BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046621
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CSU0|RPR1B_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus
musculus GN=Rprd1b PE=1 SV=2
Length = 326
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F L +KLS+L+NSQQS+++LS W I HRK A IV W + ++ ++++FLYL
Sbjct: 3 SFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF EF VL A HV DE KK + RL++IW+ER V+G
Sbjct: 63 ANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFI 122
Query: 124 QGLKDEML-GKNPPPVPASNGRS 145
Q LK M K+PPP A +S
Sbjct: 123 QQLKLSMEDSKSPPPKAAEEKKS 145
>sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo
sapiens GN=RPRD1B PE=1 SV=1
Length = 326
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 87/135 (64%), Gaps = 2/135 (1%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
+F L +KLS+L+NSQQS+++LS W I HRK A IV W + ++ ++++FLYL
Sbjct: 3 SFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG- 123
AND++QNS+RKG EF EF VL A HV DE KK + RL++IW+ER V+G
Sbjct: 63 ANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFI 122
Query: 124 QGLKDEML-GKNPPP 137
Q LK M K+PPP
Sbjct: 123 QQLKLSMEDSKSPPP 137
>sp|Q5R8Y3|RPR1A_PONAB Regulation of nuclear pre-mRNA domain-containing protein 1A
OS=Pongo abelii GN=RPRD1A PE=2 SV=1
Length = 312
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF-GSRG 123
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVL 122
Query: 124 QGLKDEMLGKNPP 136
+ LK + G P
Sbjct: 123 EQLKQALYGDKKP 135
>sp|Q96P16|RPR1A_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo
sapiens GN=RPRD1A PE=1 SV=1
Length = 312
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF-GSRG 123
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVL 122
Query: 124 QGLKDEMLGKNPP 136
+ LK + G P
Sbjct: 123 EQLKQALYGDKKP 135
>sp|Q0P5J9|RPR1A_BOVIN Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos
taurus GN=RPRD1A PE=2 SV=2
Length = 312
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF-GSRG 123
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVL 122
Query: 124 QGLKDEMLGKNPP 136
+ LK + G P
Sbjct: 123 EQLKQALYGDKKP 135
>sp|Q8VDS4|RPR1A_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Mus
musculus GN=Rprd1a PE=2 SV=1
Length = 312
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 79/115 (68%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L +KLS+L+NSQQS+++LS W I HRK ++ IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
AND++QNS+RKG EF +F V+ A KHV DE KK + R++ IWEER V+
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVY 117
>sp|Q5ZM30|RPR1A_CHICK Regulation of nuclear pre-mRNA domain-containing protein 1A
OS=Gallus gallus GN=RPRD1A PE=2 SV=1
Length = 268
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 76/115 (66%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
AF L KLS+L+NSQQS+++LS W I HRK + IV W++ ++ ++++FLYL
Sbjct: 3 AFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKAKPNRKLTFLYL 62
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
AND++QNS+RKG EF +F V+ A KHV DE KK R++ IWEER V+
Sbjct: 63 ANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSESDESCKKHPGRVLSIWEERSVY 117
>sp|A8WLG6|CIDS1_CAEBR CID domain-containing protein 1 OS=Caenorhabditis briggsae
GN=cids-1 PE=4 SV=1
Length = 311
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 94/169 (55%), Gaps = 11/169 (6%)
Query: 6 FDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRV-SFLYL 64
F Q L +KL+ L+N SI++ S W + + + I+ W K+ K +V + LY+
Sbjct: 4 FTEQTLRQKLANLSNHSNSIQTTSSWLLKNHNNREIIIRVWLKTVRKENKGAKVVNLLYV 63
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFG-SRG 123
AND+ QN+R+ +F ++F+ + +A +H + + + A+ +L+ +W+ER+++ S+
Sbjct: 64 ANDVAQNARKACPQFKDDFFPAIESAFRHCCELKAKEVENAIGKLIHVWKERQIYSQSQC 123
Query: 124 QGLKD-----EMLGKNPPPVPASNGRSSNPIKIV----KRDANSVRIKL 163
+ L++ ++ G P P +NG++S P + + K++A V + L
Sbjct: 124 KRLQEAHQQMKLSGSFPSPAGRNNGKNSQPNQFIVEEAKKNAQDVLVSL 172
>sp|Q5VT52|RPRD2_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo
sapiens GN=RPRD2 PE=1 SV=1
Length = 1461
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 11 LSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQ 70
L K + N+ +SI+ LS WCI ++K IV W K S R++ YLAND++Q
Sbjct: 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 86
Query: 71 NSRRKGSEFVNE-FWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
N +RK + E F VLP A V D K+V R+ IWE+R V+
Sbjct: 87 NCKRKNAIIFRESFADVLPEAAALVKDPS---VSKSVERIFKIWEDRNVY 133
>sp|Q6NXI6|RPRD2_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Mus
musculus GN=Rprd2 PE=1 SV=1
Length = 1469
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 11 LSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQ 70
L K + N+ +SI+ LS WCI ++K IV W K S R++ YLAND++Q
Sbjct: 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQ 86
Query: 71 NSRRKGSEFVNE-FWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
N +RK + E F VLP A V D K++ R+ IWE+R V+
Sbjct: 87 NCKRKNAIIFRESFADVLPEAAALVKDPSV---SKSIERIFKIWEDRNVY 133
>sp|P34281|CIDS1_CAEEL CID domain-containing protein 1 OS=Caenorhabditis elegans GN=cids-1
PE=4 SV=2
Length = 315
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 103/195 (52%), Gaps = 16/195 (8%)
Query: 6 FDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFN-SSQKEQRVSFLYL 64
F Q L +KL+ L+N SI++ S W + + + I+ W K+ + + V+ LY+
Sbjct: 4 FTEQTLRQKLTNLSNHPSSIQTTSAWLLQNHSNRELIIRVWLKTVKKETHGSKIVNLLYV 63
Query: 65 ANDILQNSRRKGSEFVNEFWKVLPAALKHVYD--NGDEYGKKAVTRLVDIWEERKVFG-S 121
AND+ QN+R+ +F +EF+ + ++ +H + N E + A+ +L+++W++R++F S
Sbjct: 64 ANDVSQNARKTCPQFKDEFFPAIESSFRHAIELKNAKEV-EHAIGKLINVWKDRQIFTPS 122
Query: 122 RGQGLKD-----EMLGKNPPPVPAS--NGRSSNPIKIV----KRDANSVRIKLAVGALPE 170
+ + L + ++ G P P A+ +G+ + P + V K++A V + L P
Sbjct: 123 QCKRLHEVHQQVKLSGSFPTPAVANKEHGKVAQPSQFVVEEAKKNAQDVLLSLKRLQNPP 182
Query: 171 KILTAFQSVLDEHPN 185
++ L ++P+
Sbjct: 183 STEREIRTELSKYPD 197
>sp|O74814|YJ03_SCHPO UPF0400 protein C337.03 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPBC337.03 PE=1 SV=1
Length = 387
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYL 64
A +S KL+ LN +Q+SI ++ W + H++ A +IV+ W ++ S +++ LYL
Sbjct: 2 ALTPDTVSSKLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYL 61
Query: 65 ANDILQNSR-RKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFG 120
N+++Q SR +K SE+++ + ++ Y + K + + D+W +R +F
Sbjct: 62 LNEVVQQSRVKKISEYIDAVSPYVVNSVADAYASVPASIKTKIKYVFDVWCQRGIFS 118
>sp|Q05543|RT103_YEAST Regulator of Ty1 transposition protein 103 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RTT103 PE=1
SV=1
Length = 409
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 6 FDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSF--NSSQKEQRVSFLY 63
F + + KL+ L +SQ+SI S S+W + + A ++ E W + S +++ LY
Sbjct: 3 FSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLY 62
Query: 64 LANDILQNSR-RKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSR 122
L N ++Q ++ +K +F + F KV L + KK ++R+V+I +ER +F +
Sbjct: 63 LMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQ 122
Query: 123 GQGLKDEMLGKNPPPVPA 140
+ L PV A
Sbjct: 123 VVNDIERSLKTESSPVEA 140
>sp|Q09345|PCF11_CAEEL Polyadenylation and cleavage factor homolog 11 OS=Caenorhabditis
elegans GN=pcf-11 PE=2 SV=1
Length = 823
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 13 EKLSKL-NNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQN 71
E L++L NN++ I L+ +K A QIVE ++ + Q++ +Y+ + IL+N
Sbjct: 13 ETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSPSQKLLVMYVCDSILKN 72
Query: 72 SRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVF 119
+K +++ F + + + +H + GDE + ++ R+ W +F
Sbjct: 73 V-KKPNDYDALFARKIVSMFEHAFRQGDERIRTSLYRIRVTWASTTLF 119
>sp|O94913|PCF11_HUMAN Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11
PE=1 SV=3
Length = 1555
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 20 NSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEF 79
NS+ I L+ + AK+IV + + +++ +YL + I++N G E+
Sbjct: 32 NSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNV---GREY 88
Query: 80 VNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEE 115
+ F K L A V++ DE +K++ +L W+E
Sbjct: 89 LTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDE 124
>sp|O74767|COPE_SCHPO Probable coatomer subunit epsilon OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec28 PE=1 SV=1
Length = 288
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 142 NGRSSNPIKIVKRDANSVRIKLAVGALPEKILTAFQSVLDEHPNEEVALNNCNAAVHHAG 201
NG SNP+ + + + PE+ L++ ++ LD PN E AL+N A+ G
Sbjct: 190 NGTDSNPMTLTGMACADICL-----LRPEEALSSLKTALDSQPNYEEALSNMTTAITDLG 244
>sp|Q9EVV7|RECA_STRTR Protein RecA OS=Streptococcus thermophilus GN=recA PE=3 SV=1
Length = 379
Score = 33.5 bits (75), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 79 FVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRGQGLKDEMLGKNPPP- 137
F +E WK L ALK++ G ++GK AV RL + EE+ S G D LG P
Sbjct: 15 FGDERWKALDDALKNI---GKDFGKGAVMRLGERAEEKVQVMSSGSLALDIALGAGGYPK 71
Query: 138 -------VPASNGRSSNPIKIVKR 154
P S+G+++ + V +
Sbjct: 72 GRIIEIYGPESSGKTTVALHAVAQ 95
>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens
GN=CHERP PE=1 SV=3
Length = 916
Score = 30.8 bits (68), Expect = 6.9, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 56 EQRVSFLYLANDILQNSRRK-GSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWE 114
E R+ +YL ND+L + +RK E + KV+ + +E ++ + RL+ +WE
Sbjct: 209 ELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWE 268
Query: 115 ERKVF 119
+ F
Sbjct: 269 KNGYF 273
>sp|Q8DAV2|MSBA_VIBVU Lipid A export ATP-binding/permease protein MsbA OS=Vibrio
vulnificus (strain CMCP6) GN=msbA PE=3 SV=1
Length = 583
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 95 YDNGDEYGKKAVTRLVDIWEERKVFGSRGQGLKDEMLGKNPPPVPASNGRSSNPIKIVKR 154
Y GD+Y ++ + R ++ + GL D M+G+N + + + + R
Sbjct: 439 YAAGDKYSREDIERAAELAHAMEFISKMENGL-DTMVGENGASLSGGQRQRVAIARALLR 497
Query: 155 DANSVRIKLAVGALPEKILTAFQSVLDE 182
DA + + A AL + A QS LDE
Sbjct: 498 DAPVLILDEATSALDTESERAIQSALDE 525
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus
GN=Cherp PE=1 SV=1
Length = 936
Score = 30.8 bits (68), Expect = 7.4, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 56 EQRVSFLYLANDILQNSRRK-GSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWE 114
E R+ +YL ND+L + +RK E + KV+ + +E ++ + RL+ +WE
Sbjct: 209 ELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWE 268
Query: 115 ERKVF 119
+ F
Sbjct: 269 KNGYF 273
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,660,293
Number of Sequences: 539616
Number of extensions: 3268592
Number of successful extensions: 7294
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7269
Number of HSP's gapped (non-prelim): 32
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)