BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046615
(409 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0ABI1|RPOC_ALHEH DNA-directed RNA polymerase subunit beta' OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=rpoC PE=3 SV=1
Length = 1426
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSV 142
TL D+++ L E ++ I G+ +E G L D+ + Q D E M +V
Sbjct: 132 TLRDIERILYFEAFVVIEPGMTPLERGQLLSDEAYLDAIEQHGDEFEAKMGAE-----AV 186
Query: 143 LQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQL 201
L ++ L ++ L + +SK+ +R + I+ FL++ ++ + +VLP L
Sbjct: 187 LDLLKSLDMTGEARTLREEIEGTNSESKIKRLSKRLKLIEAFLESGNKPEWMIMDVLPVL 246
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 247 PPDLRPLVPLD 257
>sp|A1WVC8|RPOC_HALHL DNA-directed RNA polymerase subunit beta' OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=rpoC PE=3 SV=2
Length = 1430
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSV 142
TL D+++ L E Y+ I G+ +E G L D+ + + D + M +V
Sbjct: 132 TLRDVERVLYFEAYIVIEPGMTPLEQGQLLTDEQYLEAVEEHGDEFDARMGAE-----AV 186
Query: 143 LQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQL 201
L+++ + L L G +SK+ +R + ++ FL++ ++ + VLP L
Sbjct: 187 LEILKGMDLEAEARRLRDDIEATGSESKIKRLSKRLKLLEAFLESGNKPEWLIMTVLPVL 246
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 247 PPDLRPLVPLD 257
>sp|O33431|RPOC_PORCN DNA-directed RNA polymerase subunit beta' (Fragment)
OS=Porphyromonas cangingivalis GN=rpoC PE=3 SV=1
Length = 1159
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 96 EDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQAN 155
E+YL IL L E GNQ + EDDA E +A E ++ ++ + L + +
Sbjct: 88 EEYLDILDSLPE-GNQ----------DLEDDAPEKFIAKIGAE--AIYDLLCRVDLDKLS 134
Query: 156 LLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYL--DFAVNNVLPQLPPEIRKNLPMD 212
L K S D Q + +R + ++ F + GY ++ V V+P +PPE+ +P+D
Sbjct: 135 YELRAKASKDSSQQRKKEALKRLQVVESFRASEGYSRPEWMVMKVIPVIPPELHTLVPLD 194
>sp|Q8KTH8|RPOC_XANOR DNA-directed RNA polymerase subunit beta' OS=Xanthomonas oryzae pv.
oryzae (strain KACC10331 / KXO85) GN=rpoC PE=3 SV=2
Length = 1405
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
+ + + ++ L + ++ G ++K+ +R + I+ FL++ ++ V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|B2SQQ2|RPOC_XANOP DNA-directed RNA polymerase subunit beta' OS=Xanthomonas oryzae pv.
oryzae (strain PXO99A) GN=rpoC PE=3 SV=1
Length = 1405
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
+ + + ++ L + ++ G ++K+ +R + I+ FL++ ++ V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|Q2NZX9|RPOC_XANOM DNA-directed RNA polymerase subunit beta' OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=rpoC PE=3 SV=1
Length = 1405
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
+ + + ++ L + ++ G ++K+ +R + I+ FL++ ++ V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|B0RU88|RPOC_XANCB DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. campestris (strain B100) GN=rpoC PE=3 SV=1
Length = 1405
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
+ + + ++ L + ++ G ++K+ +R + I+ FL++ ++ V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|Q8PC55|RPOC_XANCP DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rpoC PE=3 SV=1
Length = 1405
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
+ + + ++ L + ++ G ++K+ +R + I+ FL++ ++ V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|Q4URD3|RPOC_XANC8 DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=rpoC PE=3 SV=1
Length = 1405
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
+ + + ++ L + ++ G ++K+ +R + I+ FL++ ++ V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|B2FQ39|RPOC_STRMK DNA-directed RNA polymerase subunit beta' OS=Stenotrophomonas
maltophilia (strain K279a) GN=rpoC PE=3 SV=1
Length = 1406
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
+ + + ++ L + + G ++K+ +R + I+ FL++ ++ V VLP
Sbjct: 191 TIDLQSEMTR------LREEIAATGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|Q3BWZ0|RPOC_XANC5 DNA-directed RNA polymerase subunit beta' OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=rpoC PE=3 SV=1
Length = 1404
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
+ + + ++ L + ++ G ++K+ +R + I+ FL++ ++ V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|Q8PNS9|RPOC_XANAC DNA-directed RNA polymerase subunit beta' OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=rpoC PE=3 SV=1
Length = 1404
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
+ + + ++ L + ++ G ++K+ +R + I+ FL++ ++ V VLP
Sbjct: 191 TIDLQSEMTR------LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|Q9PA87|RPOC_XYLFA DNA-directed RNA polymerase subunit beta' OS=Xylella fastidiosa
(strain 9a5c) GN=rpoC PE=3 SV=2
Length = 1407
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + T A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDATMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
++ + + ++ + +++ G ++K+ +R + I+ F+++ ++ + VLP
Sbjct: 191 MIDLQSEMARLREEIVV------TGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|A6UZI2|RPOC_PSEA7 DNA-directed RNA polymerase subunit beta' OS=Pseudomonas aeruginosa
(strain PA7) GN=rpoC PE=3 SV=1
Length = 1399
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + +E+L+
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVHELLN 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNKPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q9HWC9|RPOC_PSEAE DNA-directed RNA polymerase subunit beta' OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=rpoC PE=3 SV=1
Length = 1399
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + +E+L+
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVHELLN 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNKPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q02T86|RPOC_PSEAB DNA-directed RNA polymerase subunit beta' OS=Pseudomonas aeruginosa
(strain UCBPP-PA14) GN=rpoC PE=3 SV=1
Length = 1399
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + +E+L+
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVHELLN 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNKPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q890N5|RPOC_CLOTE DNA-directed RNA polymerase subunit beta' OS=Clostridium tetani
(strain Massachusetts / E88) GN=rpoC PE=3 SV=2
Length = 1135
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 124 EDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMF 183
E+ EE +A E SV +++ + L+Q + L T Q K+ + R E+++ F
Sbjct: 160 ENYGEEGFVAGMGAE--SVQKLLEEIDLNQVSKELKEALKTSTGQKKIRLIRRLEAVESF 217
Query: 184 LKAAGYLDFAVNNVLPQLPPEIRKNLPMD 212
K++ D+ + +V+P +PP++R + +D
Sbjct: 218 RKSSNRPDWMIIDVIPVIPPDLRPMVQLD 246
>sp|B1KSN2|RPOC_CLOBM DNA-directed RNA polymerase subunit beta' OS=Clostridium botulinum
(strain Loch Maree / Type A3) GN=rpoC PE=3 SV=1
Length = 1178
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 141 SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQ 200
+V ++ + L Q+++ L + T Q K+ + R E ++ F K+ D+ V +V+P
Sbjct: 175 AVKTLLDEIDLEQSSIELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPV 234
Query: 201 LPPEIRKNLPMD 212
+PP++R + +D
Sbjct: 235 IPPDLRPMVQLD 246
>sp|A5I7L3|RPOC_CLOBH DNA-directed RNA polymerase subunit beta' OS=Clostridium botulinum
(strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rpoC
PE=3 SV=1
Length = 1178
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 141 SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQ 200
+V ++ + L Q+++ L + T Q K+ + R E ++ F K+ D+ V +V+P
Sbjct: 175 AVKTLLDEIDLEQSSIELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPV 234
Query: 201 LPPEIRKNLPMD 212
+PP++R + +D
Sbjct: 235 IPPDLRPMVQLD 246
>sp|A7FZ76|RPOC_CLOB1 DNA-directed RNA polymerase subunit beta' OS=Clostridium botulinum
(strain ATCC 19397 / Type A) GN=rpoC PE=3 SV=1
Length = 1178
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 141 SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQ 200
+V ++ + L Q+++ L + T Q K+ + R E ++ F K+ D+ V +V+P
Sbjct: 175 AVKTLLDEIDLEQSSIELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPV 234
Query: 201 LPPEIRKNLPMD 212
+PP++R + +D
Sbjct: 235 IPPDLRPMVQLD 246
>sp|B1IGG1|RPOC_CLOBK DNA-directed RNA polymerase subunit beta' OS=Clostridium botulinum
(strain Okra / Type B1) GN=rpoC PE=3 SV=1
Length = 1178
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 141 SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQ 200
+V ++ + L Q+++ L + T Q K+ + R E ++ F K+ D+ V +V+P
Sbjct: 175 AVKTLLDEIDLEQSSIELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPV 234
Query: 201 LPPEIRKNLPMD 212
+PP++R + +D
Sbjct: 235 IPPDLRPMVQLD 246
>sp|A7GJ81|RPOC_CLOBL DNA-directed RNA polymerase subunit beta' OS=Clostridium botulinum
(strain Langeland / NCTC 10281 / Type F) GN=rpoC PE=3
SV=1
Length = 1178
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 141 SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQ 200
+V ++ + L Q+++ L + T Q K+ + R E ++ F K+ D+ V +V+P
Sbjct: 175 AVKTLLDEIDLEQSSIELKEELKTSTGQKKIRIIRRLEVVESFRKSGNRPDWMVIDVIPV 234
Query: 201 LPPEIRKNLPMD 212
+PP++R + +D
Sbjct: 235 IPPDLRPMVQLD 246
>sp|B8CNC6|RPOC_SHEPW DNA-directed RNA polymerase subunit beta' OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rpoC PE=3 SV=1
Length = 1404
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQEDDAEETTM-ANSWYEILS 141
TL D+++ L E ++ I G+ +E G L ++ L + D E M A + E+L
Sbjct: 131 TLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKMGAEAVLELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+++ + + + L P +++ + K++ R + I+ F ++ ++ + VLP L
Sbjct: 191 AIELEKEIEMMREEL---PSINSETRRKKIT--KRLKLIEAFFQSGNKPEWMILKVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|A3Q976|RPOC_SHELP DNA-directed RNA polymerase subunit beta' OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=rpoC PE=3 SV=1
Length = 1404
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSV 142
TL D+++ L E ++ I G+ +E G L ++ L + D E M +L +
Sbjct: 131 TLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKMGAEA--VLEL 188
Query: 143 LQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLP 202
L+ + + + LP +++ + K++ R + I+ F ++ ++ + VLP LP
Sbjct: 189 LRAIDLEKEIEEMREELPSINSETRRKKIT--KRLKLIEAFYQSGNKPEWMILKVLPVLP 246
Query: 203 PEIRKNLPMD 212
P++R +P+D
Sbjct: 247 PDLRPLVPLD 256
>sp|B0U5X6|RPOC_XYLFM DNA-directed RNA polymerase subunit beta' OS=Xylella fastidiosa
(strain M12) GN=rpoC PE=3 SV=1
Length = 1411
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDASMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
++ + + ++ + +++ G ++K+ +R + I+ F+++ ++ + VLP
Sbjct: 191 MIDLQSEMARLREEIVV------TGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|Q87A33|RPOC_XYLFT DNA-directed RNA polymerase subunit beta' OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=rpoC PE=3 SV=1
Length = 1407
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDASMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
++ + + ++ + +++ G ++K+ +R + I+ F+++ ++ + VLP
Sbjct: 191 MIDLQSEMARLREEIVV------TGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|B2IA67|RPOC_XYLF2 DNA-directed RNA polymerase subunit beta' OS=Xylella fastidiosa
(strain M23) GN=rpoC PE=3 SV=1
Length = 1407
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQE--DDAEETTMANSWYEILS 141
TL D+++ L E Y+ GL QL + Q+ QE DD + + A + YE+L
Sbjct: 131 TLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDASMGAEAVYELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYLDFAVNNVLPQ 200
++ + + ++ + +++ G ++K+ +R + I+ F+++ ++ + VLP
Sbjct: 191 MIDLQSEMARLREEIVV------TGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPV 244
Query: 201 LPPEIRKNLPMD 212
LPP++R +P+D
Sbjct: 245 LPPDLRPLVPLD 256
>sp|A8C756|THADA_MOUSE Thyroid adenoma-associated protein homolog OS=Mus musculus GN=Thada
PE=2 SV=1
Length = 1938
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 86 STLADLQQA---LEDYLPILLG-LVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILS 141
+ L DL Q LE LPILLG L+E G+ L+ +Q P +E+ E + N W E L+
Sbjct: 1773 AVLCDLLQQWDQLEPGLPILLGWLLEEGDDLEGHVQSPHQGEEEHIFEKSEVNFWAETLT 1832
Query: 142 VLQMM 146
++ +
Sbjct: 1833 FVKSL 1837
>sp|A8G1F4|RPOC_SHESH DNA-directed RNA polymerase subunit beta' OS=Shewanella sediminis
(strain HAW-EB3) GN=rpoC PE=3 SV=1
Length = 1405
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQEDDAEETTM-ANSWYEILS 141
TL D+++ L E ++ I G+ +E G L ++ L + D E M A + E+L
Sbjct: 131 TLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKMGAEAVLELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+++ + + + L P +++ + K++ R + ++ F ++ ++ + VLP L
Sbjct: 191 AIELEKEIEMMREEL---PSINSETRRKKIT--KRLKLVEAFFQSGNKPEWMILKVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|A5VXP1|RPOC_PSEP1 DNA-directed RNA polymerase subunit beta' OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q4K527|RPOC_PSEF5 DNA-directed RNA polymerase subunit beta' OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpoC PE=3
SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q889X7|RPOC_PSESM DNA-directed RNA polymerase subunit beta' OS=Pseudomonas syringae
pv. tomato (strain DC3000) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|B0KK61|RPOC_PSEPG DNA-directed RNA polymerase subunit beta' OS=Pseudomonas putida
(strain GB-1) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q88QP1|RPOC_PSEPK DNA-directed RNA polymerase subunit beta' OS=Pseudomonas putida
(strain KT2440) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|B1JDX0|RPOC_PSEPW DNA-directed RNA polymerase subunit beta' OS=Pseudomonas putida
(strain W619) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|C3K2Y2|RPOC_PSEFS DNA-directed RNA polymerase subunit beta' OS=Pseudomonas
fluorescens (strain SBW25) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|A5N4P0|RPOC_CLOK5 DNA-directed RNA polymerase subunit beta' OS=Clostridium kluyveri
(strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rpoC PE=3
SV=1
Length = 1174
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 141 SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQ 200
SV +++ + L Q +L+L Q K+ + R E ++ F K+ ++ V +V+P
Sbjct: 175 SVKKLLEEIDLEQLSLVLKEDLKNSTGQKKIRIIRRLEVVESFRKSGNRPEWMVIDVIPV 234
Query: 201 LPPEIRKNLPMD 212
+PP++R + +D
Sbjct: 235 IPPDLRPMVQLD 246
>sp|Q4ZMN8|RPOC_PSEU2 DNA-directed RNA polymerase subunit beta' OS=Pseudomonas syringae
pv. syringae (strain B728a) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q48D30|RPOC_PSE14 DNA-directed RNA polymerase subunit beta' OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=rpoC PE=3
SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q1IFX2|RPOC_PSEE4 DNA-directed RNA polymerase subunit beta' OS=Pseudomonas
entomophila (strain L48) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|B1KMY9|RPOC_SHEWM DNA-directed RNA polymerase subunit beta' OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=rpoC PE=3 SV=1
Length = 1405
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQEDDAEETTM-ANSWYEILS 141
TL D+++ L E ++ I G+ +E G L ++ L + D E M A + E+L
Sbjct: 131 TLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKMGAEAVLELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + L P +++ + K++ R + I+ F ++ ++ + VLP L
Sbjct: 191 AIDLEKEIDMMREEL---PSINSETRRKKIT--KRLKLIEAFFQSGNKPEWMILKVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q3K5Y2|RPOC_PSEPF DNA-directed RNA polymerase subunit beta' OS=Pseudomonas
fluorescens (strain Pf0-1) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLEHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFQGSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|A4XZ96|RPOC_PSEMY DNA-directed RNA polymerase subunit beta' OS=Pseudomonas mendocina
(strain ymp) GN=rpoC PE=3 SV=1
Length = 1399
Score = 35.0 bits (79), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQ-EDDAEETTMANSWYEILS 141
TL D+++ L E Y+ I G+ +E G L D+ F L + DD + A + E+L
Sbjct: 131 TLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVRELLH 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + + P+T+++ K+S R + ++ F + ++ V VLP L
Sbjct: 191 AIDLDHEIGRLREEI---PQTNSETKIKKLS--KRLKLMEAFKDSGNLPEWMVLTVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q31IY8|RPOC_THICR DNA-directed RNA polymerase subunit beta' OS=Thiomicrospira
crunogena (strain XCL-2) GN=rpoC PE=3 SV=1
Length = 1408
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 159 LPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMD 212
+ TS++ Q K+S R + ID F+++ ++ + +VLP LPPE+R +P+D
Sbjct: 205 MEATSSETKQKKIS--KRLKLIDSFVQSGNKPEWMILDVLPVLPPELRPLVPLD 256
>sp|Q28UX6|RPOC_JANSC DNA-directed RNA polymerase subunit beta' OS=Jannaschia sp. (strain
CCS1) GN=rpoC PE=3 SV=1
Length = 1404
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 87 TLADLQQAL--EDYLPILLGLVE-NGNQLQDKLQFPWLNQEDDAEETTMANSWYEIL--- 140
TL DL++ L E+Y+ I GL + QL + +F DA++ A+++ +
Sbjct: 133 TLRDLERILYFENYVVIEPGLTDLTYGQLMGEEEFM------DAQDAYGADAFQANIGAE 186
Query: 141 SVLQMMTMLSL-SQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLP 199
++ +M++ + L S+AN L G + R + ++ FL++ ++ V V+P
Sbjct: 187 AIREMLSQIDLESEANQLREDLKEATGELKPKKIIKRLKIVESFLESGNRPEWMVMTVVP 246
Query: 200 QLPPEIRKNLPMD 212
+PPE+R +P+D
Sbjct: 247 VIPPELRPLVPLD 259
>sp|A8GYX0|RPOC_SHEPA DNA-directed RNA polymerase subunit beta' OS=Shewanella pealeana
(strain ATCC 700345 / ANG-SQ1) GN=rpoC PE=3 SV=1
Length = 1404
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQEDDAEETTM-ANSWYEILS 141
TL D+++ L E ++ I G+ +E G L ++ L + D + M A + E+L
Sbjct: 131 TLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFDAKMGAEAVLELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+++ + + + L P +++ + KV+ R + I+ F + ++ + VLP L
Sbjct: 191 AIELEKEIEMMREEL---PSINSETRRKKVT--KRLKLIEAFFTSGNKPEWMILKVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q7MX26|RPOC_PORGI DNA-directed RNA polymerase subunit beta' OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=rpoC PE=3 SV=1
Length = 1433
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 96 EDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEIL------------SVL 143
E Y+ I G+ E +QL + +L++ D+ E T N E ++
Sbjct: 138 ERYVVIQPGVAEGLSQLDLLSEEEYLDKLDEIERTHKGNQNLEDTNPDKFIAKIGAEAIY 197
Query: 144 QMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYL--DFAVNNVLPQ 200
++ + L + L + +TDG Q + + +R + ++ F + G ++ V V+P
Sbjct: 198 DLLCRVDLDSISYELRDRANTDGSQQRKTEALKRLQVVESFRASKGVNRPEWMVMKVIPV 257
Query: 201 LPPEIRKNLPMD 212
+PP++R +P+D
Sbjct: 258 IPPDLRPLVPLD 269
>sp|B2RL44|RPOC_PORG3 DNA-directed RNA polymerase subunit beta' OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=rpoC PE=3 SV=1
Length = 1433
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 96 EDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEIL------------SVL 143
E Y+ I G+ E +QL + +L++ D+ E T N E ++
Sbjct: 138 ERYVVIQPGVAEGLSQLDLLSEEEYLDKLDEIERTHKGNQNLEDTNPDKFIAKIGAEAIY 197
Query: 144 QMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRR-ESIDMFLKAAGYL--DFAVNNVLPQ 200
++ + L + L + +TDG Q + + +R + ++ F + G ++ V V+P
Sbjct: 198 DLLCRVDLDSISYELRDRANTDGSQQRKTEALKRLQVVESFRASKGVNRPEWMVMKVIPV 257
Query: 201 LPPEIRKNLPMD 212
+PP++R +P+D
Sbjct: 258 IPPDLRPLVPLD 269
>sp|Q089R0|RPOC_SHEFN DNA-directed RNA polymerase subunit beta' OS=Shewanella
frigidimarina (strain NCIMB 400) GN=rpoC PE=3 SV=1
Length = 1408
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 87 TLADLQQAL--EDYLPILLGL--VENGNQLQDKLQFPWLNQEDDAEETTM-ANSWYEILS 141
TL D+++ L E ++ I G+ +E G L ++ L + D E M A + E+L
Sbjct: 131 TLRDIERVLYFESFVVIEPGMTTLERGQMLTEETYLDALEEYGDEFEAKMGAEAVLELLR 190
Query: 142 VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQL 201
+ + + + L P +++ + KV+ R + ++ F + ++ + VLP L
Sbjct: 191 AINLAEQIEQMREEL---PSINSETRRKKVT--KRLKLMEAFFTSGNKPEWMILKVLPVL 245
Query: 202 PPEIRKNLPMD 212
PP++R +P+D
Sbjct: 246 PPDLRPLVPLD 256
>sp|Q3AZA3|RPOC1_SYNS9 DNA-directed RNA polymerase subunit gamma OS=Synechococcus sp.
(strain CC9902) GN=rpoC1 PE=3 SV=1
Length = 634
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 120 WLNQEDD--AEETTMANSWYEIL---SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVE 174
WL ED+ AEE+ + N + ++ Q++ LSL + L + Q + +
Sbjct: 170 WLEIEDEIYAEESEIENEPVVGIGAEALKQLLEDLSLEEVAQQLREDINGSKGQKRAKLI 229
Query: 175 CRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMD 212
R ID F+ D+ V +V+P +PP++R + +D
Sbjct: 230 KRLRVIDNFIATGARPDWMVLDVIPVIPPDLRPMVQLD 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,042,881
Number of Sequences: 539616
Number of extensions: 6196157
Number of successful extensions: 16353
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 16288
Number of HSP's gapped (non-prelim): 236
length of query: 409
length of database: 191,569,459
effective HSP length: 120
effective length of query: 289
effective length of database: 126,815,539
effective search space: 36649690771
effective search space used: 36649690771
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)