Query 046615
Match_columns 409
No_of_seqs 173 out of 237
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09243 BRO1_Brox_like Protein 100.0 6.7E-72 1.4E-76 562.3 36.2 335 31-397 7-353 (353)
2 cd09246 BRO1_Alix_like_1 Prote 100.0 7.5E-68 1.6E-72 534.3 33.8 326 26-399 2-344 (353)
3 cd09241 BRO1_ScRim20-like Prot 100.0 2E-67 4.3E-72 531.6 33.1 316 25-397 2-331 (355)
4 cd09242 BRO1_ScBro1_like Prote 100.0 2.7E-67 5.9E-72 529.4 33.3 326 26-397 2-345 (348)
5 cd09240 BRO1_Alix Protein-inte 100.0 1E-66 2.2E-71 524.9 34.4 320 25-397 3-344 (346)
6 cd09239 BRO1_HD-PTP_like Prote 100.0 1.6E-66 3.6E-71 525.7 33.3 322 26-399 9-350 (361)
7 cd09034 BRO1_Alix_like Protein 100.0 1.4E-63 3E-68 499.6 35.1 324 26-395 2-343 (345)
8 cd09244 BRO1_Rhophilin Protein 100.0 6.6E-62 1.4E-66 489.1 32.5 303 26-380 2-325 (350)
9 cd09245 BRO1_UmRIM23-like Prot 100.0 2.5E-60 5.5E-65 487.5 34.3 359 33-402 8-413 (413)
10 PF03097 BRO1: BRO1-like domai 100.0 4.4E-59 9.6E-64 471.9 26.1 322 26-398 3-336 (377)
11 cd09247 BRO1_Alix_like_2 Prote 100.0 1.4E-57 3.1E-62 458.5 28.2 279 90-398 58-345 (346)
12 cd09248 BRO1_Rhophilin_1 Prote 100.0 4.6E-56 1E-60 448.4 31.3 301 26-376 2-356 (384)
13 cd09249 BRO1_Rhophilin_2 Prote 100.0 3.5E-52 7.6E-57 420.0 31.4 300 26-373 2-354 (385)
14 KOG2220 Predicted signal trans 100.0 5.3E-43 1.1E-47 378.8 25.8 317 26-400 6-336 (714)
15 KOG2220 Predicted signal trans 96.0 0.071 1.5E-06 59.4 12.2 262 30-331 107-388 (714)
16 cd02682 MIT_AAA_Arch MIT: doma 81.3 6.7 0.00015 31.6 6.6 63 291-369 5-67 (75)
17 PF15506 OCC1: OCC1 family 74.9 2.7 5.9E-05 31.8 2.4 29 1-29 1-46 (62)
18 cd02681 MIT_calpain7_1 MIT: do 74.0 12 0.00025 30.2 6.1 65 291-370 5-69 (76)
19 PF04212 MIT: MIT (microtubule 69.1 11 0.00023 29.1 4.7 61 291-367 4-64 (69)
20 KOG4642 Chaperone-dependent E3 65.9 16 0.00035 36.1 6.2 74 248-328 23-111 (284)
21 PF00515 TPR_1: Tetratricopept 65.9 9.1 0.0002 24.6 3.3 30 292-324 1-30 (34)
22 PF07719 TPR_2: Tetratricopept 61.2 13 0.00027 23.6 3.3 30 292-324 1-30 (34)
23 cd02683 MIT_1 MIT: domain cont 58.7 22 0.00048 28.5 4.9 64 291-370 5-68 (77)
24 cd02679 MIT_spastin MIT: domai 56.5 45 0.00097 27.1 6.3 70 287-365 3-72 (79)
25 cd02677 MIT_SNX15 MIT: domain 55.8 19 0.00041 28.8 4.0 65 290-370 4-68 (75)
26 cd02678 MIT_VPS4 MIT: domain c 53.5 60 0.0013 25.5 6.6 63 291-369 5-67 (75)
27 KOG2003 TPR repeat-containing 51.4 3.6E+02 0.0077 29.4 13.6 97 126-264 495-607 (840)
28 smart00745 MIT Microtubule Int 45.0 81 0.0017 24.5 6.1 63 290-368 6-68 (77)
29 cd02656 MIT MIT: domain contai 41.8 55 0.0012 25.5 4.6 64 291-370 5-68 (75)
30 PRK12370 invasion protein regu 39.6 5.2E+02 0.011 27.9 13.3 30 25-60 124-153 (553)
31 PF13424 TPR_12: Tetratricopep 38.1 98 0.0021 23.4 5.5 36 136-191 42-77 (78)
32 cd02684 MIT_2 MIT: domain cont 36.7 66 0.0014 25.6 4.4 64 291-370 5-68 (75)
33 KOG2460 Signal recognition par 34.0 3.7E+02 0.0081 29.5 10.6 80 254-337 382-464 (593)
34 KOG1840 Kinesin light chain [C 33.7 6.6E+02 0.014 27.4 13.7 36 137-192 280-315 (508)
35 TIGR02552 LcrH_SycD type III s 31.7 3E+02 0.0064 22.7 9.0 73 233-324 39-114 (135)
36 PF13424 TPR_12: Tetratricopep 31.4 2.1E+02 0.0046 21.4 6.5 32 292-326 46-77 (78)
37 PF13181 TPR_8: Tetratricopept 29.2 82 0.0018 19.8 3.2 29 293-324 2-30 (34)
38 PF10952 DUF2753: Protein of u 28.5 1.6E+02 0.0034 26.5 5.6 94 257-361 22-121 (140)
39 smart00028 TPR Tetratricopepti 27.9 50 0.0011 18.7 1.9 27 294-323 3-29 (34)
40 PF08238 Sel1: Sel1 repeat; I 27.4 1.7E+02 0.0037 18.9 4.6 14 175-188 23-36 (39)
41 KOG2002 TPR-containing nuclear 25.3 1.2E+03 0.026 27.7 13.2 172 130-323 73-264 (1018)
42 PF06552 TOM20_plant: Plant sp 24.8 1.6E+02 0.0034 27.9 5.3 41 140-196 69-109 (186)
43 KOG4626 O-linked N-acetylgluco 23.3 1.1E+03 0.024 26.9 12.0 165 96-321 202-414 (966)
44 PF04783 DUF630: Protein of un 22.4 42 0.0009 26.0 0.8 9 1-9 1-9 (60)
45 KOG2002 TPR-containing nuclear 22.2 1.6E+02 0.0035 34.3 5.7 49 141-197 751-799 (1018)
46 PF14637 FNIP_M: Folliculin-in 22.1 3.3E+02 0.0073 26.6 7.2 89 14-125 11-102 (232)
47 PF04876 Tenui_NCP: Tenuivirus 21.2 1.9E+02 0.0042 26.5 4.9 53 39-103 109-169 (175)
48 PF12309 KBP_C: KIF-1 binding 20.5 6.1E+02 0.013 26.3 9.2 83 130-223 219-301 (371)
49 PRK15359 type III secretion sy 20.2 5E+02 0.011 22.5 7.5 28 293-323 93-120 (144)
No 1
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=100.00 E-value=6.7e-72 Score=562.28 Aligned_cols=335 Identities=19% Similarity=0.297 Sum_probs=291.2
Q ss_pred CCCCCCCCCc--hHHHhHhhHHHHHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHHHHHHHHHHhhhh-
Q 046615 31 LRIPKPVDFA--EPIGDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLVE- 107 (409)
Q Consensus 31 lr~~~~vdl~--~~L~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al~~Yl~~L~gl~~- 107 (409)
||-+.+|+|. .-.++-=.++++++|+.-|++++.+. ++. +.+..+|++++++|||+|+||+.
T Consensus 7 ~k~t~~~~f~~~~~~~~~~~~~~~~~~~~~r~~l~~~~--------------~~~-~~~~~~~~~a~~~Yl~ll~g~~~~ 71 (353)
T cd09243 7 LKATAPVKFDLKGVATTPAASKLCSDLRTARARLLELL--------------SDP-SNDVDTVKTAFNAYLSLLQGFILA 71 (353)
T ss_pred cccccccccccccccCChhHHHHHHHHHHHHHHHHHHh--------------cCC-CCCHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777772 22223334578999999999999999 555 88899999999999999999996
Q ss_pred -----cCcCCCCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHH
Q 046615 108 -----NGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDM 182 (409)
Q Consensus 108 -----k~~~l~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~ 182 (409)
++++++..|.|+|+|+|++..+++++|++||++|||||||+||+++|+.+ ... ++ .++|++|+||++
T Consensus 72 ~d~~~~~~~l~~~v~F~W~dsl~~~~~~~q~sl~fEk~sVLfNigal~s~~As~~-~~~------~~-~s~e~~K~A~~~ 143 (353)
T cd09243 72 LDGKTQESKLRYLINFKWTDSLLGNEPSVQQDAIFELASMLFNVALWYTKHASKL-AGK------ED-ITEDEAKDVHKS 143 (353)
T ss_pred ccccCCccccceeeeEEEECCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHH-hcc------CC-CCcHHHHHHHHH
Confidence 67999999999999999766899999999999999999999999999544 322 22 456899999999
Q ss_pred HHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 046615 183 FLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEA 262 (409)
Q Consensus 183 f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e~s~~Y~~A 262 (409)
||+|||||+||+++++|.+++. ..+|+||+++++++|+.|||||||||||+|||++++ +++||||||+|+++||++|
T Consensus 144 fq~AAG~F~~l~e~~l~~l~~~--~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~k~-k~sliaKLA~q~a~~Y~~A 220 (353)
T cd09243 144 LRTAAGIFQFVKENYIPKLIEP--AEKGSDLDPRVLEAYINQCTAEAQEVTVARAIELKH-NAGLISALAYETAKLFQKA 220 (353)
T ss_pred HHHHHHHHHHHHHhhccccccc--CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHH
Confidence 9999999999999999977543 346789999999999999999999999999999854 5569999999999999999
Q ss_pred HHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-
Q 046615 263 QENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPL- 341 (409)
Q Consensus 263 ~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~- 341 (409)
.+.+++.+ ..|.++|+.|+++|+++|+|+||||+|+++++ +++||||||||+.|+++++++++.|++|..+.+.
T Consensus 221 ~~~l~~~~--~~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e---~~k~GeaIa~L~~A~~~~k~a~~~~k~y~~~~~~~ 295 (353)
T cd09243 221 DDSLSSLD--PEYSGKWRKYLQLKSVFYLAYAYCYHGETLLA---KDKCGEAIRSLQESEKLYNKAEALCKEYAKTKGPG 295 (353)
T ss_pred HHHHHcCC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHh---cchHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Confidence 99998743 35778899999999999999999999999999 8999999999999999999999999999876432
Q ss_pred -CCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCCCCCCCCcccc--ccCcccc
Q 046615 342 -SRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPALPDFQL--SLKPEDF 397 (409)
Q Consensus 342 -~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~~~p~Lp~~~l--~~~p~~~ 397 (409)
...|..+.+++.+.+.|++.|++++||||+|| |++||+++|.++..+. +++|+||
T Consensus 296 ~~~~~~~~~~~~~l~~~I~~~L~~aeKDNdfIY-h~~VP~e~p~~e~k~~~g~~~~~~~ 353 (353)
T cd09243 296 TTAKPDQHLFFRKLGPLVKRTLEKCERENGFIY-HQKVPDEVPQLELKATYGLVSPEEF 353 (353)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHhhhhceec-cccCCCCCCccccccccCccCCCCC
Confidence 33355567899999999999999999999555 9999999999997663 5999987
No 2
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=100.00 E-value=7.5e-68 Score=534.32 Aligned_cols=326 Identities=21% Similarity=0.217 Sum_probs=285.8
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHHH-----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRRL-----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQA 94 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~~-----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~a 94 (409)
+.|| +|++++|||.+||++||+++| +.+|+.||+++++.. .++ ...++.
T Consensus 2 l~ip-~K~t~~vd~~~~L~~~I~~~y~~~~~~~~~~~l~~l~~LR~~~~~~~--------------~~~-----~~~~~~ 61 (353)
T cd09246 2 LSIH-RKKTETVDLVSPLRAYISETYSEREAQDAEDDLAELQQLRSEVRTLQ--------------EKH-----AASREL 61 (353)
T ss_pred CCCC-CCcccccchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHhhcCC--------------CCC-----hhHHHH
Confidence 5789 999999999999999999865 677999999986654 333 233668
Q ss_pred HHHHHHHHHhhhhcCcCC----CCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCcc
Q 046615 95 LEDYLPILLGLVENGNQL----QDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSK 170 (409)
Q Consensus 95 l~~Yl~~L~gl~~k~~~l----~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r 170 (409)
+.+||.+|..+..+++.. +.+|.|+|+|+|+++.+++++|+.||++|||||+|+|++++|.+ +++
T Consensus 62 l~~Yy~~L~~l~~rfp~~~~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~vlfNiaal~s~~a~~-----------~~~ 130 (353)
T cd09246 62 LLRYYRALCAVESRFPISEESGHARVSFSWYDAFRPHRKATQANVHFEKAAVLFNLGALSSQLGLQ-----------QDR 130 (353)
T ss_pred HHHHHHHHHHHHccCCCCcccccccceeEeeccCCCCcceeecchHHHHHHHHHHHHHHHHHHHHh-----------cCC
Confidence 999999999999886433 35799999999987789999999999999999999999999932 567
Q ss_pred CChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 046615 171 VSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRR 250 (409)
Q Consensus 171 ~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliak 250 (409)
.++|++|+||++||+|||+|+||++++++.+. ..+++||++++|++|+.+||||||||+|+||+.++++. +||||
T Consensus 131 ~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~----~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~~~~k~-sliAK 205 (353)
T cd09246 131 TTAEGIKQACHAFQAAAGAFAHLRDKVSGKTG----GFRTPDLTAECLGMLESLMLAQAQECFYEKAVADGKSP-AVCSK 205 (353)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhcccccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cHHHH
Confidence 88999999999999999999999999987553 34578999999999999999999999999999986666 59999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 046615 251 FACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKM 330 (409)
Q Consensus 251 LA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~ 330 (409)
||.|++++|++|.+.++...+...|.+.|+.|++.|.++|.|+||||+|.++.+ +++|||+||||+.|.+.++++.+
T Consensus 206 La~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~k 282 (353)
T cd09246 206 LAKQARSYYEEALEALDSPPLKGHFDKSWVAHVQLKAAYFRAEALYRAAKDLHE---KEDIGEEIARLRAASDALAEARK 282 (353)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH---hcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997667777889999999999999999999999999999 99999999999999999999988
Q ss_pred HhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCC--CCCCCCccccccCccccCC
Q 046615 331 TCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQ--TAPALPDFQLSLKPEDFIL 399 (409)
Q Consensus 331 ~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~--~~p~Lp~~~l~~~p~~~~l 399 (409)
..+.+. .+.+..+++.+.+.|++.+++++||||+|| |++||+ ++|+|+...+ ++|.|+.=
T Consensus 283 ~~~~~~-------~~~~~~~~~~l~~~v~~~l~~aekdNd~IY-~~~VP~~~~Lp~i~~~~~-vk~i~~~~ 344 (353)
T cd09246 283 QAKGVN-------GDELIEAVSELEQVINELLERAEKENDCVY-LDRVPAPSDLPPLGAASM-VKPAAPPA 344 (353)
T ss_pred HhhcCC-------cHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cCCCCCcccCCCCCCccc-ccCCCCcc
Confidence 765321 125778999999999999999999999665 999996 8898888777 68887543
No 3
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=100.00 E-value=2e-67 Score=531.58 Aligned_cols=316 Identities=19% Similarity=0.209 Sum_probs=281.1
Q ss_pred EEecCCCCCCCCCCCchHHHhHhhHHH----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHH
Q 046615 25 AVFVPGLRIPKPVDFAEPIGDELSRRL----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQA 94 (409)
Q Consensus 25 ~~~vP~lr~~~~vdl~~~L~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~a 94 (409)
.+.|| +|++.+||+.+||++||+++| ++.|++||+++++.. .+ . ..++.
T Consensus 2 ~l~ip-~K~t~~vd~~~~l~~~I~~~y~~~~~~~~~dl~~l~~lR~~~~~~~---------------~~-~----~~~~~ 60 (355)
T cd09241 2 LLSIP-FKRTLPVDLKDALRNYISNHYFQTPSSFEDDLAEIDKLRNDAINPE---------------PS-V----NGLSL 60 (355)
T ss_pred cCccC-CCcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhCCC---------------CC-h----hHHHH
Confidence 36899 999999999999999999865 778999999986543 33 2 23568
Q ss_pred HHHHHHHHHhhhhcCcCCCCccceecccCCCC--CcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCC
Q 046615 95 LEDYLPILLGLVENGNQLQDKLQFPWLNQEDD--AEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVS 172 (409)
Q Consensus 95 l~~Yl~~L~gl~~k~~~l~~~v~F~W~~a~~~--~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s 172 (409)
+.+||.+|..++.+++ +.+|.|+|+|+|++ ..++++.|++||++|||||||++++++|.+ +++.+
T Consensus 61 l~~Yy~~L~~l~~rfp--~~~i~F~W~d~~~~~~~~~~~~~~l~fEka~VLfNigal~sq~a~~-----------~~~~~ 127 (355)
T cd09241 61 LKEYYAQLVVLSKKFP--DDQLEFTWYPTLGYKSSGPVSLSSLKFERANILYNLGALYSQLALS-----------ENRYT 127 (355)
T ss_pred HHHHHHHHHHHHhcCC--CcCCceeeecccCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHH-----------cCCCC
Confidence 9999999999999875 77899999999986 368999999999999999999999999943 56678
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 046615 173 VECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFA 252 (409)
Q Consensus 173 ~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA 252 (409)
+|++|+||++||+|||||+||++++++.+ .+|+||++++|++|+.+||||||||+|+||+.+++++ +||||||
T Consensus 128 ~~glK~A~~~fq~AAG~F~~l~~~~~~~~------~~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~~k~-sliAKLa 200 (355)
T cd09241 128 DEGLKRACSYFQASAGCFEYILQHLLPTL------SPPPDLDENTLKALESLMLAQAQECFWQKAISDGTKD-SLIAKLA 200 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccc------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHHH
Confidence 89999999999999999999999999854 3667999999999999999999999999999997765 5999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 046615 253 CELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTC 332 (409)
Q Consensus 253 ~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~ 332 (409)
+|++++|++|.+.++..+ .|.+.|..|+++|.++|+|+||||+|+++.+ +++|||+||||+.|.+.++++.+.+
T Consensus 201 ~qv~~~Y~~a~~~l~~~~---~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~e---~~k~Ge~Ia~L~~A~~~l~~a~~~~ 274 (355)
T cd09241 201 AQVSDYYQEALKYANKSD---LIRSDWINHLKVKKHHFKAAAHYRMALVALE---KSKYGEEVARLRVALAACKEALKEA 274 (355)
T ss_pred HHHHHHHHHHHHHHhcCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998543 4778899999999999999999999999999 8999999999999999999999988
Q ss_pred hhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCC--CCCCCCccccccCcccc
Q 046615 333 ESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQ--TAPALPDFQLSLKPEDF 397 (409)
Q Consensus 333 ~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~--~~p~Lp~~~l~~~p~~~ 397 (409)
+.+ .+.+..+++.+.+.|++.|++++||||+|| ||+||+ ++|+++...+ ++|.++
T Consensus 275 ~~~--------~~~~~~~~~~l~~~i~~~l~~aekdNd~IY-~e~VP~~~~L~~i~~~~~-vk~~~~ 331 (355)
T cd09241 275 RYG--------NKAVLEDLQGLKDIVKESLKRAERDNDLIY-LQPVPPASELPPIKPASM-VKAIVP 331 (355)
T ss_pred hcc--------chhHHHHHHHHHHHHHHHHHHHhhccCeeC-CcCCCCcccCCCCCCccc-ccccCc
Confidence 753 345667889999999999999999999665 999996 9999997766 788865
No 4
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=100.00 E-value=2.7e-67 Score=529.37 Aligned_cols=326 Identities=19% Similarity=0.180 Sum_probs=282.9
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHHH----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRRL----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQAL 95 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al 95 (409)
+.|| +|++++||+..||++||+++| +++|++||++++... .+ . ..++.+
T Consensus 2 l~lp-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~~lR~~~~~~~---------------~~-~----~~~~~l 60 (348)
T cd09242 2 ISLP-LKDTEEVDWKKPLSSYLKRSYGSSTFYYEEEIAEFDRLRQDANGVL---------------AD-E----TGRDLL 60 (348)
T ss_pred CCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC---------------CC-H----HHHHHH
Confidence 5789 999999999999999999865 788999999986544 22 2 335678
Q ss_pred HHHHHHHHhhhhcCcCC--CCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCCh
Q 046615 96 EDYLPILLGLVENGNQL--QDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSV 173 (409)
Q Consensus 96 ~~Yl~~L~gl~~k~~~l--~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~ 173 (409)
.+||.+|..+..+++.. +.+|.|+|+|+|++..+++++|++||++|||||||+|++++|+. +.+.++
T Consensus 61 ~~Yy~qL~~l~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~-----------~~~~~~ 129 (348)
T cd09242 61 YKYYGQLELLELRFPFNNKELKVDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGALLSQLAAE-----------KYREDE 129 (348)
T ss_pred HHHHHHHHHHHhhcCCCCccccceeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHHH-----------hccCCh
Confidence 89999999998886432 35799999999996689999999999999999999999999954 445688
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCchHHHHHH
Q 046615 174 ECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSV--NATVAVKRRF 251 (409)
Q Consensus 174 e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~--k~~~sliakL 251 (409)
|++|+||++||+|||||+||++++++ .+|+||++++|++|+.+||||||||+|+|||.++ +.+.+|||||
T Consensus 130 ~~~K~A~~~fq~AAG~f~~l~e~~~~--------~ps~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~~~~~~~k~sliaKL 201 (348)
T cd09242 130 DDLKEAITNLQQAAGCFQYINENFLH--------APSVDLQQENVKFLVKLMLAQAQEIFLLKLINGDDAQKKASLISKL 201 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH
Confidence 99999999999999999999999975 2457999999999999999999999999999987 2444599999
Q ss_pred HHHHHHHHHHHHHHHhcCC--CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 046615 252 ACELVKYWHEAQENIVNLP--LANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESK 329 (409)
Q Consensus 252 A~e~s~~Y~~A~~~l~~~~--i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~ 329 (409)
|+|++++|++|.+.++... ....+.+.|+.|+++|.++|+|+||||+|+++.+ +++|||+||||+.|.++++++.
T Consensus 202 a~~~~~~Y~~a~~~l~~~~~~~~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~ 278 (348)
T cd09242 202 ASATANLYESCVEFLKEIQEKGISYGDPKWISLVQCKAHYYKSLAAYYHALALEA---AGKYGEAIAYLTQAESILKEAN 278 (348)
T ss_pred HHHHHHHHHHHHHHHhccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHH---hccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998754 2234778899999999999999999999999999 8999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCC--CCCCCCccccccCcccc
Q 046615 330 MTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQ--TAPALPDFQLSLKPEDF 397 (409)
Q Consensus 330 ~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~--~~p~Lp~~~l~~~p~~~ 397 (409)
+.++.+..+.+ ...+.+..+++.+...|.+.|++++||||+|| |++||+ ++|+++...+ ++|.|+
T Consensus 279 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~aekDNd~IY-~~~VP~~~~L~~i~~~~~-vk~~p~ 345 (348)
T cd09242 279 PQKLSLKASAG-DAAYALNDDFKGQKDTVEEKLKELEKDNDFIY-HDIVPSEVTLPSIKPLDA-AKPIPI 345 (348)
T ss_pred HHHhcCCCccc-cchhHHHHHHHHHHHHHHHHHHHHhcccCeec-cCCCCCccccCCCCcccc-CCCCCC
Confidence 98876654433 33456888999999999999999999999665 999995 8999998777 688774
No 5
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=100.00 E-value=1e-66 Score=524.87 Aligned_cols=320 Identities=20% Similarity=0.219 Sum_probs=278.8
Q ss_pred EEecCCCCCCCCCCCchHHHhHhhHHH------------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHH
Q 046615 25 AVFVPGLRIPKPVDFAEPIGDELSRRL------------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQ 92 (409)
Q Consensus 25 ~~~vP~lr~~~~vdl~~~L~~~I~~~~------------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~ 92 (409)
.+.|| +|++++||+.+||++||+++| +++|+.||++++... .+.+ .++ +
T Consensus 3 ~l~ip-lK~t~~vd~~~~l~~~I~~~y~~~~~~~~~~~~l~~l~~lR~~~~~~~-------------~~~~-~~~----~ 63 (346)
T cd09240 3 FISVP-LKKSSEVDLVKPLEKFIKNTYSSGEEQADYKEAIKELNKLRNNAVCRP-------------LDKH-ESS----L 63 (346)
T ss_pred eeecc-CcCCCcCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhcCC-------------CCcc-hhH----H
Confidence 57899 999999999999999999875 567999999986643 1222 222 5
Q ss_pred HHHHHHHHHHHhhhhcCcCC--CCccceecccCCCC------CcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 046615 93 QALEDYLPILLGLVENGNQL--QDKLQFPWLNQEDD------AEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTST 164 (409)
Q Consensus 93 ~al~~Yl~~L~gl~~k~~~l--~~~v~F~W~~a~~~------~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~ 164 (409)
+.+.+||.+|..+..+++.. +..|.|+|+|+|+. ++.++++|+.||++|||||||+|++++|.+
T Consensus 64 ~~l~~Yy~qL~~l~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal~s~la~~-------- 135 (346)
T cd09240 64 ELLLRYYDQLCAIEPKFPFSESQIQVTFTWKDAFDKGSLFGGSKKLALSSLGYEKVCVLFNIAALQSQIAAE-------- 135 (346)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccccceeeeecccccccccCCCcccccccHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 67899999999999886433 25899999999863 346799999999999999999999999932
Q ss_pred CCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 046615 165 DGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNAT 244 (409)
Q Consensus 165 dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~ 244 (409)
+++.++|++|+||++||+|||||+||++++++.++ ..+++||++++|.+|..+||||||||+|+||+.+++++
T Consensus 136 ---~~~~~~eglK~A~~~fq~AAG~F~~l~e~~~~~~~----~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai~~~~k~ 208 (346)
T cd09240 136 ---QNLDTDEGLKLAAKLFQQAAGIFNHLKETVLSALQ----QEPTPDLSPDTLSALSALMLAQAQEVFYLKATRDKMKD 208 (346)
T ss_pred ---cCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccc----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 66788999999999999999999999999987553 34678999999999999999999999999999997666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 046615 245 VAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEF 324 (409)
Q Consensus 245 ~sliakLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~ 324 (409)
+||||||.|++++|++|.+.++...+...|.+.|..|++.|.++|.|+||||+|+++.+ +++|||+||||+.|.++
T Consensus 209 -~liAKLa~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~ 284 (346)
T cd09240 209 -AIIAKLAAQAADYYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKA---QKKFGEEIARLQHALEL 284 (346)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hchHHHHHHHHHHHHHH
Confidence 59999999999999999999998777777889999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCC--CCCCCCccccccCcccc
Q 046615 325 LKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQ--TAPALPDFQLSLKPEDF 397 (409)
Q Consensus 325 lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~--~~p~Lp~~~l~~~p~~~ 397 (409)
++++++.++.+ .+++.+.+.|.+.|++++||||+|| |++||+ ++|+++...+ ++|.|+
T Consensus 285 ~~~a~~~~~~~-------------~~~~~l~~~i~~~l~~aekDNd~IY-~e~VP~~~~L~~i~~~~~-vk~~p~ 344 (346)
T cd09240 285 IKTAQSRAGEY-------------VDVKDFAAKISRALTAAKKDNDFIY-HDRVPDVKSLPPIGKAAL-AKPTPV 344 (346)
T ss_pred HHHHHHHhcch-------------hHHHHHHHHHHHHHHHHhhccCeEe-ccCCCCchhccCCcCccc-ccCCCC
Confidence 99999875432 1478999999999999999999555 999995 8888887766 698875
No 6
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=100.00 E-value=1.6e-66 Score=525.73 Aligned_cols=322 Identities=17% Similarity=0.124 Sum_probs=278.7
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHHH----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRRL----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQAL 95 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al 95 (409)
+.|| +|++++||+..||++||.++| ++.|++||+++++.. .. .+ -.+.+
T Consensus 9 l~ip-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~~LR~~~~~~~---------------~~-~~----~~~~l 67 (361)
T cd09239 9 LWLQ-LKSSGEFTFQPALKKYILENYGEDPELYSEELKSLEQLRQEAVNPP---------------RD-FE----GCSVL 67 (361)
T ss_pred cccC-CCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccCC---------------CC-hH----HHHHH
Confidence 6788 999999999999999999965 777999999976533 22 22 25578
Q ss_pred HHHHHHHHhhhhcCcCC---CCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCC
Q 046615 96 EDYLPILLGLVENGNQL---QDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVS 172 (409)
Q Consensus 96 ~~Yl~~L~gl~~k~~~l---~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s 172 (409)
.+||.+|..+..+++.. ..+|.|+|+|+|+ +.+++++|+.||++|||||||+|||++|.+ ++|.+
T Consensus 68 ~~Yy~qL~~l~~rfp~~~~~~~~v~F~W~d~~~-~~~~~~~~l~fEka~vlfNigal~sq~a~~-----------~~r~~ 135 (361)
T cd09239 68 KRYYGQLHLLQSRFPMGAGQEAAVPFTWTDIFS-GSEVTHEDIKFEEASVLYNIGALHSQLGAS-----------DKRDS 135 (361)
T ss_pred HHHHHHHHHHHhcCCCCccccccceeeeecccC-CCchhhhhHHHHHHHHHHHHHHHHHHHHHh-----------ccCCC
Confidence 89999999999886433 1479999999998 478999999999999999999999999932 56788
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 046615 173 VECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFA 252 (409)
Q Consensus 173 ~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA 252 (409)
+||+|+||++||+|||+|+||++++++... ++||++++|++|..+||||||||+|+|||.+++++ +||||||
T Consensus 136 ~~glK~A~~~fq~AAG~F~~l~e~~~~~~~-------~~Dl~~~~l~~L~~lmLAQAQEc~~~Kai~d~~k~-sliAKLA 207 (361)
T cd09239 136 EEGMKVACTHFQCAAWAFAYLREHYPQVYG-------AVDMSSQLLSFNYSLMLAQAQECLLEKSLLDNRKS-HITAKVS 207 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCC-------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-HHHHHHH
Confidence 999999999999999999999999986321 25999999999999999999999999999997666 5999999
Q ss_pred HHHHHHHHHHHHHHhcCC-----CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHH
Q 046615 253 CELVKYWHEAQENIVNLP-----LANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKE 327 (409)
Q Consensus 253 ~e~s~~Y~~A~~~l~~~~-----i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lke 327 (409)
+|++++|++|.+.+++.. +...|.+.|+.|++.|+++|+|+||||+|+++.+ +++|||+||||+.|.+.+++
T Consensus 208 ~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~---~~k~Ge~Ia~L~~A~~~l~~ 284 (361)
T cd09239 208 AQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEE---QQKMGERVAYYQLANDKLEE 284 (361)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998743 3456888999999999999999999999999999 99999999999999999999
Q ss_pred HHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccC--CCCCCCCccccccCccccCC
Q 046615 328 SKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMIL--QTAPALPDFQLSLKPEDFIL 399 (409)
Q Consensus 328 a~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp--~~~p~Lp~~~l~~~p~~~~l 399 (409)
|.+.++.... .-.+..+++.+.+.|.+.|++++||||+|| |++|| .++|.++...+ ++|.||+-
T Consensus 285 a~~~~~~~~~------~~~~~~~~~~l~~~i~~~l~~aekDNd~IY-he~VP~~~~L~~i~~~~~-vk~~p~~~ 350 (361)
T cd09239 285 AIKNAKGQPD------TVNLQEALSFTMDVIGGKRNSAKKENDFIY-HEAVPKLDTLQAVKGANL-VKGIPFSP 350 (361)
T ss_pred HHHHHhCCCc------chhHHHHHHHHHHHHHHHHHHHhcccCcee-ecCCCChhhcCCCcCccc-cccCCCCc
Confidence 9998764211 113567889999999999999999999555 99999 88888887777 68888764
No 7
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=100.00 E-value=1.4e-63 Score=499.60 Aligned_cols=324 Identities=35% Similarity=0.535 Sum_probs=284.3
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHHH-----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRRL-----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQA 94 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~~-----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~a 94 (409)
+.+| ||++.+||+..+|+++|++.+ +++++.||++++... .++ +...+++++
T Consensus 2 i~~p-lk~t~~vd~~~~l~~~i~~~~~~~~~~~~~~~l~~~~~lR~~~~~~~--------------~~~--~~~~~~~~~ 64 (345)
T cd09034 2 IGLP-LKKTKEVDVKVPLSKFIPKNYGELEATAVEDLIEKLSKLRNNIVTEQ--------------NND--TTCENLLEA 64 (345)
T ss_pred CCCC-CCCCceeeechhhHHHhhHhhCcccchhhHHHHHHHHHHHHHHHhhc--------------cCC--cchHHHHHH
Confidence 4688 999999999999999999864 778999999998876 332 145678999
Q ss_pred HHHHHHHHHhhhhcCc--CCCCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCC
Q 046615 95 LEDYLPILLGLVENGN--QLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVS 172 (409)
Q Consensus 95 l~~Yl~~L~gl~~k~~--~l~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s 172 (409)
+.+||++|.+|+.+++ ..+.+|.|+|+|+|+.+.++.. |++||++|||||+|++++++|+. +.+.+
T Consensus 65 l~~Y~~~L~~l~~~~~~~~~~~~i~F~W~d~~~~~~~~~~-~l~fE~~~vLfn~aa~~s~~a~~-----------~~~~~ 132 (345)
T cd09034 65 LKEYLPYLLGLEKKLPFQKLRDNVEFTWTDSFDTKKESAT-SLRYELLSILFNLAALASQLANE-----------KLITG 132 (345)
T ss_pred HHHHHHHHHHHHhcCCcccccccceeEeecccCCCcchhh-hHHHHHHHHHHHHHHHHHHHHHh-----------ccCCC
Confidence 9999999999998875 5567899999999986566666 99999999999999999999953 33344
Q ss_pred -hhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 046615 173 -VECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRF 251 (409)
Q Consensus 173 -~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakL 251 (409)
+|++|+|+++||+|||+|+||++++++..+. .+|+||+++++.+|..+||||||||+|+||+.+++.+.+|||||
T Consensus 133 ~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~----~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~~~~~liakL 208 (345)
T cd09034 133 SEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPD----ELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARL 208 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccccCCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 7899999999999999999999999885543 27789999999999999999999999999999974566699999
Q ss_pred HHHHHHHHHHHHHHHhcCCC--CCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 046615 252 ACELVKYWHEAQENIVNLPL--ANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESK 329 (409)
Q Consensus 252 A~e~s~~Y~~A~~~l~~~~i--~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~ 329 (409)
|+|++++|++|.+.+++++. .+.|.++|..|+++|..+|+|+||||+|+++.+ .++||++|+||+.|...++++.
T Consensus 209 a~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e---~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 209 ACEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDE---ANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764 367999999999999999999999999999999 8899999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCCC--CCCCCccccccCcc
Q 046615 330 MTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQT--APALPDFQLSLKPE 395 (409)
Q Consensus 330 ~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~~--~p~Lp~~~l~~~p~ 395 (409)
+.++.|.. .++++++++.++|++.+++++||||.|| +++||+. +|+++...+ ++|.
T Consensus 286 ~~~~~~~~--------~~~~~~~~l~~~i~~~l~~~~kdNd~Iy-~e~VP~~~~Lp~i~~~~~-v~~~ 343 (345)
T cd09034 286 RLCKSFLL--------DVWGNLKKLKEKIEKELEKAERENDFIY-FEEVPPEDPLPEIKGALL-VKPP 343 (345)
T ss_pred HHHHhccc--------hHHHHHHHHHHHHHHHHHHHHhhhhHhh-cccCCCCCCCCccccccc-cCCC
Confidence 99887652 5789999999999999999999999665 8889965 777776666 4544
No 8
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=100.00 E-value=6.6e-62 Score=489.11 Aligned_cols=303 Identities=18% Similarity=0.148 Sum_probs=265.7
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHHH----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRRL----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQAL 95 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al 95 (409)
+.|| ||++++||+.+||++||.++| +.+|+.||++++... .+ .++ ++.+
T Consensus 2 i~l~-lK~T~~vd~~~~L~~yI~~~Y~e~~~~y~~~l~~l~~LR~~~~~~~---------------~~-~~g----~~~L 60 (350)
T cd09244 2 IPLG-LKETKEIDFMEPFKDFILEHYSEDPSLYEDEIADFTDLRQAMRTPS---------------RD-EAG----IELL 60 (350)
T ss_pred CCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhCCC---------------CC-hhH----HHHH
Confidence 5688 999999999999999999865 777999999876543 22 232 5578
Q ss_pred HHHHHHHHhhhhcCcCCC--CccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCCh
Q 046615 96 EDYLPILLGLVENGNQLQ--DKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSV 173 (409)
Q Consensus 96 ~~Yl~~L~gl~~k~~~l~--~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~ 173 (409)
.+||.+|..|..+++..+ .+|.|+|+|+|++ .+++++|+.||++|||||||+|||++|.. ++|.++
T Consensus 61 ~~YY~qL~~le~RFp~~~~~~~v~F~W~Ds~~~-~~~~q~sl~fEkasVLFNigAl~Sq~aa~-----------~~r~~~ 128 (350)
T cd09244 61 FEYYNQLYFVERRFFPPDRSLGIYFHWYDSLTG-VPSVQRSVAFEKASVLFNIGALYTQIGAK-----------QDRTTE 128 (350)
T ss_pred HHHHHHHHHHHhcCCCccccccceeeeecccCC-CccccccHHHHHHHHHHHHHHHHHHHHHH-----------hccCCh
Confidence 899999999998875443 4799999999986 78999999999999999999999999932 667889
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHH-----
Q 046615 174 ECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSV-NATVAV----- 247 (409)
Q Consensus 174 e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~-k~~~sl----- 247 (409)
||+|+||++||+|||+|+||++++.+ .+++||++++|++|+.+||||||||+|+|||.++ ++++ +
T Consensus 129 eglK~A~~~Fq~AAG~F~~l~e~~~~--------~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~~~k~~-~~~~~~ 199 (350)
T cd09244 129 EGIEAAVDAFQRAAGAFNYLRENFSN--------APSMDLSPEMLEALIKLMLAQAQECVFEKLVLPGEDSKD-IQACLD 199 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-hhHHHH
Confidence 99999999999999999999999764 2456999999999999999999999999999887 4544 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHH
Q 046615 248 KRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKE 327 (409)
Q Consensus 248 iakLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lke 327 (409)
|||||+|++++|++|.+.++...+...|.+.|+.+++.|++||+|+||||+|+.+.+ ++++|++||+|+.|..++++
T Consensus 200 lAklA~qv~~~Y~~a~~~~~~~~~~~~i~~~W~~~v~~K~~~f~AlA~y~~a~~l~~---~~~~g~~~a~L~~A~~~~e~ 276 (350)
T cd09244 200 LAQEAAQVSDCYSEVHKLMNQEPVKDYIPYSWISLVEVKSEHYKALAHYYAAMGLLL---EERRLLGKAHLKEALLLHEE 276 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987667778999999999999999999999999999999 99999999999999999999
Q ss_pred HHH---HhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCC
Q 046615 328 SKM---TCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQ 380 (409)
Q Consensus 328 a~~---~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~ 380 (409)
|.+ .|+.+. ....+...++..+.++...++..++|||++| ++-+|+
T Consensus 277 a~~~~~~c~~~~------~~~~l~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~p~ 325 (350)
T cd09244 277 ALRLHRMCRFLR------NVDSLQEVLKEAHDRSLNKYSSLEEEDDFSD-ALDAPD 325 (350)
T ss_pred HHHHHHHHhhhc------chHHHHHHHHHHHHHHHHHHHhhccccchhh-ccccCC
Confidence 999 577654 2567778888889999999999999999777 444553
No 9
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=100.00 E-value=2.5e-60 Score=487.46 Aligned_cols=359 Identities=17% Similarity=0.168 Sum_probs=283.8
Q ss_pred CCCCCCCchHHHhHhhHHHHHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHHHHHHHHHHhhhhcCc--
Q 046615 33 IPKPVDFAEPIGDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLVENGN-- 110 (409)
Q Consensus 33 ~~~~vdl~~~L~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al~~Yl~~L~gl~~k~~-- 110 (409)
.+.+|.|..-+..-=-..++...+..|.++.... |..+|.-...-.+++..++++|++||++|.+|+.+++
T Consensus 8 tTs~~sF~~~~~~~~~~~l~~~a~~~R~~lr~~l-------k~~k~~~~~~~~~~~~~~~~aL~~Ylp~L~~l~~~~~~~ 80 (413)
T cd09245 8 TTSSISFSDFFNSDSYPSLPLNATTARAVLRAAL-------KAHKRTPPGSQASNLLTVVKALEEYLPYLLAIDACLSHD 80 (413)
T ss_pred CCcccchhhhcCCCcccchhhHHHHHHHHHHHHH-------HhcccCCcccccccHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 3445556532222111247888999999998877 4444442112256678999999999999999997653
Q ss_pred --CCCCccceecccCCCCCc-----ccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC------CCccCChhhHH
Q 046615 111 --QLQDKLQFPWLNQEDDAE-----ETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDG------YQSKVSVECRR 177 (409)
Q Consensus 111 --~l~~~v~F~W~~a~~~~~-----~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg------~~~r~s~e~lK 177 (409)
.++..|.|+|+++|+++. .++++|++||++|||||||++|+++|++.+.+..+.++ +.++.++|++|
T Consensus 81 ~~~l~~~i~F~W~~tl~~~~~~~~~~~~~~sl~fE~a~VLfnla~l~S~~A~~~l~~~~~~~~~~~is~~~~~~~~e~lK 160 (413)
T cd09245 81 ELILKSEPTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLTYAYALSNLARSILAPLGAYETDRSISDASRKQRDERLK 160 (413)
T ss_pred hhcccccceeEeecccccCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHH
Confidence 455789999999997543 59999999999999999999999999887655432221 24678999999
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCccc-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC---------------C
Q 046615 178 ESIDMFLKAAGYLDFAVNNVLPQLPPEI-RKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDS---------------V 241 (409)
Q Consensus 178 ~A~~~f~~AAG~F~~l~~~vl~~~~~~~-~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~---------------~ 241 (409)
.|+++||+|||||+||+++++|.++.+. ...+|+||+++|++||+.|||||||||+|+|++.. +
T Consensus 161 ~A~~~l~~AAGvf~~L~~~~l~~~~~~~~~~~~~~DLs~~~l~aL~~L~LAqAQel~~~K~~~~~~~~d~~~~~~ap~~~ 240 (413)
T cd09245 161 AATKLLCKAAGIFDYLATRVLPQWESNRGGAPPPPDLSPEVLSALSSLALAEATLLAVRKLDPYPAAVDKDWMTPGPPLP 240 (413)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhcccCcccc
Confidence 9999999999999999999999876533 35678999999999999999999999999998862 1
Q ss_pred CC--chHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHH
Q 046615 242 NA--TVAVKRRFACELVKYWHEAQENIVNLPL---ANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAA 316 (409)
Q Consensus 242 k~--~~sliakLA~e~s~~Y~~A~~~l~~~~i---~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa 316 (409)
|. +++||||||+|+++||++|.+.++..+. ...|+++|+.|+++|+++|+|+||||+|+++++ +++||||||
T Consensus 241 k~~~s~sLiAKLa~~~~~~y~~A~~~l~~~~~~~~~~~i~~~~~~yl~~k~~~~~A~A~~~~g~d~~e---~~k~GeaIa 317 (413)
T cd09245 241 KVHPSAHLLARLCLAASEHAESARALLSTPGSKRGSGEVSEELLRYLSDLRRVARALACKFLGIDAGE---NGKVGEAIG 317 (413)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhHh---cCCHHHHHH
Confidence 22 3479999999999999999999998763 446889999999999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHHHHHhhh-hcCCCCC-------CCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCCCC---CCC
Q 046615 317 ALRAADEFLKESKMTCES-FHMTPPL-------SRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTA---PAL 385 (409)
Q Consensus 317 ~L~~A~~~lkea~~~~~~-f~~~~~~-------~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~~~---p~L 385 (409)
||+.|.+++++++..... ....-+. .+....+.+++.+.+.|.+.+++++||||.|| +|+||+.- -.|
T Consensus 318 ~L~~A~~~L~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~e~~~i~~~l~~~~K~ND~Iy-~q~VP~~~~L~~~~ 396 (413)
T cd09245 318 WLRAAKKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKKMNDTVS-FQPVPPSSELQSSM 396 (413)
T ss_pred HHHHHHHHHHHhhhccccccccccchhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHhcceee-eecCCChHhhhhcC
Confidence 999999999888764210 0000000 01112125788999999999999999999666 99999543 489
Q ss_pred CccccccCccccCCCCC
Q 046615 386 PDFQLSLKPEDFILPSV 402 (409)
Q Consensus 386 p~~~l~~~p~~~~lP~~ 402 (409)
|...-++.|.||..|+.
T Consensus 397 P~Gr~i~~~~~~~~p~~ 413 (413)
T cd09245 397 PSGREAHTAKPYTPPPS 413 (413)
T ss_pred CCcccccCCCCCCCCCC
Confidence 98887899999999863
No 10
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=100.00 E-value=4.4e-59 Score=471.90 Aligned_cols=322 Identities=24% Similarity=0.266 Sum_probs=262.2
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHHH----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRRL----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQAL 95 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al 95 (409)
+.|| ||+|++|||.++|++||.+++ +++++.||+++.+.. . .+ .+.+..+
T Consensus 3 ~~lp-lK~t~~vd~~~~l~~~i~~~y~~~~~~~~~~l~~l~~lR~~~~~~~--------------~---~~--~~~~~~l 62 (377)
T PF03097_consen 3 LSLP-LKKTKEVDLKKPLKKYISSHYGEDPDSFDEDLKELDKLRQDARNPQ--------------S---PS--ESGLKLL 62 (377)
T ss_dssp --------BEEE-CHHHHHHHHHHHCSSCCHCCHHHHHHHHHHHHHHHTSS------------------SS--HHHHHHH
T ss_pred CCCC-CCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccC--------------C---Cc--hhHHHHH
Confidence 5688 999999999999999999864 888999999986542 1 22 4667889
Q ss_pred HHHHHHHHhhhhcCcCCCCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhh
Q 046615 96 EDYLPILLGLVENGNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVEC 175 (409)
Q Consensus 96 ~~Yl~~L~gl~~k~~~l~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~ 175 (409)
.+|+++|.+++.+++.-...|.|+|+|+|++..+++++|+.||++|||||+|++++++|.. +++.++++
T Consensus 63 ~~Y~~~L~~l~~~~p~~~~~i~F~W~d~~~~~~~~~~~~~~fE~a~vL~N~aa~~s~~a~~-----------~~~~~~~~ 131 (377)
T PF03097_consen 63 EEYYPQLESLEKRFPSDQIQISFTWSDSLSTGKPVSQSSLAFEKACVLFNIAALYSQLAAS-----------QNRSTDEG 131 (377)
T ss_dssp HHHHHHHHHHCCCSCSSCCTT-EEEE-TTSTTSEEEESSHHHHHHHHHHHHHHHHHHHHHH-----------S-TTSHHH
T ss_pred HHHHHHHHHHHHhcccccceeeEeeeccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHh-----------cccccchh
Confidence 9999999999988753344699999999976689999999999999999999999999954 34468899
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 046615 176 RRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACEL 255 (409)
Q Consensus 176 lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e~ 255 (409)
+|+|+++||+|||+|+||+++... .+|+||++++|.+|..+||||||||+|+||+.++++. ++|||||+++
T Consensus 132 ~k~A~~~fq~AAg~f~~l~~~~~~--------~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~~~~~~-~liAKLa~~~ 202 (377)
T PF03097_consen 132 LKEACNYFQRAAGIFQYLRENFKD--------SPSPDLSPEVLSALSNLMLAQAQECFYEKAIADKKKP-SLIAKLAAQA 202 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSS---------SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTTG-H-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--------cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHccCch-HHHHHHHHHH
Confidence 999999999999999999999432 3456999999999999999999999999999985555 5999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046615 256 VKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESF 335 (409)
Q Consensus 256 s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f 335 (409)
+++|++|.+.+...+....+.+.|..++++|..+|.|+||||+|+.+.+ +++||++|+||+.|+..++++.+.++.+
T Consensus 203 ~~~Y~~a~~~l~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~---~~~~G~aia~L~~A~~~l~~a~~~~~~~ 279 (377)
T PF03097_consen 203 SELYDEAHEALQSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEE---AKKYGEAIARLRRAEEALKEASKLAKKC 279 (377)
T ss_dssp HHHHHHHHHHHTTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999876556778899999999999999999999999999 9999999999999999999999998765
Q ss_pred cCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCCC--CCCCCccccccCccccC
Q 046615 336 HMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQT--APALPDFQLSLKPEDFI 398 (409)
Q Consensus 336 ~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~~--~p~Lp~~~l~~~p~~~~ 398 (409)
+..+.....++.+.+.|.+.+++++||||+|| +++||+. +|+++...+ ++|.++.
T Consensus 280 ------~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~Iy-~e~VP~~~~L~~~~~~~~-vk~~~~~ 336 (377)
T PF03097_consen 280 ------SKSSSLQDDLKSLLDQIQEKLEKAEKDNDFIY-HEPVPSESELPPIKPASM-VKPIPPP 336 (377)
T ss_dssp ------SCCSTTTHHHHHHHHHHHHHHHHHHHHHHHTT---S--SCGGSGGS-SSST-T----HH
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHhcccccc-cccCCCcccccccccccc-cCCCCCc
Confidence 34678889999999999999999999999666 9999965 555554444 7766543
No 11
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=100.00 E-value=1.4e-57 Score=458.50 Aligned_cols=279 Identities=19% Similarity=0.199 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHhhhhcC--cCCCCccceecccCCCC---CcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 046615 90 DLQQALEDYLPILLGLVENG--NQLQDKLQFPWLNQEDD---AEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTST 164 (409)
Q Consensus 90 ~l~~al~~Yl~~L~gl~~k~--~~l~~~v~F~W~~a~~~---~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~ 164 (409)
+....|..|++.|.++..++ ..++..|.|+|+|+|++ +..+++.|++||++|||||+|++++++|...
T Consensus 58 ~yl~~L~~~~~~L~~~~~~~~~~~l~~~i~F~W~~~l~~~~~~~~~~~~sl~fE~~~vLfn~aa~~s~~A~~~------- 130 (346)
T cd09247 58 QYLPYLEGYLPALENLVNHRDKVQLNEQLSFRWTSGLGSSKGPKAFQSDSLRFELGMVLFLYGAALRERASEV------- 130 (346)
T ss_pred hHHHHHHHHHHhhccCCccchHHhhcccCceeeecccCCCCCCceeeccchHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 45677888888888887664 36889999999999986 3567889999999999999999999999421
Q ss_pred CCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccc-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 046615 165 DGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEI-RKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNA 243 (409)
Q Consensus 165 dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~-~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~ 243 (409)
..+|++|+|+++||+|||||+||.++++|.++.+. ...+|+||+++++++|+.|||||||||+|+||++++++
T Consensus 131 ------~~~e~~K~A~~~l~~AAG~f~~l~~~~l~~~~~~~s~~~~~~Dl~~~~~~aL~~l~LAqAQe~~~~KAi~~~~~ 204 (346)
T cd09247 131 ------LPTEDFKEAATHLRRAAGVFEFLAHDELPRLRGALSADERPPECTPSLALAMSLLCLAEAQAVTARKAEEKGTS 204 (346)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 12278999999999999999999999999876544 46678999999999999999999999999999999755
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHH
Q 046615 244 TVAVKRRFACELVKYWHEAQENIVNLPL-ANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAAD 322 (409)
Q Consensus 244 ~~sliakLA~e~s~~Y~~A~~~l~~~~i-~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~ 322 (409)
. +||||||+|+++||++|.+.+++.+- ...+.++|+.|+++|..+|+|.||||+|+++++ +++|||+||+|+.|.
T Consensus 205 ~-sliAKLa~~~~~~y~~A~~~l~~~~~~~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~---~~k~GeaIa~L~~A~ 280 (346)
T cd09247 205 P-SLLAKLHYGATQFLEEAKNVLRSLATDLKDLDPRFLRFISSCIALHEARSQLYLARRLKE---AGHIGVAVGVLREAL 280 (346)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHccCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHH
Confidence 5 59999999999999999999997641 134668999999999999999999999999999 889999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCC--CCCCCCccccccCccccC
Q 046615 323 EFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQ--TAPALPDFQLSLKPEDFI 398 (409)
Q Consensus 323 ~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~--~~p~Lp~~~l~~~p~~~~ 398 (409)
+.++++++.+..+ ...+++.+...|++.+++++||||+|| ||+||+ ++|.++...+ ++|.||.
T Consensus 281 ~~l~~~~~~~~~~-----------~~~~~~~~~~~i~~~l~~a~kdNd~IY-~e~VP~~~~L~~~~~~~~-vk~ip~~ 345 (346)
T cd09247 281 RNLKKKLPGSDIS-----------SPVIFRDERAEVATLLQKYEKENEVIY-FEKVPDIDELPLPEGKVI-VKPVPYK 345 (346)
T ss_pred HHHHHhhccCchh-----------HHHHHHHHHHHHHHHHHHHHhccCeEE-eecCCCccccCCCccccc-eeecCCC
Confidence 9999998765422 256889999999999999999999555 999994 4777665555 7998885
No 12
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=100.00 E-value=4.6e-56 Score=448.44 Aligned_cols=301 Identities=17% Similarity=0.107 Sum_probs=252.7
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHHH----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRRL----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQAL 95 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al 95 (409)
+.|| ||++++|||..||++||++.| +++|+.||+++ ... .++ .++ ++.|
T Consensus 2 i~lp-lK~T~~vDl~~pL~~yI~~~Y~q~~~~y~~dl~~l~~LR~~~-~~~--------------~~~-~sg----le~L 60 (384)
T cd09248 2 IPLG-LKETKELDLPTPLKELISEHFGEDGTSYEAEIRELEDLRQAM-RTP--------------SRS-EAG----LELL 60 (384)
T ss_pred CCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-cCC--------------CCC-hhH----HHHH
Confidence 5689 999999999999999999965 77899999873 323 232 332 5578
Q ss_pred HHHHHHHHhhhhcCcCCC--CccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCCh
Q 046615 96 EDYLPILLGLVENGNQLQ--DKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSV 173 (409)
Q Consensus 96 ~~Yl~~L~gl~~k~~~l~--~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~ 173 (409)
..||.+|..|..+++..+ .+|.|+|+|+|++ .+++++|+.||++|||||||++|||+|.+ ++|.++
T Consensus 61 ~~YY~qL~~Le~RFp~~~~~~~v~FtW~Daf~~-~~~~q~sl~FEKasVLFNigAL~Sqlaa~-----------~~r~t~ 128 (384)
T cd09248 61 MAYYNQLCFLDARFFPPAKSLGLFFHWYDSLTG-VPAQQRALAFEKGSVLFNIGALHTQIGAR-----------QDRSCT 128 (384)
T ss_pred HHHHHHHHHHHhcCCCCcccccceeeeeccCCC-CccccccHHHHHHHHHHhHHHHHHHHHhh-----------ccCCCh
Confidence 899999999998874332 4799999999986 68999999999999999999999999932 778899
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCCchH
Q 046615 174 ECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAI-------DSVNATVA 246 (409)
Q Consensus 174 e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi-------~~~k~~~s 246 (409)
||+|.||++||+|||+|+||++++.+ .|++||++++|.+|+.+||||||||+|+||| .+++++ +
T Consensus 129 eGlK~A~~~FQ~AAG~F~~L~e~~~~--------~Ps~Dms~~~L~~L~~LMLAQAQEC~~eKail~~~~~~~d~~k~-~ 199 (384)
T cd09248 129 EGTRRAIDAFQRAAGAFSLLRENFSN--------APSPDMSTASLSMLEQLMVAQAQECIFEGLLLPLLATPQDFFAQ-L 199 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchh-h
Confidence 99999999999999999999999653 3457999999999999999999999999999 555555 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCC--------------------
Q 046615 247 VKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGK-------------------- 306 (409)
Q Consensus 247 liakLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~-------------------- 306 (409)
+|||||+|++++|++|++.++...++..|.+.|+.+++.|++||+|+||||+|+++.+..
T Consensus 200 ~iAKlAaQvs~~Y~~a~~~~~~~~~~~~i~~~W~~~v~~K~~hF~AlA~y~~A~~~~~~~~~~~~~~~~~e~~~~~~~~~ 279 (384)
T cd09248 200 QLAQEAAQVAAEYRLVHRTMAQPPVRDYVPFSWTALVHVKAEHFCALAHYHAAMALCDSSPASEGELATQEKAFLQPHTS 279 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHhccCCCC
Confidence 899999999999999999999766777798899999999999999999999999977421
Q ss_pred ------------CCCcHHHHHHHHHHHHHHHHHHHHH---hhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCC
Q 046615 307 ------------TEGCSEMAAAALRAADEFLKESKMT---CESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPG 371 (409)
Q Consensus 307 ------------~~~k~GeaIa~L~~A~~~lkea~~~---~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~ 371 (409)
+..+.|+ |+|+.|..-.+||.|. |+.-. ....+...++.-+++....+...++|||+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~--ahl~~a~~~~eea~r~~~~c~~l~------~~~~l~~~l~~~~~~s~~~~~~~~~~~d~ 351 (384)
T cd09248 280 QPEGPSLPQEPEERRKLGK--AHLKRAILGQEEALRLHALCRILR------KVDLLQAVLTQALRRSLAKYSELDREDDF 351 (384)
T ss_pred CCCccccccChHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHhhhccccch
Confidence 1245666 8999999999999977 44322 12344556677788888999999999997
Q ss_pred Ccccc
Q 046615 372 PQNYE 376 (409)
Q Consensus 372 iy~~~ 376 (409)
++..+
T Consensus 352 ~~~~~ 356 (384)
T cd09248 352 FETGE 356 (384)
T ss_pred hhccc
Confidence 77665
No 13
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=100.00 E-value=3.5e-52 Score=419.97 Aligned_cols=300 Identities=17% Similarity=0.142 Sum_probs=241.0
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHHH----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRRL----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQAL 95 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al 95 (409)
+.|| ||++++|||+.||++||++.| +++|+.||+++ +.. ..+ .++ ++.+
T Consensus 2 i~lp-lK~T~~VD~~~pL~~yI~~~Y~q~~~~y~~dl~~l~~LR~~~-~~~--------------~~~-~sg----~e~L 60 (385)
T cd09249 2 IPLG-LKETKDVDFSVPLKDFILEHYSEDGSEYEDEIADLMDLRQAC-RTP--------------SRD-EAG----VELL 60 (385)
T ss_pred CCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-cCC--------------CCC-hhH----HHHH
Confidence 4578 999999999999999999865 77799999883 322 233 333 4578
Q ss_pred HHHHHHHHhhhhcCcCC--CCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCCh
Q 046615 96 EDYLPILLGLVENGNQL--QDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSV 173 (409)
Q Consensus 96 ~~Yl~~L~gl~~k~~~l--~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~ 173 (409)
..||.+|..+..+++.. ..+|.|+|+|+|++ .++++.|+.||++|||||||+|||++|.+ ++|.++
T Consensus 61 ~~YY~qL~~Le~RFp~~~~~~~v~FtW~Dsf~~-~~~~q~sl~fEkasVLFNigAl~Sqlaa~-----------~~r~t~ 128 (385)
T cd09249 61 MSYFSQLGFLENRFFPPTRQMGILFTWYDSFTG-VPVSQQNLLLEKASILFNIGALYTQIGTR-----------CNRQTQ 128 (385)
T ss_pred HHHHHHHHHHHhhCCCCcccccceeeeeccCCC-CccccccHHHHHHHHHHhHHHHHHHHHHH-----------hccCCc
Confidence 89999999999987543 24789999999985 78999999999999999999999999932 667889
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH-----H
Q 046615 174 ECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAV-----K 248 (409)
Q Consensus 174 e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sl-----i 248 (409)
||+|+||++||+|||+|+||++++.+ .+++||++++|++|+.+||||||||+|+|++.++++++ + |
T Consensus 129 eGlK~A~~~FQ~AAG~F~~L~e~~~~--------~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~~k~~-~~~i~ki 199 (385)
T cd09249 129 AGLESAVDAFQRAAGVLNYLKETFTH--------TPSYDMSPAMLSVLVKMMLAQAQECLFEKISLPGIRNE-FFTLVKM 199 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccC--------CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-hhHHHHH
Confidence 99999999999999999999999653 24569999999999999999999999999999876665 5 8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccC--CC---CCcHHHH---------
Q 046615 249 RRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEG--KT---EGCSEMA--------- 314 (409)
Q Consensus 249 akLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~--~~---~~k~Gea--------- 314 (409)
||||+|++++|++|.+.++..++.+.|.+.|+.+++.|++||+|+||||+|+++.+- +. +.+--.+
T Consensus 200 AklAaqvs~~Y~~a~~al~s~~~~~~i~~~W~~~v~~K~~~f~AlA~Y~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (385)
T cd09249 200 AQEAAKVGEVYMQVHTAMNQAPVKENIPYSWSSLVQVKAHHYNALAHYFVATLLIDHQLNPSDDEDKQEKALSQLYDHMP 279 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHHhcc
Confidence 999999999999999999977777789999999999999999999999999999842 11 1111111
Q ss_pred -------------------HHHHHHHHHHHHHHHHH---hhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCC
Q 046615 315 -------------------AAALRAADEFLKESKMT---CESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGP 372 (409)
Q Consensus 315 -------------------Ia~L~~A~~~lkea~~~---~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~i 372 (409)
=|+|+.|...-+||.|. |+.-- ....+...++.-+++=...+..-++|.|+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~k~hl~~a~~~~eea~r~~~~c~~l~------~~~~l~~vl~~~~~~s~~~~~~~~~~~~~~ 353 (385)
T cd09249 280 EGLTPLTILKNKQQRRLLGKAHLRRAIMHHEEAIREASLCKKLR------NIDVLQEVLSAAHNRSLLKYAQHQKEDDFL 353 (385)
T ss_pred ccCChhhhhcccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhccccchh
Confidence 16788888888888876 44211 012334444544555566777788888844
Q ss_pred c
Q 046615 373 Q 373 (409)
Q Consensus 373 y 373 (409)
.
T Consensus 354 ~ 354 (385)
T cd09249 354 D 354 (385)
T ss_pred h
Confidence 3
No 14
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=100.00 E-value=5.3e-43 Score=378.78 Aligned_cols=317 Identities=20% Similarity=0.239 Sum_probs=270.6
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHHH----------HHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRRL----------VERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQAL 95 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al 95 (409)
+.+| ++++..+|+.+||..||...| ++.+..||+.+.+.. .+ .++ ...+
T Consensus 6 ~~~~-lK~t~e~d~~~~l~~~i~~~y~~~~~~~~~~i~~~~~lR~~a~~~~---------------~~-~~~----~~~l 64 (714)
T KOG2220|consen 6 LPIP-LKKTSEVDFLKPLSKLIQLSYGESQENRNDAIEKLEKLRNNANGVP---------------KP-SEG----LEVL 64 (714)
T ss_pred cCcc-cccCCccchhhhHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCC---------------cc-hhh----hHHH
Confidence 7799 999999999999999999754 777888898875543 22 222 3367
Q ss_pred HHHHHHHHhhhhcCcCCCCccc-eecccCCCCC-cccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCCh
Q 046615 96 EDYLPILLGLVENGNQLQDKLQ-FPWLNQEDDA-EETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSV 173 (409)
Q Consensus 96 ~~Yl~~L~gl~~k~~~l~~~v~-F~W~~a~~~~-~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~ 173 (409)
..||.+|+-+..+.+....++. |+|+|+|.+. ..+++.++.||++|||||||++++++|. . +.+.++
T Consensus 65 ~~yy~qL~~l~~r~p~~~~~~~~F~W~d~~~~~~~~~~~~~L~fEka~vLfni~~l~s~iaa----------~-~~~~~~ 133 (714)
T KOG2220|consen 65 KRYYGQLCYLESRFPMSENEIEEFTWKDAFDSGAKKVTQISLGFEKACVLFNIAALYSQIAA----------H-QSRETV 133 (714)
T ss_pred HHHHHHHHHHHHhcCcccccccceeeeecccCCccceeeccchhhHHHHHHHHHHHHHHHHH----------H-hccCch
Confidence 7999999999988766556566 9999999865 8999999999999999999999999993 2 567889
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 046615 174 ECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFAC 253 (409)
Q Consensus 174 e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~ 253 (409)
|++|.||.+||.|||+|.|++++.+.. .+.+|++++++.++..+|+||||||++.+++.++++.. +|+||++
T Consensus 134 d~~k~a~~~fq~aagaf~~l~~~~~~~-------~~~~d~~~~~l~~~~~l~~AqAQec~f~ks~~d~~~~~-~iaKis~ 205 (714)
T KOG2220|consen 134 DGYKAAIAHFQAAAGAFRYLSRDALGV-------EPLVDLSSLTLVFLRFLMLAQAQECFFYKSLTDNPKPS-IIAKLSA 205 (714)
T ss_pred HHHHHHHHHHHHHHHHHHhhcHHhcCc-------ccccccCHHHHHHHHHhhHHhhchheeehhhcCCcchH-HHHHHHH
Confidence 999999999999999999999444331 24469999999999999999999999999999976665 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Q 046615 254 ELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCE 333 (409)
Q Consensus 254 e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~ 333 (409)
|++.||.+|++.+.. .+.+.|.+.|+.++..|++.|.+++|||+|..+.+ .+++||+|++|+.+...+++|++...
T Consensus 206 q~~~fy~~Al~~~~~-~~~~~~~~~w~~~~~~k~~~~~~v~~~~~~~~~~e---~~~~ge~i~~l~~~~~~l~~Aqk~~~ 281 (714)
T KOG2220|consen 206 QVVLFYEEALKAQIG-ARADRITKEWLTLVAAKFARFAGVAYYYQSLFLHE---KSKDGEAIARLQLSLLMLSEAQKCSF 281 (714)
T ss_pred HHHHHHHHHHHHHHH-hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999 45678999999999999999999999999999999 99999999999999999999998754
Q ss_pred hhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccC--CCCCCCCccccccCccccCCC
Q 046615 334 SFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMIL--QTAPALPDFQLSLKPEDFILP 400 (409)
Q Consensus 334 ~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp--~~~p~Lp~~~l~~~p~~~~lP 400 (409)
+. .+.+++.+ ..|...+++++||||+| ||++|| .++|.+++..+ ++|.+++-|
T Consensus 282 ~~--------~~~~~~~~----~~~~~~lk~a~kdNdFI-yhe~vp~~~~l~~~~~~~~-vkp~~~~~l 336 (714)
T KOG2220|consen 282 GE--------FTDVIESL----SSLEKALKEAKKDNDFI-YHERVPKVSELPPLKAAQL-VKPLPWAVL 336 (714)
T ss_pred cc--------chhHhhhh----hHHHHHHHhhhcccchh-hhcccccccccCCcchhHh-hcCCCcccc
Confidence 31 22333333 88999999999999955 499999 88899988777 888887654
No 15
>KOG2220 consensus Predicted signal transduction protein [General function prediction only]
Probab=95.96 E-value=0.071 Score=59.43 Aligned_cols=262 Identities=16% Similarity=0.093 Sum_probs=149.1
Q ss_pred CCCCCCCCCCchHHHhHhhHHHH-HHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 046615 30 GLRIPKPVDFAEPIGDELSRRLV-ERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLVEN 108 (409)
Q Consensus 30 ~lr~~~~vdl~~~L~~~I~~~~~-~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al~~Yl~~L~gl~~k 108 (409)
||.+...++-..+|...|..... +.-..+.+.+..+. .-+-+.+-.+|..-.++.+ -++.. .++..+..++..
T Consensus 107 ~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq-~aagaf~~l~~~~~~~~~~--~d~~~---~~l~~~~~l~~A 180 (714)
T KOG2220|consen 107 GFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQ-AAAGAFRYLSRDALGVEPL--VDLSS---LTLVFLRFLMLA 180 (714)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HHHHHHHhhcHHhcCcccc--cccCH---HHHHHHHHhhHH
Confidence 56777777777777777776543 33333333332221 0000011111111112122 12222 455555555422
Q ss_pred CcCCCCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhh
Q 046615 109 GNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAG 188 (409)
Q Consensus 109 ~~~l~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG 188 (409)
. .-.+-| +++..+ .+-..--+.++..+++||.++++.+.. -+ ..+...+.++.+..-++.++|
T Consensus 181 q---AQec~f--~ks~~d-~~~~~~iaKis~q~~~fy~~Al~~~~~--~~---------~~~~~~~w~~~~~~k~~~~~~ 243 (714)
T KOG2220|consen 181 Q---AQECFF--YKSLTD-NPKPSIIAKLSAQVVLFYEEALKAQIG--AR---------ADRITKEWLTLVAAKFARFAG 243 (714)
T ss_pred h---hchhee--ehhhcC-CcchHHHHHHHHHHHHHHHHHHHHHHH--hh---------hcccchhHHHHHHHHHHHHHH
Confidence 1 012233 666554 233444567999999999999999877 22 334777789999999999999
Q ss_pred HHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH---HHHHHHHHHHH-
Q 046615 189 YLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFAC---ELVKYWHEAQE- 264 (409)
Q Consensus 189 ~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~---e~s~~Y~~A~~- 264 (409)
++.|....+.+... .|..+-..-.+..+||+|||+|.-+.-+.-..+.+++-.+|.. +--..|.+..-
T Consensus 244 v~~~~~~~~~~e~~--------~~ge~i~~l~~~~~~l~~Aqk~~~~~~~~~~~~~~~~~~~lk~a~kdNdFIyhe~vp~ 315 (714)
T KOG2220|consen 244 VAYYYQSLFLHEKS--------KDGEAIARLQLSLLMLSEAQKCSFGEFTDVIESLSSLEKALKEAKKDNDFIYHERVPK 315 (714)
T ss_pred HHHHHHHHHhhhhh--------hhhHHHHHHHHHHHHHHHHHHhhcccchhHhhhhhHHHHHHHhhhcccchhhhccccc
Confidence 99999999876332 3899999999999999999999987211111122223232311 11123444332
Q ss_pred -----------HHhcCC---CCCCcchh-HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 046615 265 -----------NIVNLP---LANGWGDK-HRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESK 329 (409)
Q Consensus 265 -----------~l~~~~---i~~~w~~k-~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~ 329 (409)
.++..+ +...-.+. |..++-.+.+.+-++.....+-.+.+ .+++++.+.+.++.-.
T Consensus 316 ~~~l~~~~~~~~vkp~~~~~l~~~~~~~lF~~lvp~~v~~a~s~yse~ka~ll~~---------~~~~~~~~~q~l~~~l 386 (714)
T KOG2220|consen 316 VSELPPLKAAQLVKPLPWAVLLPSKAGDLFASLVPVEVAEALSAYSEEKADLLRE---------SIARLREANQLLNSVL 386 (714)
T ss_pred ccccCCcchhHhhcCCCcccccchhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhHHHHHHH
Confidence 222222 11111223 56677777777777776666666655 7888888888776654
Q ss_pred HH
Q 046615 330 MT 331 (409)
Q Consensus 330 ~~ 331 (409)
..
T Consensus 387 ~s 388 (714)
T KOG2220|consen 387 AS 388 (714)
T ss_pred HH
Confidence 33
No 16
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.34 E-value=6.7 Score=31.60 Aligned_cols=63 Identities=17% Similarity=0.107 Sum_probs=47.8
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVN 369 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdN 369 (409)
.|..|-..+..+|. .++++|||.+.+.|.+.+-.+.+.... ......+..+|.+-+.|++.-.
T Consensus 5 ~A~~~a~~AVe~D~---~gr~~eAi~~Y~~aIe~L~q~~~~~pD-------------~~~k~~yr~ki~eY~~Rae~Lk 67 (75)
T cd02682 5 MARKYAINAVKAEK---EGNAEDAITNYKKAIEVLSQIVKNYPD-------------SPTRLIYEQMINEYKRRIEVLE 67 (75)
T ss_pred HHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHhCCC-------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778889999 999999999999999999888776321 1123455788888888887543
No 17
>PF15506 OCC1: OCC1 family
Probab=74.93 E-value=2.7 Score=31.82 Aligned_cols=29 Identities=41% Similarity=0.612 Sum_probs=19.7
Q ss_pred CCccccccCCCCCCC-----------------cCCCCcCcEEEecC
Q 046615 1 MGCFISTPNAPGETR-----------------RKPKNVGEIAVFVP 29 (409)
Q Consensus 1 mgc~~s~~~~~~~~~-----------------~~~~~~~~~~~~vP 29 (409)
|||+.|+-...|.+| .++++-|-|+|-+|
T Consensus 1 MGCGNSTA~sa~ag~Gp~ga~KD~~~~S~~dddKRRNYGGVYVGlP 46 (62)
T PF15506_consen 1 MGCGNSTATSAGAGRGPAGAAKDVTEDSITDDDKRRNYGGVYVGLP 46 (62)
T ss_pred CCccccccccccCCCCCccccccccccccchhhhhcccCCeEEeCc
Confidence 999999975444222 23456677888888
No 18
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.98 E-value=12 Score=30.19 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=48.8
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNP 370 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd 370 (409)
+|..+-..+..+|. .++|.||+.+.+.|.+.+-.+.+.- . . +|. ....+..+|.+-+.|++.--.
T Consensus 5 ~Ai~~a~~Ave~D~---~g~y~eA~~~Y~~aie~l~~~~~~~----~-~----n~~---~k~~ir~K~~eYl~RAE~Lk~ 69 (76)
T cd02681 5 DAVQFARLAVQRDQ---EGRYSEAVFYYKEAAQLLIYAEMAG----T-L----NDS---HLKTIQEKSNEYLDRAQALHQ 69 (76)
T ss_pred HHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHhc----C-C----ChH---HHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999 9999999999999999997764331 1 0 122 124457888899998886554
No 19
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=69.11 E-value=11 Score=29.12 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLP 367 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~r 367 (409)
+|..+...|+.+|+ .++|.+|+-..+.|.+.+..+.+.-. +|. .-+.|..++.+.+.|++.
T Consensus 4 ~A~~~~~~Av~~D~---~g~~~~A~~~Y~~ai~~l~~~~~~~~----------~~~---~~~~l~~k~~~yl~RAE~ 64 (69)
T PF04212_consen 4 KAIELIKKAVEADE---AGNYEEALELYKEAIEYLMQALKSES----------NPE---RRQALRQKMKEYLERAEK 64 (69)
T ss_dssp HHHHHHHHHHHHHH---TTSHHHHHHHHHHHHHHHHHHHHHST----------THH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHhccCC----------CHH---HHHHHHHHHHHHHHHHHH
Confidence 57778888999999 99999999999999999998887631 111 113478899999998874
No 20
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.95 E-value=16 Score=36.06 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCCcchhHHHHHHHHH--------------HHHHHHHHHHhhhhcccCCCCCcHH
Q 046615 248 KRRFACELVKYWHEAQENIVNLP-LANGWGDKHRLFVRWKY--------------AEAKAAAYYLHGLILDEGKTEGCSE 312 (409)
Q Consensus 248 iakLA~e~s~~Y~~A~~~l~~~~-i~~~w~~k~~~~~~~K~--------------~~~~A~A~y~~gl~l~e~~~~~k~G 312 (409)
-.|+.+-+ +.|..|.- ..+ ...-|.+.-.-|++.|+ ..=.+-++|+.|..+.+ .+.|-
T Consensus 23 ~k~y~~ai-~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~---s~~~~ 95 (284)
T KOG4642|consen 23 PKRYDDAI-DCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ---SKGYD 95 (284)
T ss_pred hhhhchHH-HHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh---hcccc
Confidence 34453333 36666642 222 22345444455555554 22347799999999999 99999
Q ss_pred HHHHHHHHHHHHHHHH
Q 046615 313 MAAAALRAADEFLKES 328 (409)
Q Consensus 313 eaIa~L~~A~~~lkea 328 (409)
++|..|+.|.+++++.
T Consensus 96 eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999887765
No 21
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=65.92 E-value=9.1 Score=24.62 Aligned_cols=30 Identities=33% Similarity=0.221 Sum_probs=23.9
Q ss_pred HHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 046615 292 AAAYYLHGLILDEGKTEGCSEMAAAALRAADEF 324 (409)
Q Consensus 292 A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~ 324 (409)
|-+||..|..... .+++.+||.+++.|.++
T Consensus 1 a~~~~~~g~~~~~---~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQ---LGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---hCCchHHHHHHHHHHHH
Confidence 5678888988888 88999999888888764
No 22
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=61.22 E-value=13 Score=23.61 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=22.8
Q ss_pred HHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 046615 292 AAAYYLHGLILDEGKTEGCSEMAAAALRAADEF 324 (409)
Q Consensus 292 A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~ 324 (409)
|-++|+.|..... .++|.+|+.+++.|.++
T Consensus 1 a~~~~~lg~~~~~---~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ---LGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---hCCHHHHHHHHHHHHHH
Confidence 4577888888888 88888888888877664
No 23
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=58.70 E-value=22 Score=28.51 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNP 370 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd 370 (409)
+|..+.-.|..+|. .+.|.+|+.+.+.|.+.|..+.+.-. +|. .-+.+..+|.+.+.|++..-+
T Consensus 5 ~a~~l~~~Ave~D~---~g~y~eAl~~Y~~aie~l~~~lk~e~----------d~~---~k~~~r~ki~eY~~RAE~Lk~ 68 (77)
T cd02683 5 AAKEVLKRAVELDQ---EGRFQEALVCYQEGIDLLMQVLKGTK----------DEA---KKKNLRQKISEYMDRAEAIKK 68 (77)
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHhhCC----------CHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888899 99999999999999999988876521 111 124557888888888875443
No 24
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=56.52 E-value=45 Score=27.09 Aligned_cols=70 Identities=21% Similarity=0.142 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhh
Q 046615 287 YAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSR 365 (409)
Q Consensus 287 ~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra 365 (409)
..|=+|..+-=+|+-.+| .+.--+||++.+.|...+.++...- .|.....+.|...+.+.+++.+.+.-.
T Consensus 3 ~~~~~A~~~I~kaL~~dE---~g~~e~Al~~Y~~gi~~l~eg~ai~------~~~~~~~~~w~~ar~~~~Km~~~~~~v 72 (79)
T cd02679 3 GYYKQAFEEISKALRADE---WGDKEQALAHYRKGLRELEEGIAVP------VPSAGVGSQWERARRLQQKMKTNLNMV 72 (79)
T ss_pred hHHHHHHHHHHHHhhhhh---cCCHHHHHHHHHHHHHHHHHHcCCC------CCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 344467777778888888 6777788888888888888875441 122345678999999999998877643
No 25
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=55.75 E-value=19 Score=28.78 Aligned_cols=65 Identities=22% Similarity=0.167 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcC
Q 046615 290 AKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVN 369 (409)
Q Consensus 290 ~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdN 369 (409)
.+|.....+|+..+. ++.|.+|+-+.+.|.+.+-.+.+.-. +|. -=+.+..+|.+.+.||+..-
T Consensus 4 ~~A~~l~~~Ave~d~---~~~y~eA~~~Y~~~i~~~~~~~k~e~----------~~~---~k~~ir~K~~eYl~RAE~i~ 67 (75)
T cd02677 4 EQAAELIRLALEKEE---EGDYEAAFEFYRAGVDLLLKGVQGDS----------SPE---RREAVKRKIAEYLKRAEEIL 67 (75)
T ss_pred HHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHhccCC----------CHH---HHHHHHHHHHHHHHHHHHHH
Confidence 467888888898898 89999999999999998888765421 111 11466889999999998754
Q ss_pred C
Q 046615 370 P 370 (409)
Q Consensus 370 d 370 (409)
.
T Consensus 68 ~ 68 (75)
T cd02677 68 R 68 (75)
T ss_pred H
Confidence 3
No 26
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=53.54 E-value=60 Score=25.52 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVN 369 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdN 369 (409)
+|..+..+|+..+. .+.|-+|+-....|.+.+..+.+.-. +| ..-+.+..++.+-+.|++..-
T Consensus 5 ~A~~l~~~Av~~D~---~g~y~eA~~~Y~~aie~l~~~~k~e~----------~~---~~k~~~~~k~~eyl~RaE~LK 67 (75)
T cd02678 5 KAIELVKKAIEEDN---AGNYEEALRLYQHALEYFMHALKYEK----------NP---KSKESIRAKCTEYLDRAEKLK 67 (75)
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHhhCC----------CH---HHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888 99999999999999998888765511 11 233566888888888887643
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.38 E-value=3.6e+02 Score=29.39 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=53.5
Q ss_pred CCcccccccHHHHHHH---------------HHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHH
Q 046615 126 DAEETTMANSWYEILS---------------VLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYL 190 (409)
Q Consensus 126 ~~~~~s~~sl~fE~as---------------VlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F 190 (409)
.+.-+...+--||++. .|||||..+-.+.| +.+|.++|.+--||+
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~--------------------ldeald~f~klh~il 554 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN--------------------LDEALDCFLKLHAIL 554 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC--------------------HHHHHHHHHHHHHHH
Confidence 3345555555566543 57888866655653 678999999988887
Q ss_pred HHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHHHHHHHHH
Q 046615 191 DFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAI-DSVNATVAVKRRFACELVKYWHEAQE 264 (409)
Q Consensus 191 ~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi-~~~k~~~sliakLA~e~s~~Y~~A~~ 264 (409)
---. .||-++ ..+..+|---||-|-|-..+ .--..++.+++||+ ++|++-.+
T Consensus 555 ~nn~-evl~qi-----------------aniye~led~aqaie~~~q~~slip~dp~ilskl~----dlydqegd 607 (840)
T KOG2003|consen 555 LNNA-EVLVQI-----------------ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA----DLYDQEGD 607 (840)
T ss_pred HhhH-HHHHHH-----------------HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH----HHhhcccc
Confidence 3211 122211 11222333333444444433 33345667889984 67765444
No 28
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=45.05 E-value=81 Score=24.52 Aligned_cols=63 Identities=21% Similarity=0.116 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCc
Q 046615 290 AKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPV 368 (409)
Q Consensus 290 ~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rd 368 (409)
-+|..+--+|+..++ .+.|-+|+-..+.|.+.+-.+.+.. +.-..-+.+..++.+-+.|++..
T Consensus 6 ~~A~~li~~Av~~d~---~g~~~eAl~~Y~~a~e~l~~~~~~~-------------~~~~~~~~~~~k~~eyl~raE~l 68 (77)
T smart00745 6 SKAKELISKALKADE---AGDYEEALELYKKAIEYLLEGIKVE-------------SDSKRREAVKAKAAEYLDRAEEI 68 (77)
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhccC-------------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667888888 8899999999999999888876441 11112245677777777777653
No 29
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=41.82 E-value=55 Score=25.50 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNP 370 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd 370 (409)
+|..+.-.|+..|. .++|-+|+-....|.+.+..+.+... . -..-+.+..++.+-+.|++..-+
T Consensus 5 ~a~~l~~~Av~~D~---~g~~~~Al~~Y~~a~e~l~~~~~~~~----------~---~~~k~~l~~k~~~yl~RaE~Lk~ 68 (75)
T cd02656 5 QAKELIKQAVKEDE---DGNYEEALELYKEALDYLLQALKAEK----------E---PKLRKLLRKKVKEYLDRAEFLKE 68 (75)
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhccCC----------C---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555567788888 88999999999888888877764421 1 12235668889988888876443
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=39.61 E-value=5.2e+02 Score=27.87 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEecCCCCCCCCCCCchHHHhHhhHHHHHHHHHHHH
Q 046615 25 AVFVPGLRIPKPVDFAEPIGDELSRRLVERLSALRT 60 (409)
Q Consensus 25 ~~~vP~lr~~~~vdl~~~L~~~I~~~~~~~l~~lR~ 60 (409)
...+| |+... ++..+-|..+++..|+.+|-
T Consensus 124 iaVLP-F~n~~-----~~~~dg~~edli~~Ls~~~~ 153 (553)
T PRK12370 124 LAILP-FQMQD-----QVQSESLHYSIVKGLSQYAP 153 (553)
T ss_pred eEEeC-CCCCC-----CcchhhhHHHHHHHHhhCCC
Confidence 34467 88733 33366788889999998884
No 31
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=38.11 E-value=98 Score=23.38 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHH
Q 046615 136 WYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLD 191 (409)
Q Consensus 136 ~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~ 191 (409)
..+.+..++|||.++....+ ..+|..+|++|--+++
T Consensus 42 ~~~~a~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 42 HPDTANTLNNLGECYYRLGD--------------------YEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTH--------------------HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhhc
Confidence 46789999999988888773 6789999999877764
No 32
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=36.73 E-value=66 Score=25.56 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNP 370 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd 370 (409)
+|....-+|+..|. .+.|-+|+-....|.+.+-.+.+... +|. .-+.+..++.+.+.||++.-.
T Consensus 5 ~Ai~lv~~Av~~D~---~g~y~eA~~lY~~ale~~~~~~k~e~----------~~~---~k~~lr~k~~eyl~RAE~LK~ 68 (75)
T cd02684 5 KAIALVVQAVKKDQ---RGDAAAALSLYCSALQYFVPALHYET----------DAQ---RKEALRQKVLQYVSRAEELKA 68 (75)
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHhhCC----------CHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888 89999999999999888877765421 122 124678889999999886543
No 33
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.05 E-value=3.7e+02 Score=29.52 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhc---CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 046615 254 ELVKYWHEAQENIVN---LPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKM 330 (409)
Q Consensus 254 e~s~~Y~~A~~~l~~---~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~ 330 (409)
+...+|+...+.+.. .| .-.-++....-+..|...|+|.-.||.+...-. .+||-||+|-.-.|...+.++..
T Consensus 382 dl~RLYd~iiknl~e~~elP-G~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a---~~K~~EAlALy~Ra~sylqe~~~ 457 (593)
T KOG2460|consen 382 DLERLYDSIIKNLSEIMELP-GLESDKELQSQLELKKLYFKAFRCFYIAVSYQA---KKKYSEALALYVRAYSYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555444333 23 113356678999999999999999999999999 99999999999999999999988
Q ss_pred HhhhhcC
Q 046615 331 TCESFHM 337 (409)
Q Consensus 331 ~~~~f~~ 337 (409)
..++|-.
T Consensus 458 ~l~s~~e 464 (593)
T KOG2460|consen 458 ELESFKE 464 (593)
T ss_pred hhhchhh
Confidence 8877653
No 34
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=33.72 E-value=6.6e+02 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHH
Q 046615 137 YEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDF 192 (409)
Q Consensus 137 fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~ 192 (409)
.=++.+++|||.+|...+ ..++|-.++..|-.|++.
T Consensus 280 ~~va~~l~nLa~ly~~~G--------------------Kf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQG--------------------KFAEAEEYCERALEIYEK 315 (508)
T ss_pred HHHHHHHHHHHHHHhccC--------------------ChHHHHHHHHHHHHHHHH
Confidence 457889999998886655 157888899999988877
No 35
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=31.67 E-value=3e+02 Score=22.72 Aligned_cols=73 Identities=18% Similarity=0.008 Sum_probs=35.1
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHH--HHHHHHHHHhcCC-CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 046615 233 QLGMAIDSVNATVAVKRRFACELVK--YWHEAQENIVNLP-LANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEG 309 (409)
Q Consensus 233 ~~~kAi~~~k~~~sliakLA~e~s~--~Y~~A~~~l~~~~-i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~ 309 (409)
.+++++........+...++.-... -|.+|...+...- +.... ...+|+.|..... .+
T Consensus 39 ~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----------------~~~~~~la~~~~~---~g 99 (135)
T TIGR02552 39 LFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD----------------PRPYFHAAECLLA---LG 99 (135)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------------hHHHHHHHHHHHH---cC
Confidence 3566666433333344444433222 3677776555431 11111 1233444444444 45
Q ss_pred cHHHHHHHHHHHHHH
Q 046615 310 CSEMAAAALRAADEF 324 (409)
Q Consensus 310 k~GeaIa~L~~A~~~ 324 (409)
++.+|+..++.+.+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 100 EPESALKALDLAIEI 114 (135)
T ss_pred CHHHHHHHHHHHHHh
Confidence 667777777666553
No 36
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=31.44 E-value=2.1e+02 Score=21.45 Aligned_cols=32 Identities=19% Similarity=0.027 Sum_probs=23.0
Q ss_pred HHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHH
Q 046615 292 AAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLK 326 (409)
Q Consensus 292 A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lk 326 (409)
|.+++-.|.+... .+++-+|+..++.|.+.++
T Consensus 46 a~~~~~lg~~~~~---~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 46 ANTLNNLGECYYR---LGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhhc
Confidence 5666677777777 6677778888877777654
No 37
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=29.15 E-value=82 Score=19.83 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=21.1
Q ss_pred HHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 046615 293 AAYYLHGLILDEGKTEGCSEMAAAALRAADEF 324 (409)
Q Consensus 293 ~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~ 324 (409)
-+|+..|.+..+ .+.+.+|+..++.|.+.
T Consensus 2 ~~~~~lg~~y~~---~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQ---LGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHH---TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHhh
Confidence 456777777777 77788888777777654
No 38
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=28.45 E-value=1.6e+02 Score=26.46 Aligned_cols=94 Identities=14% Similarity=0.025 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHH-----HH
Q 046615 257 KYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESK-----MT 331 (409)
Q Consensus 257 ~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~-----~~ 331 (409)
-.|++|+....+...+....-.=+.++.+=..| -+|++|.+....+ -++..||.|.+..-.-. ..
T Consensus 22 ~hYQqAls~se~~~~~~~~el~dll~i~VisCH--NLA~FWR~~gd~~--------yELkYLqlASE~VltLiPQCp~~~ 91 (140)
T PF10952_consen 22 LHYQQALSLSEEIDESNEIELEDLLTISVISCH--NLADFWRSQGDSD--------YELKYLQLASEKVLTLIPQCPNTE 91 (140)
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHh--hHHHHHHHcCChH--------HHHHHHHHHHHHHHHhccCCCCcc
Confidence 579999988777642222222123444444333 6899999884333 38899999988765543 33
Q ss_pred hhhhcCCCCCCCCCCchhhhHHH-HHhhHhh
Q 046615 332 CESFHMTPPLSRNPPLWGTSKYL-SEKIPKD 361 (409)
Q Consensus 332 ~~~f~~~~~~~~~p~~~~~~k~L-~~~I~~~ 361 (409)
|.+|..+-|-. .+++.++||++ ...|-+.
T Consensus 92 C~afi~sLGCC-k~ALl~F~KRHPNP~iA~~ 121 (140)
T PF10952_consen 92 CEAFIDSLGCC-KKALLDFMKRHPNPEIARL 121 (140)
T ss_pred hHHHHHhhhcc-HHHHHHHHHhCCCHHHHHH
Confidence 55554333322 25677788776 4444443
No 39
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=27.88 E-value=50 Score=18.70 Aligned_cols=27 Identities=26% Similarity=0.073 Sum_probs=16.3
Q ss_pred HHHHhhhhcccCCCCCcHHHHHHHHHHHHH
Q 046615 294 AYYLHGLILDEGKTEGCSEMAAAALRAADE 323 (409)
Q Consensus 294 A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~ 323 (409)
+++..|..+.. .+.+.+++.+++.+.+
T Consensus 3 ~~~~~a~~~~~---~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLK---LGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence 34555555555 5667777777765543
No 40
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=27.36 E-value=1.7e+02 Score=18.86 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHhh
Q 046615 175 CRRESIDMFLKAAG 188 (409)
Q Consensus 175 ~lK~A~~~f~~AAG 188 (409)
..++|+.+|++||-
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 47889999999984
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=25.25 E-value=1.2e+03 Score=27.66 Aligned_cols=172 Identities=13% Similarity=-0.023 Sum_probs=83.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCC
Q 046615 130 TTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNL 209 (409)
Q Consensus 130 ~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~ 209 (409)
.+..+...+..-++.++|+-++++|-. .. ..+-.+|..-.|..+|-.|--+-.|.--+.+-+- .. .-.
T Consensus 73 ~~y~d~~~~~~~a~~~laay~s~~a~k-ek--------~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~--~~-~l~ 140 (1018)
T KOG2002|consen 73 EEYADVKSDQMKALDILAAYYSQLAMK-EK--------KKDEKDELFDKATLLFDLADKIDMYEDSHLLVQR--GF-LLL 140 (1018)
T ss_pred chhcchHHHHHHHHHHHHHHHHHHHHH-HH--------hcchhHHHHHHHHHHhhHHHHhhccCcchhhhhh--hh-hhh
Confidence 567788899999999999999999922 11 1112234444455555555444333222211100 00 000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH------HHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 046615 210 PMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACE------LVKYWHEAQENIVNLPLANGWGDKHRLFV 283 (409)
Q Consensus 210 p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e------~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~ 283 (409)
-.|.+ .=.|.||=.++.+---++=-..--.|+++.. .-.||..|+..-..+. ++.....|..|.
T Consensus 141 ~~~~~---------~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-aD~rIgig~Cf~ 210 (1018)
T KOG2002|consen 141 EGDKS---------MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK-ADVRIGIGHCFW 210 (1018)
T ss_pred cCCcc---------HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-CCccchhhhHHH
Confidence 01222 2245566666665332211111135677765 5588888776555443 222223232222
Q ss_pred HHHHHH--------------HHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHH
Q 046615 284 RWKYAE--------------AKAAAYYLHGLILDEGKTEGCSEMAAAALRAADE 323 (409)
Q Consensus 284 ~~K~~~--------------~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~ 323 (409)
+.+... .-+=|+.=.|.+...-++..+|+.++..|+.|-.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~ 264 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYK 264 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 211111 1122223333333333447788888888877654
No 42
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=24.76 E-value=1.6e+02 Score=27.89 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHHh
Q 046615 140 LSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNN 196 (409)
Q Consensus 140 asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~ 196 (409)
.-.++|+|.-|+.+| .+.+. ..+|-.+|.+|..||+-..+.
T Consensus 69 hdAlw~lGnA~ts~A--~l~~d--------------~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 69 HDALWCLGNAYTSLA--FLTPD--------------TAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHHHH--HH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hhcCC--------------hHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999 34322 357889999999999877655
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.33 E-value=1.1e+03 Score=26.90 Aligned_cols=165 Identities=20% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcCcCCCCccceecccC---CCCCcccccccHHHHHHHHH--------HHHHHHHHHHhhhhcCCCCCC
Q 046615 96 EDYLPILLGLVENGNQLQDKLQFPWLNQ---EDDAEETTMANSWYEILSVL--------QMMTMLSLSQANLLLLPKTST 164 (409)
Q Consensus 96 ~~Yl~~L~gl~~k~~~l~~~v~F~W~~a---~~~~~~~s~~sl~fE~asVl--------fNiAal~s~~A~s~~~~~~~~ 164 (409)
+.|-..|-.++ ..-+....|+|. |..+.++-..=-+||.+--| +|+|.+|.-..
T Consensus 202 ea~~cYlkAi~-----~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~---------- 266 (966)
T KOG4626|consen 202 EAKACYLKAIE-----TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR---------- 266 (966)
T ss_pred hhHHHHHHHHh-----hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh----------
Q ss_pred CCCCccCChhhHHHHHHHHHHHh--------------------hHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHH
Q 046615 165 DGYQSKVSVECRRESIDMFLKAA--------------------GYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQ 224 (409)
Q Consensus 165 dg~~~r~s~e~lK~A~~~f~~AA--------------------G~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~ 224 (409)
..-+|+.++++|+ |.++...+..-..+ ++++....|+.++
T Consensus 267 ----------~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral----------~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 267 ----------IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL----------ELQPNFPDAYNNL 326 (966)
T ss_pred ----------cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH----------hcCCCchHHHhHH
Q ss_pred HHH--------HHHHHHHHHHHhCCCCchHHHHHHHH---------HHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHH
Q 046615 225 SLG--------QGVDVQLGMAIDSVNATVAVKRRFAC---------ELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKY 287 (409)
Q Consensus 225 ~LA--------QAQEv~~~kAi~~~k~~~sliakLA~---------e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~ 287 (409)
+.| ||..|.-.----.+++.+++ .-|+. +...+|..|.+....+
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam-~NLgni~~E~~~~e~A~~ly~~al~v~p~~------------------ 387 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAM-NNLGNIYREQGKIEEATRLYLKALEVFPEF------------------ 387 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHH-HHHHHHHHHhccchHHHHHHHHHHhhChhh------------------
Q ss_pred HHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHH
Q 046615 288 AEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAA 321 (409)
Q Consensus 288 ~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A 321 (409)
|+|+--.|.++.. .+++-+||-|.++|
T Consensus 388 ----aaa~nNLa~i~kq---qgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 388 ----AAAHNNLASIYKQ---QGNLDDAIMCYKEA 414 (966)
T ss_pred ----hhhhhhHHHHHHh---cccHHHHHHHHHHH
No 44
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=22.36 E-value=42 Score=26.00 Aligned_cols=9 Identities=44% Similarity=0.737 Sum_probs=7.0
Q ss_pred CCccccccC
Q 046615 1 MGCFISTPN 9 (409)
Q Consensus 1 mgc~~s~~~ 9 (409)
|||..|+-.
T Consensus 1 MGC~~SK~d 9 (60)
T PF04783_consen 1 MGCSQSKLD 9 (60)
T ss_pred CCCCccccc
Confidence 888888854
No 45
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=22.19 E-value=1.6e+02 Score=34.33 Aligned_cols=49 Identities=18% Similarity=0.077 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhc
Q 046615 141 SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNV 197 (409)
Q Consensus 141 sVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~v 197 (409)
+|+||+|.+..++|-+.+. -++.+-|.++.+.+-+..|=-+|++|+.+=
T Consensus 751 ~v~FN~a~v~kkla~s~lr--------~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 751 SVKFNLALVLKKLAESILR--------LEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred hHHhHHHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3999999999999855442 234677889999999999999999998874
No 46
>PF14637 FNIP_M: Folliculin-interacting protein middle domain
Probab=22.11 E-value=3.3e+02 Score=26.55 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=54.8
Q ss_pred CCcCCCCcCcEEEecCCCCCCCCCCCchHHHhHhhHH--HHH-HHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHH
Q 046615 14 TRRKPKNVGEIAVFVPGLRIPKPVDFAEPIGDELSRR--LVE-RLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLAD 90 (409)
Q Consensus 14 ~~~~~~~~~~~~~~vP~lr~~~~vdl~~~L~~~I~~~--~~~-~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 90 (409)
+++|...+| +.|.++ +-....-+. .+++++-++ ++| .++.||..|.... .+...-+..
T Consensus 11 ~~~rk~kla-lavi~~-l~e~~~~~~--~f~~F~f~HfpLiEs~m~rL~~~i~~a~---------------~~~~~f~~~ 71 (232)
T PF14637_consen 11 ARRRKRKLA-LAVIFS-LSESSEEEM--NFQQFFFSHFPLIESHMSRLRSAIEKAY---------------SRRQQFLSI 71 (232)
T ss_pred cccccceEE-EEEEEe-cCcccHHHh--HHHHHHHHhHHHHHHHHHHHHHHHHHhc---------------cchHHHHHH
Confidence 466667778 778887 543222222 457777776 466 7999999998755 222444456
Q ss_pred HHHHHHHHHHHHHhhhhcCcCCCCccceecccCCC
Q 046615 91 LQQALEDYLPILLGLVENGNQLQDKLQFPWLNQED 125 (409)
Q Consensus 91 l~~al~~Yl~~L~gl~~k~~~l~~~v~F~W~~a~~ 125 (409)
+.+|+++.-..+..|-.. +.+. +=.|-+...
T Consensus 72 i~~A~~~f~~~i~~L~~a-PRl~---~PvWL~l~~ 102 (232)
T PF14637_consen 72 IYEAWEEFRQSICDLYTA-PRLK---EPVWLSLMS 102 (232)
T ss_pred HHHHHHHHHHHHHHHhcC-cccC---CChHHHhcc
Confidence 677888887777777422 2222 125766654
No 47
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=21.19 E-value=1.9e+02 Score=26.54 Aligned_cols=53 Identities=19% Similarity=0.405 Sum_probs=35.2
Q ss_pred CchHHHhHhhHHHHH--------HHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHHHHHHHHHH
Q 046615 39 FAEPIGDELSRRLVE--------RLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILL 103 (409)
Q Consensus 39 l~~~L~~~I~~~~~~--------~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al~~Yl~~L~ 103 (409)
|+..|++.|...++. .|..|-+.|++++ +++.-++-.++++....-.|+..++
T Consensus 109 lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~a------------kae~~dtE~Ye~vwkKmPaY~~nil 169 (175)
T PF04876_consen 109 LQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMA------------KAESSDTEHYEKVWKKMPAYFSNIL 169 (175)
T ss_pred HHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHH------------hccCCchHHHHHHHHHhhHHHHHHH
Confidence 456899999998854 4888889999998 1133333344555556666776554
No 48
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=20.51 E-value=6.1e+02 Score=26.32 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=56.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCC
Q 046615 130 TTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNL 209 (409)
Q Consensus 130 ~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~ 209 (409)
.....+|||++-+.-.|--+.....+.... + ....++..++..-++-.+|-.+|+...+.... ++ ....
T Consensus 219 ~~~rql~fElae~~~~i~dlk~~~~~~~~~------~-~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~---~~-~~~~ 287 (371)
T PF12309_consen 219 NLCRQLWFELAEIYSEIMDLKLEKLDEPQN------D-NEPPDDHALKKINQLCSKAIKYYQKFLDSYKS---PD-SGKL 287 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------c-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHcC---Cc-cccC
Confidence 445679999999988888776666532111 1 22356667888888899999999988888762 11 1345
Q ss_pred CCCCCHHHHHHHHH
Q 046615 210 PMDLTEGVLRAFCM 223 (409)
Q Consensus 210 p~DLs~~~L~aL~~ 223 (409)
|..++++.++.+..
T Consensus 288 ~~~~~~d~~~~~l~ 301 (371)
T PF12309_consen 288 PEKLDEDELRPYLY 301 (371)
T ss_pred CCCCcHHHHHHHHH
Confidence 55677777766543
No 49
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=20.23 E-value=5e+02 Score=22.49 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=14.3
Q ss_pred HHHHHhhhhcccCCCCCcHHHHHHHHHHHHH
Q 046615 293 AAYYLHGLILDEGKTEGCSEMAAAALRAADE 323 (409)
Q Consensus 293 ~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~ 323 (409)
-+++..|..+.. .+++.+|+..++.|.+
T Consensus 93 ~a~~~lg~~l~~---~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 93 EPVYQTGVCLKM---MGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Confidence 344455555555 4555555555555443
Done!