Query 046619
Match_columns 239
No_of_seqs 108 out of 223
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 04:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046619.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046619hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olma1 a.5.3.1 (A:1-75) Super 45.0 7.2 0.00052 25.5 2.8 22 108-129 2-23 (75)
2 d1ykhb1 a.252.1.1 (B:2-130) RN 44.0 37 0.0027 24.5 7.1 40 108-147 79-118 (129)
3 d1wgwa_ a.24.13.1 (A:) Signal 34.1 8.9 0.00064 26.9 1.9 47 105-151 1-47 (99)
4 d1jeqa1 a.140.2.1 (A:559-609) 23.4 20 0.0015 22.1 2.0 31 23-53 19-51 (51)
5 d1uuja_ a.221.1.1 (A:) Lissenc 23.4 31 0.0022 23.0 3.1 19 203-221 1-19 (76)
6 d1b33n_ d.30.1.1 (N:) Allophyc 22.9 20 0.0015 23.1 2.0 13 13-25 33-45 (67)
7 d1r7ha_ c.47.1.1 (A:) Glutared 20.6 15 0.0011 23.2 0.9 14 84-97 60-73 (74)
8 d1zbdb_ g.50.1.1 (B:) Effector 20.2 60 0.0044 22.7 4.5 39 112-150 1-39 (124)
9 d1a0pa2 d.163.1.1 (A:111-292) 18.2 13 0.00096 26.5 0.2 19 81-99 30-48 (182)
10 d2hv2a1 d.106.1.4 (A:287-397) 16.8 52 0.0038 22.6 3.3 32 80-124 67-98 (111)
No 1
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.98 E-value=7.2 Score=25.48 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=18.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHH
Q 046619 108 GGSLAELTEQQLRKIEELRLKI 129 (239)
Q Consensus 108 ~~~l~~Ls~~Ql~~i~~Lq~~~ 129 (239)
+|+++.||++|...|.+|+..+
T Consensus 2 ~g~~gelt~~q~~~l~elr~~l 23 (75)
T d1olma1 2 SGRVGDLSPRQKEALAKFRENV 23 (75)
T ss_dssp CSBTTBCCHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHH
Confidence 4689999999999999998764
No 2
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=44.04 E-value=37 Score=24.53 Aligned_cols=40 Identities=23% Similarity=0.275 Sum_probs=32.6
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046619 108 GGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVAL 147 (239)
Q Consensus 108 ~~~l~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~sl 147 (239)
.|.++.-.+.|+.+|..|+.+.+.+|..+.+.+.+...-+
T Consensus 79 LP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll 118 (129)
T d1ykhb1 79 LPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLM 118 (129)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888999999999999999998877776644433
No 3
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.15 E-value=8.9 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=42.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046619 105 VPGGGSLAELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADRK 151 (239)
Q Consensus 105 g~~~~~l~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~~ 151 (239)
|...++..+|+..-...+..|+.+....|..+.+-+.+++.+|-+..
T Consensus 1 ~~~~~~~a~L~~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~ALLeAD 47 (99)
T d1wgwa_ 1 GSSGSSGADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEAD 47 (99)
T ss_dssp CCCSSSCSHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcchhhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcc
Confidence 45578888999999999999999999999999999999999998753
No 4
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.36 E-value=20 Score=22.07 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=23.2
Q ss_pred hHHHHHHhhhhC--CChHHHHHHHHHHHHhHHH
Q 046619 23 YSQQLIRISKES--SSEAEQQALVSKLTSHYKE 53 (239)
Q Consensus 23 ~~~eLr~al~~~--~~d~~L~~LV~~~~~Hy~~ 53 (239)
.+++||..+.++ ..-..=..||+++..|+++
T Consensus 19 tV~~LK~~lk~~gL~~sGkKa~Li~Ri~~~l~e 51 (51)
T d1jeqa1 19 TVPMLKEACRAYGLKSGLKKQELLEALTKHFQD 51 (51)
T ss_dssp CHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhC
Confidence 679999999765 1124567899999999853
No 5
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.35 E-value=31 Score=23.04 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=16.3
Q ss_pred cCChHHHHHHHHHHHHHHH
Q 046619 203 VLSTKQSVDFLAGTSILQI 221 (239)
Q Consensus 203 iLt~~QaA~fL~A~~e~~~ 221 (239)
|||++|+.+-=-|+.+|..
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 6899999988888888875
No 6
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.93 E-value=20 Score=23.14 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=10.8
Q ss_pred HHHHHHHHhhhHH
Q 046619 13 FEKWVCQLDDYSQ 25 (239)
Q Consensus 13 Y~~W~~e~~~~~~ 25 (239)
|+.|+.||.+...
T Consensus 33 y~nWf~EQQrI~K 45 (67)
T d1b33n_ 33 YENWFREQQRIQK 45 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8999999988653
No 7
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=20.58 E-value=15 Score=23.21 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=11.0
Q ss_pred HhcCCChhHHHHHH
Q 046619 84 WVTGWKPSIIFRLV 97 (239)
Q Consensus 84 WiGG~RPS~~l~Ll 97 (239)
+||||+|-.+=+|+
T Consensus 60 ~igGf~~d~l~~L~ 73 (74)
T d1r7ha_ 60 HWSGFRPERIKQLQ 73 (74)
T ss_dssp EEESCCHHHHHHHH
T ss_pred EEeCCCHhHHHHhh
Confidence 68999998776654
No 8
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.16 E-value=60 Score=22.69 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=29.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 046619 112 AELTEQQLRKIEELRLKIRLEEEKVEREMERQQVALADR 150 (239)
Q Consensus 112 ~~Ls~~Ql~~i~~Lq~~~~~~E~aLs~~ma~lQ~slad~ 150 (239)
++||+++...|.++-++-...+..-.+++.++.+.+.+.
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~ 39 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 39 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888877776666666677888888877664
No 9
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=18.24 E-value=13 Score=26.49 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.3
Q ss_pred HHHHhcCCChhHHHHHHHH
Q 046619 81 AYSWVTGWKPSIIFRLVDS 99 (239)
Q Consensus 81 ~flWiGG~RPS~~l~Llys 99 (239)
.|+|..|+||+++..|-..
T Consensus 30 ~l~~~tG~R~~ei~~L~~~ 48 (182)
T d1a0pa2 30 EVLYATGLRVSELVGLTMS 48 (182)
T ss_dssp HHHHHHCCCHHHHTTCBGG
T ss_pred HHHHHhCCccCCcccchhh
Confidence 4678899999999987543
No 10
>d2hv2a1 d.106.1.4 (A:287-397) Hypothetical protein EF1021 {Enterococcus faecalis [TaxId: 1351]}
Probab=16.82 E-value=52 Score=22.65 Aligned_cols=32 Identities=3% Similarity=-0.096 Sum_probs=23.2
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhccCCCCCCCCCchHHHHHHHHH
Q 046619 80 MAYSWVTGWKPSIIFRLVDSLRKTMVPGGGSLAELTEQQLRKIEE 124 (239)
Q Consensus 80 r~flWiGG~RPS~~l~Llys~~gl~g~~~~~l~~Ls~~Ql~~i~~ 124 (239)
-+-+++|+.+|+.+.+ .+.+. -+++.+..++.
T Consensus 67 Ls~l~~G~~~~~~l~~------------~g~i~-~~~~~l~~L~~ 98 (111)
T d2hv2a1 67 WTQLFLGYRSAETLSF------------YERLQ-GDATIAQRLGQ 98 (111)
T ss_dssp HHHHHHTSSCHHHHHH------------TTSSE-ECHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHH------------cCCCc-CCHHHHHHHHH
Confidence 4779999999998877 55664 36666666554
Done!