Query 046614
Match_columns 142
No_of_seqs 127 out of 665
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3drz_A BTB/POZ domain-containi 66.9 18 0.00061 24.8 6.2 62 42-105 6-72 (107)
2 2vkp_A BTB/POZ domain-containi 63.3 12 0.00042 24.5 4.6 58 44-105 11-74 (109)
3 1und_A Advillin, P92; actin bi 54.2 4.6 0.00016 23.9 1.1 20 59-78 1-20 (37)
4 2al3_A TUG long isoform; TUG U 52.9 11 0.00039 26.2 3.1 37 43-81 11-47 (90)
5 1w8x_N Protein P31, protein C, 45.1 6.8 0.00023 28.7 1.0 28 40-67 86-123 (126)
6 1vd2_A Protein kinase C, IOTA 44.8 20 0.0007 24.6 3.4 35 49-87 15-49 (89)
7 2vpk_A Myoneurin; transcriptio 42.2 38 0.0013 22.4 4.4 52 46-105 27-83 (116)
8 1r29_A B-cell lymphoma 6 prote 35.2 47 0.0016 22.3 4.0 55 46-105 34-92 (127)
9 2if5_A Zinc finger and BTB dom 33.3 72 0.0025 21.1 4.7 56 46-105 30-88 (120)
10 1z3x_A Putative cytidyltransfe 31.9 3.3 0.00011 33.7 -2.8 30 36-66 207-236 (238)
11 3ga1_A Nucleus accumbens-assoc 31.9 64 0.0022 21.8 4.3 52 45-104 37-92 (129)
12 1yu8_X Villin; alpha helix, 3- 30.2 17 0.0006 23.9 1.0 20 59-78 31-50 (67)
13 3drx_A BTB/POZ domain-containi 30.2 58 0.002 25.5 4.2 62 42-105 12-78 (202)
14 2bkf_A Zinc-finger protein NBR 28.7 1E+02 0.0034 21.3 4.8 54 46-102 12-74 (87)
15 2xko_C PIPX, global nitrogen r 28.4 6.2 0.00021 27.7 -1.5 13 59-71 5-17 (89)
16 1qzp_A Dematin; villin headpie 26.6 15 0.00053 24.1 0.3 20 59-78 32-51 (68)
17 1ujs_A Actin-binding LIM prote 26.1 21 0.00073 24.7 0.9 20 59-78 46-65 (88)
18 2k6m_S Supervillin; SVHP, HP, 25.3 19 0.00065 23.7 0.5 20 59-78 31-50 (67)
19 1y6i_A Mg-chelatase cofactor G 25.1 7.9 0.00027 31.3 -1.7 30 36-67 199-229 (233)
20 3ohu_A Transcription regulator 22.7 84 0.0029 21.0 3.5 54 45-104 36-93 (125)
21 1wj6_A KIAA0049 protein, RSGI 22.7 1.2E+02 0.0042 21.4 4.4 56 45-103 19-83 (101)
22 3b84_A Zinc finger and BTB dom 22.2 1.3E+02 0.0046 19.9 4.5 52 46-105 29-83 (119)
23 1wy3_A Villin; structural prot 20.3 36 0.0012 19.7 1.0 18 61-78 1-18 (35)
No 1
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=66.91 E-value=18 Score=24.80 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=44.7
Q ss_pred CeEEEEeCCceeEeEeccCCC-cH--HHHHHHHhhhhhcC--CCCCCCeEecCcHHHHHHHHHHHhccC
Q 046614 42 GHFVVYTTDEKRFTVPLEYLS-RN--VFIELLRMSEEEFG--LPSFGPITLPCDSTFLNYVMSLIKGRM 105 (142)
Q Consensus 42 G~~~VyVGe~~RfvVp~~yL~-hp--~F~~LL~~aeeEfG--~~~~G~L~iPCd~~~Fe~vl~~i~~~~ 105 (142)
..+.+-|| +++|.+..+-|. +| .|..|.... .++. .+.+|.+-|-.|...|++||..++.+.
T Consensus 6 ~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 6 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 46677787 678988876664 33 567765432 1232 346789999999999999999998763
No 2
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=63.26 E-value=12 Score=24.49 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=41.4
Q ss_pred EEEEeCCc---eeEeEeccCC--CcHHHHHHHHhhhhhcCCCCCCCeEec-CcHHHHHHHHHHHhccC
Q 046614 44 FVVYTTDE---KRFTVPLEYL--SRNVFIELLRMSEEEFGLPSFGPITLP-CDSTFLNYVMSLIKGRM 105 (142)
Q Consensus 44 ~~VyVGe~---~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~i~~~~ 105 (142)
+.+.||++ ++|-+.-..| ..|.|+.++...-.|- . +.|.+| .+...|+.++..+-.+.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 34556653 8999988888 6899999997543332 2 678887 68999999999888764
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=54.20 E-value=4.6 Score=23.87 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=17.6
Q ss_pred cCCCcHHHHHHHHhhhhhcC
Q 046614 59 EYLSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEfG 78 (142)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999984
No 4
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=52.94 E-value=11 Score=26.21 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=28.3
Q ss_pred eEEEEeCCceeEeEeccCCCcHHHHHHHHhhhhhcCCCC
Q 046614 43 HFVVYTTDEKRFTVPLEYLSRNVFIELLRMSEEEFGLPS 81 (142)
Q Consensus 43 ~~~VyVGe~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~ 81 (142)
++.|.-...+|+.|++ -..-.+.++|++|-+.|||+.
T Consensus 11 ~v~Vl~~n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKV--TPSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp CEEEECTTSCEEEECC--CTTSBHHHHHHHHHHHTTCCG
T ss_pred EEEEEcCCCcEEEEEE--CCCCCHHHHHHHHHHHhCCCh
Confidence 3444445689999998 344578899999999999974
No 5
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=45.09 E-value=6.8 Score=28.68 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=18.9
Q ss_pred CCCeEEEEeCCceeEe----------EeccCCCcHHHH
Q 046614 40 NKGHFVVYTTDEKRFT----------VPLEYLSRNVFI 67 (142)
Q Consensus 40 pkG~~~VyVGe~~Rfv----------Vp~~yL~hp~F~ 67 (142)
..||+||.|-.+.+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLVPGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEECCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CcccceeeccchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 4799999997766666 688899988644
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=44.80 E-value=20 Score=24.63 Aligned_cols=35 Identities=11% Similarity=-0.062 Sum_probs=27.7
Q ss_pred CCceeEeEeccCCCcHHHHHHHHhhhhhcCCCCCCCeEe
Q 046614 49 TDEKRFTVPLEYLSRNVFIELLRMSEEEFGLPSFGPITL 87 (142)
Q Consensus 49 Ge~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~~G~L~i 87 (142)
||-.|+-||. ...|++|.++-.+-|++..+.++++
T Consensus 15 gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 15 GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 6778898988 4689999999999999865555544
No 7
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=42.16 E-value=38 Score=22.43 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=39.5
Q ss_pred EEeCCceeEeEeccCC--CcHHHHHHHHhhhhhcCCCCCCCeEec---CcHHHHHHHHHHHhccC
Q 046614 46 VYTTDEKRFTVPLEYL--SRNVFIELLRMSEEEFGLPSFGPITLP---CDSTFLNYVMSLIKGRM 105 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~iP---Cd~~~Fe~vl~~i~~~~ 105 (142)
+.|| +++|-+.-..| ..|.|++++... .++.+.|+ .+...|+.++..+-.+.
T Consensus 27 l~v~-~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 27 IVIG-EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 3444 56777777776 579999999764 35678887 78999999999887653
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=35.17 E-value=47 Score=22.35 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=41.6
Q ss_pred EEeCCceeEeEeccCC--CcHHHHHHHHhhhhhcCCCCCCCeEe-c-CcHHHHHHHHHHHhccC
Q 046614 46 VYTTDEKRFTVPLEYL--SRNVFIELLRMSEEEFGLPSFGPITL-P-CDSTFLNYVMSLIKGRM 105 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~i-P-Cd~~~Fe~vl~~i~~~~ 105 (142)
+.|| +++|-+.-..| ..|.|++++...-.| ....|.| + .+...|+.++..+-.+.
T Consensus 34 l~v~-~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 34 IVVS-REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 3444 46777777777 689999999865544 4678999 4 78899999999887653
No 9
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=33.33 E-value=72 Score=21.07 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=38.8
Q ss_pred EEeCCceeEeEeccCC--CcHHHHHHHHhhhhhcCCCCCCCeEec-CcHHHHHHHHHHHhccC
Q 046614 46 VYTTDEKRFTVPLEYL--SRNVFIELLRMSEEEFGLPSFGPITLP-CDSTFLNYVMSLIKGRM 105 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~i~~~~ 105 (142)
+.|| +++|-+.-..| ..|.|++++...-.| .....|.++ .+...|+.++..+-.+.
T Consensus 30 l~v~-~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 30 ILVE-GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 3344 56777777777 479999999754333 235678888 68999999999887664
No 10
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=31.90 E-value=3.3 Score=33.68 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=19.2
Q ss_pred CcCCCCCeEEEEeCCceeEeEeccCCCcHHH
Q 046614 36 SSVANKGHFVVYTTDEKRFTVPLEYLSRNVF 66 (142)
Q Consensus 36 ~~~vpkG~~~VyVGe~~RfvVp~~yL~hp~F 66 (142)
+..+|+||+|+.- .-+=.-|=-.+|+||.|
T Consensus 207 sl~AP~GHLP~~~-~lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTN-QLRGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCC-CTTCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCc-ccccHHHHHHHHcCccc
Confidence 5579999999854 21112233467888876
No 11
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=31.88 E-value=64 Score=21.80 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=39.5
Q ss_pred EEEeCCceeEeEeccCCC--cHHHHHHHHhhhhhcCCCCCCCeEec--CcHHHHHHHHHHHhcc
Q 046614 45 VVYTTDEKRFTVPLEYLS--RNVFIELLRMSEEEFGLPSFGPITLP--CDSTFLNYVMSLIKGR 104 (142)
Q Consensus 45 ~VyVGe~~RfvVp~~yL~--hp~F~~LL~~aeeEfG~~~~G~L~iP--Cd~~~Fe~vl~~i~~~ 104 (142)
.+.|| +++|-+.-..|. .|.|++++... ....|.|| .+...|+.++..+-.+
T Consensus 37 ~l~v~-~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 37 SVVVK-GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred EEEEC-CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 34454 567777666664 69999999875 45689996 8999999999988765
No 12
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=30.21 E-value=17 Score=23.94 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=18.5
Q ss_pred cCCCcHHHHHHHHhhhhhcC
Q 046614 59 EYLSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEfG 78 (142)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 58999999999999999984
No 13
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=30.16 E-value=58 Score=25.50 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=43.6
Q ss_pred CeEEEEeCCceeEeEeccCCC-cH--HHHHHHHhhhhhcC--CCCCCCeEecCcHHHHHHHHHHHhccC
Q 046614 42 GHFVVYTTDEKRFTVPLEYLS-RN--VFIELLRMSEEEFG--LPSFGPITLPCDSTFLNYVMSLIKGRM 105 (142)
Q Consensus 42 G~~~VyVGe~~RfvVp~~yL~-hp--~F~~LL~~aeeEfG--~~~~G~L~iPCd~~~Fe~vl~~i~~~~ 105 (142)
..+.+-|| +.||.+..+-|. +| .|..|.... .++. .+.+|.+-|-.|...|++||..++.+.
T Consensus 12 ~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~ 78 (202)
T 3drx_A 12 KWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 78 (202)
T ss_dssp CEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTTCCEEECSCSTTHHHHHHHHHHSC
T ss_pred CEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCCccEEecCChHHHHHHHHHhcCCc
Confidence 46777788 688999887764 34 566664321 1232 346789999999999999999998663
No 14
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=28.71 E-value=1e+02 Score=21.30 Aligned_cols=54 Identities=9% Similarity=0.227 Sum_probs=38.4
Q ss_pred EEeCCceeEeEeccCCCcHHHHHHHHhhhhhcCCCC---------CCCeEecCcHHHHHHHHHHHh
Q 046614 46 VYTTDEKRFTVPLEYLSRNVFIELLRMSEEEFGLPS---------FGPITLPCDSTFLNYVMSLIK 102 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~~---------~G~L~iPCd~~~Fe~vl~~i~ 102 (142)
-|-||-+||.| +++.++.|.+|-.+-..-||+.. +..|+|.=+.. |+..++...
T Consensus 12 ~f~ge~~rf~v--s~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E-~eEAlkva~ 74 (87)
T 2bkf_A 12 TFKNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGE-YEEALKMAV 74 (87)
T ss_dssp EETTEEEEEEE--SCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHH-HHHHHHHHH
T ss_pred EEcCCeeEEEe--ccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHH-HHHHHHHhc
Confidence 46688899875 68889999999999999999642 34567766544 444444443
No 15
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=28.36 E-value=6.2 Score=27.73 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.0
Q ss_pred cCCCcHHHHHHHH
Q 046614 59 EYLSRNVFIELLR 71 (142)
Q Consensus 59 ~yL~hp~F~~LL~ 71 (142)
.|||||.|.-|-.
T Consensus 5 ~YLNHPtFGlLy~ 17 (89)
T 2xko_C 5 NYLNHPTFGLLYQ 17 (89)
T ss_dssp CEEEETTTEEEEE
T ss_pred ccccCCccchhhe
Confidence 4899999976643
No 16
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=26.56 E-value=15 Score=24.15 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.3
Q ss_pred cCCCcHHHHHHHHhhhhhcC
Q 046614 59 EYLSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEfG 78 (142)
.||+.-.|++++.|+.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 58999999999999999984
No 17
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=26.14 E-value=21 Score=24.75 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=18.7
Q ss_pred cCCCcHHHHHHHHhhhhhcC
Q 046614 59 EYLSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEfG 78 (142)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 59999999999999999985
No 18
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=25.30 E-value=19 Score=23.71 Aligned_cols=20 Identities=30% Similarity=0.487 Sum_probs=18.6
Q ss_pred cCCCcHHHHHHHHhhhhhcC
Q 046614 59 EYLSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 59 ~yL~hp~F~~LL~~aeeEfG 78 (142)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 58999999999999999985
No 19
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=25.13 E-value=7.9 Score=31.29 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=20.8
Q ss_pred CcCCCCCeEEEEeCC-ceeEeEeccCCCcHHHH
Q 046614 36 SSVANKGHFVVYTTD-EKRFTVPLEYLSRNVFI 67 (142)
Q Consensus 36 ~~~vpkG~~~VyVGe-~~RfvVp~~yL~hp~F~ 67 (142)
+..+|+||+|+.-.= +-| |=-.+|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 557999999986431 222 445688999884
No 20
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=22.70 E-value=84 Score=20.95 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=39.1
Q ss_pred EEEeCCceeEeEeccCCC--cHHHHHHHHhhhhhcCCCCCCCeEec--CcHHHHHHHHHHHhcc
Q 046614 45 VVYTTDEKRFTVPLEYLS--RNVFIELLRMSEEEFGLPSFGPITLP--CDSTFLNYVMSLIKGR 104 (142)
Q Consensus 45 ~VyVGe~~RfvVp~~yL~--hp~F~~LL~~aeeEfG~~~~G~L~iP--Cd~~~Fe~vl~~i~~~ 104 (142)
.+.|| +++|-+.-..|. .|.|++++.....| ...|.+| .+...|+.++..+-.+
T Consensus 36 ~l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 36 TLIVE-RKEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEEET-TEEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred EEEEC-CEEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 34454 456777666664 69999999764333 5678887 7999999999988765
No 21
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.66 E-value=1.2e+02 Score=21.44 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=39.5
Q ss_pred EEEeCCceeEeEeccCCCcHHHHHHHHhhhhhcCCC--------C-CCCeEecCcHHHHHHHHHHHhc
Q 046614 45 VVYTTDEKRFTVPLEYLSRNVFIELLRMSEEEFGLP--------S-FGPITLPCDSTFLNYVMSLIKG 103 (142)
Q Consensus 45 ~VyVGe~~RfvVp~~yL~hp~F~~LL~~aeeEfG~~--------~-~G~L~iPCd~~~Fe~vl~~i~~ 103 (142)
+-|.||-+||.| +++.++.|.+|-.+-..-||+. . +..|+|.=+. .|+..+++..+
T Consensus 19 V~f~ge~~rF~V--s~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~-E~eEAlkva~k 83 (101)
T 1wj6_A 19 VTFKNEIQSFLV--SDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQG-EYEEALKMAVK 83 (101)
T ss_dssp EEETTEEEEEEE--SCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHH-HHHHHHHHHHH
T ss_pred EEEcCCeeEEEe--cCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHH-HHHHHHHHhcc
Confidence 346688899876 6889999999999999999964 2 3456666544 44555554443
No 22
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=22.17 E-value=1.3e+02 Score=19.86 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=38.3
Q ss_pred EEeCCceeEeEeccCC--CcHHHHHHHHhhhhhcCCCCCCCeEec-CcHHHHHHHHHHHhccC
Q 046614 46 VYTTDEKRFTVPLEYL--SRNVFIELLRMSEEEFGLPSFGPITLP-CDSTFLNYVMSLIKGRM 105 (142)
Q Consensus 46 VyVGe~~RfvVp~~yL--~hp~F~~LL~~aeeEfG~~~~G~L~iP-Cd~~~Fe~vl~~i~~~~ 105 (142)
+.|| +++|-+.-..| ..|.|++++.... .+.|.|| .+...|+.++..+-.+.
T Consensus 29 l~v~-~~~f~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~~~~~~f~~ll~~iYtg~ 83 (119)
T 3b84_A 29 LDVG-GLVFKAHWSVLACCSHFFQSLYGDGS-------GGSVVLPAGFAEIFGLLLDFFYTGH 83 (119)
T ss_dssp EEET-TEEEEECHHHHHHHCHHHHHHHTTTT-------CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred EEEC-CEEEEeeHHHHhhcCHHHHHHHCCCC-------CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence 3344 46777776666 4799999987522 5689998 66889999999887663
No 23
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=20.28 E-value=36 Score=19.71 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHhhhhhcC
Q 046614 61 LSRNVFIELLRMSEEEFG 78 (142)
Q Consensus 61 L~hp~F~~LL~~aeeEfG 78 (142)
|+.-.|++++.++.+||.
T Consensus 1 Lsd~dF~~vFgmsr~eF~ 18 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAFA 18 (35)
T ss_dssp CCHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHHCCCHHHHH
Confidence 567789999999988873
Done!