Query 046615
Match_columns 409
No_of_seqs 173 out of 237
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 04:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046615.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046615hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wfda_ a.7.14.1 (A:) Hypothet 69.8 2.9 0.00021 31.5 4.9 66 289-370 12-77 (93)
2 d1wr0a1 a.7.14.1 (A:5-81) Vacu 58.7 7.4 0.00054 28.0 5.2 65 291-370 10-74 (77)
3 d2hr2a1 a.118.8.8 (A:2-157) Hy 47.1 26 0.0019 27.0 7.3 62 253-327 26-87 (156)
4 d2crba1 a.7.16.1 (A:8-90) Nucl 45.7 7.4 0.00054 28.9 3.2 34 295-331 11-44 (83)
5 d1tjca_ a.118.8.1 (A:) Prolyl 34.1 70 0.0051 22.3 8.7 53 254-324 23-75 (95)
6 d2hr2a1 a.118.8.8 (A:2-157) Hy 25.2 1.3E+02 0.0094 22.5 9.2 61 253-327 72-132 (156)
7 d2c2la1 a.118.8.1 (A:24-224) S 23.9 79 0.0057 24.1 6.5 27 294-323 74-100 (201)
8 d2fe0a1 b.134.1.1 (A:1-131) Sm 23.3 24 0.0018 28.1 3.0 25 1-25 1-27 (131)
9 d2fbna1 a.118.8.1 (A:22-174) P 19.2 47 0.0034 25.4 4.0 28 294-324 103-130 (153)
10 d2ff4a2 a.118.8.3 (A:105-283) 17.0 1.3E+02 0.0092 23.8 6.5 28 294-324 103-130 (179)
No 1
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=69.81 E-value=2.9 Score=31.55 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCc
Q 046615 289 EAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPV 368 (409)
Q Consensus 289 ~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rd 368 (409)
..+|+...-.++.+|+ .++|-+|+-..+.|.+.|-.+.+.-. .+ ..=+.|..+|.+-+.|++..
T Consensus 12 ~~~A~~l~~~Av~~D~---~g~y~eA~~~Y~~aie~l~~~~~~e~----------~~---~~k~~l~~k~~eYl~RAE~L 75 (93)
T d1wfda_ 12 STAAVAVLKRAVELDA---ESRYQQALVCYQEGIDMLLQVLKGTK----------ES---SKRCVLRTKISGYMDRAENI 75 (93)
T ss_dssp HHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTCC----------CH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHhhccC----------CH---HHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999 99999999999999999888875311 11 11235678888888888876
Q ss_pred CC
Q 046615 369 NP 370 (409)
Q Consensus 369 Nd 370 (409)
.+
T Consensus 76 K~ 77 (93)
T d1wfda_ 76 KK 77 (93)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 2
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.70 E-value=7.4 Score=27.99 Aligned_cols=65 Identities=12% Similarity=0.043 Sum_probs=50.2
Q ss_pred HHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCchhhhHHHHHhhHhhHhhhcCcCC
Q 046615 291 KAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMTCESFHMTPPLSRNPPLWGTSKYLSEKIPKDISSRLPVNP 370 (409)
Q Consensus 291 ~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~~~~f~~~~~~~~~p~~~~~~k~L~~~I~~~l~ra~rdNd 370 (409)
+|.....++..+|. .++|-+|+-....|.+.+..+.+.... +|. .=+.+..+|.+-+.||+..-+
T Consensus 10 ~A~~l~~~Av~~D~---~~~y~~A~~~Y~~a~~~l~~~l~~e~~---------~~~---~k~~l~~k~~~Yl~RAE~LK~ 74 (77)
T d1wr0a1 10 KAIDLASKAAQEDK---AGNYEEALQLYQHAVQYFLHVVKYEAQ---------GDK---AKQSIRAKCTEYLDRAEKLKE 74 (77)
T ss_dssp HHHHHHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCC---------TGG---GGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHhccCC---------CHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 57888889999999 999999999999999999888765210 111 114578999999999987654
No 3
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}
Probab=47.11 E-value=26 Score=26.97 Aligned_cols=62 Identities=15% Similarity=-0.007 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHH
Q 046615 253 CELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKE 327 (409)
Q Consensus 253 ~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lke 327 (409)
-+....|.+|.+...+.+-...+ +...+.|.+|.-.|..+.. -++|.+++..++.|..++..
T Consensus 26 ~~Ai~~y~~Al~i~~~~~~~~~~----------~~~~~~a~~~~nlg~~~~~---lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 26 DEAAANCRRAMEISHTMPPEEAF----------DHAGFDAFCHAGLAEALAG---LRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCC----------CHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhhhhhc----------ccchhHHHHHHHHHHHHHH---cCccchhhHhhhhhhhcccc
Confidence 45668899998877776522222 1223345666666666666 67777787777777766543
No 4
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.71 E-value=7.4 Score=28.93 Aligned_cols=34 Identities=24% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 046615 295 YYLHGLILDEGKTEGCSEMAAAALRAADEFLKESKMT 331 (409)
Q Consensus 295 ~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lkea~~~ 331 (409)
|-+.+--+.. +++|-|||-|.+.|.+++.+|.+.
T Consensus 11 ~~RrAer~l~---~~rydeAIech~kA~~yl~eA~kl 44 (83)
T d2crba1 11 QSRRADRLLA---AGKYEEAISCHRKATTYLSEAMKL 44 (83)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4566777777 899999999999999999999875
No 5
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.06 E-value=70 Score=22.33 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 046615 254 ELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEF 324 (409)
Q Consensus 254 e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~ 324 (409)
++..+|++|.+.....+. .|.. ++-+++..|..... .++|.+|+...+.|.+.
T Consensus 23 ~A~~~~~~Al~~~~~~~~--~~~~-------------~~~~l~~Lg~~~~~---~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 23 HTELWMEQALRQLDEGEI--STID-------------KVSVLDYLSYAVYQ---QGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHHTTCC--CSSC-------------HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhc--cCcc-------------HHHHHHHHhhHHHh---cCChHHHHHHHHHHHHh
Confidence 445678888877665441 2211 23445555555555 56677777777776653
No 6
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}
Probab=25.16 E-value=1.3e+02 Score=22.54 Aligned_cols=61 Identities=21% Similarity=0.136 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCcHHHHHHHHHHHHHHHHH
Q 046615 253 CELVKYWHEAQENIVNLPLANGWGDKHRLFVRWKYAEAKAAAYYLHGLILDEGKTEGCSEMAAAALRAADEFLKE 327 (409)
Q Consensus 253 ~e~s~~Y~~A~~~l~~~~i~~~w~~k~~~~~~~K~~~~~A~A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~lke 327 (409)
-+....|++|.+......- .+...+.. .+-+|+..|.++.+ -+++-+|+..++.|.++..+
T Consensus 72 ~~A~~~~~~al~~~~~~~~--~~~~~~~~---------~~~a~~~~g~~~~~---lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 72 DEALHSADKALHYFNRRGE--LNQDEGKL---------WISAVYSRALALDG---LGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHHHCC--TTSTHHHH---------HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH
T ss_pred chhhHhhhhhhhccccccc--ccccccch---------hHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHhhHH
Confidence 3445778888877665331 11111111 13467888888888 77888899888888877544
No 7
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.94 E-value=79 Score=24.07 Aligned_cols=27 Identities=26% Similarity=0.148 Sum_probs=15.9
Q ss_pred HHHHhhhhcccCCCCCcHHHHHHHHHHHHH
Q 046615 294 AYYLHGLILDEGKTEGCSEMAAAALRAADE 323 (409)
Q Consensus 294 A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~ 323 (409)
||++.|.++.. -++|-+|+..++.|.+
T Consensus 74 a~~~lg~~~~~---l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 74 AHFFLGQCQLE---MESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHH
Confidence 35555555555 5566666666666554
No 8
>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1 {Leishmania major [TaxId: 5664]}
Probab=23.25 E-value=24 Score=28.10 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=14.6
Q ss_pred CCccccccC-CCCCCCcCCCCcC-cEE
Q 046615 1 MGCFISTPN-APGETRRKPKNVG-EIA 25 (409)
Q Consensus 1 mgc~~s~~~-~~~~~~~~~~~~~-~~~ 25 (409)
|||+.|+.. ++.=.-.+|...| ||+
T Consensus 1 mgc~~s~~~~~v~f~~G~P~v~G~~v~ 27 (131)
T d2fe0a1 1 MGCGASSENSSVTYVNGRPTFVGEEVT 27 (131)
T ss_dssp CCCSSCCCSSSCCCSSCCCSCCCSEEE
T ss_pred CCCccCCCCCceEEECCCCccccCEEE
Confidence 999998542 2221334566667 554
No 9
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Probab=19.22 E-value=47 Score=25.43 Aligned_cols=28 Identities=29% Similarity=0.172 Sum_probs=19.7
Q ss_pred HHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 046615 294 AYYLHGLILDEGKTEGCSEMAAAALRAADEF 324 (409)
Q Consensus 294 A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~ 324 (409)
|||+.|.++.. -+++.+|+..++.|.++
T Consensus 103 a~~~~g~~~~~---lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 103 ALYKLGVANMY---FGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHH---HTCHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHH---cCCHHHHHHHHHHHHHh
Confidence 67777777777 66777777777666653
No 10
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.01 E-value=1.3e+02 Score=23.80 Aligned_cols=28 Identities=11% Similarity=-0.148 Sum_probs=12.9
Q ss_pred HHHHhhhhcccCCCCCcHHHHHHHHHHHHHH
Q 046615 294 AYYLHGLILDEGKTEGCSEMAAAALRAADEF 324 (409)
Q Consensus 294 A~y~~gl~l~e~~~~~k~GeaIa~L~~A~~~ 324 (409)
+|+..+..+.. .+++++|+..++.+...
T Consensus 103 ~~~~l~~al~~---~Gr~~eAl~~y~~~~~~ 130 (179)
T d2ff4a2 103 LWTQLITAYYL---SDRQSDALGAYRRVKTT 130 (179)
T ss_dssp HHHHHHHHHHT---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hcCHHHHHHHHHHHHHH
Confidence 34444444444 44555555544444443
Done!