Query 046615
Match_columns 409
No_of_seqs 173 out of 237
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r9m_A BRO1 domain-containing 100.0 2.7E-71 9.2E-76 562.0 35.0 346 29-408 11-369 (376)
2 3c3r_A Programmed cell death 6 100.0 3.1E-69 1.1E-73 547.6 33.3 326 25-407 25-373 (380)
3 3rau_A Tyrosine-protein phosph 100.0 4.9E-67 1.7E-71 528.7 27.9 319 26-399 12-348 (363)
4 2xs1_A Programmed cell death 6 100.0 1E-63 3.4E-68 542.0 32.0 326 25-407 10-358 (704)
5 1zb1_A BRO1 protein; AIP1, BRO 100.0 2.6E-64 8.9E-69 513.1 25.0 317 24-398 9-350 (392)
6 2w2u_A Hypothetical P60 katani 73.0 9.5 0.00032 29.9 6.6 61 291-367 18-78 (83)
7 2v6y_A AAA family ATPase, P60 71.4 11 0.00037 29.4 6.6 66 291-372 10-75 (83)
8 4gcn_A Protein STI-1; structur 64.7 50 0.0017 26.0 10.6 34 134-187 2-35 (127)
9 2cpt_A SKD1 protein, vacuolar 64.4 12 0.00041 31.3 5.8 65 291-370 17-81 (117)
10 2crb_A Nuclear receptor bindin 62.4 6.9 0.00023 31.8 3.7 66 292-370 15-87 (97)
11 2dl1_A Spartin; SPG20, MIT, st 62.1 31 0.001 29.0 7.8 77 281-365 11-87 (116)
12 4a5x_A MITD1, MIT domain-conta 61.2 9.6 0.00033 30.1 4.4 62 291-368 15-76 (86)
13 1wfd_A Hypothetical protein 15 57.7 23 0.00078 28.2 6.2 62 291-368 14-75 (93)
14 2v6x_A Vacuolar protein sortin 57.6 27 0.00093 27.0 6.5 62 291-368 12-73 (85)
15 3q15_A PSP28, response regulat 52.7 76 0.0026 29.6 10.1 34 137-190 138-171 (378)
16 2hr2_A Hypothetical protein; a 52.4 12 0.0004 32.9 3.9 56 254-324 75-131 (159)
17 3eab_A Spastin; spastin, MIT, 51.2 34 0.0012 27.4 6.1 76 282-365 6-81 (89)
18 3ulq_A Response regulator aspa 49.6 1E+02 0.0035 28.7 10.4 35 291-328 263-297 (383)
19 4gyw_A UDP-N-acetylglucosamine 40.8 2.1E+02 0.0073 30.4 12.3 28 140-187 9-36 (723)
20 3u3w_A Transcriptional activat 39.4 2.1E+02 0.0071 25.5 12.2 117 137-327 152-269 (293)
21 3rkv_A Putative peptidylprolyl 38.3 1.5E+02 0.0052 23.6 14.1 39 137-195 8-46 (162)
22 4a1s_A PINS, partner of inscut 37.9 2.4E+02 0.0083 25.9 12.0 33 138-190 84-116 (411)
23 4abn_A Tetratricopeptide repea 32.4 3.7E+02 0.012 26.3 12.1 27 141-187 138-164 (474)
24 3vtx_A MAMA; tetratricopeptide 32.3 2E+02 0.0067 23.2 11.0 30 138-187 3-32 (184)
25 3ro3_A PINS homolog, G-protein 28.8 1.9E+02 0.0064 21.8 10.0 117 136-327 45-161 (164)
26 2ymb_A MITD1, MIT domain-conta 27.4 13 0.00044 35.4 0.0 63 290-368 21-83 (257)
27 3n71_A Histone lysine methyltr 27.0 1.4E+02 0.0048 30.3 7.7 56 137-230 390-445 (490)
28 3n71_A Histone lysine methyltr 26.5 5.1E+02 0.017 26.1 14.5 121 134-332 345-465 (490)
29 1ihg_A Cyclophilin 40; ppiase 24.6 4.2E+02 0.014 25.1 10.4 40 134-193 217-256 (370)
30 2qfc_A PLCR protein; TPR, HTH, 23.6 3.8E+02 0.013 23.7 12.4 34 138-191 153-186 (293)
31 4g1t_A Interferon-induced prot 23.0 4.3E+02 0.015 24.7 10.1 117 140-324 51-167 (472)
No 1
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=100.00 E-value=2.7e-71 Score=562.04 Aligned_cols=346 Identities=19% Similarity=0.300 Sum_probs=302.5
Q ss_pred CCCCCCCCCCCchHH--HhHhhHHHHHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHHHHHHHHHHhhh
Q 046615 29 PGLRIPKPVDFAEPI--GDELSRRLVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQALEDYLPILLGLV 106 (409)
Q Consensus 29 P~lr~~~~vdl~~~L--~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al~~Yl~~L~gl~ 106 (409)
| ||.|..|+|..-+ ++..+.+.+++++.+|++++++. .++ +.+...+++++++||++|++|.
T Consensus 11 ~-lk~T~~v~F~~~~~~~~~~~~~~~~~l~~~R~~l~~~~--------------~~~-~~~~~~~~~~l~~Yl~~L~~l~ 74 (376)
T 3r9m_A 11 P-LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELF--------------TDL-SCNPEMMKNAADSYFSLLQGFI 74 (376)
T ss_dssp C-CCCBCCCCCCCGGGBCSHHHHHHHHHHHHHHHHHHHHT--------------TCT-TCCHHHHHHHHHHHHHHHGGGT
T ss_pred C-CCCCceeeeeeeeecCCchHHHHHHHHHHHHHHHHHHH--------------hcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 6 8999999987543 24456678999999999999988 666 5567888999999999999998
Q ss_pred hc------CcCCCCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHH
Q 046615 107 EN------GNQLQDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESI 180 (409)
Q Consensus 107 ~k------~~~l~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~ 180 (409)
.. +..++..|.|+|+|+|++..+++++|++||++|||||||++|+++|+.... ..+.++|++|.|+
T Consensus 75 ~~~~~~~~~~~l~~~i~F~W~dsl~~~~~~~~~sl~fE~a~VLfNiaal~sq~A~~~~~--------~~r~~~e~lK~A~ 146 (376)
T 3r9m_A 75 NSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAG--------KENITEDEAKEVH 146 (376)
T ss_dssp BCSSCTTCBCTTTTSCCEEECCTTSTTCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHT--------CTTCCHHHHHHHH
T ss_pred hccccCCccccccccceeEeeCCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHhhc--------cccCChHHHHHHH
Confidence 63 245667899999999987789999999999999999999999999954421 2347888999999
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 046615 181 DMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWH 260 (409)
Q Consensus 181 ~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e~s~~Y~ 260 (409)
++||+|||||+||+++++|.+.+ ...+|+||++++|++|+.+||||||||+|+|||.++++. +||||||+|++++|+
T Consensus 147 ~~fq~AAG~f~~l~~~~~~~~~~--~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~k~-~liAKLa~q~~~~Y~ 223 (376)
T 3r9m_A 147 RSLKIAAGIFKHLKESHLPKLIT--PAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQ 223 (376)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSS--CCCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcccC--CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHH
Confidence 99999999999999999987632 134678999999999999999999999999999985554 599999999999999
Q ss_pred HHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 046615 261 EAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPP 340 (409)
Q Consensus 261 ~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~ 340 (409)
+|.+.++.. ......+|+.|++.|..+|.|+||||+|+++++ +++|||+||||+.|+++++++.+.|++|+.+.|
T Consensus 224 ~a~~~l~~~--~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~~ 298 (376)
T 3r9m_A 224 KADHTLSSL--EPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLA---SDKCGEAIRSLQEAEKLYAKAEALCKEYGETKG 298 (376)
T ss_dssp HHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999864 346678899999999999999999999999999 899999999999999999999999999987654
Q ss_pred --CCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCCCCCCC---CccccccCccccCCCCCCCCCcC
Q 046615 341 --LSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQTAPAL---PDFQLSLKPEDFILPSVDSSWKE 408 (409)
Q Consensus 341 --~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~~~p~L---p~~~l~~~p~~~~lP~~~~~W~~ 408 (409)
.+..|....+++.+.+.|++.+++++||||+|| ||+||+++|.+ |.+++ |+|+||++|++||.|++
T Consensus 299 ~~~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY-~~~VP~~~p~~~~k~~~~l-vk~~~~~~p~~~~~w~~ 369 (376)
T 3r9m_A 299 PGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY-FQKIPTEAPQLELKANYGL-VEPIPFEFPPTSVQWTP 369 (376)
T ss_dssp SSCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCSSCCCCCCCCSSCC-CCCCCCCCCCCCTTCCH
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHhhcccee-cccCCCCCCCcccccccce-ecCcCCCCCCCChhhhH
Confidence 344555556789999999999999999999666 78999999998 55677 99999999999999985
No 2
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=100.00 E-value=3.1e-69 Score=547.58 Aligned_cols=326 Identities=18% Similarity=0.178 Sum_probs=289.6
Q ss_pred EEecCCCCCCCCCCCchHHHhHhhHH-------------HHHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHH
Q 046615 25 AVFVPGLRIPKPVDFAEPIGDELSRR-------------LVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADL 91 (409)
Q Consensus 25 ~~~vP~lr~~~~vdl~~~L~~~I~~~-------------~~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l 91 (409)
.+.+| ||+|++|||.++|++||++. .+++|+.||+++++.. .+.+ ...
T Consensus 25 ~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~~~~~~-------------~~~~-----~~~ 85 (380)
T 3c3r_A 25 FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRP-------------LDKH-----EGA 85 (380)
T ss_dssp CCCCC-CCCBCCCCCHHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHHHHHSS-------------CCCS-----HHH
T ss_pred ccCCC-CCCCCcCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhcC-------------CCcC-----hHH
Confidence 67788 99999999999999999976 5889999999998753 0222 233
Q ss_pred HHHHHHHHHHHHhhhhcCcC--CCCccceecccCCC------CCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 046615 92 QQALEDYLPILLGLVENGNQ--LQDKLQFPWLNQED------DAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTS 163 (409)
Q Consensus 92 ~~al~~Yl~~L~gl~~k~~~--l~~~v~F~W~~a~~------~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~ 163 (409)
.+.|.+|+++|.+++.+++. .+..|.|+|+|+|+ ++.+++++|++||++|||||||+|++++|++
T Consensus 86 ~~~L~~Y~~~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal~s~~A~~------- 158 (380)
T 3c3r_A 86 LETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAE------- 158 (380)
T ss_dssp HHHHHHHHHHHHHHTTTTTCSSCCCCCCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCccceeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 56789999999999877532 23689999999996 3478999999999999999999999999953
Q ss_pred CCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 046615 164 TDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNA 243 (409)
Q Consensus 164 ~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~ 243 (409)
++|.++|++|.|+++||+|||||+||+++++|.++ ..+|+||++++|++|+.+||||||||+|+||+.++++
T Consensus 159 ----~~r~~~eglK~A~~~fq~AAG~f~~l~~~~l~~~~----~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~k 230 (380)
T 3c3r_A 159 ----QNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALS----REPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMK 230 (380)
T ss_dssp ----SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----SCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----hcCCChHHHHHHHHHHHHHHHHHHHHHHhcccccC----CCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67788999999999999999999999999987654 3477899999999999999999999999999999766
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHH
Q 046615 244 TVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADE 323 (409)
Q Consensus 244 ~~sliakLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~ 323 (409)
. +||||||+|++++|++|.+.++ .++.|.+.|+.|+++|..+|+|+||||+|+++++ +++|||+||||+.|.+
T Consensus 231 ~-~liAkLa~~~~~~Y~~A~~~l~---~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~ 303 (380)
T 3c3r_A 231 D-AIIAKLANQAADYFGDAFKQCQ---YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QKKFGEEIARLQHAAE 303 (380)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHT---TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHH
Confidence 5 5999999999999999999998 3556888999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccC--CCCCCCCccccccCccccCCCC
Q 046615 324 FLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMIL--QTAPALPDFQLSLKPEDFILPS 401 (409)
Q Consensus 324 ~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp--~~~p~Lp~~~l~~~p~~~~lP~ 401 (409)
+++++.+.|+.|. .++.+.+.|++.+++++||||+|| ||+|| .++|+++.+++ ++|+||.+|.
T Consensus 304 ~l~~a~~~~~~~~-------------~l~~l~~~i~~~l~~a~kdNd~IY-~e~VP~~~~Lp~i~~~~l-vk~~~~~~p~ 368 (380)
T 3c3r_A 304 LIKTVASRYDEYV-------------NVKDFSDKINRALAAAKKDNDFIY-HDRVPDLKDLDPIGKATL-VKSTPVNVPI 368 (380)
T ss_dssp HHHHHHHHCTTTC-------------CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCGGGSCCCCCCCC-CCCCCCCSCC
T ss_pred HHHHHHHHhcchH-------------hHHHHHHHHHHHHHHHHHhhCeec-ccCCCCcccCCCCCCCce-ecccCCCCCC
Confidence 9999999986543 358899999999999999999777 99999 78999998888 9999999998
Q ss_pred CCCCCc
Q 046615 402 VDSSWK 407 (409)
Q Consensus 402 ~~~~W~ 407 (409)
|+.|+
T Consensus 369 -~~~~~ 373 (380)
T 3c3r_A 369 -SQKFT 373 (380)
T ss_dssp -SSSCC
T ss_pred -ccchh
Confidence 89997
No 3
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.9e-67 Score=528.71 Aligned_cols=319 Identities=17% Similarity=0.146 Sum_probs=279.0
Q ss_pred EecCCCCCCCCCCCchHHHhHhhHH----------HHHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHHHHHH
Q 046615 26 VFVPGLRIPKPVDFAEPIGDELSRR----------LVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADLQQAL 95 (409)
Q Consensus 26 ~~vP~lr~~~~vdl~~~L~~~I~~~----------~~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l~~al 95 (409)
+.|| ||+|++||+++||++||+++ .+++|+.||+++++.. .+ .++ .+.|
T Consensus 12 i~l~-lK~t~~vd~~~~L~~~I~~~y~e~~~~~~~~l~~l~~LR~~~~~~~---------------~~-~~g----~~~L 70 (363)
T 3rau_A 12 IWLD-LKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVP---------------RD-FEG----CSVL 70 (363)
T ss_dssp CCCC-CCCEEEECCHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHTCC---------------SS-HHH----HHHH
T ss_pred cCCC-CCcCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCC---------------CC-HHH----HHHH
Confidence 5677 99999999999999999986 4888999999987643 22 222 3578
Q ss_pred HHHHHHHHhhhhcCcCC---CCccceecccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCC
Q 046615 96 EDYLPILLGLVENGNQL---QDKLQFPWLNQEDDAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVS 172 (409)
Q Consensus 96 ~~Yl~~L~gl~~k~~~l---~~~v~F~W~~a~~~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s 172 (409)
.+||.+|..++.+++.. +.+|.|+|+|+|++ .+++++|++||++|||||||++|+++|++ ++|.+
T Consensus 71 ~~Yy~qL~~l~~rfp~~~~~~~~i~F~W~ds~~~-~~~~~~sl~fE~a~VLfNiaal~s~~a~~-----------~~r~~ 138 (363)
T 3rau_A 71 RKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSG-KSVAHEDIKYEQACILYNLGALHSMLGAM-----------DKRVS 138 (363)
T ss_dssp HHHHHHHHHHHHHSCCSTTCTTCCCEEEECTTTC-CEEEESCHHHHHHHHHHHHHHHHHHHHHH-----------SCCCS
T ss_pred HHHHHHHHHHHhcCCCCcccccceeEEeecccCC-ccccccCHHHHHHHHHHHHHHHHHHHHHH-----------hccCC
Confidence 99999999999886422 34799999999987 68999999999999999999999999954 67789
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 046615 173 VECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFA 252 (409)
Q Consensus 173 ~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA 252 (409)
+|++|.||++||+|||||+||++++++ .+|+||++++|++|+.+||||||||+|+||+.++++. +||||||
T Consensus 139 ~~glK~A~~~fq~AAG~f~~l~~~~~~--------~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~k~-~liAkLa 209 (363)
T 3rau_A 139 EEGMKVSCTHFQCAAGAFAYLREHFPQ--------AYSVDMSRQILTLNVNLMLGQAQECLLEKSMLDNRKS-FLVARIS 209 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCS--------CSSGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hHHHHHH
Confidence 999999999999999999999999864 2567999999999999999999999999999997654 5999999
Q ss_pred HHHHHHHHHHHHHHhcCCC---CCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 046615 253 CELVKYWHEAQENIVNLPL---ANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESK 329 (409)
Q Consensus 253 ~e~s~~Y~~A~~~l~~~~i---~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~ 329 (409)
+|++++|++|.+.++..+. ...+.++|+.|+++|..+|+|+||||+|+++++ .++|||+||||+.|.+++++|.
T Consensus 210 ~q~~~~Y~~a~~~l~~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~ 286 (363)
T 3rau_A 210 AQVVDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEE---QQKFGERVAYFQSALDKLNEAI 286 (363)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHH---hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987652 335678999999999999999999999999999 8999999999999999999999
Q ss_pred HHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCC--CCCCCCccccccCccccCC
Q 046615 330 MTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQ--TAPALPDFQLSLKPEDFIL 399 (409)
Q Consensus 330 ~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~--~~p~Lp~~~l~~~p~~~~l 399 (409)
+.|+.+ ...+...++.+.+.|++.+++++||||+|| |++||+ ++|+++...+ ++|.||+.
T Consensus 287 ~~~k~~--------~~~~~~~~~~~~~~i~~~l~~aekdNd~IY-~~~VP~~~~L~~i~~~~l-vk~~p~~~ 348 (363)
T 3rau_A 287 KLAKGQ--------PDTVQDALRFTMDVIGGKYNSAKKDNDFIY-HEAVPALDTLQPVKGAPL-VKPLPVNP 348 (363)
T ss_dssp HHTTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCGGGSCCCCCCCC-CCCCCCCT
T ss_pred HHhcCC--------chhHHHHHHHHHHHHHHHHHHHHhccCcCC-cccCCCccccCCCCCCcc-ccCCCCCc
Confidence 998742 234456678888999999999999999655 999995 7999987666 99998875
No 4
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=100.00 E-value=1e-63 Score=542.03 Aligned_cols=326 Identities=18% Similarity=0.173 Sum_probs=286.1
Q ss_pred EEecCCCCCCCCCCCchHHHhHhhHH-------------HHHHHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHHH
Q 046615 25 AVFVPGLRIPKPVDFAEPIGDELSRR-------------LVERLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLADL 91 (409)
Q Consensus 25 ~~~vP~lr~~~~vdl~~~L~~~I~~~-------------~~~~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~l 91 (409)
.+.|| ||+|.+|||..||++||+.+ .+++|+.||+++++.. .+.+ . ..
T Consensus 10 ~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~lR~~~~~~~-------------~~~~-~----~~ 70 (704)
T 2xs1_A 10 FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRP-------------LDKH-E----GA 70 (704)
T ss_dssp CCCCC-CCCBCCCCSHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHHTSC-------------CCCC-H----HH
T ss_pred hhcCC-CCCCCcCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhCC-------------CCCC-H----HH
Confidence 67899 99999999999999999965 5788999999987643 0222 2 23
Q ss_pred HHHHHHHHHHHHhhhhcCcC--CCCccceecccCCC------CCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 046615 92 QQALEDYLPILLGLVENGNQ--LQDKLQFPWLNQED------DAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTS 163 (409)
Q Consensus 92 ~~al~~Yl~~L~gl~~k~~~--l~~~v~F~W~~a~~------~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~ 163 (409)
...|.+||++|.++..+++. .+..|.|+|+|+|+ +..+++++|++||++|||||||+||+++|+.
T Consensus 71 ~~~L~~Y~~~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~------- 143 (704)
T 2xs1_A 71 LETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAE------- 143 (704)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTTCSSCCCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCcccceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 56789999999999987543 23589999999996 3368899999999999999999999999943
Q ss_pred CCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 046615 164 TDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDSVNA 243 (409)
Q Consensus 164 ~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~~k~ 243 (409)
++|.++|++|.||++||+|||||+||+++++|.++. .+|+||++++|.+|+.+||||||||+|+||+.++++
T Consensus 144 ----~~r~~~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~----~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~k 215 (704)
T 2xs1_A 144 ----QNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSR----EPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMK 215 (704)
T ss_dssp ----SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----hCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 667889999999999999999999999999876542 477899999999999999999999999999999765
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHH
Q 046615 244 TVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADE 323 (409)
Q Consensus 244 ~~sliakLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~ 323 (409)
. +||||||+|++++|++|.+.+. ++..|.++|+.|+++|+.+|+|+||||+|+++.+ .++||++||||+.|.+
T Consensus 216 ~-~liAkLa~~~~~~Y~~A~~~l~---~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~ 288 (704)
T 2xs1_A 216 D-AIIAKLANQAADYFGDAFKQCQ---YKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QYYFGEEIARLQHAAE 288 (704)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHH---TCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HhHHHHHHHHHHHHHH
Confidence 5 5999999999999999999998 3456788899999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccCC--CCCCCCccccccCccccCCCC
Q 046615 324 FLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMILQ--TAPALPDFQLSLKPEDFILPS 401 (409)
Q Consensus 324 ~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp~--~~p~Lp~~~l~~~p~~~~lP~ 401 (409)
+++++.+.|+.|. .++.+.+.|++.+++++||||+|| |++||+ ++|+++.+++ ++|.||..|.
T Consensus 289 ~l~~a~~~~~~~~-------------~~~~l~~~i~~~l~~~~kdNd~IY-~e~VP~~~~L~~i~~~~l-vk~~~~~~p~ 353 (704)
T 2xs1_A 289 LIKTVASRYDEYV-------------NVKDFSDKINRALAAAKKDNDFIY-HDRVPDLKDLDPIGKATL-VKSTPVNVPI 353 (704)
T ss_dssp HHHHHHHHSTTTC-------------CCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCGGGSCCCCCCCC-CCCCCCCSCC
T ss_pred HHHHHHHHhcchH-------------hHHHHHHHHHHHHHHHHHhhCeee-ccCCCCccccCCccCccc-cccCCCCccc
Confidence 9999998875432 357899999999999999999776 999995 8999998888 7999999976
Q ss_pred CCCCCc
Q 046615 402 VDSSWK 407 (409)
Q Consensus 402 ~~~~W~ 407 (409)
++.|+
T Consensus 354 -~~~~~ 358 (704)
T 2xs1_A 354 -SQKFT 358 (704)
T ss_dssp -STTCC
T ss_pred -ccchh
Confidence 88886
No 5
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-64 Score=513.06 Aligned_cols=317 Identities=15% Similarity=0.117 Sum_probs=271.6
Q ss_pred EEEecCCCCCCCCCCCchHHHhHhhHHH------------HH-HHHHHHHHHHHHhcccCCCccCccccccCCCCCCHHH
Q 046615 24 IAVFVPGLRIPKPVDFAEPIGDELSRRL------------VE-RLSALRTRIVVMAGQEAPMATKPRRKATQHGGSTLAD 90 (409)
Q Consensus 24 ~~~~vP~lr~~~~vdl~~~L~~~I~~~~------------~~-~l~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 90 (409)
-.+.+| ||+|++|||..+|++||.+.| ++ +|+.||+++++.. .+ .+
T Consensus 9 ~~l~~p-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~y~~~l~~~l~~lR~~~~~~~---------------~~-----~~ 67 (392)
T 1zb1_A 9 YLFDLK-LKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGEL---------------AP-----SS 67 (392)
T ss_dssp CCCCCC-CCCBCCCCHHHHHHHHHHHHSCTTTGGGGCCHHHHHHHHHHHHHTTSSC---------------CH-----HH
T ss_pred ccccCC-CCCCCccCHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHhhcCC---------------CC-----hH
Confidence 357789 999999999999999997643 46 8999999975422 22 45
Q ss_pred HHHHHHHHHHHHHhhhhcCcC--CCCccceecccCCC----CCcccccccHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 046615 91 LQQALEDYLPILLGLVENGNQ--LQDKLQFPWLNQED----DAEETTMANSWYEILSVLQMMTMLSLSQANLLLLPKTST 164 (409)
Q Consensus 91 l~~al~~Yl~~L~gl~~k~~~--l~~~v~F~W~~a~~----~~~~~s~~sl~fE~asVlfNiAal~s~~A~s~~~~~~~~ 164 (409)
.++++.+||++|.+|..+++. -+..|.|+|+|+|+ +..+++++|++||++|||||||+||+++|++
T Consensus 68 ~~~~l~~Y~~~L~~l~~rf~~~~~~~~i~F~W~d~l~~~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~-------- 139 (392)
T 1zb1_A 68 LSEQNLKYYSFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNIAVIFTQIARE-------- 139 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGCCCEEEECCCCSSSCSSCEEEECCHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccceeeeecccccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 678899999999999977432 24689999999996 5588999999999999999999999999953
Q ss_pred CCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--CC
Q 046615 165 DGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLRAFCMQSLGQGVDVQLGMAIDS--VN 242 (409)
Q Consensus 165 dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~aL~~~~LAQAQEv~~~kAi~~--~k 242 (409)
++|. ++|.|+++||+|||||+||++++++ .+|+||++++|++|+.+||||||||+|+||+.+ .+
T Consensus 140 ---~~r~---~lk~A~~~fq~AAG~f~~l~~~~~~--------~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~~ 205 (392)
T 1zb1_A 140 ---NINE---DYKNSIANLTKAFSCFEYLSENFLN--------SPSVDLQSENTRFLANICHAEAQELFVLKLLNDQISS 205 (392)
T ss_dssp ---TTTS---SSHHHHHHHHHHHHHHHHHHHHCCC--------CSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGG
T ss_pred ---hchH---HHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 2222 6999999999999999999999986 256799999999999999999999999999985 24
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHH
Q 046615 243 ATVAVKRRFACELVKYWHEAQENIVNLP--LANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRA 320 (409)
Q Consensus 243 ~~~sliakLA~e~s~~Y~~A~~~l~~~~--i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~ 320 (409)
.+.+||||||+|++++|++|.+.++..+ +.+.|.++|+.|+++|+.+|+|+||||+|+++++ +++|||+||||+.
T Consensus 206 ~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~ 282 (392)
T 1zb1_A 206 KQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEE---ENRVGEAIAFLDF 282 (392)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCTTHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHH
Confidence 4556999999999999999999999886 4467899999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCCCCccccccC--CCCCCCCccccccCccccC
Q 046615 321 ADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNPGPQNYEMIL--QTAPALPDFQLSLKPEDFI 398 (409)
Q Consensus 321 A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd~iy~~~kvp--~~~p~Lp~~~l~~~p~~~~ 398 (409)
|.++++++.+.++.+. +.+ +++.+.+.|++.+++++||||+|| ||+|| .++|+++...+ ++|.|+.
T Consensus 283 A~~~l~~a~~~~~~~~--------~~~--d~~~l~~~i~~~l~~a~kdNd~IY-~e~VP~~~~L~~i~~~~~-vk~~~~~ 350 (392)
T 1zb1_A 283 SMQQLISSLPFKTWLV--------EFI--DFDGFKETLEKKQKELIKDNDFIY-HESVPAVVQVDSIKALDA-IKSPTWE 350 (392)
T ss_dssp HHHHHHHHGGGCTTTT--------TTS--CHHHHHHHHHHHHHHHHHHHHSSS-CCCCCSSCCGGGSCCCCC-CCCCCHH
T ss_pred HHHHHHHHHHhhhccc--------hHH--HHHHHHHHHHHHHHHHHHHhCccC-cCCCCCccccccCCCcCc-ccccCCc
Confidence 9999999998875432 222 578999999999999999999777 99999 66677765444 8887664
No 6
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=72.98 E-value=9.5 Score=29.92 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=47.9
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLP 367 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~r 367 (409)
+|..+--.|...|. .++|.+|+...+.|.+.+..+.+... .+. .-+.+..+|.+.++|++.
T Consensus 18 ~Ai~lv~~Ave~D~---~g~y~eAl~lY~~aie~l~~alk~e~----------d~~---~k~~ir~K~~eY~~RAE~ 78 (83)
T 2w2u_A 18 MARKYAINAVKADK---EGNAEEAITNYKKAIEVLAQLVSLYR----------DGS---TAAIYEQMINEYKRRIEV 78 (83)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHST----------TSS---THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHCC----------CHH---HHHHHHHHHHHHHHHHHH
Confidence 56777788888899 99999999999999999999876632 111 124578899999998875
No 7
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=71.43 E-value=11 Score=29.45 Aligned_cols=66 Identities=17% Similarity=0.056 Sum_probs=52.0
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNP 370 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd 370 (409)
+|..+-..|...|. .++|.+|+...+.|.+.+..+.+.-. .|. .-+.+..+|.+.+.|++..-.
T Consensus 10 ~Ai~lv~~Ave~D~---~g~y~eAl~lY~~aie~l~~~lk~e~----------d~~---~k~~ir~K~~eY~~RAE~Lk~ 73 (83)
T 2v6y_A 10 MARKYAILAVKADK---EGKVEDAITYYKKAIEVLSQIIVLYP----------ESV---ARTAYEQMINEYKKRISYLEK 73 (83)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHCT----------TCT---THHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHCC----------CHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 57777788888899 99999999999999999999876521 112 124678999999999998766
Q ss_pred CC
Q 046615 371 GP 372 (409)
Q Consensus 371 ~i 372 (409)
++
T Consensus 74 ~l 75 (83)
T 2v6y_A 74 VL 75 (83)
T ss_dssp CC
T ss_pred Hc
Confidence 43
No 8
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=64.71 E-value=50 Score=26.04 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHh
Q 046615 134 NSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAA 187 (409)
Q Consensus 134 sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AA 187 (409)
|..-|.+-...|+|..+.+..+ ..+|+.+|++|-
T Consensus 2 n~~~d~A~a~~~lG~~~~~~~~--------------------~~~A~~~y~~Al 35 (127)
T 4gcn_A 2 NAMTDAAIAEKDLGNAAYKQKD--------------------FEKAHVHYDKAI 35 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Confidence 5567888888899977776662 678999999884
No 9
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=64.43 E-value=12 Score=31.26 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=46.8
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNP 370 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd 370 (409)
+|..+..+++..+. ...|.+|+...+.|.++|-.+.+.. +..-..-+.|..++.+.+.|+++.-.
T Consensus 17 kAi~lv~~Ave~D~---ag~y~eAl~lY~~Aie~l~~alk~e------------~~~~~~k~~lr~K~~eYl~RAE~LK~ 81 (117)
T 2cpt_A 17 KAIDLASKAAQEDK---AGNYEEALQLYQHAVQYFLHVVKYE------------AQGDKAKQSIRAKCTEYLDRAEKLKE 81 (117)
T ss_dssp HHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHHHTS------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHhc------------cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777788888 8999999999999999988887642 01111224567778888887776554
No 10
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=62.42 E-value=6.9 Score=31.79 Aligned_cols=66 Identities=17% Similarity=0.002 Sum_probs=45.2
Q ss_pred HHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhH-----HH--HHhhHhhHhh
Q 046615 292 AAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSK-----YL--SEKIPKDISS 364 (409)
Q Consensus 292 A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k-----~L--~~~I~~~l~r 364 (409)
|-.|-+.+-.+.. .++|+|||.|.+.|..++.+|.+.-. ++.++..++ ++ ...|++..++
T Consensus 15 AH~~~RrAe~ll~---~gkydeAIech~kAa~yL~eAmkltq----------s~qa~~SLqLQrd~HlKQ~~liq~r~k~ 81 (97)
T 2crb_A 15 AHQQSRRADRLLA---AGKYEEAISCHRKATTYLSEAMKLTE----------SEQAHLSLELQRDSHMKQLLLIQERWKR 81 (97)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHhhc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777888 89999999999999999999987732 222233221 11 2457777777
Q ss_pred hcCcCC
Q 046615 365 RLPVNP 370 (409)
Q Consensus 365 a~rdNd 370 (409)
+.|+..
T Consensus 82 ~~~ee~ 87 (97)
T 2crb_A 82 AKREER 87 (97)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 776644
No 11
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.15 E-value=31 Score=28.97 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHh
Q 046615 281 LFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPK 360 (409)
Q Consensus 281 ~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~ 360 (409)
.+...|.+|=+|..|-=.|+.+|| .++--+|+...+.+...|..+...- ..+..-.++.|.....|..++.+
T Consensus 11 ~l~~ik~~h~~AF~~Is~AL~~DE---~g~k~~Al~lYk~GI~eLe~Gl~I~-----~~~~~~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 11 EIKIIREAYKKAFLFVNKGLNTDE---LGQKEEAKNYYKQGIGHLLRGISIS-----SKESEHTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHHSSC-----CCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh---cCCHHHHHHHHHHHHHHHHHhcccc-----ccCCCCCChhHHHHHHHHHHHHH
Confidence 456688888899999999999999 7777788888888888888886541 11112357889999999988888
Q ss_pred hHhhh
Q 046615 361 DISSR 365 (409)
Q Consensus 361 ~l~ra 365 (409)
+|.-+
T Consensus 83 nL~~v 87 (116)
T 2dl1_A 83 TLQNV 87 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 12
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=61.20 E-value=9.6 Score=30.05 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCc
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPV 368 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rd 368 (409)
+|....-.++..|. .++|.+|+...+.|.+.|-.+.+... .|. .-+.+..+|.+-+.|++..
T Consensus 15 ~A~~lv~~Ave~D~---~g~y~eAl~lY~~Aie~ll~alk~e~----------d~~---~k~~lr~K~~eYl~RAE~L 76 (86)
T 4a5x_A 15 AAATVLKRAVELDS---ESRYPQALVCYQEGIDLLLQVLKGTK----------DNT---KRCNLREKISKYMDRAENI 76 (86)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTCC----------CHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHhhCC----------CHH---HHHHHHHHHHHHHHHHHHH
Confidence 56677778888898 99999999999999999888875421 111 1245678888888888754
No 13
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=57.74 E-value=23 Score=28.15 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=45.1
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCc
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPV 368 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rd 368 (409)
+|......+...|. .+.|.+|+...+.|.+.|-.+.+... .|. .-+.+..++.+.+.|+++.
T Consensus 14 ~Ai~lv~~Ave~D~---~g~y~eAl~~Y~~Aie~l~~alk~e~----------~~~---~k~~l~~K~~eYl~RAE~L 75 (93)
T 1wfd_A 14 AAVAVLKRAVELDA---ESRYQQALVCYQEGIDMLLQVLKGTK----------ESS---KRCVLRTKISGYMDRAENI 75 (93)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTCC----------CHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHCC----------CHH---HHHHHHHHHHHHHHHHHHH
Confidence 56777788888899 99999999999999999988876521 111 1234566777777666643
No 14
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=57.60 E-value=27 Score=26.96 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCc
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPV 368 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rd 368 (409)
+|.....+++..|. .+.|.+|+...+.|.+.|-.+.+... .|. .-+.+..++.+.+.|+++.
T Consensus 12 ~A~~l~~~Av~~D~---~g~y~eAl~~Y~~aie~l~~a~k~e~----------~~~---~k~~l~~k~~eYl~RAE~L 73 (85)
T 2v6x_A 12 KGIELVQKAIDLDT---ATQYEEAYTAYYNGLDYLMLALKYEK----------NPK---SKDLIRAKFTEYLNRAEQL 73 (85)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHCC----------CHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHhCC----------CHH---HHHHHHHHHHHHHHHHHHH
Confidence 56666777788888 89999999999999999988875521 111 2245678888888887753
No 15
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=52.67 E-value=76 Score=29.65 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHH
Q 046615 137 YEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYL 190 (409)
Q Consensus 137 fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F 190 (409)
.+.+.+++|+|.+|....+ ...|..+|++|--+|
T Consensus 138 ~~~a~~~~~lg~~y~~~~~--------------------~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQ--------------------THVSMYHILQALDIY 171 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------------cHHHHHHHHHHHHHH
Confidence 6778888999988877772 467888999887776
No 16
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=52.40 E-value=12 Score=32.88 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhcC-CCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 046615 254 ELVKYWHEAQENIVNL-PLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEF 324 (409)
Q Consensus 254 e~s~~Y~~A~~~l~~~-~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~ 324 (409)
++...|+.|.+..+.. .+...|.+-|+ .|||+.|..+.. -++|-|||.+++.|.++
T Consensus 75 eAl~~~~kAL~l~n~~~e~~pd~~~A~~------------~~~~~rG~aL~~---lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 75 EALHSADKALHYFNRRGELNQDEGKLWI------------SAVYSRALALDG---LGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHHHHCCTTSTHHHHHH------------HHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccCCCchHHHHH------------HHHHhHHHHHHH---CCCHHHHHHHHHHHHhc
Confidence 4445566666653331 23344433222 277999999999 88999999888888775
No 17
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=51.25 E-value=34 Score=27.37 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhh
Q 046615 282 FVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKD 361 (409)
Q Consensus 282 ~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~ 361 (409)
.-+.|.+|=+|.-|-=.|+..||.+..++-.+|+-..+.....|..+... |.....+.|...+.|..+..++
T Consensus 6 ~~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V--------~~~g~G~~we~Ar~LQ~KM~~n 77 (89)
T 3eab_A 6 AERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAV--------IVTGQGEQCERARRLQAKMMTN 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHS--------CCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCC--------ccCCCChhHHHHHHHHHHHHHH
Confidence 44667777778888888999999432266778888888888888888654 3333678899999999999988
Q ss_pred Hhhh
Q 046615 362 ISSR 365 (409)
Q Consensus 362 l~ra 365 (409)
|.-+
T Consensus 78 L~~v 81 (89)
T 3eab_A 78 LVMA 81 (89)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 18
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=49.57 E-value=1e+02 Score=28.66 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHH
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKES 328 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea 328 (409)
.+.+++..|.+... .+++.+|+..++.|.+...+.
T Consensus 263 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 263 LPQAYFLITQIHYK---LGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHc
Confidence 37777777777777 777777777776666655444
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=40.81 E-value=2.1e+02 Score=30.44 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHh
Q 046615 140 LSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAA 187 (409)
Q Consensus 140 asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AA 187 (409)
+-.++|+|.+|.+.++ ..+|..+|++|-
T Consensus 9 a~al~nLG~~~~~~G~--------------------~~eAi~~~~kAl 36 (723)
T 4gyw_A 9 ADSLNNLANIKREQGN--------------------IEEAVRLYRKAL 36 (723)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Confidence 4578899988887772 578999998874
No 20
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=39.42 E-value=2.1e+02 Score=25.53 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 046615 137 YEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEG 216 (409)
Q Consensus 137 fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~ 216 (409)
+..+.++.|+|.+|....+ ..+|..+|++|--++.- . + +..+.
T Consensus 152 ~~~~~~~~~lg~~y~~~g~--------------------~~~A~~~~~~al~~~~~----~-~------------~~~~~ 194 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGY--------------------LKKGIDLFEQILKQLEA----L-H------------DNEEF 194 (293)
T ss_dssp THHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHH----S-S------------CCHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHh----c-c------------cchhH
Confidence 4567789999988887772 57899999998655422 1 1 23345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 046615 217 VLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYY 296 (409)
Q Consensus 217 ~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y 296 (409)
...++.++...-. .. ..- .++..+|.+|.+.....+. . .+.+.+|+
T Consensus 195 ~~~~~~nlg~~y~---------~~--~~y-------~~A~~~~~~al~~~~~~~~--~--------------~~~~~~~~ 240 (293)
T 3u3w_A 195 DVKVRYNHAKALY---------LD--SRY-------EESLYQVNKAIEISCRINS--M--------------ALIGQLYY 240 (293)
T ss_dssp HHHHHHHHHHHHH---------HT--TCH-------HHHHHHHHHHHHHHHHTTB--C--------------TTHHHHHH
T ss_pred HHHHHHHHHHHHH---------HH--hHH-------HHHHHHHHHHHHHHHHcCc--H--------------HHHHHHHH
Confidence 5555554443221 11 111 3455678888877665431 1 11356666
Q ss_pred HhhhhcccCCCCC-cHHHHHHHHHHHHHHHHH
Q 046615 297 LHGLILDEGKTEG-CSEMAAAALRAADEFLKE 327 (409)
Q Consensus 297 ~~gl~l~e~~~~~-k~GeaIa~L~~A~~~lke 327 (409)
..|.+... .+ .+-+|+..++.|..+++.
T Consensus 241 ~lg~~~~~---~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 241 QRGECLRK---LEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHH---TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hCCcHHHHHHHHHHHHHHHHH
Confidence 66666665 44 346677777766665553
No 21
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=38.33 E-value=1.5e+02 Score=23.64 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHH
Q 046615 137 YEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVN 195 (409)
Q Consensus 137 fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~ 195 (409)
++.+..+.+.|..+.+..+ ..+|+.+|.+|--++.....
T Consensus 8 ~~~a~~~~~~G~~~~~~~~--------------------~~~A~~~y~~al~~~~~~~~ 46 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKD--------------------YKEAIDAYRDALTRLDTLIL 46 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcc
Confidence 5667777888876666551 57899999999888766543
No 22
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=37.87 E-value=2.4e+02 Score=25.85 Aligned_cols=33 Identities=0% Similarity=0.004 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHH
Q 046615 138 EILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYL 190 (409)
Q Consensus 138 E~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F 190 (409)
..+.+++++|..|....+ ..+|..+|++|-.++
T Consensus 84 ~~~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~ 116 (411)
T 4a1s_A 84 TLSAIYSQLGNAYFYLGD--------------------YNKAMQYHKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHH
Confidence 345567778877766662 466777777776554
No 23
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=32.36 E-value=3.7e+02 Score=26.29 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHh
Q 046615 141 SVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAA 187 (409)
Q Consensus 141 sVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AA 187 (409)
.+++++|.+|....+ ..+|..+|++|-
T Consensus 138 ~a~~~lg~~~~~~g~--------------------~~~A~~~~~~al 164 (474)
T 4abn_A 138 EAWNQLGEVYWKKGD--------------------VTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHHHTC--------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Confidence 456777766666651 567888887774
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=32.26 E-value=2e+02 Score=23.15 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHh
Q 046615 138 EILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAA 187 (409)
Q Consensus 138 E~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AA 187 (409)
|-..|.+|+|..|.+.++ ..+|..+|++|-
T Consensus 3 e~~~iy~~lG~~~~~~g~--------------------~~~A~~~~~~al 32 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGD--------------------FDGAIRAYKKVL 32 (184)
T ss_dssp -CHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Confidence 456788999988888872 578889998874
No 25
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=28.76 E-value=1.9e+02 Score=21.80 Aligned_cols=117 Identities=10% Similarity=-0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCH
Q 046615 136 WYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTE 215 (409)
Q Consensus 136 ~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~ 215 (409)
....+.+++++|.++....+ ..+|..+|++|--++.-. +-..
T Consensus 45 ~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~a~~~~~~~------------------~~~~ 86 (164)
T 3ro3_A 45 KAAERIAYSNLGNAYIFLGE--------------------FETASEYYKKTLLLARQL------------------KDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHT------------------TCHH
T ss_pred chHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHh------------------CCcH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 046615 216 GVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAY 295 (409)
Q Consensus 216 ~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~ 295 (409)
....++..++......=.+.+|+ .+|.+|.+.....+..... +.++
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~------------------~~~~~a~~~~~~~~~~~~~----------------~~~~ 132 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAI------------------DYHLKHLAIAQELKDRIGE----------------GRAC 132 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHH------------------HHHHHHHHHHHHTTCHHHH----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH------------------HHHHHHHHHHHHccchHhH----------------HHHH
Q ss_pred HHhhhhcccCCCCCcHHHHHHHHHHHHHHHHH
Q 046615 296 YLHGLILDEGKTEGCSEMAAAALRAADEFLKE 327 (409)
Q Consensus 296 y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lke 327 (409)
+..|..... .+++-+|+..++.|.+..++
T Consensus 133 ~~la~~~~~---~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 133 WSLGNAYTA---LGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHH---HTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH---ccCHHHHHHHHHHHHHHHHH
No 26
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=27.36 E-value=13 Score=35.36 Aligned_cols=63 Identities=21% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCc
Q 046615 290 AKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPV 368 (409)
Q Consensus 290 ~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rd 368 (409)
-.|....-.|..+|. +++|.+|+.+.+.|.+++-.+.+.-. .+..+ +.+..++.+.+.|||..
T Consensus 21 ~~Ai~lv~~AVe~D~---~g~y~eAl~lY~eaIe~Ll~alk~e~-----d~~~k--------~~lr~Ki~eYl~RAE~L 83 (257)
T 2ymb_A 21 TAAATVLKRAVELDS---ESRYPQALVCYQEGIDLLLQVLKGTK-----DNTKR--------CNLREKISKYMDRAENI 83 (257)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHhCC-----CHHHH--------HHHHHHHHHHHHHHHHH
Confidence 357788889999999 99999999999999998888765421 11111 34556666666665543
No 27
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=27.02 E-value=1.4e+02 Score=30.30 Aligned_cols=56 Identities=9% Similarity=-0.165 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHH
Q 046615 137 YEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEG 216 (409)
Q Consensus 137 fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~ 216 (409)
-+.+..++|||.+|...++ ..+|..+|++|-.+++- ++. .=.+.
T Consensus 390 p~~a~~l~nLa~~~~~~G~--------------------~~eA~~~~~~Al~i~~~----~lG------------~~Hp~ 433 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGH--------------------IEVGHGMICKAYAILLV----THG------------PSHPI 433 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHH----HTC------------TTSHH
T ss_pred HHHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHH----HhC------------CCChH
Confidence 4678889999999888872 68899999999988843 442 23567
Q ss_pred HHHHHHHHHHHHHH
Q 046615 217 VLRAFCMQSLGQGV 230 (409)
Q Consensus 217 ~L~aL~~~~LAQAQ 230 (409)
|.+.+ .||+|++
T Consensus 434 ~~~~~--~~l~~~~ 445 (490)
T 3n71_A 434 TKDLE--AMRMQTE 445 (490)
T ss_dssp HHHHH--HHHHHHH
T ss_pred HHHHH--HHHHHHH
Confidence 77766 5666665
No 28
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=26.50 E-value=5.1e+02 Score=26.08 Aligned_cols=121 Identities=8% Similarity=-0.042 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCC
Q 046615 134 NSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDL 213 (409)
Q Consensus 134 sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DL 213 (409)
.-+-..+.++.|+|.+|...+. ..+|..++++|--++ +.+++ .-
T Consensus 345 ~~Hp~~a~~~~nLa~~y~~~g~--------------------~~eA~~~~~~aL~i~----~~~lG------------~~ 388 (490)
T 3n71_A 345 DTNLYVLRLLSIASEVLSYLQA--------------------YEEASHYARRMVDGY----MKLYH------------HN 388 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHH----HHHSC------------TT
T ss_pred CCCHHHHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHHH----HHHcC------------CC
Confidence 3345688999999999888772 578999999998776 45554 45
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHH
Q 046615 214 TEGVLRAFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAA 293 (409)
Q Consensus 214 s~~~L~aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~ 293 (409)
+++|..+|.+++...-. .++ . -++..+|.+|++.....= +..|-.....+.. +
T Consensus 389 Hp~~a~~l~nLa~~~~~---------~G~--------~-~eA~~~~~~Al~i~~~~l-----G~~Hp~~~~~~~~----l 441 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWH---------AGH--------I-EVGHGMICKAYAILLVTH-----GPSHPITKDLEAM----R 441 (490)
T ss_dssp CHHHHHHHHHHHHHHHH---------TTC--------H-HHHHHHHHHHHHHHHHHT-----CTTSHHHHHHHHH----H
T ss_pred CHHHHHHHHHHHHHHHH---------CCC--------H-HHHHHHHHHHHHHHHHHh-----CCCChHHHHHHHH----H
Confidence 88999999888765432 111 1 456688999988776642 2333444444422 2
Q ss_pred HHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Q 046615 294 AYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTC 332 (409)
Q Consensus 294 A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~ 332 (409)
++.+ .+...++.|+..+..+...+
T Consensus 442 ~~~~---------------~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 442 MQTE---------------MELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 2222 24556778888888877665
No 29
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=24.57 E-value=4.2e+02 Score=25.10 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHH
Q 046615 134 NSWYEILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFA 193 (409)
Q Consensus 134 sl~fE~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l 193 (409)
.-..+.+..++++|..+....+ ..+|..+|++|--++...
T Consensus 217 ~~~~~~a~~~~~~g~~~~~~g~--------------------~~~Ai~~y~kAl~~~~~~ 256 (370)
T 1ihg_A 217 DKILLISEDLKNIGNTFFKSQN--------------------WEMAIKKYTKVLRYVEGS 256 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHHhhcC
Confidence 3456777888888876665551 578999999998877654
No 30
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=23.60 E-value=3.8e+02 Score=23.67 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHH
Q 046615 138 EILSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLD 191 (409)
Q Consensus 138 E~asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~ 191 (409)
..+.+++|+|.+|....+ ..+|..+|++|--+++
T Consensus 153 ~~~~~~~~lg~~y~~~~~--------------------~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGY--------------------LKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHH
Confidence 357788999988887772 5789999999987764
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=22.97 E-value=4.3e+02 Score=24.67 Aligned_cols=117 Identities=9% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCCccCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCccccCCCCCCCCHHHHH
Q 046615 140 LSVLQMMTMLSLSQANLLLLPKTSTDGYQSKVSVECRRESIDMFLKAAGYLDFAVNNVLPQLPPEIRKNLPMDLTEGVLR 219 (409)
Q Consensus 140 asVlfNiAal~s~~A~s~~~~~~~~dg~~~r~s~e~lK~A~~~f~~AAG~F~~l~~~vl~~~~~~~~~~~p~DLs~~~L~ 219 (409)
+.+..++|.++...++ -++|..+|++|--++.-.... +.++..+.
T Consensus 51 a~~yn~Lg~~~~~~G~--------------------~~eAl~~~~kAl~~~~~~~~~---------------~~~~~~~~ 95 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQ--------------------NEAALECLRKAEELIQQEHAD---------------QAEIRSLV 95 (472)
T ss_dssp CHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHSGG---------------GCTTTTHH
T ss_pred HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHhcCcc---------------ccchHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 046615 220 AFCMQSLGQGVDVQLGMAIDSVNATVAVKRRFACELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHG 299 (409)
Q Consensus 220 aL~~~~LAQAQEv~~~kAi~~~k~~~sliakLA~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~g 299 (409)
++.+++..--.-=.+.+|+. +|++|.+......-...... +-.++..|
T Consensus 96 ~~~nla~~y~~~g~~~~A~~------------------~~~ka~~i~~~~~~~~~~~~--------------~~~~~~~g 143 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQI------------------YVDKVKHVCEKFSSPYRIES--------------PELDCEEG 143 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHH------------------HHHHHHHHHHHSCCSSCCCC--------------HHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHH------------------HHHHHHHHhHhcccccchhh--------------HHHHHHHH
Q ss_pred hhcccCCCCCcHHHHHHHHHHHHHH
Q 046615 300 LILDEGKTEGCSEMAAAALRAADEF 324 (409)
Q Consensus 300 l~l~e~~~~~k~GeaIa~L~~A~~~ 324 (409)
..+.. .+.+.|-+|+.+++.|.+.
T Consensus 144 ~~~~~-~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 144 WTRLK-CGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp HHHHH-HCTTHHHHHHHHHHHHHHH
T ss_pred HHHHH-HccccHHHHHHHHHHHHHh
Done!