BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046620
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KSI|A Chain A, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
pdb|1KSI|B Chain B, Crystal Structure Of A Eukaryotic (Pea Seedling)
Copper-Containing Amine Oxidase At 2.2a Resolution
Length = 642
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 117/254 (46%), Gaps = 63/254 (24%)
Query: 1 MGNYDCIFDWELQTDGLIL---------------IKNLYQVSKPGYMSGPLVCENVIGVV 45
+GN D + DWE + G I IK+ ++ + + G LV N IG+
Sbjct: 379 VGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKED--LHGKLVSANSIGIY 436
Query: 46 HDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYD--------- 96
HDHF +LD DIDG +NSF + L+ G S RKSY E +
Sbjct: 437 HDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGL 496
Query: 97 -PSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPS---------------DRNE 140
P+E V+NP+ ++ +GN G++ +P A LL P +R E
Sbjct: 497 APAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTE 556
Query: 141 QWAGGLLVYQSREDEALAVWSE-----------MWNF----------NFPVMPTVPSSFD 179
+WAGGL V SR D+ LAVW++ MW+ +FP+MP + +SF+
Sbjct: 557 KWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFE 616
Query: 180 LEPVNFFHRNPTLR 193
L P NFF RNP L+
Sbjct: 617 LRPTNFFERNPVLK 630
>pdb|1W2Z|A Chain A, Psao And Xenon
pdb|1W2Z|B Chain B, Psao And Xenon
pdb|1W2Z|C Chain C, Psao And Xenon
pdb|1W2Z|D Chain D, Psao And Xenon
Length = 649
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 117/254 (46%), Gaps = 63/254 (24%)
Query: 1 MGNYDCIFDWELQTDGLIL---------------IKNLYQVSKPGYMSGPLVCENVIGVV 45
+GN D + DWE + G I IK+ ++ + + G LV N IG+
Sbjct: 384 VGNXDNVIDWEFKASGSIKPSIALSGILEIKGTNIKHKDEIKED--LHGKLVSANSIGIY 441
Query: 46 HDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYD--------- 96
HDHF +LD DIDG +NSF + L+ G S RKSY E +
Sbjct: 442 HDHFYIYYLDFDIDGTHNSFEKTSLKTVRIKDGSSKRKSYWTTETQTAKTESDAKITIGL 501
Query: 97 -PSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPS---------------DRNE 140
P+E V+NP+ ++ +GN G++ +P A LL P +R E
Sbjct: 502 APAELVVVNPNIKTAVGNEVGYRLIPAIPAHPLLTEDDYPQIRGAFTNYNVWVTAYNRTE 561
Query: 141 QWAGGLLVYQSREDEALAVWSE-----------MWNF----------NFPVMPTVPSSFD 179
+WAGGL V SR D+ LAVW++ MW+ +FP+MP + +SF+
Sbjct: 562 KWAGGLYVDHSRGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFE 621
Query: 180 LEPVNFFHRNPTLR 193
L P NFF RNP L+
Sbjct: 622 LRPTNFFERNPVLK 635
>pdb|2WGQ|A Chain A, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
pdb|2WGQ|B Chain B, Zinc Substituted E Coli Copper Amine Oxidase, A Model For
The Precursor For 2,4,5-Trihydroxyphenylalaninequinone
Formation
Length = 727
Score = 71.2 bits (173), Expect = 4e-13, Method: Composition-based stats.
Identities = 63/259 (24%), Positives = 101/259 (38%), Gaps = 68/259 (26%)
Query: 1 MGNYDCIFDWELQTDGLILI---------------KNLY-QVSKPGYMSGPLVCENVIGV 44
+GNYD IFDW +G I I K ++ + +K G L+ N++G
Sbjct: 463 VGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGT 522
Query: 45 VHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQ--------CLNLYD 96
H H LD+D+DG NNS V + + + G PR S +++ Q +D
Sbjct: 523 THQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQKFD 581
Query: 97 PSEFHVI-NPSRRSRLGNPSGHKAVP-GGNAATLLRNTATPSDR---------------- 138
P ++ NP++ +R+GNP ++ +P G + + D
Sbjct: 582 PGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVT 641
Query: 139 ----NEQWAGGLLVYQSREDEALAVWSE-----------MWNFN----------FPVMPT 173
E++ G +S D L +S+ +W +P+MPT
Sbjct: 642 RYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPT 701
Query: 174 VPSSFDLEPVNFFHRNPTL 192
L+P NFF PTL
Sbjct: 702 EWVHTLLKPWNFFDETPTL 720
>pdb|1OAC|A Chain A, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1OAC|B Chain B, Crystal Structure Of A Quinoenzyme: Copper Amine Oxidase
Of Escherichia Coli At 2 Angstroems Resolution
pdb|1SPU|A Chain A, Structure Of Oxidoreductase
pdb|1SPU|B Chain B, Structure Of Oxidoreductase
pdb|1D6U|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6U|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Anaerobically
Reduced With Beta-Phenylethylamine
pdb|1D6Y|A Chain A, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Y|B Chain B, Crystal Structure Of E. Coli Copper-Containing Amine
Oxidase Anaerobically Reduced With Beta-Phenylethylamine
And Complexed With Nitric Oxide.
pdb|1D6Z|A Chain A, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1D6Z|B Chain B, Crystal Structure Of The Aerobically Freeze Trapped
Rate-determining Catalytic Intermediate Of E. Coli
Copper-containing Amine Oxidase.
pdb|1DYU|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1DYU|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase: X-Ray Crystallographic
Studies With Mutational Variants.
pdb|1LVN|A Chain A, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|1LVN|B Chain B, Crystal Structure Of E. Coli Amine Oxidase Complexed With
Tranylcypromine
pdb|2W0Q|A Chain A, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2W0Q|B Chain B, E. Coli Copper Amine Oxidase In Complex With Xenon
pdb|2WO0|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WO0|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|A Chain A, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOF|B Chain B, Edta Treated E. Coli Copper Amine Oxidase
pdb|2WOH|A Chain A, Strontium Soaked E. Coli Copper Amine Oxidase
pdb|2WOH|B Chain B, Strontium Soaked E. Coli Copper Amine Oxidase
Length = 727
Score = 68.2 bits (165), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 100/259 (38%), Gaps = 68/259 (26%)
Query: 1 MGNYDCIFDWELQTDGLILI---------------KNLY-QVSKPGYMSGPLVCENVIGV 44
+GN D IFDW +G I I K ++ + +K G L+ N++G
Sbjct: 463 VGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGT 522
Query: 45 VHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQ--------CLNLYD 96
H H LD+D+DG NNS V + + + G PR S +++ Q +D
Sbjct: 523 THQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQKFD 581
Query: 97 PSEFHVI-NPSRRSRLGNPSGHKAVP-GGNAATLLRNTATPSDR---------------- 138
P ++ NP++ +R+GNP ++ +P G + + D
Sbjct: 582 PGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVT 641
Query: 139 ----NEQWAGGLLVYQSREDEALAVWSE-----------MWNFN----------FPVMPT 173
E++ G +S D L +S+ +W +P+MPT
Sbjct: 642 RYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPT 701
Query: 174 VPSSFDLEPVNFFHRNPTL 192
L+P NFF PTL
Sbjct: 702 EWVHTLLKPWNFFDETPTL 720
>pdb|1QAK|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
pdb|1QAK|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-ray Crystallographic
Studies With Mutational Variants
Length = 722
Score = 68.2 bits (165), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 100/259 (38%), Gaps = 68/259 (26%)
Query: 1 MGNYDCIFDWELQTDGLILI---------------KNLY-QVSKPGYMSGPLVCENVIGV 44
+GN D IFDW +G I I K ++ + +K G L+ N++G
Sbjct: 458 VGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGT 517
Query: 45 VHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQ--------CLNLYD 96
H H LD+D+DG NNS V + + + G PR S +++ Q +D
Sbjct: 518 THQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQKFD 576
Query: 97 PSEFHVI-NPSRRSRLGNPSGHKAVP-GGNAATLLRNTATPSDR---------------- 138
P ++ NP++ +R+GNP ++ +P G + + D
Sbjct: 577 PGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVT 636
Query: 139 ----NEQWAGGLLVYQSREDEALAVWSE-----------MWNFN----------FPVMPT 173
E++ G +S D L +S+ +W +P+MPT
Sbjct: 637 RYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPT 696
Query: 174 VPSSFDLEPVNFFHRNPTL 192
L+P NFF PTL
Sbjct: 697 EWVHTLLKPWNFFDETPTL 715
>pdb|1JRQ|A Chain A, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
pdb|1JRQ|B Chain B, X-Ray Structure Analysis Of The Role Of The Conserved
Tyrosine-369 In Active Site Of E. Coli Amine Oxidase
Length = 727
Score = 67.8 bits (164), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 100/259 (38%), Gaps = 68/259 (26%)
Query: 1 MGNYDCIFDWELQTDGLILI---------------KNLY-QVSKPGYMSGPLVCENVIGV 44
+GN D IFDW +G I I K ++ + +K G L+ N++G
Sbjct: 463 VGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGT 522
Query: 45 VHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQ--------CLNLYD 96
H H LD+D+DG NNS V + + + G PR S +++ Q +D
Sbjct: 523 THQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQKFD 581
Query: 97 PSEFHVI-NPSRRSRLGNPSGHKAVP-GGNAATLLRNTATPSDR---------------- 138
P ++ NP++ +R+GNP ++ +P G + + D
Sbjct: 582 PGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVT 641
Query: 139 ----NEQWAGGLLVYQSREDEALAVWSE-----------MWNFN----------FPVMPT 173
E++ G +S D L +S+ +W +P+MPT
Sbjct: 642 RYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPT 701
Query: 174 VPSSFDLEPVNFFHRNPTL 192
L+P NFF PTL
Sbjct: 702 EWVHTLLKPWNFFDETPTL 720
>pdb|1QAF|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAF|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 67.8 bits (164), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 100/259 (38%), Gaps = 68/259 (26%)
Query: 1 MGNYDCIFDWELQTDGLILI---------------KNLY-QVSKPGYMSGPLVCENVIGV 44
+GN D IFDW +G I I K ++ + +K G L+ N++G
Sbjct: 458 VGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGT 517
Query: 45 VHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQ--------CLNLYD 96
H H LD+D+DG NNS V + + + G PR S +++ Q +D
Sbjct: 518 THQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQKFD 576
Query: 97 PSEFHVI-NPSRRSRLGNPSGHKAVP-GGNAATLLRNTATPSDR---------------- 138
P ++ NP++ +R+GNP ++ +P G + + D
Sbjct: 577 PGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVT 636
Query: 139 ----NEQWAGGLLVYQSREDEALAVWSE-----------MWNFN----------FPVMPT 173
E++ G +S D L +S+ +W +P+MPT
Sbjct: 637 RYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPT 696
Query: 174 VPSSFDLEPVNFFHRNPTL 192
L+P NFF PTL
Sbjct: 697 EWVHTLLKPWNFFDETPTL 715
>pdb|1QAL|A Chain A, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
pdb|1QAL|B Chain B, The Active Site Base Controls Cofactor Reactivity In
Escherichia Coli Amine Oxidase : X-Ray Crystallographic
Studies With Mutational Variants
Length = 721
Score = 67.8 bits (164), Expect = 4e-12, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 100/259 (38%), Gaps = 68/259 (26%)
Query: 1 MGNYDCIFDWELQTDGLILI---------------KNLY-QVSKPGYMSGPLVCENVIGV 44
+GN D IFDW +G I I K ++ + +K G L+ N++G
Sbjct: 458 VGNXDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGT 517
Query: 45 VHDHFITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQ--------CLNLYD 96
H H LD+D+DG NNS V + + + G PR S +++ Q +D
Sbjct: 518 THQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAG-GPRTSTMQVNQYNIGNEQDAAQKFD 576
Query: 97 PSEFHVI-NPSRRSRLGNPSGHKAVP-GGNAATLLRNTATPSDR---------------- 138
P ++ NP++ +R+GNP ++ +P G + + D
Sbjct: 577 PGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVT 636
Query: 139 ----NEQWAGGLLVYQSREDEALAVWSE-----------MWNFN----------FPVMPT 173
E++ G +S D L +S+ +W +P+MPT
Sbjct: 637 RYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPT 696
Query: 174 VPSSFDLEPVNFFHRNPTL 192
L+P NFF PTL
Sbjct: 697 EWVHTLLKPWNFFDETPTL 715
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1WMP|A Chain A, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1WMP|B Chain B, Crystal Structure Of Amine Oxidase Complexed With Cobalt
Ion
pdb|1AVK|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 92/251 (36%), Gaps = 55/251 (21%)
Query: 1 MGNYDCIFDWELQTDGLILIKN-----LYQVSKPGYMSGPL--VCENVIGVVHDHFITLH 53
+GNYD F W L DG I + ++ + P S + + + H H +
Sbjct: 379 IGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSAR 438
Query: 54 LDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPS----------EFHVI 103
LDM IDG N E + +Q PG ++ + L + + +
Sbjct: 439 LDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIIS 498
Query: 104 NPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWA-------------------- 143
NP ++RL P G+K + N TLL + + R +A
Sbjct: 499 NPESKNRLNEPVGYK-LHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDF 557
Query: 144 -------GGLLVY--QSR--EDEALAVWSEMWNFNF------PVMPTVPSSFDLEPVNFF 186
GL Y Q R + + + VW +F P+MP F L P FF
Sbjct: 558 VNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFF 617
Query: 187 HRNPTLRLPAD 197
R+P L +PA+
Sbjct: 618 DRSPVLDVPAN 628
>pdb|3PGB|A Chain A, Crystal Structure Of Aspergillus Nidulans Amine Oxidase
Length = 797
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 27/151 (17%)
Query: 1 MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMS----------GPLVCENVIGVVHDHFI 50
+GN D +F + DG I + +V GY+ G + +++ G +HDH +
Sbjct: 481 IGNXDYMFSYNFHMDGTIGV----EVRASGYIQSAYYANNQDFGYQIHDSLSGSMHDHVL 536
Query: 51 TLHLDMDIDGANNSFVEVHL---EKQETSPGESPR------KSYLKIEQCLNLY----DP 97
D DI G NN+ V + KQ + G R +S++ E L
Sbjct: 537 NFKADFDILGPNNTIELVSVVPVTKQFSWSGNKTRNTMQLGRSFIHSEDEARLNWGFNGQ 596
Query: 98 SEFHVINPSRRSRLGNPSGHKAVPGGNAATL 128
++ HV+N + ++ G P G++ +P A L
Sbjct: 597 TQLHVVNQDKPNKFGEPRGYRILPSAGTAHL 627
>pdb|2CWT|A Chain A, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWT|B Chain B, Catalytic Base Deletion In Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2CWU|A Chain A, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWU|B Chain B, Substrate Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|A Chain A, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2CWV|B Chain B, Product Schiff-Base Intermediate Of Copper Amine Oxidase
From Arthrobacter Globiformis
pdb|2D1W|A Chain A, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
pdb|2D1W|B Chain B, Substrate Schiff-Base Intermediate With Tyramine In Copper
Amine Oxidase From Arthrobacter Globiformis
Length = 638
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 55/251 (21%)
Query: 1 MGNYDCIFDWELQTDGLILIKN-----LYQVSKPGYMSGPL--VCENVIGVVHDHFITLH 53
+GN D F W L DG I + ++ + P S + + + H H +
Sbjct: 379 IGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSAR 438
Query: 54 LDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPS----------EFHVI 103
LDM IDG N E + +Q PG ++ + L + + +
Sbjct: 439 LDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIIS 498
Query: 104 NPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWA-------------------- 143
NP ++RL P G+K + N TLL + + R +A
Sbjct: 499 NPESKNRLNEPVGYK-LHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDF 557
Query: 144 -------GGLLVY--QSR--EDEALAVWSEMWNFNF------PVMPTVPSSFDLEPVNFF 186
GL Y Q R + + + VW +F P+MP F L P FF
Sbjct: 558 VNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFF 617
Query: 187 HRNPTLRLPAD 197
R+P L +PA+
Sbjct: 618 DRSPVLDVPAN 628
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IQX|A Chain A, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQX|B Chain B, Crystal Structure Of Cobalt-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|A Chain A, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IQY|B Chain B, Crystal Structure Of Nickel-Substituted Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|A Chain A, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1IU7|B Chain B, Holo Form Of Copper-Containing Amine Oxidase From
Arthrobacter Globiformis
pdb|1WMN|A Chain A, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMN|B Chain B, Crystal Structure Of Topaquinone-Containing Amine Oxidase
Activated By Cobalt Ion
pdb|1WMO|A Chain A, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1WMO|B Chain B, Crystal Structure Of Topaquinone-containing Amine Oxidase
Activated By Nickel Ion
pdb|1AV4|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL|A Chain A, Crystal Structures Of The Copper-Containing Amine Oxidase
From Arthrobacter Globiformis In The Holo-And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|2E2T|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Phenylhydrazine
pdb|2ZL8|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|2ZL8|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Substrate Schiff-Base
Intermediate Formed With Ethylamine
pdb|3AMO|A Chain A, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|3AMO|B Chain B, Time-Resolved X-Ray Crystal Structure Analysis Of
Enzymatic Reaction Of Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 55/251 (21%)
Query: 1 MGNYDCIFDWELQTDGLILIKN-----LYQVSKPGYMSGPL--VCENVIGVVHDHFITLH 53
+GN D F W L DG I + ++ + P S + + + H H +
Sbjct: 379 IGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSAR 438
Query: 54 LDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPS----------EFHVI 103
LDM IDG N E + +Q PG ++ + L + + +
Sbjct: 439 LDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIIS 498
Query: 104 NPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWA-------------------- 143
NP ++RL P G+K + N TLL + + R +A
Sbjct: 499 NPESKNRLNEPVGYK-LHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDF 557
Query: 144 -------GGLLVY--QSR--EDEALAVWSEMWNFNF------PVMPTVPSSFDLEPVNFF 186
GL Y Q R + + + VW +F P+MP F L P FF
Sbjct: 558 VNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFF 617
Query: 187 HRNPTLRLPAD 197
R+P L +PA+
Sbjct: 618 DRSPVLDVPAN 628
>pdb|2YX9|A Chain A, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
pdb|2YX9|B Chain B, Crystal Structure Of D298k Copper Amine Oxidase From
Arthrobacter Globiformis
Length = 638
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 55/251 (21%)
Query: 1 MGNYDCIFDWELQTDGLILIKN-----LYQVSKPGYMSGPL--VCENVIGVVHDHFITLH 53
+GN D F W L DG I + ++ + P S + + + H H +
Sbjct: 379 IGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSAR 438
Query: 54 LDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPS----------EFHVI 103
LDM IDG N E + +Q PG ++ + L + + +
Sbjct: 439 LDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIIS 498
Query: 104 NPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWA-------------------- 143
NP ++RL P G+K + N TLL + + R +A
Sbjct: 499 NPESKNRLNEPVGYK-LHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDF 557
Query: 144 -------GGLLVY--QSR--EDEALAVWSEMWNFNF------PVMPTVPSSFDLEPVNFF 186
GL Y Q R + + + VW +F P+MP F L P FF
Sbjct: 558 VNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFF 617
Query: 187 HRNPTLRLPAD 197
R+P L +PA+
Sbjct: 618 DRSPVLDVPAN 628
>pdb|1SIH|A Chain A, Agao In Covalent Complex With The Inhibitor Moba ("4-(4-
Methylphenoxy)-2-Butyn-1-Amine")
pdb|1SII|A Chain A, Agao In Covalent Complex With The Inhibitor Noba
("4-(2-Naphthyloxy)- 2-Butyn-1-Amine")
pdb|1RJO|A Chain A, Agao + Xe
pdb|2BT3|A Chain A, Agao In Complex With Ruthenium-c4-wire At 1.73 Angstroms
pdb|1W4N|A Chain A, Agao Covalent Complex With Tranylcypromine
pdb|1W4N|B Chain B, Agao Covalent Complex With Tranylcypromine
pdb|1W5Z|A Chain A, Agao Covalent Complex With Benzylhydrazine
pdb|1W6C|A Chain A, Agao Holoenzyme In A Small Cell, At 2.2 Angstroms
pdb|1W6G|A Chain A, Agao Holoenzyme At 1.55 Angstroms
pdb|2CFD|A Chain A, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFD|B Chain B, Agao In Complex With Wc4l3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Lambda Enantiomer, Data Set 3)
pdb|2CFG|A Chain A, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFG|B Chain B, Agao In Complex With Wc4d3 (Ru-Wire Inhibitor, 4-Carbon
Linker, Delta Enantiomer, Data Set 3)
pdb|2CFK|A Chain A, Agao In Complex With Wc5 (Ru-Wire Inhibitor, 5-Carbon
Linker)
pdb|2CFL|A Chain A, Agao In Complex With Wc6b (Ru-Wire Inhibitor, 6-Carbon
Linker, Data Set B)
pdb|2CFW|A Chain A, Agao In Complex With Wc7a (Ru-Wire Inhibitor, 7-Carbon
Linker, Data Set A)
pdb|2CG0|A Chain A, Agao In Complex With Wc9a (Ru-Wire Inhibitor, 9-Carbon
Linker, Data Set A)
pdb|2CG1|A Chain A, Agao In Complex With Wc11b (Ru-Wire Inhibitor, 11-Carbon
Linker, Data Set B)
pdb|3KII|A Chain A, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KII|B Chain B, Agao 5-Phenoxy-2,3-Pentadienylamine Complex
pdb|3KN4|A Chain A, Agao 6-Phenyl-2,3-Hexadienylamine Complex
Length = 646
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 55/251 (21%)
Query: 1 MGNYDCIFDWELQTDGLILIKN-----LYQVSKPGYMSGPL--VCENVIGVVHDHFITLH 53
+GN D F W L DG I + ++ + P S + + + H H +
Sbjct: 377 IGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSAR 436
Query: 54 LDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPS----------EFHVI 103
LDM IDG N E + +Q PG ++ + L + + +
Sbjct: 437 LDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIIS 496
Query: 104 NPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWA-------------------- 143
NP ++RL P G+K + N TLL + + R +A
Sbjct: 497 NPESKNRLNEPVGYK-LHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDF 555
Query: 144 -------GGLLVY--QSR--EDEALAVWSEMWNFNF------PVMPTVPSSFDLEPVNFF 186
GL Y Q R + + + VW +F P+MP F L P FF
Sbjct: 556 VNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFF 615
Query: 187 HRNPTLRLPAD 197
R+P L +PA+
Sbjct: 616 DRSPVLDVPAN 626
>pdb|2E2U|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2U|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
4-Hydroxybenzylhydrazine
pdb|2E2V|A Chain A, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
pdb|2E2V|B Chain B, Substrate Schiff-Base Analogue Of Copper Amine Oxidase
From Arthrobacter Globiformis Formed With
Benzylhydrazine
Length = 628
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 55/251 (21%)
Query: 1 MGNYDCIFDWELQTDGLILIKN-----LYQVSKPGYMSGPL--VCENVIGVVHDHFITLH 53
+GN D F W L DG I + ++ + P S + + + H H +
Sbjct: 379 IGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSAR 438
Query: 54 LDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPS----------EFHVI 103
LDM IDG N E + +Q PG ++ + L + + +
Sbjct: 439 LDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIIS 498
Query: 104 NPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWA-------------------- 143
NP ++RL P G+K + N TLL + + R +A
Sbjct: 499 NPESKNRLNEPVGYK-LHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDF 557
Query: 144 -------GGLLVY--QSR--EDEALAVWSEMWNFNF------PVMPTVPSSFDLEPVNFF 186
GL Y Q R + + + VW +F P+MP F L P FF
Sbjct: 558 VNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFF 617
Query: 187 HRNPTLRLPAD 197
R+P L +PA+
Sbjct: 618 DRSPVLDVPAN 628
>pdb|1UI7|A Chain A, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI7|B Chain B, Site-Directed Mutagenesis Of His433 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 91/251 (36%), Gaps = 55/251 (21%)
Query: 1 MGNYDCIFDWELQTDGLILIKN-----LYQVSKPGYMSGPL--VCENVIGVVHDHFITLH 53
+GNYD F W L DG I + ++ + P S + + + H +
Sbjct: 379 IGNYDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQAIFSAR 438
Query: 54 LDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPS----------EFHVI 103
LDM IDG N E + +Q PG ++ + L + + +
Sbjct: 439 LDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIIS 498
Query: 104 NPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWA-------------------- 143
NP ++RL P G+K + N TLL + + R +A
Sbjct: 499 NPESKNRLNEPVGYK-LHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDF 557
Query: 144 -------GGLLVY--QSR--EDEALAVWSEMWNFNF------PVMPTVPSSFDLEPVNFF 186
GL Y Q R + + + VW +F P+MP F L P FF
Sbjct: 558 VNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFF 617
Query: 187 HRNPTLRLPAD 197
R+P L +PA+
Sbjct: 618 DRSPVLDVPAN 628
>pdb|1UI8|A Chain A, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
pdb|1UI8|B Chain B, Site-directed Mutagenesis Of His592 Involved In Binding Of
Copper Ion In Arthrobacter Globiformis Amine Oxidase
Length = 638
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 90/251 (35%), Gaps = 55/251 (21%)
Query: 1 MGNYDCIFDWELQTDGLILIKN-----LYQVSKPGYMSGPL--VCENVIGVVHDHFITLH 53
+GN D F W L DG I + ++ + P S + + + H H +
Sbjct: 379 IGNXDYGFYWYLYLDGTIEFEAKATGVVFTSAFPEGGSDNISQLAPGLGAPFHQHIFSAR 438
Query: 54 LDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPS----------EFHVI 103
LDM IDG N E + +Q PG ++ + L + + +
Sbjct: 439 LDMAIDGFTNRVEEEDVVRQTMGPGNERGNAFSRKRTVLTRESEAVREADARTGRTWIIS 498
Query: 104 NPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWA-------------------- 143
NP ++RL P G+K + N TLL + + R +A
Sbjct: 499 NPESKNRLNEPVGYK-LHAHNQPTLLADPGSSIARRAAFATKDLWVTRYADDERYPTGDF 557
Query: 144 -------GGLLVY--QSR--EDEALAVWSEMWNFNF------PVMPTVPSSFDLEPVNFF 186
GL Y Q R + + + VW F P+MP F L P FF
Sbjct: 558 VNQHSGGAGLPSYIAQDRDIDGQDIVVWHTFGLTAFPRVEDWPIMPVDTVGFKLRPEGFF 617
Query: 187 HRNPTLRLPAD 197
R+P L +PA+
Sbjct: 618 DRSPVLDVPAN 628
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 77/210 (36%), Gaps = 50/210 (23%)
Query: 34 GPLVCENVIGVVHDHFITLHLDMDIDGANNSFV---EVHLEKQET--------------- 75
G V V+ H H ++ +D +DG N+ V + +EK
Sbjct: 423 GTNVGPRVMAAYHQHMLSFRIDPAVDGYENTVVFDDVIRMEKNTKLNPYNVGFVTERTVV 482
Query: 76 -SPG---ESP--RKSYLKI-EQCLN--LYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAA 126
PG +SP +SY I E +N P + ++ P+R+ L + + A
Sbjct: 483 EKPGYVEQSPFTNRSYKIINENKINPISKKPVAYKIMMPARQMLLADEDSYNNKRAQFAT 542
Query: 127 TLLRNTATPSDRNEQWAGGLLVYQSREDEALAVWSE-----------MWNF--------- 166
+ T NE +A G QS+ D L VW+ +W
Sbjct: 543 QQV--WVTKYRDNELYAAGEFTNQSQTDTGLGVWARRDENVRNDNPVVWATLGFTHIPRV 600
Query: 167 -NFPVMPTVPSSFDLEPVNFFHRNPTLRLP 195
+FPVMP L P FF +NP L +P
Sbjct: 601 EDFPVMPVEAHEIALVPFGFFDKNPALSVP 630
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 29/182 (15%)
Query: 1 MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMS------------GPLVCENVIGVVHDH 48
+GN D F ++ DG + + V GY+ G + + + G HDH
Sbjct: 475 IGNXDYNFLYKFFLDGTLEV----SVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDH 530
Query: 49 FITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPSEFHVIN---- 104
+ +D+D+ G N + ++ + +P Y + + + +F+ IN
Sbjct: 531 VLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPEN 590
Query: 105 ---------PSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDE 155
+ GNP + +PGG + + + WA L +DE
Sbjct: 591 GQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDE 650
Query: 156 AL 157
L
Sbjct: 651 EL 652
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 29/182 (15%)
Query: 1 MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMS------------GPLVCENVIGVVHDH 48
+GN D F ++ DG + + V GY+ G + + + G HDH
Sbjct: 435 IGNXDYNFLYKFFLDGTLEV----SVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDH 490
Query: 49 FITLHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIEQCLNLYDPSEFHVIN---- 104
+ +D+D+ G N + ++ + +P Y + +++ +F+ IN
Sbjct: 491 VLNYKVDLDVGGTKNRASQYVMKDVDVEYPWAPGTVYNTKQIAREVFENEDFNGINWPEN 550
Query: 105 ---------PSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDE 155
+ GNP + +PGG + + + WA L +D
Sbjct: 551 GQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDT 610
Query: 156 AL 157
L
Sbjct: 611 EL 612
>pdb|3HI7|A Chain A, Crystal Structure Of Human Diamine Oxidase
pdb|3HI7|B Chain B, Crystal Structure Of Human Diamine Oxidase
pdb|3HIG|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HIG|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Berenil
pdb|3HII|A Chain A, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3HII|B Chain B, Crystal Structure Of Human Diamine Oxidase In Complex With
The Inhibitor Pentamidine
pdb|3K5T|A Chain A, Crystal Structure Of Human Diamine Oxidase In Space Group
C2221
pdb|3MPH|A Chain A, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
pdb|3MPH|B Chain B, The Structure Of Human Diamine Oxidase Complexed With An
Inhibitor Aminoguanidine
Length = 731
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 3 NYDCIFDWELQTDGLILIK-------NLYQVSKPGYMSGPLVCENVIGVVHDHFITLHLD 55
N D I+D+ +G++ K + + G G + ++IG +H H + +D
Sbjct: 440 NXDYIWDFIFYPNGVMEAKMHATGYVHATFYTPEGLRHGTRLHTHLIGNIHTHLVHYRVD 499
Query: 56 MDIDGANNSFVEVHLEKQETSPGESPRKSYLK 87
+D+ G NSF + ++ + + SPR ++
Sbjct: 500 LDVAGTKNSFQTLQMKLENITNPWSPRHRVVQ 531
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 76/198 (38%), Gaps = 35/198 (17%)
Query: 3 NYDCIFDWELQTDGLILIKNLYQVSKPGYMS-----------GPLVCENVIGVVHDHFIT 51
N D ++D G I I+ GY+S G V E+ +G VH H
Sbjct: 455 NXDYVWDTVFHPSGAIEIR----FYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAH 510
Query: 52 LHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIE---QCLNLYDPSEFHVINPSRR 108
+D+D+ G N + + SP +++ + L + + + F V + + R
Sbjct: 511 FKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPR 570
Query: 109 -----SRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGG-------LLVYQSREDEA 156
S N GH P G +L P +N A G L V Q +E+E
Sbjct: 571 YLYLASNHSNKWGH---PRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEP 627
Query: 157 LAVWSEMWNFNFPVMPTV 174
+ S ++N N P PTV
Sbjct: 628 SS--SSVFNQNDPWAPTV 643
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 76/198 (38%), Gaps = 35/198 (17%)
Query: 3 NYDCIFDWELQTDGLILIKNLYQVSKPGYMS-----------GPLVCENVIGVVHDHFIT 51
N D ++D G I I+ GY+S G V E+ +G VH H
Sbjct: 442 NXDYVWDTVFHPSGAIEIR----FYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAH 497
Query: 52 LHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIE---QCLNLYDPSEFHVINPSRR 108
+D+D+ G N + + SP +++ + L + + + F V + + R
Sbjct: 498 FKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPR 557
Query: 109 -----SRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGG-------LLVYQSREDEA 156
S N GH P G +L P +N A G L V Q +E+E
Sbjct: 558 YLYLASNHSNKWGH---PRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEP 614
Query: 157 LAVWSEMWNFNFPVMPTV 174
+ S ++N N P PTV
Sbjct: 615 SS--SSVFNQNDPWAPTV 630
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 76/198 (38%), Gaps = 35/198 (17%)
Query: 3 NYDCIFDWELQTDGLILIKNLYQVSKPGYMS-----------GPLVCENVIGVVHDHFIT 51
N D ++D G I I+ GY+S G V E+ +G VH H
Sbjct: 470 NXDYVWDTVFHPSGAIEIR----FYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAH 525
Query: 52 LHLDMDIDGANNSFVEVHLEKQETSPGESPRKSYLKIE---QCLNLYDPSEFHVINPSRR 108
+D+D+ G N + + SP +++ + L + + + F V + + R
Sbjct: 526 FKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPR 585
Query: 109 -----SRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGG-------LLVYQSREDEA 156
S N GH P G +L P +N A G L V Q +E+E
Sbjct: 586 YLYLASNHSNKWGH---PRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEP 642
Query: 157 LAVWSEMWNFNFPVMPTV 174
+ S ++N N P PTV
Sbjct: 643 SS--SSVFNQNDPWAPTV 658
>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase
pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
Oxidase In Complex With Clonidine
Length = 746
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 80/215 (37%), Gaps = 65/215 (30%)
Query: 1 MGNYDCIFDWELQTDGLILIKNLYQVSKPGYMS-----------GPLVCENVIGVVHDHF 49
M N D ++D +G I +K + GY+S G V E+ +G VH H
Sbjct: 451 MLNXDYVWDMVFYPNGAIEVK----LHATGYISSAFLFGAARRYGNQVGEHTLGPVHTHS 506
Query: 50 ITLHLDMDIDGANN-------SFV--------------------EVHLEKQETSP--GES 80
+D+D+ G N +FV ++ E+Q P G S
Sbjct: 507 AHYKVDLDVGGLENWVWAEDMAFVPTAIPWSPEHQIQRLQVTRKQLETEEQAAFPLGGAS 566
Query: 81 PRKSYLKIEQCLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNE 140
PR YL +Q ++ G+P G++ A + +P +R
Sbjct: 567 PRYLYLASKQS-----------------NKWGHPRGYRIQTVSFAGGPMPQN-SPMERAF 608
Query: 141 QWAG-GLLVYQSREDEALAVWSEMWNFNFPVMPTV 174
W L + Q +E E + S ++N N P PTV
Sbjct: 609 SWGRYQLAITQRKETEPSS--SSVFNQNDPWTPTV 641
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 98 SEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNTATPSDRNEQWAGGLLVYQSREDEAL 157
+ F V++ R G+ S H V A +++RN T R+ Q G ++ ++RE AL
Sbjct: 81 ASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVAL 140
Query: 158 AV 159
V
Sbjct: 141 LV 142
>pdb|3N9H|A Chain A, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|B Chain B, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|C Chain C, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|D Chain D, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|E Chain E, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
pdb|3N9H|F Chain F, Crystal Structural Of Mutant Y305a In The Copper Amine
Oxidase From Hansenula Polymorpha
Length = 692
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 167 NFPVMPTVPSSFDLEPVNFFHRNPTLRL 194
+FP+MP P + L P +FF NP L +
Sbjct: 630 DFPLMPAEPITLMLRPRHFFTENPGLDI 657
>pdb|3SX1|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SX1|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Its Apo
Form
pdb|3SXX|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|D Chain D, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|E Chain E, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3SXX|F Chain F, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Co(ii)
pdb|3T0U|A Chain A, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|B Chain B, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
pdb|3T0U|C Chain C, Hansenula Polymorpha Copper Amine Oxidase-1 In Complex
With Cu(i)
Length = 692
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 167 NFPVMPTVPSSFDLEPVNFFHRNPTLRL 194
+FP+MP P + L P +FF NP L +
Sbjct: 630 DFPLMPAEPITLMLRPRHFFTENPGLDI 657
>pdb|2OOV|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OOV|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase To
1.7 Angstroms
pdb|2OQE|C Chain C, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|D Chain D, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|E Chain E, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
pdb|2OQE|F Chain F, Crystal Structure Of Hansenula Polymorpha Amine Oxidase In
Complex With Xe To 1.6 Angstroms
Length = 660
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 167 NFPVMPTVPSSFDLEPVNFFHRNPTLRL 194
+FP+MP P + L P +FF NP L +
Sbjct: 618 DFPLMPAEPITLMLRPRHFFTENPGLDI 645
>pdb|1A2V|A Chain A, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|B Chain B, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|C Chain C, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|D Chain D, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|E Chain E, Copper Amine Oxidase From Hansenula Polymorpha
pdb|1A2V|F Chain F, Copper Amine Oxidase From Hansenula Polymorpha
Length = 655
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 167 NFPVMPTVPSSFDLEPVNFFHRNPTLRL 194
+FP+MP P + L P +FF NP L +
Sbjct: 613 DFPLMPAEPITLMLRPRHFFTENPGLDI 640
>pdb|1EKM|A Chain A, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|B Chain B, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
pdb|1EKM|C Chain C, Crystal Structure At 2.5 A Resolution Of Zinc-Substituted
Copper Amine Oxidase Of Hansenula Polymorpha Expressed
In Escherichia Coli
Length = 656
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 167 NFPVMPTVPSSFDLEPVNFFHRNPTLRL 194
+FP+MP P + L P +FF NP L +
Sbjct: 614 DFPLMPAEPITLMLRPRHFFTENPGLDI 641
>pdb|2VRQ|A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|B Chain B, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|C Chain C, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
Length = 496
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 190 PTLRLPADCFAISFHW 205
P LR P CFA +HW
Sbjct: 66 PVLRWPGGCFADEYHW 81
>pdb|2VRK|A Chain A, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|B Chain B, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|C Chain C, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
Length = 496
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 190 PTLRLPADCFAISFHW 205
P LR P CFA +HW
Sbjct: 66 PVLRWPGGCFADEYHW 81
>pdb|2XGR|A Chain A, Extracellular Endonuclease
Length = 252
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 125 AATLLRNTATPSDRNEQWAGGLLVYQSREDEALAVWSEMWNFNFPVMP------TVPSSF 178
A T NT S N+ G+L Y++R D LA+ + W ++ V P VP
Sbjct: 139 AMTAWLNTGAYSGANDSNPEGMLYYENRLDSWLALHPDFW-LDYKVTPIYSGNEVVPRQI 197
Query: 179 DLEPV 183
+L+ V
Sbjct: 198 ELQYV 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,676,988
Number of Sequences: 62578
Number of extensions: 325868
Number of successful extensions: 966
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 872
Number of HSP's gapped (non-prelim): 57
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)