Query 046622
Match_columns 72
No_of_seqs 114 out of 140
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 02:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0700 Protein phosphatase 2C 98.0 4.8E-06 1E-10 66.2 2.6 27 2-28 364-390 (390)
2 PLN03145 Protein phosphatase 2 91.5 0.31 6.7E-06 37.8 4.1 13 39-51 319-331 (365)
3 cd00143 PP2Cc Serine/threonine 90.1 0.34 7.3E-06 32.4 2.8 12 38-49 243-254 (254)
4 PF07228 SpoIIE: Stage II spor 88.0 1.3 2.8E-05 28.9 4.4 13 37-49 180-192 (193)
5 PF14542 Acetyltransf_CG: GCN5 86.1 0.83 1.8E-05 28.0 2.5 18 2-19 37-54 (78)
6 smart00332 PP2Cc Serine/threon 81.6 1.6 3.5E-05 29.4 2.7 11 37-47 245-255 (255)
7 COG2388 Predicted acetyltransf 80.7 1.5 3.2E-05 29.0 2.1 20 2-22 54-73 (99)
8 PTZ00224 protein phosphatase 2 78.4 1.6 3.6E-05 34.1 2.2 13 39-51 260-272 (381)
9 PF00583 Acetyltransf_1: Acety 75.5 3.7 7.9E-05 22.9 2.6 19 2-21 40-58 (83)
10 PF13673 Acetyltransf_10: Acet 74.3 2.6 5.5E-05 25.0 1.8 20 2-23 79-98 (117)
11 KOG0698 Serine/threonine prote 72.6 2.6 5.7E-05 31.7 1.9 17 37-53 291-307 (330)
12 smart00099 btg1 tob/btg1 famil 68.2 8 0.00017 26.2 3.3 32 10-51 67-98 (108)
13 PF13527 Acetyltransf_9: Acety 66.6 6.8 0.00015 23.7 2.5 21 2-23 87-107 (127)
14 TIGR02865 spore_II_E stage II 66.3 6.4 0.00014 33.4 3.0 13 37-49 751-763 (764)
15 PLN03030 cationic peroxidase; 66.0 13 0.00029 29.1 4.5 54 5-69 37-96 (324)
16 cd04301 NAT_SF N-Acyltransfera 65.0 12 0.00026 18.4 2.9 20 2-22 40-59 (65)
17 COG0454 WecD Histone acetyltra 64.3 8.7 0.00019 19.5 2.3 21 2-23 96-116 (156)
18 KOG3139 N-acetyltransferase [G 63.6 6.6 0.00014 28.6 2.3 19 2-21 99-117 (165)
19 cd01760 RBD Ubiquitin-like dom 63.1 8.9 0.00019 23.8 2.6 20 8-27 21-40 (72)
20 cd01817 RGS12_RBD Ubiquitin do 62.0 9.1 0.0002 24.4 2.5 20 8-27 21-40 (73)
21 COG2208 RsbU Serine phosphatas 59.1 7.6 0.00016 29.1 2.0 15 36-50 352-366 (367)
22 PLN02706 glucosamine 6-phospha 58.7 14 0.0003 23.2 2.9 20 2-22 100-119 (150)
23 PF01402 RHH_1: Ribbon-helix-h 58.7 13 0.00028 19.3 2.4 21 9-29 10-30 (39)
24 PHA01807 hypothetical protein 58.7 13 0.00027 25.5 2.9 20 2-22 96-115 (153)
25 COG1551 CsrA RNA-binding globa 58.7 6.9 0.00015 25.3 1.5 22 37-58 13-34 (73)
26 PF13560 HTH_31: Helix-turn-he 57.4 7.8 0.00017 22.1 1.5 24 13-36 17-40 (64)
27 COG0631 PTC1 Serine/threonine 55.5 21 0.00045 26.1 3.8 18 36-53 238-255 (262)
28 PF05534 HicB: HicB family; I 54.0 18 0.00039 20.9 2.7 20 9-28 28-47 (51)
29 TIGR00853 pts-lac PTS system, 53.4 15 0.00032 23.3 2.4 23 2-24 12-34 (95)
30 PF02196 RBD: Raf-like Ras-bin 52.2 8.3 0.00018 23.4 1.1 18 9-26 23-40 (71)
31 TIGR00829 FRU PTS system, fruc 51.2 16 0.00036 22.9 2.4 24 2-25 8-32 (85)
32 PRK14559 putative protein seri 51.1 27 0.00058 29.6 4.2 14 38-51 623-636 (645)
33 PRK10314 putative acyltransfer 51.0 22 0.00047 23.6 3.0 20 2-21 89-108 (153)
34 smart00455 RBD Raf-like Ras-bi 50.8 19 0.00042 21.9 2.6 19 9-27 22-40 (70)
35 TIGR02382 wecD_rffC TDP-D-fuco 49.1 23 0.00049 23.8 2.9 21 2-23 138-158 (191)
36 PF07742 BTG: BTG family; Int 48.7 25 0.00054 23.7 3.1 32 10-51 69-100 (118)
37 PF07137 VDE: Violaxanthin de- 48.1 9.7 0.00021 28.5 1.1 21 11-31 165-185 (198)
38 COG0456 RimI Acetyltransferase 47.8 20 0.00043 22.7 2.4 19 2-20 106-124 (177)
39 PRK10783 mltD membrane-bound l 47.0 18 0.00038 29.1 2.5 25 13-37 274-298 (456)
40 cd05564 PTS_IIB_chitobiose_lic 45.8 22 0.00047 22.4 2.3 23 2-24 8-30 (96)
41 PF05225 HTH_psq: helix-turn-h 45.7 16 0.00035 20.4 1.6 19 13-31 19-37 (45)
42 PF02042 RWP-RK: RWP-RK domain 45.0 17 0.00038 21.6 1.7 18 13-30 18-35 (52)
43 PRK09491 rimI ribosomal-protei 43.8 33 0.00071 21.4 2.9 20 2-22 78-97 (146)
44 TIGR03330 SAM_DCase_Bsu S-aden 43.1 26 0.00055 23.1 2.4 39 7-51 23-62 (112)
45 TIGR00013 taut 4-oxalocrotonat 42.3 62 0.0013 18.0 4.1 38 6-58 18-55 (63)
46 PF14804 Jag_N: Jag N-terminus 41.3 25 0.00053 20.6 1.9 19 9-27 7-25 (52)
47 PF13542 HTH_Tnp_ISL3: Helix-t 40.4 27 0.0006 18.8 1.9 26 5-30 21-47 (52)
48 PF10522 RII_binding_1: RII bi 40.0 30 0.00065 16.9 1.8 13 4-16 5-17 (18)
49 PTZ00330 acetyltransferase; Pr 40.0 33 0.00071 21.0 2.4 17 2-18 97-113 (147)
50 PF13880 Acetyltransf_13: ESCO 39.6 25 0.00054 22.0 1.8 14 2-15 20-33 (70)
51 cd00390 Urease_gamma Urease ga 39.2 41 0.00089 22.6 2.9 28 5-33 32-59 (96)
52 PRK10140 putative acetyltransf 38.9 42 0.00092 20.7 2.8 20 2-21 93-112 (162)
53 PF01476 LysM: LysM domain; I 38.4 33 0.00071 17.7 2.0 21 13-33 9-29 (44)
54 PRK13242 ureA urease subunit g 38.2 42 0.00092 22.8 2.9 46 5-51 35-89 (100)
55 PRK07757 acetyltransferase; Pr 37.3 38 0.00082 21.2 2.5 20 2-22 80-99 (152)
56 COG1445 FrwB Phosphotransferas 37.1 43 0.00093 23.3 2.9 21 2-22 12-33 (122)
57 PRK10146 aminoalkylphosphonic 36.9 39 0.00085 20.6 2.4 20 2-22 91-110 (144)
58 TIGR03070 couple_hipB transcri 36.8 35 0.00075 18.0 2.0 23 13-35 18-40 (58)
59 TIGR03829 YokU_near_AblA uncha 36.2 13 0.00029 24.4 0.2 21 20-40 68-88 (89)
60 KOG3437 Anaphase-promoting com 35.9 34 0.00075 25.4 2.4 30 39-70 68-97 (184)
61 PRK09590 celB cellobiose phosp 35.4 42 0.00091 21.9 2.5 23 2-24 10-32 (104)
62 PRK10427 putative PTS system f 35.2 39 0.00085 22.4 2.4 24 2-25 13-37 (114)
63 TIGR00193 urease_gam urease, g 35.2 52 0.0011 22.4 3.0 46 5-51 35-89 (102)
64 PRK10975 TDP-fucosamine acetyl 34.8 51 0.0011 22.0 2.9 19 2-21 141-159 (194)
65 PRK01236 S-adenosylmethionine 34.7 48 0.001 22.7 2.8 40 7-52 25-65 (131)
66 PF04405 ScdA_N: Domain of Unk 34.2 38 0.00083 20.0 2.0 19 11-29 32-50 (56)
67 cd05569 PTS_IIB_fructose PTS_I 34.0 43 0.00094 21.0 2.3 23 2-24 9-32 (96)
68 COG3114 CcmD Heme exporter pro 33.6 39 0.00084 21.6 2.0 21 1-21 45-65 (67)
69 PRK02220 4-oxalocrotonate taut 33.5 89 0.0019 17.3 3.9 20 39-58 36-55 (61)
70 TIGR01575 rimI ribosomal-prote 33.3 43 0.00094 19.6 2.1 19 2-21 69-87 (131)
71 PF14026 DUF4242: Protein of u 32.9 27 0.0006 21.5 1.3 19 10-28 57-75 (77)
72 COG3153 Predicted acetyltransf 32.7 42 0.0009 24.0 2.3 18 2-19 90-107 (171)
73 PF13508 Acetyltransf_7: Acety 32.0 50 0.0011 18.7 2.2 15 2-16 41-55 (79)
74 PRK01712 carbon storage regula 32.0 46 0.00099 20.8 2.1 20 37-56 13-32 (64)
75 PRK03124 S-adenosylmethionine 31.9 53 0.0012 22.3 2.6 39 7-51 24-63 (127)
76 PF02302 PTS_IIB: PTS system, 31.7 48 0.001 19.4 2.1 24 2-25 8-32 (90)
77 TIGR03585 PseH pseudaminic aci 31.5 50 0.0011 20.4 2.3 20 2-21 90-109 (156)
78 KOG3219 Transcription initiati 31.3 36 0.00077 25.4 1.8 21 1-21 138-158 (195)
79 COG2005 ModE N-terminal domain 30.7 37 0.00081 23.6 1.7 16 13-28 34-49 (130)
80 PF10097 DUF2335: Predicted me 30.3 48 0.001 19.3 1.9 28 1-28 13-40 (50)
81 cd05565 PTS_IIB_lactose PTS_II 30.3 28 0.00062 22.6 1.1 23 3-25 10-32 (99)
82 PRK13241 ureA urease subunit g 30.2 70 0.0015 21.7 3.0 46 5-51 35-89 (100)
83 KOG1379 Serine/threonine prote 29.7 66 0.0014 25.8 3.2 36 3-48 282-329 (330)
84 PRK01706 S-adenosylmethionine 29.7 61 0.0013 21.9 2.6 39 7-51 26-65 (123)
85 PHA01976 helix-turn-helix prot 29.6 51 0.0011 18.4 2.0 23 13-35 18-40 (67)
86 TIGR00202 csrA carbon storage 29.5 54 0.0012 20.7 2.2 21 37-57 13-33 (69)
87 PRK00568 carbon storage regula 29.2 53 0.0012 21.1 2.2 29 37-65 13-41 (76)
88 COG0292 RplT Ribosomal protein 29.0 81 0.0017 22.0 3.2 22 8-29 60-81 (118)
89 COG4001 Predicted metal-bindin 28.9 42 0.00091 22.9 1.7 30 5-41 57-86 (102)
90 cd08666 APC10-HECTD3 APC10-lik 28.8 69 0.0015 22.3 2.8 32 36-70 46-79 (134)
91 PF06348 DUF1059: Protein of u 28.6 75 0.0016 18.6 2.6 23 6-28 23-47 (57)
92 PF15250 Raftlin: Raftlin 28.3 47 0.001 27.6 2.2 19 4-24 139-157 (457)
93 PF04719 TAFII28: hTAFII28-lik 27.8 39 0.00085 22.0 1.4 17 1-17 50-66 (90)
94 PF09312 SurA_N: SurA N-termin 27.6 69 0.0015 20.5 2.5 21 9-29 72-92 (118)
95 PRK07922 N-acetylglutamate syn 27.5 64 0.0014 21.5 2.4 21 2-23 85-105 (169)
96 PF15141 DUF4574: Domain of un 27.5 66 0.0014 21.1 2.4 20 6-25 56-75 (84)
97 TIGR02899 spore_safA spore coa 27.3 56 0.0012 16.2 1.7 21 13-33 7-27 (44)
98 PF10470 AKAP7_RIRII_bdg: PKA- 26.9 64 0.0014 20.3 2.1 15 4-18 12-26 (61)
99 cd01816 Raf_RBD Ubiquitin doma 26.7 70 0.0015 20.6 2.4 19 8-26 21-39 (74)
100 PF07478 Dala_Dala_lig_C: D-al 26.6 49 0.0011 23.2 1.8 18 12-29 182-199 (203)
101 TIGR02832 spo_yunB sporulation 26.5 62 0.0013 23.7 2.4 30 5-34 41-73 (204)
102 TIGR02607 antidote_HigA addict 26.2 63 0.0014 18.5 2.0 23 13-35 21-43 (78)
103 PRK10474 putative PTS system f 26.1 49 0.0011 20.7 1.6 17 9-25 2-18 (88)
104 PLN02688 pyrroline-5-carboxyla 26.0 60 0.0013 22.7 2.1 23 8-30 178-200 (266)
105 PF01381 HTH_3: Helix-turn-hel 25.9 53 0.0011 17.6 1.5 22 14-35 13-34 (55)
106 PRK01346 hypothetical protein; 25.9 63 0.0014 24.2 2.3 26 2-28 94-119 (411)
107 PF02599 CsrA: Global regulato 25.7 54 0.0012 19.5 1.6 19 37-55 13-31 (54)
108 cd08667 APC10-ZZEF1 APC10/DOC1 25.5 84 0.0018 21.7 2.8 35 36-71 41-75 (131)
109 PRK03624 putative acetyltransf 25.4 87 0.0019 18.4 2.5 19 2-21 83-101 (140)
110 PF03979 Sigma70_r1_1: Sigma-7 25.2 71 0.0015 19.5 2.1 25 6-30 6-30 (82)
111 PF08681 DUF1778: Protein of u 25.2 86 0.0019 19.2 2.5 20 9-28 10-29 (80)
112 TIGR02406 ectoine_EctA L-2,4-d 25.1 76 0.0017 20.7 2.4 17 2-18 81-97 (157)
113 PRK09266 hypothetical protein; 24.9 42 0.00092 24.0 1.2 31 1-31 189-222 (266)
114 cd00491 4Oxalocrotonate_Tautom 24.9 1.3E+02 0.0027 16.3 4.5 37 6-57 17-53 (58)
115 PRK02770 S-adenosylmethionine 24.6 91 0.002 21.6 2.8 39 7-51 37-76 (139)
116 PF08445 FR47: FR47-like prote 24.5 94 0.002 18.8 2.6 19 2-21 36-54 (86)
117 PF07451 SpoVAD: Stage V sporu 24.3 80 0.0017 25.4 2.8 23 6-28 52-74 (329)
118 smart00422 HTH_MERR helix_turn 24.2 63 0.0014 18.0 1.7 18 13-30 3-20 (70)
119 PRK14571 D-alanyl-alanine synt 24.0 63 0.0014 23.2 2.0 18 12-29 272-289 (299)
120 PRK10514 putative acetyltransf 23.4 70 0.0015 19.6 1.9 15 2-16 84-98 (145)
121 PRK05185 rplT 50S ribosomal pr 23.1 1.2E+02 0.0027 20.5 3.2 19 11-29 62-80 (114)
122 PF13467 RHH_4: Ribbon-helix-h 23.0 87 0.0019 19.4 2.2 19 11-29 24-42 (67)
123 PRK04025 S-adenosylmethionine 22.7 97 0.0021 21.4 2.6 39 7-51 24-63 (139)
124 PRK10151 ribosomal-protein-L7/ 22.6 1.2E+02 0.0025 19.6 2.9 20 2-21 107-126 (179)
125 COG0219 CspR Predicted rRNA me 22.2 42 0.0009 24.2 0.8 22 16-43 44-65 (155)
126 PTZ00030 60S ribosomal protein 22.2 1.3E+02 0.0028 20.7 3.2 19 11-29 54-72 (121)
127 PF07026 DUF1317: Protein of u 22.1 76 0.0017 19.9 1.8 19 37-55 3-21 (60)
128 PRK13477 bifunctional pantoate 22.1 1.3E+02 0.0027 25.0 3.5 17 40-56 46-62 (512)
129 PF12668 DUF3791: Protein of u 22.1 96 0.0021 18.1 2.2 21 10-30 5-25 (62)
130 PRK09831 putative acyltransfer 22.0 82 0.0018 19.9 2.0 15 2-16 87-101 (147)
131 COG0414 PanC Panthothenate syn 22.0 1.4E+02 0.003 23.6 3.6 20 37-56 45-64 (285)
132 PF13624 SurA_N_3: SurA N-term 21.9 1.3E+02 0.0029 19.2 3.0 19 8-26 84-102 (154)
133 PRK00458 S-adenosylmethionine 21.6 1E+02 0.0023 20.8 2.6 39 7-51 35-75 (127)
134 PRK10809 ribosomal-protein-S5- 21.6 1.1E+02 0.0023 20.1 2.6 21 2-22 118-138 (194)
135 PF00633 HHH: Helix-hairpin-he 21.5 55 0.0012 17.1 1.0 10 22-31 8-17 (30)
136 PF08984 DUF1858: Domain of un 21.4 76 0.0017 18.2 1.7 17 12-28 43-59 (59)
137 PF13744 HTH_37: Helix-turn-he 21.2 63 0.0014 19.4 1.3 25 14-38 35-59 (80)
138 PF05821 NDUF_B8: NADH-ubiquin 21.2 73 0.0016 23.0 1.9 19 14-32 44-62 (179)
139 cd08159 APC10-like APC10-like 21.1 1.3E+02 0.0028 20.6 3.0 32 37-71 42-75 (129)
140 PRK12404 stage V sporulation p 21.1 1.1E+02 0.0024 24.5 2.9 25 6-30 55-79 (334)
141 PF00547 Urease_gamma: Urease, 21.1 1.5E+02 0.0032 20.1 3.2 28 5-33 35-62 (99)
142 COG1586 SpeD S-adenosylmethion 21.0 88 0.0019 22.2 2.2 37 8-52 35-74 (136)
143 cd08804 Death_ank2 Death domai 20.9 96 0.0021 19.3 2.2 32 4-36 10-41 (84)
144 PF09278 MerR-DNA-bind: MerR, 20.8 64 0.0014 18.1 1.2 16 15-30 8-23 (65)
145 PF06169 DUF982: Protein of un 20.5 81 0.0018 19.2 1.7 18 9-26 59-76 (76)
146 COG0103 RpsI Ribosomal protein 20.4 1.3E+02 0.0027 21.2 2.9 30 2-31 81-112 (130)
147 PHA02448 hypothetical protein 20.3 79 0.0017 23.3 1.9 22 8-29 96-117 (192)
148 CHL00068 rpl20 ribosomal prote 20.2 1.5E+02 0.0033 20.1 3.2 18 12-29 64-81 (115)
149 PF14174 YycC: YycC-like prote 20.2 86 0.0019 19.2 1.7 19 14-32 12-30 (53)
150 PF13420 Acetyltransf_4: Acety 20.1 1.5E+02 0.0033 18.3 2.9 22 2-23 91-112 (155)
No 1
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=97.96 E-value=4.8e-06 Score=66.20 Aligned_cols=27 Identities=44% Similarity=0.575 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHHHHHHhcCCChHHHh
Q 046622 2 QGIAKRLVKAALQEAARKREMRYADLQ 28 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~y~dL~ 28 (72)
.|+|++||++||.+||+|+||+|+||+
T Consensus 364 ~~~A~hLIr~aL~~aakk~~~r~s~ll 390 (390)
T KOG0700|consen 364 GNPATHLIRHALGRAAKKRGMRLSDLL 390 (390)
T ss_pred CCHHHHHHHHHHhhhhhhccccHhhcC
Confidence 489999999999999999999999985
No 2
>PLN03145 Protein phosphatase 2c; Provisional
Probab=91.54 E-value=0.31 Score=37.80 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=12.1
Q ss_pred ccceEEEEEEecC
Q 046622 39 HDDITVIVLFLNH 51 (72)
Q Consensus 39 HDDITVIVvfLd~ 51 (72)
-|+||||||+|+.
T Consensus 319 ~DNITvIVV~l~~ 331 (365)
T PLN03145 319 GDNLAVVVVCFQS 331 (365)
T ss_pred CCCEEEEEEEeec
Confidence 5999999999997
No 3
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=90.10 E-value=0.34 Score=32.40 Aligned_cols=12 Identities=58% Similarity=0.808 Sum_probs=10.6
Q ss_pred cccceEEEEEEe
Q 046622 38 FHDDITVIVLFL 49 (72)
Q Consensus 38 fHDDITVIVvfL 49 (72)
-+||+|+||+++
T Consensus 243 ~~Dn~t~i~~~~ 254 (254)
T cd00143 243 SHDNITVVVVRL 254 (254)
T ss_pred CCCCEEEEEEeC
Confidence 689999999975
No 4
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=88.01 E-value=1.3 Score=28.92 Aligned_cols=13 Identities=46% Similarity=0.626 Sum_probs=10.2
Q ss_pred ccccceEEEEEEe
Q 046622 37 HFHDDITVIVLFL 49 (72)
Q Consensus 37 ~fHDDITVIVvfL 49 (72)
..+||+||||+-.
T Consensus 180 ~~~DD~tvl~~~~ 192 (193)
T PF07228_consen 180 PLRDDITVLVIRR 192 (193)
T ss_dssp STSS-EEEEEEEE
T ss_pred CCCCceEEEEEEE
Confidence 6899999999864
No 5
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=86.09 E-value=0.83 Score=28.01 Aligned_cols=18 Identities=61% Similarity=0.745 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 046622 2 QGIAKRLVKAALQEAARK 19 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk 19 (72)
.|+|+.|+++||+.|.++
T Consensus 37 qGia~~L~~~~l~~a~~~ 54 (78)
T PF14542_consen 37 QGIAKKLVEAALDYAREN 54 (78)
T ss_dssp TTHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHC
Confidence 499999999999988663
No 6
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=81.64 E-value=1.6 Score=29.44 Aligned_cols=11 Identities=55% Similarity=0.679 Sum_probs=9.5
Q ss_pred ccccceEEEEE
Q 046622 37 HFHDDITVIVL 47 (72)
Q Consensus 37 ~fHDDITVIVv 47 (72)
..+||+|||||
T Consensus 245 ~~~Dn~T~ivv 255 (255)
T smart00332 245 GSKDNITVIVV 255 (255)
T ss_pred CCCCCeEEEEC
Confidence 57899999986
No 7
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=80.67 E-value=1.5 Score=29.02 Aligned_cols=20 Identities=55% Similarity=0.825 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 046622 2 QGIAKRLVKAALQEAARKREM 22 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m 22 (72)
.|+|++|++.||++| |+.+.
T Consensus 54 qGia~~L~~~al~~a-r~~g~ 73 (99)
T COG2388 54 QGIAQKLVEKALEEA-REAGL 73 (99)
T ss_pred CcHHHHHHHHHHHHH-HHcCC
Confidence 499999999999876 44553
No 8
>PTZ00224 protein phosphatase 2C; Provisional
Probab=78.43 E-value=1.6 Score=34.13 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=11.9
Q ss_pred ccceEEEEEEecC
Q 046622 39 HDDITVIVLFLNH 51 (72)
Q Consensus 39 HDDITVIVvfLd~ 51 (72)
.|+||||||++..
T Consensus 260 ~DNITvIvV~~~~ 272 (381)
T PTZ00224 260 KDNISCLIVQLKD 272 (381)
T ss_pred CCCEEEEEEEeeC
Confidence 5999999999986
No 9
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=75.51 E-value=3.7 Score=22.89 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.||++.|++++++.|.+ .+
T Consensus 40 ~Gig~~L~~~~~~~~~~-~g 58 (83)
T PF00583_consen 40 QGIGSKLLQAAEEWARK-RG 58 (83)
T ss_dssp SSHHHHHHHHHHHHHHH-TT
T ss_pred CCCchhhhhhhhhhHHh-cC
Confidence 59999999999988877 55
No 10
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=74.29 E-value=2.6 Score=24.97 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHHHHHHHhcCCC
Q 046622 2 QGIAKRLVKAALQEAARKREMR 23 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~ 23 (72)
.||+++|++++++.| ++ +.+
T Consensus 79 ~Gig~~Ll~~~~~~~-~~-~~~ 98 (117)
T PF13673_consen 79 RGIGRALLDAAEKEA-KD-GIR 98 (117)
T ss_dssp SSHHHHHHHHHHHHH-TT-TCE
T ss_pred CcHHHHHHHHHHHHH-Hc-CCc
Confidence 599999999999977 54 643
No 11
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=72.59 E-value=2.6 Score=31.70 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.2
Q ss_pred ccccceEEEEEEecCcc
Q 046622 37 HFHDDITVIVLFLNHDL 53 (72)
Q Consensus 37 ~fHDDITVIVvfLd~~~ 53 (72)
-=-||||||||+|.+..
T Consensus 291 ~s~DnitvvvV~l~~~~ 307 (330)
T KOG0698|consen 291 GSKDNITVVVVRLKSSP 307 (330)
T ss_pred CCCCCeEEEEEEecCcc
Confidence 35799999999999853
No 12
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=68.18 E-value=8 Score=26.18 Aligned_cols=32 Identities=13% Similarity=0.417 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCChHHHhcccCcCcCccccceEEEEEEecC
Q 046622 10 KAALQEAARKREMRYADLQKIDKMVRRHFHDDITVIVLFLNH 51 (72)
Q Consensus 10 ~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDDITVIVvfLd~ 51 (72)
...|.+||...|++|+||.+ .+-+++|+ +.|.
T Consensus 67 Dp~l~~Aa~~sGl~~~~l~~-------~LP~elti---wvDP 98 (108)
T smart00099 67 DPVIEQACKESGLDIDDLGG-------NLPKELTL---WVDP 98 (108)
T ss_pred CHHHHHHHHHhCCCHHHHHH-------hCCcccEE---EECC
Confidence 35789999999999999987 45566664 5564
No 13
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=66.60 E-value=6.8 Score=23.70 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHHHHHHHhcCCC
Q 046622 2 QGIAKRLVKAALQEAARKREMR 23 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~ 23 (72)
.|++++|++++++++.++ |.+
T Consensus 87 ~Gl~~~L~~~~~~~~~~~-g~~ 107 (127)
T PF13527_consen 87 RGLGRQLMRALLERARER-GVP 107 (127)
T ss_dssp SSHHHHHHHHHHHHHHHT-T-S
T ss_pred CCHHHHHHHHHHHHHHhC-CCC
Confidence 599999999999888774 544
No 14
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=66.26 E-value=6.4 Score=33.37 Aligned_cols=13 Identities=46% Similarity=0.634 Sum_probs=10.7
Q ss_pred ccccceEEEEEEe
Q 046622 37 HFHDDITVIVLFL 49 (72)
Q Consensus 37 ~fHDDITVIVvfL 49 (72)
..+||+||+|+.+
T Consensus 751 ~~~DD~Tvlvirv 763 (764)
T TIGR02865 751 KIKDDMTVIVAKV 763 (764)
T ss_pred CCCCCeEEEEEEe
Confidence 3699999999864
No 15
>PLN03030 cationic peroxidase; Provisional
Probab=65.95 E-value=13 Score=29.07 Aligned_cols=54 Identities=24% Similarity=0.386 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHhcccCcCcCcccc------ceEEEEEEecCcccccCCCCCCCeeeccc
Q 046622 5 AKRLVKAALQEAARKREMRYADLQKIDKMVRRHFHD------DITVIVLFLNHDLISRGTVQDPPLSIRCA 69 (72)
Q Consensus 5 AkrLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHD------DITVIVvfLd~~~~~~~~~~~~~~s~rg~ 69 (72)
|..+|+.+++++.++..-.--.| .|=+||| |=+|+ ||... ......|.+|+||+
T Consensus 37 aE~iV~~~v~~~~~~d~~~aa~l------lRL~FHDCfv~GCDaSvL---l~~~~--~Ek~a~~N~~l~Gf 96 (324)
T PLN03030 37 AESIVRKTVQSHFQSNPAIAPGL------LRMHFHDCFVRGCDASIL---IDGSN--TEKTALPNLLLRGY 96 (324)
T ss_pred HHHHHHHHHHHHHhhCcccchhh------hhhhhhhheecCCceEEe---eCCCc--ccccCCCCcCcchH
Confidence 66788899998887666322333 3449999 66665 45422 23334577799986
No 16
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=65.02 E-value=12 Score=18.41 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=16.4
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 046622 2 QGIAKRLVKAALQEAARKREM 22 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m 22 (72)
.|+++++++++++.+.+ .++
T Consensus 40 ~g~~~~~~~~~~~~~~~-~~~ 59 (65)
T cd04301 40 KGIGSALLEAAEEEARE-RGA 59 (65)
T ss_pred cCHHHHHHHHHHHHHHH-cCC
Confidence 48999999999998886 443
No 17
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=64.27 E-value=8.7 Score=19.47 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHHHHHHhcCCC
Q 046622 2 QGIAKRLVKAALQEAARKREMR 23 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~ 23 (72)
.||++.|+++++..|.+ .+..
T Consensus 96 ~Gig~~Ll~~~~~~~~~-~g~~ 116 (156)
T COG0454 96 KGIGSALLEAALEWARK-RGIS 116 (156)
T ss_pred cchHHHHHHHHHHHHHH-cCce
Confidence 48999999977777766 5554
No 18
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=63.61 E-value=6.6 Score=28.58 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=15.4
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.|||+.||++|++.+.+ +|
T Consensus 99 ~GIg~aLvr~aId~m~~-~g 117 (165)
T KOG3139|consen 99 QGIGKALVRKAIDAMRS-RG 117 (165)
T ss_pred ccHHHHHHHHHHHHHHH-CC
Confidence 49999999999986654 44
No 19
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=63.10 E-value=8.9 Score=23.79 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCChHHH
Q 046622 8 LVKAALQEAARKREMRYADL 27 (72)
Q Consensus 8 LV~aaL~~AAkk~~m~y~dL 27 (72)
-++++|..|.+|+++.+++-
T Consensus 21 ti~d~L~~~c~kr~l~~~~~ 40 (72)
T cd01760 21 SVRDVLAKACKKRGLNPECC 40 (72)
T ss_pred CHHHHHHHHHHHcCCCHHHE
Confidence 37899999999999998764
No 20
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=62.03 E-value=9.1 Score=24.43 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCChHHH
Q 046622 8 LVKAALQEAARKREMRYADL 27 (72)
Q Consensus 8 LV~aaL~~AAkk~~m~y~dL 27 (72)
-|+++|.+|.+|||+.|+.-
T Consensus 21 ti~d~L~kllekRgl~~~~~ 40 (73)
T cd01817 21 SIRDLLSGLCEKRGINYAAV 40 (73)
T ss_pred CHHHHHHHHHHHcCCChhHE
Confidence 37899999999999998753
No 21
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=59.11 E-value=7.6 Score=29.10 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=12.2
Q ss_pred CccccceEEEEEEec
Q 046622 36 RHFHDDITVIVLFLN 50 (72)
Q Consensus 36 R~fHDDITVIVvfLd 50 (72)
-..|||||+|+|...
T Consensus 352 ~~~~DDiTll~lk~~ 366 (367)
T COG2208 352 QIQDDDITLLVLKVK 366 (367)
T ss_pred ccccCceEEEEEEec
Confidence 378899999999754
No 22
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=58.74 E-value=14 Score=23.17 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 046622 2 QGIAKRLVKAALQEAARKREM 22 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m 22 (72)
.||++.|++++++.|. +.|.
T Consensus 100 ~GiG~~ll~~~~~~a~-~~g~ 119 (150)
T PLN02706 100 KGLGKKIIEALTEHAR-SAGC 119 (150)
T ss_pred CCHHHHHHHHHHHHHH-HcCC
Confidence 5999999999999995 4553
No 23
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=58.71 E-value=13 Score=19.33 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCChHHHhc
Q 046622 9 VKAALQEAARKREMRYADLQK 29 (72)
Q Consensus 9 V~aaL~~AAkk~~m~y~dL~~ 29 (72)
..+.|.+.|++.|++-+++..
T Consensus 10 ~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHH
Confidence 356789999999999998754
No 24
>PHA01807 hypothetical protein
Probab=58.69 E-value=13 Score=25.49 Aligned_cols=20 Identities=15% Similarity=0.453 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 046622 2 QGIAKRLVKAALQEAARKREM 22 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m 22 (72)
.||++.|++++++.| ++.|.
T Consensus 96 ~GiG~~Ll~~~~~~A-r~~G~ 115 (153)
T PHA01807 96 AGVAREFLRELIRLA-GEGNL 115 (153)
T ss_pred CCHHHHHHHHHHHHH-HHCCC
Confidence 599999999999985 44553
No 25
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=58.67 E-value=6.9 Score=25.32 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=17.6
Q ss_pred ccccceEEEEEEecCcccccCC
Q 046622 37 HFHDDITVIVLFLNHDLISRGT 58 (72)
Q Consensus 37 ~fHDDITVIVvfLd~~~~~~~~ 58 (72)
-.-|||+|.|+.++.+++.=+-
T Consensus 13 ~IgddI~itVl~i~gnqVkiGi 34 (73)
T COG1551 13 MIGDDIEITVLSIKGNQVKIGI 34 (73)
T ss_pred EecCCeEEEEEEEcCCeEEEee
Confidence 3569999999999998776443
No 26
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=57.44 E-value=7.8 Score=22.07 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=20.4
Q ss_pred HHHHHHhcCCChHHHhcccCcCcC
Q 046622 13 LQEAARKREMRYADLQKIDKMVRR 36 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I~~G~RR 36 (72)
..+.|+..|++.+.+.+|+.|.+.
T Consensus 17 ~~~lA~~~g~s~s~v~~iE~G~~~ 40 (64)
T PF13560_consen 17 QAQLADRLGVSQSTVSRIERGRRP 40 (64)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCC
Confidence 467899999999999999999883
No 27
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=55.48 E-value=21 Score=26.06 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=14.9
Q ss_pred CccccceEEEEEEecCcc
Q 046622 36 RHFHDDITVIVLFLNHDL 53 (72)
Q Consensus 36 R~fHDDITVIVvfLd~~~ 53 (72)
+..+|.||||+|.+....
T Consensus 238 ~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 238 GGGPDNITVVLVRLNGEG 255 (262)
T ss_pred cCCCCceEEEEEEeeccc
Confidence 367999999999988653
No 28
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=53.99 E-value=18 Score=20.95 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCChHHHh
Q 046622 9 VKAALQEAARKREMRYADLQ 28 (72)
Q Consensus 9 V~aaL~~AAkk~~m~y~dL~ 28 (72)
+++++.++|++.|++..++.
T Consensus 28 Lh~~l~~~A~~~gvSlN~~I 47 (51)
T PF05534_consen 28 LHRALAEAAAAEGVSLNQWI 47 (51)
T ss_pred HHHHHHHHHHHhCCCHHHHH
Confidence 56788999999999998864
No 29
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=53.38 E-value=15 Score=23.32 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCh
Q 046622 2 QGIAKRLVKAALQEAARKREMRY 24 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~y 24 (72)
+|++-.++-..++++|+++|+++
T Consensus 12 ~G~sSS~l~~k~~~~~~~~gi~~ 34 (95)
T TIGR00853 12 AGMSTSLLVNKMNKAAEEYGVPV 34 (95)
T ss_pred CchhHHHHHHHHHHHHHHCCCcE
Confidence 58888888899999999999965
No 30
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=52.24 E-value=8.3 Score=23.45 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCChHH
Q 046622 9 VKAALQEAARKREMRYAD 26 (72)
Q Consensus 9 V~aaL~~AAkk~~m~y~d 26 (72)
++++|+.|.+||++.+++
T Consensus 23 i~d~L~~~~~kr~L~~~~ 40 (71)
T PF02196_consen 23 IRDALSKACKKRGLNPEC 40 (71)
T ss_dssp HHHHHHHHHHTTT--CCC
T ss_pred HHHHHHHHHHHcCCCHHH
Confidence 689999999999987764
No 31
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=51.17 E-value=16 Score=22.89 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=19.0
Q ss_pred ccHHH-HHHHHHHHHHHHhcCCChH
Q 046622 2 QGIAK-RLVKAALQEAARKREMRYA 25 (72)
Q Consensus 2 ~GiAk-rLV~aaL~~AAkk~~m~y~ 25 (72)
.|+|. .|..++|.+||++.|.+..
T Consensus 8 ~G~Aht~lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 8 TGIAHTFMAAEALEKAAKKRGWEVK 32 (85)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEE
Confidence 46665 5678999999999997654
No 32
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=51.08 E-value=27 Score=29.62 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=12.0
Q ss_pred cccceEEEEEEecC
Q 046622 38 FHDDITVIVLFLNH 51 (72)
Q Consensus 38 fHDDITVIVvfLd~ 51 (72)
=||+||||||++..
T Consensus 623 g~DNITvIvV~l~~ 636 (645)
T PRK14559 623 GHDNITAILVRLKV 636 (645)
T ss_pred CCCcEEEEEEEecc
Confidence 37999999999864
No 33
>PRK10314 putative acyltransferase; Provisional
Probab=50.96 E-value=22 Score=23.58 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.||++.|++++++.+++..+
T Consensus 89 ~GiG~~Lm~~~~~~~~~~~~ 108 (153)
T PRK10314 89 EKVGQQLMSKTLESCTRHWP 108 (153)
T ss_pred CCHHHHHHHHHHHHHHHHCC
Confidence 49999999999999876543
No 34
>smart00455 RBD Raf-like Ras-binding domain.
Probab=50.82 E-value=19 Score=21.85 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCChHHH
Q 046622 9 VKAALQEAARKREMRYADL 27 (72)
Q Consensus 9 V~aaL~~AAkk~~m~y~dL 27 (72)
++++|..|.+|+|+..++.
T Consensus 22 l~e~L~~~~~kr~l~~~~~ 40 (70)
T smart00455 22 VRDALAKALKKRGLNPECC 40 (70)
T ss_pred HHHHHHHHHHHcCCCHHHE
Confidence 7899999999999887654
No 35
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=49.13 E-value=23 Score=23.77 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHHHHHHhcCCC
Q 046622 2 QGIAKRLVKAALQEAARKREMR 23 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~ 23 (72)
.|+++.|++++++.|. +.|+.
T Consensus 138 kG~G~~ll~~~~~~a~-~~g~~ 158 (191)
T TIGR02382 138 RGIGAELMQTALNWCY-ARGLT 158 (191)
T ss_pred CCHHHHHHHHHHHHHH-HcCCC
Confidence 4999999999999985 56643
No 36
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=48.69 E-value=25 Score=23.65 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCChHHHhcccCcCcCccccceEEEEEEecC
Q 046622 10 KAALQEAARKREMRYADLQKIDKMVRRHFHDDITVIVLFLNH 51 (72)
Q Consensus 10 ~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDDITVIVvfLd~ 51 (72)
-..|.+||...|++|+||.+. +-.++| |++|.
T Consensus 69 Dp~l~~Aa~~sgl~~~~l~~~-------LP~elt---lWvDP 100 (118)
T PF07742_consen 69 DPVLEQAAKESGLSYEDLRSL-------LPRELT---LWVDP 100 (118)
T ss_dssp -HHHHHHHHHTT--HHHHHHH-------S-TTEE---EEEET
T ss_pred CHHHHHHHHHhCCCHHHHHHh-------cchhcE---EEECC
Confidence 357899999999999999863 334554 46675
No 37
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=48.09 E-value=9.7 Score=28.50 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCChHHHhccc
Q 046622 11 AALQEAARKREMRYADLQKID 31 (72)
Q Consensus 11 aaL~~AAkk~~m~y~dL~~I~ 31 (72)
.-|++||+|.||.++++..++
T Consensus 165 p~l~~aa~k~G~d~~~F~~tD 185 (198)
T PF07137_consen 165 PELRRAAKKAGIDFSKFIRTD 185 (198)
T ss_dssp HHHHHHHHHTT--GGGSEE--
T ss_pred HHHHHHHHHhCCCHHHeEEec
Confidence 458999999999999987764
No 38
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=47.83 E-value=20 Score=22.68 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 046622 2 QGIAKRLVKAALQEAARKR 20 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~ 20 (72)
.||+++|++++++.+..+.
T Consensus 106 ~Gig~~Ll~~~~~~~~~~~ 124 (177)
T COG0456 106 RGIGRALLDEALERLRERG 124 (177)
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 4999999999999887754
No 39
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=46.96 E-value=18 Score=29.09 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.8
Q ss_pred HHHHHHhcCCChHHHhcccCcCcCc
Q 046622 13 LQEAARKREMRYADLQKIDKMVRRH 37 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I~~G~RR~ 37 (72)
|..+|+..||++++|+++.+|-+|.
T Consensus 274 L~~iA~~~gvs~~eL~~LNP~~kr~ 298 (456)
T PRK10783 274 LAQAAEMAGMSLTKLKTFNAGYKRS 298 (456)
T ss_pred HHHHHHHcCCCHHHHHHhCccccCC
Confidence 7899999999999999999987665
No 40
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=45.80 E-value=22 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCh
Q 046622 2 QGIAKRLVKAALQEAARKREMRY 24 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~y 24 (72)
+|++-.++-..++++++++|+.|
T Consensus 8 ~G~sTS~~~~ki~~~~~~~~~~~ 30 (96)
T cd05564 8 AGMSTSILVKKMKKAAEKRGIDA 30 (96)
T ss_pred CCchHHHHHHHHHHHHHHCCCce
Confidence 57888888889999999999864
No 41
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=45.71 E-value=16 Score=20.44 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=14.0
Q ss_pred HHHHHHhcCCChHHHhccc
Q 046622 13 LQEAARKREMRYADLQKID 31 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I~ 31 (72)
+.+||++.|++++-|...=
T Consensus 19 ~r~AA~~ygVp~sTL~~r~ 37 (45)
T PF05225_consen 19 IRKAAKKYGVPRSTLRRRL 37 (45)
T ss_dssp HHHHHHHHT--HHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 6789999999999987543
No 42
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=44.97 E-value=17 Score=21.62 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=16.6
Q ss_pred HHHHHHhcCCChHHHhcc
Q 046622 13 LQEAARKREMRYADLQKI 30 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I 30 (72)
+++||++-|+.-..|+++
T Consensus 18 ~~eAA~~Lgv~~T~LKr~ 35 (52)
T PF02042_consen 18 IKEAAKELGVSVTTLKRR 35 (52)
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 689999999999999987
No 43
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=43.82 E-value=33 Score=21.39 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 046622 2 QGIAKRLVKAALQEAARKREM 22 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m 22 (72)
.|+|+.|++.+++.| +..+.
T Consensus 78 ~G~g~~ll~~~~~~~-~~~~~ 97 (146)
T PRK09491 78 QGLGRALLEHLIDEL-EKRGV 97 (146)
T ss_pred CCHHHHHHHHHHHHH-HHCCC
Confidence 599999999999976 45554
No 44
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=43.11 E-value=26 Score=23.07 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHhcccCcCcCccccc-eEEEEEEecC
Q 046622 7 RLVKAALQEAARKREMRYADLQKIDKMVRRHFHDD-ITVIVLFLNH 51 (72)
Q Consensus 7 rLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDD-ITVIVvfLd~ 51 (72)
..++++|.+||++.|++.-+..-- +|... +|.+|+.-++
T Consensus 23 ~~l~~~l~~a~~~~g~ti~~~~~h------~F~p~Gvt~v~llaES 62 (112)
T TIGR03330 23 EFIEEILLEAAKVAGATLVASHFH------KFSPGGVSGVVLLAES 62 (112)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEE------EcCCCcEEEEEEeccc
Confidence 468999999999999885433221 33333 8888887665
No 45
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=42.28 E-value=62 Score=18.00 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCCChHHHhcccCcCcCccccceEEEEEEecCcccccCC
Q 046622 6 KRLVKAALQEAARKREMRYADLQKIDKMVRRHFHDDITVIVLFLNHDLISRGT 58 (72)
Q Consensus 6 krLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDDITVIVvfLd~~~~~~~~ 58 (72)
+.|+++..+..++.-|. =.||++|+|...+.+..+-+.
T Consensus 18 ~~l~~~it~~l~~~lg~---------------~~~~v~V~i~e~~~~~w~~gG 55 (63)
T TIGR00013 18 RQLIEGVTEAMAETLGA---------------NLESIVVIIDEMPKNNYGIGG 55 (63)
T ss_pred HHHHHHHHHHHHHHhCC---------------CcccEEEEEEEcCHHHeeECC
Confidence 45666666666665552 268999999998887666544
No 46
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=41.29 E-value=25 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCChHHH
Q 046622 9 VKAALQEAARKREMRYADL 27 (72)
Q Consensus 9 V~aaL~~AAkk~~m~y~dL 27 (72)
+++|++.|++.-+++-++|
T Consensus 7 ~eeAi~~A~~~l~~~~~~~ 25 (52)
T PF14804_consen 7 VEEAIEKALKELGVPREEL 25 (52)
T ss_dssp HHHHHHHHHHHTT--GGGE
T ss_pred HHHHHHHHHHHhCCChHHE
Confidence 6899999999999775443
No 47
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=40.42 E-value=27 Score=18.80 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=17.1
Q ss_pred HHHHHHH-HHHHHHHhcCCChHHHhcc
Q 046622 5 AKRLVKA-ALQEAARKREMRYADLQKI 30 (72)
Q Consensus 5 AkrLV~a-aL~~AAkk~~m~y~dL~~I 30 (72)
.+.|.+. ..++.|+..|++.+.++.|
T Consensus 21 ~~~~~~~~s~~~vA~~~~vs~~TV~ri 47 (52)
T PF13542_consen 21 LKLLRESRSFKDVARELGVSWSTVRRI 47 (52)
T ss_pred HHHHhhcCCHHHHHHHHCCCHHHHHHH
Confidence 4444555 5667777788887777654
No 48
>PF10522 RII_binding_1: RII binding domain; InterPro: IPR018459 This domain is found is a wide variety of AKAPs (A kinase anchoring proteins) [].
Probab=39.99 E-value=30 Score=16.88 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 046622 4 IAKRLVKAALQEA 16 (72)
Q Consensus 4 iAkrLV~aaL~~A 16 (72)
-|.+||+.+.++|
T Consensus 5 ~a~rivq~VIq~A 17 (18)
T PF10522_consen 5 YANRIVQNVIQQA 17 (18)
T ss_pred HHHHHHHHHHHHh
Confidence 3789999999887
No 49
>PTZ00330 acetyltransferase; Provisional
Probab=39.96 E-value=33 Score=21.05 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHHHHHHH
Q 046622 2 QGIAKRLVKAALQEAAR 18 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAk 18 (72)
.||++.|++.+++.|..
T Consensus 97 ~Gig~~l~~~~~~~a~~ 113 (147)
T PTZ00330 97 QGLGRALISDLCEIARS 113 (147)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 59999999998887743
No 50
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=39.59 E-value=25 Score=22.03 Aligned_cols=14 Identities=50% Similarity=0.733 Sum_probs=11.2
Q ss_pred ccHHHHHHHHHHHH
Q 046622 2 QGIAKRLVKAALQE 15 (72)
Q Consensus 2 ~GiAkrLV~aaL~~ 15 (72)
.|||.+|+.+|...
T Consensus 20 ~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 20 KGIATRLLDAAREN 33 (70)
T ss_pred hhHHHHHHHHHHHh
Confidence 59999999877654
No 51
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=39.21 E-value=41 Score=22.62 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHhcccCc
Q 046622 5 AKRLVKAALQEAARKREMRYADLQKIDKM 33 (72)
Q Consensus 5 AkrLV~aaL~~AAkk~~m~y~dL~~I~~G 33 (72)
|-.|+...+.|.|+ .|.++.||++.-+-
T Consensus 32 AvAlIs~~v~E~aR-dG~svaelm~~g~~ 59 (96)
T cd00390 32 AVALIADEILEGAR-DGKSVAELMSLGKT 59 (96)
T ss_pred HHHHHHHHHHHHhh-cCCCHHHHHHHHhh
Confidence 34688889999998 56799999987543
No 52
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=38.87 E-value=42 Score=20.73 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.|+++.|++.++..|....+
T Consensus 93 ~Gig~~ll~~l~~~~~~~~~ 112 (162)
T PRK10140 93 RGVASALMREMIEMCDNWLR 112 (162)
T ss_pred CCHHHHHHHHHHHHHHhhCC
Confidence 49999999999988765444
No 53
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=38.42 E-value=33 Score=17.71 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=16.3
Q ss_pred HHHHHHhcCCChHHHhcccCc
Q 046622 13 LQEAARKREMRYADLQKIDKM 33 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I~~G 33 (72)
+..-|++.+++.++|++..++
T Consensus 9 l~~IA~~~~~~~~~l~~~N~~ 29 (44)
T PF01476_consen 9 LWSIAKRYGISVDELMELNPN 29 (44)
T ss_dssp HHHHHHHTTS-HHHHHHHCCT
T ss_pred HHHHHhhhhhhHhHHHHhcCC
Confidence 556688899999999998844
No 54
>PRK13242 ureA urease subunit gamma; Provisional
Probab=38.24 E-value=42 Score=22.78 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHhcccCc--CcC-------ccccceEEEEEEecC
Q 046622 5 AKRLVKAALQEAARKREMRYADLQKIDKM--VRR-------HFHDDITVIVLFLNH 51 (72)
Q Consensus 5 AkrLV~aaL~~AAkk~~m~y~dL~~I~~G--~RR-------~fHDDITVIVvfLd~ 51 (72)
|-.|+...+.|.|+ .|.++.||++.-+- .|+ ..=++|-|=..|-|+
T Consensus 35 AvAlIs~~i~E~aR-dG~svaelm~~g~~vL~~~dVm~GV~~mi~~vqVEatFpDG 89 (100)
T PRK13242 35 AVAVLSAYVLDGAR-EGKTVEEVMDGARSVLKADDVMDGVPDLLPLIQVEAVFSDG 89 (100)
T ss_pred HHHHHHHHHHHHhh-cCCcHHHHHHHHHhhCCHHhcccCHHHhhcceeEEEEcCCC
Confidence 44788899999998 56999999987533 122 334556666666664
No 55
>PRK07757 acetyltransferase; Provisional
Probab=37.35 E-value=38 Score=21.19 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 046622 2 QGIAKRLVKAALQEAARKREM 22 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m 22 (72)
.|+++.|++++++.|. +.+.
T Consensus 80 ~Glg~~Ll~~l~~~a~-~~g~ 99 (152)
T PRK07757 80 QGIGRMLVEACLEEAR-ELGV 99 (152)
T ss_pred CCHHHHHHHHHHHHHH-hCCC
Confidence 4999999999998775 4453
No 56
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=37.07 E-value=43 Score=23.33 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=17.6
Q ss_pred ccHHH-HHHHHHHHHHHHhcCC
Q 046622 2 QGIAK-RLVKAALQEAARKREM 22 (72)
Q Consensus 2 ~GiAk-rLV~aaL~~AAkk~~m 22 (72)
+|||. ++..++|++||++.|.
T Consensus 12 tGIAHTyMAAeaLe~~A~~~g~ 33 (122)
T COG1445 12 TGIAHTYMAAEALEKAAKKLGV 33 (122)
T ss_pred chHHHHHHHHHHHHHHHHHcCC
Confidence 57876 6788999999999874
No 57
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=36.86 E-value=39 Score=20.61 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 046622 2 QGIAKRLVKAALQEAARKREM 22 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m 22 (72)
.|+++.|++.++..| ++.+.
T Consensus 91 ~GiG~~Ll~~~~~~a-~~~~~ 110 (144)
T PRK10146 91 LNVGSKLLAWAEEEA-RQAGA 110 (144)
T ss_pred CCHHHHHHHHHHHHH-HHcCC
Confidence 499999999888876 44553
No 58
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=36.81 E-value=35 Score=17.97 Aligned_cols=23 Identities=4% Similarity=-0.010 Sum_probs=17.4
Q ss_pred HHHHHHhcCCChHHHhcccCcCc
Q 046622 13 LQEAARKREMRYADLQKIDKMVR 35 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I~~G~R 35 (72)
.++.|++-|++.+-+-++..|.+
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~ 40 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKP 40 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCC
Confidence 46677788888888888887764
No 59
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=36.24 E-value=13 Score=24.44 Aligned_cols=21 Identities=29% Similarity=0.740 Sum_probs=17.2
Q ss_pred cCCChHHHhcccCcCcCcccc
Q 046622 20 REMRYADLQKIDKMVRRHFHD 40 (72)
Q Consensus 20 ~~m~y~dL~~I~~G~RR~fHD 40 (72)
..++|++||+.|+=-.|.|-|
T Consensus 68 ~~~~y~~lm~~~~~lk~nyf~ 88 (89)
T TIGR03829 68 DETTYEELMKMPRLLKRNYFD 88 (89)
T ss_pred ccccHHHHhhcHHHHhhcccC
Confidence 468999999999887777654
No 60
>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=35.92 E-value=34 Score=25.41 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=23.1
Q ss_pred ccceEEEEEEecCcccccCCCCCCCeeecccc
Q 046622 39 HDDITVIVLFLNHDLISRGTVQDPPLSIRCAL 70 (72)
Q Consensus 39 HDDITVIVvfLd~~~~~~~~~~~~~~s~rg~~ 70 (72)
|=||..||||+|.. .-.+..+..++||.|.
T Consensus 68 ~~~I~~v~if~~f~--~DeSYtPs~i~I~~G~ 97 (184)
T KOG3437|consen 68 RVDIQYVVIFLDFK--QDESYTPSKIKIRAGN 97 (184)
T ss_pred EEEEEEEEEEEEEe--cccccCceeEEEEecC
Confidence 45899999999974 3466667789998763
No 61
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=35.41 E-value=42 Score=21.88 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCh
Q 046622 2 QGIAKRLVKAALQEAARKREMRY 24 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~y 24 (72)
+|++-.++-.-++++|+++|+++
T Consensus 10 ~G~STSlla~k~k~~~~e~gi~~ 32 (104)
T PRK09590 10 AGMSSSMMAKKTTEYLKEQGKDI 32 (104)
T ss_pred CchHHHHHHHHHHHHHHHCCCce
Confidence 57888888888999999999875
No 62
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=35.24 E-value=39 Score=22.42 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=18.9
Q ss_pred ccHHH-HHHHHHHHHHHHhcCCChH
Q 046622 2 QGIAK-RLVKAALQEAARKREMRYA 25 (72)
Q Consensus 2 ~GiAk-rLV~aaL~~AAkk~~m~y~ 25 (72)
.|+|. +|..++|.+||++.|....
T Consensus 13 ~GiAht~lAAeaL~kAA~~~G~~i~ 37 (114)
T PRK10427 13 SGVAHTYMAAERLEKLCQLEKWGVK 37 (114)
T ss_pred CcHHHHHHHHHHHHHHHHHCCCeEE
Confidence 46665 5778999999999997654
No 63
>TIGR00193 urease_gam urease, gamma subunit. Nomenclature for the various subunits of urease in Helicobacter differs from nomenclature in most other species.
Probab=35.18 E-value=52 Score=22.41 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHhcccCc--CcC-------ccccceEEEEEEecC
Q 046622 5 AKRLVKAALQEAARKREMRYADLQKIDKM--VRR-------HFHDDITVIVLFLNH 51 (72)
Q Consensus 5 AkrLV~aaL~~AAkk~~m~y~dL~~I~~G--~RR-------~fHDDITVIVvfLd~ 51 (72)
|-.||...+.|.|+ .|.++.||+++-+- .|+ ..=++|-|=..|-|+
T Consensus 35 AvAlIs~~v~E~aR-dG~svaelm~~g~~~L~~~dVm~GV~~mi~~vqVEatFpDG 89 (102)
T TIGR00193 35 AVAYISAHIMEGAR-DGKKVAELMQYGRTLLTPDDVMEGVAEMLHEVQIEATFPDG 89 (102)
T ss_pred HHHHHHHHHHHHhh-cCCcHHHHHHHHHhhCCHHhcccCHHHhhcceeEEEEcCCC
Confidence 44688889999998 56999999998543 222 344566776777765
No 64
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=34.77 E-value=51 Score=21.97 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.|+++.|++.+++.|.+ .|
T Consensus 141 ~Gig~~Ll~~~~~~a~~-~g 159 (194)
T PRK10975 141 RGIGARLMQAALNWCQA-RG 159 (194)
T ss_pred CCHHHHHHHHHHHHHHH-cC
Confidence 48999999999999964 44
No 65
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=34.67 E-value=48 Score=22.68 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHhcccCcCcCccccc-eEEEEEEecCc
Q 046622 7 RLVKAALQEAARKREMRYADLQKIDKMVRRHFHDD-ITVIVLFLNHD 52 (72)
Q Consensus 7 rLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDD-ITVIVvfLd~~ 52 (72)
..+++++.+||++.|++.-+..- -+|... ||.+++.-++.
T Consensus 25 ~~l~~~l~~aa~~~g~tiv~~~~------h~F~p~GvTgv~lLaESH 65 (131)
T PRK01236 25 EDIREILEGAVKYAELTKISSHY------YQFNPHGATGVVLLAESH 65 (131)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE------EEcCCCcEEEEEEeeccE
Confidence 57899999999999988544322 245444 89888877763
No 66
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=34.16 E-value=38 Score=20.04 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCChHHHhc
Q 046622 11 AALQEAARKREMRYADLQK 29 (72)
Q Consensus 11 aaL~~AAkk~~m~y~dL~~ 29 (72)
..|.+|+++++++.+++.+
T Consensus 32 ~~L~eA~~~~~ld~~~vl~ 50 (56)
T PF04405_consen 32 RSLEEACEEKGLDPEEVLE 50 (56)
T ss_pred chHHHHHHHcCCCHHHHHH
Confidence 3589999999999888754
No 67
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=33.99 E-value=43 Score=21.02 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=18.5
Q ss_pred ccHHH-HHHHHHHHHHHHhcCCCh
Q 046622 2 QGIAK-RLVKAALQEAARKREMRY 24 (72)
Q Consensus 2 ~GiAk-rLV~aaL~~AAkk~~m~y 24 (72)
+|+|. .|+.++|.+||+++|++.
T Consensus 9 ~G~a~s~laa~~L~~aa~~~g~~~ 32 (96)
T cd05569 9 TGIAHTYMAAEALEKAAKKLGWEI 32 (96)
T ss_pred CchhHHHHHHHHHHHHHHHCCCeE
Confidence 35554 578999999999999874
No 68
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=33.61 E-value=39 Score=21.59 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=17.1
Q ss_pred CccHHHHHHHHHHHHHHHhcC
Q 046622 1 MQGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 1 ~~GiAkrLV~aaL~~AAkk~~ 21 (72)
|+|+++++-++|=.+||++.+
T Consensus 45 L~~v~r~~aReaR~~~aq~~~ 65 (67)
T COG3114 45 LRGVARQRAREARLRAAQQQE 65 (67)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 468899999999999998544
No 69
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=33.52 E-value=89 Score=17.27 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=15.6
Q ss_pred ccceEEEEEEecCcccccCC
Q 046622 39 HDDITVIVLFLNHDLISRGT 58 (72)
Q Consensus 39 HDDITVIVvfLd~~~~~~~~ 58 (72)
.|||+|++...+.+..+.+.
T Consensus 36 ~~~v~V~i~e~~~~~~~~gG 55 (61)
T PRK02220 36 AEHIHVIINEMSKNHYAVGG 55 (61)
T ss_pred hhhEEEEEEEeChhHeEECC
Confidence 68999999998887666544
No 70
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=33.34 E-value=43 Score=19.60 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.|+|+.|++++++.| +..+
T Consensus 69 ~G~g~~ll~~~~~~~-~~~~ 87 (131)
T TIGR01575 69 QGIGRALLRELIDEA-KGRG 87 (131)
T ss_pred CCHHHHHHHHHHHHH-HHcC
Confidence 489999999888765 4444
No 71
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=32.89 E-value=27 Score=21.54 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCChHHHh
Q 046622 10 KAALQEAARKREMRYADLQ 28 (72)
Q Consensus 10 ~aaL~~AAkk~~m~y~dL~ 28 (72)
++|+.++|++.|+.++.+-
T Consensus 57 ~eaV~~~~~~aG~p~d~I~ 75 (77)
T PF14026_consen 57 EEAVREHARRAGLPADRIT 75 (77)
T ss_pred HHHHHHHHHHcCCCcceEE
Confidence 4789999999999887654
No 72
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=32.73 E-value=42 Score=24.00 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 046622 2 QGIAKRLVKAALQEAARK 19 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk 19 (72)
.||..+|++++|++|.++
T Consensus 90 ~GIG~~Lvr~~le~a~~~ 107 (171)
T COG3153 90 QGIGSALVREGLEALRLA 107 (171)
T ss_pred CcHHHHHHHHHHHHHHHC
Confidence 489999999999877653
No 73
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=32.03 E-value=50 Score=18.66 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.8
Q ss_pred ccHHHHHHHHHHHHH
Q 046622 2 QGIAKRLVKAALQEA 16 (72)
Q Consensus 2 ~GiAkrLV~aaL~~A 16 (72)
.||++.|++.+++++
T Consensus 41 ~Gig~~ll~~~~~~~ 55 (79)
T PF13508_consen 41 KGIGSKLLNYLLEKA 55 (79)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc
Confidence 489999999987776
No 74
>PRK01712 carbon storage regulator; Provisional
Probab=32.00 E-value=46 Score=20.77 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=15.9
Q ss_pred ccccceEEEEEEecCccccc
Q 046622 37 HFHDDITVIVLFLNHDLISR 56 (72)
Q Consensus 37 ~fHDDITVIVvfLd~~~~~~ 56 (72)
.+-|||.|.|+....+++.=
T Consensus 13 ~Igd~I~I~V~~i~~~~Vrl 32 (64)
T PRK01712 13 MIGDDIEVTVLGVKGNQVRI 32 (64)
T ss_pred EeCCCEEEEEEEEeCCEEEE
Confidence 45699999999998876543
No 75
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=31.90 E-value=53 Score=22.26 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCChHHHhcccCcCcCccccc-eEEEEEEecC
Q 046622 7 RLVKAALQEAARKREMRYADLQKIDKMVRRHFHDD-ITVIVLFLNH 51 (72)
Q Consensus 7 rLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDD-ITVIVvfLd~ 51 (72)
.++++++.+||++.|++.-+... -+|... ||.+|+.-++
T Consensus 24 ~~l~~~l~~a~~~~g~til~~~~------h~F~p~GvTgv~llaES 63 (127)
T PRK03124 24 ELIEDIMVDAALEAGAEVREVAF------HKFSPQGVSGVVVISES 63 (127)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEe------EEcCCCcEEEEEEeecc
Confidence 47899999999999988544322 244434 8999887776
No 76
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=31.66 E-value=48 Score=19.45 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=17.7
Q ss_pred ccHHH-HHHHHHHHHHHHhcCCChH
Q 046622 2 QGIAK-RLVKAALQEAARKREMRYA 25 (72)
Q Consensus 2 ~GiAk-rLV~aaL~~AAkk~~m~y~ 25 (72)
+|++- .|++..++++++++|+.+.
T Consensus 8 ~Gi~TS~~~~~~i~~~~~~~gi~~~ 32 (90)
T PF02302_consen 8 SGIGTSLMVANKIKKALKELGIEVE 32 (90)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTECEE
T ss_pred ChHHHHHHHHHHHHHHHHhccCceE
Confidence 46554 4556999999999996554
No 77
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=31.46 E-value=50 Score=20.43 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.|+++.++++++..|-+..+
T Consensus 90 ~G~g~~~~~~~~~~a~~~~~ 109 (156)
T TIGR03585 90 PGVGSVLEEAALEYAFEHLG 109 (156)
T ss_pred cCchHHHHHHHHHHHHhhCC
Confidence 48999999999888776544
No 78
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=31.32 E-value=36 Score=25.41 Aligned_cols=21 Identities=48% Similarity=0.593 Sum_probs=17.5
Q ss_pred CccHHHHHHHHHHHHHHHhcC
Q 046622 1 MQGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 1 ~~GiAkrLV~aaL~~AAkk~~ 21 (72)
|+||||-.|-+.+++|-.=++
T Consensus 138 ~~GiaKvFVGEvVEeAl~V~~ 158 (195)
T KOG3219|consen 138 MAGIAKVFVGEVVEEALDVRE 158 (195)
T ss_pred ecchhhHhHHHHHHHHHHHHH
Confidence 689999999999999966444
No 79
>COG2005 ModE N-terminal domain of molybdenum-binding protein [General function prediction only]
Probab=30.68 E-value=37 Score=23.58 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.1
Q ss_pred HHHHHHhcCCChHHHh
Q 046622 13 LQEAARKREMRYADLQ 28 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~ 28 (72)
+..|||+.||+|.--.
T Consensus 34 Is~AAk~~GiSYk~AW 49 (130)
T COG2005 34 ISAAAKAAGISYKSAW 49 (130)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 6789999999997533
No 80
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=30.34 E-value=48 Score=19.32 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHHHHHHhcCCChHHHh
Q 046622 1 MQGIAKRLVKAALQEAARKREMRYADLQ 28 (72)
Q Consensus 1 ~~GiAkrLV~aaL~~AAkk~~m~y~dL~ 28 (72)
+.|.|.|++.-|-++.+.+++|.-..|.
T Consensus 13 ~Pg~aerI~~mae~eq~hR~~~e~~~l~ 40 (50)
T PF10097_consen 13 LPGAAERIFAMAEKEQEHRHELEKKALK 40 (50)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999887655543
No 81
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.34 E-value=28 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHHHHhcCCChH
Q 046622 3 GIAKRLVKAALQEAARKREMRYA 25 (72)
Q Consensus 3 GiAkrLV~aaL~~AAkk~~m~y~ 25 (72)
|..--++-+-++++|+++|+.++
T Consensus 10 GaSSs~la~km~~~a~~~gi~~~ 32 (99)
T cd05565 10 GGTSGLLANALNKGAKERGVPLE 32 (99)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEE
Confidence 45556788889999999999764
No 82
>PRK13241 ureA urease subunit gamma; Provisional
Probab=30.22 E-value=70 Score=21.67 Aligned_cols=46 Identities=28% Similarity=0.329 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHhcccCc--CcC-------ccccceEEEEEEecC
Q 046622 5 AKRLVKAALQEAARKREMRYADLQKIDKM--VRR-------HFHDDITVIVLFLNH 51 (72)
Q Consensus 5 AkrLV~aaL~~AAkk~~m~y~dL~~I~~G--~RR-------~fHDDITVIVvfLd~ 51 (72)
|-.|+...+.|.|+ .|.++.||++.-+- .|+ ..=++|-|=..|-|+
T Consensus 35 AvAlI~~~v~E~aR-dG~svaelm~~g~~~L~~ddVm~GV~emi~~vqVEatFpDG 89 (100)
T PRK13241 35 AVALISDALLEGAR-DGKTVAELMSYGRTVLTRDDVMEGVPEMIPDVQVEATFPDG 89 (100)
T ss_pred HHHHHHHHHHHHhh-CCCCHHHHHHHhhhhCCHHhcccCHHHhhcceeEEEEcCCC
Confidence 34688888999998 56999999987533 122 233455555556554
No 83
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=29.75 E-value=66 Score=25.81 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHH------------HHHHhcCCChHHHhcccCcCcCccccceEEEEEE
Q 046622 3 GIAKRLVKAALQ------------EAARKREMRYADLQKIDKMVRRHFHDDITVIVLF 48 (72)
Q Consensus 3 GiAkrLV~aaL~------------~AAkk~~m~y~dL~~I~~G~RR~fHDDITVIVvf 48 (72)
..|+++++.|-+ .+|++.+..|. -| =-|||||||.+
T Consensus 282 ~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~------gG----K~DdITvvls~ 329 (330)
T KOG1379|consen 282 VTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAY------GG----KPDDITVVLSS 329 (330)
T ss_pred HHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccC------CC----CcccEEEEEec
Confidence 467777777755 45677765543 22 25999999976
No 84
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=29.71 E-value=61 Score=21.87 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHhcccCcCcCccccc-eEEEEEEecC
Q 046622 7 RLVKAALQEAARKREMRYADLQKIDKMVRRHFHDD-ITVIVLFLNH 51 (72)
Q Consensus 7 rLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDD-ITVIVvfLd~ 51 (72)
..+++++.+||+..|++.-+... -+|... ||.+++.-++
T Consensus 26 ~~l~~~l~~aa~~~g~tiv~~~~------h~F~p~GvTgv~llaES 65 (123)
T PRK01706 26 YFLEHHLVEAADLSGAHVLNVST------KEFDPQGVTVLVLLSES 65 (123)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEE------EEcCCCcEEEEEEeecc
Confidence 36899999999999988544432 244433 8888887765
No 85
>PHA01976 helix-turn-helix protein
Probab=29.63 E-value=51 Score=18.43 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=18.8
Q ss_pred HHHHHHhcCCChHHHhcccCcCc
Q 046622 13 LQEAARKREMRYADLQKIDKMVR 35 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I~~G~R 35 (72)
.++.|++-|++.+-+.++..|.+
T Consensus 18 ~~~lA~~~gvs~~~v~~~e~g~~ 40 (67)
T PHA01976 18 APELSRRAGVRHSLIYDFEADKR 40 (67)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35788888899998988888865
No 86
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=29.50 E-value=54 Score=20.69 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=16.7
Q ss_pred ccccceEEEEEEecCcccccC
Q 046622 37 HFHDDITVIVLFLNHDLISRG 57 (72)
Q Consensus 37 ~fHDDITVIVvfLd~~~~~~~ 57 (72)
.+.|||+|.|+....+++.=+
T Consensus 13 ~Igd~I~I~Vl~i~g~~VrlG 33 (69)
T TIGR00202 13 QIGDDIEVKVLSVKGDQVKLG 33 (69)
T ss_pred EeCCCEEEEEEEEcCCeEEEE
Confidence 577999999999988766533
No 87
>PRK00568 carbon storage regulator; Provisional
Probab=29.22 E-value=53 Score=21.10 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=19.5
Q ss_pred ccccceEEEEEEecCcccccCCCCCCCee
Q 046622 37 HFHDDITVIVLFLNHDLISRGTVQDPPLS 65 (72)
Q Consensus 37 ~fHDDITVIVvfLd~~~~~~~~~~~~~~s 65 (72)
..-|||.|.|+..+++++.=+-..+..++
T Consensus 13 ~Igd~I~I~Vl~i~g~~VrlGI~AP~~v~ 41 (76)
T PRK00568 13 VIDDNIHIKVISIDRGSVRLGFEAPESTL 41 (76)
T ss_pred EeCCCeEEEEEEEcCCEEEEEEECCCCCe
Confidence 45699999999999877654333333333
No 88
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=28.98 E-value=81 Score=22.05 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCChHHHhc
Q 046622 8 LVKAALQEAARKREMRYADLQK 29 (72)
Q Consensus 8 LV~aaL~~AAkk~~m~y~dL~~ 29 (72)
|-=+=+.-||+..||+|+.+++
T Consensus 60 LWI~RINAA~R~~GlsYS~fi~ 81 (118)
T COG0292 60 LWIARINAAARENGLSYSRFIN 81 (118)
T ss_pred HHHHHHHHHHHHcCCcHHHHHH
Confidence 3334467799999999999864
No 89
>COG4001 Predicted metal-binding protein [General function prediction only]
Probab=28.91 E-value=42 Score=22.89 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHhcccCcCcCccccc
Q 046622 5 AKRLVKAALQEAARKREMRYADLQKIDKMVRRHFHDD 41 (72)
Q Consensus 5 AkrLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDD 41 (72)
+.++|+..+++-|+-.|+.-+|+.+ .||||
T Consensus 57 ~a~ivkkive~garAfgVdee~iRE-------~~~d~ 86 (102)
T COG4001 57 LASIVKKIVERGARAFGVDEEDIRE-------QMHDQ 86 (102)
T ss_pred HHHHHHHHHHhcchhcCCCHHHHHH-------HHHHH
Confidence 5678999999999999999999876 67765
No 90
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=28.76 E-value=69 Score=22.33 Aligned_cols=32 Identities=6% Similarity=0.163 Sum_probs=24.9
Q ss_pred CccccceEE--EEEEecCcccccCCCCCCCeeecccc
Q 046622 36 RHFHDDITV--IVLFLNHDLISRGTVQDPPLSIRCAL 70 (72)
Q Consensus 36 R~fHDDITV--IVvfLd~~~~~~~~~~~~~~s~rg~~ 70 (72)
=+|+..+.| +.+|+|. .-.+..+..++|++|-
T Consensus 46 l~f~~~v~i~~l~i~v~~---~DeSYtP~~I~V~~G~ 79 (134)
T cd08666 46 LHMKKGTIIKKLLLTVDA---TDDNYMPKRVAVYGGE 79 (134)
T ss_pred EEECCCcEeeEEEEEecC---CCCCcCCcEEEEEecC
Confidence 478888777 7888885 3577778899999984
No 91
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=28.61 E-value=75 Score=18.64 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhcCCCh--HHHh
Q 046622 6 KRLVKAALQEAARKREMRY--ADLQ 28 (72)
Q Consensus 6 krLV~aaL~~AAkk~~m~y--~dL~ 28 (72)
--|++++.+.|...+||++ .||.
T Consensus 23 dEll~~~~~Ha~~~Hg~~~~~~el~ 47 (57)
T PF06348_consen 23 DELLEAVVEHAREVHGMTEIPEELR 47 (57)
T ss_pred HHHHHHHHHHHHHhcCCccCCHHHH
Confidence 4589999999999999986 3554
No 92
>PF15250 Raftlin: Raftlin
Probab=28.32 E-value=47 Score=27.64 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCh
Q 046622 4 IAKRLVKAALQEAARKREMRY 24 (72)
Q Consensus 4 iAkrLV~aaL~~AAkk~~m~y 24 (72)
+++-||+. +++||+ +||.|
T Consensus 139 ~i~~lIkK-IqdAA~-qG~kF 157 (457)
T PF15250_consen 139 IIKELIKK-IQDAAS-QGMKF 157 (457)
T ss_pred HHHHHHHH-HHHHHh-ccCeE
Confidence 67889998 899997 88876
No 93
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=27.85 E-value=39 Score=21.99 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=13.9
Q ss_pred CccHHHHHHHHHHHHHH
Q 046622 1 MQGIAKRLVKAALQEAA 17 (72)
Q Consensus 1 ~~GiAkrLV~aaL~~AA 17 (72)
|+|+||-.|-+.+++|=
T Consensus 50 v~g~aKvFVGEiVE~A~ 66 (90)
T PF04719_consen 50 VAGIAKVFVGEIVEEAR 66 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999998888888774
No 94
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=27.61 E-value=69 Score=20.54 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCChHHHhc
Q 046622 9 VKAALQEAARKREMRYADLQK 29 (72)
Q Consensus 9 V~aaL~~AAkk~~m~y~dL~~ 29 (72)
|.+++++-|++.+|+.++|.+
T Consensus 72 vd~~i~~ia~~n~ls~~ql~~ 92 (118)
T PF09312_consen 72 VDEAIANIAKQNNLSVEQLRQ 92 (118)
T ss_dssp HHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHH
Confidence 456666677777777776654
No 95
>PRK07922 N-acetylglutamate synthase; Validated
Probab=27.51 E-value=64 Score=21.51 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=16.4
Q ss_pred ccHHHHHHHHHHHHHHHhcCCC
Q 046622 2 QGIAKRLVKAALQEAARKREMR 23 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~ 23 (72)
.||++.|++++++.|. ..|.+
T Consensus 85 kGiG~~Ll~~~~~~a~-~~g~~ 105 (169)
T PRK07922 85 RGVGHAIVERLLDVAR-ELGLS 105 (169)
T ss_pred CCHHHHHHHHHHHHHH-HcCCC
Confidence 5999999999888776 45543
No 96
>PF15141 DUF4574: Domain of unknown function (DUF4574)
Probab=27.48 E-value=66 Score=21.14 Aligned_cols=20 Identities=45% Similarity=0.373 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcCCChH
Q 046622 6 KRLVKAALQEAARKREMRYA 25 (72)
Q Consensus 6 krLV~aaL~~AAkk~~m~y~ 25 (72)
+.||=+.|||||.-.+--|.
T Consensus 56 kaL~m~~LqEAA~T~enia~ 75 (84)
T PF15141_consen 56 KALVMQTLQEAAETQENIAR 75 (84)
T ss_pred hHHHHHHHHHHHccCCCeee
Confidence 56888999999986654443
No 97
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=27.30 E-value=56 Score=16.18 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=16.8
Q ss_pred HHHHHHhcCCChHHHhcccCc
Q 046622 13 LQEAARKREMRYADLQKIDKM 33 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I~~G 33 (72)
|..-|++.++++++|.++...
T Consensus 7 l~~IA~~~~~~~~~l~~~N~~ 27 (44)
T TIGR02899 7 LWKIAKKYGVDFDELIQANPQ 27 (44)
T ss_pred HHHHHHHHCcCHHHHHHHhhc
Confidence 556788899999999988653
No 98
>PF10470 AKAP7_RIRII_bdg: PKA-RI-RII subunit binding domain of A-kinase anchor protein; InterPro: IPR019511 This entry represents the RI-RII subunit-binding domain found at the C-terminal of the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA, for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes, by binding to its regulatory subunits, RI and RII, hence being known as a dual-specific AKAP []. The 25 crucial amino acids of RII-binding domains in general form structurally conserved amphipathic helices with unrelated sequences; hydrophobic amino acid residues form the backbone of the interaction and hydrogen bond- and salt-bridge-forming amino acid residues increase the affinity of the interaction []. The nuclear localisation signal-containing domain is found at the N terminus.
Probab=26.95 E-value=64 Score=20.27 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 046622 4 IAKRLVKAALQEAAR 18 (72)
Q Consensus 4 iAkrLV~aaL~~AAk 18 (72)
..||||+.|+.+|-.
T Consensus 12 lSKrlVenAVlkAvQ 26 (61)
T PF10470_consen 12 LSKRLVENAVLKAVQ 26 (61)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999888865
No 99
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=26.65 E-value=70 Score=20.60 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCChHH
Q 046622 8 LVKAALQEAARKREMRYAD 26 (72)
Q Consensus 8 LV~aaL~~AAkk~~m~y~d 26 (72)
-++.||.+|.|+|++.-+.
T Consensus 21 tl~daL~KaLk~R~l~pe~ 39 (74)
T cd01816 21 TLRDALAKALKVRGLQPEC 39 (74)
T ss_pred CHHHHHHHHHHHcCCChhH
Confidence 4789999999999988543
No 100
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=26.62 E-value=49 Score=23.24 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCChHHHhc
Q 046622 12 ALQEAARKREMRYADLQK 29 (72)
Q Consensus 12 aL~~AAkk~~m~y~dL~~ 29 (72)
.+-++|++.||+|+||..
T Consensus 182 ~~p~~~~~~G~sy~~li~ 199 (203)
T PF07478_consen 182 LFPRMAEAAGISYEDLIE 199 (203)
T ss_dssp HHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 356789999999999864
No 101
>TIGR02832 spo_yunB sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect.
Probab=26.54 E-value=62 Score=23.69 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHh---cCCChHHHhcccCcC
Q 046622 5 AKRLVKAALQEAARK---REMRYADLQKIDKMV 34 (72)
Q Consensus 5 AkrLV~aaL~~AAkk---~~m~y~dL~~I~~G~ 34 (72)
||++..++..+|-.+ .+..|+||.++.+..
T Consensus 41 a~~~at~~IN~av~~~~~~~~~y~dlI~i~kd~ 73 (204)
T TIGR02832 41 MNRIATETINKAVTDEVEQGFDYNDLIEIETDE 73 (204)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHEEEEEECC
Confidence 455555666666544 489999999986653
No 102
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=26.15 E-value=63 Score=18.47 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=19.9
Q ss_pred HHHHHHhcCCChHHHhcccCcCc
Q 046622 13 LQEAARKREMRYADLQKIDKMVR 35 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I~~G~R 35 (72)
.++.|++.|++...+-++..|.+
T Consensus 21 ~~~lA~~~gis~~tis~~~~g~~ 43 (78)
T TIGR02607 21 IRALAKALGVSRSTLSRIVNGRR 43 (78)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56789999999999999998875
No 103
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=26.13 E-value=49 Score=20.66 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCChH
Q 046622 9 VKAALQEAARKREMRYA 25 (72)
Q Consensus 9 V~aaL~~AAkk~~m~y~ 25 (72)
..++|.+||++.|+...
T Consensus 2 AAeaL~~aA~~~G~~i~ 18 (88)
T PRK10474 2 AAEALESAAKAKGWEVK 18 (88)
T ss_pred HHHHHHHHHHHCCCeEE
Confidence 46789999999996653
No 104
>PLN02688 pyrroline-5-carboxylate reductase
Probab=25.98 E-value=60 Score=22.73 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCChHHHhcc
Q 046622 8 LVKAALQEAARKREMRYADLQKI 30 (72)
Q Consensus 8 LV~aaL~~AAkk~~m~y~dL~~I 30 (72)
.+=+++.|||.+.|++.++..++
T Consensus 178 ~~~~a~~ea~~~~Gl~~~~a~~~ 200 (266)
T PLN02688 178 LAIEALADGGVAAGLPRDVALSL 200 (266)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 55678999999999999998765
No 105
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=25.95 E-value=53 Score=17.59 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=15.9
Q ss_pred HHHHHhcCCChHHHhcccCcCc
Q 046622 14 QEAARKREMRYADLQKIDKMVR 35 (72)
Q Consensus 14 ~~AAkk~~m~y~dL~~I~~G~R 35 (72)
.+.|++-|++..-+.++..|.+
T Consensus 13 ~~la~~~gis~~~i~~~~~g~~ 34 (55)
T PF01381_consen 13 KELAEKLGISRSTISRIENGKR 34 (55)
T ss_dssp HHHHHHHTS-HHHHHHHHTTSS
T ss_pred HHHHHHhCCCcchhHHHhcCCC
Confidence 5677778888888888888843
No 106
>PRK01346 hypothetical protein; Provisional
Probab=25.88 E-value=63 Score=24.21 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHHHHhcCCChHHHh
Q 046622 2 QGIAKRLVKAALQEAARKREMRYADLQ 28 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~y~dL~ 28 (72)
.||++.|+++++++|. ++|..+.-|.
T Consensus 94 rGig~~Ll~~~l~~a~-~~g~~~~~L~ 119 (411)
T PRK01346 94 RGLLTALMREQLRRIR-ERGEPVAALT 119 (411)
T ss_pred CCHHHHHHHHHHHHHH-HCCCcEEEEE
Confidence 4999999999999975 4677665554
No 107
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=25.74 E-value=54 Score=19.51 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.6
Q ss_pred ccccceEEEEEEecCcccc
Q 046622 37 HFHDDITVIVLFLNHDLIS 55 (72)
Q Consensus 37 ~fHDDITVIVvfLd~~~~~ 55 (72)
.+.|||+|.|+..+.+++.
T Consensus 13 ~Ig~~I~I~Vl~i~~~~Vk 31 (54)
T PF02599_consen 13 VIGDDIEITVLEISGGQVK 31 (54)
T ss_dssp EETTTEEEEEEEEETTEEE
T ss_pred EECCCEEEEEEEEcCCEEE
Confidence 5679999999999876554
No 108
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=25.47 E-value=84 Score=21.66 Aligned_cols=35 Identities=6% Similarity=0.087 Sum_probs=23.5
Q ss_pred CccccceEEEEEEecCcccccCCCCCCCeeeccccC
Q 046622 36 RHFHDDITVIVLFLNHDLISRGTVQDPPLSIRCALQ 71 (72)
Q Consensus 36 R~fHDDITVIVvfLd~~~~~~~~~~~~~~s~rg~~~ 71 (72)
=+|+.++.|.-+.|--+ -.-.+..+..++||+|.+
T Consensus 41 i~f~~~v~i~~l~i~v~-~~DeSYtPs~I~I~~G~~ 75 (131)
T cd08667 41 LKMKPDVVLRHLSIAVA-ATDQSYMPQQVTVSVGRS 75 (131)
T ss_pred EEecCCeEEEEEEEEEc-CCCCCcCCcEEEEEecCC
Confidence 37888888766443332 234677778999999853
No 109
>PRK03624 putative acetyltransferase; Provisional
Probab=25.42 E-value=87 Score=18.43 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.|+++.|++.+.+. |++.+
T Consensus 83 ~Gig~~ll~~~~~~-~~~~~ 101 (140)
T PRK03624 83 RGIGRALVARLEKK-LIARG 101 (140)
T ss_pred CCHHHHHHHHHHHH-HHHCC
Confidence 59999999987665 55555
No 110
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=25.24 E-value=71 Score=19.53 Aligned_cols=25 Identities=12% Similarity=0.389 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhcCCChHHHhcc
Q 046622 6 KRLVKAALQEAARKREMRYADLQKI 30 (72)
Q Consensus 6 krLV~aaL~~AAkk~~m~y~dL~~I 30 (72)
..-|+.++.++-++--+||++|.+.
T Consensus 6 ~~~i~~Li~~gK~~G~lT~~eI~~~ 30 (82)
T PF03979_consen 6 EEAIKKLIEKGKKKGYLTYDEINDA 30 (82)
T ss_dssp HHHHHHHHHHHHHHSS-BHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcCCHHHHHHH
Confidence 3457788888888888999999874
No 111
>PF08681 DUF1778: Protein of unknown function (DUF1778); InterPro: IPR014795 This entry is represented by Vibrio phage ICP1, Orf50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA. ; PDB: 1Y9B_A.
Probab=25.18 E-value=86 Score=19.21 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCChHHHh
Q 046622 9 VKAALQEAARKREMRYADLQ 28 (72)
Q Consensus 9 V~aaL~~AAkk~~m~y~dL~ 28 (72)
.++.+++||.-.|++.++..
T Consensus 10 ~k~li~~AA~~~G~sls~Fi 29 (80)
T PF08681_consen 10 EKELIERAAALSGVSLSDFI 29 (80)
T ss_dssp HHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHH
Confidence 36788999999999998753
No 112
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=25.06 E-value=76 Score=20.70 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=14.6
Q ss_pred ccHHHHHHHHHHHHHHH
Q 046622 2 QGIAKRLVKAALQEAAR 18 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAk 18 (72)
.||++.|++.+++.|..
T Consensus 81 ~GiG~~L~~~l~~~a~~ 97 (157)
T TIGR02406 81 KGLARRLLEALLERVAC 97 (157)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 49999999999998653
No 113
>PRK09266 hypothetical protein; Provisional
Probab=24.92 E-value=42 Score=23.97 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=22.8
Q ss_pred CccHHHHHHHHHHHHH---HHhcCCChHHHhccc
Q 046622 1 MQGIAKRLVKAALQEA---ARKREMRYADLQKID 31 (72)
Q Consensus 1 ~~GiAkrLV~aaL~~A---Akk~~m~y~dL~~I~ 31 (72)
|.||.+++|.+.+++. .+.+.++.+||.+.+
T Consensus 189 L~GItR~~ll~~~~~~g~~v~e~~i~~~eL~~ad 222 (266)
T PRK09266 189 LPGVTMALLQRGLERLGIPQRTRPVTLADLGRFA 222 (266)
T ss_pred cchHHHHHHHHHHHHcCCeeEEEECCHHHHHHhh
Confidence 5799988887654422 556788899998875
No 114
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=24.91 E-value=1.3e+02 Score=16.27 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhcCCChHHHhcccCcCcCccccceEEEEEEecCcccccC
Q 046622 6 KRLVKAALQEAARKREMRYADLQKIDKMVRRHFHDDITVIVLFLNHDLISRG 57 (72)
Q Consensus 6 krLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDDITVIVvfLd~~~~~~~ 57 (72)
++|+++..+-+++..| .-.+|++|++-..+.+..+.+
T Consensus 17 ~~l~~~i~~~l~~~~g---------------~~~~~v~V~i~e~~~~~~~~g 53 (58)
T cd00491 17 RELIERVTEAVSEILG---------------APEATIVVIIDEMPKENWGIG 53 (58)
T ss_pred HHHHHHHHHHHHHHhC---------------cCcccEEEEEEEeCchhceEC
Confidence 4556655555555555 226789988888777655543
No 115
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=24.56 E-value=91 Score=21.55 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCChHHHhcccCcCcCccccc-eEEEEEEecC
Q 046622 7 RLVKAALQEAARKREMRYADLQKIDKMVRRHFHDD-ITVIVLFLNH 51 (72)
Q Consensus 7 rLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDD-ITVIVvfLd~ 51 (72)
..+++++.+||++.|++.-+... -+|-.. ||.+++.-++
T Consensus 37 ~~l~~~l~~Aa~~~gativ~~~~------h~F~P~GvTgv~lLaES 76 (139)
T PRK02770 37 AFLRTTLTEAAKRAGATLLNLIT------HRFEPQGVTALALLAES 76 (139)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEe------EEcCCCeEEEEEEeccc
Confidence 46899999999999988544322 234333 7888887665
No 116
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=24.45 E-value=94 Score=18.81 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.|.|+.|+.+..++++. +|
T Consensus 36 rGlg~~lv~~l~~~~~~-~g 54 (86)
T PF08445_consen 36 RGLGSALVAALARELLE-RG 54 (86)
T ss_dssp SSHHHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHHHHh-CC
Confidence 58999999998888777 44
No 117
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=24.30 E-value=80 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhcCCChHHHh
Q 046622 6 KRLVKAALQEAARKREMRYADLQ 28 (72)
Q Consensus 6 krLV~aaL~~AAkk~~m~y~dL~ 28 (72)
++|.++|++.|-+|.+++-+|+-
T Consensus 52 ~~m~~~A~~~al~Ka~l~~~dId 74 (329)
T PF07451_consen 52 SKMQKEAVELALKKAGLKKEDID 74 (329)
T ss_dssp HHHHHHHHHHHHHHTT--GGG-S
T ss_pred HHHHHHHHHHHHHHcCCCHHHCe
Confidence 68999999999999999888764
No 118
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=24.17 E-value=63 Score=18.02 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=14.3
Q ss_pred HHHHHHhcCCChHHHhcc
Q 046622 13 LQEAARKREMRYADLQKI 30 (72)
Q Consensus 13 L~~AAkk~~m~y~dL~~I 30 (72)
+.++|+.-|++.+.|...
T Consensus 3 ~~eva~~~gvs~~tlr~~ 20 (70)
T smart00422 3 IGEVAKLAGVSVRTLRYY 20 (70)
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 468889999998888754
No 119
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=24.04 E-value=63 Score=23.24 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCChHHHhc
Q 046622 12 ALQEAARKREMRYADLQK 29 (72)
Q Consensus 12 aL~~AAkk~~m~y~dL~~ 29 (72)
-+-.+|+..||+|.||..
T Consensus 272 ~~~~~~~~~G~~~~~li~ 289 (299)
T PRK14571 272 DLPASAKAGGIEFEELVD 289 (299)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 456788999999999864
No 120
>PRK10514 putative acetyltransferase; Provisional
Probab=23.40 E-value=70 Score=19.65 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.6
Q ss_pred ccHHHHHHHHHHHHH
Q 046622 2 QGIAKRLVKAALQEA 16 (72)
Q Consensus 2 ~GiAkrLV~aaL~~A 16 (72)
.|+|+.|++.+.++|
T Consensus 84 kGig~~Ll~~~~~~~ 98 (145)
T PRK10514 84 CGVGRMLVEHALSLH 98 (145)
T ss_pred CCHHHHHHHHHHHhc
Confidence 499999999998763
No 121
>PRK05185 rplT 50S ribosomal protein L20; Provisional
Probab=23.06 E-value=1.2e+02 Score=20.48 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCChHHHhc
Q 046622 11 AALQEAARKREMRYADLQK 29 (72)
Q Consensus 11 aaL~~AAkk~~m~y~dL~~ 29 (72)
+=+.-||+..||+|+.++.
T Consensus 62 ~RINAa~R~~g~~Ys~fi~ 80 (114)
T PRK05185 62 ARINAAARQNGLSYSRFIN 80 (114)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 3456688899999998875
No 122
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=23.04 E-value=87 Score=19.38 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCChHHHhc
Q 046622 11 AALQEAARKREMRYADLQK 29 (72)
Q Consensus 11 aaL~~AAkk~~m~y~dL~~ 29 (72)
.+|.+.|...||+...|-.
T Consensus 24 ~~L~eiA~~~g~s~~~li~ 42 (67)
T PF13467_consen 24 DALEEIAAREGLSLNALIA 42 (67)
T ss_dssp HHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 6899999999999998753
No 123
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=22.70 E-value=97 Score=21.43 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHhcccCcCcCccccc-eEEEEEEecC
Q 046622 7 RLVKAALQEAARKREMRYADLQKIDKMVRRHFHDD-ITVIVLFLNH 51 (72)
Q Consensus 7 rLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fHDD-ITVIVvfLd~ 51 (72)
..+++++.+||+..|++.-+...- +|-.. ||.+|+.-++
T Consensus 24 e~l~~~l~~Aa~~~gatil~~~~h------~F~P~GvTgv~lLaES 63 (139)
T PRK04025 24 DRIREIFLEAAKRGNMEVKASYFF------KFSPTGVSGVVIVAES 63 (139)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEE------EcCCCcEEEEEEeccc
Confidence 468999999999999885443322 34333 8888887665
No 124
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=22.60 E-value=1.2e+02 Score=19.64 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHHHHHHHhcC
Q 046622 2 QGIAKRLVKAALQEAARKRE 21 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~ 21 (72)
.|+|..++++++..|.+..+
T Consensus 107 ~G~~tea~~~l~~~~~~~~~ 126 (179)
T PRK10151 107 QGIISQALQALIHHYAQSGE 126 (179)
T ss_pred CcHHHHHHHHHHHHHHhhCC
Confidence 58999999999888876544
No 125
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=22.23 E-value=42 Score=24.19 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=16.2
Q ss_pred HHHhcCCChHHHhcccCcCcCccccceE
Q 046622 16 AARKREMRYADLQKIDKMVRRHFHDDIT 43 (72)
Q Consensus 16 AAkk~~m~y~dL~~I~~G~RR~fHDDIT 43 (72)
.-|++||.|.|..++ ++|||..
T Consensus 44 ~lkRAGlDY~~~~~l------~~h~s~e 65 (155)
T COG0219 44 RLKRAGLDYHEKASL------TEHDSLE 65 (155)
T ss_pred hhhhcccchHhhcce------EEeCCHH
Confidence 346679999998888 6676653
No 126
>PTZ00030 60S ribosomal protein L20; Provisional
Probab=22.18 E-value=1.3e+02 Score=20.69 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCChHHHhc
Q 046622 11 AALQEAARKREMRYADLQK 29 (72)
Q Consensus 11 aaL~~AAkk~~m~y~dL~~ 29 (72)
+=+.-||+..||+|+.++.
T Consensus 54 ~RINAa~R~~g~~Ys~fi~ 72 (121)
T PTZ00030 54 QTINAATREHNMTYSRFIN 72 (121)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 3456688999999998875
No 127
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.08 E-value=76 Score=19.86 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=14.1
Q ss_pred ccccceEEEEEEecCcccc
Q 046622 37 HFHDDITVIVLFLNHDLIS 55 (72)
Q Consensus 37 ~fHDDITVIVvfLd~~~~~ 55 (72)
|=||||+|=.+.|-..-+.
T Consensus 3 ~~hddI~VG~itl~ys~~~ 21 (60)
T PF07026_consen 3 HPHDDIRVGTITLPYSHFK 21 (60)
T ss_pred CCCCceEEeEEEEEEEecc
Confidence 5699999988887754333
No 128
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=22.05 E-value=1.3e+02 Score=24.96 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=14.8
Q ss_pred cceEEEEEEecCccccc
Q 046622 40 DDITVIVLFLNHDLISR 56 (72)
Q Consensus 40 DDITVIVvfLd~~~~~~ 56 (72)
.|++|+-||.|+.|++.
T Consensus 46 ~d~vVvSIFVNP~QF~~ 62 (512)
T PRK13477 46 NDVVLVSIFVNPLQFGP 62 (512)
T ss_pred CCEEEEEEccCcccCCC
Confidence 58999999999988865
No 129
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=22.05 E-value=96 Score=18.06 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCChHHHhcc
Q 046622 10 KAALQEAARKREMRYADLQKI 30 (72)
Q Consensus 10 ~aaL~~AAkk~~m~y~dL~~I 30 (72)
-..+++.|++.+|+.++..++
T Consensus 5 v~~Ie~~A~~~~~s~~ea~~~ 25 (62)
T PF12668_consen 5 VFCIEEFAKKLNISGEEAYNY 25 (62)
T ss_pred HHHHHHHHHHHCcCHHHHHHH
Confidence 357889999999999987654
No 130
>PRK09831 putative acyltransferase; Provisional
Probab=21.97 E-value=82 Score=19.85 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=13.0
Q ss_pred ccHHHHHHHHHHHHH
Q 046622 2 QGIAKRLVKAALQEA 16 (72)
Q Consensus 2 ~GiAkrLV~aaL~~A 16 (72)
.||++.|++++++.|
T Consensus 87 ~GiG~~Ll~~~~~~~ 101 (147)
T PRK09831 87 RGVASALLKPLIKSE 101 (147)
T ss_pred CCHHHHHHHHHHHHh
Confidence 499999999999875
No 131
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=21.97 E-value=1.4e+02 Score=23.56 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.5
Q ss_pred ccccceEEEEEEecCccccc
Q 046622 37 HFHDDITVIVLFLNHDLISR 56 (72)
Q Consensus 37 ~fHDDITVIVvfLd~~~~~~ 56 (72)
+-+-|++|+.||.|.-|+..
T Consensus 45 ~~~~d~VVVSIFVNP~QFg~ 64 (285)
T COG0414 45 KKENDVVVVSIFVNPLQFGP 64 (285)
T ss_pred hhcCCeEEEEEEeChhhcCC
Confidence 35789999999999987754
No 132
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=21.90 E-value=1.3e+02 Score=19.18 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcCCChHH
Q 046622 8 LVKAALQEAARKREMRYAD 26 (72)
Q Consensus 8 LV~aaL~~AAkk~~m~y~d 26 (72)
+-+.+|..+|++.|++.+|
T Consensus 84 I~~~ll~q~A~~~gi~vsd 102 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSD 102 (154)
T ss_dssp HHHHHHHHHHHHTT----H
T ss_pred HHHHHHHHHHHHcCCCCCH
Confidence 4456788899999988754
No 133
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=21.61 E-value=1e+02 Score=20.83 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCChHHHhcccCcCcCccc--cceEEEEEEecC
Q 046622 7 RLVKAALQEAARKREMRYADLQKIDKMVRRHFH--DDITVIVLFLNH 51 (72)
Q Consensus 7 rLV~aaL~~AAkk~~m~y~dL~~I~~G~RR~fH--DDITVIVvfLd~ 51 (72)
..+++++.+||+..|++.-+...- +|. .-||.+++.-++
T Consensus 35 ~~l~~~l~~aa~~~g~til~~~~h------~F~p~~GvT~v~lLaES 75 (127)
T PRK00458 35 ERLEQIVKEAAKIANMTLLDIKSW------KFGKKGGVSVIALVLES 75 (127)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEE------ECCCCCCEEEEEEeccc
Confidence 468999999999999886444332 442 369998887665
No 134
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=21.58 E-value=1.1e+02 Score=20.15 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHHHHHHHhcCC
Q 046622 2 QGIAKRLVKAALQEAARKREM 22 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m 22 (72)
.|+|..+++++++.|....++
T Consensus 118 ~G~~~ea~~~ll~~~~~~l~l 138 (194)
T PRK10809 118 QGLMFEALQAAIRYMQRQQHM 138 (194)
T ss_pred CCHHHHHHHHHHHHHHhcCCc
Confidence 488999999988877665454
No 135
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=21.49 E-value=55 Score=17.13 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=8.2
Q ss_pred CChHHHhccc
Q 046622 22 MRYADLQKID 31 (72)
Q Consensus 22 m~y~dL~~I~ 31 (72)
=+++||+++|
T Consensus 8 as~eeL~~lp 17 (30)
T PF00633_consen 8 ASIEELMKLP 17 (30)
T ss_dssp SSHHHHHTST
T ss_pred CCHHHHHhCC
Confidence 4788999987
No 136
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=21.36 E-value=76 Score=18.21 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCChHHHh
Q 046622 12 ALQEAARKREMRYADLQ 28 (72)
Q Consensus 12 aL~~AAkk~~m~y~dL~ 28 (72)
-|++||+..|++.++|.
T Consensus 43 Tl~~aa~~~gid~~~li 59 (59)
T PF08984_consen 43 TLEQAAKMHGIDLEKLI 59 (59)
T ss_dssp BHHHHHHHHT--HHHHH
T ss_pred CHHHHHHHcCCCHHHhC
Confidence 37889999999888763
No 137
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=21.22 E-value=63 Score=19.44 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=13.7
Q ss_pred HHHHHhcCCChHHHhcccCcCcCcc
Q 046622 14 QEAARKREMRYADLQKIDKMVRRHF 38 (72)
Q Consensus 14 ~~AAkk~~m~y~dL~~I~~G~RR~f 38 (72)
.++|+.-|++-..+-+|..|...+|
T Consensus 35 ~e~A~~lgisq~~vS~l~~g~~~~~ 59 (80)
T PF13744_consen 35 AELAERLGISQPRVSRLENGKIDDF 59 (80)
T ss_dssp HHHHHHHTS-HHHHHHHHTT-GCC-
T ss_pred HHHHHHHCCChhHHHHHHcCcccCC
Confidence 4556666666666666667665544
No 138
>PF05821 NDUF_B8: NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8); InterPro: IPR008699 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several eukaryotic NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI) proteins. NADH:ubiquinone oxidoreductase (complex I) is an extremely complicated multiprotein complex located in the inner mitochondrial membrane. Its main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. Human complex I appears to consist of 41 subunits [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=21.20 E-value=73 Score=22.99 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=15.9
Q ss_pred HHHHHhcCCChHHHhcccC
Q 046622 14 QEAARKREMRYADLQKIDK 32 (72)
Q Consensus 14 ~~AAkk~~m~y~dL~~I~~ 32 (72)
..||||.+|+-+|-.-.|.
T Consensus 44 ~aaAkKY~l~pedY~P~pD 62 (179)
T PF05821_consen 44 AAAAKKYGLRPEDYEPYPD 62 (179)
T ss_pred HHHHHHcCCCHHHcCCCCC
Confidence 4689999999999887763
No 139
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=21.14 E-value=1.3e+02 Score=20.59 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=21.9
Q ss_pred ccccc--eEEEEEEecCcccccCCCCCCCeeeccccC
Q 046622 37 HFHDD--ITVIVLFLNHDLISRGTVQDPPLSIRCALQ 71 (72)
Q Consensus 37 ~fHDD--ITVIVvfLd~~~~~~~~~~~~~~s~rg~~~ 71 (72)
+|+.. |.-+-+|+|. .-.+..+..++|++|-+
T Consensus 42 ~f~k~v~i~~l~i~~~~---~DeSYtP~~I~V~~G~~ 75 (129)
T cd08159 42 FMKKDVLIRVLAIFVDM---ADSSYMPSLVVVYGGHS 75 (129)
T ss_pred EEcCCcEEEEEEEEecC---CCCCcCCcEEEEEecCC
Confidence 34444 4556667776 45777788999999854
No 140
>PRK12404 stage V sporulation protein AD; Provisional
Probab=21.08 E-value=1.1e+02 Score=24.49 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhcCCChHHHhcc
Q 046622 6 KRLVKAALQEAARKREMRYADLQKI 30 (72)
Q Consensus 6 krLV~aaL~~AAkk~~m~y~dL~~I 30 (72)
+.|..+|.++|-+|+|++.+|+.-+
T Consensus 55 ~~L~~EA~~~AL~kAGI~~~DID~i 79 (334)
T PRK12404 55 RKLLEEACSRAIEKAKLRKEDIQFF 79 (334)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 5689999999999999998876544
No 141
>PF00547 Urease_gamma: Urease, gamma subunit enzyme!; InterPro: IPR002026 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plantseeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta IPR002019 from INTERPRO and gamma, described in this entry). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3QGA_G 3QGK_M 1E9Y_A 1E9Z_A 1FWF_A 1A5L_A 1EJW_A 1EJR_A 1FWH_A 1EJS_A ....
Probab=21.06 E-value=1.5e+02 Score=20.09 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHhcccCc
Q 046622 5 AKRLVKAALQEAARKREMRYADLQKIDKM 33 (72)
Q Consensus 5 AkrLV~aaL~~AAkk~~m~y~dL~~I~~G 33 (72)
|-.|+...+.|.||+ |.++.||++.-+-
T Consensus 35 AvAlI~~~v~E~aRd-G~svaelm~~g~~ 62 (99)
T PF00547_consen 35 AVALISDEVLEGARD-GKSVAELMSLGRT 62 (99)
T ss_dssp HHHHHHHHHHHHHHH-TS-HHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhC-CCcHHHHHHHHHh
Confidence 456888999999995 5999999987543
No 142
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=20.99 E-value=88 Score=22.19 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCChHHHh--cc-cCcCcCccccceEEEEEEecCc
Q 046622 8 LVKAALQEAARKREMRYADLQ--KI-DKMVRRHFHDDITVIVLFLNHD 52 (72)
Q Consensus 8 LV~aaL~~AAkk~~m~y~dL~--~I-~~G~RR~fHDDITVIVvfLd~~ 52 (72)
.+++.+.+||++.||+.-+.. ++ |+| +|+||+-.++.
T Consensus 35 ~l~~i~~eAa~~~gati~~~~~~~f~p~G--------vSgvvliaESH 74 (136)
T COG1586 35 RLEEILLEAAKIAGATILNIAFHKFSPQG--------VSGVVLIAESH 74 (136)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeEEecCCC--------eEEEEEEEeee
Confidence 478899999999999754432 22 444 79999988863
No 143
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=20.87 E-value=96 Score=19.27 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHhcccCcCcC
Q 046622 4 IAKRLVKAALQEAARKREMRYADLQKIDKMVRR 36 (72)
Q Consensus 4 iAkrLV~aaL~~AAkk~~m~y~dL~~I~~G~RR 36 (72)
||..|=.. -.+=|++-|+++.||..|..-..+
T Consensus 10 ia~~LG~d-Wk~LAr~Lg~se~dI~~i~~~~~~ 41 (84)
T cd08804 10 IADHLGFS-WTELARELDFTEEQIHQIRIENPN 41 (84)
T ss_pred HHHHHhhh-HHHHHHHcCCCHHHHHHHHHHCcc
Confidence 34443333 567899999999999998765443
No 144
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=20.82 E-value=64 Score=18.12 Aligned_cols=16 Identities=6% Similarity=0.291 Sum_probs=11.8
Q ss_pred HHHHhcCCChHHHhcc
Q 046622 15 EAARKREMRYADLQKI 30 (72)
Q Consensus 15 ~AAkk~~m~y~dL~~I 30 (72)
..+|..||+.+|++.+
T Consensus 8 ~~~r~lGfsL~eI~~~ 23 (65)
T PF09278_consen 8 RRLRELGFSLEEIREL 23 (65)
T ss_dssp HHHHHTT--HHHHHHH
T ss_pred HHHHHcCCCHHHHHHH
Confidence 5689999999999875
No 145
>PF06169 DUF982: Protein of unknown function (DUF982); InterPro: IPR010385 This family consists of several hypothetical proteins from Rhizobium meliloti (Sinorhizobium meliloti), Rhizobium loti (Mesorhizobium loti) and Agrobacterium tumefaciens. The function of this family is unknown.; PDB: 2KPQ_A.
Probab=20.49 E-value=81 Score=19.21 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcCCChHH
Q 046622 9 VKAALQEAARKREMRYAD 26 (72)
Q Consensus 9 V~aaL~~AAkk~~m~y~d 26 (72)
.++|+-.||+++|+...|
T Consensus 59 AR~AFi~AA~eAgil~~~ 76 (76)
T PF06169_consen 59 ARRAFIAAAREAGILVPD 76 (76)
T ss_dssp HHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 467888999999987654
No 146
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
Probab=20.44 E-value=1.3e+02 Score=21.22 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=22.0
Q ss_pred ccHHHHHHH--HHHHHHHHhcCCChHHHhccc
Q 046622 2 QGIAKRLVK--AALQEAARKREMRYADLQKID 31 (72)
Q Consensus 2 ~GiAkrLV~--aaL~~AAkk~~m~y~dL~~I~ 31 (72)
-||||.|++ ..|..+-++.+|=..|=...+
T Consensus 81 ~gIaRAL~~~~~~lr~~lk~~g~LtrD~R~~E 112 (130)
T COG0103 81 HGIARALVEYDPELRPALKKAGLLTRDPRRVE 112 (130)
T ss_pred HHHHHHHHHHCHHHHHHHHHCCCcccCccccc
Confidence 389999987 467788888887666655554
No 147
>PHA02448 hypothetical protein
Probab=20.35 E-value=79 Score=23.31 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCCChHHHhc
Q 046622 8 LVKAALQEAARKREMRYADLQK 29 (72)
Q Consensus 8 LV~aaL~~AAkk~~m~y~dL~~ 29 (72)
-|++|+-.|-+++||+|.--+.
T Consensus 96 avkeaigdalrnagmrfgaal~ 117 (192)
T PHA02448 96 AVKEAIGDALRNAGMRFGAALD 117 (192)
T ss_pred HHHHHHHHHHHhccchhhHHHH
Confidence 4899999999999999976544
No 148
>CHL00068 rpl20 ribosomal protein L20
Probab=20.18 E-value=1.5e+02 Score=20.12 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCChHHHhc
Q 046622 12 ALQEAARKREMRYADLQK 29 (72)
Q Consensus 12 aL~~AAkk~~m~y~dL~~ 29 (72)
=+.-||+..||+|+.++.
T Consensus 64 RINAa~R~~glsYs~fi~ 81 (115)
T CHL00068 64 RINAAIRENGVSYSKFIH 81 (115)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 345588999999998764
No 149
>PF14174 YycC: YycC-like protein
Probab=20.16 E-value=86 Score=19.22 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=16.0
Q ss_pred HHHHHhcCCChHHHhcccC
Q 046622 14 QEAARKREMRYADLQKIDK 32 (72)
Q Consensus 14 ~~AAkk~~m~y~dL~~I~~ 32 (72)
++-|++-|+..+.|+.+|+
T Consensus 12 ~kLs~~L~vPlE~lMHmPq 30 (53)
T PF14174_consen 12 VKLSKKLGVPLEQLMHMPQ 30 (53)
T ss_pred HHHHHHHCCcHHHHhcCcH
Confidence 3457889999999999986
No 150
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=20.10 E-value=1.5e+02 Score=18.28 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=16.2
Q ss_pred ccHHHHHHHHHHHHHHHhcCCC
Q 046622 2 QGIAKRLVKAALQEAARKREMR 23 (72)
Q Consensus 2 ~GiAkrLV~aaL~~AAkk~~m~ 23 (72)
.|+++.|++.+++.|=++.|+.
T Consensus 91 ~gig~~l~~~l~~~af~~~~~~ 112 (155)
T PF13420_consen 91 KGIGRKLLDELIEYAFKELGIH 112 (155)
T ss_dssp SSHHHHHHHHHHHHH-HHTT-C
T ss_pred CcHHHHHHHHHHHHhhhccCeE
Confidence 5899999999996664777654
Done!