-S
T ss_pred HHHHHhh------CCCCeEeechhhc
Confidence 8776653 477764 777543
No 113
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=67.86 E-value=10 Score=33.08 Aligned_cols=68 Identities=18% Similarity=0.367 Sum_probs=47.6
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCCh
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSP 97 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~ 97 (223)
.++-+++++++|+..+.+..- +.-+++.+++|+++++.+.++.| ||.+|--..|.-++..|......
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~-----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~ 174 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM-----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTR 174 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE
T ss_pred HHHHHHHHHHcCCCEEeeCcC-----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHH
Confidence 367789999999999998762 33568899999999999999975 66776666787777655444333
Q ss_pred H
Q 046612 98 K 98 (223)
Q Consensus 98 ~ 98 (223)
|
T Consensus 175 E 175 (273)
T PF10566_consen 175 E 175 (273)
T ss_dssp -
T ss_pred H
Confidence 3
No 114
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=67.80 E-value=36 Score=30.50 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=41.9
Q ss_pred hHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCC-CChhHHHHHHHHHHHHHhCCCeeE-EecCCCCCc
Q 046612 18 YKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGG-VNPLGVKFYKDLINELLANDIKPF-VTLLHFDPP 84 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~-~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P 84 (223)
-++.++.|+++|+|.+-+++ +-+ .+...- |+ .+. +-..+.++.+++.|+..+ ++|. +++|
T Consensus 97 ~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~~---~~~~~ai~~lr~~g~~~v~iDli-~GlP 160 (350)
T PRK08446 97 TKAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHSQ---KQIIKAIENAKKAGFENISIDLI-YDTP 160 (350)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCEEEEEee-cCCC
Confidence 47899999999999777776 343 333222 33 333 456889999999999754 7775 6666
No 115
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=67.77 E-value=44 Score=29.17 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=64.6
Q ss_pred hHHHHHHHHHcC--CCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC---Cchhhhh--h
Q 046612 18 YKEDIKLMKKVG--LDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD---PPQALEE--E 90 (223)
Q Consensus 18 ~~eDi~l~~~lG--~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~---~P~~l~~--~ 90 (223)
..+-++.+++.| ++++=+.+.|.+-.-.+ +=.+|.+..--.+++|+.|+++|+++++.++-+- .|..-+. +
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~--~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~ 103 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWC--DFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEK 103 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcce--eeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHC
Confidence 456678889999 66677888887432211 0134443334458999999999999988765332 2221110 0
Q ss_pred -----------h--------C---CCCChHhHHHHHHHHHHHHHHhCCCccc-EEeecCC
Q 046612 91 -----------Y--------G---GFLSPKIVKDFVDYGDFCFKTYGDRVKL-WASMNEP 127 (223)
Q Consensus 91 -----------~--------g---g~~~~~~~~~f~~y~~~~~~~~~~~v~~-w~t~NEp 127 (223)
+ + .+.||+..+.|.+..+.+.+ .| |++ |.=+|||
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 104 GYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred CeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 0 1 15688888888777776554 33 444 5568886
No 116
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=67.76 E-value=16 Score=39.71 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=42.1
Q ss_pred hHHHHHHHHHcCCCEEEeccccc---------------ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--C
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWT---------------RILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL--H 80 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~---------------ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--h 80 (223)
..+-++.+++||++++=+|=-+. +|.|.- | +.+-++++++.|+++||.+|+++. |
T Consensus 760 ~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----~~edf~~Lv~~ah~~Gi~vilDiV~NH 831 (1693)
T PRK14507 760 AEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI---G-----GEEGFERFCAALKAHGLGQLLDIVPNH 831 (1693)
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 56678899999999998775554 222221 1 345579999999999999999864 5
Q ss_pred CC
Q 046612 81 FD 82 (223)
Q Consensus 81 ~~ 82 (223)
..
T Consensus 832 ~~ 833 (1693)
T PRK14507 832 MG 833 (1693)
T ss_pred cC
Confidence 43
No 117
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=67.39 E-value=51 Score=31.01 Aligned_cols=95 Identities=19% Similarity=0.419 Sum_probs=59.4
Q ss_pred hHHH-HHHHHHcCCCEEEec-------ccccc-cccCCCCC---------CCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKED-IKLMKKVGLDSFRFS-------ISWTR-ILPKGKIS---------GGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eD-i~l~~~lG~~~~R~s-------i~W~r-i~P~~~~~---------g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
++.| +.++|+|.+..+|+. ..|.. |=|..... -+-|.=| ..++++.|+..|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 4556 688999999999953 23543 22221000 0112223 38899999999999999985
Q ss_pred CCCCchhhhhhhCCCCChHhHHHHHHHHH--------HHHHHhCC----CcccEEeecCC
Q 046612 80 HFDPPQALEEEYGGFLSPKIVKDFVDYGD--------FCFKTYGD----RVKLWASMNEP 127 (223)
Q Consensus 80 h~~~P~~l~~~~gg~~~~~~~~~f~~y~~--------~~~~~~~~----~v~~w~t~NEp 127 (223)
= |- ...+....|.+||. .+-...|. .|++|.+=||-
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 1 11 22345667777763 23334444 49999999997
No 118
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=67.25 E-value=12 Score=37.04 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHHHcCCCEEEeccccccc----------------ccCCC--CCCCCCh-hHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRI----------------LPKGK--ISGGVNP-LGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri----------------~P~~~--~~g~~n~-~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
|+.+|+||++++=+.---.-. -|... .++.+.. ..++=++++|++|.++||++|+++.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 789999999999876321111 01000 0011100 1245689999999999999999854
No 119
>PRK12568 glycogen branching enzyme; Provisional
Probab=67.14 E-value=14 Score=36.85 Aligned_cols=93 Identities=12% Similarity=0.197 Sum_probs=53.7
Q ss_pred HHHHHHcCCCEEEecc--------cccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--CCCCc-------
Q 046612 22 IKLMKKVGLDSFRFSI--------SWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL--HFDPP------- 84 (223)
Q Consensus 22 i~l~~~lG~~~~R~si--------~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~~P------- 84 (223)
++.+++||++++=+.- +|- -.|.+...-....-..+-++.+|++|.++||++|+++. |+.--
T Consensus 276 l~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~f 354 (730)
T PRK12568 276 IPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGLAQF 354 (730)
T ss_pred HHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccccccC
Confidence 6889999999997652 231 11111000000111235579999999999999999864 43211
Q ss_pred ----hhhh-h-h---hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 046612 85 ----QALE-E-E---YGGF-------LSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 85 ----~~l~-~-~---~gg~-------~~~~~~~~f~~y~~~~~~~~~ 115 (223)
.+-. + . +..| .++++.+.+.+-++.-+++|+
T Consensus 355 dg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 355 DGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred CCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 0100 0 0 0123 356777777777777777764
No 120
>PRK09936 hypothetical protein; Provisional
Probab=66.88 E-value=59 Score=28.74 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=60.4
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCCh
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSP 97 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~ 97 (223)
|++=+..++.+|++++ =+.|++.=-+.. |.- + .+..+.++.+.+.||+++|.|+ +| |.|++..- .++
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~f--g~~--~--g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~~~---~d~ 106 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADF--GGQ--R--GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMHQK---QDG 106 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCc--ccc--h--HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHHHh---cCc
Confidence 4445788999999985 457988811111 111 2 4689999999999999999996 67 77665431 122
Q ss_pred HhHH-HHH-------HHHHHHHHHhCCCcccEEeecCCc
Q 046612 98 KIVK-DFV-------DYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 98 ~~~~-~f~-------~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
...+ .+. ..++...++.+-.|+.|-+==|+.
T Consensus 107 ~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElD 145 (296)
T PRK09936 107 AALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELD 145 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccc
Confidence 2212 222 234455556666677776444443
No 121
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=66.47 E-value=20 Score=35.93 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=62.3
Q ss_pred HcCCCEEEeccc-ccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC---CCchhh--hhh----------
Q 046612 27 KVGLDSFRFSIS-WTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHF---DPPQAL--EEE---------- 90 (223)
Q Consensus 27 ~lG~~~~R~si~-W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l--~~~---------- 90 (223)
++=++++++++. |.+ .-+ .=.+|..-.-.-+.+|+.|.+.||+.++.+... |.|..- .++
T Consensus 293 ~IP~d~~~lD~~~~~~--~~~--~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~ 368 (772)
T COG1501 293 DIPLDVFVLDIDFWMD--NWG--DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGE 368 (772)
T ss_pred cCcceEEEEeehhhhc--ccc--ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCC
Confidence 356789999995 876 111 012333222223699999999999999987632 333211 110
Q ss_pred ------------hCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccc
Q 046612 91 ------------YGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMN 133 (223)
Q Consensus 91 ------------~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~ 133 (223)
+-.++||+..+.|.+....-...+| -.-+|.=+|||.+....
T Consensus 369 ~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 369 IYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred EeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 0126789999998873333233332 25679999999987554
No 122
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=66.37 E-value=37 Score=30.58 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHcCCCEEEeccc--ccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCee-EEecCCCCCchhhhhhhCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSIS--WTRILPKGKISGGVNPLGVKFYKDLINELLANDIKP-FVTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~--W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p-~vtL~h~~~P~~l~~~~gg 93 (223)
.-++.+++|+++|++.+-+++. =+++...- ....+. +-..+.++.+++.|+.. .+++. +++|.
T Consensus 98 l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l--~r~~~~---~~~~~~i~~l~~~g~~~v~~dli-~GlPg-------- 163 (377)
T PRK08599 98 LTKEKLQVLKDSGVNRISLGVQTFNDELLKKI--GRTHNE---EDVYEAIANAKKAGFDNISIDLI-YALPG-------- 163 (377)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCCH---HHHHHHHHHHHHcCCCcEEEeee-cCCCC--------
Confidence 3578899999999997777762 22343332 123344 55688999999999974 45553 56662
Q ss_pred CCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccc
Q 046612 94 FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMV 131 (223)
Q Consensus 94 ~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~ 131 (223)
+ +.+.|.+-.+.+.+.=-+.|..+...-+|....
T Consensus 164 -q---t~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 164 -Q---TIEDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred -C---CHHHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 1 234444444444332223455555555666443
No 123
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=66.17 E-value=29 Score=30.95 Aligned_cols=72 Identities=22% Similarity=0.390 Sum_probs=47.8
Q ss_pred CcccCCccc--ChHHHHHHHHHcCCCEEEeccc----c-------cccccCCC-------CCCCCChhHHHHHHHHHHHH
Q 046612 8 GDIASGFYH--HYKEDIKLMKKVGLDSFRFSIS----W-------TRILPKGK-------ISGGVNPLGVKFYKDLINEL 67 (223)
Q Consensus 8 ~~~a~d~y~--~~~eDi~l~~~lG~~~~R~si~----W-------~ri~P~~~-------~~g~~n~~~l~~y~~~i~~l 67 (223)
-|+|-.++. ..++-|+.|+..++|.+.+-++ | +.+-..+. ..|.+..+. ++++++.+
T Consensus 8 lD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~d---i~elv~yA 84 (329)
T cd06568 8 LDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQED---YKDIVAYA 84 (329)
T ss_pred eeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHH---HHHHHHHH
Confidence 355555554 3667799999999999988773 4 22211110 014566644 59999999
Q ss_pred HhCCCeeEEecCCCCCch
Q 046612 68 LANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 68 ~~~gi~p~vtL~h~~~P~ 85 (223)
+++||++|.-+ |+|.
T Consensus 85 ~~rgI~vIPEi---D~PG 99 (329)
T cd06568 85 AERHITVVPEI---DMPG 99 (329)
T ss_pred HHcCCEEEEec---CCcH
Confidence 99999988755 4554
No 124
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=65.39 E-value=26 Score=30.11 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=43.9
Q ss_pred hHHHHHHHHHcC----CCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKEDIKLMKKVG----LDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eDi~l~~~lG----~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-.+|++...+.| ++.+|+.++.+.+.=.... +.--.+.++...+.++.+++.|+++.+++.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 135 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKL-KKTREEVLERAVEAVEYAKSHGLDVEFSAE 135 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEeee
Confidence 378999999999 9999998766544322100 222235678888999999999999876553
No 125
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=65.10 E-value=24 Score=27.31 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCC
Q 046612 57 VKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDR 117 (223)
Q Consensus 57 l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~ 117 (223)
.+=+.-+++.|++.|++|++.+.= -.+.|.. |-|. +.+..+.|.+=.+..++++|=.
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCE
Confidence 345688999999999999998830 0123543 4664 5677778888788888888754
No 126
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=64.94 E-value=28 Score=33.74 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc----hhhhhh----
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP----QALEEE---- 90 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P----~~l~~~---- 90 (223)
++|++.+.+.|++.+|+..+.+.+ +.....++.++++|+.+.+++..-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~ 158 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEEL 158 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 445799999999999998766443 234777788888888888776544455 211100
Q ss_pred ------------hCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcc
Q 046612 91 ------------YGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (223)
Q Consensus 91 ------------~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~ 129 (223)
-.|...|. ...+.++.+.++++-.+ ...+-|-..+
T Consensus 159 ~~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~~pi-~~H~Hnt~Gl 205 (582)
T TIGR01108 159 LEMGVDSICIKDMAGILTPK---AAYELVSALKKRFGLPV-HLHSHATTGM 205 (582)
T ss_pred HHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCCCce-EEEecCCCCc
Confidence 03444544 44555566666665222 2556666554
No 127
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=64.81 E-value=42 Score=30.67 Aligned_cols=106 Identities=11% Similarity=0.163 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe-eEEecCCCCCchhhhhhhCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SW-TRILPKGKISGGVNPLGVKFYKDLINELLANDIK-PFVTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg 93 (223)
.-++.++.|+++|+|.+-+++ |- .++.-.- .-..+. +-..+.++.+++.|+. +-++|. +++|.
T Consensus 113 lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l--~R~~~~---~~~~~ai~~l~~~G~~~v~~dlI-~GlPg-------- 178 (400)
T PRK07379 113 FDLEQLQGYRSLGVNRVSLGVQAFQDELLALC--GRSHRV---KDIFAAVDLIHQAGIENFSLDLI-SGLPH-------- 178 (400)
T ss_pred CCHHHHHHHHHCCCCEEEEEcccCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC--------
Confidence 357889999999999666665 22 1222221 012333 3457888999999998 667776 67772
Q ss_pred CCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCC
Q 046612 94 FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSF 140 (223)
Q Consensus 94 ~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~ 140 (223)
++.+.+.+=.+.+.+-=-+.|..+...-||+......+..|.+
T Consensus 179 ----qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 ----QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred ----CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 1233444444443332235677777777887654444544543
No 128
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=64.58 E-value=28 Score=32.20 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeE-EecCCCCCc
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SW-TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPF-VTLLHFDPP 84 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P 84 (223)
.-++.+++|+++|++.+-+++ +- .++.-.-. ++ .+. +-..+.|+.+++.|+..+ ++|. +++|
T Consensus 139 lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~-R~-~~~---~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 139 TTAEKLALLAARGVNRLSIGVQSFHDSELHALH-RP-QKR---ADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHhC-CC-CCH---HHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 357889999999999776666 33 22322210 12 233 556889999999999864 6664 6666
No 129
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=64.10 E-value=9.8 Score=35.04 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCC----CCCC--ChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 20 EDIKLMKKVGLDSFRFSISWTRILPKGKI----SGGV--NPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 20 eDi~l~~~lG~~~~R~si~W~ri~P~~~~----~g~~--n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
+-++.+++||++++=++=--.-+...... --.+ ..-.++-.+++++++.++||++|+++
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 67899999999999665211111111000 0111 23345778999999999999999997
No 130
>PLN02960 alpha-amylase
Probab=64.06 E-value=17 Score=36.94 Aligned_cols=99 Identities=9% Similarity=0.113 Sum_probs=56.7
Q ss_pred ccChHHH-HHHHHHcCCCEEEecccccccccCCCCCC--CC-------ChhHHHHHHHHHHHHHhCCCeeEEecC--CCC
Q 046612 15 YHHYKED-IKLMKKVGLDSFRFSISWTRILPKGKISG--GV-------NPLGVKFYKDLINELLANDIKPFVTLL--HFD 82 (223)
Q Consensus 15 y~~~~eD-i~l~~~lG~~~~R~si~W~ri~P~~~~~g--~~-------n~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~ 82 (223)
|.-..+. ++.+++||++++=+.--=. .|....-| .. ..-..+=++.+|++|.++||.+|+++. |+.
T Consensus 415 f~~~~e~~LdYLk~LGvt~IeLmPv~e--~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~ 492 (897)
T PLN02960 415 FKEFTQKVLPHVKKAGYNAIQLIGVQE--HKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAA 492 (897)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccc--CCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 3334333 8999999999998762110 01100000 00 001124479999999999999999974 432
Q ss_pred C--ch-----------hhhh--h--hCCC-------CChHhHHHHHHHHHHHHHHhC
Q 046612 83 P--PQ-----------ALEE--E--YGGF-------LSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 83 ~--P~-----------~l~~--~--~gg~-------~~~~~~~~f~~y~~~~~~~~~ 115 (223)
. +. ++.. + ...| .++++.+.+.+-++.-+++|+
T Consensus 493 ~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 493 ADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred CccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 1 10 1110 0 0112 246777888888888888874
No 131
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=63.94 E-value=24 Score=32.23 Aligned_cols=94 Identities=20% Similarity=0.377 Sum_probs=56.4
Q ss_pred HcCCCEEEecccccccccCCCCCCCCChhHHHHHHHH--HHHHHhCCCeeEEecCCCCCchhhhhhh---CC---CCChH
Q 046612 27 KVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDL--INELLANDIKPFVTLLHFDPPQALEEEY---GG---FLSPK 98 (223)
Q Consensus 27 ~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~--i~~l~~~gi~p~vtL~h~~~P~~l~~~~---gg---~~~~~ 98 (223)
++|++..|+.|.=.+.-- +|..|. +|+++ -+..+..|+.++.+- |..|.|+.... || -+.++
T Consensus 77 ~lg~si~Rv~I~~ndfsl----~g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e 146 (433)
T COG5520 77 QLGFSILRVPIDSNDFSL----GGSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYE 146 (433)
T ss_pred ccCceEEEEEeccccccc----CCCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchh
Confidence 589999999886544322 244443 23332 233678899888877 88999986432 33 34444
Q ss_pred hHHHHHHHHHHHHHHhCC---CcccEEeecCCccc
Q 046612 99 IVKDFVDYGDFCFKTYGD---RVKLWASMNEPNGM 130 (223)
Q Consensus 99 ~~~~f~~y~~~~~~~~~~---~v~~w~t~NEp~~~ 130 (223)
.-.+|++|-...+..+++ .+.+-.+=|||.-.
T Consensus 147 ~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 147 KYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred HhHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 344444444333444433 46666789999854
No 132
>PRK07094 biotin synthase; Provisional
Probab=63.76 E-value=13 Score=32.63 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHcCCCEEEeccc-c-cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 17 HYKEDIKLMKKVGLDSFRFSIS-W-TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
.-+|+++.|+++|++.+-++++ - +++...- ....+. +.+.+.++.+++.||.+..++. +++|
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i--~~~~s~---~~~~~~i~~l~~~Gi~v~~~~i-iGlp 190 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKL--HPGMSF---ENRIACLKDLKELGYEVGSGFM-VGLP 190 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCeecceEE-EECC
Confidence 4589999999999999998884 3 2444432 122233 5678899999999998665553 3444
No 133
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=63.44 E-value=36 Score=30.48 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=59.9
Q ss_pred HHHHHHcC--CCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC-chhhhh--hhCCCCC
Q 046612 22 IKLMKKVG--LDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP-PQALEE--EYGGFLS 96 (223)
Q Consensus 22 i~l~~~lG--~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~-P~~l~~--~~gg~~~ 96 (223)
++.+++.+ ++++=++|.|..-. + .-.+|.+..---+++++.|.+.|++.++.++-+-. -..... .+..|.|
T Consensus 30 ~~~~r~~~IP~D~i~lDidy~~~~--~--~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftn 105 (332)
T cd06601 30 VEGYRDNNIPLDGLHVDVDFQDNY--R--TFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGR 105 (332)
T ss_pred HHHHHHcCCCCceEEEcCchhcCC--C--ceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCC
Confidence 34444444 56777777775321 1 12333333222378999999999998876641100 000000 0124678
Q ss_pred hHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccc
Q 046612 97 PKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMN 133 (223)
Q Consensus 97 ~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~ 133 (223)
|+..+.|.+..+.+.+ .| -.-+|+=+|||.++...
T Consensus 106 p~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 106 PDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccCC
Confidence 8888877666554433 23 23369999999977543
No 134
>PRK05660 HemN family oxidoreductase; Provisional
Probab=62.67 E-value=50 Score=29.95 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeE-EecCCCCCchhhhhhhCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYKDLINELLANDIKPF-VTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg 93 (223)
.-++.++.|+++|++.+-+++ +-+ ++.-.- ...-+. +-..+.++.+++.|+.++ ++|. +++|.
T Consensus 105 l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l--~r~~~~---~~~~~ai~~~~~~G~~~v~~dli-~Glpg-------- 170 (378)
T PRK05660 105 VEADRFVGYQRAGVNRISIGVQSFSEEKLKRL--GRIHGP---DEAKRAAKLAQGLGLRSFNLDLM-HGLPD-------- 170 (378)
T ss_pred CCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC--------
Confidence 456899999999999766666 232 222221 122333 445778999999999864 6664 66662
Q ss_pred CCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCc
Q 046612 94 FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 94 ~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
++.+.|.+-.+.+.+-=-+.+..+...=||+
T Consensus 171 ----qt~~~~~~~l~~~~~l~p~~is~y~l~~~~g 201 (378)
T PRK05660 171 ----QSLEEALDDLRQAIALNPPHLSWYQLTIEPN 201 (378)
T ss_pred ----CCHHHHHHHHHHHHhcCCCeEEeeccEeccC
Confidence 2344555555554443335576666666665
No 135
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=62.63 E-value=49 Score=29.65 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=49.2
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
.+.+|++|.+++.|=+-|. |++ +..+|..-.++.+++.++|++.+|--++=+.-++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~--~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDE--PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6889999999999999886 554 256888889999999999999999988877666644
No 136
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=62.61 E-value=13 Score=35.19 Aligned_cols=103 Identities=23% Similarity=0.440 Sum_probs=49.0
Q ss_pred HHcCCCEEEecccccccccCC-CC---CC-----CCChh--HHHHHHHHHHHHHh--CCCeeEEecCCCCCchhhhhh--
Q 046612 26 KKVGLDSFRFSISWTRILPKG-KI---SG-----GVNPL--GVKFYKDLINELLA--NDIKPFVTLLHFDPPQALEEE-- 90 (223)
Q Consensus 26 ~~lG~~~~R~si~W~ri~P~~-~~---~g-----~~n~~--~l~~y~~~i~~l~~--~gi~p~vtL~h~~~P~~l~~~-- 90 (223)
..+|++..|..|.=+..-... +. .+ .++.+ ..++--.+|+++++ .+|+.+.+- |+.|.|+...
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCc
Confidence 458999999888433221111 00 01 12221 11122245665544 347777776 8999998543
Q ss_pred h--CCCCC----hHhHHHHHHHHHHHHHHhCCC-cccE--EeecCCccc
Q 046612 91 Y--GGFLS----PKIVKDFVDYGDFCFKTYGDR-VKLW--ASMNEPNGM 130 (223)
Q Consensus 91 ~--gg~~~----~~~~~~f~~y~~~~~~~~~~~-v~~w--~t~NEp~~~ 130 (223)
+ +|... ++..+.|++|--+.++.|... |..| .+-|||...
T Consensus 188 ~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~ 236 (496)
T PF02055_consen 188 MNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNG 236 (496)
T ss_dssp SCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGG
T ss_pred CcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCC
Confidence 1 24443 345567777777777777654 5555 488999864
No 137
>PRK12677 xylose isomerase; Provisional
Probab=62.43 E-value=1.3e+02 Score=27.59 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeE-EecCCCCCchhhhhhhCCCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPF-VTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~ 95 (223)
..+|-++.++++|++.+=+.. ..+.|-. ....+.-...+++-+.+.+.||++. +|...|..|.+ +.|++.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~----~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lt 102 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFG----ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFT 102 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCC----CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCC
Confidence 478899999999999986532 3344442 1111111346788888999999966 56555555643 236777
Q ss_pred Ch
Q 046612 96 SP 97 (223)
Q Consensus 96 ~~ 97 (223)
++
T Consensus 103 s~ 104 (384)
T PRK12677 103 SN 104 (384)
T ss_pred CC
Confidence 64
No 138
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=62.42 E-value=30 Score=29.35 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=47.5
Q ss_pred ecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhh-------------------hhhh--CC
Q 046612 35 FSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQAL-------------------EEEY--GG 93 (223)
Q Consensus 35 ~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l-------------------~~~~--gg 93 (223)
+.+.|..+.++|. -.... ....+..+++.++++|+++++.+..++..... ..+| .|
T Consensus 26 v~~~f~~i~~~G~--l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DG 102 (253)
T cd06545 26 INLAFANPDANGT--LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSYNLDG 102 (253)
T ss_pred EEEEEEEECCCCe--EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 3445777766542 12211 12356788999999999999998766543211 0112 24
Q ss_pred ----CCChHh-HHHHHHHHHHHHHHhCC
Q 046612 94 ----FLSPKI-VKDFVDYGDFCFKTYGD 116 (223)
Q Consensus 94 ----~~~~~~-~~~f~~y~~~~~~~~~~ 116 (223)
|+.+.. .+.|..+.+.+-+.+..
T Consensus 103 IdiDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 103 IDVDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred eeEEeeccCccHhHHHHHHHHHHHHHhh
Confidence 554432 46788888888887753
No 139
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=62.12 E-value=76 Score=28.43 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=61.2
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec--CCCCCchhhhhh-----
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL--LHFDPPQALEEE----- 90 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL--~h~~~P~~l~~~----- 90 (223)
..+|++.+.+.|++.+|+....+.. +-..+.|+.+++.|+++.+.+ .|...|..+.+.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~---------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~ 153 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA---------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLME 153 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH---------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHH
Confidence 4689999999999999988754322 234788999999999988776 344445543211
Q ss_pred -h----------CCCCChHhHHHHHHHHHHHHHHhCCCccc-EEeecCCcc
Q 046612 91 -Y----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKL-WASMNEPNG 129 (223)
Q Consensus 91 -~----------gg~~~~~~~~~f~~y~~~~~~~~~~~v~~-w~t~NEp~~ 129 (223)
+ .|-.. ++...++++.+-+.+++.+.. ...-|-..+
T Consensus 154 ~~Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 201 (333)
T TIGR03217 154 SYGADCVYIVDSAGAML---PDDVRDRVRALKAVLKPETQVGFHAHHNLSL 201 (333)
T ss_pred hcCCCEEEEccCCCCCC---HHHHHHHHHHHHHhCCCCceEEEEeCCCCch
Confidence 1 23333 456677777777777744433 334555443
No 140
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=61.95 E-value=25 Score=30.93 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccC
Q 046612 58 KFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNG 137 (223)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~ 137 (223)
+-+.+.++.++++||++.+++. +++|. ++.+.+.+-++.+.+-=-+.|+.....-+|+.....-|..
T Consensus 163 ~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~ 229 (302)
T TIGR01212 163 ACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEK 229 (302)
T ss_pred HHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHc
Confidence 5568899999999999888765 55552 2345666666665543345688888888888766666666
Q ss_pred CCCCC
Q 046612 138 GSFAP 142 (223)
Q Consensus 138 g~~~p 142 (223)
|.+.|
T Consensus 230 g~~~~ 234 (302)
T TIGR01212 230 GELKT 234 (302)
T ss_pred CCCCC
Confidence 66654
No 141
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=61.76 E-value=22 Score=34.47 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCeeEEecC
Q 046612 57 VKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 57 l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
++=++++|++|.++||++|+++.
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 35689999999999999999854
No 142
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=61.30 E-value=36 Score=28.68 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 57 VKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 57 l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
++...+.|..|+++|+++++++.-+.
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~ 75 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNH 75 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCC
Confidence 35678899999999999999986544
No 143
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.85 E-value=1e+02 Score=27.89 Aligned_cols=83 Identities=17% Similarity=0.275 Sum_probs=57.2
Q ss_pred cCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhh
Q 046612 11 ASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEE 90 (223)
Q Consensus 11 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 90 (223)
|-=||+ |+- .....+.|+..+|+. | |.+-.+ +....+++.++++||-.=+..+|-.+..-+.++
T Consensus 79 aDiHf~-~rl-a~~~~~~g~~k~RIN-------P-----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~k 142 (361)
T COG0821 79 ADIHFD-YRL-ALEAAECGVDKVRIN-------P-----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEK 142 (361)
T ss_pred EEeecc-HHH-HHHhhhcCcceEEEC-------C-----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHH
Confidence 333555 432 333457788888864 3 555443 378999999999999999999999999999999
Q ss_pred hCCCCChHhHHHHHHHHHH
Q 046612 91 YGGFLSPKIVKDFVDYGDF 109 (223)
Q Consensus 91 ~gg~~~~~~~~~f~~y~~~ 109 (223)
|++-+.+..++--..+++.
T Consensus 143 y~~pt~ealveSAl~~a~~ 161 (361)
T COG0821 143 YGGPTPEALVESALEHAEL 161 (361)
T ss_pred hcCCCHHHHHHHHHHHHHH
Confidence 8765444344443444443
No 144
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=60.47 E-value=16 Score=31.60 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHF 81 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 81 (223)
+.+++.+.+.|++.+|+.++=|...-... -|.-.++.++...+.++.+++.|+++.++.-+|
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~-~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEA-LGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 35789999999999999876554432211 033335678899999999999999998865554
No 145
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=59.05 E-value=28 Score=36.34 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCeeEEecC
Q 046612 57 VKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 57 l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
++=+++||++|.++||++|+++.
T Consensus 554 i~EfK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecc
Confidence 45689999999999999999854
No 146
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=59.02 E-value=93 Score=26.45 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=37.3
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhC-CCeeEE
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLAN-DIKPFV 76 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~-gi~p~v 76 (223)
..+++.+++++++|++.+=+.+......+.+ ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 6789999999999999998888665443332 2244 3456666677777 666554
No 147
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=58.99 E-value=25 Score=31.68 Aligned_cols=62 Identities=24% Similarity=0.243 Sum_probs=40.9
Q ss_pred hHHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe-eEEecCCCCCch
Q 046612 18 YKEDIKLMKKVGLDSFRFSI-SW-TRILPKGKISGGVNPLGVKFYKDLINELLANDIK-PFVTLLHFDPPQ 85 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~ 85 (223)
-+|.+++|+++|++.+-+++ += .++...- ....+. +-+.+.++.+++.|+. +-++|. +++|.
T Consensus 102 t~e~l~~lk~~G~nrisiGvQS~~d~vL~~l--~R~~~~---~~~~~ai~~lr~~G~~~v~~dlI-~GlPg 166 (353)
T PRK05904 102 TQSQINLLKKNKVNRISLGVQSMNNNILKQL--NRTHTI---QDSKEAINLLHKNGIYNISCDFL-YCLPI 166 (353)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCCH---HHHHHHHHHHHHcCCCcEEEEEe-ecCCC
Confidence 47889999999999666655 23 2233222 122344 4568899999999997 556664 66663
No 148
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=58.97 E-value=28 Score=29.02 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=53.2
Q ss_pred HHHHHH----HHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCC
Q 046612 19 KEDIKL----MKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGF 94 (223)
Q Consensus 19 ~eDi~l----~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~ 94 (223)
++|++. +++.|++.+|+.++=+....... -+.--.+.++...++++.+++.|+++.+++-+.+ .
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-----------~ 133 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKN-LNKSREEALERIEEAVKYAKELGYEVAFGCEDAS-----------R 133 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHH-TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------G
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHh-hcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------c
Confidence 455555 45699999999987665444321 1333456788899999999999999977774421 1
Q ss_pred CChHhHHHHHHHHHHHHHH
Q 046612 95 LSPKIVKDFVDYGDFCFKT 113 (223)
Q Consensus 95 ~~~~~~~~f~~y~~~~~~~ 113 (223)
. ..+.+.++++.+.+.
T Consensus 134 ~---~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 134 T---DPEELLELAEALAEA 149 (237)
T ss_dssp S---SHHHHHHHHHHHHHH
T ss_pred c---cHHHHHHHHHHHHHc
Confidence 1 245666666666544
No 149
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=58.87 E-value=45 Score=29.56 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=48.6
Q ss_pred cccCCccc--ChHHHHHHHHHcCCCEEEecc----cccc---cccCCCC----CCCCChhHHHHHHHHHHHHHhCCCeeE
Q 046612 9 DIASGFYH--HYKEDIKLMKKVGLDSFRFSI----SWTR---ILPKGKI----SGGVNPLGVKFYKDLINELLANDIKPF 75 (223)
Q Consensus 9 ~~a~d~y~--~~~eDi~l~~~lG~~~~R~si----~W~r---i~P~~~~----~g~~n~~~l~~y~~~i~~l~~~gi~p~ 75 (223)
|+|-.++. ..++=|+.|+..++|.+.+-+ +|.- -.|+-++ .|.+..+. ++++++.++++||++|
T Consensus 9 D~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~d---i~elv~yA~~rgI~vI 85 (311)
T cd06570 9 DVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQ---IREVVAYARDRGIRVV 85 (311)
T ss_pred ecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHH---HHHHHHHHHHcCCEEE
Confidence 44444443 245668999999999988876 5642 3344211 14677744 5999999999999999
Q ss_pred EecCCCCCch
Q 046612 76 VTLLHFDPPQ 85 (223)
Q Consensus 76 vtL~h~~~P~ 85 (223)
.-+ |+|.
T Consensus 86 PEI---d~PG 92 (311)
T cd06570 86 PEI---DVPG 92 (311)
T ss_pred Eee---cCcc
Confidence 866 4554
No 150
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=58.77 E-value=46 Score=30.97 Aligned_cols=62 Identities=10% Similarity=0.181 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCC-eeEEecCCCCCc
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYKDLINELLANDI-KPFVTLLHFDPP 84 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi-~p~vtL~h~~~P 84 (223)
.-++.+++|+++|++.+.+++ +=+ .+.-.- ....+. +-..+.++.+++.|| .+.++|. +++|
T Consensus 149 lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l--~r~~~~---~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 149 LDLEMLDALRELGFNRLSLGVQDFDPEVQKAV--NRIQPF---EFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 457899999999999777776 222 121111 122333 456788999999999 5666664 5666
No 151
>PLN02389 biotin synthase
Probab=58.27 E-value=37 Score=31.04 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHcCCCEEEecccccc-cccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTR-ILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~r-i~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
.-+|.++.|+++|++.|-.+++=++ ++|.-. ..-++ +..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~--~~~s~---e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI--TTRSY---DDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC--CCCCH---HHHHHHHHHHHHcCCeEeEEEE
Confidence 6789999999999999998885222 445421 22234 6678999999999999877653
No 152
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=57.96 E-value=40 Score=30.02 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=65.4
Q ss_pred hHHHHHHHHHcCC--CEEEecccccccccCCCCCCC--CChhHHHHHHHHHHHHHhCCCeeEEecCCCCC-----chhhh
Q 046612 18 YKEDIKLMKKVGL--DSFRFSISWTRILPKGKISGG--VNPLGVKFYKDLINELLANDIKPFVTLLHFDP-----PQALE 88 (223)
Q Consensus 18 ~~eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g~--~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~-----P~~l~ 88 (223)
..+-++.+++.|+ +++=+.+.|.. .. +. +|.+..---+++|+.|++.|+++++.++-+-. |..-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~---~~---~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e 99 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTD---GK---RYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKE 99 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhC---CC---CceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHH
Confidence 3444566666665 45555555532 11 22 33322222378999999999999988764422 22111
Q ss_pred hh------------------------hCCCCChHhHHHHHHHHHHHHHHhCC-CcccEEeecCCcccc
Q 046612 89 EE------------------------YGGFLSPKIVKDFVDYGDFCFKTYGD-RVKLWASMNEPNGMV 131 (223)
Q Consensus 89 ~~------------------------~gg~~~~~~~~~f~~y~~~~~~~~~~-~v~~w~t~NEp~~~~ 131 (223)
.. +-.+.||+..+.|.+..+.+....+. -+-.|.=+|||.++.
T Consensus 100 ~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 100 AKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 00 01267899999999888877654332 356789999998653
No 153
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.78 E-value=1.3e+02 Score=26.28 Aligned_cols=135 Identities=20% Similarity=0.147 Sum_probs=75.0
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC---chhh----------hhhhCCCC---------ChHhHHHHHHHH
Q 046612 50 GGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP---PQAL----------EEEYGGFL---------SPKIVKDFVDYG 107 (223)
Q Consensus 50 g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~l----------~~~~gg~~---------~~~~~~~f~~y~ 107 (223)
|-++.+-++.++++++.+.++|-+.++=|.|-+. |... ... .... -.++++.|++-|
T Consensus 69 ~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~mt~~ei~~~i~~~~~aA 147 (327)
T cd02803 69 GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSP-GGGEPPREMTKEEIEQIIEDFAAAA 147 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCC-CCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999998432 1100 000 0001 124778888888
Q ss_pred HHHHHHhCCCcccEEeecCCcccccccccCCCC-CCC---CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 046612 108 DFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSF-APG---RCSNYVGNCTAGDSATEPYIAAHNMLLSHGALVNLYKHKY 183 (223)
Q Consensus 108 ~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~-~pg---~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~a~~~~k~~~ 183 (223)
+.+.+.=-|-|. +.+-.||+...| .|. +.+. + + .. +-|-..--...++.+|+..
T Consensus 148 ~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d~-y-----G---gs----~enr~r~~~eii~avr~~~ 205 (327)
T cd02803 148 RRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTDE-Y-----G---GS----LENRARFLLEIVAAVREAV 205 (327)
T ss_pred HHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCcc-c-----C---CC----HHHHHHHHHHHHHHHHHHc
Confidence 777653112232 334456654322 232 2111 0 1 11 1222233345566666653
Q ss_pred CCCCCCeEEEeecCceeecCCCCHHH
Q 046612 184 QPYQMGKIGITILTHWFEPKFKTAAS 209 (223)
Q Consensus 184 ~~~~~~kvGi~~~~~~~~P~~~~~~D 209 (223)
.++..||+.++.....+...+.++
T Consensus 206 --g~d~~i~vris~~~~~~~g~~~~e 229 (327)
T cd02803 206 --GPDFPVGVRLSADDFVPGGLTLEE 229 (327)
T ss_pred --CCCceEEEEechhccCCCCCCHHH
Confidence 356689998887655443333444
No 154
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=57.23 E-value=78 Score=28.57 Aligned_cols=95 Identities=12% Similarity=0.154 Sum_probs=60.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCC-CChhHHHHHHHHHHHHHhCCCe-eEEecCCCCCchhhhhhhCCC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGK-ISGG-VNPLGVKFYKDLINELLANDIK-PFVTLLHFDPPQALEEEYGGF 94 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g~-~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~~~~gg~ 94 (223)
-++.++.|+++|+|.+-+++ ..+-++-- .-|+ .+. +-..+.++.+++.|+. +-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~~~---~~~~~ai~~~~~~g~~~v~~Dli-~GlPg--------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTHSS---SKAIDAVQECSEHGFSNLSIDLI-YGLPT--------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 47889999999999655555 33322210 0022 233 4457788899999997 567765 56662
Q ss_pred CChHhHHHHHHHHHHHHHHhCCCcccEEeecCCccc
Q 046612 95 LSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM 130 (223)
Q Consensus 95 ~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~ 130 (223)
++.+.|.+-.+.+.+-=-+.|..+...=||...
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 245566666666554323568888888888754
No 155
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=57.22 E-value=66 Score=28.82 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCC-CChhHHHHHHHHHHHHHhCCCee-EEecCCCCCchhhhhhhC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGG-VNPLGVKFYKDLINELLANDIKP-FVTLLHFDPPQALEEEYG 92 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~-~n~~~l~~y~~~i~~l~~~gi~p-~vtL~h~~~P~~l~~~~g 92 (223)
.-++.++.|+++|++.+-+++ +-+ ++...- |+ .+. +-+.+.|+.+++.|+.+ -++|. +++|.
T Consensus 98 lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~~~~---~~~~~ai~~l~~~G~~~v~~dli-~GlPg------- 163 (360)
T TIGR00539 98 ITAEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQHSA---KNIAPAIETALKSGIENISLDLM-YGLPL------- 163 (360)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCChHHHHHh---CCCCCH---HHHHHHHHHHHHcCCCeEEEecc-CCCCC-------
Confidence 357889999999999666666 232 233222 32 233 55688999999999975 46664 66662
Q ss_pred CCCChHhHHHHHHHHHHHHHHhC-CCcccEEeecCCc
Q 046612 93 GFLSPKIVKDFVDYGDFCFKTYG-DRVKLWASMNEPN 128 (223)
Q Consensus 93 g~~~~~~~~~f~~y~~~~~~~~~-~~v~~w~t~NEp~ 128 (223)
++.+.|.+-.+.+.+ ++ +.+..+...=||+
T Consensus 164 -----qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 -----QTLNSLKEELKLAKE-LPINHLSAYALSVEPN 194 (360)
T ss_pred -----CCHHHHHHHHHHHHc-cCCCEEEeecceEcCC
Confidence 123444444444443 33 3455444444554
No 156
>PRK01060 endonuclease IV; Provisional
Probab=57.16 E-value=77 Score=26.91 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=38.2
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCee
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKP 74 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p 74 (223)
+.-+++-++.++++|++.+=+.+.-++.... +.++.+. .+++-+.+.++||++
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~----~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNPQQWKR----KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCCCCCcC----CCCCHHH---HHHHHHHHHHcCCCC
Confidence 3347889999999999999997765544332 3566644 466666788999984
No 157
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=56.95 E-value=29 Score=29.65 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=37.7
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+|++...+.|++.+|+.++-+.+ .-..+.++.+++.|+++.+++.
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s~~---------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCTEA---------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechhhH---------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 4799999999999999988766533 2347788999999999888873
No 158
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=56.84 E-value=55 Score=29.26 Aligned_cols=106 Identities=22% Similarity=0.218 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCC--CEEEecccccccccCCCCCCCCChhHHHHH--HHHHHHHHhCCCeeEEecCCCCCc--------hh
Q 046612 19 KEDIKLMKKVGL--DSFRFSISWTRILPKGKISGGVNPLGVKFY--KDLINELLANDIKPFVTLLHFDPP--------QA 86 (223)
Q Consensus 19 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g~~n~~~l~~y--~~~i~~l~~~gi~p~vtL~h~~~P--------~~ 86 (223)
.+-++.+++.|+ +++=+.+.|..-. + +=.+|.+..--- +++|+.|+++|+++++.++-+-.+ .+
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~~--~--~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~ 102 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDRR--R--DFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPY 102 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccCc--c--ceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHH
Confidence 344566776665 4566666775321 1 012333222223 899999999999999887644322 11
Q ss_pred hh---hh----------h-----------CCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcc
Q 046612 87 LE---EE----------Y-----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (223)
Q Consensus 87 l~---~~----------~-----------gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~ 129 (223)
-+ .. + -.++||+..+.|.+..+.+...+|- .-+|.=+|||..
T Consensus 103 ~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 103 DRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 10 00 0 1266888888888777776665542 345888999964
No 159
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=56.63 E-value=25 Score=32.69 Aligned_cols=63 Identities=13% Similarity=0.267 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe-eEEecCCCCCch
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYKDLINELLANDIK-PFVTLLHFDPPQ 85 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~ 85 (223)
.-++.+++|+++|++.+-+++ +=+ ++.-.- +...+. +.+.+.++.+++.|++ +-++|. +++|.
T Consensus 149 l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l--~r~~~~---~~~~~ai~~l~~~G~~~v~~dli-~GlPg 214 (455)
T TIGR00538 149 ITKDVIDALRDEGFNRLSFGVQDFNKEVQQAV--NRIQPE---EMIFELMNHAREAGFTSINIDLI-YGLPK 214 (455)
T ss_pred CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh--CCCCCH---HHHHHHHHHHHhcCCCcEEEeEE-eeCCC
Confidence 357889999999999666665 222 222211 122343 5568899999999996 445543 45554
No 160
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=56.14 E-value=27 Score=31.29 Aligned_cols=59 Identities=25% Similarity=0.449 Sum_probs=50.3
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
+.+.+|++|.+++.|=+-|. |++ +-.+|..-.++.+++.++|++.+|--++=+..++.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDG--DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 57889999999999999886 554 257888888999999999999999999988766544
No 161
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=55.75 E-value=44 Score=26.44 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=40.7
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
....++-+++++.+|++.+++...+-...+... ...--...++.++++.+.+.++|+++.+=
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD-TEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS-HHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCC-HHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 345678899999999999999976411111110 00111234677888888889999887764
No 162
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=55.49 E-value=31 Score=30.99 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=60.9
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC--CCCchhhhhh-----
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH--FDPPQALEEE----- 90 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h--~~~P~~l~~~----- 90 (223)
..+|++...+.|++.+|+....++. +--.+.|+.+++.|+++.+.+.. -..|..+.+.
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~ 154 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLME 154 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHH
Confidence 3689999999999999998755432 22488899999999998887753 2234333211
Q ss_pred -h----------CCCCChHhHHHHHHHHHHHHHHhCCCccc-EEeecCCcc
Q 046612 91 -Y----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKL-WASMNEPNG 129 (223)
Q Consensus 91 -~----------gg~~~~~~~~~f~~y~~~~~~~~~~~v~~-w~t~NEp~~ 129 (223)
+ .|... ++...++.+.+-+++++.+.. ...-|-..+
T Consensus 155 ~~Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 202 (337)
T PRK08195 155 SYGAQCVYVVDSAGALL---PEDVRDRVRALRAALKPDTQVGFHGHNNLGL 202 (337)
T ss_pred hCCCCEEEeCCCCCCCC---HHHHHHHHHHHHHhcCCCCeEEEEeCCCcch
Confidence 1 23333 456667777777788644443 345555544
No 163
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.27 E-value=22 Score=30.18 Aligned_cols=58 Identities=9% Similarity=-0.040 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
.++.-+++.+.+|.+.+++........+.. ...-...++.++.+.+.+.++||+..+=
T Consensus 91 ~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 455567899999999999964322111111 1111345677888899999999987654
No 164
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=55.00 E-value=98 Score=27.32 Aligned_cols=106 Identities=22% Similarity=0.249 Sum_probs=63.0
Q ss_pred HHHHHHHHcCC--CEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC-----chhhhhh--
Q 046612 20 EDIKLMKKVGL--DSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP-----PQALEEE-- 90 (223)
Q Consensus 20 eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~-----P~~l~~~-- 90 (223)
+-++.+++.++ +++=+++.|..- .+ .=.+|.+..---.++|+.|+++|+++++.++-+-. |...+..
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~~--~~--~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~ 103 (317)
T cd06600 28 EVVDIMQKEGFPYDVVFLDIHYMDS--YR--LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDK 103 (317)
T ss_pred HHHHHHHHcCCCcceEEEChhhhCC--CC--ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHC
Confidence 33555666664 566666667531 11 01344433334578999999999998887653311 2211100
Q ss_pred ----------------------hCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCccc
Q 046612 91 ----------------------YGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM 130 (223)
Q Consensus 91 ----------------------~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~ 130 (223)
+-.|.||+..+.|.+..+.+....|- .-+|.=+|||..+
T Consensus 104 ~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 104 GKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred CEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 01267899999998877776544432 3358889999643
No 165
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=54.55 E-value=26 Score=29.93 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
+++.-+++++++|.+.++++-. +..+.+. ..+.-...++.++++.+.++++||.+.+=.
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGY--DVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCc--ccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 3566789999999999998521 1111110 011112346777888899999999888754
No 166
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=54.38 E-value=21 Score=32.73 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=45.5
Q ss_pred CCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 6 STGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 6 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
...-.|+|-+--+++-|+...+.|++++ |+|- |.+.. +++|+.+.++||.-+.|
T Consensus 330 ~G~vlASDAFFPF~D~Id~Aa~~GV~aI--------iQPG----GSiRD------~evI~aane~giaMvfT 383 (390)
T PRK07106 330 TGVALGSDAFFPFGDNIERAAKSGVKYI--------AQPG----GSIRD------DNVIETCNKYGMTMAFT 383 (390)
T ss_pred CCeEEEecccCCCCchHHHHHHcCCEEE--------ECCC----CCCCc------HHHHHHHHHhCCEEEEC
Confidence 3445678988899999999999999987 7886 56666 78999999999998876
No 167
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=54.30 E-value=1.3e+02 Score=25.43 Aligned_cols=54 Identities=11% Similarity=0.130 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEE
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFV 76 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 76 (223)
-+++-++.++++|++.+=+++.=.+..+.. ..++. .....+-+.+.++||++..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLAR---LDWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCccccccc---ccCCH---HHHHHHHHHHHHcCCCceE
Confidence 578899999999999998875411111111 23444 3457888899999999764
No 168
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=54.27 E-value=72 Score=28.62 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=49.7
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
+.+.+|++|.+++.|=+-|. |+. +...|..-.++.+++.++|++.+|--++=+.-+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDD--AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCC--ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 47889999999999998884 443 256888888999999999999999999988777654
No 169
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=54.09 E-value=41 Score=29.38 Aligned_cols=95 Identities=13% Similarity=0.212 Sum_probs=63.0
Q ss_pred cccChHHH-HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC---C-ch---
Q 046612 14 FYHHYKED-IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD---P-PQ--- 85 (223)
Q Consensus 14 ~y~~~~eD-i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~---~-P~--- 85 (223)
+|.-|.++ .+.+++.+-+.=-++..|-.|-|++ .+.. ....++++.++++|+++++.+..++ . +.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g----~~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~ 79 (313)
T cd02874 7 YYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG----TLTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAH 79 (313)
T ss_pred EEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC----CCCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH
Confidence 34444443 6677777766677888999998865 3332 1236889999999999999997654 1 10
Q ss_pred -hh----------------hhhh--CC----CC--ChHhHHHHHHHHHHHHHHhC
Q 046612 86 -AL----------------EEEY--GG----FL--SPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 86 -~l----------------~~~~--gg----~~--~~~~~~~f~~y~~~~~~~~~ 115 (223)
-+ ..+| .| |+ .++..+.|..+.+.+..++.
T Consensus 80 ~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~ 134 (313)
T cd02874 80 AVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLH 134 (313)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhh
Confidence 01 0112 24 44 34667889999999999886
No 170
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=53.91 E-value=23 Score=30.96 Aligned_cols=63 Identities=27% Similarity=0.339 Sum_probs=49.4
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
-.--++|++...++|++.+-+.++=|..+-.... +.=-++.++.+.++++.++++|+++-+++
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~-~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKL-KMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3346899999999999999988866655443211 33456789999999999999999999888
No 171
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=53.43 E-value=61 Score=29.40 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=59.6
Q ss_pred CCcccChHHHHHHHHHcCCCEEEecccccccccCC--CCCC--CCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhh
Q 046612 12 SGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKG--KISG--GVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQAL 87 (223)
Q Consensus 12 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~--~~~g--~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l 87 (223)
++.+-.-++=++.+.++|++-+-+|++ .+-|.. ...| .+|- ++-.++.+.+.+.||.+++ .|.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYdv---~kvle~aE~i~~a~idvlI------aPv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYDV---KKVLEVAEYIANAGIDVLI------APVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccCH---HHHHHHHHHHHhCCCCEEE------eeeec
Confidence 344455677789999999998777773 343431 1124 4444 7779999999999999998 47887
Q ss_pred hhhhCCCCChHhHHHHHHHHHHHH
Q 046612 88 EEEYGGFLSPKIVKDFVDYGDFCF 111 (223)
Q Consensus 88 ~~~~gg~~~~~~~~~f~~y~~~~~ 111 (223)
- | .|.+-...+..||+.+-
T Consensus 266 P----G-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 P----G-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred C----C-cChHHHHHHHHHHHHhC
Confidence 3 4 36666788888888764
No 172
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=53.27 E-value=24 Score=33.32 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=45.9
Q ss_pred CCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
..-.|+|-+--+++-|+.+++.|++++ |+|- |..+. +++|+.+-++||.-+.|
T Consensus 456 Gav~ASDAFFPF~D~i~~aA~aGi~aI--------IqPG----GSirD------~eVI~aAde~giaMvfT 508 (515)
T COG0138 456 GAVLASDAFFPFPDGIDAAAKAGIKAI--------IQPG----GSIRD------QEVIAAADEHGIAMVFT 508 (515)
T ss_pred CcEEeecccCCCcchHHHHHHcCCeEE--------ECCC----Ccccc------HHHHHHHHhcCcEEEEc
Confidence 455789988899999999999999987 7886 56666 78999999999998876
No 173
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.17 E-value=1.4e+02 Score=25.28 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeE
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPF 75 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~ 75 (223)
.+++-++.++++|++.+=+++.=....+.+ ..++. ...+.+-+.+.++||++.
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR---LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc---cCCCH---HHHHHHHHHHHHcCCcee
Confidence 578899999999999998864211111111 12344 345788888999999974
No 174
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=52.38 E-value=1.2e+02 Score=26.83 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=59.6
Q ss_pred HHHHHHHHHcC--CCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC---Cchhhh--hh-
Q 046612 19 KEDIKLMKKVG--LDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD---PPQALE--EE- 90 (223)
Q Consensus 19 ~eDi~l~~~lG--~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~---~P~~l~--~~- 90 (223)
.+-++.+++.| ++++=+.+.|..-.-.+ +=.+|.+..---.++|+.|+++|+++++.++-+- .+.+-+ ++
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~--~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g 104 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWPKQGWG--EWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKG 104 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhcCCCce--eEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCC
Confidence 34456666664 55665555543210000 0123433333458999999999999988764321 121100 00
Q ss_pred --------------------hCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccc
Q 046612 91 --------------------YGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMV 131 (223)
Q Consensus 91 --------------------~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~ 131 (223)
+-.+.||+..+.|.+..+..+...|= --+|+=+|||....
T Consensus 105 ~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 105 YLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred EEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCccC
Confidence 01256788888776655544433332 44588999998653
No 175
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=51.92 E-value=97 Score=27.11 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcCCCEEE-eccc-c-----cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 18 YKEDIKLMKKVGLDSFR-FSIS-W-----TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R-~si~-W-----~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
.+|.++.|+++|++.+- .+.+ - .++.|. ..+. +.+.+.++.+++.||++..++. +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~-----~~t~---~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN-----KLSS---DEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC-----CCCH---HHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 47889999999999884 2321 1 122232 2333 5567999999999999988764 4444
No 176
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=51.87 E-value=1.1e+02 Score=23.92 Aligned_cols=59 Identities=15% Similarity=0.167 Sum_probs=39.3
Q ss_pred ccChHHHHHHHHHcCCCEEEeccc-ccc-cccCCCCCCCCChhHHHHHHHHHHHHHhCC-CeeEEec
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSIS-WTR-ILPKGKISGGVNPLGVKFYKDLINELLAND-IKPFVTL 78 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~-W~r-i~P~~~~~g~~n~~~l~~y~~~i~~l~~~g-i~p~vtL 78 (223)
...-++.++.|+++|++.+.+|+. ++. +...- ....+. +.+.+.|+.+.+.| +.+.+.+
T Consensus 96 ~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~--~~~~~~---~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 96 GTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAI--NRGHTV---EDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred ccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHh--cCCCCH---HHHHHHHHHHHHhCCcceEEeE
Confidence 334578899999999998999885 532 22111 122233 67788999999999 6555443
No 177
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=51.27 E-value=35 Score=31.74 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCC--CCCCCCChhHHHHHHHHHHHHHhCCCe-eEEecCCCCCch
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKG--KISGGVNPLGVKFYKDLINELLANDIK-PFVTLLHFDPPQ 85 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~--~~~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~ 85 (223)
.-++.+++|+++|++.+-+++ ...-|+- ..+...+. +...+.++.+++.|++ +-++|. +++|.
T Consensus 150 lt~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~~~~---~~~~~ai~~lr~~G~~~v~~dli-~GlPg 215 (453)
T PRK13347 150 VTAEMLQALAALGFNRASFGV--QDFDPQVQKAINRIQPE---EMVARAVELLRAAGFESINFDLI-YGLPH 215 (453)
T ss_pred CCHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCCCCH---HHHHHHHHHHHhcCCCcEEEeEE-EeCCC
Confidence 457899999999999666665 3332211 00122333 4568889999999997 445553 45553
No 178
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=51.22 E-value=1.5e+02 Score=25.11 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=38.7
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeE
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPF 75 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~ 75 (223)
..+++-+++++++|++.+=+++.-....|.. -.++. .....+-+.+.++||++.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~---~~~~~---~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR---LDWSR---EQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc---cCCCH---HHHHHHHHHHHHcCCCce
Confidence 3689999999999999999976543222222 12333 445788889999999975
No 179
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.99 E-value=90 Score=27.52 Aligned_cols=110 Identities=17% Similarity=0.064 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCC--CEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC---chhhh--hh-
Q 046612 19 KEDIKLMKKVGL--DSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP---PQALE--EE- 90 (223)
Q Consensus 19 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~---P~~l~--~~- 90 (223)
.+-++.+++.|+ +++=+.+.|..........=.+|.+..---+++|+.|+++|+++++.++-+-. |..-+ ++
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 344567777776 45555556654311100001233333233489999999999999987764322 22100 00
Q ss_pred -----------h-----------CCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcc
Q 046612 91 -----------Y-----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (223)
Q Consensus 91 -----------~-----------gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~ 129 (223)
+ -.++||+..+.|.+..+......|- .-+|+=+|||.+
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 0 0146888888887766555544432 345888999974
No 180
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=50.15 E-value=50 Score=27.57 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=35.6
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
..+++++|++.+=++-|=.| +.+. | ..+-+..+.++||+|++++
T Consensus 74 ~~mLkd~G~~~viiGHSERR-f~Et------d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR-MKLA------D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEECcccCC-CCcc------H------HHHHHHHHHHCCCEEEEEE
Confidence 57889999999999888777 3332 1 3777889999999999999
No 181
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=49.73 E-value=1.3e+02 Score=27.37 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=51.9
Q ss_pred HHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHH
Q 046612 26 KKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVD 105 (223)
Q Consensus 26 ~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ 105 (223)
.+.|++.+|+ -| |.+... -+..+.+++.++++|+..=+..+|-.++.-+.++||+-+-+..++--.+
T Consensus 98 ~~~G~~~iRI-------NP-----GNig~~-~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~ 164 (360)
T PRK00366 98 AEAGADALRI-------NP-----GNIGKR-DERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164 (360)
T ss_pred HHhCCCEEEE-------CC-----CCCCch-HHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHH
Confidence 4789999965 34 555220 1567999999999999999999999999999888865333334555555
Q ss_pred HHHHH
Q 046612 106 YGDFC 110 (223)
Q Consensus 106 y~~~~ 110 (223)
+++.+
T Consensus 165 ~~~~l 169 (360)
T PRK00366 165 HAKIL 169 (360)
T ss_pred HHHHH
Confidence 55543
No 182
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=49.04 E-value=82 Score=28.48 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHH
Q 046612 58 KFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFC 110 (223)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~ 110 (223)
+..+.+++.++++|+-.=+..+|-.++.-+.++||+-+.+..++--.++++.|
T Consensus 108 e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 108 ERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999988887533333455555555543
No 183
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=48.62 E-value=31 Score=33.92 Aligned_cols=117 Identities=16% Similarity=0.095 Sum_probs=53.3
Q ss_pred CCcccCCcccChHHHH-HHHH----HcCCCEEEeccc-----ccccccCCC-CCCCCCh-hHHHHHHHHHHHHHhCCCee
Q 046612 7 TGDIASGFYHHYKEDI-KLMK----KVGLDSFRFSIS-----WTRILPKGK-ISGGVNP-LGVKFYKDLINELLANDIKP 74 (223)
Q Consensus 7 ~~~~a~d~y~~~~eDi-~l~~----~lG~~~~R~si~-----W~ri~P~~~-~~g~~n~-~~l~~y~~~i~~l~~~gi~p 74 (223)
++..=.|+-+.++.+| +.|- .+.++.+.+-|- =+--||.-. .+++.|- .+-+ =.+++++++++=..
T Consensus 51 tSrLL~dY~e~~r~qILd~LFkp~~Gasl~~lKvEiGgD~nst~GtEPshm~~~~d~n~~RGye--~~L~~eAKkrNP~i 128 (669)
T PF02057_consen 51 TSRLLMDYPEPQRSQILDYLFKPNFGASLQILKVEIGGDANSTSGTEPSHMHSEDDENYFRGYE--WWLMAEAKKRNPNI 128 (669)
T ss_dssp TTTTTTT--TTHHHHHHHHHHSTTTSS--SEEEEEE--SSB-SSSB---S-SSTT---S-SSSH--HHHHHHHHHH-TT-
T ss_pred cchhhccCCchhHHHHHHHHhCCCCCceeeEEEEEecCCCCCCCCCCCcccccccccccccChh--hhhHHHHHhhCCCC
Confidence 3344456666555443 4442 234777777663 233344421 0122221 1111 14778888887666
Q ss_pred EEecCCCCCchhhhhhhCCCC----ChH-hHHHHHHHHHHHHHHhCCCcccEEeecCCc
Q 046612 75 FVTLLHFDPPQALEEEYGGFL----SPK-IVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 75 ~vtL~h~~~P~~l~~~~gg~~----~~~-~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
-+....|..|.|+. .||. +++ ++....++..-+.+.+|=.++|--++||=.
T Consensus 129 kl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~ 184 (669)
T PF02057_consen 129 KLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERG 184 (669)
T ss_dssp EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS-
T ss_pred eEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccC
Confidence 66667899999997 3443 333 334445666677888998899988999954
No 184
>PRK08508 biotin synthase; Provisional
Probab=48.59 E-value=44 Score=28.94 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHcCCCEEEecccc-cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISW-TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W-~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
..+|.++.|+++|++.|-.+++= ++++|.-. ..-++ +..-+.++.+++.||++--++
T Consensus 100 ~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~--~~~~~---~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 100 ASVEQLKELKKAGIFSYNHNLETSKEFFPKIC--TTHTW---EERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CCHHHHHHHHHcCCCEEcccccchHHHhcCCC--CCCCH---HHHHHHHHHHHHcCCeeccee
Confidence 36999999999999999988732 44666541 22333 445667788999999765444
No 185
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=48.59 E-value=34 Score=29.07 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=36.8
Q ss_pred hHHHHHHHHHcCCCEEEeccccccc-ccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRI-LPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri-~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
.++-++.+++||++.+|+. ..... .|.. ...-...++.++++.+.+.++||+..+=-
T Consensus 96 ~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLA-GYDVYYEEKS---EETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHhCCCEEEEC-Cccccccccc---HHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4556788899999999974 11111 1111 11113446678888999999999877744
No 186
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=48.44 E-value=1.1e+02 Score=26.58 Aligned_cols=106 Identities=7% Similarity=0.063 Sum_probs=69.8
Q ss_pred hHHHHHHHHHcCCCEEEeccc-ccccccCCCCCC-C---C-ChhHHHHHHHHHHHHHhCC---CeeEEecCCCCCchhhh
Q 046612 18 YKEDIKLMKKVGLDSFRFSIS-WTRILPKGKISG-G---V-NPLGVKFYKDLINELLAND---IKPFVTLLHFDPPQALE 88 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~-W~ri~P~~~~~g-~---~-n~~~l~~y~~~i~~l~~~g---i~p~vtL~h~~~P~~l~ 88 (223)
-.+.|+..-++|.|++=+.|. |+-=.|.-+.-| + . +...-+.++++++.+++.- -.--++|. ||.
T Consensus 9 ~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv------~lD 82 (265)
T cd08576 9 DLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFV------WLD 82 (265)
T ss_pred cHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEE------EEE
Confidence 356788889999999999995 533333211001 1 1 3334466777887777653 12222222 233
Q ss_pred hhhCCCCChHhHHHHHHHHHHHHHHhCCC---cccEEeecCCcc
Q 046612 89 EEYGGFLSPKIVKDFVDYGDFCFKTYGDR---VKLWASMNEPNG 129 (223)
Q Consensus 89 ~~~gg~~~~~~~~~f~~y~~~~~~~~~~~---v~~w~t~NEp~~ 129 (223)
-|.++.......+...+.|+.+.++|+.. +..++++..|.+
T Consensus 83 lK~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 83 LKNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 34456666788999999999999999955 888999999985
No 187
>PTZ00445 p36-lilke protein; Provisional
Probab=48.36 E-value=44 Score=28.25 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=39.0
Q ss_pred HHHHHHcCCCEEEeccccccccc-CCCCCCCCChh---------HHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILP-KGKISGGVNPL---------GVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P-~~~~~g~~n~~---------~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
++++++.|++++=+.+.=.-|-- +| |-+++. .=.-...++..|.+.||.+.|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg---G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG---GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc---cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68899999999998887654431 12 333332 223468899999999999887664
No 188
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=47.54 E-value=63 Score=26.21 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=46.2
Q ss_pred cccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 9 DIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 9 ~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
.+|.|.+-.-...+..+..+.++.++++.++-+-.... .......+.+++.++..|++++++
T Consensus 148 ~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 148 RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTD-------PEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccC-------hhHHHHHHHHHHHHHHCCCeEEEe
Confidence 45666666666778899999999999998875544332 123356788999999999999975
No 189
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=46.82 E-value=30 Score=34.28 Aligned_cols=65 Identities=18% Similarity=0.449 Sum_probs=43.5
Q ss_pred ccChHHH-HHHHHHcCCCEEEecc--cc-ccc-----------ccCCCCCCCCC-hhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 15 YHHYKED-IKLMKKVGLDSFRFSI--SW-TRI-----------LPKGKISGGVN-PLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 15 y~~~~eD-i~l~~~lG~~~~R~si--~W-~ri-----------~P~~~~~g~~n-~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
|.-+.|+ +..+|+||.|++-+=- +- +.. -|... -|..+ +.-+.=++.||++|...||++++++
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssr-Ygt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSR-YGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccccc-ccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 7777676 9999999999998421 22 122 12211 12222 1224457999999999999999998
Q ss_pred CC
Q 046612 79 LH 80 (223)
Q Consensus 79 ~h 80 (223)
.|
T Consensus 332 V~ 333 (757)
T KOG0470|consen 332 VH 333 (757)
T ss_pred hh
Confidence 76
No 190
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.75 E-value=1.2e+02 Score=25.51 Aligned_cols=52 Identities=6% Similarity=-0.017 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEE
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFV 76 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 76 (223)
..++.+++++++|++.+=+.......++. .+... .-+++-+.+.++||++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~-----~~~~~---~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAP-----DLKAG---GIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcccccc-----ccCch---HHHHHHHHHHHcCCeEEE
Confidence 48999999999999999884332222211 12222 246777788899998754
No 191
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=46.42 E-value=83 Score=28.58 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHcCCC-------EEE-------ecccccccccCCCCCCCCC-hhHHHHHHHHHHHHHhCCCeeEEecCCC
Q 046612 17 HYKEDIKLMKKVGLD-------SFR-------FSISWTRILPKGKISGGVN-PLGVKFYKDLINELLANDIKPFVTLLHF 81 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~-------~~R-------~si~W~ri~P~~~~~g~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 81 (223)
.-.|-.+.++++|-+ .+| .+.+|.-+.-+|..+|.+| .+||...++++-++.+.|+...--+..-
T Consensus 69 ~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~Glp~atE~ld~ 148 (353)
T PRK12755 69 AALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVELGLPLATEALDP 148 (353)
T ss_pred HHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHhCCCEEEEecCc
Confidence 344445666677654 565 7788999875554468887 7999999999999999999877666555
Q ss_pred CCchhhhh
Q 046612 82 DPPQALEE 89 (223)
Q Consensus 82 ~~P~~l~~ 89 (223)
..|+.+.+
T Consensus 149 ~~~~y~~D 156 (353)
T PRK12755 149 ISPQYLGD 156 (353)
T ss_pred ccHHHHHh
Confidence 55665543
No 192
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=46.11 E-value=1.2e+02 Score=30.60 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCC--EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC---CCCCc----------
Q 046612 20 EDIKLMKKVGLD--SFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL---HFDPP---------- 84 (223)
Q Consensus 20 eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---h~~~P---------- 84 (223)
+=++.+.++|+. ..=..|.|-.-.-+= .+|....-...++++.|.++|++.++++. +-+..
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~ykDF----Tvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~ 390 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYKDF----TVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAK 390 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhcccce----eeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhh
Confidence 345677788877 555555553222221 23443334478999999999999999886 22222
Q ss_pred -hhhhhh----------------hCCCCChHhHHHHHHHHHHHHHHhCCCcc---cEEeecCCccccc
Q 046612 85 -QALEEE----------------YGGFLSPKIVKDFVDYGDFCFKTYGDRVK---LWASMNEPNGMVM 132 (223)
Q Consensus 85 -~~l~~~----------------~gg~~~~~~~~~f~~y~~~~~~~~~~~v~---~w~t~NEp~~~~~ 132 (223)
.|.... +..++|+.+++.| ...+++|.+.|. +|+-+|||.-++.
T Consensus 391 ~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww----~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 391 DVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW----LDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred ceeeecccCchhhhcccCCCcccccccCCchHHHHH----HHHHHhhcccCCccceEEECCCcccCCC
Confidence 011110 1125666555544 445568888766 6999999976653
No 193
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=46.01 E-value=45 Score=31.81 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=44.4
Q ss_pred CCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 6 STGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 6 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
...-+|+|..--+.+-++.|++.|++++ ++|. |.++. +++|+.+.++||..+.|
T Consensus 453 ~gav~aSDafFPf~Dtie~aa~~Gv~aI--------iqPg----GSirD------~evI~aAne~gIamvfT 506 (513)
T PRK00881 453 KGAVLASDAFFPFRDGVEAAAKAGITAI--------IQPG----GSIRD------EEVIAAADEHGIAMVFT 506 (513)
T ss_pred CCeEEEeeCCCCchhHHHHHHHcCCeEE--------EeCC----CCCCh------HHHHHHHHHcCCEEEEC
Confidence 3445678888888999999999999986 6676 45666 78999999999998887
No 194
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=45.98 E-value=68 Score=28.77 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=47.5
Q ss_pred CcccCCccc--ChHHHHHHHHHcCCCEEEeccc----cccc---ccCCCC------CCCCChhHHHHHHHHHHHHHhCCC
Q 046612 8 GDIASGFYH--HYKEDIKLMKKVGLDSFRFSIS----WTRI---LPKGKI------SGGVNPLGVKFYKDLINELLANDI 72 (223)
Q Consensus 8 ~~~a~d~y~--~~~eDi~l~~~lG~~~~R~si~----W~ri---~P~~~~------~g~~n~~~l~~y~~~i~~l~~~gi 72 (223)
-|+|-.++. ..++-|+.|+..++|.+.+-++ |.-= .|+-+. +|.+..+. ++++|+.++++||
T Consensus 8 lDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~d---i~eiv~yA~~rgI 84 (348)
T cd06562 8 LDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPED---VKEIVEYARLRGI 84 (348)
T ss_pred eeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHH---HHHHHHHHHHcCC
Confidence 355554444 2556689999999999987763 4321 122110 13466644 5999999999999
Q ss_pred eeEEecCCCCCch
Q 046612 73 KPFVTLLHFDPPQ 85 (223)
Q Consensus 73 ~p~vtL~h~~~P~ 85 (223)
++|.-+ |+|.
T Consensus 85 ~vIPEI---D~PG 94 (348)
T cd06562 85 RVIPEI---DTPG 94 (348)
T ss_pred EEEEec---cCch
Confidence 999865 5665
No 195
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=45.93 E-value=2.1e+02 Score=25.22 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=46.4
Q ss_pred cccCCccc--ChHHHHHHHHHcCCCEEEecc--cccc---cccCCC---------------------CCCCCChhHHHHH
Q 046612 9 DIASGFYH--HYKEDIKLMKKVGLDSFRFSI--SWTR---ILPKGK---------------------ISGGVNPLGVKFY 60 (223)
Q Consensus 9 ~~a~d~y~--~~~eDi~l~~~lG~~~~R~si--~W~r---i~P~~~---------------------~~g~~n~~~l~~y 60 (223)
|+|-.++. ..++=|+.|+..++|.+-+-+ +|.- ..|..+ ..|.+..+ =+
T Consensus 8 D~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~---di 84 (326)
T cd06564 8 DVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKE---EF 84 (326)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHH---HH
Confidence 44444443 255668999999999998744 2321 112110 02566664 45
Q ss_pred HHHHHHHHhCCCeeEEecCCCCCchh
Q 046612 61 KDLINELLANDIKPFVTLLHFDPPQA 86 (223)
Q Consensus 61 ~~~i~~l~~~gi~p~vtL~h~~~P~~ 86 (223)
+++++.++++||++|.-+ |+|..
T Consensus 85 ~eiv~yA~~rgI~vIPEI---D~PGH 107 (326)
T cd06564 85 KELIAYAKDRGVNIIPEI---DSPGH 107 (326)
T ss_pred HHHHHHHHHcCCeEeccC---CCcHH
Confidence 999999999999998754 56653
No 196
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=45.89 E-value=2.4e+02 Score=25.78 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=46.1
Q ss_pred cCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEE-ecCCCCCchhhhh
Q 046612 11 ASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFV-TLLHFDPPQALEE 89 (223)
Q Consensus 11 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v-tL~h~~~P~~l~~ 89 (223)
++--.-...+-++.++++|++.+=+ ....+.|-+ -...... ...+++-+.|.++||++.. +..-+..|.+.
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~---~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~-- 98 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTF--HDDDLIPFG---APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVFK-- 98 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEe--cccccCCCC---CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcccc--
Confidence 3333446788899999999998843 334455643 1111111 3467788889999999654 44223334331
Q ss_pred hhCCCCCh
Q 046612 90 EYGGFLSP 97 (223)
Q Consensus 90 ~~gg~~~~ 97 (223)
.|+..++
T Consensus 99 -~g~las~ 105 (382)
T TIGR02631 99 -DGGFTSN 105 (382)
T ss_pred -CCCCCCC
Confidence 2566654
No 197
>PRK09389 (R)-citramalate synthase; Provisional
Probab=45.50 E-value=37 Score=32.12 Aligned_cols=64 Identities=9% Similarity=0.003 Sum_probs=49.4
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
..-++|++.+.+.|++.+++.++-|.+.=.... +.--.+.++...+.++.+++.|+++.+++-.
T Consensus 73 r~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 73 RAVKVDIDAALECDVDSVHLVVPTSDLHIEYKL-KKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred ccCHHHHHHHHhCCcCEEEEEEccCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 345899999999999999999977766433211 3334577888899999999999998887764
No 198
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=44.76 E-value=1.1e+02 Score=29.79 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=32.6
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-++|+++..+.|++.+|+..+-+.+ +-....++.++++|..+.+++.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~ 144 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV---------------RNMEVAIKAAKKAGAHVQGTIS 144 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH---------------HHHHHHHHHHHHcCCEEEEEEE
Confidence 3456789999999999998765443 2235556667777777666653
No 199
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=44.63 E-value=37 Score=32.32 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=45.7
Q ss_pred CCCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 6 STGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 6 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
...-.|+|-+--+++-++.+++.|++++ |+|- |.+.. +++|+.+.++||.-+.|
T Consensus 451 ~G~vlASDAFFPF~D~ve~aa~aGi~aI--------iQPG----GSiRD------~evI~aa~e~giaMvfT 504 (511)
T TIGR00355 451 KGSSLASDAFFPFRDGVEEAAAAGITCI--------IQPG----GSMRD------EDSIWAADEHGIVMVFT 504 (511)
T ss_pred cCcEEEeccccCCCccHHHHHHcCCEEE--------EcCC----CCCCc------HHHHHHHHHhCCEEEEC
Confidence 4556789988899999999999999987 7786 56666 78999999999998876
No 200
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=44.21 E-value=27 Score=33.06 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=39.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCC-CChhHHHHHHHHHHHHHhCCC-eeEEecCCCCCc
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGK-ISGG-VNPLGVKFYKDLINELLANDI-KPFVTLLHFDPP 84 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g~-~n~~~l~~y~~~i~~l~~~gi-~p~vtL~h~~~P 84 (223)
-++-++.|+++|++ |+||.-...-++-- .-|+ .+. +-..+.++.+++.|+ .+-++|. +++|
T Consensus 268 t~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR~ht~---e~v~~ai~~ar~~Gf~~In~DLI-~GLP 331 (488)
T PRK08207 268 TEEKLEVLKKYGVD--RISINPQTMNDETLKAIGRHHTV---EDIIEKFHLAREMGFDNINMDLI-IGLP 331 (488)
T ss_pred CHHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCCCCCH---HHHHHHHHHHHhCCCCeEEEEEE-eCCC
Confidence 47889999999999 55554433322210 0022 233 556888999999999 5556665 5666
No 201
>PRK06256 biotin synthase; Validated
Probab=44.19 E-value=46 Score=29.40 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHcCCCEEEecc-cccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
.-++.++.|+++|++.+-+++ +=.++.+.- ...-+. +...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i--~~~~t~---~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNV--VTTHTY---EDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhc--CCCCCH---HHHHHHHHHHHHcCCeeccCe
Confidence 567899999999999998876 322344432 122233 556789999999999865543
No 202
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=44.04 E-value=48 Score=31.27 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=41.7
Q ss_pred hHHHHHHHHHcCCCEEEeccc--ccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 18 YKEDIKLMKKVGLDSFRFSIS--WTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~--W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
-++-+++|+++|++.+-++++ =.++...- +...+. +-..+.|+.++++||.+.+++. +++|
T Consensus 286 d~ell~~l~~aG~~~v~iGiES~~~~~L~~~--~K~~t~---~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTEAAAQATLDHF--RKGTTT---STNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccccCCHHHHHHh--cCCCCH---HHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 466789999999998888873 22333221 122343 4567899999999999887764 4555
No 203
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=43.84 E-value=67 Score=26.03 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=47.9
Q ss_pred CCcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 7 TGDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 7 ~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
+..+|.|.+..-..++..+.++.++.++++-++-+-... +.......+.++..++..|++++++
T Consensus 145 G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 145 GVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET-------DPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc-------ChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 345677778888888999999999999998876443332 1233366788999999999999874
No 204
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=43.69 E-value=1.3e+02 Score=25.35 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=38.1
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe-cCCCCCc
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT-LLHFDPP 84 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt-L~h~~~P 84 (223)
.++=+++++++|.+.+++...+ . |.+..+.+.-....+..+++.+.+++.||+..+= +.|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 4566788999999999874332 1 2210001111223456677777888999987774 3455444
No 205
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=43.21 E-value=82 Score=28.33 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=44.7
Q ss_pred CcccCCccc--ChHHHHHHHHHcCCCEEEecc----ccccc---ccCCCC----------------------CCCCChhH
Q 046612 8 GDIASGFYH--HYKEDIKLMKKVGLDSFRFSI----SWTRI---LPKGKI----------------------SGGVNPLG 56 (223)
Q Consensus 8 ~~~a~d~y~--~~~eDi~l~~~lG~~~~R~si----~W~ri---~P~~~~----------------------~g~~n~~~ 56 (223)
-|+|-.++. ..++-|+.|+..++|.+.+-+ +|.-- .|.-+. .|.+..
T Consensus 8 LD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~-- 85 (357)
T cd06563 8 LDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ-- 85 (357)
T ss_pred eeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH--
Confidence 355555554 256668999999999998876 23211 121000 134556
Q ss_pred HHHHHHHHHHHHhCCCeeEEec
Q 046612 57 VKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 57 l~~y~~~i~~l~~~gi~p~vtL 78 (223)
+=++++++.++++||++|.-+
T Consensus 86 -~di~eiv~yA~~rgI~VIPEI 106 (357)
T cd06563 86 -EEIREIVAYAAERGITVIPEI 106 (357)
T ss_pred -HHHHHHHHHHHHcCCEEEEec
Confidence 446999999999999988764
No 206
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=43.17 E-value=84 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 58 KFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
....+.|..|+++|+++++.+--++
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~~ 84 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGAN 84 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 3457788899999999999986544
No 207
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.78 E-value=97 Score=26.86 Aligned_cols=71 Identities=11% Similarity=0.029 Sum_probs=49.8
Q ss_pred CCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhh
Q 046612 12 SGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQAL 87 (223)
Q Consensus 12 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l 87 (223)
.+......+-.+.+|++|+..+|.+..=+|--|... +| +.. +.++.+-+.+++.||..+.+.+.-..+..+
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~g~---~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-LGE---EGLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-cHH---HHHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 344555666778899999999999975566666432 12 224 455677777899999999999875555544
No 208
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=42.71 E-value=38 Score=25.32 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCEEEeccc-cccc-ccCCCCCCCCChhHHHHHHHHHHHHHhCCCee
Q 046612 19 KEDIKLMKKVGLDSFRFSIS-WTRI-LPKGKISGGVNPLGVKFYKDLINELLANDIKP 74 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~-W~ri-~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p 74 (223)
++.++.|+++|++.+++|++ -+.- ..... ... ...+..-+.++.|.++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~-~~~---~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRII-NRG---KSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHH-SST---SHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhh-cCC---CCHHHHHHHHHHHHHcCCCc
Confidence 88999999999999999984 3321 11110 011 23366789999999999995
No 209
>PLN02923 xylose isomerase
Probab=42.65 E-value=3e+02 Score=25.95 Aligned_cols=127 Identities=19% Similarity=0.204 Sum_probs=71.6
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHH----HHhCCCee-EEecCCCCCchhhhhhhCCCC
Q 046612 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINE----LLANDIKP-FVTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~----l~~~gi~p-~vtL~h~~~P~~l~~~~gg~~ 95 (223)
-++.|.+||+..|=|- =..|.|++ ..+. +.-+..+++++. +.+.||++ +.|-.=|+.|.... |+.+
T Consensus 128 aFEf~~kLG~~y~cFH--D~Dl~Peg---~sl~-E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~---GAaT 198 (478)
T PLN02923 128 NFEFLKKLGVDRWCFH--DRDIAPDG---KTLE-ESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMH---GAAT 198 (478)
T ss_pred HHHHHHHhCCCeEccC--ccccCCCC---CCHH-HHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccC---CcCC
Confidence 3568899999987653 34677875 2232 232344555444 56789995 55666789998754 8888
Q ss_pred ChHhHHHHHHHHHH------HHHHhCCCcccEEeecCCcccccccccCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 046612 96 SPKIVKDFVDYGDF------CFKTYGDRVKLWASMNEPNGMVMNGYNGGSFAPGRCSNYVGNCTAGDSATEPYIAAHNML 169 (223)
Q Consensus 96 ~~~~~~~f~~y~~~------~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~~pg~~~~~~~~~~~~~~~~~~~~~~hn~l 169 (223)
|++ .+.|+-=+.. +..++|.. .++++|..-|....- .+..-...-|+.
T Consensus 199 spd-~dV~ayAaaqvk~ald~t~eLGge-----------nYVfWGGREGyetll--------------ntD~k~e~d~~a 252 (478)
T PLN02923 199 SSE-VGVYAYAAAQVKKAMEVTHYLGGE-----------NYVFWGGREGYQTLL--------------NTDMERELDHLA 252 (478)
T ss_pred CCC-HHHHHHHHHHHHHHHHHHHHhCCC-----------eEEecCCccchhhhc--------------ccCHHHHHHHHH
Confidence 865 3333333332 35567764 234444433321110 123445556666
Q ss_pred HHHHHHHHHHHHh
Q 046612 170 LSHGALVNLYKHK 182 (223)
Q Consensus 170 ~AHa~a~~~~k~~ 182 (223)
.+=..+++.-|++
T Consensus 253 ~fl~ma~dY~~~i 265 (478)
T PLN02923 253 RFLEAAVAYKKKI 265 (478)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666655543
No 210
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=41.97 E-value=1.5e+02 Score=27.20 Aligned_cols=86 Identities=21% Similarity=0.345 Sum_probs=54.2
Q ss_pred HHHHHHHHHc-CCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeE-EecCCCCCchhhhhhhCCCCC
Q 046612 19 KEDIKLMKKV-GLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPF-VTLLHFDPPQALEEEYGGFLS 96 (223)
Q Consensus 19 ~eDi~l~~~l-G~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~h~~~P~~l~~~~gg~~~ 96 (223)
-+|++.+..+ ++. .++++- .|.+ .. ..+.++.+.++++||++. ++...|..|.+ ++|...|
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH----~~~d---~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~ 105 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALH----IPWD---RV------EDYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTH 105 (378)
T ss_pred HHHHHHHHhhcCCC-Cceeec----cCCc---cc------cCHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCC
Confidence 4677777776 555 555552 2222 11 235778888999999987 77776766654 3467776
Q ss_pred h--HhHHHHHHHHHHH---HHHhCCC-cccE
Q 046612 97 P--KIVKDFVDYGDFC---FKTYGDR-VKLW 121 (223)
Q Consensus 97 ~--~~~~~f~~y~~~~---~~~~~~~-v~~w 121 (223)
+ ++.+...++.+.| ++.+|.. |..|
T Consensus 106 pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 106 PDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 4 4566667777655 4677774 4444
No 211
>PTZ00445 p36-lilke protein; Provisional
Probab=41.80 E-value=54 Score=27.74 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChH---------hHHHHHHHHHHHHH
Q 046612 58 KFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPK---------IVKDFVDYGDFCFK 112 (223)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~---------~~~~f~~y~~~~~~ 112 (223)
+.-+.+++.|++.||+.+++= ||.-.--. --|||.++. ..+.|..+.+.+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~DnTlI~~-HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDLTMITK-HSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chhhhhhh-hcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 445888999999999999853 23221111 128998886 44556666555443
No 212
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=41.79 E-value=58 Score=29.57 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=50.7
Q ss_pred hHHHHHHHHHcCCCE-------E-------EecccccccccCCCCCCCCC-hhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 18 YKEDIKLMKKVGLDS-------F-------RFSISWTRILPKGKISGGVN-PLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~-------~-------R~si~W~ri~P~~~~~g~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
..+-.+.+++++.+. + |.+..|.-+.-+|..+|.+| .+||...++++..+.+.|+...--+..-.
T Consensus 69 aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~GL~i~R~ll~~~~~~GlPvatE~ld~~ 148 (356)
T PRK12822 69 ALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKGLRLARQLLLSINTLGLATATEFLDTT 148 (356)
T ss_pred HHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEeecccc
Confidence 344455666666662 3 66777888865544467888 79999999999999999998776666555
Q ss_pred Cchhhhh
Q 046612 83 PPQALEE 89 (223)
Q Consensus 83 ~P~~l~~ 89 (223)
.|+.+.+
T Consensus 149 ~~qy~~D 155 (356)
T PRK12822 149 SFPYIAD 155 (356)
T ss_pred cHHHHHH
Confidence 5665543
No 213
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=41.65 E-value=93 Score=26.15 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCee
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKP 74 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p 74 (223)
.-+.-++++++||.+++.| +|.+ |.-.. +=|..+.+.|.++||..
T Consensus 136 ~vetAiaml~dmG~~SiKf-------fPm~---Gl~~l---eE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKF-------FPMG---GLKHL---EELKAVAKACARNGFTL 180 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE----------T---TTTTH---HHHHHHHHHHHHCT-EE
T ss_pred cHHHHHHHHHHcCCCeeeE-------eecC---CcccH---HHHHHHHHHHHHcCcee
Confidence 4567799999999999987 6876 54333 55788888999998643
No 214
>PRK10426 alpha-glucosidase; Provisional
Probab=41.60 E-value=2.6e+02 Score=27.39 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=61.4
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccccCCC--C---CCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC---CCchhh
Q 046612 18 YKEDIKLMKKVGLD--SFRFSISWTRILPKGK--I---SGGVNPLGVKFYKDLINELLANDIKPFVTLLHF---DPPQAL 87 (223)
Q Consensus 18 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~--~---~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l 87 (223)
..+-++.+++.|+. ++=+. .|........ . +=.+|.+-.---+++|+.|++.|+++++.+.=+ +.|..-
T Consensus 223 v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 33456777888854 44444 5764422110 0 002344322334889999999999988876532 223221
Q ss_pred h--hh-h------C---------------CCCChHhHHHHHHHHHHHHHHhCCCcccE-EeecCC
Q 046612 88 E--EE-Y------G---------------GFLSPKIVKDFVDYGDFCFKTYGDRVKLW-ASMNEP 127 (223)
Q Consensus 88 ~--~~-~------g---------------g~~~~~~~~~f~~y~~~~~~~~~~~v~~w-~t~NEp 127 (223)
+ ++ | | .+.||+..+.|.+..+......| |+.| .=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 1 10 0 1 16789999999877665554454 6664 788884
No 215
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=40.79 E-value=1.4e+02 Score=25.73 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=47.6
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCc
Q 046612 49 SGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 49 ~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
+|++|.++ ++++++.+.+.|+.-++.+-+- |-+ ..-+.+...+..+.+.+.-++++..+.-....+
T Consensus 13 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gst----------GE~-~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s 78 (285)
T TIGR00674 13 DGSVDFAA---LEKLIDFQIENGTDAIVVVGTT----------GES-PTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNA 78 (285)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccC----------ccc-ccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcc
Confidence 58999955 5999999999999999876431 111 112356667777778887788888777666554
Q ss_pred c
Q 046612 129 G 129 (223)
Q Consensus 129 ~ 129 (223)
.
T Consensus 79 ~ 79 (285)
T TIGR00674 79 T 79 (285)
T ss_pred H
Confidence 4
No 216
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=40.53 E-value=77 Score=27.23 Aligned_cols=49 Identities=12% Similarity=0.206 Sum_probs=33.5
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++.+=++-|=.|..=. +-| +...+=+..+.++||+|++++-
T Consensus 79 ~~mLkd~G~~~viiGHSERR~~f~-----Etd----~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQYFG-----ETD----ELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEeCcccccCccC-----cCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 578899999988888875554221 111 2234444459999999999984
No 217
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=40.44 E-value=89 Score=27.83 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCC---CCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGK---ISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~---~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg 93 (223)
..+|.++.||++|++.+= +.+.+-+-|+-. ..++... +-..+.|+.+++.||++-.++. +++|
T Consensus 139 ~~~e~l~~LkeAGl~~i~-~~~~E~~~~~v~~~i~~~~~~~---~~~~~~i~~a~~~Gi~v~s~~i-~G~~--------- 204 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSMP-GTAAEILDDEVRKVICPDKLST---AEWIEIIKTAHKLGIPTTATIM-YGHV--------- 204 (343)
T ss_pred CHHHHHHHHHHhCccccc-CcchhhcCHHHHHhcCCCCCCH---HHHHHHHHHHHHcCCcccceEE-EecC---------
Confidence 457889999999999884 222221111100 0122333 3447899999999998866653 2333
Q ss_pred CCChHhHHHHHHHHHHHHHHhCCCcccEEeec
Q 046612 94 FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMN 125 (223)
Q Consensus 94 ~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~N 125 (223)
.+.+.......+.+.+-..++. +.-.+++|
T Consensus 205 -Et~ed~~~~l~~lr~l~~~~~~-~~~~iP~~ 234 (343)
T TIGR03551 205 -ETPEHWVDHLLILREIQEETGG-FTEFVPLP 234 (343)
T ss_pred -CCHHHHHHHHHHHHHhhHHhCC-eeEEEecc
Confidence 2334455556666666555542 34455555
No 218
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=40.10 E-value=48 Score=27.87 Aligned_cols=61 Identities=18% Similarity=0.300 Sum_probs=45.0
Q ss_pred ccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 10 IASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 10 ~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
+|.|..+ .++.+++++++|....-+-+-+.-+.-. | .++|+.+++.|...+++++-.|+|.
T Consensus 7 lAlD~~~-~~~~l~~~~~~~~~~~~ikvg~~~f~~~----G----------~~~i~~l~~~~~~i~~D~Kl~Di~~ 67 (230)
T PRK00230 7 VALDFPS-KEEALAFLDQLDPAVLFVKVGMELFTAG----G----------PQFVRELKQRGFKVFLDLKLHDIPN 67 (230)
T ss_pred EEcCCCC-HHHHHHHHHhcCCcccEEEEcHHHHHhc----C----------HHHHHHHHhcCCCEEEEeehhhccc
Confidence 5667664 4789999999997765566655444421 1 4668888888999999999889985
No 219
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=39.99 E-value=1e+02 Score=26.07 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCC---CChHhHHHHHHHHHHHHHHhCCCccc
Q 046612 59 FYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGF---LSPKIVKDFVDYGDFCFKTYGDRVKL 120 (223)
Q Consensus 59 ~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~---~~~~~~~~f~~y~~~~~~~~~~~v~~ 120 (223)
..+++++.+.++|++-+.-.-|..+|..+.. ..| .+.+..+.|.+-++.+-++|+++++.
T Consensus 16 ~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I 78 (253)
T TIGR01856 16 TLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLKI 78 (253)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 3589999999999999998889765432211 112 12234555555566677889876644
No 220
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=39.95 E-value=1.4e+02 Score=25.55 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=47.4
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCc
Q 046612 49 SGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 49 ~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
+|.+|+++ +++.++.+.+.|+..++.+-+- |-. ..-+.+...+..+.+.+.-++++....-...++
T Consensus 15 dg~iD~~~---~~~~i~~l~~~Gv~gl~v~Gst----------GE~-~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 15 DGSVDFDA---LERLIEFQIENGTDGLVVCGTT----------GES-PTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC----------cch-hhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc
Confidence 58999966 5999999999999999877431 111 123466777777777888778887777666554
Q ss_pred c
Q 046612 129 G 129 (223)
Q Consensus 129 ~ 129 (223)
.
T Consensus 81 ~ 81 (284)
T cd00950 81 T 81 (284)
T ss_pred H
Confidence 3
No 221
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=39.89 E-value=1.4e+02 Score=28.54 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=21.7
Q ss_pred ccChHH-----HHHHHHHcCCCEEEeccccccc
Q 046612 15 YHHYKE-----DIKLMKKVGLDSFRFSISWTRI 42 (223)
Q Consensus 15 y~~~~e-----Di~l~~~lG~~~~R~si~W~ri 42 (223)
|..|++ |++...+.|++.+|+....+.+
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv 123 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP 123 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH
Confidence 555654 6899999999999998765544
No 222
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=39.89 E-value=52 Score=27.99 Aligned_cols=55 Identities=9% Similarity=0.113 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhH----HHHHHHHHHHHHhCCCeeEEec
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLG----VKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~----l~~y~~~i~~l~~~gi~p~vtL 78 (223)
+.++-+++++++|.+.+++.- + -.+. +.-+.+. ++..+.+.+.++++||...+=.
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~-~--~~~~----~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAG-Y--DVYY----EQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECC-c--cccc----cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 356678999999999999741 1 1111 1112333 5566888888899999777644
No 223
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=39.66 E-value=2.2e+02 Score=24.86 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=60.2
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCCh
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSP 97 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~ 97 (223)
.++-++.+++.|+ .++.+|+=+---|.. |..+. +++.++++.+.+.|..-+ .|- +. .|..+|
T Consensus 122 ~~~~v~~ak~~g~-~v~~~i~~~~~~~~~---~~~~~---~~~~~~~~~~~~~G~d~i-~l~---------DT-~G~~~P 183 (287)
T PRK05692 122 FEPVAEAAKQAGV-RVRGYVSCVLGCPYE---GEVPP---EAVADVAERLFALGCYEI-SLG---------DT-IGVGTP 183 (287)
T ss_pred HHHHHHHHHHcCC-EEEEEEEEEecCCCC---CCCCH---HHHHHHHHHHHHcCCcEE-Eec---------cc-cCccCH
Confidence 4556788899997 477777655444554 67776 788999999999998743 442 22 566655
Q ss_pred HhHHHHHHHHHHHHHHhCCCcccEEeecCCcc
Q 046612 98 KIVKDFVDYGDFCFKTYGDRVKLWASMNEPNG 129 (223)
Q Consensus 98 ~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~ 129 (223)
. ...+.++.+.+++++.--....-|-..+
T Consensus 184 ~---~v~~lv~~l~~~~~~~~i~~H~Hn~~Gl 212 (287)
T PRK05692 184 G---QVRAVLEAVLAEFPAERLAGHFHDTYGQ 212 (287)
T ss_pred H---HHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 4 5566777777788752223455565554
No 224
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=38.37 E-value=27 Score=29.54 Aligned_cols=17 Identities=24% Similarity=0.089 Sum_probs=14.7
Q ss_pred CCCcccEEeecCCcccc
Q 046612 115 GDRVKLWASMNEPNGMV 131 (223)
Q Consensus 115 ~~~v~~w~t~NEp~~~~ 131 (223)
...++++.+||||+...
T Consensus 63 ~~~~~~ll~fNEPD~~~ 79 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG 79 (239)
T ss_pred ccCccceeeecCCCCCC
Confidence 77899999999999743
No 225
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=38.34 E-value=1.9e+02 Score=26.44 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=58.0
Q ss_pred hHHHHHHHHHcCCCEEEecc-cc-cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCC
Q 046612 18 YKEDIKLMKKVGLDSFRFSI-SW-TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 95 (223)
-++.++.|+++|+|.+-+++ |- +.++..- |+... .+-..+.++.+++.++.+-++|. +++|.
T Consensus 110 ~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l---gR~h~--~~~~~~ai~~~~~~~~~v~~DlI-~GlPg---------- 173 (390)
T PRK06582 110 ETEKFKAFKLAGINRVSIGVQSLKEDDLKKL---GRTHD--CMQAIKTIEAANTIFPRVSFDLI-YARSG---------- 173 (390)
T ss_pred CHHHHHHHHHCCCCEEEEECCcCCHHHHHHc---CCCCC--HHHHHHHHHHHHHhCCcEEEEee-cCCCC----------
Confidence 47899999999999777776 33 2333322 33221 23446667788888888999887 67772
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcccEEeecCCccc
Q 046612 96 SPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM 130 (223)
Q Consensus 96 ~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~ 130 (223)
++.+.+.+=.+.+.+-=-+.|..+...=||+..
T Consensus 174 --qt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~ 206 (390)
T PRK06582 174 --QTLKDWQEELKQAMQLATSHISLYQLTIEKGTP 206 (390)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEecCEEccCCh
Confidence 123344444444444323457777766666544
No 226
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=38.12 E-value=51 Score=32.32 Aligned_cols=58 Identities=22% Similarity=0.440 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEe--------cccccccccCC----C-CCCCCChhHHHHHHHHHHHHHhCCCeeEEecC--CCC
Q 046612 19 KEDIKLMKKVGLDSFRF--------SISWTRILPKG----K-ISGGVNPLGVKFYKDLINELLANDIKPFVTLL--HFD 82 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~--------si~W~ri~P~~----~-~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--h~~ 82 (223)
.+=+..+++||++++=+ .-||- -+|.+ + .-| .+++ ++++||+|.++||-+||+.. ||.
T Consensus 168 ~~llpYl~elG~T~IELMPv~e~p~~~sWG-Yq~~g~yAp~sryG--tPed---fk~fVD~aH~~GIgViLD~V~~HF~ 240 (628)
T COG0296 168 IELLPYLKELGITHIELMPVAEHPGDRSWG-YQGTGYYAPTSRYG--TPED---FKALVDAAHQAGIGVILDWVPNHFP 240 (628)
T ss_pred HHHhHHHHHhCCCEEEEcccccCCCCCCCC-CCcceeccccccCC--CHHH---HHHHHHHHHHcCCEEEEEecCCcCC
Confidence 34467789999999874 22331 11111 0 002 3434 59999999999999999854 554
No 227
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=38.04 E-value=50 Score=25.39 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=38.7
Q ss_pred hHHHHHHHHHcCCCEEEeccccc-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWT-RILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~-ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
-+++++.|+++|+..+.+|++-. .-.-... . -....++.+-+.|+.+.+.|+.+.+++
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKI--R-GSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHH--h-cCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 48899999999999999999532 2211100 0 011223567788888888888877766
No 228
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=37.87 E-value=1.1e+02 Score=26.32 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHH
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINEL 67 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l 67 (223)
...+|++.++++|++-+=|++. ++ +|.+|.+.+ .++++.+
T Consensus 74 ~M~~di~~~~~~GadGvV~G~L------~~--dg~vD~~~~---~~Li~~a 113 (248)
T PRK11572 74 AMLEDIATVRELGFPGLVTGVL------DV--DGHVDMPRM---RKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeeE------CC--CCCcCHHHH---HHHHHHh
Confidence 4678999999999999999875 22 388999554 6666666
No 229
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=37.87 E-value=84 Score=29.15 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHhC---CCeeEEecCCCCCchhhhhhh----CCC----CChHhHHHHHHHHHHHHHHhCCC-cccEE
Q 046612 55 LGVKFYKDLINELLAN---DIKPFVTLLHFDPPQALEEEY----GGF----LSPKIVKDFVDYGDFCFKTYGDR-VKLWA 122 (223)
Q Consensus 55 ~~l~~y~~~i~~l~~~---gi~p~vtL~h~~~P~~l~~~~----gg~----~~~~~~~~f~~y~~~~~~~~~~~-v~~w~ 122 (223)
|.+++=--+|..+.+. +++.+.+- |..|.|+.... +|- .+...-..|++|--+.++.|+.. +.+|-
T Consensus 174 ED~q~KIP~ik~A~~~~~~~lklfAsP--WsaPgWlKttg~m~G~G~l~g~~~d~yhqtya~YfvkFleaY~~~gi~FWg 251 (518)
T KOG2566|consen 174 EDLKLKIPFIKKAQKYNQGNLKLFASP--WSAPGWLKTTGRMNGKGALLGDPGDIYHQTYARYFVKFLEAYAKHGIQFWG 251 (518)
T ss_pred hhheeecHHHHHHHHhcCCCceEEecC--CCCCceeeecccccccccccCCCCchhHHHHHHHHHHHHHHHHhcCceEEe
Confidence 3344444455555543 46655544 88999985420 121 12244567777777778888765 99997
Q ss_pred --eecCCcccccccc
Q 046612 123 --SMNEPNGMVMNGY 135 (223)
Q Consensus 123 --t~NEp~~~~~~~y 135 (223)
+=|||...+..++
T Consensus 252 lt~qNEPstG~d~~~ 266 (518)
T KOG2566|consen 252 LTTQNEPSTGSDKKW 266 (518)
T ss_pred ecccCCCCcCcccCC
Confidence 8899997765554
No 230
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=37.83 E-value=14 Score=31.85 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCCC
Q 046612 66 ELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGSF 140 (223)
Q Consensus 66 ~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~~ 140 (223)
-+.++.+.|+++||||+.= ..-+.+....+.++.+.+=++.--.++-.+---|---....+.+.+||..-.+
T Consensus 76 ~~~a~~~~pl~SlHH~~~~---~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy 147 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSV---DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVY 147 (255)
T ss_pred eeecCCCCceeeeeehhhc---cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEE
Confidence 3555678999999999862 22245555566777777755543333322211111122223456678865444
No 231
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=37.83 E-value=59 Score=28.10 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=42.8
Q ss_pred cChHHHHHHHHHcCCCEEEeccc--ccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe-eEEecC-CCCCch
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSIS--WTRILPKGKISGGVNPLGVKFYKDLINELLANDIK-PFVTLL-HFDPPQ 85 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~--W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~-h~~~P~ 85 (223)
-.|+|-+.+.|++||+.+-+||+ =.|+ .++||.. +---.+++.+.+.|+. |-++|. |--.|.
T Consensus 18 ~sW~erl~~AK~~GFDFvEmSvDEsDeRL-------aRLDWs~-~er~~l~~ai~etgv~ipSmClSaHRRfPf 83 (287)
T COG3623 18 FSWLERLALAKELGFDFVEMSVDESDERL-------ARLDWSK-EERLALVNAIQETGVRIPSMCLSAHRRFPF 83 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEEeccchHHHH-------HhcCCCH-HHHHHHHHHHHHhCCCccchhhhhhccCCC
Confidence 36899999999999999999994 3333 2334433 2236788899999987 445554 544453
No 232
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=37.41 E-value=70 Score=29.02 Aligned_cols=56 Identities=14% Similarity=0.369 Sum_probs=41.5
Q ss_pred EecccccccccCCCCCCCCC-hhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhh
Q 046612 34 RFSISWTRILPKGKISGGVN-PLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEE 89 (223)
Q Consensus 34 R~si~W~ri~P~~~~~g~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~ 89 (223)
|.+.+|.-+.-+|..+|.++ .+||...++++-.+.+.|+...--+.--..|+.+.+
T Consensus 99 RTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~~~~e~GlpvatE~ld~~~~~y~~d 155 (349)
T PRK09261 99 RTTVGWKGLINDPDLDGSFDINDGLRIARKLLLDINELGLPAATEFLDPITPQYIAD 155 (349)
T ss_pred CCCCCCcCCCcCcCccccccHHHHHHHHHHHHHHHHHhCCCeEEEecccccHHHHHh
Confidence 45667888864444468888 899999999988899999987766655555665543
No 233
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=37.24 E-value=2.5e+02 Score=24.95 Aligned_cols=105 Identities=19% Similarity=0.153 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCC--CEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC-----CCchhhhhh-
Q 046612 19 KEDIKLMKKVGL--DSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHF-----DPPQALEEE- 90 (223)
Q Consensus 19 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~-----~~P~~l~~~- 90 (223)
.+-++.+++.|+ +++=+.+.|..-... =.+|.+..---.++++.|+++|+++++.++-+ +.|..-+..
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~~~----f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~ 102 (339)
T cd06604 27 REIADEFRERDIPCDAIYLDIDYMDGYRV----FTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLE 102 (339)
T ss_pred HHHHHHHHHhCCCcceEEECchhhCCCCc----eeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHH
Confidence 455666777775 556666667542110 12333222223799999999999998755422 112221100
Q ss_pred ------------h-----------CCCCChHhHHHHHHHHHHHHHHhCCCcc-cEEeecCCccc
Q 046612 91 ------------Y-----------GGFLSPKIVKDFVDYGDFCFKTYGDRVK-LWASMNEPNGM 130 (223)
Q Consensus 91 ------------~-----------gg~~~~~~~~~f~~y~~~~~~~~~~~v~-~w~t~NEp~~~ 130 (223)
+ -.|.||+..+.|.+.-+.+. ...|+ +|+=+|||..+
T Consensus 103 ~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 103 NDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred CCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh---hCCCceEeecCCCcccc
Confidence 0 13678888888877666554 22344 57889999865
No 234
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=36.33 E-value=41 Score=29.46 Aligned_cols=32 Identities=13% Similarity=-0.016 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 54 PLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 54 ~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
.+|++-+.++|+.+++.|+.+++++-..|.|.
T Consensus 69 ~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~n 100 (278)
T PRK00125 69 AEGLAQLERTIAYLREAGVLVIADAKRGDIGS 100 (278)
T ss_pred chhhhHHHHHHHHHHHCCCcEEEEeecCChHH
Confidence 46778889999999999999999999999984
No 235
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=36.08 E-value=36 Score=18.51 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCCee
Q 046612 60 YKDLINELLANDIKP 74 (223)
Q Consensus 60 y~~~i~~l~~~gi~p 74 (223)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 477888888899987
No 236
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=35.75 E-value=2e+02 Score=25.72 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=60.2
Q ss_pred cChHHHHHHHHHcCCCEEEecc--ccccccc-CC----CCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC------
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSI--SWTRILP-KG----KISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD------ 82 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si--~W~ri~P-~~----~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~------ 82 (223)
.+.++=++++++.|+|++=+.+ ++-.|-= .. ...|.. ...+.-...+++.|+++||.||.-+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 4678889999999999999887 4544422 11 000111 11123458999999999999998665432
Q ss_pred -CchhhhhhhC----------CCCCh---HhHHHHHHHHHHHHHH
Q 046612 83 -PPQALEEEYG----------GFLSP---KIVKDFVDYGDFCFKT 113 (223)
Q Consensus 83 -~P~~l~~~~g----------g~~~~---~~~~~f~~y~~~~~~~ 113 (223)
.|.|...+-+ .|.|| ++.+.-.+-|+.+++.
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 2544331112 27664 5666667777776643
No 237
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=35.70 E-value=1.4e+02 Score=29.73 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHHHH----HHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHH
Q 046612 56 GVKFYK----DLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFC 110 (223)
Q Consensus 56 ~l~~y~----~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~ 110 (223)
++++.. .+++.|+++|+..=+..+|-.++.-+..+||. +-...++--.+|++.|
T Consensus 204 Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~ 261 (733)
T PLN02925 204 ELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARIC 261 (733)
T ss_pred hHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 454444 49999999999999999999999888888865 2223444444444433
No 238
>PLN02429 triosephosphate isomerase
Probab=35.68 E-value=1e+02 Score=27.60 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=34.0
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++.+=++-|=.|..-. +-| +...+=+..+.++||.|++++-
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f~-----Etd----~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVIG-----EKD----EFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCCC-----cCH----HHHHHHHHHHHHCcCEEEEEcC
Confidence 578899999988888875554322 222 2334444559999999999984
No 239
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=35.42 E-value=1.1e+02 Score=27.78 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCC-CChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 17 HYKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGG-VNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~-~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
--.+.++.|+++|+|.+-+++ |-+ ++...- |+ .+. +-..+.++.+++.++.+.++|. +++|.
T Consensus 102 i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l---~R~~~~---~~~~~ai~~~~~~~~~v~~dli-~GlPg 166 (380)
T PRK09057 102 VEAGRFRGYRAAGVNRVSLGVQALNDADLRFL---GRLHSV---AEALAAIDLAREIFPRVSFDLI-YARPG 166 (380)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHhCccEEEEee-cCCCC
Confidence 345999999999999777776 332 333222 22 233 3346678888888888888886 67773
No 240
>PLN02891 IMP cyclohydrolase
Probab=35.25 E-value=57 Score=31.30 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=42.3
Q ss_pred CCcccCCcccCh--HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 7 TGDIASGFYHHY--KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 7 ~~~~a~d~y~~~--~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
..-.|+|-+--+ ++-++.+++.|++++ |+|- |.+.. +++|+.+.++||.-+.|
T Consensus 486 G~vlASDAFFPF~~~D~ve~aa~~Gv~aI--------IQPG----GSiRD------~evI~aane~giaMvfT 540 (547)
T PLN02891 486 GAALASDAFFPFAWNDAVEEACQAGVKVI--------AEPG----GSMRD------QDAIDCCNKYGVALLFT 540 (547)
T ss_pred CeEEEecccCCCCCCccHHHHHHhCCEEE--------ECCC----CCCCc------HHHHHHHHHhCCEEEEC
Confidence 345677855544 599999999999987 7886 56666 78999999999998876
No 241
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=35.11 E-value=2.1e+02 Score=22.94 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=42.8
Q ss_pred CCcccChHHHHH----HHHHcCCCEEEeccc---ccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 12 SGFYHHYKEDIK----LMKKVGLDSFRFSIS---WTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 12 ~d~y~~~~eDi~----l~~~lG~~~~R~si~---W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
.|+..+..+|++ +.+++|++.+.+.+. .+.+.-.. ........-..|..+.+.+.+.|+..++|=+|.+
T Consensus 31 vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 31 ATSPLFPRRELEEAKRLAKEIGIRHEVIETDELDDPEFAKNP--PDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccccHHHhcCC--CCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 444444455543 337899999988876 22221111 0122223335688888889999999999988754
No 242
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=35.06 E-value=3.2e+02 Score=24.17 Aligned_cols=40 Identities=13% Similarity=-0.008 Sum_probs=33.6
Q ss_pred ccccc---CCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC
Q 046612 40 TRILP---KGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHF 81 (223)
Q Consensus 40 ~ri~P---~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 81 (223)
.+..| .. -+-++.+-+..++++.+.+.++|-+.++=|+|-
T Consensus 63 ~~~~~~~~~~--~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~ 105 (338)
T cd04733 63 HLEEPGIIGN--VVLESGEDLEAFREWAAAAKANGALIWAQLNHP 105 (338)
T ss_pred cccCCCcCCC--cccCCHHHHHHHHHHHHHHHhcCCEEEEEccCC
Confidence 45666 32 267899999999999999999999999999993
No 243
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=34.90 E-value=1.1e+02 Score=28.25 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=65.6
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC-CCCCCChhHHHHHHHHHHHHHhCCCee-EEecCCCCCchhhhhhhCCCC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGK-ISGGVNPLGVKFYKDLINELLANDIKP-FVTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~-~~g~~n~~~l~~y~~~i~~l~~~gi~p-~vtL~h~~~P~~l~~~~gg~~ 95 (223)
-.+=++.++++|+| |+|+-=..+-++-- .-|..... +--.+.++.+++.|+.- -++|. |++|.
T Consensus 136 ~~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lgR~h~~--~~~~~a~~~~~~~g~~~in~DLI-yglP~---------- 200 (416)
T COG0635 136 EAEKFKALKEAGVN--RISLGVQSFNDEVLKALGRIHDE--EEAKEAVELARKAGFTSINIDLI-YGLPG---------- 200 (416)
T ss_pred CHHHHHHHHHcCCC--EEEeccccCCHHHHHHhcCCCCH--HHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 45668999999999 77774333322210 00333221 23477888899999884 45665 56662
Q ss_pred ChHhHHHHHHHHHHHHHHhCCCcccEEeecCCcccccccccCCC
Q 046612 96 SPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGMVMNGYNGGS 139 (223)
Q Consensus 96 ~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~~~~~y~~g~ 139 (223)
++.+.|.+=.+.+++-=-++|..+-..-||+.....-...|.
T Consensus 201 --QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~ 242 (416)
T COG0635 201 --QTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGK 242 (416)
T ss_pred --CCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCC
Confidence 234555555555555556789999999999877665555554
No 244
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=34.53 E-value=1.3e+02 Score=26.43 Aligned_cols=72 Identities=8% Similarity=0.069 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCe--eEEe---------------cCCCCCchhhhhhhCCCCCh-H-hHHHHHHHHHHHHHHhCC--
Q 046612 58 KFYKDLINELLANDIK--PFVT---------------LLHFDPPQALEEEYGGFLSP-K-IVKDFVDYGDFCFKTYGD-- 116 (223)
Q Consensus 58 ~~y~~~i~~l~~~gi~--p~vt---------------L~h~~~P~~l~~~~gg~~~~-~-~~~~f~~y~~~~~~~~~~-- 116 (223)
+.|.++++.+++.||+ +++. +..-++|.|+.+++...... + ..+.=.+||....+.+-+
T Consensus 189 ~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~g 268 (296)
T PRK09432 189 ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREG 268 (296)
T ss_pred HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5678899999999965 2222 34577899988776665432 2 122234455444444322
Q ss_pred --CcccEEeecCCccc
Q 046612 117 --RVKLWASMNEPNGM 130 (223)
Q Consensus 117 --~v~~w~t~NEp~~~ 130 (223)
.|.++ |+|-+...
T Consensus 269 v~GvH~y-t~n~~~~~ 283 (296)
T PRK09432 269 VKDFHFY-TLNRAELT 283 (296)
T ss_pred CCEEEEe-cCCChHHH
Confidence 35544 68877654
No 245
>PRK15108 biotin synthase; Provisional
Probab=34.51 E-value=1.3e+02 Score=26.93 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=34.2
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 23 KLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 23 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
+.++++|++.+=++.+|. .|.. ..+++|.++++.+++.|+++.+++-
T Consensus 86 ~~~~~~G~~~i~i~~~g~--~p~~--------~~~e~i~~~i~~ik~~~i~v~~s~G 132 (345)
T PRK15108 86 RKAKAAGSTRFCMGAAWK--NPHE--------RDMPYLEQMVQGVKAMGLETCMTLG 132 (345)
T ss_pred HHHHHcCCCEEEEEecCC--CCCc--------chHHHHHHHHHHHHhCCCEEEEeCC
Confidence 445679999886666773 3321 3458899999999999999877754
No 246
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=33.82 E-value=54 Score=29.53 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCCEEEeccccc
Q 046612 19 KEDIKLMKKVGLDSFRFSISWT 40 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ 40 (223)
.+-++.|-+.|++.+|+.+++.
T Consensus 17 ~e~l~~li~aGm~v~RiN~SHg 38 (348)
T PF00224_consen 17 VEVLRKLIEAGMNVARINFSHG 38 (348)
T ss_dssp HHHHHHHHHHTEEEEEEETTSS
T ss_pred HHHHHHHHHhccEEEEEeeecC
Confidence 6788999999999999999983
No 247
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=33.26 E-value=56 Score=21.65 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=23.3
Q ss_pred HHHHHHHH-hCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHH
Q 046612 61 KDLINELL-ANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDY 106 (223)
Q Consensus 61 ~~~i~~l~-~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y 106 (223)
+++++.|. ..||+|.+|. ..|-.- ..++.+.|..|
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~L------ekeN~eFF~aY 54 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYLL------EKENADFFRCY 54 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHHH------HHHHHHHHHHH
Confidence 56777665 4899999877 356432 24566777766
No 248
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=33.22 E-value=1.4e+02 Score=25.20 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=67.1
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC---CCCC--chhhhhh--hCC
Q 046612 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL---HFDP--PQALEEE--YGG 93 (223)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---h~~~--P~~l~~~--~gg 93 (223)
|.=++|.+-=|-+++.++-+.++-.. |.--...|++|++++...++++.-.++|-. ||++ |.-+..- .=|
T Consensus 119 dHVLAKlAa~n~VAIe~~L~plL~~~---G~~Rar~L~~~r~~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iG 195 (216)
T PRK03892 119 DHVLARMAAKRGVAIGFSLSPLLRAN---PYERANILRFMMKAWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIG 195 (216)
T ss_pred cHHHHHHHHHcCeEEEEecHHHHhhC---chhHHHHHHHHHHHHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhC
Confidence 44566666777789999999998875 778889999999999999999999999854 5554 4433321 135
Q ss_pred CCChHhHHHHHHHHHHHHHH
Q 046612 94 FLSPKIVKDFVDYGDFCFKT 113 (223)
Q Consensus 94 ~~~~~~~~~f~~y~~~~~~~ 113 (223)
...++..+.+..|.+.+.+|
T Consensus 196 me~~ea~~~Ls~~p~~i~~~ 215 (216)
T PRK03892 196 MEIPQAKASLSFYPRIILKR 215 (216)
T ss_pred CCHHHHHHHHHHhHHHHhhc
Confidence 66677777888887777665
No 249
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=33.17 E-value=88 Score=29.48 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCEEEecccc
Q 046612 19 KEDIKLMKKVGLDSFRFSISW 39 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W 39 (223)
+|.+..|-+.|++.+|+.+++
T Consensus 16 ~e~l~~l~~~G~~~~R~N~sh 36 (473)
T TIGR01064 16 PEMLKKLLDAGMNVARLNFSH 36 (473)
T ss_pred HHHHHHHHHcCCCEEEEECCC
Confidence 578999999999999999988
No 250
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=33.15 E-value=2.7e+02 Score=25.48 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=63.2
Q ss_pred hHHHHHHHHHcCCC--EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC---CCc---hh---
Q 046612 18 YKEDIKLMKKVGLD--SFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHF---DPP---QA--- 86 (223)
Q Consensus 18 ~~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~---~~P---~~--- 86 (223)
..+-++.+++.|+- ++=++..|..-... -.+|.+...-.+++++.|+++|+++++.++-+ +.+ ..
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~----f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~ 120 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYGD----FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEA 120 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTBT----T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHH
T ss_pred HHHHHHHHHHcCCCccceeccccccccccc----cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhH
Confidence 34556777777765 44455556553221 24555444456999999999999988876521 222 11
Q ss_pred -----hhhhhCC----------------CCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCccc
Q 046612 87 -----LEEEYGG----------------FLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPNGM 130 (223)
Q Consensus 87 -----l~~~~gg----------------~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~~~ 130 (223)
+.+.-.| +.+++..+.|.+..+.+++.+| ---+|.=+|||..+
T Consensus 121 ~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 121 KEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 1000011 6788888888887777666654 23457889999865
No 251
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=33.03 E-value=51 Score=26.31 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=32.4
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 23 KLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 23 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
++++.+|+..+=..+.|... +.. +.-....-.+|..+.+.+++.|...+++=||
T Consensus 52 ~~~~~~~i~~~~~~~~~~~~-~~~---~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh 105 (182)
T PF01171_consen 52 EICEQLGIPLYIVRIDEDRK-KGS---NIEECARELRYQFLREIAKEEGCNKIALGHH 105 (182)
T ss_dssp HHHHHTT-EEEEEE--CHCC-TTS---TCHHHHHHHHHHHHHHHHHTTT-CEEE---B
T ss_pred HHHHhcCCceEEEEeeeeec-ccC---CHHHHHHHHHHHHHHHhhhcccccceeecCc
Confidence 56689999999999998211 111 2212333457888889999999999999988
No 252
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=32.77 E-value=1.4e+02 Score=29.57 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHHHHHcCCCEEEecccccc-------cccCCCCCCCCCh---------hHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTR-------ILPKGKISGGVNP---------LGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~r-------i~P~~~~~g~~n~---------~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-+.++++|++.+=++-.-.. .-|.. +|.+|- -.++-++++++.+.++||+++++|.
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~--D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSI--DGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCC--CCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999987742211 11332 233331 2256789999999999999999874
No 253
>PRK06739 pyruvate kinase; Validated
Probab=32.75 E-value=1.1e+02 Score=27.87 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCCEEEecccc
Q 046612 19 KEDIKLMKKVGLDSFRFSISW 39 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W 39 (223)
++-+..|-+.|++.+|+.+|+
T Consensus 16 ~e~l~~Li~aGm~v~RlNfSH 36 (352)
T PRK06739 16 KETLAQLINNGMKIVRLNLSH 36 (352)
T ss_pred HHHHHHHHHCCCCEEEEECCC
Confidence 578999999999999999998
No 254
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=32.53 E-value=38 Score=22.18 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=22.9
Q ss_pred HHHHHHHH-hCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHH
Q 046612 61 KDLINELL-ANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDY 106 (223)
Q Consensus 61 ~~~i~~l~-~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y 106 (223)
+++++.|. ..||+|.+|.. .|-.- ..++.+.|..|
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~L------e~eN~eFF~aY 51 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQKL------EKENPEFFKAY 51 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHHH------HHHCHHHHHHh
Confidence 67888884 66999998874 55332 23445566655
No 255
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=32.12 E-value=2.5e+02 Score=23.88 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=47.0
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCc
Q 046612 49 SGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 49 ~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
+|.+|+++ +++.++.+.+.|+.-++.+-+- |-+. .-+.+...+.++.+.+.-++++....-...++
T Consensus 12 dg~iD~~~---~~~~i~~l~~~Gv~gi~~~Gst----------GE~~-~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 77 (281)
T cd00408 12 DGEVDLDA---LRRLVEFLIEAGVDGLVVLGTT----------GEAP-TLTDEERKEVIEAVVEAVAGRVPVIAGVGANS 77 (281)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCC----------cccc-cCCHHHHHHHHHHHHHHhCCCCeEEEecCCcc
Confidence 58999955 5999999999999998866431 1111 12356667777777777777888777666655
Q ss_pred c
Q 046612 129 G 129 (223)
Q Consensus 129 ~ 129 (223)
.
T Consensus 78 ~ 78 (281)
T cd00408 78 T 78 (281)
T ss_pred H
Confidence 4
No 256
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=32.08 E-value=1.1e+02 Score=26.40 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=45.4
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCC
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 95 (223)
.++++-++.++++||+++=+|- |.++... +-..++|+.++++|++|+-=+-- --| .. .
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSd------------Gti~l~~-~~r~~~I~~~~~~Gf~v~~EvG~-K~~---~~-----~ 141 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISD------------GTIDLPE-EERLRLIRKAKEEGFKVLSEVGK-KDP---ES-----D 141 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--------------SSS---H-HHHHHHHHHHCCTTSEEEEEES--SSH---HH-----H
T ss_pred ChHHHHHHHHHHcCCCEEEecC------------CceeCCH-HHHHHHHHHHHHCCCEEeecccC-CCc---hh-----c
Confidence 3578889999999999988872 3333211 44578899999999999865430 000 00 0
Q ss_pred ChHhHHHHHHHHHHHHHH
Q 046612 96 SPKIVKDFVDYGDFCFKT 113 (223)
Q Consensus 96 ~~~~~~~f~~y~~~~~~~ 113 (223)
...+++.+.+.++...+.
T Consensus 142 ~~~~~~~~i~~~~~dLeA 159 (244)
T PF02679_consen 142 FSLDPEELIEQAKRDLEA 159 (244)
T ss_dssp TT--CCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHC
Confidence 112356777777777766
No 257
>PRK14565 triosephosphate isomerase; Provisional
Probab=31.80 E-value=1.4e+02 Score=25.58 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=32.0
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++..=++-|=.|..=. +-| +...+=+..+.++||+|++++-
T Consensus 78 ~~mLkd~G~~~viiGHSERR~~f~-----Etd----~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRSTFH-----ETD----SDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEECcccccCcCC-----cCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 467788888777777764443221 111 1234445889999999999984
No 258
>PRK12465 xylose isomerase; Provisional
Probab=31.56 E-value=4.4e+02 Score=24.71 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHH----HHhCCCee-EEecCCCCCchhhhhhhCCC
Q 046612 20 EDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINE----LLANDIKP-FVTLLHFDPPQALEEEYGGF 94 (223)
Q Consensus 20 eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~----l~~~gi~p-~vtL~h~~~P~~l~~~~gg~ 94 (223)
.-++.|.+||+..|=|- =..|.|++ .... +..+..+++++. +.+.||++ ++|..=|+.|.... |+.
T Consensus 93 aaFEf~~kLG~~~~~FH--D~D~~Peg---~s~~-E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs~prf~~---GA~ 163 (445)
T PRK12465 93 AAFEFFTKLGVPYYCFH--DIDLAPDA---DDIG-EYESNLKHMVGIAKQRQADTGIKLLWGTANLFSHPRYMN---GAS 163 (445)
T ss_pred HHHHHHHHhCCCeeecc--ccccCCCC---CCHH-HHHHHHHHHHHHHHHHhhhhCceeeeeccccccCccccC---CcC
Confidence 34788999999987654 34577775 2232 222334555444 56789995 55666688887643 888
Q ss_pred CChH
Q 046612 95 LSPK 98 (223)
Q Consensus 95 ~~~~ 98 (223)
+||+
T Consensus 164 TnPD 167 (445)
T PRK12465 164 TNPD 167 (445)
T ss_pred CCCC
Confidence 8875
No 259
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=31.48 E-value=67 Score=25.95 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=44.2
Q ss_pred ccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 10 IASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 10 ~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
++.|.+..-..+++.+..+.++.++++.++.+- -. +.......+.+++.+++.|++++++=
T Consensus 150 i~ld~~g~~~~~~~~l~~l~~~~ikld~~~~~~-------~~-~~~~~~~l~~l~~~~~~~~~~via~g 210 (236)
T PF00563_consen 150 IALDDFGSGSSSLEYLASLPPDYIKLDGSLVRD-------LS-DEEAQSLLQSLINLAKSLGIKVIAEG 210 (236)
T ss_dssp EEEEEETSTCGCHHHHHHHCGSEEEEEHHGHTT-------TT-SHHHHHHHHHHHHHHHHTT-EEEEEC
T ss_pred eEeeeccCCcchhhhhhhcccccceeecccccc-------cc-hhhHHHHHHHHHHHhhccccccceee
Confidence 344445444567888899999999999887632 22 45666788999999999999999853
No 260
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=31.43 E-value=2.6e+02 Score=22.71 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCC---CCCCCCh---hHHHH---HHHHHHHHHhCCCeeEEecCC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGK---ISGGVNP---LGVKF---YKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~---~~g~~n~---~~l~~---y~~~i~~l~~~gi~p~vtL~h 80 (223)
.|+|.++.++++|++...+|-.=....|+-+ ..|-.+. +.|.. ..+.|.+..++|. |++.+++
T Consensus 12 ~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~-pilgICg 83 (198)
T cd03130 12 YYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGG-PIYAECG 83 (198)
T ss_pred ccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCC-CEEEEcc
Confidence 4899999999999999887752011112110 0122222 33322 3455666667774 7887774
No 261
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=31.20 E-value=2.6e+02 Score=26.20 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=37.9
Q ss_pred CcccChHHHH-----HHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 13 GFYHHYKEDI-----KLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 13 d~y~~~~eDi-----~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-.|.+|.+|+ ++..+-|+++||+ |..- |. +.-...-|+..++.|-....++.
T Consensus 90 vGYrhyaDDvVe~Fv~ka~~nGidvfRi-------FDAl------ND--~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 90 VGYRHYADDVVEKFVEKAAENGIDVFRI-------FDAL------ND--VRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred ccccCCchHHHHHHHHHHHhcCCcEEEe-------chhc------cc--hhHHHHHHHHHHhcCceeEEEEE
Confidence 3688888884 7778999999985 3322 21 13457788888999998888876
No 262
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.12 E-value=2.2e+02 Score=24.40 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=37.5
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
..+-++.++++|.+++-+-+..+|.-..+ .++...+ ..+-+.+.++++.......|
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~----~~~~~~~---~~~~~~~~~~~~~~~~i~~H 68 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP----MLEEEVI---DWFKAALETNKNLSQIVLVH 68 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC----CCCHHHH---HHHHHHHHHcCCCCcceecc
Confidence 46678999999999999988887765442 3445333 44445578888864323334
No 263
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=31.11 E-value=1.7e+02 Score=24.96 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=37.3
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++.+=++-|=.|-.= |+-| +...+-+..+.++||+|++++-
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f-----~Et~----~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYF-----GETD----EDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCcC-----CCCc----HHHHHHHHHHHHCCCEEEEEeC
Confidence 57899999999988887555432 1111 4568888899999999999984
No 264
>PLN02808 alpha-galactosidase
Probab=31.04 E-value=1.3e+02 Score=27.64 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=44.9
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP 83 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~ 83 (223)
+..++.|.+++++-|++.+.+.-.-. | +. ..-+.|..+-+.|.+.|-..+..|+.|+.
T Consensus 132 ~~~e~~DA~~fA~WGvDylK~D~C~~---~-----~~---~~~~~y~~m~~AL~~tGRpi~~slc~wg~ 189 (386)
T PLN02808 132 LGHEEQDAKTFASWGIDYLKYDNCEN---T-----GT---SPQERYPKMSKALLNSGRPIFFSLCEWGQ 189 (386)
T ss_pred hHHHHHHHHHHHHhCCCEEeecCcCC---C-----Cc---cHHHHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 56789999999999999999886532 1 21 12367999999999999766778888764
No 265
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=30.92 E-value=4.2e+02 Score=24.21 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe-eEEecCCCCCchhhh
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIK-PFVTLLHFDPPQALE 88 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~P~~l~ 88 (223)
-+.+..+.++|.+.+|+++ | |.++.+-..++.+.|++.|.. |+|.=.|||.-..|.
T Consensus 34 v~QI~~L~~aGceivRvav------p--------~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~ 90 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAV------P--------DMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALE 90 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE---------------SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcC------C--------CHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHH
Confidence 3567888999999999986 2 346667789999999999987 777767999766654
No 266
>PRK04302 triosephosphate isomerase; Provisional
Probab=30.84 E-value=1.4e+02 Score=24.79 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=30.8
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
++.++++|++.+=+.-+ .|..| .+. ..+.++.+++.||.|+++..
T Consensus 78 ~~~l~~~G~~~vii~~s-er~~~---------~~e---~~~~v~~a~~~Gl~~I~~v~ 122 (223)
T PRK04302 78 PEAVKDAGAVGTLINHS-ERRLT---------LAD---IEAVVERAKKLGLESVVCVN 122 (223)
T ss_pred HHHHHHcCCCEEEEecc-ccccC---------HHH---HHHHHHHHHHCCCeEEEEcC
Confidence 68889999998833332 12222 111 47889999999999998774
No 267
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=30.83 E-value=1.1e+02 Score=27.84 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCCEEEecc-ccc-ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 18 YKEDIKLMKKVGLDSFRFSI-SWT-RILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
-+++++.++++|+|.+-+++ |=+ .+...- |+... .+-..+.|+.+++.+..+-++|. +++|.
T Consensus 121 ~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l---~R~~~--~~~~~~~i~~~~~~~~~v~~dlI-~GlPg 184 (394)
T PRK08898 121 EAEKFAQFRASGVNRLSIGIQSFNDAHLKAL---GRIHD--GAEARAAIEIAAKHFDNFNLDLM-YALPG 184 (394)
T ss_pred CHHHHHHHHHcCCCeEEEecccCCHHHHHHh---CCCCC--HHHHHHHHHHHHHhCCceEEEEE-cCCCC
Confidence 46899999999999777777 222 222211 22211 13456777888887777877776 67775
No 268
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=30.38 E-value=92 Score=26.31 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=35.6
Q ss_pred EecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 34 RFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 34 R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
-.|.+|+...-... .|.+..+.++...++|+.++++|+++.+ |+.|
T Consensus 162 ~~S~~~~~~~~~~~-~g~~~~~q~~~l~~~v~~a~~~Gl~vr~----Wtv~ 207 (228)
T cd08577 162 MISASFAKFSKWNG-KGDTPEDEKEKLKSIIDKAHARGKKVRF----WGTP 207 (228)
T ss_pred EEEccHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE----EccC
Confidence 34567777754422 3888999999999999999999999876 6655
No 269
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=30.06 E-value=2.5e+02 Score=27.42 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=19.3
Q ss_pred cccChHH-----HHHHHHHcCCCEEEeccc
Q 046612 14 FYHHYKE-----DIKLMKKVGLDSFRFSIS 38 (223)
Q Consensus 14 ~y~~~~e-----Di~l~~~lG~~~~R~si~ 38 (223)
.|..|++ .++++++.|++.+|+.-+
T Consensus 89 Gy~~~~d~vv~~~v~~a~~~Gidv~Rifd~ 118 (596)
T PRK14042 89 GYRNYADDVVRAFVKLAVNNGVDVFRVFDA 118 (596)
T ss_pred ccccCChHHHHHHHHHHHHcCCCEEEEccc
Confidence 4666666 578899999999997643
No 270
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=29.88 E-value=1.6e+02 Score=25.19 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=49.0
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCC
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 95 (223)
..+++-++.++++|++++=+|- ++ -.++. +-..++|+.++++|++|+.=+-- +...-.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~--------G~--~~i~~---~~~~rlI~~~~~~g~~v~~EvG~---------K~~~~~ 128 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISD--------GS--MEISL---EERCNLIERAKDNGFMVLSEVGK---------KSPEKD 128 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcC--------Cc--cCCCH---HHHHHHHHHHHhCCCeEeccccc---------cCCccc
Confidence 4677788999999999988772 21 23444 44588999999999999854421 111101
Q ss_pred ChHhHHHHHHHHHHHHHH
Q 046612 96 SPKIVKDFVDYGDFCFKT 113 (223)
Q Consensus 96 ~~~~~~~f~~y~~~~~~~ 113 (223)
....++...+.++.+.+.
T Consensus 129 ~~~~~~~~i~~~~~~LeA 146 (237)
T TIGR03849 129 SELTPDDRIKLINKDLEA 146 (237)
T ss_pred ccCCHHHHHHHHHHHHHC
Confidence 123566777777766643
No 271
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=29.80 E-value=2.5e+02 Score=24.81 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=37.6
Q ss_pred cCCcccChHHHHHHHHHcCCCEEEeccc-ccc-cccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEE
Q 046612 11 ASGFYHHYKEDIKLMKKVGLDSFRFSIS-WTR-ILPKGKISGGVNPLGVKFYKDLINELLANDIKPFV 76 (223)
Q Consensus 11 a~d~y~~~~eDi~l~~~lG~~~~R~si~-W~r-i~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 76 (223)
.++-+..-++-++.+++.|++.+.+||. -.. +.-.- +|.- ...+...+.|+.|++.|+.+.+
T Consensus 87 ~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~--rg~~--g~f~~v~~~i~~l~~~g~~v~v 150 (358)
T TIGR02109 87 ITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRI--AGYK--NAFEQKLAMARAVKAAGLPLTL 150 (358)
T ss_pred EeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHh--cCCc--cHHHHHHHHHHHHHhCCCceEE
Confidence 3444555578889999999999998884 211 11110 1211 1234445667788889987655
No 272
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=29.79 E-value=98 Score=28.10 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 20 EDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 20 eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
+-+++|+++|++.+=.|+- .|+. . ..+.++.+.++++.+++.||++++++.
T Consensus 18 ~yi~~a~~~Gf~~iFTSL~----ipe~---~--~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 18 AYIEKAAKYGFKRIFTSLH----IPED---D--PEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp HHHHHHHCTTEEEEEEEE------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHCCCCEEECCCC----cCCC---C--HHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 3478889999888777653 3443 1 135678899999999999999999985
No 273
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=29.43 E-value=2.7e+02 Score=23.97 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=43.9
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCc
Q 046612 49 SGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 49 ~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
+|.+|.++ +++.++.+.+.|+.-++.+-+- |-+ ..-+.+...+..+.+.+.-++++....-....+
T Consensus 16 dg~iD~~~---l~~~i~~l~~~Gv~gi~~~Gs~----------GE~-~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~ 81 (292)
T PRK03170 16 DGSVDFAA---LRKLVDYLIANGTDGLVVVGTT----------GES-PTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNS 81 (292)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCcC----------Ccc-ccCCHHHHHHHHHHHHHHhCCCCcEEeecCCch
Confidence 58999966 5999999999999999866431 111 112345556666666666677777666555444
No 274
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.43 E-value=2e+02 Score=24.95 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=56.1
Q ss_pred HHHHHHcC--CCEEEecccccccc--c---CCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC-CC-ch---h--h
Q 046612 22 IKLMKKVG--LDSFRFSISWTRIL--P---KGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHF-DP-PQ---A--L 87 (223)
Q Consensus 22 i~l~~~lG--~~~~R~si~W~ri~--P---~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~-~~-P~---~--l 87 (223)
++.+++.| ++++=+.+.|..-- + .+-..=.+|.+..--..++|+.|++.|+++++.++=. .. |. . +
T Consensus 31 ~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~ 110 (292)
T cd06595 31 MDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEM 110 (292)
T ss_pred HHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHH
Confidence 45555544 56777777885421 0 1100013343333345899999999999999877532 11 11 1 1
Q ss_pred hhhh-----------CCCCChHhHHHHHHHHHHHHHHhCCCcc-cEEeecCCccc
Q 046612 88 EEEY-----------GGFLSPKIVKDFVDYGDFCFKTYGDRVK-LWASMNEPNGM 130 (223)
Q Consensus 88 ~~~~-----------gg~~~~~~~~~f~~y~~~~~~~~~~~v~-~w~t~NEp~~~ 130 (223)
.... ..++||+..+.|.+-....+... .|+ +|.=+|||...
T Consensus 111 ~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~--Gidg~W~D~~E~~~~ 163 (292)
T cd06595 111 AKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQ--GVDFWWLDWQQGNRT 163 (292)
T ss_pred HHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhc--CCcEEEecCCCCccc
Confidence 1111 12556666655433333223233 344 58889998654
No 275
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.05 E-value=57 Score=28.53 Aligned_cols=49 Identities=20% Similarity=0.324 Sum_probs=35.3
Q ss_pred CeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEee
Q 046612 72 IKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASM 124 (223)
Q Consensus 72 i~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~ 124 (223)
++|.++..|-+-|.-+.- . .||.....|++|++.+.....++.+.|++-
T Consensus 18 ~~~~v~~~~~~~~li~~I--p--GNPG~~gFY~~F~~~L~~~l~~r~~~wtIs 66 (301)
T KOG3975|consen 18 LKPWVTKSGEDKPLIVWI--P--GNPGLLGFYTEFARHLHLNLIDRLPVWTIS 66 (301)
T ss_pred eeeeeccCCCCceEEEEe--c--CCCCchhHHHHHHHHHHHhcccccceeEEe
Confidence 456666666444432222 1 277778899999999999999999988764
No 276
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=28.92 E-value=2.4e+02 Score=24.50 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=68.3
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHH
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVK 101 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~ 101 (223)
+..+.+.|+..=-+.+|=.|=+|-|+.+...-+++++-..+-|..+++.||+.| -|--||.- .+ + .++++..
T Consensus 60 ~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtI-QLAGYDVY--YE-~----~d~eT~~ 131 (287)
T COG3623 60 VNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTI-QLAGYDVY--YE-E----ADEETRQ 131 (287)
T ss_pred HHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeE-eeccceee--ec-c----CCHHHHH
Confidence 466788899988888999999999754445567899999999999999999987 34344432 11 1 3677888
Q ss_pred HHHH---HHHHHHHHhCCCcccEEeecCCccc
Q 046612 102 DFVD---YGDFCFKTYGDRVKLWASMNEPNGM 130 (223)
Q Consensus 102 ~f~~---y~~~~~~~~~~~v~~w~t~NEp~~~ 130 (223)
+|.+ .|-.++++++- .-..+++.-|-+-
T Consensus 132 rFi~g~~~a~~lA~~aqV-~lAvEiMDtpfm~ 162 (287)
T COG3623 132 RFIEGLKWAVELAARAQV-MLAVEIMDTPFMN 162 (287)
T ss_pred HHHHHHHHHHHHHHhhcc-EEEeeecccHHHH
Confidence 8864 44455666542 2224455555443
No 277
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=28.72 E-value=3e+02 Score=21.90 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch-------------
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ------------- 85 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~------------- 85 (223)
.-|.+.+|+.|++.+=+=+. ++ .+..|+ .|..-++.++++||. +..+||..|.
T Consensus 11 ~id~~~~k~~gi~fviiKat------eG--~~y~D~----~~~~~~~~a~~aGl~--~G~Yhy~~~~~~a~~qA~~f~~~ 76 (184)
T cd06525 11 NINFNAVKDSGVEVVYIKAT------EG--TTFVDS----YFNENYNGAKAAGLK--VGFYHFLVGTSNPEEQAENFYNT 76 (184)
T ss_pred CCCHHHHHhCCCeEEEEEec------CC--CcccCH----hHHHHHHHHHHCCCc--eEEEEEeeCCCCHHHHHHHHHHh
Confidence 35788888888765433332 33 144565 678889999999984 5778876651
Q ss_pred ----------hhhhh-hCCCCChHhHHHHHHHHHHHHHHhCCCcccEE
Q 046612 86 ----------ALEEE-YGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWA 122 (223)
Q Consensus 86 ----------~l~~~-~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~ 122 (223)
++.-+ ..+.......+....|++.+-++.|-++-.+.
T Consensus 77 ~~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~f~~~v~~~~G~~~~iY~ 124 (184)
T cd06525 77 IKGKKMDLKPALDVEVNFGLSKDELNDYVLRFIEEFEKLSGLKVGIYT 124 (184)
T ss_pred ccccCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 11000 01222233456667777777777676654444
No 278
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=28.34 E-value=1.2e+02 Score=23.96 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCeeE--EecCCCCCchhhhhhh-CCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCC
Q 046612 58 KFYKDLINELLANDIKPF--VTLLHFDPPQALEEEY-GGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEP 127 (223)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~--vtL~h~~~P~~l~~~~-gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp 127 (223)
+=|+++++.|++.++..- ..+.+=-+|.-+-.+. .| |=...++|..|-+++++-++.+++.-.+.+|.
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~eaVPG--nIR~AeHFv~flkR~veylk~rlrv~~v~~e~ 86 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKEAVPG--NIRRAEHFVAFLKRFVEYLKTRLRVQHVISES 86 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhhcCCc--hHHhHHHHHHHHHHHHHHHHHHhhhcceeecC
Confidence 459999999999986533 1233334455443221 22 22347899999999999999988877777773
No 279
>PLN02692 alpha-galactosidase
Probab=28.17 E-value=1.8e+02 Score=27.05 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=44.6
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP 83 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~ 83 (223)
+..++.|.+++++-|++.+.+.-.=. . +. ...+.|..+-+.|.+-|-..+..|+.|+.
T Consensus 156 ~g~e~~DA~~fA~WGvDylK~D~C~~----~----~~---~~~~~y~~m~~AL~~tGRpI~~SlC~wg~ 213 (412)
T PLN02692 156 LGHEEQDAKTFASWGIDYLKYDNCNN----D----GS---KPTVRYPVMTRALMKAGRPIFFSLCEWGD 213 (412)
T ss_pred hHHHHHHHHHHHhcCCCEEeccccCC----C----Cc---chhHHHHHHHHHHHHhCCCeEEEecCCCc
Confidence 56789999999999999999875521 1 11 11267999999999999877778888765
No 280
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.07 E-value=1.9e+02 Score=26.19 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=46.1
Q ss_pred CCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 12 SGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 12 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
.+......+....+++.|++.+|-+.-=+|--|.+.+ | +. ++.+..+.+.+++.||..+.+.++
T Consensus 128 iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~-g-~~---~e~l~~L~~~~~~~Gl~~~t~v~d 191 (360)
T PRK12595 128 VESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQ-G-LG---VEGLKILKQVADEYGLAVISEIVN 191 (360)
T ss_pred ccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCcccc-C-CC---HHHHHHHHHHHHHcCCCEEEeeCC
Confidence 3456667777888999999999966544555554321 2 23 356677888899999999999975
No 281
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=27.91 E-value=23 Score=24.46 Aligned_cols=19 Identities=42% Similarity=0.901 Sum_probs=15.3
Q ss_pred CCcccChH--HHHHHHHHcCC
Q 046612 12 SGFYHHYK--EDIKLMKKVGL 30 (223)
Q Consensus 12 ~d~y~~~~--eDi~l~~~lG~ 30 (223)
.|||..|+ +|++.|+++|+
T Consensus 46 adFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 46 ADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHccChHHHHHHHHHcCC
Confidence 56777764 69999999996
No 282
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=27.81 E-value=3.3e+02 Score=23.97 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=53.4
Q ss_pred cCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhh
Q 046612 11 ASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEE 90 (223)
Q Consensus 11 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 90 (223)
+...+..-.+-.+..|+.|.+.+|-+.-=+|--|-.+ .-+.+++|++.. +...+.|+-++.-+
T Consensus 54 svEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsF--QGlge~gL~~l~---~a~~~~Gl~vvtEv------------ 116 (286)
T COG2876 54 SVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSF--QGLGEEGLKLLK---RAADETGLPVVTEV------------ 116 (286)
T ss_pred ccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccc--cccCHHHHHHHH---HHHHHcCCeeEEEe------------
Confidence 4556777777788889999999999998888777654 335566664443 34556776555433
Q ss_pred hCCCCChHhHHHHHHHHHHH
Q 046612 91 YGGFLSPKIVKDFVDYGDFC 110 (223)
Q Consensus 91 ~gg~~~~~~~~~f~~y~~~~ 110 (223)
.++..++.+.+|++.+
T Consensus 117 ----m~~~~~e~~~~y~Dil 132 (286)
T COG2876 117 ----MDVRDVEAAAEYADIL 132 (286)
T ss_pred ----cCHHHHHHHHhhhhHH
Confidence 2455677777777644
No 283
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.75 E-value=2.3e+02 Score=26.52 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=47.3
Q ss_pred CcccCCccc--ChHHHHHHHHHcCCCEEEecc----ccccc---ccCC-----------------------------CCC
Q 046612 8 GDIASGFYH--HYKEDIKLMKKVGLDSFRFSI----SWTRI---LPKG-----------------------------KIS 49 (223)
Q Consensus 8 ~~~a~d~y~--~~~eDi~l~~~lG~~~~R~si----~W~ri---~P~~-----------------------------~~~ 49 (223)
-|+|-.++. ..++=|+.|+..++|.+.+-+ +|.-- .|+- ..+
T Consensus 12 LDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (445)
T cd06569 12 LDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGS 91 (445)
T ss_pred eeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccC
Confidence 355555554 255668999999999998877 35311 1110 002
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 50 GGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 50 g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
|.+..+. ++++++.++++||++|.-+ |+|.
T Consensus 92 g~YT~~d---i~eiv~yA~~rgI~VIPEI---D~PG 121 (445)
T cd06569 92 GYYSRAD---YIEILKYAKARHIEVIPEI---DMPG 121 (445)
T ss_pred CccCHHH---HHHHHHHHHHcCCEEEEcc---CCch
Confidence 4567744 5999999999999988755 4554
No 284
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=27.71 E-value=2.2e+02 Score=26.22 Aligned_cols=69 Identities=9% Similarity=0.064 Sum_probs=48.0
Q ss_pred cccChHHHHHHHHHcCCCEEEecccccccccCCCC--C-CCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 14 FYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKI--S-GGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~--~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
....++++++.+.++|++.+.+-. =.++|.... . -..+.+..+.|+...+.|.++|.+. ..+.||..|.
T Consensus 206 t~e~~~~~l~~~~~l~~~~is~y~--L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~-yei~~far~~ 277 (430)
T PRK08208 206 THASWMESLDQALVYRPEELFLYP--LYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ-TSMRMFRRND 277 (430)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcc--ccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE-EeecceecCC
Confidence 344688899999999998777663 233342100 0 1234666789999999999999988 4677777653
No 285
>PLN03153 hypothetical protein; Provisional
Probab=27.67 E-value=67 Score=30.76 Aligned_cols=39 Identities=31% Similarity=0.466 Sum_probs=22.8
Q ss_pred HHHhCC-CeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHH
Q 046612 66 ELLAND-IKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYG 107 (223)
Q Consensus 66 ~l~~~g-i~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~ 107 (223)
.+.+.| ++|+|+||||+. | +--|.+-...+.++.+..-+
T Consensus 326 G~les~p~~P~vSlHH~~~--~-~p~fP~~~~~~~~~~l~~a~ 365 (537)
T PLN03153 326 GLLSSHPIAPFVSIHHVEA--V-DPFYPGLSSLDSLKLFTRAM 365 (537)
T ss_pred hHhhcCCCCCceeeeeccc--c-ccccCCcchHHHHHHHHHHh
Confidence 345555 999999999986 1 11122323345566665544
No 286
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=27.46 E-value=2.1e+02 Score=19.72 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=30.6
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 23 KLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 23 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
+.++.+|+..+|-| ... .+.+-+.++++.|+ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s~r--------gg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SSR--------GGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------CCC--------cHHHHHHHHHHHHH-CCCeEEEeC
Confidence 67799999999999 221 34456799999998 787777765
No 287
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=27.46 E-value=3.7e+02 Score=22.51 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=29.8
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeE
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPF 75 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~ 75 (223)
+.++++.+.++|++.+-+...=++.... ..++. +..+++-+.+.++||++.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~gl~ls 62 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKG----VRLSE---ETAEKFKEALKENNIDVS 62 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCC----CCCCH---HHHHHHHHHHHHcCCCEE
Confidence 5577888888888888775543333211 23344 234555566667777643
No 288
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=27.40 E-value=73 Score=24.35 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhC-CCeeEEecCC
Q 046612 58 KFYKDLINELLAN-DIKPFVTLLH 80 (223)
Q Consensus 58 ~~y~~~i~~l~~~-gi~p~vtL~h 80 (223)
+.-.++-+.|++. |+++++++++
T Consensus 16 ~~V~~la~~L~~~~g~~V~lD~~~ 39 (150)
T PF08357_consen 16 EWVLALAEFLRQNCGIDVILDQWE 39 (150)
T ss_pred HHHHHHHHHHHhccCCceeecHHh
Confidence 4567778889999 9999999865
No 289
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=27.35 E-value=1.1e+02 Score=26.07 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEE------------ecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCee
Q 046612 19 KEDIKLMKKVGLDSFR------------FSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKP 74 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R------------~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p 74 (223)
+-|++.+++.|+..+| -.+.||-|.|.......+....-..+..+++.+++.|++-
T Consensus 55 Ev~~~~~~~~~i~vvRR~sGGGaV~hd~g~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~ 122 (248)
T COG0095 55 EVNLEYVKEDGIPVVRRPSGGGAVFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRALGVEG 122 (248)
T ss_pred HhhHHHHHHcCCcEEEEcCCCceEEecCCcEEEEEEECCCCccccHHHHHHHHHHHHHHHHHHcCCCe
Confidence 5688999999999999 3678999999861000233333455788889999999885
No 290
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=27.30 E-value=89 Score=27.01 Aligned_cols=56 Identities=9% Similarity=0.009 Sum_probs=40.2
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 23 KLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 23 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
+++.+++=...-+=+.++-++..+ .++++-+.++++.+++.|+.+++++-..|.|.
T Consensus 45 ~ii~~l~~~v~~vK~g~~lf~~~G-------~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpn 100 (261)
T TIGR02127 45 RIIDATAEYAAVVKPQVAFFERFG-------SEGFKALEEVIAHARSLGLPVLADVKRGDIGS 100 (261)
T ss_pred HHHHhcCCcceEEecCHHHHHhcC-------HHHHHHHHHHHHHHHHCCCeEEEEeeccChHH
Confidence 556666543333444444444432 57888899999999999999999999988883
No 291
>PLN02623 pyruvate kinase
Probab=27.24 E-value=83 Score=30.56 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCEEEecccc
Q 046612 19 KEDIKLMKKVGLDSFRFSISW 39 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W 39 (223)
+|-+..|-+.|+|.+|+.+|.
T Consensus 125 ~e~l~~li~aGmnv~RlNfSH 145 (581)
T PLN02623 125 REMIWKLAEAGMNVARLNMSH 145 (581)
T ss_pred HHHHHHHHHcCCCEEEEECCC
Confidence 688999999999999999987
No 292
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.03 E-value=2.1e+02 Score=24.74 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=39.0
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++.+=++-|=.|..=.. -| +...+-++.++++|++|+++.-
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E-----~d----~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGE-----TD----ELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEECcccccccccc-----ch----HHHHHHHHHHHHCCCeEEEEcC
Confidence 5789999999999999876664332 22 3567888999999999999984
No 293
>PRK10658 putative alpha-glucosidase; Provisional
Probab=27.00 E-value=5.2e+02 Score=25.57 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=58.5
Q ss_pred HHHHHHcCC--CEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC---Cchhhhh--h----
Q 046612 22 IKLMKKVGL--DSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD---PPQALEE--E---- 90 (223)
Q Consensus 22 i~l~~~lG~--~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~---~P~~l~~--~---- 90 (223)
++.+++.|+ +++-+.+.|.+-.--. +=.+|.+..---+++|+.|++.|+++++.+.-+- .|.+-+. +
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~--~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~v 366 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWC--DFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLL 366 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCcee--eeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEE
Confidence 456666665 5677777775432100 0123332211237899999999999998765321 1221100 0
Q ss_pred ------------------hCCCCChHhHHHHHHHHHHHHHHhCCCcc-cEEeecCC
Q 046612 91 ------------------YGGFLSPKIVKDFVDYGDFCFKTYGDRVK-LWASMNEP 127 (223)
Q Consensus 91 ------------------~gg~~~~~~~~~f~~y~~~~~~~~~~~v~-~w~t~NEp 127 (223)
+-.++||+..+.|.+..+.+.+ .| |+ +|.=+||+
T Consensus 367 k~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G--vdgfw~D~gE~ 419 (665)
T PRK10658 367 KRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG--VDCFKTDFGER 419 (665)
T ss_pred ECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC--CcEEEecCCce
Confidence 0126789999999888877654 33 44 46667886
No 294
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=26.94 E-value=1.3e+02 Score=26.92 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEecccccc---cccCCCCCCCCCh----hHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 22 IKLMKKVGLDSFRFSISWTR---ILPKGKISGGVNP----LGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~r---i~P~~~~~g~~n~----~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
++++|++|++.+=+.-.-.. +.|+.. ..+|- -.-+...++.++|+++||++.+-+.++|
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~--t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKY--TDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT---SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCC--CcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 78999999999876432111 223331 22332 1237789999999999999999777654
No 295
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=26.94 E-value=83 Score=27.87 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=34.6
Q ss_pred hHHHHHHHHHcCCCEEEec----ccc---cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 18 YKEDIKLMKKVGLDSFRFS----ISW---TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~s----i~W---~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
.++.++.|+++|++.+-.. ++. .++.|. ..+. +-+.+.++.+++.||++..++
T Consensus 142 ~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~-----~~s~---~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK-----KISS---EEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC-----CCCH---HHHHHHHHHHHHcCCCcccee
Confidence 4889999999999976421 111 111121 2233 556899999999999876554
No 296
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=26.90 E-value=1.5e+02 Score=23.51 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=35.5
Q ss_pred HHHHHHHHHcC-CCEEEeccc-ccccccCCCCCCC-CChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 19 KEDIKLMKKVG-LDSFRFSIS-WTRILPKGKISGG-VNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 19 ~eDi~l~~~lG-~~~~R~si~-W~ri~P~~~~~g~-~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
+++++.+.+.| ++.+.+|+. .+.....- .|. -+.+ +...+.|+.|++.|+.+.+..
T Consensus 102 ~~~l~~l~~~g~~~~v~isl~~~~~~~~~~--~g~~~~~~--~~~~~~i~~l~~~gi~~~i~~ 160 (191)
T TIGR02495 102 PRVLEELLEEGLVDYVAMDVKAPPEKYPEL--YGLEKNGS--NNILKSLEILLRSGIPFELRT 160 (191)
T ss_pred HHHHHHHHhcCCCcEEEEeccCChHHHHHH--HCCCCchH--HHHHHHHHHHHHcCCCEEEEE
Confidence 57788899988 688888885 43321111 121 1221 345678899999999876654
No 297
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=26.51 E-value=2.4e+02 Score=24.68 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=27.3
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHH----HHhCCCeeEEecCCCC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINE----LLANDIKPFVTLLHFD 82 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~----l~~~gi~p~vtL~h~~ 82 (223)
++...+.|+..||+| |.++|-.+- ....+.-.+.....++. ++++||..-.---||.
T Consensus 51 L~~n~~~~I~~yRis---S~liP~ash-p~~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP~qf~ 111 (275)
T PF03851_consen 51 LEYNIAHGIRFYRIS---SDLIPLASH-PEVGWDWEEEFAEELAEIGDLAKENGIRLSMHPDQFT 111 (275)
T ss_dssp HHHHHHTT--EEE-----TTSSTTTTS-TT--S-HHHHHHHHHHHHHHHHHHTT-EEEE---TT-
T ss_pred HHHHHHcCCCEEecC---cccCCCCCC-cccccchHHHHHHHHHHHHHHHHHcCCeEEecCCcce
Confidence 344578899999999 799997531 12222222334444443 5679999766443443
No 298
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=26.35 E-value=87 Score=26.61 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=36.0
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
.+.+.=+++++++|.+.+++-..+..-.+. ...-...++.++++.+.+++.||+..+=
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~----~~~~~~~~~~l~~l~~~a~~~gi~l~lE 142 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVFHPGSYLGQSK----EEGLKRVIEALNELIDKAETKGVVIALE 142 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCH----HHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 345666899999999999884432111010 1111234566777777777889986663
No 299
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=26.32 E-value=86 Score=30.28 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 54 PLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 54 ~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
.+|+.-+.+.|+.+++.|+.++|.+++|+.-
T Consensus 355 ~sGl~NL~RHIenvr~FGvPvVVAINKFd~D 385 (557)
T PRK13505 355 KKGFANLERHIENIRKFGVPVVVAINKFVTD 385 (557)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 4678899999999999999999999999863
No 300
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.10 E-value=2.6e+02 Score=26.02 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=47.8
Q ss_pred cccChHHHHHHHHHcCCCEEEec----ccccc-cccC-CCCCCCCC-hhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 14 FYHHYKEDIKLMKKVGLDSFRFS----ISWTR-ILPK-GKISGGVN-PLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~s----i~W~r-i~P~-~~~~g~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
....+.++++.+.++|++.+.+- ..|.+ .+.. +. ....+ .+.++.|...++.|.++|.+++ .+.||..|.
T Consensus 217 t~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~-~~lp~~~~~~~~~~~~~~~L~~~Gy~~~-~~~~far~~ 293 (453)
T PRK13347 217 TVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDE-AALPDAEERLRQARAVADRLLAAGYVPI-GLDHFALPD 293 (453)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCc-cCCcCHHHHHHHHHHHHHHHHHCCCEEE-eccceeCCC
Confidence 34458899999999999877653 23422 1110 10 01222 3557899999999999999885 888998874
No 301
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=26.08 E-value=1.1e+02 Score=22.09 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 50 GGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 50 g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+|..|+....++.+.++++|+++.++=.
T Consensus 59 ~~iDssgi~~L~~~~~~~~~~g~~~~l~~~ 88 (117)
T PF01740_consen 59 SFIDSSGIQALVDIIKELRRRGVQLVLVGL 88 (117)
T ss_dssp SEESHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 457889999999999999999999998653
No 302
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=26.00 E-value=1.5e+02 Score=25.88 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCC
Q 046612 58 KFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGD 116 (223)
Q Consensus 58 ~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~ 116 (223)
.-...-|+.|+++|+++++.|--++-- .+..+++..+.|+++ +...|+.
T Consensus 59 ~~~~~dI~~cq~~G~KVlLSIGG~~~~-------~~~~s~~~a~~Fa~~---l~~~~~~ 107 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLSIGGAGGS-------YSLSSDADAKDFADY---LWNAFGG 107 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEEccCCCCC-------cCCCCHHHHHHHHHH---HHHHhCC
Confidence 456888999999999999999433211 112344455555555 5555543
No 303
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=25.60 E-value=1.8e+02 Score=22.94 Aligned_cols=59 Identities=12% Similarity=-0.009 Sum_probs=40.4
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 23 KLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 23 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
++.+.+|+..+-+.+++....+... ...-+...-.+|..+.+.+.++|+..++|=||.+
T Consensus 52 ~~~~~~gi~~~~~~~~~~~~~~~~~-~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 52 QFCKKLNIPLEIKKVDVKALAKGKK-KNLEEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHHHcCCCEEEEEecchhhccccC-CCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 4558999999999998765443320 0111223345778888889999999999888733
No 304
>PRK08445 hypothetical protein; Provisional
Probab=25.52 E-value=3e+02 Score=24.67 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=38.7
Q ss_pred hHHHHHHHHHcCCCEEE-eccc-----c-cccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKEDIKLMKKVGLDSFR-FSIS-----W-TRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R-~si~-----W-~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
.+|.++.+|++|++.|= .+++ = .++.|.+ ... +-+.+.++.+++.||+.-.++.
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~-----~t~---~~~i~~i~~a~~~Gi~~~sg~i 203 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKK-----LDS---DRWLEVHRQAHLIGMKSTATMM 203 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCC-----CCH---HHHHHHHHHHHHcCCeeeeEEE
Confidence 48999999999999774 4443 1 2333543 333 3357999999999999998864
No 305
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=25.47 E-value=3.1e+02 Score=22.03 Aligned_cols=60 Identities=8% Similarity=0.110 Sum_probs=36.6
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 23 KLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 23 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
++|+..|++++-.--.=..+.|+++ +.++.....-+.+-.+.+.+.+-..+|.+|+=..|
T Consensus 37 ~~L~~~G~~V~ltr~~d~~~~~~~~--~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~ 96 (189)
T TIGR02883 37 DYLQEQGALVVMTREDDSDLASEGT--KGYSRRKIEDLRKRVKLINESEADLFISIHLNAFP 96 (189)
T ss_pred HHHHhCCCEEEEEecCCcCcccccc--ccccccccCCHHHHHHHHHhcCCCEEEEEecCCCC
Confidence 5567889999865443333333331 33333222234666778888899999999874444
No 306
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=25.45 E-value=1.5e+02 Score=23.47 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=26.7
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeeEEecCCC
Q 046612 50 GGVNPLGVKFYKDLINELLANDIKPFVTLLHF 81 (223)
Q Consensus 50 g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 81 (223)
..+|.+..+...++|..+.+.|..++++.|..
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 56788888889999999988899888888753
No 307
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.43 E-value=1e+02 Score=25.87 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=34.4
Q ss_pred ccccc------ccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 38 SWTRI------LPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 38 ~W~ri------~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
+|||. .+.. .|.+...+...+.-+++...++|++-+||..-
T Consensus 100 EsSRF~vd~~~a~~~--~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~ 146 (209)
T COG3916 100 ESSRFAVDKPSARRA--AGGVSPAAYELFAGMIEYALARGITGIVTVTD 146 (209)
T ss_pred EEeeeeeccccchhh--cCCccHHHHHHHHHHHHHHHHcCCceEEEEEc
Confidence 78888 4444 37777888899999999999999999999964
No 308
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=25.29 E-value=3.2e+02 Score=21.07 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHhCCCeeEEecCC-CCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCC-cccEEee
Q 046612 54 PLGVKFYKDLINELLANDIKPFVTLLH-FDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDR-VKLWASM 124 (223)
Q Consensus 54 ~~~l~~y~~~i~~l~~~gi~p~vtL~h-~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~-v~~w~t~ 124 (223)
.+..+.++.+|+.+++.|.++++...- ...+.|.. ......+.+..|.+..+.++++.+=. |+.|..+
T Consensus 79 ~~~~~~~~~li~~~~~~~~~~il~~~~p~~~~~~~~---~~~~~~~~~~~~n~~~~~~a~~~~v~~vd~~~~~ 148 (183)
T cd04501 79 EMIKDNIRSMVELAEANGIKVILASPLPVDDYPWKP---QWLRPANKLKSLNRWLKDYARENGLLFLDFYSPL 148 (183)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCcCccccch---hhcchHHHHHHHHHHHHHHHHHcCCCEEechhhh
Confidence 355788999999999999998875421 00011110 00123456778888888888886422 3344443
No 309
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=25.26 E-value=2.8e+02 Score=20.56 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhC-CCeeEEec
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLAN-DIKPFVTL 78 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~-gi~p~vtL 78 (223)
+...-++.|++-|++++.||-.=..=-|. + .--+++++.+.++++ ||+++...
T Consensus 53 ~~~~~~~~l~~~~~d~IHlssC~~~~~~~----~-----~CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 53 KLVRRIKKLKKNGADVIHLSSCMVKGNPH----G-----PCPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCEecCCCC----C-----CCCCHHHHHHHHHHHhCCCEeeec
Confidence 34556788899999999998644332222 1 112367778888777 99777543
No 310
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=25.21 E-value=1.8e+02 Score=23.77 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=47.6
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCC-CeeEEecCCCCCchhhhhhhCCCCChHhH
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLAND-IKPFVTLLHFDPPQALEEEYGGFLSPKIV 100 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~g-i~p~vtL~h~~~P~~l~~~~gg~~~~~~~ 100 (223)
.++|+++-.+.|=+.+.-. ++. . +-.+....+|+.+++.. =+|||.+-|...|....+. ...+..
T Consensus 52 a~~ia~~~a~~~~ld~~~N---~~~---~----~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~----~~~~~~ 117 (178)
T PF14606_consen 52 ADLIAEIDADLIVLDCGPN---MSP---E----EFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN----SRGETV 117 (178)
T ss_dssp HHHHHHS--SEEEEEESHH---CCT---T----THHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS------TTS--H
T ss_pred HHHHhcCCCCEEEEEeecC---CCH---H----HHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCc----hHHHHH
Confidence 4556666666665555433 221 1 22367789999999888 7899988877766543321 123567
Q ss_pred HHHHHHHHHHHHHh---CCCcccEE
Q 046612 101 KDFVDYGDFCFKTY---GDRVKLWA 122 (223)
Q Consensus 101 ~~f~~y~~~~~~~~---~~~v~~w~ 122 (223)
+.+.+-.+.+++.+ |++=-|++
T Consensus 118 ~~~~~~~r~~v~~l~~~g~~nl~~l 142 (178)
T PF14606_consen 118 EEFREALREAVEQLRKEGDKNLYYL 142 (178)
T ss_dssp HHHHHHHHHHHHHHHHTT-TTEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEe
Confidence 88888888888888 66543444
No 311
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=25.20 E-value=2e+02 Score=24.40 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=25.0
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 50 GGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 50 g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
|.++.+.+++.++.++...+.+-..+|-.||
T Consensus 158 G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hh 188 (267)
T cd07396 158 GGIGEEQLQWLRNELQEADANGEKVIIFSHF 188 (267)
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCeEEEEEec
Confidence 6788889999999999988777666666665
No 312
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=25.14 E-value=1e+02 Score=27.64 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=30.5
Q ss_pred CChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhh
Q 046612 52 VNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEE 90 (223)
Q Consensus 52 ~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 90 (223)
.|+.-+.+|+.+|.+|.++|.++++|.-.++.=.-|-+.
T Consensus 8 ~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~ 46 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL 46 (335)
T ss_pred CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH
Confidence 355677899999999999999999999877654333333
No 313
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=25.10 E-value=1.2e+02 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=24.1
Q ss_pred ChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 53 NPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 53 n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
+++..++..++.+.|+++||.+.++..
T Consensus 11 ~~~~~~~a~~l~~~L~~~gi~v~~d~~ 37 (94)
T PF03129_consen 11 DEEIIEYAQELANKLRKAGIRVELDDS 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 667889999999999999999998773
No 314
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=25.06 E-value=1.8e+02 Score=23.51 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCC--EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 19 KEDIKLMKKVGLD--SFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 19 ~eDi~l~~~lG~~--~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
..|...+|..|++ .+|.+ +| .+..|+ .+..-++.++++||. +..+||..|
T Consensus 15 ~~dw~~vk~~Gi~faiikat--------eG--~~~~D~----~~~~n~~~A~~aGl~--vG~Yhf~~~ 66 (192)
T cd06522 15 VADYNKLKNYGVKAVIVKLT--------EG--TTYRNP----YAASQIANAKAAGLK--VSAYHYAHY 66 (192)
T ss_pred HHHHHHHHHcCCCEEEEEEc--------CC--CCccCh----HHHHHHHHHHHCCCe--eEEEEEEec
Confidence 3488899999998 45543 34 245665 578889999999994 578888765
No 315
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=25.05 E-value=1.9e+02 Score=25.51 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=37.3
Q ss_pred ChHHHHHHHHHcCCCE---EEecccc-c-----ccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 17 HYKEDIKLMKKVGLDS---FRFSISW-T-----RILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~---~R~si~W-~-----ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
....|+++++++.-+. +++||.= . .+||.- ... +-=-+.+..|.++||.+.+.+
T Consensus 127 lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~a-----psp---~~Ri~al~~l~eaGi~~~v~v 189 (297)
T COG1533 127 LVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRA-----PSP---EERLEALKELSEAGIPVGLFV 189 (297)
T ss_pred chhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCC-----cCH---HHHHHHHHHHHHCCCeEEEEE
Confidence 4567999999777664 6777643 2 267753 222 223678889999999988876
No 316
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=24.40 E-value=4.9e+02 Score=22.92 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=30.1
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 50 GGVNPLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 50 g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
+-++.+.+..++++.+.+.++|-+.++=|+|-+
T Consensus 69 ~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G 101 (336)
T cd02932 69 GLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAG 101 (336)
T ss_pred eecCHHHHHHHHHHHHHHHhcCCcEEEEccCCC
Confidence 567889999999999999999999999999953
No 317
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=24.39 E-value=2.5e+02 Score=26.12 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=46.1
Q ss_pred cChHHHHHHHHHcCCCEEEec---c-cccccccCCCCCCCC-----ChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 16 HHYKEDIKLMKKVGLDSFRFS---I-SWTRILPKGKISGGV-----NPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~s---i-~W~ri~P~~~~~g~~-----n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
..+++|++.+.++|.+.+.+- + ..+.+.-.-. .|.+ +.+..+.|....+.|.++|.+.+ .+.||..|.
T Consensus 230 e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~-~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~~y-eis~far~~ 306 (449)
T PRK09058 230 EIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVE-KGKLPPPATPAERADMYAYGVEFLAKAGWRQL-SNSHWARTT 306 (449)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHH-cCCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE-eeeeeecCC
Confidence 358899999999998865543 2 2222221100 1322 34567899999999999999885 777888875
No 318
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=24.36 E-value=1.2e+02 Score=25.01 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=30.0
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCC
Q 046612 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLAND 71 (223)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~g 71 (223)
.+..++++|++++|+.-.-.. ..+-.+-++.|++.++.+.+-+
T Consensus 161 ~l~~L~~~Gv~~~rI~~r~~~--------~~~~~~iv~~Y~~~l~~~~~g~ 203 (233)
T PF01136_consen 161 ELPELKDAGVDSFRIDGRTES--------PEYIEEIVKAYREALDNPESGK 203 (233)
T ss_pred HHHHHHHcCCCEEEEcCccCC--------HHHHHHHHHHHHHHHHHHHhCC
Confidence 456667779999999764422 1233467888999998877665
No 319
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=24.36 E-value=2.2e+02 Score=22.95 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=43.5
Q ss_pred hHHHHHHHHHcCCCEEEecc--cccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC
Q 046612 18 YKEDIKLMKKVGLDSFRFSI--SWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP 83 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si--~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~ 83 (223)
+.+-++...+.|.+.+|+.- .|. . .. ..+.+..|...+|.+.... |+..|+.||.
T Consensus 107 ~~~~~~~a~~~G~~~lRv~ge~~w~-----~---~~-~~~~l~~yE~~ln~~~~~~--~~~~lC~Yd~ 163 (191)
T PF14417_consen 107 WRAALEQALAEGYRGLRVIGEMTWA-----L---RS-GWEELLRYEALLNRLFAEH--PFTALCAYDR 163 (191)
T ss_pred HHHHHHHHHhCCCCcEEEEEechhh-----c---cc-cHHHHHHHHHHHHHHhcCC--CEEEEeccch
Confidence 55667777888999999875 564 2 12 7889999999999999887 8888887764
No 320
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=24.27 E-value=2.5e+02 Score=23.63 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEe
Q 046612 100 VKDFVDYGDFCFKTYGDRVKLWAS 123 (223)
Q Consensus 100 ~~~f~~y~~~~~~~~~~~v~~w~t 123 (223)
++.|.++.+.+-++|| .+.|+|
T Consensus 150 ~~~~~~~i~~~~~~~~--kPIWIT 171 (239)
T PF11790_consen 150 ADDFKDYIDDLHNRYG--KPIWIT 171 (239)
T ss_pred HHHHHHHHHHHHHHhC--CCEEEE
Confidence 7789999999999998 666776
No 321
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=24.24 E-value=2.4e+02 Score=21.90 Aligned_cols=56 Identities=14% Similarity=-0.026 Sum_probs=37.3
Q ss_pred HHHHcCCCEEEeccccc----cc--ccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCC
Q 046612 24 LMKKVGLDSFRFSISWT----RI--LPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHF 81 (223)
Q Consensus 24 l~~~lG~~~~R~si~W~----ri--~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 81 (223)
+.+.+|+....+.++.. .. .+.+ ...-+......+..+.+.++++|+..++|=||.
T Consensus 55 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~ 116 (185)
T cd01993 55 LAEELGIELEIVSFKEEYTDDIEVKKRGG--KSPCSLCGVLRRGLLNKIAKELGADKLATGHNL 116 (185)
T ss_pred HHHHcCCceEEEehhhhcchhhhhhccCC--CCCCCccHHHHHHHHHHHHHHcCCCEEEEcCCh
Confidence 44788999888887632 11 2222 122233344677888899999999999988873
No 322
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=24.21 E-value=6.3e+02 Score=24.09 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=48.1
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCC
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFL 95 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~ 95 (223)
.|.++-.++++++|+|..-+.= +--.....--++..-|....++-+..+.+||++.+++. |..|.-+ ||-.
T Consensus 183 qR~kDYAR~laSiGINg~v~NN----VNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin-faSP~~l----GgL~ 253 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNN----VNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN-FASPMEL----GGLK 253 (684)
T ss_pred HHHHHHHHHHhhcCcceEEecc----cccchhhhheechHhHHHHHHHHHHhhhccceEEEEec-cCCcccc----CCcC
Confidence 4567777889999999887642 11111000124455567778888999999999999995 8888654 6643
No 323
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=24.18 E-value=97 Score=27.24 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcCCCEEEeccc----ccccc---cCCCCCC---------CCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKEDIKLMKKVGLDSFRFSIS----WTRIL---PKGKISG---------GVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~----W~ri~---P~~~~~g---------~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
.++=|+.|+..++|.+-+-++ |+--. |+-...| .+..+. ++++++.++++||++|.-+-
T Consensus 20 ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~d---i~~lv~yA~~~gI~VIPeid 94 (351)
T PF00728_consen 20 IKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKED---IRELVAYAKERGIEVIPEID 94 (351)
T ss_dssp HHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHH---HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHH---HHHHHHHHHHcCCceeeecc
Confidence 566789999999999987763 32221 2110012 455544 59999999999999988653
No 324
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=23.90 E-value=2.7e+02 Score=21.93 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhCCCeeEEecCCCCCch-hhhhhhCCCCChHhHHHHHHHHHHHHHHhCC
Q 046612 55 LGVKFYKDLINELLANDIKPFVTLLHFDPPQ-ALEEEYGGFLSPKIVKDFVDYGDFCFKTYGD 116 (223)
Q Consensus 55 ~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~-~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~ 116 (223)
+..+-+.++|+.++++|.++++.... |. .+. .+....+....|.+..+.+++++|=
T Consensus 91 ~~~~nl~~ii~~~~~~~~~~il~tp~---~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~ 147 (198)
T cd01821 91 TYKEYLRRYIAEARAKGATPILVTPV---TRRTFD---EGGKVEDTLGDYPAAMRELAAEEGV 147 (198)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECCc---cccccC---CCCcccccchhHHHHHHHHHHHhCC
Confidence 34567788999999999999884321 10 111 1111223467888888999998873
No 325
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=23.87 E-value=1.9e+02 Score=24.38 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 19 KEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
.+.++.+.+.|+..+|+...+. |..|. ..+..+++.|.++|+...+-..
T Consensus 83 ~~~l~~~~~~g~rGvRl~~~~~---------~~~~~---~~~~~~~~~~~~~gl~v~~~~~ 131 (263)
T cd01311 83 DAELKEMHDAGVRGVRFNFLFG---------GVDNK---DELDEIAKRAAELGWHVQVYFD 131 (263)
T ss_pred HHHHHHHHHCCCeEEEEecccC---------CCCCH---HHHHHHHHHHHHcCCEEEEEeC
Confidence 6788788999999999885432 22244 4568899999999998777543
No 326
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.75 E-value=1.4e+02 Score=23.42 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=14.6
Q ss_pred CCcccChHHHHHH-HHHcCCCEEEecccc
Q 046612 12 SGFYHHYKEDIKL-MKKVGLDSFRFSISW 39 (223)
Q Consensus 12 ~d~y~~~~eDi~l-~~~lG~~~~R~si~W 39 (223)
|......++|++. ++++|++.+++.+.|
T Consensus 38 cpa~e~L~~~I~~aL~~~Gv~~V~V~i~~ 66 (146)
T TIGR02159 38 CPALEVIRQDIRDAVRALGVEVVEVSTSL 66 (146)
T ss_pred CchHHHHHHHHHHHHHhcCCCeEEEeEee
Confidence 3334445555533 445566666666555
No 327
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=23.72 E-value=4.8e+02 Score=22.74 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=33.6
Q ss_pred hHHHHHHHHHcCCCEEEecc-cccc-cccCCCCCCCCChhHHHHHHHHHHHHHhCCC-eeE
Q 046612 18 YKEDIKLMKKVGLDSFRFSI-SWTR-ILPKGKISGGVNPLGVKFYKDLINELLANDI-KPF 75 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si-~W~r-i~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi-~p~ 75 (223)
..+.++.+++.|++.+.+|+ +... ..-.- .+..+ ++...+.|+.+++.|+ .+.
T Consensus 107 l~~~~~~L~~agl~~i~ISlds~~~e~~~~i--~~~~~---~~~vl~~i~~~~~~g~~~v~ 162 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSLDSLDPERFKAI--TGRDR---LDQVLAGIDAALAAGLTPVK 162 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCCHHHhccC--CCCCC---HHHHHHHHHHHHHCCCCcEE
Confidence 46778899999999888888 3321 01110 12222 3556778888899998 443
No 328
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=23.65 E-value=1.7e+02 Score=27.19 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=21.0
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 50 GGVNPLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 50 g~~n~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
+.|+. +|++++++.+++.||-++-+
T Consensus 214 nVys~---~HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 214 NVYSE---DHLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred ccccH---HHHHHHHHHHHHhCCeEEeh
Confidence 45666 89999999999999987764
No 329
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=23.56 E-value=2.4e+02 Score=25.15 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=43.3
Q ss_pred ccChHHHHHHHHHcCCCEEEecccccccccCCCC-------CCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch
Q 046612 15 YHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKI-------SGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ 85 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~-------~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~ 85 (223)
...+.++++.+.++|++.+.+.. +.|.+.. .-.-+.+..+.|+.+.+.|.++|.... .+.+|..|.
T Consensus 166 ~~~~~~~l~~~~~l~~~~is~y~----l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y-ei~~fa~~~ 238 (360)
T TIGR00539 166 LNSLKEELKLAKELPINHLSAYA----LSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILEGFGFKQY-EVSNYAKAG 238 (360)
T ss_pred HHHHHHHHHHHHccCCCEEEeec----ceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHHHcCCcee-ehhhhcCCC
Confidence 34578899999999998766543 3333200 011234567889999999999998754 566666553
No 330
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=23.38 E-value=4e+02 Score=24.28 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=56.5
Q ss_pred ccChHHHHHHHHHcCCCEEE------ecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhh
Q 046612 15 YHHYKEDIKLMKKVGLDSFR------FSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALE 88 (223)
Q Consensus 15 y~~~~eDi~l~~~lG~~~~R------~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~ 88 (223)
.-.++|.++.||++|++++= ++-.=.++.. + .+.+. +..-++++.+.+.||.-.-|+-
T Consensus 157 ~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~-p---~K~~~---~~wle~~~~Ah~lGI~~tatml--------- 220 (370)
T COG1060 157 GLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC-P---PKKSP---EEWLEIHERAHRLGIPTTATML--------- 220 (370)
T ss_pred CCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhC-C---CCCCH---HHHHHHHHHHHHcCCCccceeE---------
Confidence 34578889999999999863 2222333333 3 56666 5668999999999999887763
Q ss_pred hhhCCCCChHhHHHHHHHHHHHHHHhCC
Q 046612 89 EEYGGFLSPKIVKDFVDYGDFCFKTYGD 116 (223)
Q Consensus 89 ~~~gg~~~~~~~~~f~~y~~~~~~~~~~ 116 (223)
||+-.+++-+-.-..=.+.+-++||.
T Consensus 221 --~Gh~E~~ed~~~hl~~ir~lQ~~~gg 246 (370)
T COG1060 221 --LGHVETREDRIDHLEHIRDLQDETGG 246 (370)
T ss_pred --EEecCCHHHHHHHHHHHHHHHHHhCC
Confidence 35555544333334445677788987
No 331
>PTZ00066 pyruvate kinase; Provisional
Probab=23.36 E-value=1.1e+02 Score=29.18 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.7
Q ss_pred hHHHHHHHHHcCCCEEEecccc
Q 046612 18 YKEDIKLMKKVGLDSFRFSISW 39 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W 39 (223)
-+|-++.|-+.|+|.+|+.++.
T Consensus 52 ~~e~l~~mi~aGm~v~RlN~SH 73 (513)
T PTZ00066 52 NVETLVKLIDAGMNICRFNFSH 73 (513)
T ss_pred CHHHHHHHHHcCCCEEEEECCC
Confidence 3578899999999999999987
No 332
>PRK14566 triosephosphate isomerase; Provisional
Probab=23.36 E-value=2.5e+02 Score=24.31 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=37.4
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++.+=++-|=.|..= ++-| +...+-+..+.++||+|++++-
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f-----~Etd----~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVIIGHSERRRMY-----GETS----NIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEECcccccCCC-----CcCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 58899999999998887665432 2222 3456788899999999999984
No 333
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=23.27 E-value=1.3e+02 Score=27.43 Aligned_cols=83 Identities=13% Similarity=0.217 Sum_probs=51.9
Q ss_pred CcccCCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCC---------C-hhHHHHHHHHHHHHHhCCCeeEEe
Q 046612 8 GDIASGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGV---------N-PLGVKFYKDLINELLANDIKPFVT 77 (223)
Q Consensus 8 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~---------n-~~~l~~y~~~i~~l~~~gi~p~vt 77 (223)
+=+|.=||+ |+--+.-++. +..+|+. | |.+ + . +....+++.++++||..=+.
T Consensus 76 PlVADIHFd-~~lAl~a~~~--v~kiRIN---------P---GNi~~~~~~~~g~~~---~~~~~vv~~ake~~ipIRIG 137 (359)
T PF04551_consen 76 PLVADIHFD-YRLALEAIEA--VDKIRIN---------P---GNIVDEFQEELGSIR---EKVKEVVEAAKERGIPIRIG 137 (359)
T ss_dssp -EEEEESTT-CHHHHHHHHC---SEEEE----------T---TTSS----SS-SS-H---HHHHHHHHHHHHHT-EEEEE
T ss_pred CeeeecCCC-HHHHHHHHHH--hCeEEEC---------C---CcccccccccccchH---HHHHHHHHHHHHCCCCEEEe
Confidence 334555664 5655555554 8888874 2 555 2 3 56799999999999999999
Q ss_pred cCCCCCchhhhhhhCCCCChHhHHHHHHHHHH
Q 046612 78 LLHFDPPQALEEEYGGFLSPKIVKDFVDYGDF 109 (223)
Q Consensus 78 L~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~ 109 (223)
.+|-.++.-+..+| |-+....++--.++++.
T Consensus 138 vN~GSL~~~~~~ky-~~t~~amvesA~~~~~~ 168 (359)
T PF04551_consen 138 VNSGSLEKDILEKY-GPTPEAMVESALEHVRI 168 (359)
T ss_dssp EEGGGS-HHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred cccccCcHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 99999999888777 22222234444444443
No 334
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=23.21 E-value=3.7e+02 Score=21.33 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=31.7
Q ss_pred HHHHHHHHHhC--CCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhC
Q 046612 60 YKDLINELLAN--DIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 60 y~~~i~~l~~~--gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~ 115 (223)
....+..++++ |+++++.+--++...... --.+++..+.|++-...++++++
T Consensus 51 ~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~----~~~~~~~~~~f~~~~~~~v~~~~ 104 (210)
T cd00598 51 LKGALEELASKKPGLKVLISIGGWTDSSPFT----LASDPASRAAFANSLVSFLKTYG 104 (210)
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCCCCCCCch----hhcCHHHHHHHHHHHHHHHHHcC
Confidence 34667788887 999999996544322110 01345556667666666666664
No 335
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=23.04 E-value=1.7e+02 Score=29.54 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=42.2
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCC--C----CCCCCh--hHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGK--I----SGGVNP--LGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~--~----~g~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-++-++.+++||++++=.|--|.-. |..+ + ..++|+ -|.+-+.+++.+++++||-.|+++.
T Consensus 21 A~~~l~yl~~LGIShLY~SPIftA~-pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIV 89 (889)
T COG3280 21 ARALLDYLADLGISHLYLSPIFTAR-PGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIV 89 (889)
T ss_pred HHHhhHHHHhcCchheeccchhhcC-CCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEec
Confidence 3456788999999999988666433 1110 0 012332 2456679999999999999999984
No 336
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.02 E-value=2.6e+02 Score=26.46 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=45.2
Q ss_pred cCCcccChHHHHHHHHHcCCCEEEeccc------ccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCe-eEEecCCCCC
Q 046612 11 ASGFYHHYKEDIKLMKKVGLDSFRFSIS------WTRILPKGKISGGVNPLGVKFYKDLINELLANDIK-PFVTLLHFDP 83 (223)
Q Consensus 11 a~d~y~~~~eDi~l~~~lG~~~~R~si~------W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~h~~~ 83 (223)
...-...-.++++.||++|++.|-+..+ ..++.|.+ -+=|+ ++=-+.++.+.+.||. +=.... +++
T Consensus 172 ~inig~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g---~k~~y---~~Rl~t~~rA~~aGi~~Vg~G~L-~GL 244 (469)
T PRK09613 172 NVNIAPTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSG---PKSDY---DWRLTAMDRAMEAGIDDVGIGVL-FGL 244 (469)
T ss_pred EEEeecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCC---CCCCH---HHHHHHHHHHHHcCCCeeCeEEE-EcC
Confidence 3344557789999999999998766552 46777764 12233 4446678888999997 433332 455
Q ss_pred chh
Q 046612 84 PQA 86 (223)
Q Consensus 84 P~~ 86 (223)
|.|
T Consensus 245 ge~ 247 (469)
T PRK09613 245 YDY 247 (469)
T ss_pred CCC
Confidence 544
No 337
>PRK15492 triosephosphate isomerase; Provisional
Probab=22.98 E-value=2.7e+02 Score=24.11 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=36.3
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++.+=++-|=.|..= ++-| +...+-+..+.++||+|++++-
T Consensus 87 a~mLkd~G~~~viiGHSERR~~f-----~Etd----~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMIGHSERRHKF-----GETD----QEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEECcccccccc-----Ccch----HHHHHHHHHHHHCCCEEEEEcC
Confidence 57889999988888887655421 2222 3456678899999999999984
No 338
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.90 E-value=5.5e+02 Score=22.88 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=72.5
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCch---------hhhhhhCC-----CCC---hHhHHHHHHHHHHHHH
Q 046612 50 GGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQ---------ALEEEYGG-----FLS---PKIVKDFVDYGDFCFK 112 (223)
Q Consensus 50 g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~---------~l~~~~gg-----~~~---~~~~~~f~~y~~~~~~ 112 (223)
+-++.+.+..++++++.+.++|-+.++=|.|.+.-. -......+ .+. .++++.|++=|+.+.+
T Consensus 69 ~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~ 148 (353)
T cd02930 69 VLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALARE 148 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999964311 00000001 111 2467777777766544
Q ss_pred HhCCCcccEEeecCCcccccccccCCCC-CCC---CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 046612 113 TYGDRVKLWASMNEPNGMVMNGYNGGSF-APG---RCSNYVGNCTAGDSATEPYIAAHNMLLSHGALVNLYKHKYQPYQM 188 (223)
Q Consensus 113 ~~~~~v~~w~t~NEp~~~~~~~y~~g~~-~pg---~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~a~~~~k~~~~~~~~ 188 (223)
.==|-|. +..-.||+...| .|. +.+. + +- .+-|-..--...++.+|+.. .++
T Consensus 149 aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~-y-----GG-------slenR~r~~~eiv~aIR~~v--G~d 204 (353)
T cd02930 149 AGYDGVE---------IMGSEGYLINQFLAPRTNKRTDE-W-----GG-------SFENRMRFPVEIVRAVRAAV--GED 204 (353)
T ss_pred cCCCEEE---------EecccchHHHHhcCCccCCCcCc-c-----CC-------CHHHHhHHHHHHHHHHHHHc--CCC
Confidence 3213343 234456765533 232 2221 1 11 12233333456667777754 356
Q ss_pred CeEEEeecCceee
Q 046612 189 GKIGITILTHWFE 201 (223)
Q Consensus 189 ~kvGi~~~~~~~~ 201 (223)
..||+-++...+.
T Consensus 205 ~~v~iRi~~~D~~ 217 (353)
T cd02930 205 FIIIYRLSMLDLV 217 (353)
T ss_pred ceEEEEecccccC
Confidence 6788888765443
No 339
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=22.89 E-value=3.6e+02 Score=28.60 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=18.6
Q ss_pred cccChHHHH-----HHHHHcCCCEEEec
Q 046612 14 FYHHYKEDI-----KLMKKVGLDSFRFS 36 (223)
Q Consensus 14 ~y~~~~eDi-----~l~~~lG~~~~R~s 36 (223)
.|..|++|+ +..++-|++.+|+-
T Consensus 618 gy~~ypd~vv~~f~~~~~~~Gidifrif 645 (1143)
T TIGR01235 618 GYTNYPDNVVKYFVKQAAQGGIDIFRVF 645 (1143)
T ss_pred CccCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 478888884 67789999999974
No 340
>PRK09989 hypothetical protein; Provisional
Probab=22.87 E-value=1.7e+02 Score=24.48 Aligned_cols=56 Identities=5% Similarity=0.067 Sum_probs=34.9
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEE
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFV 76 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 76 (223)
.++=++..+++|.+.+++...|. |.+..........++.++++.+.+.+.|+...+
T Consensus 87 l~~~i~~A~~lg~~~v~v~~g~~---~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 142 (258)
T PRK09989 87 IDLALEYALALNCEQVHVMAGVV---PAGEDAERYRAVFIDNLRYAADRFAPHGKRILV 142 (258)
T ss_pred HHHHHHHHHHhCcCEEEECccCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 34446667999999998765442 221000111123456778888888999998766
No 341
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=22.78 E-value=1.9e+02 Score=25.33 Aligned_cols=63 Identities=25% Similarity=0.291 Sum_probs=44.8
Q ss_pred HHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCC
Q 046612 23 KLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 23 ~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg 93 (223)
+..|+.|-.-|=++-.|..+.-.. .+.....++|.+.+.-||++-+||--.+--+..+-+-.|
T Consensus 127 k~AK~~GSTRFCmGaAWRD~~GRk--------~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAG 189 (380)
T KOG2900|consen 127 KEAKRNGSTRFCMGAAWRDMKGRK--------SAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAG 189 (380)
T ss_pred HHHHhcCCceeecchhhhhhccch--------hHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhcc
Confidence 455778888888888998774332 344677999999999999999999755544444433234
No 342
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=22.77 E-value=3.1e+02 Score=24.54 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.0
Q ss_pred hHHHHHHHHHcCCCEEEec-----ccccccccCCCCCCCCCh
Q 046612 18 YKEDIKLMKKVGLDSFRFS-----ISWTRILPKGKISGGVNP 54 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~s-----i~W~ri~P~~~~~g~~n~ 54 (223)
-.++.+.+.+.|++.++.| ++|.|++ .+ .|..++
T Consensus 147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~-~g--~g~~~~ 185 (321)
T TIGR01306 147 TPEAVRELENAGADATKVGIGPGKVCITKIK-TG--FGTGGW 185 (321)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccceee-ec--cCCCch
Confidence 4688999999999999998 6899997 44 255444
No 343
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=22.69 E-value=2.9e+02 Score=24.90 Aligned_cols=98 Identities=11% Similarity=0.078 Sum_probs=53.8
Q ss_pred cChHHHHHHHHHcCCCEEEeccc-c-cccccCCCCCC-CCChhHHHHHHHHHHHHHhCCCee-EEecCCCCCchhhhhhh
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSIS-W-TRILPKGKISG-GVNPLGVKFYKDLINELLANDIKP-FVTLLHFDPPQALEEEY 91 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~~~g-~~n~~~l~~y~~~i~~l~~~gi~p-~vtL~h~~~P~~l~~~~ 91 (223)
..-.++++.++++|++.+.++++ = ...++.-...| .=+. +.--+.++.+++.||+. -+.+. +++|.|..+
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~---~~rl~~i~~a~~aG~~~v~~g~i-~Gl~e~~~d-- 232 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDF---RYRLNTPERAAKAGMRKIGIGAL-LGLDDWRTD-- 232 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCH---HHHHHHHHHHHHcCCCeeceeEE-EeCchhHHH--
Confidence 46789999999999998888773 2 23333210001 1122 33466788899999983 33332 445533221
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCc
Q 046612 92 GGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 92 gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
.-..+.-.+.+-.+|.+ ....+.+|+-.
T Consensus 233 --------~~~~a~~l~~L~~~~~~-~~~sv~~~~l~ 260 (366)
T TIGR02351 233 --------AFFTAYHLRYLQKKYWK-TEISISVPRLR 260 (366)
T ss_pred --------HHHHHHHHHHHHHHcCC-CCccccccccc
Confidence 22233344445455543 33346677744
No 344
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.65 E-value=3.7e+02 Score=23.16 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=44.3
Q ss_pred CCcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 12 SGFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 12 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
.+......+-.+.++++|++.+|=+.-=+|--|...+ | + |++-++.+.+.+++.||..+-+.++
T Consensus 25 vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~-G-~---G~~gl~~L~~~~~~~Gl~~~Tev~d 88 (250)
T PRK13397 25 IESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQ-G-L---GLQGIRYLHEVCQEFGLLSVSEIMS 88 (250)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccC-C-C---CHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 3444445555566899999999988633565554331 2 2 3345688888899999999999875
No 345
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=22.60 E-value=3.5e+02 Score=23.39 Aligned_cols=57 Identities=7% Similarity=0.102 Sum_probs=41.0
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCC--CCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISG--GVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g--~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
.++.++.+++.|.+.+++-+++.-.-|... .+ .++. +.+..+++.++++|+.+.+-.
T Consensus 122 ~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~-~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 122 VRAAVREQLRRGADQIKIMATGGVLSPGDP-PPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCcCCCCCC-CcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 356788889999999999887754444321 11 4555 556899999999999877644
No 346
>PLN02561 triosephosphate isomerase
Probab=22.57 E-value=3.1e+02 Score=23.66 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++.+=++-|=.|..= |+-| +...+-+..+.++||+|++++-
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f-----~Etd----~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALL-----GESN----EFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEECcccccCcc-----CCCh----HHHHHHHHHHHHCcCEEEEEcC
Confidence 57888888888888877555422 2223 3457778899999999999984
No 347
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=22.52 E-value=1.6e+02 Score=25.86 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=46.9
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
+.+.+|+.|-+++.|=+-|.- ++ .++|+.-+++.+++...|.+.+|--++-...++
T Consensus 116 sa~riK~~G~~avK~Lvy~~~---D~---~e~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRS---DE---DEINEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred CHHHHHHhcccceEEEEEEcC---Cc---hHHhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 457899999999999999953 22 368999999999999999999998888776554
No 348
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=22.49 E-value=3.8e+02 Score=22.53 Aligned_cols=57 Identities=16% Similarity=0.044 Sum_probs=37.7
Q ss_pred HHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 21 DIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 21 Di~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
-+..+.+-|++.+-+|+......+.. ........+.+++.|+.+.++||-+++.--.
T Consensus 98 ai~~a~~~~~~vin~S~G~~~~~~~~---~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN 154 (294)
T cd07482 98 AIIDAADDGVDVINLSLGGYLIIGGE---YEDDDVEYNAYKKAINYAKSKGSIVVAAAGN 154 (294)
T ss_pred HHHHHHHCCCCEEEeCCccCCCCCcc---cccchhhhHHHHHHHHHHHHCCCEEEEeCCC
Confidence 45666778888876665543332221 2223455677899999999999988886654
No 349
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=22.42 E-value=2.6e+02 Score=23.94 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHhCCCeeEEecCC
Q 046612 54 PLGVKFYKDLINELLANDIKPFVTLLH 80 (223)
Q Consensus 54 ~~~l~~y~~~i~~l~~~gi~p~vtL~h 80 (223)
.+-++++++.++.++++|.+++|..||
T Consensus 196 ~~Ql~WL~~~L~~a~~~~~~v~I~~Hi 222 (296)
T cd00842 196 AGQLQWLEDELQEAEQAGEKVWIIGHI 222 (296)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 567999999999999999999887765
No 350
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=22.31 E-value=1.7e+02 Score=25.63 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=28.1
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCeeEEecCCC
Q 046612 50 GGVNPLGVKFYKDLINELLANDIKPFVTLLHF 81 (223)
Q Consensus 50 g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~ 81 (223)
..+|..+.....++|..+++.|++++++-|+.
T Consensus 167 ~gLD~~~~~~l~~~l~~l~~~g~till~sH~l 198 (306)
T PRK13537 167 TGLDPQARHLMWERLRSLLARGKTILLTTHFM 198 (306)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 56889998999999999998999999999863
No 351
>PLN02762 pyruvate kinase complex alpha subunit
Probab=22.27 E-value=1.5e+02 Score=28.29 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCEEEecccc
Q 046612 19 KEDIKLMKKVGLDSFRFSISW 39 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W 39 (223)
+|-+..|-+.|++.+|+.+|+
T Consensus 40 ~e~l~~li~aGm~v~RlNfSH 60 (509)
T PLN02762 40 FEQLEALAMGGMNVARLNMCH 60 (509)
T ss_pred HHHHHHHHHCCCCEEEEECCC
Confidence 577899999999999999998
No 352
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=22.25 E-value=4.4e+02 Score=22.75 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=46.2
Q ss_pred CCCCChhHHHHHHHHHHHHHh-CCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCC
Q 046612 49 SGGVNPLGVKFYKDLINELLA-NDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEP 127 (223)
Q Consensus 49 ~g~~n~~~l~~y~~~i~~l~~-~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp 127 (223)
+|.+|.+++ +++++.+.+ .|+.-++.+-+- |-+. .-+.+...+..+.+++.-++++....-...+
T Consensus 18 dg~iD~~~~---~~li~~l~~~~Gv~gi~v~Gst----------GE~~-~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~ 83 (293)
T PRK04147 18 DGQIDEQGL---RRLVRFNIEKQGIDGLYVGGST----------GEAF-LLSTEEKKQVLEIVAEEAKGKVKLIAQVGSV 83 (293)
T ss_pred CCCcCHHHH---HHHHHHHHhcCCCCEEEECCCc----------cccc-cCCHHHHHHHHHHHHHHhCCCCCEEecCCCC
Confidence 589999665 999999999 999998876431 1111 1234667777788888877887766655554
Q ss_pred c
Q 046612 128 N 128 (223)
Q Consensus 128 ~ 128 (223)
+
T Consensus 84 ~ 84 (293)
T PRK04147 84 N 84 (293)
T ss_pred C
Confidence 4
No 353
>PHA02769 hypothetical protein; Provisional
Probab=22.24 E-value=1.5e+02 Score=22.63 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhh
Q 046612 57 VKFYKDLINELLANDIKPFVTLLHFDPPQALEEE 90 (223)
Q Consensus 57 l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~ 90 (223)
+.+...+-+.+++-|++++.||--=|....|..+
T Consensus 98 vnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~k 131 (154)
T PHA02769 98 VNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKK 131 (154)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhh
Confidence 5667778888999999999999644444444444
No 354
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=21.89 E-value=1.7e+02 Score=26.23 Aligned_cols=55 Identities=29% Similarity=0.665 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCEEEecccccccccCCC-----CCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 20 EDIKLMKKVGLDSFRFSISWTRILPKGK-----ISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 20 eDi~l~~~lG~~~~R~si~W~ri~P~~~-----~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
.++..+.++|+.+ +++-|+|=-.-+. ..+-+...| ++++++|.+.|| |++|.|-+
T Consensus 112 ~~L~~~~~~GvR~--lgltwn~~N~~g~g~~~~~~~GLs~~G----k~lV~~~N~LgI--iiDlSH~s 171 (313)
T COG2355 112 DKLELFHALGVRS--LGLTWNRDNLFGDGCYERTGGGLTPFG----KELVREMNELGI--IIDLSHLS 171 (313)
T ss_pred HHHHHHHHhCceE--EEeeeccCCcccCccCCCCCCCCCHHH----HHHHHHHHhcCC--EEEecccC
Confidence 4567889999777 4667777544331 012344444 789999999986 67777743
No 355
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=21.83 E-value=4.3e+02 Score=22.79 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=40.7
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEee
Q 046612 49 SGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASM 124 (223)
Q Consensus 49 ~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~ 124 (223)
+|++|.++ ++++++.+.+.|+.-++.+-+- |-+. .-+.+...+.++.+.+.-++++....-.
T Consensus 15 dg~iD~~~---l~~l~~~l~~~Gv~gi~v~Gst----------GE~~-~Ls~eEr~~l~~~~~~~~~~~~pvi~gv 76 (289)
T cd00951 15 DGSFDEDA---YRAHVEWLLSYGAAALFAAGGT----------GEFF-SLTPDEYAQVVRAAVEETAGRVPVLAGA 76 (289)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECcCC----------cCcc-cCCHHHHHHHHHHHHHHhCCCCCEEEec
Confidence 48999966 5999999999999998876431 1111 1134455666666666666666655533
No 356
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=21.79 E-value=3.4e+02 Score=25.19 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=46.5
Q ss_pred cccChHHHHHHHHHcCCCEEEecc----ccc----ccccCCCCCCCCC-hhHHHHHHHHHHHHHhCCCeeEEecCCCCCc
Q 046612 14 FYHHYKEDIKLMKKVGLDSFRFSI----SWT----RILPKGKISGGVN-PLGVKFYKDLINELLANDIKPFVTLLHFDPP 84 (223)
Q Consensus 14 ~y~~~~eDi~l~~~lG~~~~R~si----~W~----ri~P~~~~~g~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P 84 (223)
....++++++.+.++|++.+.+.. .|. +..+.. ..++ .+..+.|..+.+.|.++|..+. .+.||..|
T Consensus 216 t~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~Gy~~y-e~s~far~ 291 (453)
T PRK09249 216 TPESFARTLEKVLELRPDRLAVFNYAHVPWLFKAQRKIDEA---DLPSPEEKLAILQQTIETLTEAGYQYI-GMDHFALP 291 (453)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEccCccchhhhhHhcCCCcc---cCCCHHHHHHHHHHHHHHHHHCCCEEE-eccceeCC
Confidence 344588999999999999887653 232 111111 1223 3556789999999999999884 67777766
Q ss_pred h
Q 046612 85 Q 85 (223)
Q Consensus 85 ~ 85 (223)
.
T Consensus 292 ~ 292 (453)
T PRK09249 292 D 292 (453)
T ss_pred C
Confidence 3
No 357
>PRK05826 pyruvate kinase; Provisional
Probab=21.78 E-value=1.6e+02 Score=27.75 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCCEEEeccccc
Q 046612 19 KEDIKLMKKVGLDSFRFSISWT 40 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~W~ 40 (223)
.|.+..|-+.|++.+|+.+++.
T Consensus 19 ~e~l~~li~~G~~v~RiN~sHg 40 (465)
T PRK05826 19 PENLEKLIEAGVNVVRLNFSHG 40 (465)
T ss_pred HHHHHHHHHcCCCEEEEEcCCC
Confidence 5889999999999999999883
No 358
>PTZ00333 triosephosphate isomerase; Provisional
Probab=21.67 E-value=3.2e+02 Score=23.50 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=36.5
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++.+=++-|=.|..=. +=| +...+-+..+.++||.|++++-
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f~-----Etd----~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYFG-----ETN----EIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcCC-----CCc----HHHHHHHHHHHHCCCEEEEEcC
Confidence 478899999998888875554221 112 3457788899999999999984
No 359
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.59 E-value=3.8e+02 Score=22.72 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=55.4
Q ss_pred hHHHHHHHHHcCC--CEEEecccccccccCCCCCC--CCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCC
Q 046612 18 YKEDIKLMKKVGL--DSFRFSISWTRILPKGKISG--GVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGG 93 (223)
Q Consensus 18 ~~eDi~l~~~lG~--~~~R~si~W~ri~P~~~~~g--~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg 93 (223)
..+-++.+++.|+ +++=+++.|..-.-. - .+|.+...--+++|+.|+++|++.++.++ |.
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~----f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~-------- 89 (265)
T cd06589 26 VLEVIDGMRENDIPLDGFVLDDDYTDGYGD----FTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PY-------- 89 (265)
T ss_pred HHHHHHHHHHcCCCccEEEECcccccCCce----eeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hh--------
Confidence 3445666777554 577777777643211 2 45554444558999999999999998763 31
Q ss_pred CCChHhHHHHHHHHHHHHHHhCCCcc-cEEeecCCccc
Q 046612 94 FLSPKIVKDFVDYGDFCFKTYGDRVK-LWASMNEPNGM 130 (223)
Q Consensus 94 ~~~~~~~~~f~~y~~~~~~~~~~~v~-~w~t~NEp~~~ 130 (223)
+.+.|.+..+.+. +...|+ +|+=+|||...
T Consensus 90 -----v~~w~~~~~~~~~--~~~Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 90 -----IREWWAEVVKKLL--VSLGVDGFWTDMGEPSPG 120 (265)
T ss_pred -----HHHHHHHHHHHhh--ccCCCCEEeccCCCCCcC
Confidence 1445555444432 222344 47889999754
No 360
>PRK14567 triosephosphate isomerase; Provisional
Probab=21.49 E-value=3e+02 Score=23.74 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=36.0
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+++++|++.+=++-|=.|..= ++-| +...+-+..+.++||+|++++-
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f-----~Etd----~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLF-----AESD----EDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEECcccccCcc-----CCCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 57889999998888887555422 2222 3456778889999999999984
No 361
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=21.45 E-value=3.1e+02 Score=21.78 Aligned_cols=82 Identities=9% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCEEEeccc-ccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCC-ch----hhhhhhC
Q 046612 19 KEDIKLMKKVGLDSFRFSIS-WTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDP-PQ----ALEEEYG 92 (223)
Q Consensus 19 ~eDi~l~~~lG~~~~R~si~-W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~-P~----~l~~~~g 92 (223)
+++.+.+++.|++.+++.++ +.. |. .....+ ...+.++.+.+..=.|++--++-+- =. .+-.+..
T Consensus 46 ~~~~~f~~~~~I~l~~~~~~~~~~--~~----~~~~~~---~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q 116 (164)
T PF03162_consen 46 QDFLEFAEENGIKLIHIPMSSSKD--PW----VPISEE---QVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQ 116 (164)
T ss_dssp HHHHHHHHHTT-EEEE-------G--GG--------HH---HHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCceEEEeccccccC--cc----ccCCHH---HHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHc
Confidence 34455678888888888874 221 11 233443 3356666555444456654432221 11 1223568
Q ss_pred CCCChHhHHHHHHHHHH
Q 046612 93 GFLSPKIVKDFVDYGDF 109 (223)
Q Consensus 93 g~~~~~~~~~f~~y~~~ 109 (223)
||....+.++|.+|+..
T Consensus 117 ~W~~~~i~~Ey~~f~~~ 133 (164)
T PF03162_consen 117 GWSLSSIFDEYRRFAGP 133 (164)
T ss_dssp TB-HHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHhcCC
Confidence 99988899999999854
No 362
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=21.42 E-value=3.6e+02 Score=20.74 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhC
Q 046612 59 FYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYG 115 (223)
Q Consensus 59 ~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~ 115 (223)
..+.+.+-+.+.++.-+| .++|.-. .|..++ ....-.+|++.+.++|+
T Consensus 42 ~~~~l~~~i~~~~i~~iV----vGlP~~~----~G~~~~-~~~~v~~f~~~L~~~~~ 89 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLV----VGLPLNM----DGTEGP-RTERARKFANRLEGRFG 89 (138)
T ss_pred HHHHHHHHHHHhCCCEEE----EeccCCC----CCCcCH-HHHHHHHHHHHHHHHhC
Confidence 457778888888887666 4668542 465554 35566788888888884
No 363
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.31 E-value=81 Score=25.54 Aligned_cols=68 Identities=19% Similarity=0.391 Sum_probs=41.1
Q ss_pred EEecccccccccCCCCCCC-----CChhHHHHHHHHHHHHHh-CCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHH
Q 046612 33 FRFSISWTRILPKGKISGG-----VNPLGVKFYKDLINELLA-NDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVD 105 (223)
Q Consensus 33 ~R~si~W~ri~P~~~~~g~-----~n~~~l~~y~~~i~~l~~-~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~ 105 (223)
=|+.+||..=-.... .|. +|++|..-|++..+.=.+ ..++|+.|+. .++|.-. + |-|.+.|++..+..
T Consensus 78 nkYQVSW~~e~k~a~-sG~y~V~~fDEegyaalrKA~R~ged~~~vkplftV~-v~h~Ga~--~-gpwV~sE~lA~~~~ 151 (167)
T PF05404_consen 78 NKYQVSWTEEHKKAS-SGTYEVKFFDEEGYAALRKAQRNGEDVSSVKPLFTVT-VNHPGAY--K-GPWVNSEFLAALLA 151 (167)
T ss_pred CceEEEEEechhhcc-CCceEEEEeChHHHHHHHHHhhcCCCcccCCccEEEE-EecCccc--c-CCCchHHHHHHHHH
Confidence 356788865433321 254 589887777665544333 6789988764 3445432 1 67999887765543
No 364
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.24 E-value=2.7e+02 Score=22.72 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
-|+-+.+.++..|++.+=+.++=.-|.-+. ....+ ...+.+++++++||+.+|.-+
T Consensus 15 v~~i~~~~L~~~Gikgvi~DlDNTLv~wd~---~~~tp----e~~~W~~e~k~~gi~v~vvSN 70 (175)
T COG2179 15 VFDITPDILKAHGIKGVILDLDNTLVPWDN---PDATP----ELRAWLAELKEAGIKVVVVSN 70 (175)
T ss_pred HhhCCHHHHHHcCCcEEEEeccCceecccC---CCCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence 355678899999999999987644332221 22233 347788899999999998654
No 365
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.17 E-value=4.5e+02 Score=22.74 Aligned_cols=63 Identities=14% Similarity=0.294 Sum_probs=43.1
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeec
Q 046612 49 SGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMN 125 (223)
Q Consensus 49 ~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~N 125 (223)
+|.+|.++ ++++++.+.+.|+.-++.+-+- |-+. .-+.+...+..+.+.+.-++++....-..
T Consensus 20 dg~iD~~~---l~~li~~l~~~Gv~gi~v~Gst----------GE~~-~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~ 82 (296)
T TIGR03249 20 DGSFDEAA---YRENIEWLLGYGLEALFAAGGT----------GEFF-SLTPAEYEQVVEIAVSTAKGKVPVYTGVG 82 (296)
T ss_pred CCCcCHHH---HHHHHHHHHhcCCCEEEECCCC----------cCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 58999966 5999999999999998866431 1111 12345666777777777777776665444
No 366
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=20.96 E-value=2e+02 Score=27.59 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=45.7
Q ss_pred CcccChHHHHHHHHHcCCCEEEecccccccccCCCCCCC-------CC--hhHHHHHHHHHHHHHhCCCeeEEecC
Q 046612 13 GFYHHYKEDIKLMKKVGLDSFRFSISWTRILPKGKISGG-------VN--PLGVKFYKDLINELLANDIKPFVTLL 79 (223)
Q Consensus 13 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~-------~n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 79 (223)
..+.--.+=++.++++|++++=+|=-=.-+++.- |. +| +--.+-+.++|+.+.+.||..|+++.
T Consensus 37 G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~---GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 37 GDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDF---GYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred cccccchhhhhHHHhcCCceEEeCCCcCCCHHHh---ccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 3455556668999999999988876555555521 21 12 23356679999999999999999864
No 367
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=20.87 E-value=1.7e+02 Score=23.93 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHhCCCc
Q 046612 99 IVKDFVDYGDFCFKTYGDRV 118 (223)
Q Consensus 99 ~~~~f~~y~~~~~~~~~~~v 118 (223)
.+..|-++++.++-+++|.+
T Consensus 138 ~~k~~lk~~E~~avk~ad~l 157 (185)
T PF09314_consen 138 PAKKYLKFSEKLAVKYADRL 157 (185)
T ss_pred HHHHHHHHHHHHHHHhCCEE
Confidence 57899999999999999863
No 368
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=20.84 E-value=89 Score=27.34 Aligned_cols=30 Identities=27% Similarity=0.603 Sum_probs=25.5
Q ss_pred cChHHHHHHHHHcCCCEEEecccccccccCC
Q 046612 16 HHYKEDIKLMKKVGLDSFRFSISWTRILPKG 46 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~~ 46 (223)
...++|+++++++|++.+ |.-+-+.+.|++
T Consensus 73 ~t~e~d~~ll~~~GvD~v-F~p~~~~m~p~~ 102 (277)
T cd00560 73 RTLEADLALLEEAGVDLL-FAPSVEEMYPEG 102 (277)
T ss_pred CCHHHHHHHHHHCCCCEE-ECCCHHHcCCCC
Confidence 347999999999999999 777778888865
No 369
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.81 E-value=2.1e+02 Score=19.58 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 53 NPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 53 n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
|.+.......+.+.|+++|+.+.+++
T Consensus 13 ~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 13 DEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred cHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 56777888999999999999999876
No 370
>PLN02417 dihydrodipicolinate synthase
Probab=20.74 E-value=5.4e+02 Score=22.06 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=48.1
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhhhhCCCCChHhHHHHHHHHHHHHHHhCCCcccEEeecCCc
Q 046612 49 SGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEEEYGGFLSPKIVKDFVDYGDFCFKTYGDRVKLWASMNEPN 128 (223)
Q Consensus 49 ~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~~~gg~~~~~~~~~f~~y~~~~~~~~~~~v~~w~t~NEp~ 128 (223)
+|.+|+++ ++++++.+.+.|+.-++.+-+- |-+. .-+.+...+..+.+.+.-+++++...-...++
T Consensus 16 ~g~iD~~~---~~~~i~~l~~~Gv~Gi~~~Gst----------GE~~-~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~ 81 (280)
T PLN02417 16 DGRFDLEA---YDSLVNMQIENGAEGLIVGGTT----------GEGQ-LMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNS 81 (280)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECccC----------cchh-hCCHHHHHHHHHHHHHHhCCCCcEEEECCCcc
Confidence 58999955 5999999999999999876431 1111 12356667777777888888888777776665
Q ss_pred c
Q 046612 129 G 129 (223)
Q Consensus 129 ~ 129 (223)
.
T Consensus 82 t 82 (280)
T PLN02417 82 T 82 (280)
T ss_pred H
Confidence 4
No 371
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=20.73 E-value=4.3e+02 Score=20.87 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=46.5
Q ss_pred cChHHHHHHHHHcCCC----EEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCC
Q 046612 16 HHYKEDIKLMKKVGLD----SFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFD 82 (223)
Q Consensus 16 ~~~~eDi~l~~~lG~~----~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~ 82 (223)
..+++.++.|+..|+. .+.+++.=+-.|..+ .-.++.++....+++.+.|++.+...+...-|-|
T Consensus 25 ~~~~~~~~~~~~~g~~~~~~~~~i~l~~~v~F~~~--sa~L~~~~~~~L~~ia~~l~~~~~~~v~I~GhTD 93 (160)
T PRK09967 25 KFTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKN--DYKLLPESQQQIQTMAAKLASTGLTHARMDGHTD 93 (160)
T ss_pred CCCHHHHHHHHhcCceecCCceEEEcCCceeeCCC--ccccCHHHHHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 4579999999999986 344555544445555 3688999999999999999998754444444433
No 372
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=20.58 E-value=6.5e+02 Score=22.87 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=33.7
Q ss_pred hHHHHHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEecCCCCCchhhhh
Q 046612 18 YKEDIKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTLLHFDPPQALEE 89 (223)
Q Consensus 18 ~~eDi~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~~~P~~l~~ 89 (223)
.-+.+..+.++|...+|+++ |+ .++.+- +..+++.-=-|+|.=.|||++..+..
T Consensus 36 tv~QI~~L~~aGceiVRvav------p~--------~~~A~a----l~~I~~~~~iPlVADIHFd~~lAl~a 89 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVRVTV------PD--------RESAAA----FEAIKEGTNVPLVADIHFDYRLAALA 89 (346)
T ss_pred HHHHHHHHHHcCCCEEEEcC------CC--------HHHHHh----HHHHHhCCCCCEEEeeCCCcHHHHHH
Confidence 34567889999999999986 22 233222 22333332246666568999887643
No 373
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.51 E-value=1.7e+02 Score=24.84 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=29.1
Q ss_pred HHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 24 LMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 24 l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
+++++|++.. ++.. | + .++.. +...++++.++++|++.++.=
T Consensus 183 ~~~~ygl~~~--~~~~----~-~---~eps~---~~l~~l~~~ik~~~v~~if~e 224 (266)
T cd01018 183 FARDYGLTQI--PIEE----E-G---KEPSP---ADLKRLIDLAKEKGVRVVFVQ 224 (266)
T ss_pred HHHHcCCEEE--ecCC----C-C---CCCCH---HHHHHHHHHHHHcCCCEEEEc
Confidence 4577888875 3321 2 2 45555 566999999999999988643
No 374
>PLN02389 biotin synthase
Probab=20.48 E-value=3.1e+02 Score=25.04 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=33.0
Q ss_pred HHHHHHcCCCEEEecccccccccCCCCCCCCChhHHHHHHHHHHHHHhCCCeeEEec
Q 046612 22 IKLMKKVGLDSFRFSISWTRILPKGKISGGVNPLGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 22 i~l~~~lG~~~~R~si~W~ri~P~~~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
++.+++.|++.+=+..+|...... +..++++-++++.+++.||++.+++
T Consensus 125 a~~~~~~G~~~~~ivts~rg~~~e--------~~~~e~i~eiir~ik~~~l~i~~s~ 173 (379)
T PLN02389 125 AKRAKEAGSTRFCMGAAWRDTVGR--------KTNFNQILEYVKEIRGMGMEVCCTL 173 (379)
T ss_pred HHHHHHcCCCEEEEEecccCCCCC--------hhHHHHHHHHHHHHhcCCcEEEECC
Confidence 355677899876666577432111 1245889999999999999876554
No 375
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.28 E-value=2.7e+02 Score=24.93 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHcCCCEEEecccccccc--cCCC-----CCCCCCh-----------hHHHHHHHHHHHHHhCCCeeEEec
Q 046612 17 HYKEDIKLMKKVGLDSFRFSISWTRIL--PKGK-----ISGGVNP-----------LGVKFYKDLINELLANDIKPFVTL 78 (223)
Q Consensus 17 ~~~eDi~l~~~lG~~~~R~si~W~ri~--P~~~-----~~g~~n~-----------~~l~~y~~~i~~l~~~gi~p~vtL 78 (223)
.-++=|+.+++.|.++++|..-=.+-+ |... ..+.++. -..++|.++.+.+++.||..+.|.
T Consensus 18 ~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~stp 97 (327)
T TIGR03586 18 RALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIFSSP 97 (327)
T ss_pred HHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEEEcc
Confidence 455667888999999999986211111 1100 0012210 125778899999999999999998
Q ss_pred CC
Q 046612 79 LH 80 (223)
Q Consensus 79 ~h 80 (223)
+.
T Consensus 98 fd 99 (327)
T TIGR03586 98 FD 99 (327)
T ss_pred CC
Confidence 63
No 376
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=20.08 E-value=4.8e+02 Score=22.95 Aligned_cols=104 Identities=21% Similarity=0.253 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCCE--EEecccccccccCCCCCC-------CCChhHHHHHHHHHHHHHhCCCeeEEecCCC---CCchhh
Q 046612 20 EDIKLMKKVGLDS--FRFSISWTRILPKGKISG-------GVNPLGVKFYKDLINELLANDIKPFVTLLHF---DPPQAL 87 (223)
Q Consensus 20 eDi~l~~~lG~~~--~R~si~W~ri~P~~~~~g-------~~n~~~l~~y~~~i~~l~~~gi~p~vtL~h~---~~P~~l 87 (223)
+=++.+++.|+.. +=+. .|....... .| .+|.+..--..++|+.|+++|+++++.+.-+ +.+..+
T Consensus 27 ~~~~~~~~~~iP~d~i~ld-dw~~~~~~~--~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y 103 (317)
T cd06594 27 EALEKARAAGVKVAGLWLQ-DWTGRRETS--FGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADDGPLYY 103 (317)
T ss_pred HHHHHHHHcCCCeeEEEEc-cccCccccc--ccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecCCchhH
Confidence 3456677776654 4444 464321111 01 2344333334899999999999999877643 222211
Q ss_pred hhh--------------h-----------CCCCChHhHHHHHHHHHHHHHHhCCCccc-EEeecCCc
Q 046612 88 EEE--------------Y-----------GGFLSPKIVKDFVDYGDFCFKTYGDRVKL-WASMNEPN 128 (223)
Q Consensus 88 ~~~--------------~-----------gg~~~~~~~~~f~~y~~~~~~~~~~~v~~-w~t~NEp~ 128 (223)
.+- | -.+.||+..+.|.+-.+......| |+. |.=+||+.
T Consensus 104 ~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G--vdg~w~D~~E~~ 168 (317)
T cd06594 104 EEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLG--LSGWMADFGEYL 168 (317)
T ss_pred HHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcC--CcEEEecCCCCC
Confidence 100 0 015688888888777776654443 544 68899964
Done!