Your job contains 1 sequence.
>046621
MSNEAFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVS
FLYLANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFG
SRGQGLKDEMLGKNPPPVPASNGRSSNPIKIVKRDANSVRIKLAVGALPEKILTAFQSVL
DEHPNEEVALNNCNAAVHHAGKVSEDVENTPSQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046621
(213 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2171795 - symbol:AT5G65180 "AT5G65180" species... 561 2.6e-54 1
TAIR|locus:2184113 - symbol:AT5G10060 "AT5G10060" species... 545 1.3e-52 1
TAIR|locus:2091990 - symbol:AT3G26990 "AT3G26990" species... 506 1.8e-48 1
MGI|MGI:1917720 - symbol:Rprd1b "regulation of nuclear pr... 316 2.4e-28 1
RGD|1304782 - symbol:Rprd1b "regulation of nuclear pre-mR... 316 2.4e-28 1
UNIPROTKB|A6QLW3 - symbol:RPRD1B "RPRD1B protein" species... 312 6.4e-28 1
UNIPROTKB|E2RRZ8 - symbol:RPRD1B "Uncharacterized protein... 312 6.4e-28 1
UNIPROTKB|Q9NQG5 - symbol:RPRD1B "Regulation of nuclear p... 312 6.4e-28 1
UNIPROTKB|F2Z5H3 - symbol:RPRD1B "Uncharacterized protein... 312 6.4e-28 1
UNIPROTKB|Q5F4B4 - symbol:CREPT "Cell-cycle related and e... 308 1.7e-27 1
UNIPROTKB|Q0P5J9 - symbol:RPRD1A "Regulation of nuclear p... 296 3.2e-26 1
UNIPROTKB|Q96P16 - symbol:RPRD1A "Regulation of nuclear p... 296 3.2e-26 1
UNIPROTKB|I3LT67 - symbol:RPRD1A "Uncharacterized protein... 296 3.2e-26 1
UNIPROTKB|Q5R8Y3 - symbol:RPRD1A "Regulation of nuclear p... 296 3.2e-26 1
MGI|MGI:2385066 - symbol:Rprd1a "regulation of nuclear pr... 291 1.1e-25 1
RGD|1307374 - symbol:Rprd1a "regulation of nuclear pre-mR... 291 1.1e-25 1
UNIPROTKB|Q5ZM30 - symbol:RPRD1A "Regulation of nuclear p... 286 3.6e-25 1
UNIPROTKB|F1NQ92 - symbol:RPRD1A "Regulation of nuclear p... 282 9.7e-25 1
FB|FBgn0035318 - symbol:CG9018 species:7227 "Drosophila m... 241 3.1e-20 1
CGD|CAL0000943 - symbol:orf19.7662 species:5476 "Candida ... 213 1.1e-19 2
ZFIN|ZDB-GENE-030131-6641 - symbol:rprd2a "regulation of ... 212 6.3e-16 1
WB|WBGene00015347 - symbol:cids-1 species:6239 "Caenorhab... 191 7.1e-15 1
UNIPROTKB|P34281 - symbol:cids-1 "CID domain-containing p... 191 7.1e-15 1
UNIPROTKB|H9L0N7 - symbol:RPRD2 "Uncharacterized protein"... 193 9.3e-14 1
UNIPROTKB|Q5VT52 - symbol:RPRD2 "Regulation of nuclear pr... 189 2.5e-13 1
ASPGD|ASPL0000042222 - symbol:AN2049 species:162425 "Emer... 175 1.1e-12 1
MGI|MGI:1922387 - symbol:Rprd2 "regulation of nuclear pre... 182 1.4e-12 1
UNIPROTKB|I3LG94 - symbol:RPRD2 "Uncharacterized protein"... 181 1.8e-12 1
UNIPROTKB|G3MX56 - symbol:RPRD2 "Uncharacterized protein"... 181 1.8e-12 1
POMBASE|SPBC337.03 - symbol:rhn1 "RNA polymerase II trans... 156 1.1e-10 1
SGD|S000002697 - symbol:RTT103 "Protein involved in trans... 143 6.3e-08 1
TAIR|locus:2128091 - symbol:AT4G31200 species:3702 "Arabi... 123 4.5e-05 1
WB|WBGene00020092 - symbol:pcf-11 species:6239 "Caenorhab... 114 0.00071 1
>TAIR|locus:2171795 [details] [associations]
symbol:AT5G65180 "AT5G65180" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007059 "chromosome segregation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0031048 "chromatin silencing by small
RNA" evidence=RCA] [GO:0032204 "regulation of telomere maintenance"
evidence=RCA] [GO:0032504 "multicellular organism reproduction"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0045132 "meiotic
chromosome segregation" evidence=RCA] EMBL:CP002688 EMBL:AB013395
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 KO:K15559 UniGene:At.49809 HOGENOM:HOG000029886
ProtClustDB:CLSN2690086 EMBL:AY034943 EMBL:AY063122 IPI:IPI00544106
RefSeq:NP_569007.1 UniGene:At.9292 ProteinModelPortal:Q9FJP7
SMR:Q9FJP7 PRIDE:Q9FJP7 EnsemblPlants:AT5G65180.1 GeneID:836642
KEGG:ath:AT5G65180 TAIR:At5g65180 InParanoid:Q9FJP7 OMA:NEETEMN
PhylomeDB:Q9FJP7 ArrayExpress:Q9FJP7 Genevestigator:Q9FJP7
Uniprot:Q9FJP7
Length = 439
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 110/208 (52%), Positives = 148/208 (71%)
Query: 6 FDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLA 65
F +IL + L+KLN++QQSI++LS+WCI HR +A+ +V TW+K F+S+Q Q+V LYLA
Sbjct: 5 FSEEILIDNLAKLNSTQQSIQTLSQWCIVHRSEAELVVTTWEKQFHSTQIGQKVPLLYLA 64
Query: 66 NDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRGQG 125
NDILQNS+R+G+EFV EFWKVLP ALK + GD+YGK V+RLV+IWEER+VFGSR +
Sbjct: 65 NDILQNSKRQGNEFVQEFWKVLPGALKDIVSLGDDYGKGVVSRLVNIWEERRVFGSRSKS 124
Query: 126 LKDEMLGKN-PPPVPASNGRSSNPIKIVKRDANSVRIKLAVGALPEKILTAFQSVLDEHP 184
LKD ML + PPP+ S R K KRD+ S + KL+ G + EKI++AF V E+
Sbjct: 125 LKDVMLSEEAPPPLDVSKKRFRGS-KSAKRDSKSTKTKLSSGGVSEKIVSAFNLVRAENS 183
Query: 185 NEEVALNNCNAAVHHAGKVSEDVENTPS 212
NEE +N C +AV K+ +DVE+ S
Sbjct: 184 NEETEMNKCKSAVRRIRKMEKDVEDACS 211
>TAIR|locus:2184113 [details] [associations]
symbol:AT5G10060 "AT5G10060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
"extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002688 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
KO:K15559 HOGENOM:HOG000029886 EMBL:BT002418 EMBL:BT020375
IPI:IPI00535494 RefSeq:NP_196568.2 UniGene:At.28106
ProteinModelPortal:Q8GUK8 SMR:Q8GUK8 IntAct:Q8GUK8 PRIDE:Q8GUK8
EnsemblPlants:AT5G10060.1 GeneID:830870 KEGG:ath:AT5G10060
TAIR:At5g10060 InParanoid:Q8GUK8 OMA:TITETND PhylomeDB:Q8GUK8
ProtClustDB:CLSN2690086 Genevestigator:Q8GUK8 Uniprot:Q8GUK8
Length = 469
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 111/212 (52%), Positives = 147/212 (69%)
Query: 3 NEAFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFL 62
+ F QIL +KL+KLN+SQQSIE+LS WCI +R KA+ IV TW+K F+S++ +Q+V L
Sbjct: 2 SSVFSDQILIDKLAKLNSSQQSIETLSHWCIFNRSKAELIVTTWEKQFHSTEMDQKVPLL 61
Query: 63 YLANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSR 122
YLANDILQNS+R+G+EFV EFW VLP ALK + GD+ GK AV R++ IWEER+VFGSR
Sbjct: 62 YLANDILQNSKRQGNEFVQEFWNVLPKALKDIVSQGDDNGKSAVARVIKIWEERRVFGSR 121
Query: 123 GQGLKDEMLGKNPP-PVPASNGRSSNPIKIVKRDANSVRIKLAV-GALPEKILTAFQSVL 180
+ LKD MLG++ P P+ S R K KR++ S R KLA G + EKI +A+ V+
Sbjct: 122 SKSLKDVMLGEDVPLPLDISKKRPRGS-KSSKRESKSSRTKLASSGGVAEKIASAYHLVV 180
Query: 181 DEHPNEEVALNNCNAAVHHAGKVSEDVENTPS 212
E+ NEE +N C +AV K+ +DVE S
Sbjct: 181 AENSNEEAEMNKCKSAVKRIRKMEKDVEEACS 212
>TAIR|locus:2091990 [details] [associations]
symbol:AT3G26990 "AT3G26990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 KO:K15559 EMBL:BT015401
IPI:IPI00544659 RefSeq:NP_189335.2 UniGene:At.43702
ProteinModelPortal:Q66GK1 SMR:Q66GK1 IntAct:Q66GK1 PaxDb:Q66GK1
PRIDE:Q66GK1 EnsemblPlants:AT3G26990.1 GeneID:822316
KEGG:ath:AT3G26990 TAIR:At3g26990 HOGENOM:HOG000029886
InParanoid:Q66GK1 OMA:RDMIENG PhylomeDB:Q66GK1
ProtClustDB:CLSN2680177 Genevestigator:Q66GK1 Uniprot:Q66GK1
Length = 513
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 105/207 (50%), Positives = 145/207 (70%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F+ QIL EKL+KLNNSQ SIE+LS WCI H KAK +VETW + F+ + +EQR+++LYL
Sbjct: 4 SFNAQILVEKLAKLNNSQASIETLSHWCIFHMNKAKHVVETWGRQFHCAPREQRLAYLYL 63
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRGQ 124
ANDILQNSRRKGSEFV EFWKVLP AL+ + +NGD++G+K+ RLV+IWEERKVFGSRGQ
Sbjct: 64 ANDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDDFGRKSARRLVNIWEERKVFGSRGQ 123
Query: 125 GLKDEMLGKNPPPVPASNG-RSSN--PIKIVKRDANSVRIKLAVGALPEKILTAFQSVLD 181
LK+E+LG+ P NG R+ N P+K+ SV + G+ EK+++A + +
Sbjct: 124 ILKEELLGRQP-----ENGTRNGNLVPLKL------SVPQRQVNGSTLEKVVSAVEVLHG 172
Query: 182 EHPNEEVALNNCNAAVHHAGKVSEDVE 208
+E+ + A + K +++VE
Sbjct: 173 VQIDEDALVGKSTNAAGYLEKATQEVE 199
>MGI|MGI:1917720 [details] [associations]
symbol:Rprd1b "regulation of nuclear pre-mRNA domain
containing 1B" species:10090 "Mus musculus" [GO:0000993 "RNA
polymerase II core binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=ISO] [GO:0010564 "regulation of cell
cycle process" evidence=ISO] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=ISO] MGI:MGI:1917720 GO:GO:0008284
GO:GO:0045944 GO:GO:0006351 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 GO:GO:0000993 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 HOVERGEN:HBG051177 CTD:58490
ChiTaRS:RPRD1B EMBL:DQ372939 EMBL:AK011979 EMBL:AK139995
EMBL:AK147718 EMBL:AK147930 EMBL:AK152125 EMBL:AK152220
EMBL:AL669824 EMBL:BC028819 EMBL:BC042447 EMBL:BC054350
IPI:IPI00338515 IPI:IPI00653738 IPI:IPI00752391 RefSeq:NP_081710.1
UniGene:Mm.290810 ProteinModelPortal:Q9CSU0 SMR:Q9CSU0
PhosphoSite:Q9CSU0 PaxDb:Q9CSU0 PRIDE:Q9CSU0
Ensembl:ENSMUST00000029180 Ensembl:ENSMUST00000103123
Ensembl:ENSMUST00000109518 Ensembl:ENSMUST00000152452 GeneID:70470
KEGG:mmu:70470 UCSC:uc008npl.1 UCSC:uc008npm.1 UCSC:uc008npn.1
InParanoid:Q9CSU0 NextBio:331695 Bgee:Q9CSU0 Genevestigator:Q9CSU0
GermOnline:ENSMUSG00000027651 Uniprot:Q9CSU0
Length = 326
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 66/143 (46%), Positives = 90/143 (62%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F L +KLS+L+NSQQS+++LS W I HRK A IV W + ++ ++++FLYL
Sbjct: 3 SFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF EF VL A HV DE KK + RL++IW+ER V+G
Sbjct: 63 ANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFI 122
Query: 124 QGLKDEML-GKNPPPVPASNGRS 145
Q LK M K+PPP A +S
Sbjct: 123 QQLKLSMEDSKSPPPKAAEEKKS 145
>RGD|1304782 [details] [associations]
symbol:Rprd1b "regulation of nuclear pre-mRNA domain containing
1B" species:10116 "Rattus norvegicus" [GO:0000993 "RNA polymerase
II core binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO] [GO:0010564 "regulation of cell cycle process"
evidence=ISO] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=ISO] RGD:1304782 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
IPI:IPI00777493 Ensembl:ENSRNOT00000055214 UCSC:RGD:1304782
ArrayExpress:D3ZA87 Uniprot:D3ZA87
Length = 224
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 66/143 (46%), Positives = 90/143 (62%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F L +KLS+L+NSQQS+++LS W I HRK A IV W + ++ ++++FLYL
Sbjct: 3 SFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF EF VL A HV DE KK + RL++IW+ER V+G
Sbjct: 63 ANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFI 122
Query: 124 QGLKDEML-GKNPPPVPASNGRS 145
Q LK M K+PPP A +S
Sbjct: 123 QQLKLSMEDSKSPPPKAAEEKKS 145
>UNIPROTKB|A6QLW3 [details] [associations]
symbol:RPRD1B "RPRD1B protein" species:9913 "Bos taurus"
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0010564 "regulation of cell cycle process"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] GO:GO:0008284 GO:GO:0045944
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 GeneTree:ENSGT00400000022016
KO:K15559 OMA:KKKGPEY GO:GO:0010564 GO:GO:0070940
HOGENOM:HOG000007456 HOVERGEN:HBG051177 CTD:58490 OrthoDB:EOG4255TB
EMBL:DAAA02036557 EMBL:DAAA02036558 EMBL:BC148107 IPI:IPI00703778
RefSeq:NP_001094604.1 UniGene:Bt.29916 SMR:A6QLW3
Ensembl:ENSBTAT00000006703 GeneID:529700 KEGG:bta:529700
InParanoid:A6QLW3 NextBio:20875086 Uniprot:A6QLW3
Length = 326
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 65/143 (45%), Positives = 89/143 (62%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F L +KLS+L+NSQQS+++LS W I HRK A IV W + ++ ++++FLYL
Sbjct: 3 SFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF EF VL A HV DE KK + RL++IW+ER V+G
Sbjct: 63 ANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFI 122
Query: 124 QGLKDEML-GKNPPPVPASNGRS 145
Q LK M K+PPP +S
Sbjct: 123 QQLKLSMEDSKSPPPKATEEKKS 145
>UNIPROTKB|E2RRZ8 [details] [associations]
symbol:RPRD1B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070940 "dephosphorylation of RNA polymerase
II C-terminal domain" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA] [GO:0010564 "regulation of cell cycle
process" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] GO:GO:0008284 GO:GO:0045944
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 CTD:58490 EMBL:AAEX03013924
RefSeq:XP_542990.3 ProteinModelPortal:E2RRZ8 SMR:E2RRZ8
PRIDE:E2RRZ8 Ensembl:ENSCAFT00000014042 GeneID:485866
KEGG:cfa:485866 NextBio:20859769 Uniprot:E2RRZ8
Length = 326
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 65/143 (45%), Positives = 89/143 (62%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F L +KLS+L+NSQQS+++LS W I HRK A IV W + ++ ++++FLYL
Sbjct: 3 SFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF EF VL A HV DE KK + RL++IW+ER V+G
Sbjct: 63 ANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFI 122
Query: 124 QGLKDEML-GKNPPPVPASNGRS 145
Q LK M K+PPP +S
Sbjct: 123 QQLKLSMEDSKSPPPKATEEKKS 145
>UNIPROTKB|Q9NQG5 [details] [associations]
symbol:RPRD1B "Regulation of nuclear pre-mRNA
domain-containing protein 1B" species:9606 "Homo sapiens"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IDA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0010564 "regulation of cell cycle
process" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000993 "RNA polymerase II core binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] EMBL:CH471077
GO:GO:0008284 GO:GO:0045944 GO:GO:0006351 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 GO:GO:0000993
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 HOGENOM:HOG000007456 HOVERGEN:HBG051177
EMBL:DQ372938 EMBL:AK312468 EMBL:AL109823 EMBL:BC001696
EMBL:BC033629 IPI:IPI00009659 RefSeq:NP_067038.1 UniGene:Hs.278839
PDB:4FLA PDB:4FU3 PDB:4HFG PDBsum:4FLA PDBsum:4FU3 PDBsum:4HFG
ProteinModelPortal:Q9NQG5 SMR:Q9NQG5 IntAct:Q9NQG5
MINT:MINT-1475221 STRING:Q9NQG5 PhosphoSite:Q9NQG5 DMDM:23813907
PaxDb:Q9NQG5 PeptideAtlas:Q9NQG5 PRIDE:Q9NQG5 DNASU:58490
Ensembl:ENST00000373433 GeneID:58490 KEGG:hsa:58490 UCSC:uc002xho.4
CTD:58490 GeneCards:GC20P036662 H-InvDB:HIX0015799 HGNC:HGNC:16209
MIM:614694 neXtProt:NX_Q9NQG5 PharmGKB:PA162402043
InParanoid:Q9NQG5 OrthoDB:EOG4255TB PhylomeDB:Q9NQG5 ChiTaRS:RPRD1B
GenomeRNAi:58490 NextBio:64964 ArrayExpress:Q9NQG5 Bgee:Q9NQG5
CleanEx:HS_RPRD1B Genevestigator:Q9NQG5 GermOnline:ENSG00000101413
Uniprot:Q9NQG5
Length = 326
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 65/143 (45%), Positives = 89/143 (62%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F L +KLS+L+NSQQS+++LS W I HRK A IV W + ++ ++++FLYL
Sbjct: 3 SFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF EF VL A HV DE KK + RL++IW+ER V+G
Sbjct: 63 ANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFI 122
Query: 124 QGLKDEML-GKNPPPVPASNGRS 145
Q LK M K+PPP +S
Sbjct: 123 QQLKLSMEDSKSPPPKATEEKKS 145
>UNIPROTKB|F2Z5H3 [details] [associations]
symbol:RPRD1B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0010564 "regulation of cell cycle process"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] GO:GO:0008284 GO:GO:0045944
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 CTD:58490 EMBL:CU467005
EMBL:AEMK01197352 RefSeq:XP_001925742.2 UniGene:Ssc.11514
ProteinModelPortal:F2Z5H3 SMR:F2Z5H3 PRIDE:F2Z5H3
Ensembl:ENSSSCT00000008034 GeneID:100157347 KEGG:ssc:100157347
Uniprot:F2Z5H3
Length = 326
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 65/143 (45%), Positives = 89/143 (62%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F L +KLS+L+NSQQS+++LS W I HRK A IV W + ++ ++++FLYL
Sbjct: 3 SFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF EF VL A HV DE KK + RL++IW+ER V+G
Sbjct: 63 ANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFI 122
Query: 124 QGLKDEML-GKNPPPVPASNGRS 145
Q LK M K+PPP +S
Sbjct: 123 QQLKLSMEDSKSPPPKATEEKKS 145
>UNIPROTKB|Q5F4B4 [details] [associations]
symbol:CREPT "Cell-cycle related and expression-elevated
protein in tumor" species:9031 "Gallus gallus" [GO:0000993 "RNA
polymerase II core binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0010564
"regulation of cell cycle process" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0070940
"dephosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] GO:GO:0008284 GO:GO:0045944 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GeneTree:ENSGT00400000022016 KO:K15559 OMA:KKKGPEY
GO:GO:0010564 GO:GO:0070940 HOGENOM:HOG000007456 HOVERGEN:HBG051177
CTD:58490 OrthoDB:EOG4255TB EMBL:AADN02019053 EMBL:DQ372940
EMBL:AJ851386 IPI:IPI00651204 RefSeq:NP_001026033.1
UniGene:Gga.16262 Ensembl:ENSGALT00000010979 GeneID:419295
KEGG:gga:419295 InParanoid:Q5F4B4 NextBio:20822377 Uniprot:Q5F4B4
Length = 325
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 63/133 (47%), Positives = 85/133 (63%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F L +KLS+L+NSQQS+++LS W I HRK A IV W + ++ ++++FLYL
Sbjct: 3 SFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSSRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF EF VL A HV DE KK + RL++IW+ER V+GS
Sbjct: 63 ANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGSEFI 122
Query: 124 QGLKDEMLGKNPP 136
Q LK M N P
Sbjct: 123 QQLKLSMEDSNSP 135
>UNIPROTKB|Q0P5J9 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9913 "Bos taurus" [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=ISS]
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=ISS] Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 GO:GO:0070940 EMBL:BC119944
IPI:IPI00697180 IPI:IPI00876797 RefSeq:NP_001068624.1
UniGene:Bt.74401 ProteinModelPortal:Q0P5J9 SMR:Q0P5J9 PRIDE:Q0P5J9
Ensembl:ENSBTAT00000007226 Ensembl:ENSBTAT00000056481 GeneID:504355
KEGG:bta:504355 CTD:55197 HOGENOM:HOG000007456 HOVERGEN:HBG051177
InParanoid:Q0P5J9 OMA:SDFLRCQ OrthoDB:EOG4F4SBP NextBio:20866621
Uniprot:Q0P5J9
Length = 312
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 58/133 (43%), Positives = 86/133 (64%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+ +
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVL 122
Query: 124 QGLKDEMLGKNPP 136
+ LK + G P
Sbjct: 123 EQLKQALYGDKKP 135
>UNIPROTKB|Q96P16 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9606 "Homo sapiens"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IDA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IMP] EMBL:CH471088 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GO:GO:0070940 CTD:55197 HOGENOM:HOG000007456
HOVERGEN:HBG051177 OMA:SDFLRCQ OrthoDB:EOG4F4SBP EMBL:AF419845
EMBL:AK001518 EMBL:AK292907 EMBL:AK314569 EMBL:BC000225
EMBL:BC010136 IPI:IPI00062336 IPI:IPI00102425 IPI:IPI00385260
RefSeq:NP_060640.2 UniGene:Hs.464912 ProteinModelPortal:Q96P16
SMR:Q96P16 IntAct:Q96P16 STRING:Q96P16 PhosphoSite:Q96P16
DMDM:74717048 PaxDb:Q96P16 PRIDE:Q96P16 DNASU:55197
Ensembl:ENST00000319040 Ensembl:ENST00000337059
Ensembl:ENST00000357384 Ensembl:ENST00000399022 GeneID:55197
KEGG:hsa:55197 UCSC:uc002kze.1 UCSC:uc002kzg.3 UCSC:uc010dmx.3
GeneCards:GC18M033569 H-InvDB:HIX0014404 HGNC:HGNC:25560
HPA:HPA040602 MIM:610347 neXtProt:NX_Q96P16 PharmGKB:PA162402042
InParanoid:Q96P16 PhylomeDB:Q96P16 ChiTaRS:RPRD1A GenomeRNAi:55197
NextBio:59071 Bgee:Q96P16 CleanEx:HS_RPRD1A Genevestigator:Q96P16
Uniprot:Q96P16
Length = 312
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 58/133 (43%), Positives = 86/133 (64%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+ +
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVL 122
Query: 124 QGLKDEMLGKNPP 136
+ LK + G P
Sbjct: 123 EQLKQALYGDKKP 135
>UNIPROTKB|I3LT67 [details] [associations]
symbol:RPRD1A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=IEA] Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 GO:GO:0070940 OMA:SDFLRCQ
EMBL:FP325286 RefSeq:XP_003356459.1 Ensembl:ENSSSCT00000028030
GeneID:100621319 KEGG:ssc:100621319 Uniprot:I3LT67
Length = 312
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 58/133 (43%), Positives = 86/133 (64%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+ +
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVL 122
Query: 124 QGLKDEMLGKNPP 136
+ LK + G P
Sbjct: 123 EQLKQALYGDKKP 135
>UNIPROTKB|Q5R8Y3 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9601 "Pongo abelii"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=ISS] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=ISS] Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 GO:GO:0070940 CTD:55197
HOVERGEN:HBG051177 OMA:SDFLRCQ EMBL:CR859614 RefSeq:NP_001126030.1
UniGene:Pab.876 ProteinModelPortal:Q5R8Y3 SMR:Q5R8Y3 PRIDE:Q5R8Y3
Ensembl:ENSPPYT00000010637 Ensembl:ENSPPYT00000033804
GeneID:100172978 KEGG:pon:100172978 InParanoid:Q5R8Y3
Uniprot:Q5R8Y3
Length = 312
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 58/133 (43%), Positives = 86/133 (64%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+ +
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVL 122
Query: 124 QGLKDEMLGKNPP 136
+ LK + G P
Sbjct: 123 EQLKQALYGDKKP 135
>MGI|MGI:2385066 [details] [associations]
symbol:Rprd1a "regulation of nuclear pre-mRNA domain
containing 1A" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0016591 "DNA-directed RNA
polymerase II, holoenzyme" evidence=ISO] [GO:0070940
"dephosphorylation of RNA polymerase II C-terminal domain"
evidence=ISO] MGI:MGI:2385066 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 GO:GO:0070940 CTD:55197
HOGENOM:HOG000007456 HOVERGEN:HBG051177 OMA:SDFLRCQ
OrthoDB:EOG4F4SBP EMBL:AK220475 EMBL:BC021395 EMBL:BC023084
IPI:IPI00123724 RefSeq:NP_659110.1 UniGene:Mm.28427
ProteinModelPortal:Q8VDS4 SMR:Q8VDS4 PhosphoSite:Q8VDS4
PaxDb:Q8VDS4 PRIDE:Q8VDS4 Ensembl:ENSMUST00000046206 GeneID:225283
KEGG:mmu:225283 UCSC:uc008egu.1 InParanoid:Q8VDS4 NextBio:377605
Bgee:Q8VDS4 Genevestigator:Q8VDS4 Uniprot:Q8VDS4
Length = 312
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 54/115 (46%), Positives = 79/115 (68%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVY 117
>RGD|1307374 [details] [associations]
symbol:Rprd1a "regulation of nuclear pre-mRNA domain containing
1A" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA;ISO] [GO:0070940 "dephosphorylation of RNA polymerase
II C-terminal domain" evidence=IEA;ISO] RGD:1307374
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 GO:GO:0070940
CTD:55197 OMA:SDFLRCQ OrthoDB:EOG4F4SBP IPI:IPI00763121
RefSeq:XP_001056597.3 RefSeq:XP_214609.6 PRIDE:D4AAU4
Ensembl:ENSRNOT00000021624 GeneID:291736 KEGG:rno:291736
UCSC:RGD:1307374 Uniprot:D4AAU4
Length = 312
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 54/115 (46%), Positives = 79/115 (68%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVY 117
>UNIPROTKB|Q5ZM30 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9031 "Gallus gallus"
[GO:0070940 "dephosphorylation of RNA polymerase II C-terminal
domain" evidence=ISS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577
GO:GO:0070940 CTD:55197 HOGENOM:HOG000007456 HOVERGEN:HBG051177
EMBL:AJ719554 IPI:IPI00681392 RefSeq:NP_001026176.1
UniGene:Gga.12933 ProteinModelPortal:Q5ZM30 GeneID:420953
KEGG:gga:420953 NextBio:20823795 Uniprot:Q5ZM30
Length = 268
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 54/115 (46%), Positives = 76/115 (66%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L KLS+L+NSQQS+++LS W I HRK + IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
AND++QNS+RKG EF +F V+ A KHV DE KK R++ IWEER V+
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSESDESCKKHPGRVLSIWEERSVY 117
>UNIPROTKB|F1NQ92 [details] [associations]
symbol:RPRD1A "Regulation of nuclear pre-mRNA
domain-containing protein 1A" species:9031 "Gallus gallus"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0070940 "dephosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 GO:GO:0070940 OMA:SDFLRCQ
EMBL:AADN02008126 IPI:IPI00579554 Ensembl:ENSGALT00000021433
ArrayExpress:F1NQ92 Uniprot:F1NQ92
Length = 321
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 56/116 (48%), Positives = 75/116 (64%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQR-VSFLY 63
AF L KLS+L+NSQQS+++LS W I HRK + IV W++ K R ++FLY
Sbjct: 12 AFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKVAKPNRKLTFLY 71
Query: 64 LANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
LAND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+
Sbjct: 72 LANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSESDESCKKHLGRVLSIWEERSVY 127
>FB|FBgn0035318 [details] [associations]
symbol:CG9018 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:AE014296 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GeneTree:ENSGT00400000022016
KO:K15559 OMA:KKKGPEY UniGene:Dm.12912 GeneID:38283
KEGG:dme:Dmel_CG9018 FlyBase:FBgn0035318 GenomeRNAi:38283
NextBio:807847 RefSeq:NP_647701.1 ProteinModelPortal:Q9W039
SMR:Q9W039 PRIDE:Q9W039 EnsemblMetazoa:FBtr0072910 UCSC:CG9018-RA
InParanoid:Q9W039 PhylomeDB:Q9W039 ArrayExpress:Q9W039 Bgee:Q9W039
Uniprot:Q9W039
Length = 375
Score = 241 (89.9 bits), Expect = 3.1e-20, P = 3.1e-20
Identities = 53/145 (36%), Positives = 88/145 (60%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KL++LN+SQQSI++LS W I HRK + IV TW + + + ++++F+YL
Sbjct: 3 AFTDSALLKKLAELNSSQQSIQTLSLWLIHHRKHSAAIVRTWQRELENVPEPKKLTFMYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYD--NGDEYGKKAVTRLVDIWEERKVFGSR 122
AND++QNS++KG E+ E+ VL H+ + N D+ ++ R+++IW ER V+ +
Sbjct: 63 ANDVIQNSKKKGPEYGKEYSLVLGKVFAHIGEKCNSDKL-LGSLGRILNIWLERGVYDPK 121
Query: 123 GQGLKDEMLGKNPP-PVPASNGRSS 146
L K P +SNG+++
Sbjct: 122 TIADWRSRLHKEAPGSSSSSNGKTN 146
>CGD|CAL0000943 [details] [associations]
symbol:orf19.7662 species:5476 "Candida albicans" [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000993 "RNA polymerase II core
binding" evidence=IEA] [GO:0010526 "negative regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0031124 "mRNA 3'-end
processing" evidence=IEA] CGD:CAL0000943 EMBL:AACQ01000032
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 eggNOG:NOG291577 KO:K15559 RefSeq:XP_719421.1
ProteinModelPortal:Q5ACI0 GeneID:3638998 KEGG:cal:CaO19.7662
HOGENOM:HOG000246863 Uniprot:Q5ACI0
Length = 335
Score = 213 (80.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 49/118 (41%), Positives = 71/118 (60%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSF--NSSQKEQRVSFL 62
+F KL L+++Q+SI S+S+W + H+K K+ + W +S +R+S L
Sbjct: 2 SFSATAFKFKLDTLSDTQESIVSISQWVLFHQKYYKESAKIWLNYITQDSITPAKRLSLL 61
Query: 63 YLANDILQNSRRKGS-EFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
YL ND++Q +RRK EF+NEF KVLP AL Y N K V RL+++WEERK+F
Sbjct: 62 YLCNDVVQQARRKNKPEFINEFNKVLPDALSKNYGN---LNPK-VDRLLNVWEERKIF 115
Score = 38 (18.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 136 PPVPASNGRSSNPIKIVKRDANSVR-IKLAVGALPEKILTAFQSVLDEHPNEEVALNNCN 194
PP P + K+ N+V IK + ++ + F ++D ++ + N N
Sbjct: 184 PPAPVYLSKLYMLEKLGNVCINNVEEIKETRMKINSELDSLFNLIIDGTKTDDSKIANIN 243
Query: 195 AAVHHAGKVSEDVENT 210
+ A + DV T
Sbjct: 244 EKIQKAKETIRDVNLT 259
>ZFIN|ZDB-GENE-030131-6641 [details] [associations]
symbol:rprd2a "regulation of nuclear pre-mRNA
domain containing 2a" species:7955 "Danio rerio" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-030131-6641 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 EMBL:BC056830 IPI:IPI00502548
RefSeq:NP_956216.1 UniGene:Dr.80327 ProteinModelPortal:Q6PGU3
PRIDE:Q6PGU3 GeneID:334701 KEGG:dre:334701 CTD:334701
HOVERGEN:HBG097713 InParanoid:Q6PGU3 NextBio:20810517 Bgee:Q6PGU3
Uniprot:Q6PGU3
Length = 1113
Score = 212 (79.7 bits), Expect = 6.3e-16, P = 6.3e-16
Identities = 50/148 (33%), Positives = 78/148 (52%)
Query: 11 LSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQ 70
L + ++N+ +SI+ LS WCI ++K IV+ W K S R++ YLAND++Q
Sbjct: 23 LDRRFQTVSNTMESIQGLSTWCIENKKFHSVIVKYWIKWLRKSDASHRLNLFYLANDVIQ 82
Query: 71 NSRRKGS-EFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG-QGLKD 128
N +RK + + F +LP A+ + D KK+V R++ IWEER V+ L++
Sbjct: 83 NCKRKNAIVYRTTFTDLLPEAMHLIRATKDAKVKKSVERILSIWEERNVYSEEFISQLRN 142
Query: 129 EMLGKNPP----PVPASNGRSSNPIKIV 152
+ K P P P N +S+ KIV
Sbjct: 143 SLARKEEPVKVQPAPV-NSKSALKSKIV 169
>WB|WBGene00015347 [details] [associations]
symbol:cids-1 species:6239 "Caenorhabditis elegans"
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0040027 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
EMBL:FO080288 PIR:S44606 RefSeq:NP_498807.2
ProteinModelPortal:P34281 SMR:P34281 PaxDb:P34281
EnsemblMetazoa:C02F5.4 GeneID:176162 KEGG:cel:CELE_C02F5.4
CTD:176162 WormBase:C02F5.4 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 InParanoid:P34281 KO:K15559
OMA:KKKGPEY NextBio:891390 GO:GO:0031124 Uniprot:P34281
Length = 315
Score = 191 (72.3 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 50/195 (25%), Positives = 104/195 (53%)
Query: 6 FDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQR-VSFLYL 64
F Q L +KL+ L+N SI++ S W + + + I+ W K+ + V+ LY+
Sbjct: 4 FTEQTLRQKLTNLSNHPSSIQTTSAWLLQNHSNRELIIRVWLKTVKKETHGSKIVNLLYV 63
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYD--NGDEYGKKAVTRLVDIWEERKVFG-S 121
AND+ QN+R+ +F +EF+ + ++ +H + N E + A+ +L+++W++R++F S
Sbjct: 64 ANDVSQNARKTCPQFKDEFFPAIESSFRHAIELKNAKEV-EHAIGKLINVWKDRQIFTPS 122
Query: 122 RGQGLKD-----EMLGKNPPPVPAS--NGRSSNPIKIVKRDA--NSVRIKLAVGAL--PE 170
+ + L + ++ G P P A+ +G+ + P + V +A N+ + L++ L P
Sbjct: 123 QCKRLHEVHQQVKLSGSFPTPAVANKEHGKVAQPSQFVVEEAKKNAQDVLLSLKRLQNPP 182
Query: 171 KILTAFQSVLDEHPN 185
++ L ++P+
Sbjct: 183 STEREIRTELSKYPD 197
>UNIPROTKB|P34281 [details] [associations]
symbol:cids-1 "CID domain-containing protein 1"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0040027
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 EMBL:FO080288 PIR:S44606 RefSeq:NP_498807.2
ProteinModelPortal:P34281 SMR:P34281 PaxDb:P34281
EnsemblMetazoa:C02F5.4 GeneID:176162 KEGG:cel:CELE_C02F5.4
CTD:176162 WormBase:C02F5.4 eggNOG:NOG291577
GeneTree:ENSGT00400000022016 InParanoid:P34281 KO:K15559
OMA:KKKGPEY NextBio:891390 GO:GO:0031124 Uniprot:P34281
Length = 315
Score = 191 (72.3 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 50/195 (25%), Positives = 104/195 (53%)
Query: 6 FDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQR-VSFLYL 64
F Q L +KL+ L+N SI++ S W + + + I+ W K+ + V+ LY+
Sbjct: 4 FTEQTLRQKLTNLSNHPSSIQTTSAWLLQNHSNRELIIRVWLKTVKKETHGSKIVNLLYV 63
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYD--NGDEYGKKAVTRLVDIWEERKVFG-S 121
AND+ QN+R+ +F +EF+ + ++ +H + N E + A+ +L+++W++R++F S
Sbjct: 64 ANDVSQNARKTCPQFKDEFFPAIESSFRHAIELKNAKEV-EHAIGKLINVWKDRQIFTPS 122
Query: 122 RGQGLKD-----EMLGKNPPPVPAS--NGRSSNPIKIVKRDA--NSVRIKLAVGAL--PE 170
+ + L + ++ G P P A+ +G+ + P + V +A N+ + L++ L P
Sbjct: 123 QCKRLHEVHQQVKLSGSFPTPAVANKEHGKVAQPSQFVVEEAKKNAQDVLLSLKRLQNPP 182
Query: 171 KILTAFQSVLDEHPN 185
++ L ++P+
Sbjct: 183 STEREIRTELSKYPD 197
>UNIPROTKB|H9L0N7 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
PROSITE:PS51391 GeneTree:ENSGT00400000022016 OMA:GKGNRGH
EMBL:AADN02044034 EMBL:AADN02015890 EMBL:AADN02015891
EMBL:AADN02015892 EMBL:AADN02015893 EMBL:AADN02015894
EMBL:AADN02044035 EMBL:AADN02044036 EMBL:AADN02044037
EMBL:AADN02044038 EMBL:AADN02044039 EMBL:AADN02044040
EMBL:AADN02044041 EMBL:AADN02044042 EMBL:AADN02058745
EMBL:AADN02058746 EMBL:AADN02058747 EMBL:AADN02058748
Ensembl:ENSGALT00000023620 Uniprot:H9L0N7
Length = 1455
Score = 193 (73.0 bits), Expect = 9.3e-14, P = 9.3e-14
Identities = 55/173 (31%), Positives = 83/173 (47%)
Query: 14 KLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSR 73
KL + N+ +SI+ LS WC+ +++ IV W K S R++ YLAND++QN +
Sbjct: 31 KLQAVTNTMESIQGLSSWCLENKRHHNTIVYHWMKWLRRSAFPHRLNLFYLANDVIQNCK 90
Query: 74 RKGS-EFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG-QGLKDEML 131
RK + F + F +VLP A V D K++ R+ IWE+R V+ LK+ +
Sbjct: 91 RKNAIVFRDTFAEVLPEAASLVKDPSVS---KSIERIFKIWEDRNVYPEETILALKEALS 147
Query: 132 GKNPPPVPASNGRSSNPIKIVKRDANSVRIKLAVGALPEKILTAF--QSVLDE 182
+ P K K+ S K AL KI+ F QS++DE
Sbjct: 148 TTFKTQKQLKETLNKQPNKPWKKSQTSANPK---AALKSKIVAEFRPQSLIDE 197
>UNIPROTKB|Q5VT52 [details] [associations]
symbol:RPRD2 "Regulation of nuclear pre-mRNA
domain-containing protein 2" species:9606 "Homo sapiens"
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IDA] EMBL:CH471121 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 GO:GO:0016591 EMBL:AL356356 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG331230 EMBL:AL611942 EMBL:AK056707 EMBL:AK291703
EMBL:BX641025 EMBL:BX284695 EMBL:BC045623 EMBL:AF161362
EMBL:AB007929 IPI:IPI00384541 IPI:IPI00639879 IPI:IPI00647267
IPI:IPI00760919 PIR:T00074 RefSeq:NP_056018.2 UniGene:Hs.213666
PDB:4FLB PDBsum:4FLB ProteinModelPortal:Q5VT52 SMR:Q5VT52
IntAct:Q5VT52 MINT:MINT-1603162 PhosphoSite:Q5VT52 DMDM:74746888
PaxDb:Q5VT52 PRIDE:Q5VT52 DNASU:23248 Ensembl:ENST00000369067
Ensembl:ENST00000369068 Ensembl:ENST00000401000
Ensembl:ENST00000579067 Ensembl:ENST00000584319
Ensembl:ENST00000584841 GeneID:23248 KEGG:hsa:23248 UCSC:uc001eup.4
UCSC:uc009wlr.3 CTD:23248 GeneCards:GC01P150335 H-InvDB:HIX0019981
HGNC:HGNC:29039 HPA:HPA045778 MIM:614695 neXtProt:NX_Q5VT52
PharmGKB:PA162402062 HOVERGEN:HBG104176 InParanoid:Q5VT52
OMA:GKGNRGH ChiTaRS:RPRD2 GenomeRNAi:23248 NextBio:44942
ArrayExpress:Q5VT52 Bgee:Q5VT52 CleanEx:HS_RPRD2
Genevestigator:Q5VT52 GermOnline:ENSG00000163125 Uniprot:Q5VT52
Length = 1461
Score = 189 (71.6 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 54/170 (31%), Positives = 77/170 (45%)
Query: 11 LSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQ 70
L K + N+ +SI+ LS WCI ++K IV W K S R++ YLAND++Q
Sbjct: 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 86
Query: 71 NSRRKGSEFVNE-FWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG-QGLKD 128
N +RK + E F VLP A V D K+V R+ IWE+R V+ L++
Sbjct: 87 NCKRKNAIIFRESFADVLPEAAALVKDPSVS---KSVERIFKIWEDRNVYPEEMIVALRE 143
Query: 129 EMLGKNPPPVPASNGRSSNPIKIVKRDANSVRIKLAVGALPEKILTAFQS 178
+ + P K K+ S K AL KI+ F+S
Sbjct: 144 ALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPK---AALKSKIVAEFRS 190
>ASPGD|ASPL0000042222 [details] [associations]
symbol:AN2049 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0071585
"detoxification of cadmium ion" evidence=IEA] [GO:0071276 "cellular
response to cadmium ion" evidence=IEA] EMBL:BN001307
EMBL:AACD01000032 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 eggNOG:NOG291577 KO:K15559
OrthoDB:EOG4X0R2T RefSeq:XP_659653.1 ProteinModelPortal:Q5BBN1
EnsemblFungi:CADANIAT00008718 GeneID:2875473 KEGG:ani:AN2049.2
HOGENOM:HOG000190337 OMA:IVTVAQW Uniprot:Q5BBN1
Length = 414
Score = 175 (66.7 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 32/116 (27%), Positives = 66/116 (56%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
A+ + KLS LN +Q+ I ++++W + HR+ A++ + W + S +R++ +YL
Sbjct: 2 AYTDDSVKAKLSALNETQEGIVTVAQWVMFHRRHAERTAQLWLQKLRDSPAAKRLNLIYL 61
Query: 65 ANDILQNSR-RKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
AN++ Q SR R+ +F+ F ++ A+ Y ++ + R+V++W +R +F
Sbjct: 62 ANEVAQQSRARRKEDFLIAFSPIIAEAVAIAYKGASNDIQQKLRRVVEVWRQRNIF 117
>MGI|MGI:1922387 [details] [associations]
symbol:Rprd2 "regulation of nuclear pre-mRNA domain
containing 2" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISO] MGI:MGI:1922387 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0016591 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
GeneTree:ENSGT00400000022016 eggNOG:NOG331230 CTD:23248
HOVERGEN:HBG104176 OMA:GKGNRGH ChiTaRS:RPRD2 EMBL:BC067054
EMBL:AK129150 EMBL:AK154692 IPI:IPI00454123 IPI:IPI00762512
RefSeq:NP_001074762.1 UniGene:Mm.196275 ProteinModelPortal:Q6NXI6
SMR:Q6NXI6 PhosphoSite:Q6NXI6 PaxDb:Q6NXI6 PRIDE:Q6NXI6
Ensembl:ENSMUST00000090791 GeneID:75137 KEGG:mmu:75137
UCSC:uc008qkx.1 UCSC:uc008qky.1 HOGENOM:HOG000154192
InParanoid:Q6NXI6 OrthoDB:EOG4XSKQN NextBio:342303 Bgee:Q6NXI6
Genevestigator:Q6NXI6 GermOnline:ENSMUSG00000028106 Uniprot:Q6NXI6
Length = 1469
Score = 182 (69.1 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 41/110 (37%), Positives = 58/110 (52%)
Query: 11 LSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQ 70
L K + N+ +SI+ LS WCI ++K IV W K S R++ YLAND++Q
Sbjct: 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQ 86
Query: 71 NSRRKGSEFVNE-FWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
N +RK + E F VLP A V D K++ R+ IWE+R V+
Sbjct: 87 NCKRKNAIIFRESFADVLPEAAALVKDPSVS---KSIERIFKIWEDRNVY 133
>UNIPROTKB|I3LG94 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GeneTree:ENSGT00400000022016
OMA:GKGNRGH EMBL:FP312851 Ensembl:ENSSSCT00000022559 Uniprot:I3LG94
Length = 1477
Score = 181 (68.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 41/110 (37%), Positives = 58/110 (52%)
Query: 11 LSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQ 70
L K + N+ +SI+ LS WCI ++K IV W K S R++ YLAND++Q
Sbjct: 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 86
Query: 71 NSRRKGSEFVNE-FWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
N +RK + E F VLP A V D K++ R+ IWE+R V+
Sbjct: 87 NCKRKNAIIFRESFADVLPEAAALVKDPSVS---KSIERIFKIWEDRNVY 133
>UNIPROTKB|G3MX56 [details] [associations]
symbol:RPRD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
GO:GO:0016591 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 GeneTree:ENSGT00400000022016
OMA:GKGNRGH EMBL:DAAA02007262 Ensembl:ENSBTAT00000063685
Uniprot:G3MX56
Length = 1485
Score = 181 (68.8 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 41/110 (37%), Positives = 58/110 (52%)
Query: 11 LSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQ 70
L K + N+ +SI+ LS WCI ++K IV W K S R++ YLAND++Q
Sbjct: 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHTTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 86
Query: 71 NSRRKGSEFVNE-FWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
N +RK + E F VLP A V D K++ R+ IWE+R V+
Sbjct: 87 NCKRKNAIIFRESFADVLPEAAALVKDPSVS---KSIERIFKIWEDRNVY 133
>POMBASE|SPBC337.03 [details] [associations]
symbol:rhn1 "RNA polymerase II transcription termination
factor homolog" species:4896 "Schizosaccharomyces pombe"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030846
"termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=ISO] [GO:0071276 "cellular response to cadmium ion"
evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] PomBase:SPBC337.03 GO:GO:0005829 GO:GO:0005634
EMBL:CU329671 GO:GO:0071276 GO:GO:0071585 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 KO:K15559 GO:GO:0030846 OMA:ASESCKG
OrthoDB:EOG4X0R2T PIR:T40256 RefSeq:NP_595404.1
ProteinModelPortal:O74814 EnsemblFungi:SPBC337.03.1 GeneID:2540220
KEGG:spo:SPBC337.03 NextBio:20801352 Uniprot:O74814
Length = 387
Score = 156 (60.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 31/110 (28%), Positives = 63/110 (57%)
Query: 11 LSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQ 70
+S KL+ LN +Q+SI ++ W + H++ A +IV+ W ++ S +++ LYL N+++Q
Sbjct: 8 VSSKLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLNEVVQ 67
Query: 71 NSR-RKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
SR +K SE+++ + ++ Y + K + + D+W +R +F
Sbjct: 68 QSRVKKISEYIDAVSPYVVNSVADAYASVPASIKTKIKYVFDVWCQRGIF 117
>SGD|S000002697 [details] [associations]
symbol:RTT103 "Protein involved in transcription termination
by RNA polymerase II" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA] [GO:0010526 "negative
regulation of transposition, RNA-mediated" evidence=IMP]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0031124 "mRNA
3'-end processing" evidence=IGI;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0035861 "site of double-strand
break" evidence=IDA] [GO:0000993 "RNA polymerase II core binding"
evidence=IDA;IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] SGD:S000002697 GO:GO:0006355 GO:GO:0003677
EMBL:BK006938 GO:GO:0006351 GO:GO:0000790 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0000993 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 PROSITE:PS51391
eggNOG:NOG291577 GeneTree:ENSGT00400000022016 KO:K15559
GO:GO:0031124 GO:GO:0010526 GO:GO:0035861 EMBL:U51031 PDB:2L0I
PDBsum:2L0I EMBL:AY557793 PIR:S70119 RefSeq:NP_010575.1 PDB:2KM4
PDBsum:2KM4 ProteinModelPortal:Q05543 SMR:Q05543 DIP:DIP-2583N
IntAct:Q05543 MINT:MINT-425860 STRING:Q05543 PaxDb:Q05543
EnsemblFungi:YDR289C GeneID:851884 KEGG:sce:YDR289C CYGD:YDR289c
HOGENOM:HOG000141975 OMA:ASESCKG OrthoDB:EOG4X0R2T
EvolutionaryTrace:Q05543 NextBio:969856 Genevestigator:Q05543
GermOnline:YDR289C Uniprot:Q05543
Length = 409
Score = 143 (55.4 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 51/208 (24%), Positives = 93/208 (44%)
Query: 6 FDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSF--NSSQKEQRVSFLY 63
F + + KL+ L +SQ+SI S S+W + + A ++ E W + S +++ LY
Sbjct: 3 FSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLY 62
Query: 64 LANDILQNSR-RKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSR 122
L N ++Q ++ +K +F + F KV L + KK ++R+V+I +ER +F +
Sbjct: 63 LMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQ 122
Query: 123 GQGLKDEMLGKNPPPVPASNGRSSNPIKIVKRDANSVRIKLAVGALPEKILTAFQSVLDE 182
+ L PV A +K +D + +K+ K+ F DE
Sbjct: 123 VVNDIERSLKTESSPVEALV--LPQKLKDFAKDYEKL-VKMHHNVCAMKM--RFDKSSDE 177
Query: 183 -HPNEEVALNNCNAAVHHAGKVSEDVEN 209
P+ V N + G +++D+ N
Sbjct: 178 LDPSSSVYEENFKT-ISKIGNMAKDIIN 204
>TAIR|locus:2128091 [details] [associations]
symbol:AT4G31200 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0048046 "apoplast" evidence=IDA] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0048046 GO:GO:0003723 GO:GO:0006396
EMBL:AL161578 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 EMBL:AL021633
EMBL:BT010740 EMBL:AK229583 IPI:IPI00537400 PIR:T04487
RefSeq:NP_194848.1 RefSeq:NP_849479.1 RefSeq:NP_974650.1
UniGene:At.31766 ProteinModelPortal:O49570 SMR:O49570 PaxDb:O49570
PRIDE:O49570 EnsemblPlants:AT4G31200.1 EnsemblPlants:AT4G31200.2
EnsemblPlants:AT4G31200.3 GeneID:829247 KEGG:ath:AT4G31200
TAIR:At4g31200 eggNOG:NOG240237 HOGENOM:HOG000242029
InParanoid:O49570 OMA:VYDQETI PhylomeDB:O49570
ProtClustDB:CLSN2685840 ArrayExpress:O49570 Genevestigator:O49570
Uniprot:O49570
Length = 650
Score = 123 (48.4 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 44/149 (29%), Positives = 72/149 (48%)
Query: 11 LSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETW-DKSFNSSQKEQRVSFLYLANDIL 69
L+ L LN +++SI+S W + A + E D+ F ++++ +YLANDIL
Sbjct: 275 LNGVLGNLNGTKESIKSAKIWFMQRSPFAPALAEALRDRVFAMDDSDRQMHIVYLANDIL 334
Query: 70 QNS--RRKG-SEFVNE---FWKVLPAALKHVYD--NGDEYGKKAVTRLVDIWEERKVFGS 121
+S RR EF NE F +L + L +Y E + + +++ W ++VF
Sbjct: 335 FDSLQRRTNLHEFDNEALAFRPILGSMLGRIYHFPQNKEENQSRLEKILQFWASKEVFDQ 394
Query: 122 RG-QGLKDEMLGKNPPPVPASNGRSSNPI 149
L+ EM K+ PP +N S +PI
Sbjct: 395 DTISSLEKEM--KSGPP---ANTFSHSPI 418
>WB|WBGene00020092 [details] [associations]
symbol:pcf-11 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] GO:GO:0008340 GO:GO:0009792 GO:GO:0006915
GO:GO:0002119 GO:GO:0000003 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 PROSITE:PS51391 KO:K14400 EMBL:FO080694 PIR:T16758
RefSeq:NP_498068.1 ProteinModelPortal:Q09345 SMR:Q09345
IntAct:Q09345 STRING:Q09345 PaxDb:Q09345 PRIDE:Q09345
EnsemblMetazoa:R144.2a GeneID:246008 KEGG:cel:CELE_R144.2
UCSC:R144.2b CTD:246008 WormBase:R144.2a eggNOG:NOG268273
GeneTree:ENSGT00440000034259 HOGENOM:HOG000020904 InParanoid:Q09345
OMA:PANNRIF NextBio:951598 ArrayExpress:Q09345 Uniprot:Q09345
Length = 823
Score = 114 (45.2 bits), Expect = 0.00071, P = 0.00071
Identities = 33/139 (23%), Positives = 67/139 (48%)
Query: 13 EKLSKL-NNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQN 71
E L++L NN++ I L+ +K A QIVE ++ + Q++ +Y+ + IL+N
Sbjct: 13 ETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSPSQKLLVMYVCDSILKN 72
Query: 72 SRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRGQGLKDEML 131
+ K +++ F + + + +H + GDE + ++ R+ W +F D +
Sbjct: 73 VK-KPNDYDALFARKIVSMFEHAFRQGDERIRTSLYRIRVTWASTTLFMPSKLYELDMKI 131
Query: 132 GKNPPPVPASNGRSSNPIK 150
K P P SN ++ ++
Sbjct: 132 NKLDPNWPISNPQTGRALR 150
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.128 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 213 213 0.00084 112 3 11 23 0.44 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 611 (65 KB)
Total size of DFA: 180 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.81u 0.20s 22.01t Elapsed: 00:00:01
Total cpu time: 21.81u 0.20s 22.01t Elapsed: 00:00:01
Start: Thu May 9 15:17:31 2013 End: Thu May 9 15:17:32 2013