Query 046620
Match_columns 219
No_of_seqs 113 out of 643
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 1.6E-64 3.5E-69 488.1 20.2 201 1-202 384-639 (647)
2 PF01179 Cu_amine_oxid: Copper 100.0 1.4E-64 3.1E-69 469.7 13.4 199 1-199 158-413 (413)
3 COG3733 TynA Cu2+-containing a 100.0 4.2E-62 9.1E-67 454.6 17.7 197 1-198 401-653 (654)
4 PLN02566 amine oxidase (copper 100.0 2.6E-60 5.6E-65 458.8 19.4 192 1-193 393-646 (646)
5 PRK14696 tynA tyramine oxidase 100.0 8.3E-60 1.8E-64 459.2 19.6 194 1-197 457-719 (721)
6 KOG1186 Copper amine oxidase [ 100.0 1.3E-55 2.9E-60 419.9 16.4 198 1-198 402-656 (670)
7 KOG0047 Catalase [Inorganic io 28.2 4.2 9E-05 38.8 -4.4 34 163-196 299-339 (505)
8 PF06351 Allene_ox_cyc: Allene 20.1 1E+02 0.0022 25.8 2.7 45 3-50 75-125 (176)
9 PF07661 MORN_2: MORN repeat v 18.9 97 0.0021 16.0 1.7 13 9-21 5-17 (22)
10 PLN02343 allene oxide cyclase 16.1 2.2E+02 0.0049 24.7 4.0 49 3-54 126-182 (229)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=1.6e-64 Score=488.06 Aligned_cols=201 Identities=33% Similarity=0.547 Sum_probs=182.4
Q ss_pred CcccceeeeEEEccCCceEEE-------Eeecc-CCCCCCCCCccccCcccccceeEEeeeeecccCCCCCeEEEEEeEE
Q 046620 1 MGNYDCIFDWELQTDGLILIK-------NLYQV-SKPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEK 72 (219)
Q Consensus 1 VgNYDY~f~~~F~~DGtIe~e-------~t~~~-~~~~~~yG~~V~p~v~g~~HqH~f~~RiD~dIdG~~Nsv~~~~~~~ 72 (219)
||||||||+|+|||||+||+| +++++ ++++.+||++|+|+++|++|||+|||||||||||.+|||+++++++
T Consensus 384 VgNYdYi~~w~F~qdG~Ie~eV~aTGil~t~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~ 463 (647)
T PRK11504 384 VGNYDYGFYWYFYQDGTIEFEVKLTGIVFTAAVPPGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVP 463 (647)
T ss_pred cccccEEEEEEEecCceEEEEEEeeeEEEeeeeCCCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEe
Confidence 799999999999999999999 44444 3556789999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcceEEEEe-----------ecCCCCCcEEEEecCCCCCCCCCCeeEEEecCCCcccCCCCC---------
Q 046620 73 QETSPGESPRKSYLKIEQ-----------CLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNT--------- 132 (219)
Q Consensus 73 ~~~~~~~~p~~~~~~~e~-----------~~~~~~~r~~~vvN~~~~N~~G~p~gYkl~p~~~~~~l~~~~--------- 132 (219)
++.+ ++||+++.++.++ +++..++|+|+|+|++++|++|+|+||||+|++++.+|+.++
T Consensus 464 ~p~~-~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~f 542 (647)
T PRK11504 464 VPMG-PDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGF 542 (647)
T ss_pred cCCC-CCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchh
Confidence 9987 5899888876655 566778999999999999999999999999999988888876
Q ss_pred ------CCcCCCCCCCCCCCCCCCCCCCchHhhHhh-----------hhc----------CCCCCcccccceeeEeecCC
Q 046620 133 ------ATPSDRNEQWAGGLLVYQSREDEALAVWSE-----------MWN----------FNFPVMPTVPSSFDLEPVNF 185 (219)
Q Consensus 133 ------VT~y~d~E~~asg~y~~qs~~~~~l~~Wv~-----------vwh----------ED~Pvmp~~~~gf~L~P~nF 185 (219)
||+|+|+|+||||+|++|+.++++|+.|++ ||| |||||||++.+||.|||+||
T Consensus 543 a~~~lwVT~y~d~E~~aag~y~~Qs~~~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nF 622 (647)
T PRK11504 543 ATHHLWVTPYDPDERYAAGDYPNQSAGGDGLPAYIAADRSIENTDVVLWYTFGITHVPRPEDWPVMPVDYAGFKLKPVGF 622 (647)
T ss_pred hhCcEEEeccCCCccccCCCCcccCCCCCCHHHHhcCCCccccCceEEEEecCcccCCChhhCCCCccceEEEEEEcCCC
Confidence 999999999999999999998888888886 564 99999999999999999999
Q ss_pred CCCCCccCCCCCccccc
Q 046620 186 FHRNPTLRLPADCFAIS 202 (219)
Q Consensus 186 Fd~nPs~d~p~~~~~~~ 202 (219)
|++||+||||++.++.+
T Consensus 623 F~~NPaldvp~s~~~~~ 639 (647)
T PRK11504 623 FDRNPALDLPPEPPAAC 639 (647)
T ss_pred CCCCccccCCCcccccc
Confidence 99999999999966433
No 2
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=1.4e-64 Score=469.67 Aligned_cols=199 Identities=35% Similarity=0.580 Sum_probs=168.1
Q ss_pred CcccceeeeEEEccCCceEEE--EeeccC------CCCCCCCCccccCcccccceeEEeeeeecccCCCCCeEEEEEeEE
Q 046620 1 MGNYDCIFDWELQTDGLILIK--NLYQVS------KPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLEK 72 (219)
Q Consensus 1 VgNYDY~f~~~F~~DGtIe~e--~t~~~~------~~~~~yG~~V~p~v~g~~HqH~f~~RiD~dIdG~~Nsv~~~~~~~ 72 (219)
||||||||+|+|||||+||++ .|++++ +++.+||++|+|+++|++|||+|||||||||||++|||+++++++
T Consensus 158 V~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~~~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~ 237 (413)
T PF01179_consen 158 VGNYDYIFDWIFYQDGSIEVEVRATGILSTSPYAPGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDGTNNSVVEVDIVP 237 (413)
T ss_dssp ETTEEEEEEEEEETTS-EEEEEEEEE---EEETTTTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTSSEEEEEEEEEEE
T ss_pred ccccceEEEEEEecCceEEEEEEeeeEEEEEecCCCCccCCcceEcCCccccceeEEEEEEEccccCCCCCeEEEEEeEE
Confidence 799999999999999999999 444442 446799999999999999999999999999999999999999999
Q ss_pred ecC--CCCCCCCcceEEEEe-----------ecCCCCCcEEEEecCCCCCCCCCCeeEEEecCCCcccCCCCC-------
Q 046620 73 QET--SPGESPRKSYLKIEQ-----------CLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNT------- 132 (219)
Q Consensus 73 ~~~--~~~~~p~~~~~~~e~-----------~~~~~~~r~~~vvN~~~~N~~G~p~gYkl~p~~~~~~l~~~~------- 132 (219)
++. +...||+++.+..|+ +++..++|+|+|+|++++|++|+|+||||+|++++.+|+.++
T Consensus 238 ~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~~~~s~~~~ra 317 (413)
T PF01179_consen 238 EPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLAPPDSWVARRA 317 (413)
T ss_dssp EEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SSSTTSCHHHHT
T ss_pred cccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccCCCcchhhhcc
Confidence 986 334567777766555 566778999999999999999999999999999988888877
Q ss_pred --------CCcCCCCCCCCCCCCCCCCCCCchHhhHhh-----------hh------c----CCCCCcccccceeeEeec
Q 046620 133 --------ATPSDRNEQWAGGLLVYQSREDEALAVWSE-----------MW------N----FNFPVMPTVPSSFDLEPV 183 (219)
Q Consensus 133 --------VT~y~d~E~~asg~y~~qs~~~~~l~~Wv~-----------vw------h----ED~Pvmp~~~~gf~L~P~ 183 (219)
||+|+|+|+||||+|++|+.++++|..|++ +| | |||||||++++||+|+|+
T Consensus 318 ~fa~~~lwVT~y~d~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~~~~gf~L~P~ 397 (413)
T PF01179_consen 318 SFARHHLWVTKYKDSERYASGEYNNQSPGDVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMPVEWLGFMLKPF 397 (413)
T ss_dssp GGGGSSEEEEE--TTGS-ST-TTTTT-SSSSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEEEEEEEEEEEEE
T ss_pred ccccCceEEeecCCCccCCCCCCccCCCCCCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCCCcEEEEEEEcC
Confidence 999999999999999999887788888884 55 4 999999999999999999
Q ss_pred CCCCCCCccCCCCCcc
Q 046620 184 NFFHRNPTLRLPADCF 199 (219)
Q Consensus 184 nFFd~nPs~d~p~~~~ 199 (219)
|||++||+||+|++.|
T Consensus 398 nFF~~nPald~p~~~~ 413 (413)
T PF01179_consen 398 NFFDRNPALDVPPSVQ 413 (413)
T ss_dssp SSSSSSTTTTCTTC--
T ss_pred CCCCCCccccCCCCCC
Confidence 9999999999999853
No 3
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.2e-62 Score=454.58 Aligned_cols=197 Identities=31% Similarity=0.552 Sum_probs=179.9
Q ss_pred CcccceeeeEEEccCCceEEE-------EeeccC-CCC-CCCCCccccCcccccceeEEeeeeecccCCCCCeEEEEEeE
Q 046620 1 MGNYDCIFDWELQTDGLILIK-------NLYQVS-KPG-YMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLE 71 (219)
Q Consensus 1 VgNYDY~f~~~F~~DGtIe~e-------~t~~~~-~~~-~~yG~~V~p~v~g~~HqH~f~~RiD~dIdG~~Nsv~~~~~~ 71 (219)
||||||+|+|+|||||+||+| ++..++ ++. ..||++|.|++.|+.||||||+||||||||.+|||+++++.
T Consensus 401 v~NYdYg~~WifhqDGtIe~e~klTGIin~~a~~e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLdm~VDG~~Nsv~e~nv~ 480 (654)
T COG3733 401 VANYDYGFYWIFHQDGTIEFEAKLTGIINTKAIAEGQPDPTYGTLVDPNVVGHTHQHFFNARLDMDVDGERNSVVEMNVV 480 (654)
T ss_pred ecccceeEEEEEEcCceEEEeecceeEEEeehhcCCCCCCCccceeccccccccceeEEEeeecccccCcccceEEEEcc
Confidence 699999999999999999999 344333 332 34999999999999999999999999999999999999988
Q ss_pred EecCCCCCCCCcceEEEEe-----------ecCCCCCcEEEEecCCCCCCCCCCeeEEEecCCCcccCCCCC--------
Q 046620 72 KQETSPGESPRKSYLKIEQ-----------CLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNT-------- 132 (219)
Q Consensus 72 ~~~~~~~~~p~~~~~~~e~-----------~~~~~~~r~~~vvN~~~~N~~G~p~gYkl~p~~~~~~l~~~~-------- 132 (219)
..|.+. .||+++.|.+|+ ++|..+.|+|+|+|++|+|.+|+|++|||+|+.+..+++.++
T Consensus 481 ~~P~~~-~np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~~~~~~~~~~gs~v~~R~~ 559 (654)
T COG3733 481 GAPITK-GNPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPGHNPTPPVAEGSQVRHRAG 559 (654)
T ss_pred cCCCCC-CCCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecCCCCCCcCCCCcchhhhhh
Confidence 888764 789999988877 688889999999999999999999999999998877777666
Q ss_pred -------CCcCCCCCCCCCCCCCCCCCCCchHhhHhh-----------hhc----------CCCCCcccccceeeEeecC
Q 046620 133 -------ATPSDRNEQWAGGLLVYQSREDEALAVWSE-----------MWN----------FNFPVMPTVPSSFDLEPVN 184 (219)
Q Consensus 133 -------VT~y~d~E~~asg~y~~qs~~~~~l~~Wv~-----------vwh----------ED~Pvmp~~~~gf~L~P~n 184 (219)
||+|++.|+||+|+|++|+.+++||+.|++ ||| |||||||+++.||.|+|+|
T Consensus 560 Fa~~hlwVT~y~p~ErYp~GdYpnq~~~~~GLp~yi~~d~sl~neDlVvW~T~GitHv~rpED~PvMP~e~~gf~L~P~g 639 (654)
T COG3733 560 FATKHLWVTPYHPGERYPAGDYPNQSAGGKGLPEYIKDDRSLDNEDLVVWHTFGITHVPRPEDWPVMPVEWAGFLLKPRG 639 (654)
T ss_pred hccceEEEeccCcccccCCCCCCCCCCCCCChhhhhhccccccCcceEEEEecCceeccCcccCCccccchhceEecccc
Confidence 999999999999999999999999999998 786 9999999999999999999
Q ss_pred CCCCCCccCCCCCc
Q 046620 185 FFHRNPTLRLPADC 198 (219)
Q Consensus 185 FFd~nPs~d~p~~~ 198 (219)
||++||++++|.+.
T Consensus 640 FFd~nPai~lp~~~ 653 (654)
T COG3733 640 FFDRNPAIDLPRKD 653 (654)
T ss_pred ccccCcccCCCccC
Confidence 99999999999874
No 4
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=2.6e-60 Score=458.79 Aligned_cols=192 Identities=42% Similarity=0.803 Sum_probs=169.6
Q ss_pred CcccceeeeEEEccCCceEEE--EeeccC--------CCC---CCCCCccccCcccccceeEEeeeeecccCCCCCeEEE
Q 046620 1 MGNYDCIFDWELQTDGLILIK--NLYQVS--------KPG---YMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVE 67 (219)
Q Consensus 1 VgNYDY~f~~~F~~DGtIe~e--~t~~~~--------~~~---~~yG~~V~p~v~g~~HqH~f~~RiD~dIdG~~Nsv~~ 67 (219)
||||||||+|+|||||+||+| .|+.++ +++ .+||++|+|+++|++|||+|||||||||||.+|||++
T Consensus 393 VgNYDYif~w~F~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~ 472 (646)
T PLN02566 393 LGNYDYILDWEFKKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTIAVNHDHFLTYYLDLDVDGNGNSFVK 472 (646)
T ss_pred eecccEEEEEEEecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCCCeEEE
Confidence 799999999999999999999 555442 221 5899999999999999999999999999999999999
Q ss_pred EEeEEecCCC--CCCCCcceEEEEe-----------ecCCCCCcEEEEecCCCCCCCCCCeeEEEecCCCcccCCCCC--
Q 046620 68 VHLEKQETSP--GESPRKSYLKIEQ-----------CLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNT-- 132 (219)
Q Consensus 68 ~~~~~~~~~~--~~~p~~~~~~~e~-----------~~~~~~~r~~~vvN~~~~N~~G~p~gYkl~p~~~~~~l~~~~-- 132 (219)
+++++++... ++||+++.++.++ +++.. .|.|+|+|++++|++|+|+||||+|++++.+|+.++
T Consensus 473 ~~~~~~~~~~~~~~np~g~~~~~~~~~~~tE~~a~~~~~~~-~~~~~i~N~~~~N~~G~pvgYkL~p~~~~~~l~~~~s~ 551 (646)
T PLN02566 473 AKLQTARVTAVNASSPRKSYWTVVKETAKTEAEGRIRLGSE-PAELLIVNPNKKTKLGNQVGYRLITGQPVTSLLSDDDY 551 (646)
T ss_pred EeeEEccCCCCCCCCCCcceEEEEEEEecchhhhhhccCCC-CceEEEECCCCcCCCCCeeeEEEccCCCccccCCCccc
Confidence 9999987654 6899988876554 34544 477999999999999999999999999888777765
Q ss_pred -------------CCcCCCCCCCCCCCCCCCCCCCchHhhHhh-----------hhc----------CCCCCccccccee
Q 046620 133 -------------ATPSDRNEQWAGGLLVYQSREDEALAVWSE-----------MWN----------FNFPVMPTVPSSF 178 (219)
Q Consensus 133 -------------VT~y~d~E~~asg~y~~qs~~~~~l~~Wv~-----------vwh----------ED~Pvmp~~~~gf 178 (219)
||+|+|+|+||||+|++|+.++++|..|+. +|| |||||||++.+||
T Consensus 552 ~~~Ra~fa~~~lwVT~y~d~E~~aag~y~~qs~g~~gl~~w~~~~~~I~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf 631 (646)
T PLN02566 552 PQIRAAYTKYQVWVTAYNKSERWAGGFYADRSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPVMPTLHGGF 631 (646)
T ss_pred hhhcchhhhCcEEEecCCCcccCCCCcCccCCCCCCChhhhhcCCCcccCCceEEEEecccccCCChhhCCCcccccceE
Confidence 999999999999999999988888888885 563 9999999999999
Q ss_pred eEeecCCCCCCCccC
Q 046620 179 DLEPVNFFHRNPTLR 193 (219)
Q Consensus 179 ~L~P~nFFd~nPs~d 193 (219)
.|||+|||++||+|.
T Consensus 632 ~L~P~nFF~~NPaL~ 646 (646)
T PLN02566 632 ELRPANFFESNPLLR 646 (646)
T ss_pred EEEcCCCCCCCCCCC
Confidence 999999999999983
No 5
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=8.3e-60 Score=459.19 Aligned_cols=194 Identities=30% Similarity=0.516 Sum_probs=170.1
Q ss_pred CcccceeeeEEEccCCceEEE--Eeecc-----C---------CCCCCCCCccccCcccccceeEEeeeeecccCCCCCe
Q 046620 1 MGNYDCIFDWELQTDGLILIK--NLYQV-----S---------KPGYMSGPLVCENVIGVVHDHFITLHLDMDIDGANNS 64 (219)
Q Consensus 1 VgNYDY~f~~~F~~DGtIe~e--~t~~~-----~---------~~~~~yG~~V~p~v~g~~HqH~f~~RiD~dIdG~~Ns 64 (219)
||||||||+|+|||||+||+| .|+.+ + +++.+||++|+|+++|++|||+|||||||||||.+||
T Consensus 457 VgNYDYif~w~F~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Ns 536 (721)
T PRK14696 457 VGNYDYIFDWVFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNS 536 (721)
T ss_pred ecceeEEEEEEEecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCcce
Confidence 799999999999999999999 44442 1 2346899999999999999999999999999999999
Q ss_pred EEEEEeEEecCCCCCCCCcceEEEEe-----------ecCCCCCcEEEEecCCCCCCCCCCeeEEEecCC--Cc----cc
Q 046620 65 FVEVHLEKQETSPGESPRKSYLKIEQ-----------CLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGG--NA----AT 127 (219)
Q Consensus 65 v~~~~~~~~~~~~~~~p~~~~~~~e~-----------~~~~~~~r~~~vvN~~~~N~~G~p~gYkl~p~~--~~----~~ 127 (219)
|+++|++++|.+. +||+++.++.++ +++..+.|. |+|++++|++|+|+||||+|++ +. .+
T Consensus 537 v~~~d~~~~p~~~-~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~pvgYkL~p~~~~~~~~~~~~ 613 (721)
T PRK14696 537 LVAMDPVVKPNTA-GGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGA 613 (721)
T ss_pred EEEEeeeEccCCC-CCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCCeeeEEEecCCCCcccccccc
Confidence 9999999999874 899988877665 455556775 8999999999999999999974 31 11
Q ss_pred CCCCC---------------CCcCCCCCCCCCCCCCCCCCCCchHhhHhh-----------hhc----------CCCCCc
Q 046620 128 LLRNT---------------ATPSDRNEQWAGGLLVYQSREDEALAVWSE-----------MWN----------FNFPVM 171 (219)
Q Consensus 128 l~~~~---------------VT~y~d~E~~asg~y~~qs~~~~~l~~Wv~-----------vwh----------ED~Pvm 171 (219)
++.++ ||+|+|+|+||+|+|++|+.+++||..|+. ||| ||||||
T Consensus 614 ~~~p~s~~~~Ra~fa~~~lwVT~y~d~E~~aaG~y~~qs~g~~gl~~w~~~~e~i~n~DiV~W~t~G~~HvPr~ED~PvM 693 (721)
T PRK14696 614 NFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIM 693 (721)
T ss_pred ccCCcchhhhhhhhhhCcEEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCcccCCceEEEEecCcccCCchhhCCCc
Confidence 34444 999999999999999999998889999985 664 999999
Q ss_pred ccccceeeEeecCCCCCCCccCCCCC
Q 046620 172 PTVPSSFDLEPVNFFHRNPTLRLPAD 197 (219)
Q Consensus 172 p~~~~gf~L~P~nFFd~nPs~d~p~~ 197 (219)
|++.+||.|||+|||++||+||||+.
T Consensus 694 P~~~~~f~LkP~nFFd~nPaldvp~~ 719 (721)
T PRK14696 694 PTEWVHTLLKPWNFFDETPTLGLLKK 719 (721)
T ss_pred cceeeeEEEEcCCCCCCCcccCCCCC
Confidence 99999999999999999999999987
No 6
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-55 Score=419.93 Aligned_cols=198 Identities=41% Similarity=0.739 Sum_probs=170.3
Q ss_pred CcccceeeeEEEccCCceEEE--Eeecc-----CC-CC-CCCCCccccCcccccceeEEeeeeecccCCCCCeEEEEEeE
Q 046620 1 MGNYDCIFDWELQTDGLILIK--NLYQV-----SK-PG-YMSGPLVCENVIGVVHDHFITLHLDMDIDGANNSFVEVHLE 71 (219)
Q Consensus 1 VgNYDY~f~~~F~~DGtIe~e--~t~~~-----~~-~~-~~yG~~V~p~v~g~~HqH~f~~RiD~dIdG~~Nsv~~~~~~ 71 (219)
||||||||||+||+||.||++ .|+++ .. ++ ..|||+|+++++|.+|||+|+|||||||||.+|++...+.+
T Consensus 402 v~NYdYi~d~~F~~~G~ie~~v~lTG~l~~~~~~~~~~~~~~Gt~v~~~~ig~~H~H~~~~rldldvdG~~n~~~v~~~~ 481 (670)
T KOG1186|consen 402 VGNYDYIVDYEFKPSGVIEAGVGLTGVLEVKPVEYGETSDIYGTIVAENTIGVNHDHFVTFRLDLDVDGTKNNSFVRDEL 481 (670)
T ss_pred ecccceEEEEEEecCCeEEEEEeeEEEEEeeccccccccccccceecccccccccceEEEEEEcccccCCccceeeeeeE
Confidence 799999999999999999999 44443 32 22 58999999999999999999999999999995554444444
Q ss_pred EecCCCCC-CCCcceEEEEe-----------ecCCCCCcEEEEecCCCCCCCCCCeeEEEecCCCcccCCCCC-------
Q 046620 72 KQETSPGE-SPRKSYLKIEQ-----------CLNLYDPSEFHVINPSRRSRLGNPSGHKAVPGGNAATLLRNT------- 132 (219)
Q Consensus 72 ~~~~~~~~-~p~~~~~~~e~-----------~~~~~~~r~~~vvN~~~~N~~G~p~gYkl~p~~~~~~l~~~~------- 132 (219)
..+..+++ +++++++++++ +++..+++.|.|+|++++|++|+|+||||+|++++.+|+.+|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~ 561 (670)
T KOG1186|consen 482 VTPRTPPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRA 561 (670)
T ss_pred eecccCCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEECCCCccccCCccceEEeeCCcccccCCCCchHHhhh
Confidence 44444444 45667776665 566678999999999999999999999999999999888887
Q ss_pred --------CCcCCCCCCCCCCCCCCCCCCCchHhhHhh-----------hhc----------CCCCCcccccceeeEeec
Q 046620 133 --------ATPSDRNEQWAGGLLVYQSREDEALAVWSE-----------MWN----------FNFPVMPTVPSSFDLEPV 183 (219)
Q Consensus 133 --------VT~y~d~E~~asg~y~~qs~~~~~l~~Wv~-----------vwh----------ED~Pvmp~~~~gf~L~P~ 183 (219)
||+|+++|.||||.|.+|+.++++|+.|.. ||| ||||+|||+..||.|||.
T Consensus 562 af~~y~l~VT~y~~~E~~~~g~y~~~~~~~~tl~~w~~~nr~ien~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF~LrP~ 641 (670)
T KOG1186|consen 562 AFTNYNLWVTPYNESEVWASGLYADQSQGDDTLAVWSQRNRSIENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGFELRPT 641 (670)
T ss_pred hhhcceeEEeccCccccCcccccccCCCCCCcceehhhcccccccCceEEEEEcceeecCchhcCCCCcccCCceeeccc
Confidence 999999999999999999888777777776 664 999999999999999999
Q ss_pred CCCCCCCccCCCCCc
Q 046620 184 NFFHRNPTLRLPADC 198 (219)
Q Consensus 184 nFFd~nPs~d~p~~~ 198 (219)
|||++||+|++|++.
T Consensus 642 NFF~~nP~l~~~p~~ 656 (670)
T KOG1186|consen 642 NFFERNPSLKSPPSK 656 (670)
T ss_pred cccccCccccCCCcc
Confidence 999999999999995
No 7
>KOG0047 consensus Catalase [Inorganic ion transport and metabolism]
Probab=28.19 E-value=4.2 Score=38.84 Aligned_cols=34 Identities=24% Similarity=0.676 Sum_probs=27.3
Q ss_pred hh-cCCCCCcccccceeeEeecCCCCCC------CccCCCC
Q 046620 163 MW-NFNFPVMPTVPSSFDLEPVNFFHRN------PTLRLPA 196 (219)
Q Consensus 163 vw-hED~Pvmp~~~~gf~L~P~nFFd~n------Ps~d~p~ 196 (219)
|| |.|+|..|+-+.-+-=-|.|||.++ |+.-+|-
T Consensus 299 vWP~~~~PL~~VGk~vLn~Np~NyFaevEQ~AF~Pa~~VPG 339 (505)
T KOG0047|consen 299 VWPHKDYPLIPVGKMVLNRNPDNYFAEVEQAAFSPAHIVPG 339 (505)
T ss_pred cccCcCccccccceEEecCCchHHHHHHHHhccCccccCCC
Confidence 78 4999999998888888899999875 6655553
No 8
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=20.09 E-value=1e+02 Score=25.79 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=29.5
Q ss_pred ccceeeeEEEccCCceEEEEe------eccCCCCCCCCCccccCcccccceeEE
Q 046620 3 NYDCIFDWELQTDGLILIKNL------YQVSKPGYMSGPLVCENVIGVVHDHFI 50 (219)
Q Consensus 3 NYDY~f~~~F~~DGtIe~e~t------~~~~~~~~~yG~~V~p~v~g~~HqH~f 50 (219)
-||-++.|+|-..|.|.+... ++++ --=|+-|-.++.|+++-|-+
T Consensus 75 ryEaiySfyfGdyGhISvqGpy~t~eDtyLA---VTGGtGiF~g~~GqVkL~qi 125 (176)
T PF06351_consen 75 RYEAIYSFYFGDYGHISVQGPYLTYEDTYLA---VTGGTGIFEGVYGQVKLHQI 125 (176)
T ss_dssp EEEEEEEEE-GGGEEEEEEEEEETTS-EEEE---EEEEEETTTT-EEEEEEEEE
T ss_pred eEEEEEEEEecccceEEEecccccccceeEE---EeccCceeecceEEEEEEEe
Confidence 388999999999999999911 1111 01266777788888776655
No 9
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=18.89 E-value=97 Score=15.96 Aligned_cols=13 Identities=8% Similarity=-0.191 Sum_probs=10.4
Q ss_pred eEEEccCCceEEE
Q 046620 9 DWELQTDGLILIK 21 (219)
Q Consensus 9 ~~~F~~DGtIe~e 21 (219)
.-.|+.+|.|+.+
T Consensus 5 ~~~yy~nG~l~~~ 17 (22)
T PF07661_consen 5 WKFYYENGKLKSE 17 (22)
T ss_pred EEEEeCCCCEEEE
Confidence 3578999999876
No 10
>PLN02343 allene oxide cyclase
Probab=16.08 E-value=2.2e+02 Score=24.72 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=31.9
Q ss_pred ccceeeeEEEccCCceEEEE---e---eccCCCCCCCCCccccCccccccee--EEeeee
Q 046620 3 NYDCIFDWELQTDGLILIKN---L---YQVSKPGYMSGPLVCENVIGVVHDH--FITLHL 54 (219)
Q Consensus 3 NYDY~f~~~F~~DGtIe~e~---t---~~~~~~~~~yG~~V~p~v~g~~HqH--~f~~Ri 54 (219)
-||=++.|+|-..|-|.+.. | .+++ --=|+-|-.++.|+++-| +|-|||
T Consensus 126 ryEa~ySfyfGDyGHisvqGpyltyeDt~La---iTGGsGiFega~GqvkL~qivfPfKl 182 (229)
T PLN02343 126 RYEAIYSFYFGDYGHISVQGPYLTYEDTYLA---ITGGSGIFEGAYGQVKLHQIVFPFKL 182 (229)
T ss_pred eeEEEEEEEecCcceeEEeccccccccceEE---eecCcceeecceeEEEEeeeeeeeee
Confidence 38899999999999999991 1 1221 011556667777776555 444553
Done!