Query 046621
Match_columns 213
No_of_seqs 167 out of 416
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 04:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km4_A Regulator of TY1 transp 100.0 1.7E-38 5.7E-43 253.6 12.9 129 5-133 2-134 (142)
2 4fu3_A Regulation of nuclear P 100.0 2.3E-38 7.9E-43 249.2 9.4 134 3-136 1-135 (135)
3 4flb_A Regulation of nuclear P 100.0 1.3E-34 4.4E-39 227.3 8.5 125 4-131 3-129 (132)
4 3d9j_A RNA-binding protein 16; 100.0 5.9E-28 2E-32 193.3 12.7 123 8-131 4-136 (145)
5 1sz9_A PCF11 protein; RNA poly 99.9 1.2E-26 4.2E-31 185.5 11.9 120 9-131 10-136 (144)
6 3clj_A Protein NRD1; CTD-inter 99.7 6.1E-16 2.1E-20 125.0 14.1 122 8-129 3-144 (157)
7 1x5b_A Signal transducing adap 94.4 0.46 1.6E-05 37.7 10.7 108 6-122 11-130 (163)
8 3ldz_A STAM-1, signal transduc 91.7 2.5 8.5E-05 32.4 10.9 85 23-115 24-114 (140)
9 1dvp_A HRS, hepatocyte growth 90.5 1.9 6.3E-05 35.4 9.7 102 11-121 6-119 (220)
10 3zyq_A Hepatocyte growth facto 90.5 2.1 7.1E-05 35.5 10.0 104 10-122 8-123 (226)
11 1mhq_A ADP-ribosylation factor 89.7 2.5 8.4E-05 32.9 9.3 95 23-122 20-121 (148)
12 3g2s_A C-terminal fragment of 89.5 2.8 9.7E-05 32.6 9.5 107 10-121 11-130 (149)
13 1juq_A ADP-ribosylation factor 88.7 3.5 0.00012 32.8 9.7 107 10-122 13-133 (171)
14 1elk_A Target of MYB1; superhe 86.5 5.3 0.00018 31.2 9.4 109 3-115 10-130 (157)
15 4fla_A Regulation of nuclear P 83.6 0.29 1E-05 38.7 0.8 33 162-194 17-49 (152)
16 3rru_A TOM1L1 protein; structu 67.8 25 0.00086 27.2 8.0 113 3-121 10-134 (152)
17 2jak_A Serine/threonine-protei 66.6 18 0.0006 32.7 7.7 85 29-119 284-368 (392)
18 4e2i_2 DNA polymerase alpha su 52.6 22 0.00074 24.9 4.5 46 6-51 3-50 (78)
19 3fga_B Serine/threonine-protei 52.0 33 0.0011 31.0 6.8 87 28-120 238-324 (403)
20 2npp_B PP2A, B subunit, serine 51.7 32 0.0011 31.5 6.8 85 29-119 272-356 (449)
21 2qk1_A Protein STU2; STU2P, XM 44.0 1.3E+02 0.0043 24.4 9.5 111 8-121 103-224 (249)
22 2jtt_C Calcyclin-binding prote 39.2 25 0.00086 20.8 2.7 22 87-108 8-29 (35)
23 2pv4_A Uncharacterized protein 38.6 66 0.0022 24.8 5.6 56 56-111 70-144 (145)
24 2keb_A DNA polymerase subunit 37.0 91 0.0031 22.7 5.9 45 6-50 26-72 (101)
25 1k19_A Chemosensory protein CS 35.6 22 0.00075 26.5 2.5 39 77-115 37-75 (112)
26 2gvs_A Chemosensory protein CS 35.1 26 0.00089 25.9 2.8 38 78-115 40-77 (109)
27 1v9v_A KIAA0561 protein; helix 25.7 2.1E+02 0.007 21.3 7.4 51 62-112 46-102 (114)
28 1j1d_B Troponin T, TNT; THIN f 24.1 1.5E+02 0.0053 21.5 5.4 39 168-206 25-64 (106)
29 1k1f_A Breakpoint cluster regi 22.8 56 0.0019 22.2 2.5 18 185-202 30-47 (72)
30 3ajf_A Non-structural protein 21.6 1.9E+02 0.0064 20.4 5.1 49 4-52 32-90 (94)
31 2ekk_A UBA domain from E3 ubiq 21.2 90 0.0031 18.8 3.1 27 5-35 20-46 (47)
No 1
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=100.00 E-value=1.7e-38 Score=253.56 Aligned_cols=129 Identities=26% Similarity=0.454 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHhhccCcHHHHHHHHHHHHhchhchHHHHHHHHHHhccC--cccchhHHHHHhHHHHHHhhhc-ChhHHH
Q 046621 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSS--QKEQRVSFLYLANDILQNSRRK-GSEFVN 81 (213)
Q Consensus 5 ~F~~~~~~~kL~~L~~Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a--~~~~KL~lLYLaNDIlqnskrk-~~~f~~ 81 (213)
+||++.|.++|++||+||+||+++|.|||+|+++++.||++|.++|.++ ++++||++|||+|||+|||+++ +++|++
T Consensus 2 ~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~ 81 (142)
T 2km4_A 2 AFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQD 81 (142)
T ss_dssp CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHH
T ss_pred CCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHH
Confidence 7999999999999999999999999999999999999999999999986 6799999999999999999987 589999
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhhCcccCCCc-cchhhhhhCC
Q 046621 82 EFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG-QGLKDEMLGK 133 (213)
Q Consensus 82 ~F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWeeR~Vf~~~~-~~L~~~~lg~ 133 (213)
+|+++||++|.+++..+|++.+++|.|||+||++|+||++++ .+|+..+.|.
T Consensus 82 ~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~~ 134 (142)
T 2km4_A 82 SFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAAA 134 (142)
T ss_dssp HHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHhH
Confidence 999999999999999889999999999999999999999996 7788777663
No 2
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=100.00 E-value=2.3e-38 Score=249.24 Aligned_cols=134 Identities=46% Similarity=0.753 Sum_probs=122.3
Q ss_pred CCCCCHHHHHHHHhhccCcHHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcChhHHHH
Q 046621 3 NEAFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNE 82 (213)
Q Consensus 3 ~~~F~~~~~~~kL~~L~~Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~~~f~~~ 82 (213)
+++|+++.|.++|+.||+||+||++++.||++|+++++.||++|.++|.++++++||++|||+|||+|||++++++|+.+
T Consensus 1 ~ssf~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~ 80 (135)
T 4fu3_A 1 GSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTRE 80 (135)
T ss_dssp --CCCHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred CCCCCHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhhCcccCCCc-cchhhhhhCCCCC
Q 046621 83 FWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG-QGLKDEMLGKNPP 136 (213)
Q Consensus 83 F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWeeR~Vf~~~~-~~L~~~~lg~~p~ 136 (213)
|+++||.+|.+++..+++..+++|.|||++|++|+||++++ .+|+..+.+..||
T Consensus 81 f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~~~~~P 135 (135)
T 4fu3_A 81 FESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSP 135 (135)
T ss_dssp HHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCCCC
Confidence 99999999999998778889999999999999999999996 8888888776554
No 3
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=227.35 Aligned_cols=125 Identities=34% Similarity=0.576 Sum_probs=116.4
Q ss_pred CCCCHHHHHHHHhhccCcHHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcC-hhHHHH
Q 046621 4 EAFDGQILSEKLSKLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKG-SEFVNE 82 (213)
Q Consensus 4 ~~F~~~~~~~kL~~L~~Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~-~~f~~~ 82 (213)
++|.++.|.++|++||+||+||++++.||++|+++++.||++|.++|.++++++||++|||+|||+|||++++ +.|..+
T Consensus 3 ~~~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~ 82 (132)
T 4flb_A 3 AGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRES 82 (132)
T ss_dssp HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHH
T ss_pred chHHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999886 789999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhhCcccCCCc-cchhhhhh
Q 046621 83 FWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG-QGLKDEML 131 (213)
Q Consensus 83 F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWeeR~Vf~~~~-~~L~~~~l 131 (213)
|+++||.+|.+++ +++.++++.|||+||++|+||++++ .+|++.+-
T Consensus 83 f~~~l~~~~~~~~---~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~L~ 129 (132)
T 4flb_A 83 FADVLPEAAALVK---DPSVSKSVERIFKIWEDRNVYPEEMIVALREALS 129 (132)
T ss_dssp HHTTHHHHHHTTC---STTTHHHHHHHHHHHHHHTSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHh
Confidence 9999999999875 6788999999999999999999996 77776544
No 4
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.95 E-value=5.9e-28 Score=193.26 Aligned_cols=123 Identities=22% Similarity=0.345 Sum_probs=113.6
Q ss_pred HHHHHHHHhhc-----cCcHHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcCh----h
Q 046621 8 GQILSEKLSKL-----NNSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGS----E 78 (213)
Q Consensus 8 ~~~~~~kL~~L-----~~Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~~----~ 78 (213)
.+.|+.+|+.| ++|+.+|++++.||++|+++++.||++|.+++.++++++||++|||+|||+||+++++. +
T Consensus 4 v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~ 83 (145)
T 3d9j_A 4 VKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDV 83 (145)
T ss_dssp HHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCS
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCcccc
Confidence 47899999999 56899999999999999999999999999999999999999999999999999998743 7
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhhCcccCCCc-cchhhhhh
Q 046621 79 FVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG-QGLKDEML 131 (213)
Q Consensus 79 f~~~F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWeeR~Vf~~~~-~~L~~~~l 131 (213)
|...|+++||.+|.++|.. ++..+.++.||++||++|+||+++. ..+++.+.
T Consensus 84 f~~~F~~~L~~~f~~~~~~-~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 84 FAPRFSNNIISTFQNLYRC-PGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp HHHHHHHHHHHHHHHHTSS-CGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999965 5899999999999999999999996 66776554
No 5
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.94 E-value=1.2e-26 Score=185.51 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=112.7
Q ss_pred HHHHHHHhhcc-CcHHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcChhHHHHHHHHH
Q 046621 9 QILSEKLSKLN-NSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVL 87 (213)
Q Consensus 9 ~~~~~kL~~L~-~Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~~~f~~~F~~vL 87 (213)
+.|.++|+.|+ +|+.+|++++.||++|.++++.||++|.+++.++++.+||++|||+|||++|+ |.+|...|+++|
T Consensus 10 ~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~---g~~y~~~F~~~l 86 (144)
T 1sz9_A 10 KDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNV---GSPYTIYFSRNL 86 (144)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT---CTTHHHHHHTTH
T ss_pred HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhc---cchHHHHHHHHH
Confidence 67999999999 99999999999999999999999999999999999999999999999999995 467999999999
Q ss_pred HHHHHHHhhcCChHHHHhHHHHHHHhhhC-----cccCCCc-cchhhhhh
Q 046621 88 PAALKHVYDNGDEYGKKAVTRLVDIWEER-----KVFGSRG-QGLKDEML 131 (213)
Q Consensus 88 p~~~~~v~~~~d~~~~~kv~rll~IWeeR-----~Vf~~~~-~~L~~~~l 131 (213)
+.+|.++|..+|+.++.++.||+++|++| +||++++ ..++..+.
T Consensus 87 ~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 87 FNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLI 136 (144)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999997 66665544
No 6
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.1e-16 Score=125.02 Aligned_cols=122 Identities=16% Similarity=0.270 Sum_probs=108.0
Q ss_pred HHHHHHHHhhcc-----CcHHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhc----C--
Q 046621 8 GQILSEKLSKLN-----NSQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRK----G-- 76 (213)
Q Consensus 8 ~~~~~~kL~~L~-----~Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk----~-- 76 (213)
.+.|+.-|+.|. .|..-|.+++.||+.|.++++.||+.+.+++.++++.+||..|||+++|+.+++.+ |
T Consensus 3 v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~ 82 (157)
T 3clj_A 3 FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNS 82 (157)
T ss_dssp HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCc
Confidence 678999999883 68999999999999999999999999999999999999999999999999998841 1
Q ss_pred -----hhH---HHHHHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhhCcccCCCc-cchhhh
Q 046621 77 -----SEF---VNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSRG-QGLKDE 129 (213)
Q Consensus 77 -----~~f---~~~F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWeeR~Vf~~~~-~~L~~~ 129 (213)
..| +.-|...+|..+..++..+++..+.++.+||+||+.+++|++++ +.+++.
T Consensus 83 ~~a~~gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~ 144 (157)
T 3clj_A 83 SSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSK 144 (157)
T ss_dssp ---STTSHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 125 45678899999999998889999999999999999999999996 666654
No 7
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=94.41 E-value=0.46 Score=37.69 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=74.8
Q ss_pred CCHHHHHHHHhhccCc------HHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhc-C--
Q 046621 6 FDGQILSEKLSKLNNS------QQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRK-G-- 76 (213)
Q Consensus 6 F~~~~~~~kL~~L~~S------q~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk-~-- 76 (213)
|....|.+.+.+.++. =..|-.+..-+-.....+++.+.++.+.|..-.+...+.-|-|++-+++||-.. .
T Consensus 11 ~~~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 11 FTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CCCCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5555566666666642 345555666665656678999999999998766777788899999999997533 1
Q ss_pred ---hhHHHHHHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhhCcccCCC
Q 046621 77 ---SEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSR 122 (213)
Q Consensus 77 ---~~f~~~F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWeeR~Vf~~~ 122 (213)
.+|.+++.+++ ....++.+++++..++.-|.+ -|..+
T Consensus 91 vas~~Fl~el~~l~-------~~~~~~~Vk~kil~li~~W~~--~f~~~ 130 (163)
T 1x5b_A 91 VCSRDFATEVRAVI-------KNKAHPKVCEKLKSLMVEWSE--EFQKD 130 (163)
T ss_dssp HTSHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHH--HTTTC
T ss_pred HhhHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHH--HhcCC
Confidence 24444443322 233578999999999999996 45543
No 8
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=91.65 E-value=2.5 Score=32.45 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhc-----C-hhHHHHHHHHHHHHHHHHhh
Q 046621 23 QSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRK-----G-SEFVNEFWKVLPAALKHVYD 96 (213)
Q Consensus 23 ~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk-----~-~~f~~~F~~vLp~~~~~v~~ 96 (213)
+.|-.+..-+-.....+++.+..+.+.|....+...+.-|-|+.-+++||-.. + .+|.+++...++
T Consensus 24 ~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~-------- 95 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLN-------- 95 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhc--------
Confidence 45555656555555678999999999998766666777788999999997532 1 345555544332
Q ss_pred cCChHHHHhHHHHHHHhhh
Q 046621 97 NGDEYGKKAVTRLVDIWEE 115 (213)
Q Consensus 97 ~~d~~~~~kv~rll~IWee 115 (213)
..++.+++++..++.-|.+
T Consensus 96 ~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 96 KGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 2478999999999999996
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=90.48 E-value=1.9 Score=35.44 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=71.8
Q ss_pred HHHHHhhccC------cHHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhc-----C-hh
Q 046621 11 LSEKLSKLNN------SQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRK-----G-SE 78 (213)
Q Consensus 11 ~~~kL~~L~~------Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk-----~-~~ 78 (213)
|.+.+.+.++ -=..|-.+..-+-.....+++.+..+.+.|...++...+.-|.|++-++.||-.. + .+
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~ 85 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE 85 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH
Confidence 5555655553 2344556666666556688999999999998777777788899999999997532 1 34
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhhCcccCC
Q 046621 79 FVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGS 121 (213)
Q Consensus 79 f~~~F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWeeR~Vf~~ 121 (213)
|.+++...+. ...++.+++++..++.-|.+- |..
T Consensus 86 fl~~l~~l~~-------~~~~~~Vk~kil~li~~W~~~--f~~ 119 (220)
T 1dvp_A 86 NCEMFSSFLE-------STPHENVRQKMLELVQTWAYA--FRS 119 (220)
T ss_dssp HHHHHHHHHH-------HCSCHHHHHHHHHHHHHHHHH--TTT
T ss_pred HHHHHHHHhc-------CCCcHHHHHHHHHHHHHHHHH--hcc
Confidence 5555544332 234789999999999999964 554
No 10
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=90.48 E-value=2.1 Score=35.47 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=74.0
Q ss_pred HHHHHHhhccC------cHHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhc-----C-h
Q 046621 10 ILSEKLSKLNN------SQQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRK-----G-S 77 (213)
Q Consensus 10 ~~~~kL~~L~~------Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk-----~-~ 77 (213)
.|++.+.+.++ --+.|-.+..-+-.....+++.+..+.+.|...++...|.-|-|+.-+++||-.. . .
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~ 87 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK 87 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH
Confidence 55566665553 2356677777776666678999999999998767777777788999999997743 1 2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhhCcccCCC
Q 046621 78 EFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGSR 122 (213)
Q Consensus 78 ~f~~~F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWeeR~Vf~~~ 122 (213)
+|.+++...+ -...++.+++++..+|.-|.+ -|..+
T Consensus 88 ~fl~~l~~l~-------~~~~~~~Vk~kil~li~~W~~--~f~~~ 123 (226)
T 3zyq_A 88 QTMEELKDLL-------KRQVEVNVRNKILYLIQAWAH--AFRNE 123 (226)
T ss_dssp HHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHH--HTTTC
T ss_pred HHHHHHHHHh-------ccCCCHHHHHHHHHHHHHHHH--HhCCC
Confidence 4555444332 234578999999999999996 35443
No 11
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=89.66 E-value=2.5 Score=32.88 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcChhHHHHH--HHHHHHHHHHHhh----
Q 046621 23 QSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEF--WKVLPAALKHVYD---- 96 (213)
Q Consensus 23 ~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~~~f~~~F--~~vLp~~~~~v~~---- 96 (213)
+.|-.+..-+-.....++..+..+.+.|...++...+.-|-|++-+++||-. .|..++ ..+|..+...+..
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~---~fh~evas~~Fl~eL~kl~~~k~~~ 96 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGE---KFHSEVAKFRFLNELIKVLSPKYLG 96 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH---HHHHHHTSHHHHHHHHHTTCCSTTS
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH---HHHHHHhhHHHHHHHHHHHccccCC
Confidence 4455666666565667899999999999877777778888999999999643 343333 2244443333321
Q ss_pred -cCChHHHHhHHHHHHHhhhCcccCCC
Q 046621 97 -NGDEYGKKAVTRLVDIWEERKVFGSR 122 (213)
Q Consensus 97 -~~d~~~~~kv~rll~IWeeR~Vf~~~ 122 (213)
..++.+++++..++.-|.+. |..+
T Consensus 97 ~~~~~~Vk~kil~li~~W~~~--f~~~ 121 (148)
T 1mhq_A 97 SWATGKVKGRVIEILFSWTVW--FPED 121 (148)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--CTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHH--cCCC
Confidence 23789999999999999964 6654
No 12
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=89.53 E-value=2.8 Score=32.64 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=68.6
Q ss_pred HHHHHHhhccC---c---HHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcChhHHHHH
Q 046621 10 ILSEKLSKLNN---S---QQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEF 83 (213)
Q Consensus 10 ~~~~kL~~L~~---S---q~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~~~f~~~F 83 (213)
.|.+.+.+.++ + =+.|-.+..-+-.....++..+..+.+.+...++...+.-|-|+.-+++||-. .|..++
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~---~fh~ei 87 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK---RFHDEV 87 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH---HHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH---HHHHHH
Confidence 34555555543 2 23555555555555556889999999999876666677778899999999753 332322
Q ss_pred --HHHHHHHHHHHhh-----cCChHHHHhHHHHHHHhhhCcccCC
Q 046621 84 --WKVLPAALKHVYD-----NGDEYGKKAVTRLVDIWEERKVFGS 121 (213)
Q Consensus 84 --~~vLp~~~~~v~~-----~~d~~~~~kv~rll~IWeeR~Vf~~ 121 (213)
..+|..+++.+.. ..++.+++++..++.-|.+ -|+.
T Consensus 88 as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~--~f~~ 130 (149)
T 3g2s_A 88 GKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV--GLPE 130 (149)
T ss_dssp TSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH--HCTT
T ss_pred hhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH--HhCC
Confidence 1133333333321 2478999999999999996 3554
No 13
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=88.65 E-value=3.5 Score=32.78 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=71.9
Q ss_pred HHHHHHhhccCc------HHHHHHHHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhc-C-----h
Q 046621 10 ILSEKLSKLNNS------QQSIESLSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRK-G-----S 77 (213)
Q Consensus 10 ~~~~kL~~L~~S------q~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk-~-----~ 77 (213)
.|.+.+.+.++. =..|-.+..-+-.....+++.+..+.+.+...++...+.-|-|+.-+++||-.. . .
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~ 92 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF 92 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 466666666642 345556666666666678899999999998767777788889999999997533 1 2
Q ss_pred hHHHHHHHHHHHHHHHHh--hcCChHHHHhHHHHHHHhhhCcccCCC
Q 046621 78 EFVNEFWKVLPAALKHVY--DNGDEYGKKAVTRLVDIWEERKVFGSR 122 (213)
Q Consensus 78 ~f~~~F~~vLp~~~~~v~--~~~d~~~~~kv~rll~IWeeR~Vf~~~ 122 (213)
+|.+++... +..-+ ...++.+++++..+|.-|.+- |..+
T Consensus 93 ~Fl~eL~kl----~~~k~~~~~~~~~Vk~kil~li~~W~~~--f~~~ 133 (171)
T 1juq_A 93 RFLNELIKV----VSPKYLGDRVSEKVKTKVIELLYSWTMA--LPEE 133 (171)
T ss_dssp HHHHHHHHH----HCCCCCCTTSCHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHH----hccccCCCCCCHHHHHHHHHHHHHHHHH--cCCC
Confidence 344443332 21111 123679999999999999964 6654
No 14
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=86.50 E-value=5.3 Score=31.16 Aligned_cols=109 Identities=9% Similarity=0.139 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHhhccC------cHHHHHHHHHHHHhchhchHHHHHHHHHHhcc-CcccchhHHHHHhHHHHHHhhhc
Q 046621 3 NEAFDGQILSEKLSKLNN------SQQSIESLSRWCITHRKKAKQIVETWDKSFNS-SQKEQRVSFLYLANDILQNSRRK 75 (213)
Q Consensus 3 ~~~F~~~~~~~kL~~L~~------Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~-a~~~~KL~lLYLaNDIlqnskrk 75 (213)
.++|+. .+...+.+.++ -=..|-.+..-+-.....+++.+..+.+.|.. .++...+.-|-|++-+++||-
T Consensus 10 ~~p~~s-~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG-- 86 (157)
T 1elk_A 10 GNPFSS-PVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG-- 86 (157)
T ss_dssp SCGGGS-HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC--
T ss_pred CCCCCc-HHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC--
Confidence 445542 25555655554 23455566665555556789999999999973 455566777889999999974
Q ss_pred ChhHHHHHH--HHHHH-HHHHHhhc--CChHHHHhHHHHHHHhhh
Q 046621 76 GSEFVNEFW--KVLPA-ALKHVYDN--GDEYGKKAVTRLVDIWEE 115 (213)
Q Consensus 76 ~~~f~~~F~--~vLp~-~~~~v~~~--~d~~~~~kv~rll~IWee 115 (213)
..|..++. .+|.+ +++.+... .+..+++++..++.-|.+
T Consensus 87 -~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 87 -HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp -HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 23333332 13333 23333222 245889999999999997
No 15
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=83.65 E-value=0.29 Score=38.73 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=26.5
Q ss_pred hcccCCChHHHHHHHHHHHhhCCChHHHHHHhH
Q 046621 162 KLAVGALPEKILTAFQSVLDEHPNEEVALNNCN 194 (213)
Q Consensus 162 ~~~~~~~~eki~~~~~~~~~~~~~e~~~~~k~~ 194 (213)
+.+.++.++.++.+.+++.+.+++|.++|+++.
T Consensus 17 ~~~~p~~~~elik~L~~le~sassDa~vrq~Ia 49 (152)
T 4fla_A 17 QGAGPLLTEELIKALQDLENAASGDATVRQKIA 49 (152)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhhccccchHHHHHHHH
Confidence 455678999999999999999999999999998
No 16
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=67.75 E-value=25 Score=27.23 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHhhccC------cHHHHHHHHHHHHhchhchHHHHHHHHHHhccC-cccchhHHHHHhHHHHHHhhhc
Q 046621 3 NEAFDGQILSEKLSKLNN------SQQSIESLSRWCITHRKKAKQIVETWDKSFNSS-QKEQRVSFLYLANDILQNSRRK 75 (213)
Q Consensus 3 ~~~F~~~~~~~kL~~L~~------Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~~a-~~~~KL~lLYLaNDIlqnskrk 75 (213)
.++|+. .|.+.+.+.++ -=+.|-.+..-+-.....+++.+..+.+.|... +....+.-|-|+.-+++||-
T Consensus 10 ~~~~~t-~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG-- 86 (152)
T 3rru_A 10 HDPYAT-SVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCG-- 86 (152)
T ss_dssp -CGGGS-HHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSC--
T ss_pred CCCCCC-hHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcC--
Confidence 456663 23344444432 234566666666666678899999999999742 33323444678888888854
Q ss_pred ChhHHHHHH--HHHHHH-HHHHhh--cCChHHHHhHHHHHHHhhhCcccCC
Q 046621 76 GSEFVNEFW--KVLPAA-LKHVYD--NGDEYGKKAVTRLVDIWEERKVFGS 121 (213)
Q Consensus 76 ~~~f~~~F~--~vLp~~-~~~v~~--~~d~~~~~kv~rll~IWeeR~Vf~~ 121 (213)
..|-.++. .+|.++ .+.+.. ..+..+++++..++.-|.+ -|..
T Consensus 87 -~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~--~F~~ 134 (152)
T 3rru_A 87 -PSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ--GFPG 134 (152)
T ss_dssp -HHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT--CCSS
T ss_pred -HHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH--HhCC
Confidence 44544443 234332 222211 2245799999999999996 4554
No 17
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=66.62 E-value=18 Score=32.66 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=64.5
Q ss_pred HHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcChhHHHHHHHHHHHHHHHHhhcCChHHHHhHHH
Q 046621 29 SRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTR 108 (213)
Q Consensus 29 s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~~~f~~~F~~vLp~~~~~v~~~~d~~~~~kv~r 108 (213)
.+++-...+-+..++..+.++--.+...+.+.+|+.+.+|+... .+ .+|.++++.+|..+..+.+...-+...|
T Consensus 284 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~---~~---~~f~~i~~~lF~~la~ci~S~hfqVAEr 357 (392)
T 2jak_A 284 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVI---EP---SEFVKIMEPLFRQLAKCVSSPHFQVAER 357 (392)
T ss_dssp HHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTC---CH---HHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhC---CH---HHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 44555556666777777777766777788899999999999762 33 5788888999988887766666788899
Q ss_pred HHHHhhhCccc
Q 046621 109 LVDIWEERKVF 119 (213)
Q Consensus 109 ll~IWeeR~Vf 119 (213)
.+.+|....+.
T Consensus 358 AL~~wnNe~i~ 368 (392)
T 2jak_A 358 ALYYWNNEYIM 368 (392)
T ss_dssp HHGGGGCHHHH
T ss_pred HHHHhCcHHHH
Confidence 99999865544
No 18
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=52.59 E-value=22 Score=24.89 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=39.8
Q ss_pred CCHHHHHHHHh--hccCcHHHHHHHHHHHHhchhchHHHHHHHHHHhc
Q 046621 6 FDGQILSEKLS--KLNNSQQSIESLSRWCITHRKKAKQIVETWDKSFN 51 (213)
Q Consensus 6 F~~~~~~~kL~--~L~~Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l~ 51 (213)
=|.+.|.+-|. .++.+.+-|..|..-|+.|+..+..+|.-|.-+-.
T Consensus 3 vs~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~ 50 (78)
T 4e2i_2 3 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCT 50 (78)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHH
T ss_pred cCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46788888888 55688899999999999999999999999987643
No 19
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=52.03 E-value=33 Score=31.00 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=64.8
Q ss_pred HHHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcChhHHHHHHHHHHHHHHHHhhcCChHHHHhHH
Q 046621 28 LSRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVT 107 (213)
Q Consensus 28 ~s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~~~f~~~F~~vLp~~~~~v~~~~d~~~~~kv~ 107 (213)
+.+++-....-+..++..+.++--.+...+.+.+|+.+.+|+.. -.+ ..|.++++.+|..+..+.+...-+...
T Consensus 238 v~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~---~~~---~~f~~i~~~lf~~la~ci~S~hfqVAE 311 (403)
T 3fga_B 238 VVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDV---IEP---SEFVKIMEPLFRQLAKCVSSPHFQVAE 311 (403)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTT---CCH---HHHHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHh---CCH---HHHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 34555555666677777777776677788889999999999964 222 578889999999888765555678888
Q ss_pred HHHHHhhhCcccC
Q 046621 108 RLVDIWEERKVFG 120 (213)
Q Consensus 108 rll~IWeeR~Vf~ 120 (213)
|-+.+|....+.+
T Consensus 312 rAL~~wnNe~i~~ 324 (403)
T 3fga_B 312 RALYYWNNEYIMS 324 (403)
T ss_dssp HHHGGGGCHHHHH
T ss_pred HHHHHhccHHHHH
Confidence 9999998655543
No 20
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=51.69 E-value=32 Score=31.45 Aligned_cols=85 Identities=14% Similarity=0.224 Sum_probs=64.2
Q ss_pred HHHHHhchhchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcChhHHHHHHHHHHHHHHHHhhcCChHHHHhHHH
Q 046621 29 SRWCITHRKKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPAALKHVYDNGDEYGKKAVTR 108 (213)
Q Consensus 29 s~W~l~h~~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~~~f~~~F~~vLp~~~~~v~~~~d~~~~~kv~r 108 (213)
.+++-....-+..++..+.++--.+...+.+.+|..+.+|+.. -.+ .+|.++++.+|..+..+.+...-+...|
T Consensus 272 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~---~~~---~ef~~i~~~lF~~la~ci~S~hfqVAEr 345 (449)
T 2npp_B 272 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDV---IEP---SEFVKIMEPLFRQLAKCVSSPHFQVAER 345 (449)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTT---CCH---HHHHHHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred HHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHh---CCH---HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4455555666677777777766667777889999999999964 233 4678889999999887766667788899
Q ss_pred HHHHhhhCccc
Q 046621 109 LVDIWEERKVF 119 (213)
Q Consensus 109 ll~IWeeR~Vf 119 (213)
-+.+|....+.
T Consensus 346 AL~~w~N~~i~ 356 (449)
T 2npp_B 346 ALYYWNNEYIM 356 (449)
T ss_dssp HHGGGGCHHHH
T ss_pred HHHHHCCHHHH
Confidence 99999977654
No 21
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=44.01 E-value=1.3e+02 Score=24.36 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=69.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHH----HHhch------hchHHHHHHHHHHhccCcccchhHHHHHhHHHHHHhhhcCh
Q 046621 8 GQILSEKLSKLNNSQQSIESLSRW----CITHR------KKAKQIVETWDKSFNSSQKEQRVSFLYLANDILQNSRRKGS 77 (213)
Q Consensus 8 ~~~~~~kL~~L~~Sq~SIqs~s~W----~l~h~------~~a~~Iv~~w~~~l~~a~~~~KL~lLYLaNDIlqnskrk~~ 77 (213)
...+-..|..+......+++.... ++.+. .+-+.+++.+...+....+.-|...+..+..++..+.....
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence 456667778887765555443333 34444 22557888888888766677888889999999988654324
Q ss_pred hHHHHH-HHHHHHHHHHHhhcCChHHHHhHHHHHHHhhhCcccCC
Q 046621 78 EFVNEF-WKVLPAALKHVYDNGDEYGKKAVTRLVDIWEERKVFGS 121 (213)
Q Consensus 78 ~f~~~F-~~vLp~~~~~v~~~~d~~~~~kv~rll~IWeeR~Vf~~ 121 (213)
.|...| ...+|.+... ....++.+|..-..++..=- +++|.
T Consensus 183 ~l~~~l~~~iip~l~~~-l~D~~~~VR~aA~~~l~~i~--~~vG~ 224 (249)
T 2qk1_A 183 TLQRYLKDEVVPIVIQI-VNDTQPAIRTIGFESFAILI--KIFGM 224 (249)
T ss_dssp HHHHHHTTTHHHHHHHH-HTCSSHHHHHHHHHHHHHHH--HHHCS
T ss_pred hHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHH--HHhCH
Confidence 566666 5566644443 44457778877666665533 34444
No 22
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=39.23 E-value=25 Score=20.81 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=18.6
Q ss_pred HHHHHHHHhhcCChHHHHhHHH
Q 046621 87 LPAALKHVYDNGDEYGKKAVTR 108 (213)
Q Consensus 87 Lp~~~~~v~~~~d~~~~~kv~r 108 (213)
|-.+|+.+|..+|++.+..+.+
T Consensus 8 l~~~fk~iY~~gddd~kram~K 29 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINK 29 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 5678899999999999888765
No 23
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP: a.286.1.1
Probab=38.58 E-value=66 Score=24.81 Aligned_cols=56 Identities=23% Similarity=0.213 Sum_probs=37.1
Q ss_pred cchhHHHHHhHHHHHHhhhc----------C----hhHHHHHHHHHHHHHHHHhhc-----CChHHHHhHHHHHH
Q 046621 56 EQRVSFLYLANDILQNSRRK----------G----SEFVNEFWKVLPAALKHVYDN-----GDEYGKKAVTRLVD 111 (213)
Q Consensus 56 ~~KL~lLYLaNDIlqnskrk----------~----~~f~~~F~~vLp~~~~~v~~~-----~d~~~~~kv~rll~ 111 (213)
.-.-|-||++|..+|-|+-. + .+|...|-+++-..++...+. .|+..+..+..|+.
T Consensus 70 ~eqFHgfyianawvqlsrVaQ~iaE~~d~d~e~~~~EY~~l~~rv~~~~lKe~vKkLKKARtdr~m~nsfk~V~~ 144 (145)
T 2pv4_A 70 RCVFHGFYLANAWIQLSIVARDISELQDTDEAIAEQEYSGLYVRVAEAALKESVKKLKKARTDRSMYNSMREVMG 144 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHTTTTSCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhc
Confidence 35688999999999977732 1 257777777666655554431 36666666665554
No 24
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=37.03 E-value=91 Score=22.73 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=38.5
Q ss_pred CCHHHHHHHHh--hccCcHHHHHHHHHHHHhchhchHHHHHHHHHHh
Q 046621 6 FDGQILSEKLS--KLNNSQQSIESLSRWCITHRKKAKQIVETWDKSF 50 (213)
Q Consensus 6 F~~~~~~~kL~--~L~~Sq~SIqs~s~W~l~h~~~a~~Iv~~w~~~l 50 (213)
=|.+.+.+-|+ .++.+-+-|..|..-|+.|+-.+..+|..|+-+-
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFs 72 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFC 72 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35678888888 4567889999999999999999999999999773
No 25
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=35.63 E-value=22 Score=26.46 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhh
Q 046621 77 SEFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEE 115 (213)
Q Consensus 77 ~~f~~~F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWee 115 (213)
+.-..+|..+||+++..-+..+.+..+..+.+|++.-.+
T Consensus 37 tpegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~ 75 (112)
T 1k19_A 37 SPEGKELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIK 75 (112)
T ss_dssp HHHHHHHHHHHHHHTTTTCTTSCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 466788999999999999988899999999999876553
No 26
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=35.14 E-value=26 Score=25.92 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHHhHHHHHHHhhh
Q 046621 78 EFVNEFWKVLPAALKHVYDNGDEYGKKAVTRLVDIWEE 115 (213)
Q Consensus 78 ~f~~~F~~vLp~~~~~v~~~~d~~~~~kv~rll~IWee 115 (213)
.-..+|..+||+++..-+..+.+..+..+.+|++.-.+
T Consensus 40 pegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~ 77 (109)
T 2gvs_A 40 ADGKELKSVIPDALSNECAKCNEKQKEGTKKVLKHLIN 77 (109)
T ss_dssp TTHHHHHHHTTHHHHSTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 55788999999999999998899999999999876543
No 27
>1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} SCOP: a.29.10.1
Probab=25.71 E-value=2.1e+02 Score=21.25 Aligned_cols=51 Identities=25% Similarity=0.261 Sum_probs=36.3
Q ss_pred HHHhHHHHHHhhhcC--hhHHHHHHHHHHHHHHHHhhcCChHH----HHhHHHHHHH
Q 046621 62 LYLANDILQNSRRKG--SEFVNEFWKVLPAALKHVYDNGDEYG----KKAVTRLVDI 112 (213)
Q Consensus 62 LYLaNDIlqnskrk~--~~f~~~F~~vLp~~~~~v~~~~d~~~----~~kv~rll~I 112 (213)
+-+|.|.|+.|+..- ..|.-+....|...+..++...++.. .+-|.+++-|
T Consensus 46 iElARDCL~KSr~~LITsrYF~El~E~LEkLl~ea~erSes~~~~~v~~lvkKlLiI 102 (114)
T 1v9v_A 46 VELARDCLAKSGENLVTSRYFLEMQEKLERLLQDAHERSDSEEVSFIVQLVRKLLII 102 (114)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHHh
Confidence 569999999999763 56878888889989988887655332 3444444433
No 28
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=24.07 E-value=1.5e+02 Score=21.54 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=29.6
Q ss_pred ChHHHHHHH-HHHHhhCCChHHHHHHhHHHHHHHhhhhhh
Q 046621 168 LPEKILTAF-QSVLDEHPNEEVALNNCNAAVHHAGKVSED 206 (213)
Q Consensus 168 ~~eki~~~~-~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~ 206 (213)
...+|.++= ..+-=.+++++.++++|+.=...|.++|.|
T Consensus 25 eKkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeE 64 (106)
T 1j1d_B 25 KKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAE 64 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 345566554 445557789999999999988888888876
No 29
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=22.75 E-value=56 Score=22.15 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=13.9
Q ss_pred ChHHHHHHhHHHHHHHhh
Q 046621 185 NEEVALNNCNAAVHHAGK 202 (213)
Q Consensus 185 ~e~~~~~k~~~~~~~~~~ 202 (213)
|=+..+++|+..|.+|+.
T Consensus 30 diEqeLe~Ck~sIrrLE~ 47 (72)
T 1k1f_A 30 DIEQELERAKASIRRLEQ 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346789999999887763
No 30
>3ajf_A Non-structural protein 3; RNA silencing suppression, negative strand RNA virus, viral; 2.00A {Rice hoja blanca virus}
Probab=21.56 E-value=1.9e+02 Score=20.41 Aligned_cols=49 Identities=16% Similarity=0.409 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHhhccCc--HHHHHHHHHHHHhchhc--------hHHHHHHHHHHhcc
Q 046621 4 EAFDGQILSEKLSKLNNS--QQSIESLSRWCITHRKK--------AKQIVETWDKSFNS 52 (213)
Q Consensus 4 ~~F~~~~~~~kL~~L~~S--q~SIqs~s~W~l~h~~~--------a~~Iv~~w~~~l~~ 52 (213)
-.|++-.|.++|.+=+.. =.+--...-|+++|.+. ...+|..+.++|..
T Consensus 32 Ps~deH~FL~ml~~PDd~e~Ls~FLkt~IWiLsHdrdlP~~yRlP~t~lvS~y~k~f~e 90 (94)
T 3ajf_A 32 PSFDEHMFLQMIRKPDDPENLSVFLKSAIWMLSHKRDLPGHYRLPLTCLVSTYSEYFVE 90 (94)
T ss_dssp TTSCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTCTTCCGGGHHHHHHHHHHHHGGGGT
T ss_pred CCcchHHHHHHhcCCCcHHHHHHHHHHHHHHhhcCCCCCccccccHHHHHHHHHHHhhc
Confidence 368899999999987753 33444556799999773 34466666666654
No 31
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.17 E-value=90 Score=18.82 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHhhccCcHHHHHHHHHHHHhc
Q 046621 5 AFDGQILSEKLSKLNNSQQSIESLSRWCITH 35 (213)
Q Consensus 5 ~F~~~~~~~kL~~L~~Sq~SIqs~s~W~l~h 35 (213)
.|+++....-|..-+ .++....|++.|
T Consensus 20 GF~~~~a~~AL~~~~----n~e~A~~~L~~h 46 (47)
T 2ekk_A 20 GFTREHAMEALLNTS----TMEQATEYLLTH 46 (47)
T ss_dssp HCCHHHHHHHHHHSC----SHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHcC----CHHHHHHHHHcC
Confidence 377777776666642 588888898877
Done!