Query 046619
Match_columns 239
No_of_seqs 108 out of 223
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 04:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y39_A Nickel and cobalt resis 97.6 0.0019 6.6E-08 50.9 12.8 90 113-219 20-112 (118)
2 3itf_A Periplasmic adaptor pro 96.0 0.041 1.4E-06 44.6 9.5 89 113-218 45-133 (145)
3 3oeo_A Spheroplast protein Y; 94.6 0.018 6.1E-07 46.2 2.7 93 109-219 30-122 (138)
4 3o39_A Periplasmic protein rel 94.5 0.04 1.4E-06 42.6 4.5 84 113-213 17-100 (108)
5 3lay_A Zinc resistance-associa 92.6 1.3 4.4E-05 36.8 10.8 76 112-201 66-141 (175)
6 2ke4_A CDC42-interacting prote 59.3 52 0.0018 24.5 9.9 45 107-152 4-53 (98)
7 3v22_V Ribosome modulation fac 36.8 4 0.00014 28.3 -1.3 18 79-96 35-52 (61)
8 2jrm_A Ribosome modulation fac 35.1 4.4 0.00015 28.4 -1.3 18 76-94 33-50 (65)
9 1ykh_B RNA polymerase II holoe 34.4 1.3E+02 0.0045 23.3 7.0 102 38-147 6-119 (132)
10 1yke_B RNA polymerase II holoe 33.4 1.4E+02 0.0047 23.8 7.2 41 108-148 80-120 (151)
11 2zzd_B Thiocyanate hydrolase s 25.9 1.2E+02 0.0041 24.5 5.6 37 11-52 107-143 (157)
12 3l9k_W Dynein intermediate cha 23.7 92 0.0032 19.4 3.5 16 124-139 18-33 (38)
13 1zbd_B Rabphilin-3A; G protein 22.1 1.1E+02 0.0037 23.8 4.5 44 107-150 3-46 (134)
14 1umd_A E1-alpha, 2-OXO acid de 21.0 3.2E+02 0.011 24.2 8.1 65 10-76 285-351 (367)
No 1
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.55 E-value=0.0019 Score=50.88 Aligned_cols=90 Identities=16% Similarity=0.036 Sum_probs=71.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhHH
Q 046619 113 ELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCV 192 (239)
Q Consensus 113 ~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~L 192 (239)
+||++|-..|+.+...-.....+|..+|...-..+++.... ..++++.+..|++..-. ..-.|
T Consensus 20 ~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~----------~~~~~p~V~aaid~~h~-------~mG~L 82 (118)
T 2y39_A 20 PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAK----------NPAWSPEVEAATQEVER-------AAGDL 82 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCSCCHHHHHHHHHHHH-------HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccccCHHHHHHHHHHHH-------HHHHH
Confidence 69999999999999999999999999999999999887642 12355777888743333 44458
Q ss_pred HHHH---HHhhhhcCChHHHHHHHHHHHHH
Q 046619 193 RLKT---LKGILDVLSTKQSVDFLAGTSIL 219 (239)
Q Consensus 193 R~~T---L~~~~~iLt~~QaA~fL~A~~e~ 219 (239)
+..| +-.|..||||-|+..|=-.+.+-
T Consensus 83 QkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 83 QRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899 77789999999999997666543
No 2
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=96.04 E-value=0.041 Score=44.60 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=60.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhHH
Q 046619 113 ELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCV 192 (239)
Q Consensus 113 ~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~L 192 (239)
+||++|...|..|....+.+...++. +.- +.+-+.+ .++..+ ++++...++.+...-.+.--.
T Consensus 45 ~LTdeQkqqir~L~~~~r~~~~~~~~--~~r-~~l~~Li-----------~ad~fD---eaa~ral~~~~~~~~~e~~v~ 107 (145)
T 3itf_A 45 SLTEHQRQQMRDLMQQARHEQPPVNV--SEL-ETMHRLV-----------TAENFD---ENAVRAQAEKMANEQIARQVE 107 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCCCH--HHH-HHHHHHH-----------TCSSCC---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhccH--HHH-HHHHHHH-----------ccCCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999988876554421 111 1111111 122333 556666667777777777778
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHH
Q 046619 193 RLKTLKGILDVLSTKQSVDFLAGTSI 218 (239)
Q Consensus 193 R~~TL~~~~~iLt~~QaA~fL~A~~e 218 (239)
|.++-.+|..||||-|-+.|---..+
T Consensus 108 r~k~~~qiy~vLTPEQk~ql~e~~~~ 133 (145)
T 3itf_A 108 MAKVRNQMYRLLTPEQQAVLNEKHQQ 133 (145)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 89999999999999999998764443
No 3
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=94.57 E-value=0.018 Score=46.16 Aligned_cols=93 Identities=22% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHH
Q 046619 109 GSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKA 188 (239)
Q Consensus 109 ~~l~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~ 188 (239)
..| +||++|...|..|.+..+..-... +....+.+.+.+. .+..+ +.++...++.+...-.+
T Consensus 30 ~~L-~LT~eQ~~qir~i~~~~r~~~~~~---~~~~r~~l~~Li~-----------a~~fD---eaav~al~~~~~~~~~e 91 (138)
T 3oeo_A 30 KDL-NLTDAQKQQIREIMKGQRDQMKRP---PLEERRAMHDIIT-----------SDTFD---KVKAEAQIAKMEEQRKA 91 (138)
T ss_dssp CCS-CCCTTHHHHHHHHHHHHSSSSCCC---CTTHHHHHHHHHT-----------CSSCC---HHHHHHHHGGGSHHHHH
T ss_pred hcC-CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhc-----------cCCCC---HHHHHHHHHHHHHHHHH
Confidence 345 499999999999988776543211 1111122222111 11223 44455555666666666
Q ss_pred HhHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 046619 189 ADCVRLKTLKGILDVLSTKQSVDFLAGTSIL 219 (239)
Q Consensus 189 AD~LR~~TL~~~~~iLt~~QaA~fL~A~~e~ 219 (239)
.-..|.++..+|..||||-|-+.|---..+-
T Consensus 92 ~~~~~~~~~~~~~~vLTPEQr~q~~~~~~kr 122 (138)
T 3oeo_A 92 NMLAHMETQNKIYNILTPEQKKQFNANFEKR 122 (138)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6667999999999999999999987765553
No 4
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=94.51 E-value=0.04 Score=42.61 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=51.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhHH
Q 046619 113 ELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADCV 192 (239)
Q Consensus 113 ~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~L 192 (239)
+||++|...|-.|....+.+-+..+. +.- +.+-+.+. .+..+ +.++...++.+...-.+.---
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~--~~r-~~m~~Li~-----------ad~FD---Eaaar~l~~~~~~~~~e~~v~ 79 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPL--EER-RAMHDIIA-----------SDTFD---KAKAEAQIAKMEEQRKANMLA 79 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCH--HHH-HHHHHHHS-----------SSSCC---HHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccH--HHH-HHHHHHhc-----------cCCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999887766432221 111 11111110 12233 344444444444444444456
Q ss_pred HHHHHHhhhhcCChHHHHHHH
Q 046619 193 RLKTLKGILDVLSTKQSVDFL 213 (239)
Q Consensus 193 R~~TL~~~~~iLt~~QaA~fL 213 (239)
|.++=.+|..||||-|-+.|-
T Consensus 80 ~~r~~~qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 80 HMETQNKIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 778999999999999998864
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=92.56 E-value=1.3 Score=36.80 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=50.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCChhhHHHHHHHHhHHhHHHHHHHHhH
Q 046619 112 AELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRKMVELARLTSRLSNGEVDGLVEVALKGLLSGLEKVMKAADC 191 (239)
Q Consensus 112 ~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~~~~~~~~~~~~g~~~~~~~~~a~~~~l~~L~~~l~~AD~ 191 (239)
-+||++|..++..|+++-+.+-.+|.+.+...++.+.+... .++++ +.++....+++..+=.+-..
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~-----------a~~~D---eakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT-----------ASSPD---TAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------SSSCC---HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999888888887766543 22334 33333334444444445555
Q ss_pred HHHHHHHhhh
Q 046619 192 VRLKTLKGIL 201 (239)
Q Consensus 192 LR~~TL~~~~ 201 (239)
.|.+.-.+|.
T Consensus 132 ~R~k~~~em~ 141 (175)
T 3lay_A 132 QRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666653
No 6
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=59.28 E-value=52 Score=24.46 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=35.4
Q ss_pred CCCCCCCchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 046619 107 GGGSLAELTEQQL-----RKIEELRLKIRLEEEKVEREMERQQVALADRKM 152 (239)
Q Consensus 107 ~~~~l~~Ls~~Ql-----~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~~ 152 (239)
...+++.|+++|. .+|.+|+..+.++.++ .+++.+++......|.
T Consensus 4 ~~~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~ 53 (98)
T 2ke4_A 4 MTEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQ 53 (98)
T ss_dssp CCSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGG
T ss_pred cchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCc
Confidence 3568889999985 6788888888888877 6788888888877663
No 7
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=36.85 E-value=4 Score=28.33 Aligned_cols=18 Identities=22% Similarity=0.746 Sum_probs=12.2
Q ss_pred HHHHHHhcCCChhHHHHH
Q 046619 79 EMAYSWVTGWKPSIIFRL 96 (239)
Q Consensus 79 Er~flWiGG~RPS~~l~L 96 (239)
+-.-.|+||||-..--++
T Consensus 35 ~~r~~Wl~GWReg~~d~~ 52 (61)
T 3v22_V 35 NQRSQWLGGWREAMADRV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 345789999996644333
No 8
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=35.15 E-value=4.4 Score=28.44 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=11.8
Q ss_pred chHHHHHHHhcCCChhHHH
Q 046619 76 STFEMAYSWVTGWKPSIIF 94 (239)
Q Consensus 76 sp~Er~flWiGG~RPS~~l 94 (239)
++--|. .|+||||--.--
T Consensus 33 ~~~~r~-~Wl~GWRegred 50 (65)
T 2jrm_A 33 QVDARS-YWLGGWRDARDE 50 (65)
T ss_dssp SHHHHH-HHHHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHHHH
Confidence 333344 899999966433
No 9
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.42 E-value=1.3e+02 Score=23.27 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhcccchhhc--CCCCCchHHHHHHHhcCCChhHHHHHHHHhh--------hcc--C
Q 046619 38 AEQQALVSKLTSHYKEYYTVKWALAHEDVLVFY--CPVWVSTFEMAYSWVTGWKPSIIFRLVDSLR--------KTM--V 105 (239)
Q Consensus 38 ~~L~~LV~~~~~Hy~~y~~~K~~aA~~DV~~~~--s~~W~sp~Er~flWiGG~RPS~~l~Llys~~--------gl~--g 105 (239)
..|+.-|+....||......-..-|.-..|.=. .++..++.. .-|..+-..+-.++ .|+ .
T Consensus 6 TQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~--------~~~~~f~~~~~ela~dli~k~kqIe~LI 77 (132)
T 1ykh_B 6 TQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATV--------VPPEEFSNTIDELSTDIILKTRQINKLI 77 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------C--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999998887776544432222100 011111100 11111111111111 011 1
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046619 106 PGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVAL 147 (239)
Q Consensus 106 ~~~~~l~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~sl 147 (239)
-..|.++.-.+.|..+|.+|+.+...++..+-+.+.+-..-+
T Consensus 78 dsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll 119 (132)
T 1ykh_B 78 DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLM 119 (132)
T ss_dssp HHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 116777777888999999999999999998877766544433
No 10
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.41 E-value=1.4e+02 Score=23.78 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=33.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046619 108 GGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALA 148 (239)
Q Consensus 108 ~~~l~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~sla 148 (239)
.|.++.-.+.|..+|.+|+.+...+|..+-+.+.+-..-+.
T Consensus 80 LPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~ 120 (151)
T 1yke_B 80 LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 (151)
T ss_dssp CTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67787778889999999999999999988877766544443
No 11
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=25.91 E-value=1.2e+02 Score=24.48 Aligned_cols=37 Identities=8% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhhCCChHHHHHHHHHHHHhHH
Q 046619 11 EFFEKWVCQLDDYSQQLIRISKESSSEAEQQALVSKLTSHYK 52 (239)
Q Consensus 11 ~~Y~~W~~e~~~~~~eLr~al~~~~~d~~L~~LV~~~~~Hy~ 52 (239)
.+|++|+....+.+.+ +.-.+..||..-+..+...|.
T Consensus 107 sYYe~WL~ALe~lLve-----kGvit~~EL~ar~aEv~ar~~ 143 (157)
T 2zzd_B 107 PYYGRWLLTAARILVD-----KQFVTLTELHNKIVEMRERVA 143 (157)
T ss_dssp CHHHHHHHHHHHHHHH-----TTSSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHhhh
Confidence 5899999988877765 444677888888887776664
No 12
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=23.72 E-value=92 Score=19.35 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 046619 124 ELRLKIRLEEEKVERE 139 (239)
Q Consensus 124 ~Lq~~~~~~E~aLs~~ 139 (239)
=+.++++..|+||++.
T Consensus 18 F~~rsskviERAL~e~ 33 (38)
T 3l9k_W 18 FVVRAGRVIERALSEN 33 (38)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccc
Confidence 4678999999999864
No 13
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.07 E-value=1.1e+02 Score=23.83 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=29.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 046619 107 GGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADR 150 (239)
Q Consensus 107 ~~~~l~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~ 150 (239)
..++++.||++....|-++=+.-.+.|..=.+++.+|++.+.+.
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~ 46 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 46 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 46788899998888887777777777776677777777777664
No 14
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=20.98 E-value=3.2e+02 Score=24.17 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHhhhhC--CChHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhcCCCCCc
Q 046619 10 AEFFEKWVCQLDDYSQQLIRISKES--SSEAEQQALVSKLTSHYKEYYTVKWALAHEDVLVFYCPVWVS 76 (239)
Q Consensus 10 ~~~Y~~W~~e~~~~~~eLr~al~~~--~~d~~L~~LV~~~~~Hy~~y~~~K~~aA~~DV~~~~s~~W~s 76 (239)
..+|+.|.. ..-+..+++-|... .++.++..+.+.+-...++.++.-.....-|+-.+|...|..
T Consensus 285 ~~e~~~~~~--~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~ 351 (367)
T 1umd_A 285 KEEVAFWRK--KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAE 351 (367)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSS
T ss_pred HHHHHHHHc--CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCC
Confidence 467889985 45777888888553 678899999999998888877653334445555566555554
Done!