Query 046623
Match_columns 218
No_of_seqs 142 out of 1772
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4123 Predicted O-methyltran 99.9 5.8E-20 1.3E-24 145.3 17.0 178 10-207 15-213 (248)
2 PF10294 Methyltransf_16: Puta 99.8 8.7E-20 1.9E-24 139.2 12.3 145 30-176 15-170 (173)
3 PF05175 MTS: Methyltransferas 99.8 7.9E-19 1.7E-23 133.6 16.2 146 12-176 1-153 (170)
4 COG2813 RsmC 16S RNA G1207 met 99.8 3.9E-17 8.5E-22 131.8 17.4 147 10-176 126-279 (300)
5 PRK15001 SAM-dependent 23S rib 99.8 8.2E-17 1.8E-21 135.8 18.8 141 5-161 191-340 (378)
6 TIGR00537 hemK_rel_arch HemK-r 99.7 1.1E-15 2.4E-20 117.2 17.6 136 38-188 7-164 (179)
7 PRK14967 putative methyltransf 99.7 1E-15 2.2E-20 121.4 17.9 154 13-187 7-182 (223)
8 COG2264 PrmA Ribosomal protein 99.7 3.3E-16 7.2E-21 127.1 14.3 145 32-188 142-287 (300)
9 COG2227 UbiG 2-polyprenyl-3-me 99.7 6.6E-17 1.4E-21 126.1 9.4 106 52-166 58-164 (243)
10 PF06325 PrmA: Ribosomal prote 99.7 2.5E-16 5.4E-21 128.8 13.0 141 31-187 140-281 (295)
11 PRK00107 gidB 16S rRNA methylt 99.7 2.4E-15 5.2E-20 115.8 17.0 136 53-202 45-182 (187)
12 TIGR00452 methyltransferase, p 99.7 2.7E-15 5.9E-20 124.0 17.4 147 35-187 103-271 (314)
13 PF12847 Methyltransf_18: Meth 99.7 2.4E-16 5.2E-21 111.5 9.6 100 53-156 1-106 (112)
14 PLN02396 hexaprenyldihydroxybe 99.7 7.8E-16 1.7E-20 127.7 14.0 131 52-187 130-287 (322)
15 PRK11036 putative S-adenosyl-L 99.7 1.5E-15 3.2E-20 122.9 15.1 105 52-160 43-148 (255)
16 COG2226 UbiE Methylase involve 99.7 6E-16 1.3E-20 122.4 11.4 103 53-160 51-155 (238)
17 PLN02244 tocopherol O-methyltr 99.7 5.8E-15 1.3E-19 124.1 17.8 105 52-160 117-222 (340)
18 PRK09489 rsmC 16S ribosomal RN 99.7 2.5E-15 5.4E-20 125.9 14.9 132 12-162 166-304 (342)
19 PRK15068 tRNA mo(5)U34 methylt 99.7 6.7E-15 1.4E-19 122.6 17.2 146 36-187 105-272 (322)
20 TIGR00138 gidB 16S rRNA methyl 99.7 4.3E-15 9.4E-20 114.0 14.8 131 52-193 41-173 (181)
21 COG2890 HemK Methylase of poly 99.6 2.4E-14 5.2E-19 117.0 18.8 151 7-182 77-255 (280)
22 PF13847 Methyltransf_31: Meth 99.6 3.5E-15 7.5E-20 111.5 11.6 104 53-160 3-109 (152)
23 PRK11207 tellurite resistance 99.6 1.9E-14 4.2E-19 112.0 16.1 102 52-160 29-133 (197)
24 COG2230 Cfa Cyclopropane fatty 99.6 1.4E-14 3E-19 116.8 15.2 110 49-165 68-180 (283)
25 PF08241 Methyltransf_11: Meth 99.6 1.5E-15 3.3E-20 103.7 8.2 93 58-158 1-94 (95)
26 PLN02233 ubiquinone biosynthes 99.6 1.4E-14 3.1E-19 117.4 15.2 105 52-160 72-181 (261)
27 TIGR02752 MenG_heptapren 2-hep 99.6 3.7E-14 7.9E-19 113.0 17.3 104 52-160 44-150 (231)
28 TIGR00406 prmA ribosomal prote 99.6 1.8E-14 3.9E-19 118.5 15.3 139 35-187 142-281 (288)
29 PRK14968 putative methyltransf 99.6 5.5E-14 1.2E-18 108.3 17.1 140 37-188 10-172 (188)
30 PF02353 CMAS: Mycolic acid cy 99.6 3.2E-14 6.9E-19 115.8 16.2 104 49-160 58-165 (273)
31 PF01209 Ubie_methyltran: ubiE 99.6 6.2E-15 1.3E-19 117.4 11.5 108 52-164 46-156 (233)
32 PF13659 Methyltransf_26: Meth 99.6 2E-15 4.3E-20 107.6 7.2 106 54-161 1-115 (117)
33 TIGR00477 tehB tellurite resis 99.6 1.9E-14 4.1E-19 111.9 12.8 101 52-160 29-132 (195)
34 smart00828 PKS_MT Methyltransf 99.6 4.1E-14 8.8E-19 112.2 15.0 128 55-187 1-142 (224)
35 PRK00517 prmA ribosomal protei 99.6 4E-14 8.6E-19 114.2 15.1 134 35-187 102-236 (250)
36 PTZ00098 phosphoethanolamine N 99.6 5.5E-14 1.2E-18 114.2 15.9 112 42-160 41-155 (263)
37 TIGR03533 L3_gln_methyl protei 99.6 2E-13 4.4E-18 111.9 18.8 125 53-187 121-272 (284)
38 PRK14966 unknown domain/N5-glu 99.6 3.4E-13 7.4E-18 114.4 20.3 141 37-187 236-403 (423)
39 PRK00216 ubiE ubiquinone/menaq 99.6 3.5E-13 7.5E-18 107.5 18.6 105 52-160 50-157 (239)
40 KOG1270 Methyltransferases [Co 99.6 4.1E-15 8.8E-20 117.1 7.1 98 54-159 90-193 (282)
41 TIGR00536 hemK_fam HemK family 99.6 8.9E-13 1.9E-17 108.3 20.7 124 55-187 116-267 (284)
42 PF08003 Methyltransf_9: Prote 99.6 2.2E-13 4.7E-18 110.2 16.3 146 36-187 98-265 (315)
43 TIGR03704 PrmC_rel_meth putati 99.6 2.8E-13 6E-18 109.2 16.9 140 38-187 69-238 (251)
44 PRK11783 rlmL 23S rRNA m(2)G24 99.6 9.7E-14 2.1E-18 126.6 15.6 148 52-206 537-701 (702)
45 PRK00377 cbiT cobalt-precorrin 99.6 4.5E-13 9.8E-18 104.4 17.2 132 50-190 37-171 (198)
46 COG2263 Predicted RNA methylas 99.6 2.5E-13 5.3E-18 102.4 14.8 131 41-187 33-166 (198)
47 TIGR03534 RF_mod_PrmC protein- 99.6 1.9E-13 4.2E-18 110.0 15.4 141 37-187 71-239 (251)
48 TIGR01177 conserved hypothetic 99.6 8.4E-14 1.8E-18 116.6 13.7 136 39-187 167-313 (329)
49 PLN02336 phosphoethanolamine N 99.6 1.7E-13 3.7E-18 120.2 16.1 102 52-159 265-367 (475)
50 PLN02490 MPBQ/MSBQ methyltrans 99.5 3.3E-13 7.3E-18 112.5 16.5 128 52-187 112-254 (340)
51 PRK11805 N5-glutamine S-adenos 99.5 6.7E-13 1.5E-17 109.9 18.1 123 55-187 135-284 (307)
52 PRK11873 arsM arsenite S-adeno 99.5 2.1E-13 4.6E-18 111.3 14.9 103 52-159 76-181 (272)
53 KOG3191 Predicted N6-DNA-methy 99.5 5.1E-13 1.1E-17 99.7 15.0 167 17-206 14-208 (209)
54 PRK15128 23S rRNA m(5)C1962 me 99.5 9.1E-14 2E-18 118.6 12.5 105 52-156 219-334 (396)
55 PRK01544 bifunctional N5-gluta 99.5 6E-13 1.3E-17 117.1 17.9 125 54-187 139-291 (506)
56 PRK14103 trans-aconitate 2-met 99.5 1.8E-13 3.9E-18 110.7 13.3 96 51-159 27-124 (255)
57 PRK00121 trmB tRNA (guanine-N( 99.5 1.3E-13 2.8E-18 107.7 11.8 127 53-185 40-177 (202)
58 PRK13168 rumA 23S rRNA m(5)U19 99.5 8.5E-13 1.9E-17 114.7 18.1 158 39-206 282-442 (443)
59 PRK09328 N5-glutamine S-adenos 99.5 2.6E-12 5.7E-17 104.9 19.9 140 38-187 92-260 (275)
60 PRK10258 biotin biosynthesis p 99.5 2.9E-13 6.3E-18 109.2 13.8 97 52-159 41-138 (251)
61 PRK08287 cobalt-precorrin-6Y C 99.5 1.1E-12 2.5E-17 101.2 16.4 123 52-187 30-154 (187)
62 KOG1271 Methyltransferases [Ge 99.5 3.7E-13 7.9E-18 100.6 12.7 142 37-187 46-203 (227)
63 PRK12335 tellurite resistance 99.5 1.9E-13 4.1E-18 112.4 12.3 102 52-161 119-223 (287)
64 COG2242 CobL Precorrin-6B meth 99.5 2E-12 4.3E-17 97.8 16.7 127 51-189 32-161 (187)
65 PF03848 TehB: Tellurite resis 99.5 2.6E-13 5.6E-18 104.2 12.0 105 50-162 27-134 (192)
66 COG3897 Predicted methyltransf 99.5 7.6E-14 1.6E-18 105.4 8.5 128 31-169 56-185 (218)
67 PF13489 Methyltransf_23: Meth 99.5 3.7E-13 8E-18 100.8 12.3 95 51-161 20-115 (161)
68 PRK01683 trans-aconitate 2-met 99.5 4.3E-13 9.3E-18 108.6 13.3 98 51-159 29-128 (258)
69 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.5E-13 1.4E-17 107.0 14.2 102 52-159 55-162 (247)
70 TIGR02469 CbiT precorrin-6Y C5 99.5 2.4E-12 5.1E-17 92.3 14.5 100 52-158 18-119 (124)
71 PF08242 Methyltransf_12: Meth 99.5 1.2E-14 2.7E-19 100.5 2.4 95 58-155 1-97 (99)
72 PRK14901 16S rRNA methyltransf 99.5 3.4E-12 7.4E-17 110.7 17.1 154 52-206 251-432 (434)
73 PRK10901 16S rRNA methyltransf 99.5 6.2E-12 1.3E-16 108.9 18.2 131 52-186 243-398 (427)
74 PRK13944 protein-L-isoaspartat 99.5 1.7E-12 3.7E-17 101.7 13.4 98 52-159 71-171 (205)
75 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 5.1E-12 1.1E-16 99.7 15.8 102 52-160 38-142 (223)
76 KOG1499 Protein arginine N-met 99.5 1.9E-13 4.1E-18 112.0 7.6 101 51-155 58-161 (346)
77 TIGR02072 BioC biotin biosynth 99.5 2.1E-12 4.6E-17 102.9 13.6 98 52-158 33-132 (240)
78 COG1092 Predicted SAM-dependen 99.4 1.2E-12 2.7E-17 110.5 12.2 109 52-160 216-335 (393)
79 PRK08317 hypothetical protein; 99.4 3.1E-12 6.8E-17 101.8 13.9 104 51-160 17-123 (241)
80 TIGR00740 methyltransferase, p 99.4 4.4E-12 9.5E-17 101.6 14.7 99 52-156 52-156 (239)
81 KOG1540 Ubiquinone biosynthesi 99.4 3.7E-12 8.1E-17 100.0 13.3 129 52-187 99-237 (296)
82 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.8E-12 4E-17 100.7 11.7 129 53-186 16-155 (194)
83 PRK03522 rumB 23S rRNA methylu 99.4 1.2E-11 2.5E-16 103.1 17.3 141 52-206 172-314 (315)
84 PF03602 Cons_hypoth95: Conser 99.4 1.3E-13 2.9E-18 105.7 5.3 132 32-166 18-156 (183)
85 TIGR00095 RNA methyltransferas 99.4 3.3E-12 7.2E-17 98.7 12.9 125 34-162 28-158 (189)
86 PRK10909 rsmD 16S rRNA m(2)G96 99.4 3.3E-12 7.2E-17 99.2 12.9 122 36-164 34-160 (199)
87 COG2519 GCD14 tRNA(1-methylade 99.4 6.8E-12 1.5E-16 98.9 14.7 123 52-187 93-218 (256)
88 PRK14902 16S rRNA methyltransf 99.4 1.4E-11 3.1E-16 107.2 18.1 132 52-187 249-406 (444)
89 TIGR03840 TMPT_Se_Te thiopurin 99.4 7.9E-12 1.7E-16 98.3 14.9 145 38-187 19-185 (213)
90 PLN02672 methionine S-methyltr 99.4 6.3E-12 1.4E-16 117.6 16.4 173 14-204 88-320 (1082)
91 PF13649 Methyltransf_25: Meth 99.4 2.9E-13 6.3E-18 94.1 5.8 93 57-155 1-101 (101)
92 PRK05134 bifunctional 3-demeth 99.4 1.2E-11 2.6E-16 98.7 15.8 102 51-158 46-148 (233)
93 TIGR02085 meth_trns_rumB 23S r 99.4 1.7E-11 3.6E-16 104.4 17.4 140 52-205 232-373 (374)
94 TIGR00080 pimt protein-L-isoas 99.4 5.6E-12 1.2E-16 99.5 13.5 99 51-160 75-176 (215)
95 PLN03075 nicotianamine synthas 99.4 4.6E-12 1E-16 103.3 13.0 129 53-187 123-258 (296)
96 PRK04266 fibrillarin; Provisio 99.4 7.3E-11 1.6E-15 93.6 19.5 131 50-187 69-208 (226)
97 KOG2904 Predicted methyltransf 99.4 1.9E-11 4.2E-16 96.9 16.0 154 11-176 113-298 (328)
98 TIGR02021 BchM-ChlM magnesium 99.4 1.2E-11 2.6E-16 97.8 15.0 96 52-155 54-152 (219)
99 COG0742 N6-adenine-specific me 99.4 3E-11 6.4E-16 91.8 16.1 139 22-164 9-155 (187)
100 PRK11188 rrmJ 23S rRNA methylt 99.4 3.2E-11 6.9E-16 94.7 16.9 136 52-202 50-204 (209)
101 TIGR02716 C20_methyl_CrtF C-20 99.4 1.8E-11 4E-16 101.6 16.1 103 52-160 148-253 (306)
102 TIGR01983 UbiG ubiquinone bios 99.4 9.6E-12 2.1E-16 98.5 13.7 102 52-158 44-146 (224)
103 PRK13942 protein-L-isoaspartat 99.4 1E-11 2.2E-16 97.8 13.7 112 38-160 60-175 (212)
104 TIGR00446 nop2p NOL1/NOP2/sun 99.4 1.1E-11 2.4E-16 100.7 14.0 138 36-180 56-218 (264)
105 COG4106 Tam Trans-aconitate me 99.4 2.9E-12 6.2E-17 98.4 9.4 107 45-162 22-130 (257)
106 PRK07580 Mg-protoporphyrin IX 99.4 1.9E-11 4.1E-16 97.2 14.6 95 51-153 61-158 (230)
107 PRK07402 precorrin-6B methylas 99.4 5E-11 1.1E-15 92.7 16.5 144 52-207 39-187 (196)
108 TIGR00563 rsmB ribosomal RNA s 99.4 4.7E-11 1E-15 103.4 17.8 142 38-184 226-392 (426)
109 PF10672 Methyltrans_SAM: S-ad 99.4 9.8E-13 2.1E-17 107.1 6.7 104 52-156 122-233 (286)
110 PRK11727 23S rRNA mA1618 methy 99.4 2.5E-11 5.4E-16 100.6 15.0 160 53-214 114-317 (321)
111 PRK00312 pcm protein-L-isoaspa 99.4 2.1E-11 4.7E-16 95.9 13.9 108 41-160 65-174 (212)
112 PF05401 NodS: Nodulation prot 99.4 2.1E-11 4.6E-16 93.0 13.2 144 54-208 44-198 (201)
113 PRK13255 thiopurine S-methyltr 99.4 7.8E-11 1.7E-15 93.0 16.9 142 38-187 22-188 (218)
114 PHA03411 putative methyltransf 99.4 2.9E-11 6.3E-16 97.4 13.8 122 53-185 64-210 (279)
115 PRK14904 16S rRNA methyltransf 99.4 4.2E-11 9E-16 104.2 16.0 150 29-186 227-403 (445)
116 TIGR00479 rumA 23S rRNA (uraci 99.3 4.3E-11 9.4E-16 103.8 16.0 149 39-196 277-428 (431)
117 PTZ00146 fibrillarin; Provisio 99.3 1.9E-10 4.2E-15 93.6 18.6 149 32-187 106-269 (293)
118 PRK14903 16S rRNA methyltransf 99.3 2.9E-11 6.2E-16 104.7 14.7 131 52-186 236-392 (431)
119 PRK05785 hypothetical protein; 99.3 1.8E-11 4E-16 97.2 12.4 89 53-154 51-140 (226)
120 PLN02781 Probable caffeoyl-CoA 99.3 4E-11 8.6E-16 95.8 14.1 101 52-155 67-172 (234)
121 PLN02585 magnesium protoporphy 99.3 9.4E-11 2E-15 97.2 16.7 126 52-188 143-298 (315)
122 PRK06922 hypothetical protein; 99.3 7.8E-12 1.7E-16 110.9 10.6 104 52-159 417-535 (677)
123 PRK11705 cyclopropane fatty ac 99.3 1.8E-11 4E-16 104.3 12.6 99 51-160 165-266 (383)
124 TIGR03587 Pse_Me-ase pseudamin 99.3 4.8E-11 1E-15 93.4 13.8 89 52-151 42-134 (204)
125 KOG3201 Uncharacterized conser 99.3 2.4E-12 5.2E-17 94.4 6.0 155 30-188 5-165 (201)
126 COG2518 Pcm Protein-L-isoaspar 99.3 2.3E-11 4.9E-16 93.9 11.4 109 42-162 61-170 (209)
127 COG0357 GidB Predicted S-adeno 99.3 3.3E-11 7.2E-16 94.0 12.0 157 28-201 47-207 (215)
128 PRK14121 tRNA (guanine-N(7)-)- 99.3 5.2E-11 1.1E-15 100.6 13.9 120 52-176 121-248 (390)
129 KOG4300 Predicted methyltransf 99.3 8.8E-12 1.9E-16 95.1 8.2 102 55-160 78-181 (252)
130 COG4976 Predicted methyltransf 99.3 5.7E-12 1.2E-16 97.5 7.1 161 38-207 110-286 (287)
131 PF08704 GCD14: tRNA methyltra 99.3 7.7E-11 1.7E-15 94.2 13.8 130 49-187 36-169 (247)
132 PRK05031 tRNA (uracil-5-)-meth 99.3 8.5E-11 1.8E-15 99.6 14.8 156 39-206 192-361 (362)
133 smart00138 MeTrc Methyltransfe 99.3 3.6E-11 7.7E-16 97.7 11.0 99 53-155 99-236 (264)
134 TIGR02081 metW methionine bios 99.3 8E-11 1.7E-15 91.4 12.5 132 53-197 13-175 (194)
135 KOG1500 Protein arginine N-met 99.3 2.8E-11 6.1E-16 98.5 9.9 102 49-156 173-277 (517)
136 COG4122 Predicted O-methyltran 99.3 2.8E-10 6E-15 89.1 14.8 142 37-188 46-207 (219)
137 TIGR02143 trmA_only tRNA (urac 99.3 1.7E-10 3.7E-15 97.4 14.8 155 40-206 184-352 (353)
138 PHA03412 putative methyltransf 99.3 2.7E-11 5.9E-16 95.5 9.0 92 53-155 49-157 (241)
139 PLN02336 phosphoethanolamine N 99.2 7.9E-11 1.7E-15 103.4 12.0 102 52-159 36-140 (475)
140 cd02440 AdoMet_MTases S-adenos 99.2 8.8E-11 1.9E-15 80.3 9.8 98 56-157 1-100 (107)
141 COG2520 Predicted methyltransf 99.2 2E-10 4.4E-15 95.3 13.3 123 52-182 187-313 (341)
142 PLN02476 O-methyltransferase 99.2 4E-10 8.7E-15 91.5 14.5 134 52-190 117-269 (278)
143 COG2265 TrmA SAM-dependent met 99.2 4.5E-10 9.7E-15 96.7 15.6 148 38-195 277-427 (432)
144 PRK11088 rrmA 23S rRNA methylt 99.2 3.1E-10 6.7E-15 92.7 13.2 91 53-160 85-180 (272)
145 TIGR00438 rrmJ cell division p 99.2 2.4E-09 5.1E-14 82.7 17.0 120 52-187 31-168 (188)
146 COG1041 Predicted DNA modifica 99.2 4.3E-10 9.2E-15 92.9 13.1 142 37-192 180-334 (347)
147 PRK04457 spermidine synthase; 99.2 1.8E-10 3.9E-15 93.4 10.7 102 53-158 66-174 (262)
148 PRK06202 hypothetical protein; 99.2 2E-10 4.2E-15 91.7 10.7 93 52-152 59-159 (232)
149 PF01135 PCMT: Protein-L-isoas 99.2 1.3E-10 2.9E-15 90.9 9.3 110 41-161 60-172 (209)
150 PRK13943 protein-L-isoaspartat 99.2 6.9E-10 1.5E-14 92.3 13.9 108 41-159 68-178 (322)
151 KOG2793 Putative N2,N2-dimethy 99.2 1.7E-09 3.7E-14 86.0 15.3 159 28-188 49-224 (248)
152 PF07021 MetW: Methionine bios 99.2 1.8E-10 3.8E-15 87.8 9.2 98 40-152 5-103 (193)
153 PF01596 Methyltransf_3: O-met 99.2 2.6E-10 5.6E-15 89.1 10.3 145 38-190 33-196 (205)
154 PF02475 Met_10: Met-10+ like- 99.2 1.4E-10 3.1E-15 89.9 8.8 95 52-155 100-196 (200)
155 KOG3420 Predicted RNA methylas 99.2 1.1E-10 2.4E-15 84.2 7.2 91 40-136 34-126 (185)
156 PRK13256 thiopurine S-methyltr 99.2 2.9E-09 6.4E-14 84.1 15.6 148 37-187 27-195 (226)
157 smart00650 rADc Ribosomal RNA 99.1 7.8E-10 1.7E-14 84.0 11.1 87 52-149 12-99 (169)
158 KOG1541 Predicted protein carb 99.1 1.4E-09 3E-14 84.0 12.2 151 23-184 17-182 (270)
159 PRK00811 spermidine synthase; 99.1 8.8E-10 1.9E-14 90.4 12.0 104 53-159 76-189 (283)
160 PF05958 tRNA_U5-meth_tr: tRNA 99.1 1.3E-09 2.8E-14 92.1 12.9 158 37-206 180-351 (352)
161 PF01170 UPF0020: Putative RNA 99.1 1.2E-09 2.6E-14 83.7 11.5 136 40-187 14-169 (179)
162 PF03291 Pox_MCEL: mRNA cappin 99.1 3.9E-10 8.4E-15 94.1 9.1 128 35-164 43-187 (331)
163 KOG3010 Methyltransferase [Gen 99.1 4E-10 8.7E-15 88.1 8.5 102 56-163 36-139 (261)
164 PF05185 PRMT5: PRMT5 arginine 99.1 4.7E-10 1E-14 97.2 9.5 98 53-155 186-291 (448)
165 PF05724 TPMT: Thiopurine S-me 99.1 4.6E-10 1E-14 88.5 8.5 146 37-187 21-188 (218)
166 PF02527 GidB: rRNA small subu 99.1 4.7E-10 1E-14 86.1 8.1 125 56-191 51-177 (184)
167 TIGR03438 probable methyltrans 99.1 2.6E-09 5.7E-14 88.5 12.5 106 53-158 63-174 (301)
168 TIGR00478 tly hemolysin TlyA f 99.0 4.6E-09 9.9E-14 83.2 11.8 140 34-190 55-218 (228)
169 PRK03612 spermidine synthase; 99.0 1.9E-09 4E-14 95.6 10.1 128 52-183 296-438 (521)
170 TIGR00417 speE spermidine synt 99.0 5.2E-09 1.1E-13 85.4 11.9 105 53-160 72-185 (270)
171 PLN02589 caffeoyl-CoA O-methyl 99.0 3.5E-09 7.5E-14 84.9 10.4 101 52-155 78-184 (247)
172 KOG2361 Predicted methyltransf 99.0 2.2E-09 4.7E-14 84.0 8.3 130 56-188 74-236 (264)
173 PF05219 DREV: DREV methyltran 99.0 3.9E-08 8.4E-13 78.2 15.5 122 52-190 93-241 (265)
174 TIGR00308 TRM1 tRNA(guanine-26 99.0 1.9E-09 4.2E-14 91.4 8.7 102 54-164 45-149 (374)
175 KOG1975 mRNA cap methyltransfe 99.0 2.9E-09 6.3E-14 86.5 9.1 131 36-176 105-247 (389)
176 PRK04338 N(2),N(2)-dimethylgua 99.0 3.5E-09 7.5E-14 90.2 10.0 100 54-163 58-159 (382)
177 PF02390 Methyltransf_4: Putat 98.9 1.1E-08 2.5E-13 79.3 10.8 126 56-186 20-157 (195)
178 PTZ00338 dimethyladenosine tra 98.9 7.3E-09 1.6E-13 85.3 10.1 81 49-136 32-113 (294)
179 PRK11933 yebU rRNA (cytosine-C 98.9 6.7E-08 1.4E-12 84.3 16.5 145 33-181 93-262 (470)
180 PF00891 Methyltransf_2: O-met 98.9 1.3E-08 2.8E-13 81.6 10.5 96 52-161 99-199 (241)
181 PF06080 DUF938: Protein of un 98.9 1.5E-08 3.3E-13 78.2 10.3 105 56-160 28-140 (204)
182 PRK01581 speE spermidine synth 98.9 2.6E-08 5.7E-13 83.4 12.4 133 52-187 149-295 (374)
183 COG2521 Predicted archaeal met 98.9 5.7E-09 1.2E-13 81.3 7.3 133 52-187 133-275 (287)
184 PLN02366 spermidine synthase 98.9 4.2E-08 9.2E-13 81.2 12.2 103 52-156 90-201 (308)
185 PRK00274 ksgA 16S ribosomal RN 98.9 1.6E-08 3.4E-13 82.7 9.5 76 52-136 41-117 (272)
186 PRK04148 hypothetical protein; 98.9 3.8E-08 8.2E-13 71.2 10.2 95 42-151 4-101 (134)
187 PF09445 Methyltransf_15: RNA 98.9 4.8E-09 1E-13 78.5 5.6 79 55-135 1-80 (163)
188 PRK14896 ksgA 16S ribosomal RN 98.8 3E-08 6.4E-13 80.4 10.3 76 51-136 27-103 (258)
189 COG3963 Phospholipid N-methylt 98.8 3.7E-08 8E-13 73.0 9.6 121 37-163 31-158 (194)
190 KOG2899 Predicted methyltransf 98.8 5.8E-08 1.3E-12 76.1 10.0 105 50-155 55-203 (288)
191 KOG2920 Predicted methyltransf 98.8 3.1E-09 6.7E-14 85.3 1.9 130 20-155 79-228 (282)
192 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3.3E-07 7.1E-12 84.1 15.1 125 35-161 170-347 (702)
193 PF05148 Methyltransf_8: Hypot 98.7 3.3E-07 7.1E-12 70.8 12.6 142 35-207 54-198 (219)
194 TIGR00755 ksgA dimethyladenosi 98.7 2.4E-07 5.2E-12 74.9 12.2 77 49-135 25-105 (253)
195 PF02384 N6_Mtase: N-6 DNA Met 98.7 1.6E-07 3.4E-12 78.2 11.4 154 52-207 45-233 (311)
196 COG0116 Predicted N6-adenine-s 98.7 1.5E-06 3.2E-11 73.1 17.0 106 52-162 190-344 (381)
197 KOG2730 Methylase [General fun 98.7 7.8E-09 1.7E-13 79.8 2.6 119 34-153 73-194 (263)
198 PLN02232 ubiquinone biosynthes 98.7 1E-07 2.3E-12 71.7 8.6 77 80-160 1-80 (160)
199 COG0144 Sun tRNA and rRNA cyto 98.7 2E-06 4.3E-11 72.8 17.2 149 35-187 140-315 (355)
200 PF05891 Methyltransf_PK: AdoM 98.7 7.6E-08 1.7E-12 74.8 7.6 129 53-187 55-199 (218)
201 KOG0820 Ribosomal RNA adenine 98.7 2.4E-07 5.2E-12 73.9 9.6 97 32-135 37-134 (315)
202 COG0220 Predicted S-adenosylme 98.6 3.6E-07 7.8E-12 72.4 10.5 118 55-176 50-177 (227)
203 PF05971 Methyltransf_10: Prot 98.6 2.1E-06 4.6E-11 70.3 15.1 84 54-137 103-190 (299)
204 COG1189 Predicted rRNA methyla 98.6 2.1E-06 4.6E-11 67.4 13.9 159 34-205 59-241 (245)
205 PF01861 DUF43: Protein of unk 98.6 4.4E-06 9.6E-11 66.0 14.9 154 28-187 19-176 (243)
206 KOG1663 O-methyltransferase [S 98.6 8.8E-07 1.9E-11 69.1 10.6 112 38-155 61-177 (237)
207 KOG2915 tRNA(1-methyladenosine 98.6 2.9E-06 6.3E-11 67.8 13.7 127 52-187 104-233 (314)
208 COG0293 FtsJ 23S rRNA methylas 98.6 3.5E-06 7.6E-11 65.2 13.9 152 37-204 28-200 (205)
209 PLN02823 spermine synthase 98.6 6.7E-07 1.5E-11 74.9 10.5 101 53-156 103-215 (336)
210 KOG1661 Protein-L-isoaspartate 98.5 2.1E-06 4.6E-11 66.1 12.0 115 38-162 64-194 (237)
211 TIGR02987 met_A_Alw26 type II 98.5 4.9E-06 1.1E-10 74.2 16.1 83 53-136 31-124 (524)
212 KOG3045 Predicted RNA methylas 98.5 2.4E-06 5.2E-11 67.8 12.1 124 53-208 180-305 (325)
213 COG4076 Predicted RNA methylas 98.5 3.9E-07 8.4E-12 68.9 6.6 95 53-155 32-129 (252)
214 COG0030 KsgA Dimethyladenosine 98.4 1.7E-06 3.6E-11 69.5 9.5 88 42-136 19-107 (259)
215 PRK10611 chemotaxis methyltran 98.4 5.5E-07 1.2E-11 73.7 6.8 99 54-155 116-256 (287)
216 PRK01544 bifunctional N5-gluta 98.4 3.5E-06 7.7E-11 74.6 11.9 128 53-186 347-485 (506)
217 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 2E-06 4.3E-11 70.7 9.6 182 30-216 63-280 (283)
218 COG1352 CheR Methylase of chem 98.4 4.5E-06 9.7E-11 67.7 11.4 99 53-155 96-235 (268)
219 PF01728 FtsJ: FtsJ-like methy 98.4 5.8E-07 1.3E-11 68.9 5.4 150 37-201 4-177 (181)
220 KOG2187 tRNA uracil-5-methyltr 98.4 2.9E-06 6.3E-11 73.3 10.0 123 37-164 366-491 (534)
221 PF08123 DOT1: Histone methyla 98.4 1.3E-06 2.8E-11 68.3 7.1 113 41-155 30-152 (205)
222 PF01739 CheR: CheR methyltran 98.4 5.4E-07 1.2E-11 69.9 4.5 99 53-155 31-169 (196)
223 KOG2940 Predicted methyltransf 98.3 8.1E-07 1.8E-11 69.3 5.3 95 54-155 73-168 (325)
224 PF04816 DUF633: Family of unk 98.3 7.9E-06 1.7E-10 63.8 10.8 121 57-188 1-123 (205)
225 COG0421 SpeE Spermidine syntha 98.3 1.2E-05 2.7E-10 65.7 12.1 145 55-207 78-239 (282)
226 COG1889 NOP1 Fibrillarin-like 98.3 2.3E-05 5.1E-10 60.1 12.7 160 21-187 38-212 (231)
227 PF12147 Methyltransf_20: Puta 98.3 2.7E-05 5.8E-10 63.1 13.4 108 53-162 135-249 (311)
228 PF01564 Spermine_synth: Sperm 98.3 2.9E-06 6.3E-11 68.3 7.6 106 53-161 76-191 (246)
229 PF01269 Fibrillarin: Fibrilla 98.3 0.00043 9.4E-09 54.2 18.7 150 31-187 46-210 (229)
230 PF11968 DUF3321: Putative met 98.2 4.3E-05 9.3E-10 59.5 12.8 134 37-188 30-180 (219)
231 PRK11760 putative 23S rRNA C24 98.2 1.6E-05 3.5E-10 66.1 11.0 102 37-154 187-296 (357)
232 PRK00536 speE spermidine synth 98.2 4.2E-05 9.1E-10 61.9 12.5 91 52-155 71-165 (262)
233 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.2 3.5E-06 7.6E-11 67.8 5.9 138 51-188 54-238 (256)
234 PF02005 TRM: N2,N2-dimethylgu 98.1 3E-06 6.6E-11 72.1 5.0 106 53-166 49-158 (377)
235 COG1867 TRM1 N2,N2-dimethylgua 98.1 1.5E-05 3.3E-10 66.4 8.3 104 54-166 53-158 (380)
236 PF03141 Methyltransf_29: Puta 98.1 5.5E-06 1.2E-10 71.6 5.9 127 32-166 91-223 (506)
237 PRK00050 16S rRNA m(4)C1402 me 98.1 1.2E-05 2.7E-10 66.1 7.6 88 42-132 8-98 (296)
238 PF00398 RrnaAD: Ribosomal RNA 98.1 7.7E-05 1.7E-09 60.6 11.9 94 52-153 29-123 (262)
239 KOG1709 Guanidinoacetate methy 98.1 1.7E-05 3.6E-10 61.5 7.2 99 52-155 100-200 (271)
240 PRK10742 putative methyltransf 98.1 2E-05 4.4E-10 62.8 7.9 78 56-137 91-177 (250)
241 TIGR01444 fkbM_fam methyltrans 98.1 2.2E-05 4.8E-10 57.5 7.6 58 56-114 1-60 (143)
242 KOG2671 Putative RNA methylase 98.0 9.9E-06 2.2E-10 66.8 5.9 109 52-164 207-357 (421)
243 KOG1269 SAM-dependent methyltr 98.0 2.2E-05 4.7E-10 66.4 8.1 100 52-155 109-209 (364)
244 PF06962 rRNA_methylase: Putat 98.0 5.5E-05 1.2E-09 55.2 8.9 122 78-202 1-138 (140)
245 KOG1122 tRNA and rRNA cytosine 98.0 0.00026 5.6E-09 60.1 13.8 126 52-180 240-390 (460)
246 PF13679 Methyltransf_32: Meth 98.0 0.00018 4E-09 52.8 11.4 91 52-149 24-122 (141)
247 KOG3178 Hydroxyindole-O-methyl 97.9 7.4E-05 1.6E-09 62.0 9.4 93 55-160 179-274 (342)
248 PF09243 Rsm22: Mitochondrial 97.9 0.00018 4E-09 58.8 11.5 110 49-166 29-143 (274)
249 KOG1227 Putative methyltransfe 97.9 8.2E-06 1.8E-10 66.1 2.7 100 53-161 194-295 (351)
250 COG2384 Predicted SAM-dependen 97.9 0.0011 2.3E-08 51.9 14.1 141 54-207 17-159 (226)
251 PF07942 N2227: N2227-like pro 97.9 0.00028 6.1E-09 57.3 11.2 132 52-189 55-242 (270)
252 PF03059 NAS: Nicotianamine sy 97.8 0.00033 7.1E-09 57.0 10.1 128 54-187 121-255 (276)
253 PHA01634 hypothetical protein 97.8 0.00017 3.8E-09 51.3 7.3 72 51-130 26-98 (156)
254 COG0500 SmtA SAM-dependent met 97.7 0.00085 1.9E-08 48.5 11.2 97 57-160 52-154 (257)
255 COG3129 Predicted SAM-dependen 97.7 0.00094 2E-08 52.5 11.1 96 41-137 63-166 (292)
256 KOG3987 Uncharacterized conser 97.7 4E-05 8.6E-10 59.1 3.4 114 31-160 88-206 (288)
257 KOG1501 Arginine N-methyltrans 97.7 0.00016 3.6E-09 61.6 7.3 100 56-158 69-172 (636)
258 cd00315 Cyt_C5_DNA_methylase C 97.7 0.0016 3.5E-08 53.3 12.8 137 56-204 2-162 (275)
259 KOG1331 Predicted methyltransf 97.6 3.8E-05 8.2E-10 62.0 2.7 125 21-164 17-146 (293)
260 KOG1253 tRNA methyltransferase 97.5 8.1E-05 1.8E-09 64.2 3.2 107 53-164 109-218 (525)
261 COG4262 Predicted spermidine s 97.5 0.0018 3.8E-08 54.3 10.8 128 54-185 290-432 (508)
262 KOG4589 Cell division protein 97.4 0.002 4.3E-08 49.1 9.7 133 52-201 68-222 (232)
263 TIGR03439 methyl_EasF probable 97.4 0.0024 5.1E-08 53.4 11.1 106 53-159 76-195 (319)
264 PF13578 Methyltransf_24: Meth 97.4 1.8E-05 3.9E-10 55.1 -1.8 95 58-155 1-99 (106)
265 COG0286 HsdM Type I restrictio 97.3 0.011 2.4E-07 52.4 14.7 127 53-179 186-346 (489)
266 PF00145 DNA_methylase: C-5 cy 97.3 0.0084 1.8E-07 49.8 12.8 136 56-205 2-162 (335)
267 PF04445 SAM_MT: Putative SAM- 97.3 0.0012 2.7E-08 52.3 7.2 78 55-136 77-163 (234)
268 COG5459 Predicted rRNA methyla 97.2 0.0016 3.5E-08 54.3 7.7 108 49-162 109-225 (484)
269 PF04989 CmcI: Cephalosporin h 97.2 0.0016 3.5E-08 50.7 7.1 122 31-155 10-141 (206)
270 COG1568 Predicted methyltransf 97.1 0.0013 2.8E-08 53.0 6.2 138 45-187 144-286 (354)
271 PF07091 FmrO: Ribosomal RNA m 97.0 0.0083 1.8E-07 48.0 9.8 127 53-190 105-245 (251)
272 PRK11524 putative methyltransf 97.0 0.0021 4.5E-08 52.9 6.5 57 40-97 195-252 (284)
273 PF01555 N6_N4_Mtase: DNA meth 97.0 0.0012 2.6E-08 51.9 4.9 59 34-93 172-231 (231)
274 TIGR00006 S-adenosyl-methyltra 97.0 0.0047 1E-07 51.1 8.2 88 42-131 9-99 (305)
275 COG0275 Predicted S-adenosylme 96.9 0.031 6.8E-07 45.9 12.5 69 41-111 11-82 (314)
276 KOG4058 Uncharacterized conser 96.9 0.006 1.3E-07 44.8 7.5 95 52-155 71-166 (199)
277 TIGR00675 dcm DNA-methyltransf 96.8 0.02 4.3E-07 47.9 10.8 132 57-202 1-157 (315)
278 KOG3115 Methyltransferase-like 96.8 0.012 2.5E-07 45.6 8.5 109 53-164 60-184 (249)
279 PRK13699 putative methylase; P 96.7 0.0053 1.1E-07 48.8 6.6 58 40-98 150-208 (227)
280 PF11599 AviRa: RRNA methyltra 96.7 0.017 3.7E-07 45.1 8.6 111 52-164 50-215 (246)
281 COG2961 ComJ Protein involved 96.6 0.065 1.4E-06 42.8 11.7 126 58-188 93-222 (279)
282 PF10237 N6-adenineMlase: Prob 96.6 0.078 1.7E-06 39.9 11.5 137 37-192 10-148 (162)
283 KOG2798 Putative trehalase [Ca 96.5 0.09 2E-06 43.5 12.3 128 54-187 151-335 (369)
284 KOG2352 Predicted spermine/spe 96.5 0.028 6.1E-07 48.9 9.9 101 56-162 51-162 (482)
285 KOG2912 Predicted DNA methylas 96.5 0.11 2.4E-06 43.0 12.7 148 57-207 106-293 (419)
286 COG4798 Predicted methyltransf 96.4 0.054 1.2E-06 41.8 9.5 128 52-187 47-203 (238)
287 PF04672 Methyltransf_19: S-ad 96.3 0.053 1.2E-06 44.0 9.6 100 55-155 70-184 (267)
288 KOG2198 tRNA cytosine-5-methyl 96.1 0.14 3E-06 43.2 11.8 109 52-162 154-296 (375)
289 COG0270 Dcm Site-specific DNA 96.1 0.016 3.4E-07 48.7 6.4 76 54-136 3-79 (328)
290 PRK10458 DNA cytosine methylas 96.0 0.29 6.3E-06 43.1 13.7 79 54-135 88-180 (467)
291 KOG0822 Protein kinase inhibit 96.0 0.058 1.3E-06 47.5 9.0 96 55-155 369-472 (649)
292 KOG1596 Fibrillarin and relate 95.8 0.44 9.6E-06 38.1 12.6 126 30-161 128-261 (317)
293 KOG2078 tRNA modification enzy 95.8 0.007 1.5E-07 51.7 2.8 80 32-112 228-309 (495)
294 PRK01747 mnmC bifunctional tRN 95.7 0.11 2.3E-06 48.0 10.2 125 54-189 58-227 (662)
295 COG1064 AdhP Zn-dependent alco 95.6 0.15 3.4E-06 42.8 9.8 94 52-163 165-261 (339)
296 PF03141 Methyltransf_29: Puta 95.4 0.12 2.5E-06 45.4 8.7 122 55-191 367-493 (506)
297 PF03492 Methyltransf_7: SAM d 95.2 0.42 9.2E-06 40.3 11.4 82 51-136 14-119 (334)
298 PF07757 AdoMet_MTase: Predict 94.8 0.059 1.3E-06 37.4 4.3 32 53-85 58-89 (112)
299 PF10354 DUF2431: Domain of un 94.7 0.61 1.3E-05 35.2 10.1 127 60-187 3-150 (166)
300 KOG3924 Putative protein methy 94.4 0.15 3.2E-06 43.4 6.6 112 42-155 181-302 (419)
301 PRK13699 putative methylase; P 94.4 0.17 3.7E-06 40.3 6.7 66 121-190 17-97 (227)
302 PLN02668 indole-3-acetate carb 94.3 0.63 1.4E-05 40.0 10.3 83 54-137 64-175 (386)
303 COG1565 Uncharacterized conser 94.2 0.18 4E-06 42.5 6.6 48 52-99 76-133 (370)
304 KOG1562 Spermidine synthase [A 94.1 0.45 9.7E-06 39.2 8.4 102 52-155 120-230 (337)
305 KOG0024 Sorbitol dehydrogenase 93.9 0.11 2.5E-06 43.1 4.9 95 52-156 168-268 (354)
306 KOG2651 rRNA adenine N-6-methy 93.8 0.17 3.8E-06 42.9 5.8 52 41-92 140-193 (476)
307 PF04378 RsmJ: Ribosomal RNA s 93.7 0.33 7.1E-06 39.0 7.0 121 58-183 62-185 (245)
308 PRK09880 L-idonate 5-dehydroge 93.5 0.46 1E-05 39.9 8.2 95 52-161 168-266 (343)
309 PRK09424 pntA NAD(P) transhydr 93.4 1 2.2E-05 40.2 10.4 102 52-162 163-286 (509)
310 PF03269 DUF268: Caenorhabditi 93.4 0.26 5.7E-06 36.9 5.6 121 54-187 2-143 (177)
311 PRK15001 SAM-dependent 23S rib 93.4 4.7 0.0001 34.7 15.4 130 7-156 5-137 (378)
312 COG2933 Predicted SAM-dependen 93.2 0.81 1.8E-05 37.1 8.4 102 37-154 187-296 (358)
313 PF07279 DUF1442: Protein of u 93.0 2.2 4.7E-05 33.5 10.4 74 54-130 42-121 (218)
314 PTZ00357 methyltransferase; Pr 93.0 0.6 1.3E-05 42.9 8.1 98 56-153 703-823 (1072)
315 COG3510 CmcI Cephalosporin hyd 92.7 0.79 1.7E-05 35.4 7.4 120 30-155 46-174 (237)
316 PRK11524 putative methyltransf 92.6 0.29 6.2E-06 40.3 5.5 77 104-187 9-101 (284)
317 COG1063 Tdh Threonine dehydrog 92.0 2 4.4E-05 36.4 10.1 99 52-163 167-271 (350)
318 KOG1099 SAM-dependent methyltr 91.8 0.65 1.4E-05 36.9 6.1 110 38-158 25-160 (294)
319 PF01795 Methyltransf_5: MraW 91.7 0.21 4.5E-06 41.6 3.6 78 52-131 19-100 (310)
320 cd08283 FDH_like_1 Glutathione 91.2 2.5 5.4E-05 36.1 9.9 100 52-160 183-305 (386)
321 PF05430 Methyltransf_30: S-ad 91.1 0.74 1.6E-05 33.0 5.5 60 123-190 49-112 (124)
322 PRK08324 short chain dehydroge 90.9 3.4 7.3E-05 38.4 11.1 108 21-133 389-507 (681)
323 PF02636 Methyltransf_28: Puta 90.9 0.88 1.9E-05 36.7 6.5 44 54-97 19-72 (252)
324 PF05711 TylF: Macrocin-O-meth 90.6 0.46 1E-05 38.3 4.5 125 54-184 75-233 (248)
325 TIGR00497 hsdM type I restrict 90.1 13 0.00029 33.1 14.5 151 53-206 217-404 (501)
326 KOG2497 Predicted methyltransf 90.0 0.2 4.4E-06 40.6 2.0 122 28-151 64-190 (262)
327 PF01555 N6_N4_Mtase: DNA meth 89.8 0.95 2.1E-05 35.2 5.7 62 125-188 1-82 (231)
328 PF11899 DUF3419: Protein of u 89.5 1.3 2.8E-05 38.1 6.6 54 34-91 19-73 (380)
329 PF03721 UDPG_MGDP_dh_N: UDP-g 89.4 2.1 4.6E-05 32.8 7.2 130 56-195 2-158 (185)
330 COG0863 DNA modification methy 89.4 1.6 3.4E-05 35.8 6.9 48 50-98 219-267 (302)
331 cd08230 glucose_DH Glucose deh 89.2 2.5 5.4E-05 35.6 8.2 93 52-161 171-269 (355)
332 COG4301 Uncharacterized conser 89.1 5 0.00011 32.5 9.0 101 53-155 78-187 (321)
333 PF03686 UPF0146: Uncharacteri 89.0 2.7 6E-05 30.1 6.9 91 42-152 4-95 (127)
334 TIGR00027 mthyl_TIGR00027 meth 89.0 3.6 7.8E-05 33.4 8.6 101 54-155 82-191 (260)
335 PF05206 TRM13: Methyltransfer 88.9 7.7 0.00017 31.5 10.3 76 42-118 6-89 (259)
336 cd08237 ribitol-5-phosphate_DH 88.9 3.2 6.9E-05 34.8 8.6 91 52-161 162-256 (341)
337 PRK12548 shikimate 5-dehydroge 88.9 12 0.00025 30.9 11.6 128 52-186 124-257 (289)
338 PF02254 TrkA_N: TrkA-N domain 88.8 4.4 9.6E-05 27.9 8.0 83 62-155 4-90 (116)
339 COG1179 Dinucleotide-utilizing 88.5 2.1 4.5E-05 34.4 6.5 35 52-86 28-64 (263)
340 PRK05786 fabG 3-ketoacyl-(acyl 87.7 11 0.00025 29.3 11.1 76 53-133 4-90 (238)
341 KOG0821 Predicted ribosomal RN 87.7 11 0.00025 29.9 10.1 62 52-115 49-111 (326)
342 PF00107 ADH_zinc_N: Zinc-bind 87.4 0.99 2.1E-05 31.9 4.0 84 63-161 1-89 (130)
343 TIGR02822 adh_fam_2 zinc-bindi 86.7 10 0.00023 31.6 10.3 88 52-161 164-254 (329)
344 COG0677 WecC UDP-N-acetyl-D-ma 86.5 2 4.3E-05 37.0 5.7 135 55-199 10-172 (436)
345 TIGR01202 bchC 2-desacetyl-2-h 86.5 4 8.7E-05 33.7 7.7 86 52-161 143-231 (308)
346 PRK06181 short chain dehydroge 86.3 12 0.00025 29.8 10.1 75 55-133 2-87 (263)
347 PRK06701 short chain dehydroge 86.3 13 0.00027 30.5 10.4 79 52-133 44-133 (290)
348 TIGR03366 HpnZ_proposed putati 86.3 5.2 0.00011 32.5 8.1 95 52-161 119-218 (280)
349 PF05050 Methyltransf_21: Meth 86.1 2.4 5.2E-05 31.1 5.6 51 59-109 1-59 (167)
350 TIGR02356 adenyl_thiF thiazole 85.6 12 0.00025 29.1 9.4 34 52-85 19-54 (202)
351 PRK14106 murD UDP-N-acetylmura 84.7 26 0.00057 30.5 12.4 119 52-183 3-136 (450)
352 PF06859 Bin3: Bicoid-interact 84.6 0.29 6.3E-06 34.1 -0.0 32 124-155 1-38 (110)
353 PRK07326 short chain dehydroge 84.3 17 0.00038 28.2 10.2 75 53-132 5-90 (237)
354 KOG1201 Hydroxysteroid 17-beta 83.8 6.6 0.00014 32.5 7.4 79 52-134 36-124 (300)
355 cd08254 hydroxyacyl_CoA_DH 6-h 83.7 4.9 0.00011 33.1 7.1 95 52-160 164-262 (338)
356 PRK06124 gluconate 5-dehydroge 83.6 20 0.00043 28.3 11.2 78 52-133 9-97 (256)
357 PRK12549 shikimate 5-dehydroge 83.1 20 0.00044 29.4 10.3 121 52-186 125-248 (284)
358 PRK07904 short chain dehydroge 82.8 11 0.00024 30.1 8.5 78 53-132 7-95 (253)
359 PRK05867 short chain dehydroge 82.8 9.6 0.00021 30.1 8.2 80 52-134 7-96 (253)
360 TIGR03451 mycoS_dep_FDH mycoth 82.6 5.4 0.00012 33.6 6.9 94 52-160 175-275 (358)
361 cd05188 MDR Medium chain reduc 82.5 4.2 9.2E-05 32.1 6.0 95 52-161 133-232 (271)
362 KOG3350 Uncharacterized conser 82.5 20 0.00043 27.5 10.4 99 52-162 72-172 (217)
363 PRK12475 thiamine/molybdopteri 82.3 21 0.00046 30.2 10.3 77 52-130 22-122 (338)
364 PRK07063 short chain dehydroge 82.2 8.4 0.00018 30.6 7.6 81 52-133 5-95 (260)
365 PRK07109 short chain dehydroge 81.5 27 0.00058 29.3 10.7 78 52-133 6-94 (334)
366 cd08281 liver_ADH_like1 Zinc-d 81.2 6 0.00013 33.5 6.7 94 52-160 190-289 (371)
367 cd08239 THR_DH_like L-threonin 81.2 7.5 0.00016 32.3 7.2 95 52-161 162-262 (339)
368 KOG2352 Predicted spermine/spe 81.1 2.7 5.7E-05 37.0 4.5 107 54-162 296-417 (482)
369 TIGR00561 pntA NAD(P) transhyd 80.9 12 0.00027 33.5 8.6 95 52-155 162-278 (511)
370 PRK07806 short chain dehydroge 80.7 25 0.00055 27.5 11.4 105 52-160 4-133 (248)
371 PRK08644 thiamine biosynthesis 80.4 15 0.00032 28.8 8.2 34 52-85 26-61 (212)
372 PF02086 MethyltransfD12: D12 80.3 2.2 4.7E-05 34.2 3.6 43 53-96 20-63 (260)
373 PF01488 Shikimate_DH: Shikima 80.1 7.5 0.00016 28.0 6.0 75 51-135 9-86 (135)
374 PF03446 NAD_binding_2: NAD bi 80.1 2.3 5E-05 31.7 3.4 117 56-193 3-124 (163)
375 PRK08265 short chain dehydroge 78.5 32 0.00069 27.4 9.9 75 52-133 4-89 (261)
376 TIGR02354 thiF_fam2 thiamine b 78.5 22 0.00047 27.6 8.5 34 52-85 19-54 (200)
377 cd00757 ThiF_MoeB_HesA_family 78.4 28 0.00061 27.5 9.3 77 52-130 19-117 (228)
378 PRK08339 short chain dehydroge 78.4 14 0.00031 29.5 7.8 79 52-132 6-93 (263)
379 PRK05650 short chain dehydroge 78.3 32 0.0007 27.4 9.9 74 56-133 2-86 (270)
380 PF02153 PDH: Prephenate dehyd 78.2 14 0.00029 29.9 7.6 102 68-190 2-106 (258)
381 PF11312 DUF3115: Protein of u 78.1 4 8.7E-05 34.0 4.4 107 54-160 87-241 (315)
382 cd00755 YgdL_like Family of ac 77.3 19 0.00042 28.6 8.1 34 53-86 10-45 (231)
383 PTZ00142 6-phosphogluconate de 77.1 16 0.00036 32.4 8.3 125 56-193 3-131 (470)
384 PRK09291 short chain dehydroge 77.0 17 0.00037 28.6 7.8 75 55-133 3-82 (257)
385 PRK06139 short chain dehydroge 77.0 13 0.00027 31.3 7.3 79 52-133 5-93 (330)
386 COG5379 BtaA S-adenosylmethion 76.9 6.5 0.00014 32.6 5.2 38 52-90 62-100 (414)
387 PRK12749 quinate/shikimate deh 76.2 43 0.00093 27.6 11.7 126 51-185 121-253 (288)
388 PRK08589 short chain dehydroge 75.9 39 0.00085 27.1 11.3 80 52-134 4-92 (272)
389 PRK10309 galactitol-1-phosphat 75.8 30 0.00064 28.9 9.3 95 52-160 159-259 (347)
390 PRK05866 short chain dehydroge 75.1 17 0.00036 29.8 7.4 78 52-133 38-126 (293)
391 PRK07890 short chain dehydroge 75.1 38 0.00083 26.6 11.8 77 53-133 4-91 (258)
392 PRK05854 short chain dehydroge 75.1 22 0.00049 29.3 8.3 81 52-133 12-102 (313)
393 PRK08223 hypothetical protein; 74.8 29 0.00063 28.7 8.6 76 52-129 25-122 (287)
394 PRK07066 3-hydroxybutyryl-CoA 74.7 50 0.0011 27.7 10.6 91 55-155 8-113 (321)
395 cd08232 idonate-5-DH L-idonate 74.5 27 0.00059 28.8 8.7 94 52-160 164-261 (339)
396 PRK08628 short chain dehydroge 74.4 41 0.00088 26.5 10.3 77 52-133 5-92 (258)
397 PRK05872 short chain dehydroge 74.1 42 0.0009 27.4 9.6 79 52-134 7-95 (296)
398 PF02737 3HCDH_N: 3-hydroxyacy 73.8 22 0.00048 27.0 7.3 93 57-162 2-113 (180)
399 PRK07688 thiamine/molybdopteri 73.7 15 0.00033 31.1 6.9 34 52-85 22-57 (339)
400 PLN03154 putative allyl alcoho 73.5 43 0.00094 28.1 9.7 94 52-160 157-257 (348)
401 TIGR02632 RhaD_aldol-ADH rhamn 73.2 23 0.00051 32.9 8.6 113 20-134 380-503 (676)
402 PLN03209 translocon at the inn 73.0 62 0.0013 29.6 10.8 78 52-132 78-167 (576)
403 cd08238 sorbose_phosphate_red 73.0 51 0.0011 28.4 10.3 103 52-160 174-287 (410)
404 KOG1098 Putative SAM-dependent 73.0 6.6 0.00014 35.8 4.7 50 37-86 27-79 (780)
405 PF05063 MT-A70: MT-A70 ; Int 72.9 12 0.00027 28.2 5.7 38 147-187 38-75 (176)
406 PRK06141 ornithine cyclodeamin 72.5 37 0.00081 28.3 9.0 65 30-97 104-172 (314)
407 PRK08277 D-mannonate oxidoredu 72.3 22 0.00047 28.5 7.4 78 52-132 8-95 (278)
408 TIGR01082 murC UDP-N-acetylmur 71.5 27 0.00057 30.6 8.2 109 57-182 4-126 (448)
409 COG1748 LYS9 Saccharopine dehy 71.4 35 0.00076 29.5 8.6 74 55-134 2-78 (389)
410 TIGR00872 gnd_rel 6-phosphoglu 71.3 27 0.00058 28.8 7.8 117 56-191 2-121 (298)
411 PRK08762 molybdopterin biosynt 71.3 15 0.00033 31.5 6.5 34 52-85 133-168 (376)
412 TIGR01081 mpl UDP-N-acetylmura 71.1 31 0.00067 30.2 8.5 111 62-184 8-131 (448)
413 KOG1205 Predicted dehydrogenas 70.7 59 0.0013 26.8 10.8 82 52-134 10-101 (282)
414 PLN02740 Alcohol dehydrogenase 70.6 40 0.00086 28.7 9.0 94 52-160 197-299 (381)
415 PLN02586 probable cinnamyl alc 70.1 49 0.0011 27.9 9.3 93 52-160 182-277 (360)
416 PRK15116 sulfur acceptor prote 69.9 35 0.00077 27.9 8.0 35 52-86 28-64 (268)
417 PRK06172 short chain dehydroge 69.7 32 0.00069 27.1 7.7 79 52-133 5-93 (253)
418 PRK03369 murD UDP-N-acetylmura 69.3 83 0.0018 28.0 11.0 115 52-184 10-146 (488)
419 PLN02350 phosphogluconate dehy 69.2 19 0.00042 32.1 6.8 126 56-193 8-137 (493)
420 COG0169 AroE Shikimate 5-dehyd 69.1 64 0.0014 26.6 9.8 119 51-184 123-245 (283)
421 COG1743 Adenine-specific DNA m 68.8 5.9 0.00013 37.0 3.5 45 53-98 90-135 (875)
422 PRK05876 short chain dehydroge 68.4 30 0.00066 27.9 7.5 79 52-134 4-93 (275)
423 PRK07062 short chain dehydroge 68.3 40 0.00086 26.8 8.1 81 52-133 6-96 (265)
424 COG1255 Uncharacterized protei 68.3 40 0.00087 23.9 7.2 65 54-133 14-79 (129)
425 PRK08703 short chain dehydroge 68.1 51 0.0011 25.6 8.6 79 52-133 4-96 (239)
426 PRK06249 2-dehydropantoate 2-r 68.0 29 0.00062 28.8 7.4 88 55-155 6-100 (313)
427 PRK06035 3-hydroxyacyl-CoA deh 68.0 16 0.00035 29.9 5.8 90 55-155 4-115 (291)
428 PRK12490 6-phosphogluconate de 67.9 22 0.00047 29.3 6.6 118 57-193 3-124 (299)
429 PRK08862 short chain dehydroge 67.8 36 0.00077 26.7 7.6 78 52-132 3-91 (227)
430 PRK07035 short chain dehydroge 67.8 36 0.00077 26.7 7.7 79 52-133 6-94 (252)
431 PF11899 DUF3419: Protein of u 67.7 9.4 0.0002 32.9 4.4 61 102-164 275-337 (380)
432 PF00899 ThiF: ThiF family; I 67.4 42 0.00091 23.9 8.1 32 54-85 2-35 (135)
433 TIGR02825 B4_12hDH leukotriene 67.4 34 0.00074 28.2 7.7 94 52-161 137-237 (325)
434 cd01488 Uba3_RUB Ubiquitin act 67.2 33 0.00071 28.4 7.4 72 56-130 1-94 (291)
435 PRK07411 hypothetical protein; 67.2 28 0.00061 30.1 7.3 77 52-130 36-134 (390)
436 PRK06125 short chain dehydroge 66.7 47 0.001 26.3 8.2 79 52-133 5-90 (259)
437 COG1062 AdhC Zn-dependent alco 66.7 13 0.00028 31.5 4.9 95 53-160 185-284 (366)
438 PRK07097 gluconate 5-dehydroge 66.0 42 0.00092 26.7 7.8 80 52-134 8-97 (265)
439 PRK06914 short chain dehydroge 65.5 39 0.00085 27.0 7.6 78 54-133 3-90 (280)
440 PRK07677 short chain dehydroge 65.1 42 0.00092 26.4 7.6 75 55-132 2-86 (252)
441 KOG0022 Alcohol dehydrogenase, 65.0 14 0.00029 31.1 4.6 96 52-160 191-293 (375)
442 PRK07877 hypothetical protein; 64.9 28 0.00061 32.7 7.2 77 52-130 105-202 (722)
443 COG0771 MurD UDP-N-acetylmuram 64.9 93 0.002 27.5 10.0 122 53-186 6-141 (448)
444 COG4627 Uncharacterized protei 64.9 3.4 7.5E-05 30.9 1.1 38 121-158 44-83 (185)
445 PRK07478 short chain dehydroge 64.2 47 0.001 26.1 7.8 79 52-133 4-92 (254)
446 PRK08293 3-hydroxybutyryl-CoA 64.2 45 0.00098 27.2 7.8 90 56-155 5-114 (287)
447 cd01491 Ube1_repeat1 Ubiquitin 64.1 82 0.0018 26.0 9.6 34 53-86 18-53 (286)
448 cd08234 threonine_DH_like L-th 64.0 80 0.0017 25.9 9.5 94 52-160 158-256 (334)
449 PRK00258 aroE shikimate 5-dehy 63.9 79 0.0017 25.8 9.3 117 51-185 120-241 (278)
450 TIGR00518 alaDH alanine dehydr 63.9 19 0.00042 30.8 5.6 41 52-93 165-208 (370)
451 PRK06940 short chain dehydroge 63.6 76 0.0017 25.5 11.3 100 56-160 4-124 (275)
452 PRK06935 2-deoxy-D-gluconate 3 63.6 60 0.0013 25.6 8.3 79 52-133 13-100 (258)
453 COG3392 Adenine-specific DNA m 63.5 9.8 0.00021 31.0 3.5 36 50-86 24-59 (330)
454 PRK09242 tropinone reductase; 63.4 50 0.0011 26.0 7.7 81 52-133 7-97 (257)
455 TIGR02355 moeB molybdopterin s 63.3 43 0.00093 26.8 7.2 35 52-86 22-58 (240)
456 PRK05600 thiamine biosynthesis 63.2 31 0.00067 29.6 6.7 34 52-85 39-74 (370)
457 cd08294 leukotriene_B4_DH_like 63.1 29 0.00063 28.4 6.5 93 52-160 142-240 (329)
458 TIGR02437 FadB fatty oxidation 62.8 1.3E+02 0.0029 28.3 11.3 90 55-155 314-422 (714)
459 TIGR03206 benzo_BadH 2-hydroxy 62.8 53 0.0012 25.6 7.8 77 53-133 2-89 (250)
460 PRK05717 oxidoreductase; Valid 62.7 74 0.0016 25.0 10.6 78 50-134 6-94 (255)
461 PRK08328 hypothetical protein; 62.5 50 0.0011 26.2 7.5 34 52-85 25-60 (231)
462 COG0604 Qor NADPH:quinone redu 62.4 60 0.0013 27.2 8.3 98 52-162 141-242 (326)
463 COG0773 MurC UDP-N-acetylmuram 62.2 51 0.0011 29.2 7.9 114 56-187 11-139 (459)
464 cd08285 NADP_ADH NADP(H)-depen 61.8 37 0.0008 28.3 7.0 94 52-160 165-265 (351)
465 PRK07453 protochlorophyllide o 61.5 35 0.00076 28.2 6.7 77 53-133 5-92 (322)
466 PRK05808 3-hydroxybutyryl-CoA 61.5 73 0.0016 25.9 8.5 89 56-155 5-112 (282)
467 COG1893 ApbA Ketopantoate redu 61.2 37 0.00081 28.3 6.7 88 56-155 2-95 (307)
468 KOG2539 Mitochondrial/chloropl 61.2 20 0.00044 31.6 5.2 111 49-160 196-314 (491)
469 PRK01710 murD UDP-N-acetylmura 60.9 58 0.0013 28.6 8.3 120 53-185 13-147 (458)
470 cd01492 Aos1_SUMO Ubiquitin ac 60.8 75 0.0016 24.5 9.9 35 52-86 19-55 (197)
471 COG0300 DltE Short-chain dehyd 60.8 71 0.0015 26.1 8.1 82 52-135 4-95 (265)
472 cd08293 PTGR2 Prostaglandin re 60.5 34 0.00073 28.4 6.5 92 55-161 156-254 (345)
473 PRK07340 ornithine cyclodeamin 60.5 41 0.0009 27.9 6.9 70 52-132 123-196 (304)
474 PRK12481 2-deoxy-D-gluconate 3 60.5 52 0.0011 26.0 7.3 78 52-133 6-92 (251)
475 PRK06113 7-alpha-hydroxysteroi 60.4 59 0.0013 25.6 7.7 79 52-133 9-97 (255)
476 PRK10669 putative cation:proto 60.4 95 0.002 28.1 9.7 65 55-130 418-487 (558)
477 PRK06130 3-hydroxybutyryl-CoA 60.2 62 0.0013 26.7 8.0 91 55-155 5-109 (311)
478 TIGR00873 gnd 6-phosphoglucona 60.2 38 0.00082 30.1 6.9 120 60-193 5-128 (467)
479 PF00106 adh_short: short chai 60.1 43 0.00092 24.3 6.4 79 56-136 2-92 (167)
480 PF13561 adh_short_C2: Enoyl-( 59.9 35 0.00075 26.8 6.2 89 69-162 14-134 (241)
481 PRK05708 2-dehydropantoate 2-r 59.9 44 0.00094 27.7 7.0 89 55-155 3-98 (305)
482 PRK11730 fadB multifunctional 59.9 1.6E+02 0.0034 27.8 11.3 90 55-155 314-422 (715)
483 cd05565 PTS_IIB_lactose PTS_II 59.7 36 0.00078 23.2 5.4 64 87-162 16-79 (99)
484 PRK06194 hypothetical protein; 59.7 60 0.0013 26.0 7.7 79 52-134 4-93 (287)
485 PRK05597 molybdopterin biosynt 59.7 35 0.00076 29.0 6.5 78 52-131 26-125 (355)
486 PRK12826 3-ketoacyl-(acyl-carr 59.6 67 0.0015 24.9 7.8 79 52-134 4-93 (251)
487 PRK06197 short chain dehydroge 59.5 63 0.0014 26.4 7.9 81 51-133 13-104 (306)
488 PRK07814 short chain dehydroge 59.3 65 0.0014 25.6 7.8 77 52-132 8-95 (263)
489 PLN02780 ketoreductase/ oxidor 59.2 54 0.0012 27.3 7.5 60 53-113 52-115 (320)
490 PRK07523 gluconate 5-dehydroge 59.2 62 0.0014 25.4 7.6 78 52-133 8-96 (255)
491 PRK09260 3-hydroxybutyryl-CoA 59.0 50 0.0011 27.0 7.1 38 56-94 3-43 (288)
492 PRK09599 6-phosphogluconate de 58.9 1E+02 0.0022 25.4 9.0 119 56-193 2-124 (301)
493 TIGR01692 HIBADH 3-hydroxyisob 58.8 49 0.0011 27.1 7.0 102 71-193 15-120 (288)
494 PRK00421 murC UDP-N-acetylmura 58.7 1.3E+02 0.0028 26.5 11.3 115 52-182 5-134 (461)
495 PRK07417 arogenate dehydrogena 58.5 52 0.0011 26.7 7.1 81 56-155 2-85 (279)
496 PLN02514 cinnamyl-alcohol dehy 58.3 1.1E+02 0.0023 25.8 9.3 94 52-160 179-274 (357)
497 COG0240 GpsA Glycerol-3-phosph 58.2 82 0.0018 26.6 8.2 37 56-93 3-42 (329)
498 PRK08267 short chain dehydroge 58.0 91 0.002 24.5 10.0 73 55-133 2-86 (260)
499 PRK01438 murD UDP-N-acetylmura 57.8 1.3E+02 0.0029 26.4 14.2 122 52-185 14-152 (480)
500 PLN02253 xanthoxin dehydrogena 57.8 50 0.0011 26.4 6.9 76 52-132 16-102 (280)
No 1
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.85 E-value=5.8e-20 Score=145.26 Aligned_cols=178 Identities=19% Similarity=0.195 Sum_probs=139.6
Q ss_pred CeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-h
Q 046623 10 GNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-L 87 (218)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~ 87 (218)
+..+.|.+.+.+|. +-..+..|+.|+.- ....+|||+|||+|.+++.+++. ...+++++|+++ +
T Consensus 15 ~~~~~I~q~~~~~~-----------~~~DaiLL~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~ 80 (248)
T COG4123 15 FKQFFIIQDRCGFR-----------YGTDAILLAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEA 80 (248)
T ss_pred ccceEEEeCCCccc-----------cccHHHHHHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHH
Confidence 34455666555444 44677888888765 34779999999999999999866 547999999999 9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc------------------chHHHHHHHHH
Q 046623 88 LPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE------------------EMVGLGKTLKR 149 (218)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~------------------~~~~~l~~~~~ 149 (218)
.+.|++|.+.|++..+++++..|+...... ....+||+|+||+|++... ..+++++.+.+
T Consensus 81 a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~--~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~ 158 (248)
T COG4123 81 AEMAQRNVALNPLEERIQVIEADIKEFLKA--LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAK 158 (248)
T ss_pred HHHHHHHHHhCcchhceeEehhhHHHhhhc--ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHH
Confidence 999999999999999999999998766432 1345799999999997532 37889999999
Q ss_pred HhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCCCCceeEEEecCC
Q 046623 150 VCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 150 lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~~~~~~l~~~~~~ 207 (218)
+||+||.+. ++... ....+.+..+ .+.+|...++ .++++.++...++|.+..+.
T Consensus 159 ~lk~~G~l~-~V~r~--erl~ei~~~l-~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~ 213 (248)
T COG4123 159 LLKPGGRLA-FVHRP--ERLAEIIELL-KSYNLEPKRIQFVYPKIGKAANRVLVEAIKG 213 (248)
T ss_pred HccCCCEEE-EEecH--HHHHHHHHHH-HhcCCCceEEEEecCCCCCcceEEEEEEecC
Confidence 999999433 33333 3455656666 8889999998 89999999999999766443
No 2
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.83 E-value=8.7e-20 Score=139.16 Aligned_cols=145 Identities=46% Similarity=0.682 Sum_probs=96.8
Q ss_pred ccccccchhHHHHHHHHhcC-------CCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhC--
Q 046623 30 LTGAWLWDSALILAQFISTH-------FDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANG-- 99 (218)
Q Consensus 30 ~~g~~~w~~~~~l~~~l~~~-------~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~-- 99 (218)
..|.++|+++..|++|+.+. ...++.+|||||||+|..++.+++. +..+|+.+|.++.++.++.|++.|+
T Consensus 15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~ 94 (173)
T PF10294_consen 15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSL 94 (173)
T ss_dssp --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT---
T ss_pred CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhcccc
Confidence 46889999999999999883 2367889999999999999999887 6679999999888899999999987
Q ss_pred CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-CChHHHHHHH
Q 046623 100 LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-TRTGDCLHEL 176 (218)
Q Consensus 100 ~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-~~~~~~~~~~ 176 (218)
...++.+..+||.+..........+||+|++++++|..+..+.+++.+.++++++|. ++++...| ....+++..+
T Consensus 95 ~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~--vl~~~~~R~~~~~~F~~~~ 170 (173)
T PF10294_consen 95 LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK--VLLAYKRRRKSEQEFFDRL 170 (173)
T ss_dssp -----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT--EEEEEE-S-TGGCHHHHHH
T ss_pred ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE--EEEEeCEecHHHHHHHHHh
Confidence 567799999999875422222446899999999999999999999999999999995 44444444 4455666555
No 3
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.82 E-value=7.9e-19 Score=133.64 Aligned_cols=146 Identities=23% Similarity=0.283 Sum_probs=113.4
Q ss_pred EEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCC-eEEEecCcc-hHH
Q 046623 12 SIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGAT-RVVLTDVKP-LLP 89 (218)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~-~v~~~D~~~-~~~ 89 (218)
++++.+.+|||++...+ .++..|.+++... ++.+|||+|||+|.+++.+++.... +|+++|+++ +++
T Consensus 1 ~~~~~~~~gvFs~~~~d--------~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~ 69 (170)
T PF05175_consen 1 ELEFITHPGVFSPPRLD--------AGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALE 69 (170)
T ss_dssp EEEEEEETTSTTTTSHH--------HHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHH
T ss_pred CEEEEECCCeeCCCCCC--------HHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence 47888899999966544 6777888888763 6779999999999999999887664 799999999 999
Q ss_pred HHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc-----hHHHHHHHHHHhcCCCceEEEEEee
Q 046623 90 GLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE-----MVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~-----~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
.+++|++.+++.+ ++++..|+.+.. +..+||+|++|+|++...+ ...+++.+.++|+|||.++++...
T Consensus 70 ~a~~n~~~n~~~~-v~~~~~d~~~~~-----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~- 142 (170)
T PF05175_consen 70 LAKRNAERNGLEN-VEVVQSDLFEAL-----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS- 142 (170)
T ss_dssp HHHHHHHHTTCTT-EEEEESSTTTTC-----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET-
T ss_pred HHHHHHHhcCccc-cccccccccccc-----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec-
Confidence 9999999999877 899988876543 4578999999999876543 688999999999999955554432
Q ss_pred ccCChHHHHHHH
Q 046623 165 VRTRTGDCLHEL 176 (218)
Q Consensus 165 ~~~~~~~~~~~~ 176 (218)
.......++..
T Consensus 143 -~~~~~~~l~~~ 153 (170)
T PF05175_consen 143 -HLGYERLLKEL 153 (170)
T ss_dssp -TSCHHHHHHHH
T ss_pred -CCChHHHHHHh
Confidence 23444445554
No 4
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.9e-17 Score=131.79 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=112.6
Q ss_pred CeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-h
Q 046623 10 GNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-L 87 (218)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~ 87 (218)
+.++++.+.+|||+....+ .++..|.+.+.. ..+.+|||+|||.|.+++.+++.. ..+++.+|.|. +
T Consensus 126 ~~~~~~~t~pGVFS~~~lD--------~GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~A 194 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLD--------KGSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARA 194 (300)
T ss_pred cCceEEEeCCCCCcCCCcC--------hHHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHH
Confidence 7889999999999977655 566666665544 344599999999999999998664 47999999999 9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc-----hHHHHHHHHHHhcCCCceEEEEE
Q 046623 88 LPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE-----MVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~-----~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
++.+++|++.|+.++. ++...|.... ..++||.|++|+|||.... ..++++.+.+.|++||.+.+++.
T Consensus 195 v~~ar~Nl~~N~~~~~-~v~~s~~~~~------v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 195 VESARKNLAANGVENT-EVWASNLYEP------VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHHHHhHHHcCCCcc-EEEEeccccc------ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9999999999998753 5555554333 2348999999999986422 34899999999999997777766
Q ss_pred eeccCChHHHHHHH
Q 046623 163 SEVRTRTGDCLHEL 176 (218)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (218)
.. ...+..++++
T Consensus 268 ~~--l~y~~~L~~~ 279 (300)
T COG2813 268 RH--LPYEKKLKEL 279 (300)
T ss_pred CC--CChHHHHHHh
Confidence 22 3344445544
No 5
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.76 E-value=8.2e-17 Score=135.84 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=110.0
Q ss_pred EEEEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEec
Q 046623 5 EIEIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTD 83 (218)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D 83 (218)
++.+.+..+++...+|||+....+ .++.+|.+.+.. ..+.+|||+|||+|.+++.+++.. ..+|+++|
T Consensus 191 ~~~~~~~~~~~~~~~gVFs~~~LD--------~GtrllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD 259 (378)
T PRK15001 191 SWKLEGTDWTIHNHANVFSRTGLD--------IGARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVD 259 (378)
T ss_pred EEEEcCceEEEEecCCccCCCCcC--------hHHHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEE
Confidence 577889999999999999986655 666666666554 234699999999999999997653 46999999
Q ss_pred Ccc-hHHHHHHHHHHhCCC--CceEEEEeecCCCCccccccCCCCcEEEEcccccCC-----cchHHHHHHHHHHhcCCC
Q 046623 84 VKP-LLPGLINNVEANGLG--GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP-----EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 84 ~~~-~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-----~~~~~~l~~~~~lL~~gG 155 (218)
.|+ +++.+++|++.++.. .++++...|..... +..+||+|++|+|+|.. ....+++..+.++|+|||
T Consensus 260 ~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 260 ESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred CCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-----CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC
Confidence 999 999999999888743 25677776654321 34579999999998753 235678899999999999
Q ss_pred ceEEEE
Q 046623 156 HTVVWA 161 (218)
Q Consensus 156 ~~~i~~ 161 (218)
.+.++.
T Consensus 335 ~L~iV~ 340 (378)
T PRK15001 335 ELYIVA 340 (378)
T ss_pred EEEEEE
Confidence 555553
No 6
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.71 E-value=1.1e-15 Score=117.21 Aligned_cols=136 Identities=21% Similarity=0.340 Sum_probs=103.1
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
.+..|...+.. .++.+|||+|||+|.++..++..+. +++++|+++ +++.+++|+..++. +++++.+|+.+.
T Consensus 7 d~~~l~~~l~~---~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-- 78 (179)
T TIGR00537 7 DSLLLEANLRE---LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKG-- 78 (179)
T ss_pred cHHHHHHHHHh---cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccc--
Confidence 34555555543 4567899999999999999988876 999999999 99999999988875 378888887553
Q ss_pred cccccCCCCcEEEEcccccCCcc---------------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHH
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEE---------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHE 175 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~---------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~ 175 (218)
..++||+|++++|+++... ...+++.+.++|+|||.++++.. ......+.+..
T Consensus 79 ----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~--~~~~~~~~~~~ 152 (179)
T TIGR00537 79 ----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS--SLNGEPDTFDK 152 (179)
T ss_pred ----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe--ccCChHHHHHH
Confidence 2358999999998864322 46789999999999994444332 22335566666
Q ss_pred HHHhCCcEEEEEE
Q 046623 176 LIMSQGFRVIELT 188 (218)
Q Consensus 176 ~~~~~gf~~~~~~ 188 (218)
+ .+.||....+.
T Consensus 153 l-~~~gf~~~~~~ 164 (179)
T TIGR00537 153 L-DERGFRYEIVA 164 (179)
T ss_pred H-HhCCCeEEEEE
Confidence 6 88999988873
No 7
>PRK14967 putative methyltransferase; Provisional
Probab=99.71 E-value=1e-15 Score=121.43 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=112.2
Q ss_pred EEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHH
Q 046623 13 IIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGL 91 (218)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a 91 (218)
+++...+++|-+. ..+..+..++......++.+|||+|||+|.+++.+++.+..+++++|+++ +++.+
T Consensus 7 ~~~~~~~g~~~p~-----------~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a 75 (223)
T PRK14967 7 DALLRAPGVYRPQ-----------EDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSA 75 (223)
T ss_pred ceeecCCCCcCCC-----------CcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHH
Confidence 4556666777655 34566777776544456789999999999999999877666999999999 99999
Q ss_pred HHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc---------------------hHHHHHHHHHH
Q 046623 92 INNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE---------------------MVGLGKTLKRV 150 (218)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~---------------------~~~~l~~~~~l 150 (218)
++|+..++.. +.++..|+.+.. +.++||+|++++|+..... .+.+++.+.++
T Consensus 76 ~~n~~~~~~~--~~~~~~d~~~~~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 148 (223)
T PRK14967 76 RLNALLAGVD--VDVRRGDWARAV-----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPAL 148 (223)
T ss_pred HHHHHHhCCe--eEEEECchhhhc-----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHh
Confidence 9999888753 778877765431 4568999999987653211 45678889999
Q ss_pred hcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 151 CGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 151 L~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|++||.++++.... ....+.+..+ ++.+|.+...
T Consensus 149 Lk~gG~l~~~~~~~--~~~~~~~~~l-~~~g~~~~~~ 182 (223)
T PRK14967 149 LAPGGSLLLVQSEL--SGVERTLTRL-SEAGLDAEVV 182 (223)
T ss_pred cCCCcEEEEEEecc--cCHHHHHHHH-HHCCCCeEEE
Confidence 99999544433322 3445666665 8888876665
No 8
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.3e-16 Score=127.08 Aligned_cols=145 Identities=23% Similarity=0.382 Sum_probs=106.4
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
|...++++..-.+++.+. ..++.+|||+|||||.+++.+++.|+.+++++|++| +++.++.|++.|++...++....+
T Consensus 142 GTG~HpTT~lcL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~ 220 (300)
T COG2264 142 GTGTHPTTSLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFL 220 (300)
T ss_pred CCCCChhHHHHHHHHHHh-hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhccccc
Confidence 445566666666666553 247889999999999999999999999999999999 999999999999987422222211
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
. ......++||+|++|- +- .-...+...+.++++||| .++.+.......+.....+ ...||.+..+.
T Consensus 221 ~-----~~~~~~~~~DvIVANI-LA--~vl~~La~~~~~~lkpgg--~lIlSGIl~~q~~~V~~a~-~~~gf~v~~~~ 287 (300)
T COG2264 221 L-----LEVPENGPFDVIVANI-LA--EVLVELAPDIKRLLKPGG--RLILSGILEDQAESVAEAY-EQAGFEVVEVL 287 (300)
T ss_pred c-----hhhcccCcccEEEehh-hH--HHHHHHHHHHHHHcCCCc--eEEEEeehHhHHHHHHHHH-HhCCCeEeEEE
Confidence 1 1122346999999954 32 345678889999999999 4455555555555555555 88999998873
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.70 E-value=6.6e-17 Score=126.13 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=89.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||.|.++..+|+.|+ +|+++|+++ .++.|+....++++. +++.....++... ..++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~----~~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS----AGGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh----cCCCccEEEE
Confidence 6889999999999999999999996 999999999 999999999998865 5555544443332 3379999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
.+++.|.++++.++..+.+++|||| .++.++..|
T Consensus 131 mEVlEHv~dp~~~~~~c~~lvkP~G--~lf~STinr 164 (243)
T COG2227 131 MEVLEHVPDPESFLRACAKLVKPGG--ILFLSTINR 164 (243)
T ss_pred hhHHHccCCHHHHHHHHHHHcCCCc--EEEEecccc
Confidence 9999999999999999999999999 444444434
No 10
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.70 E-value=2.5e-16 Score=128.80 Aligned_cols=141 Identities=25% Similarity=0.423 Sum_probs=105.8
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 31 TGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
.|...++++..-.+++.+. ..++++|||+|||||.+++.+++.|+.+|+++|+++ +++.++.|++.|++..++.+.
T Consensus 140 FGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-- 216 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-- 216 (295)
T ss_dssp S-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--
T ss_pred ccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--
Confidence 4556678888888887764 346789999999999999999999999999999999 999999999999998766552
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..... ...+||+|++|-.. ..+..++..+.++|+||| .++++........+..+.+ ++ ||.+...
T Consensus 217 --~~~~~----~~~~~dlvvANI~~---~vL~~l~~~~~~~l~~~G--~lIlSGIl~~~~~~v~~a~-~~-g~~~~~~ 281 (295)
T PF06325_consen 217 --LSEDL----VEGKFDLVVANILA---DVLLELAPDIASLLKPGG--YLILSGILEEQEDEVIEAY-KQ-GFELVEE 281 (295)
T ss_dssp --CTSCT----CCS-EEEEEEES-H---HHHHHHHHHCHHHEEEEE--EEEEEEEEGGGHHHHHHHH-HT-TEEEEEE
T ss_pred --Eeccc----ccccCCEEEECCCH---HHHHHHHHHHHHhhCCCC--EEEEccccHHHHHHHHHHH-HC-CCEEEEE
Confidence 11111 34889999996432 345678888899999999 5555666566666666655 65 9998776
No 11
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.69 E-value=2.4e-15 Score=115.79 Aligned_cols=136 Identities=21% Similarity=0.172 Sum_probs=102.3
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|..++.+++ .+..+|+++|+++ +++.++++.+.++..+ ++++.+|..+.. ..++||+|++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~-----~~~~fDlV~~ 118 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFG-----QEEKFDVVTS 118 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCC-----CCCCccEEEE
Confidence 378999999999999998875 4456999999999 9999999999998865 899998876543 2468999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVY 202 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~ 202 (218)
+.. ..+..+++.+.++|+|||.++++.. ......+..+-+..|+.+..+....-+|....+.+.
T Consensus 119 ~~~----~~~~~~l~~~~~~LkpGG~lv~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (187)
T PRK00107 119 RAV----ASLSDLVELCLPLLKPGGRFLALKG----RDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLV 182 (187)
T ss_pred ccc----cCHHHHHHHHHHhcCCCeEEEEEeC----CChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEE
Confidence 642 5678999999999999995544432 233344444436679998888655555544434433
No 12
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.69 E-value=2.7e-15 Score=123.98 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=105.3
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
-|.+.......+......++++|||+|||+|.++..++..++.+|+++|+++ ++..+.......+...++.+..+++.+
T Consensus 103 e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 3666666666666555577899999999999999988888877899999999 876654332222222457777776655
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee---c------------------cCChHHH
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE---V------------------RTRTGDC 172 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~---~------------------~~~~~~~ 172 (218)
.. ...+||+|+++.+++|..++..+++.++++|+|||.+++-.... . .....+
T Consensus 183 lp-----~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~- 256 (314)
T TIGR00452 183 LH-----ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSA- 256 (314)
T ss_pred CC-----CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHH-
Confidence 43 23579999999999999999999999999999999555431110 0 011333
Q ss_pred HHHHHHhCCcEEEEE
Q 046623 173 LHELIMSQGFRVIEL 187 (218)
Q Consensus 173 ~~~~~~~~gf~~~~~ 187 (218)
+...+++.||..+++
T Consensus 257 L~~~L~~aGF~~V~i 271 (314)
T TIGR00452 257 LKNWLEKVGFENFRI 271 (314)
T ss_pred HHHHHHHCCCeEEEE
Confidence 344459999998876
No 13
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.68 E-value=2.4e-16 Score=111.46 Aligned_cols=100 Identities=27% Similarity=0.337 Sum_probs=81.8
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
|+.+|||+|||+|..++.+++ .+..+++++|+++ +++.+++++...+...+++++..|+ .... ...++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~---~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP---DFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT---TTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc---ccCCCCCEEEE
Confidence 578999999999999999987 4556999999999 9999999997777778899999988 2111 14467999999
Q ss_pred cc-cccCC---cchHHHHHHHHHHhcCCCc
Q 046623 131 SD-VFYDP---EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 131 ~~-~~~~~---~~~~~~l~~~~~lL~~gG~ 156 (218)
.. ..++. ++..++++.+.++|+|||.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcE
Confidence 88 33322 4568899999999999993
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.68 E-value=7.8e-16 Score=127.71 Aligned_cols=131 Identities=19% Similarity=0.180 Sum_probs=101.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +|+++|.++ +++.++.+....+...++.++.+|.++... ..++||+|++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~----~~~~FD~Vi~ 204 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD----EGRKFDAVLS 204 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh----ccCCCCEEEE
Confidence 3567999999999999999988765 899999999 999999887665544468888877655432 4578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeec--------------------------cCChHHHHHHHHHhCCcEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV--------------------------RTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~--------------------------~~~~~~~~~~~~~~~gf~~ 184 (218)
..+++|..+...+++.+.++|||||.+++...... +....+.+..++++.||.+
T Consensus 205 ~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i 284 (322)
T PLN02396 205 LEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDV 284 (322)
T ss_pred hhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeE
Confidence 99999999999999999999999994443321100 0123455566669999999
Q ss_pred EEE
Q 046623 185 IEL 187 (218)
Q Consensus 185 ~~~ 187 (218)
.++
T Consensus 285 ~~~ 287 (322)
T PLN02396 285 KEM 287 (322)
T ss_pred EEE
Confidence 887
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.68 E-value=1.5e-15 Score=122.91 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=89.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +|+++|+++ +++.++++....++..++.++.+|+.+... ...++||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~---~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ---HLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh---hcCCCCCEEEe
Confidence 3567999999999999999998865 999999999 999999999888876678898887765421 14578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..++++..++..+++.+.++|+|||.+++.
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 999999889999999999999999965544
No 16
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=6e-16 Score=122.44 Aligned_cols=103 Identities=22% Similarity=0.212 Sum_probs=94.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
+|.+|||+|||||-.++.+++. |..+|+++|+|+ +++.+++.....+..+ ++++.+|.+..+. ++++||+|.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf----~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF----PDNSFDAVTI 125 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC----CCCccCEEEe
Confidence 7899999999999999999754 556999999999 9999999998877766 9999999998886 8899999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+..+.+..+.++.++++.|.|||||+++++
T Consensus 126 ~fglrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 126 SFGLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred eehhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 999999999999999999999999966666
No 17
>PLN02244 tocopherol O-methyltransferase
Probab=99.67 E-value=5.8e-15 Score=124.07 Aligned_cols=105 Identities=20% Similarity=0.199 Sum_probs=91.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++....+|+++|+++ +++.++++.+..+..+++.++.+|..+... +.++||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~----~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF----EDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC----CCCCccEEEE
Confidence 46789999999999999999875344999999999 999999999888877779999999876544 5678999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
...+++..+...+++++.++|||||.+++.
T Consensus 193 ~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 193 MESGEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred CCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 999999899999999999999999955554
No 18
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.66 E-value=2.5e-15 Score=125.95 Aligned_cols=132 Identities=27% Similarity=0.286 Sum_probs=99.7
Q ss_pred EEEEEeccCcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHH
Q 046623 12 SIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLP 89 (218)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~ 89 (218)
.+++...++||+....+ .++..+...+.. ....+|||+|||+|.++..+++.. ..+++++|+++ +++
T Consensus 166 ~l~i~~~pgvFs~~~lD--------~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~ 234 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLD--------VGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALE 234 (342)
T ss_pred CEEEEeCCCCCCCCCCC--------HHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 46777788888865433 444555554432 234589999999999999998664 35899999999 999
Q ss_pred HHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC-----cchHHHHHHHHHHhcCCCceEEEEE
Q 046623 90 GLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP-----EEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-----~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.++.|++.+++. ..++..|.... ..++||+|++|+|+|.. .....++..+.++|+|||.+.++..
T Consensus 235 ~A~~nl~~n~l~--~~~~~~D~~~~------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 235 SSRATLAANGLE--GEVFASNVFSD------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred HHHHHHHHcCCC--CEEEEcccccc------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999999998865 46666665432 34689999999999863 3468899999999999996665544
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=6.7e-15 Score=122.64 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=104.9
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
|.+.......+......++++|||+|||+|..+..++..++.+|+++|.++ ++..++......+...++.++.+|+.+.
T Consensus 105 w~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l 184 (322)
T PRK15068 105 WRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL 184 (322)
T ss_pred ehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC
Confidence 555555444444444467889999999999999999888877899999999 7765444333222234588888887654
Q ss_pred CccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee-----------cc----------CChHHHH
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE-----------VR----------TRTGDCL 173 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~-----------~~----------~~~~~~~ 173 (218)
. ..++||+|++..++||..++..+++.+.+.|+|||.+++-.... .+ ....+..
T Consensus 185 p-----~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~ 259 (322)
T PRK15068 185 P-----ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALK 259 (322)
T ss_pred C-----CcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHH
Confidence 3 25679999999999999999999999999999999554321100 00 1233444
Q ss_pred HHHHHhCCcEEEEE
Q 046623 174 HELIMSQGFRVIEL 187 (218)
Q Consensus 174 ~~~~~~~gf~~~~~ 187 (218)
.++ .+.||...++
T Consensus 260 ~~L-~~aGF~~i~~ 272 (322)
T PRK15068 260 NWL-ERAGFKDVRI 272 (322)
T ss_pred HHH-HHcCCceEEE
Confidence 555 9999998887
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.66 E-value=4.3e-15 Score=114.03 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=94.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.++... ..+|+++|.++ +++.++++.+.++.. +++++.+|+.+.. ..++||+|+
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-----~~~~fD~I~ 114 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-----HEEQFDVIT 114 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-----ccCCccEEE
Confidence 457899999999999999987654 35899999999 999999999888875 4899998886642 357899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
++. + ..+..+++.+.++|+|||.++++.............+.+ ...||+.++.+....+
T Consensus 115 s~~-~---~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 115 SRA-L---ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKC-QVLGVEPLEVPPLTGP 173 (181)
T ss_pred ehh-h---hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhh-hhcCceEeeccccCCC
Confidence 865 3 456778899999999999554442211111122222222 3468888887554443
No 21
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.4e-14 Score=116.95 Aligned_cols=151 Identities=22% Similarity=0.306 Sum_probs=104.9
Q ss_pred EEcCeEEEEEeccCcCCCCccccccccccchhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecC
Q 046623 7 EIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDV 84 (218)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~ 84 (218)
++.+-++.+ -++||-|.+ .+..|.+.+.. ...... +|||+|||||.+++.++.... .+|+++|+
T Consensus 77 ~f~gl~~~v--~~~vliPr~-----------dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Di 142 (280)
T COG2890 77 EFGGLRFKV--DEGVLIPRP-----------DTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDI 142 (280)
T ss_pred eecceeeee--CCCceecCC-----------chHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEEC
Confidence 344444444 447888774 33444444332 111112 899999999999999986654 59999999
Q ss_pred cc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc-------------------------
Q 046623 85 KP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE------------------------- 138 (218)
Q Consensus 85 ~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~------------------------- 138 (218)
|+ |++.|+.|+..+++ .++.++..||.... .++||+|++|+|+-..+
T Consensus 143 s~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~ 215 (280)
T COG2890 143 SPDALALARENAERNGL-VRVLVVQSDLFEPL------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLE 215 (280)
T ss_pred CHHHHHHHHHHHHHcCC-ccEEEEeeeccccc------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHH
Confidence 99 99999999999998 55667776776653 34899999999985432
Q ss_pred chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCc
Q 046623 139 EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 139 ~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf 182 (218)
....++..+.+.|+||| ++++... ....+.+..++.+.++
T Consensus 216 ~~~~i~~~a~~~l~~~g--~l~le~g--~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 216 VYRRILGEAPDILKPGG--VLILEIG--LTQGEAVKALFEDTGF 255 (280)
T ss_pred HHHHHHHhhHHHcCCCc--EEEEEEC--CCcHHHHHHHHHhcCC
Confidence 15668888889999988 3333222 3345556666688885
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=3.5e-15 Score=111.47 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=87.4
Q ss_pred CCCeEEEECCCCCHHHHHHH-Hh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
++.+|||+|||+|.++..++ +. +..+++++|+++ +++.++++++..+.+ +++++.+|+.+... . .+ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~-~-~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ-E-LE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG-C-SS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc-c-cC-CCeeEEE
Confidence 56799999999999999998 43 346999999999 999999999998887 69999999988331 1 12 7899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++.++++..+...+++.+.++|+++|.+++.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999899999999999999999944333
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=1.9e-14 Score=112.03 Aligned_cols=102 Identities=22% Similarity=0.264 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+. +|+++|+|+ +++.++++.+..++. ++++...|+.+.. ..++||+|++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~-----~~~~fD~I~~ 101 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT-----FDGEYDFILS 101 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC-----cCCCcCEEEE
Confidence 4567999999999999999998865 999999999 999999998887764 3777777776543 2457999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++++. ++...+++.+.++|+|||.++++
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9887654 46789999999999999954444
No 24
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=1.4e-14 Score=116.79 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=94.8
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
....+|.+|||||||+|.+++.+|+.-..+|+++++|+ +.+.+++.++..|++.+++++..|+.+.. +.||-
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-------e~fDr 140 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-------EPFDR 140 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-------cccce
Confidence 45578999999999999999999876444999999999 99999999999999888999998887653 44999
Q ss_pred EEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeec
Q 046623 128 VIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEV 165 (218)
Q Consensus 128 Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~ 165 (218)
|++..++.+... ...+++.+.++|+|||.+++...+..
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 999999988654 99999999999999997776655443
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.63 E-value=1.5e-15 Score=103.69 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=77.9
Q ss_pred EEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccC
Q 046623 58 LELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~ 136 (218)
||+|||+|..+..+++.+..+++++|+++ +++.++++....+ +.+...|..+... +.++||+|+++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~----~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPF----PDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-----TT-EEEEEEESHGGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcc----ccccccccccccceee
Confidence 89999999999999888666999999999 9999988875543 5688888887765 7789999999999999
Q ss_pred CcchHHHHHHHHHHhcCCCceE
Q 046623 137 PEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 137 ~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
.++...+++++.|+|||||.++
T Consensus 73 ~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 73 LEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SSHHHHHHHHHHHHEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCcCeEEe
Confidence 8999999999999999999443
No 26
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.63 E-value=1.4e-14 Score=117.43 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=85.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHH--hCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEA--NGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++.+|||+|||+|.++..+++. +. .+|+++|+++ +++.++++... .....+++++.+|..+.+. +.++||
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~----~~~sfD 147 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF----DDCYFD 147 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC----CCCCEe
Confidence 46789999999999999888764 32 5899999999 99999876532 2222458899988876654 567899
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.|+++..+++..++..++.++.++|||||.+++.
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 9999999999899999999999999999955554
No 27
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.63 E-value=3.7e-14 Score=112.99 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=86.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. + ..+++++|+++ +++.++++.+..+. .+++++.+|...... +.++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~----~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF----DDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC----CCCCccEE
Confidence 45789999999999999988754 3 35899999999 99999999887766 358888888766543 55789999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++.++++.++..++++.+.++|+|||.+++.
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 99988888889999999999999999954443
No 28
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.62 E-value=1.8e-14 Score=118.48 Aligned_cols=139 Identities=21% Similarity=0.358 Sum_probs=100.4
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.++++....+++... ..++.+|||+|||+|.+++.+++.|+.+++++|+++ +++.+++|...+++...+.+...+...
T Consensus 142 ~h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~ 220 (288)
T TIGR00406 142 THPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ 220 (288)
T ss_pred CCHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc
Confidence 446666555555542 246789999999999999998888878999999999 999999999999887666666544211
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
. ..++||+|+++... .....++..+.++|+||| .++++........+....+ .+. |.+..+
T Consensus 221 --~----~~~~fDlVvan~~~---~~l~~ll~~~~~~LkpgG--~li~sgi~~~~~~~v~~~~-~~~-f~~~~~ 281 (288)
T TIGR00406 221 --P----IEGKADVIVANILA---EVIKELYPQFSRLVKPGG--WLILSGILETQAQSVCDAY-EQG-FTVVEI 281 (288)
T ss_pred --c----cCCCceEEEEecCH---HHHHHHHHHHHHHcCCCc--EEEEEeCcHhHHHHHHHHH-Hcc-CceeeE
Confidence 1 34689999996542 345678899999999999 4444444444455555555 555 877665
No 29
>PRK14968 putative methyltransferase; Provisional
Probab=99.62 E-value=5.5e-14 Score=108.25 Aligned_cols=140 Identities=22% Similarity=0.297 Sum_probs=102.7
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCc-eEEEEeecCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGR-VEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~-~~~~~~d~~~~ 114 (218)
+.+..+..++.. .++.+|||+|||+|.++..+++.+ .+++++|+++ +++.+++++..++..++ +.++..|+.+.
T Consensus 10 ~~~~~l~~~~~~---~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 10 EDSFLLAENAVD---KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP 85 (188)
T ss_pred hhHHHHHHhhhc---cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc
Confidence 555666666654 467799999999999999998775 5999999999 99999999988776543 77888877553
Q ss_pred CccccccCCCCcEEEEcccccCC---------------------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHH
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDP---------------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCL 173 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~---------------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~ 173 (218)
. ...+||+|++++++... .....+++.+.++|+|||.++++.... ... +.+
T Consensus 86 ~-----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--~~~-~~l 157 (188)
T PRK14968 86 F-----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--TGE-DEV 157 (188)
T ss_pred c-----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--CCH-HHH
Confidence 2 33489999998887541 124668899999999999554444322 223 334
Q ss_pred HHHHHhCCcEEEEEE
Q 046623 174 HELIMSQGFRVIELT 188 (218)
Q Consensus 174 ~~~~~~~gf~~~~~~ 188 (218)
..++.+.||.+..+.
T Consensus 158 ~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 158 LEYLEKLGFEAEVVA 172 (188)
T ss_pred HHHHHHCCCeeeeee
Confidence 455588999887763
No 30
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.62 E-value=3.2e-14 Score=115.75 Aligned_cols=104 Identities=22% Similarity=0.247 Sum_probs=82.2
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
....+|.+|||||||+|.+++.+++. |+ +|+++.+|+ ..+.+++.++..++.+++++...|+.+. ..+||
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-------~~~fD 129 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-------PGKFD 129 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------S-S
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------CCCCC
Confidence 44468899999999999999999866 65 999999999 9999999999999988899998887543 23899
Q ss_pred EEEEcccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.|++..++.+. .....+++.+.++|+|||.+++.
T Consensus 130 ~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 130 RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999886 56799999999999999966544
No 31
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=6.2e-15 Score=117.38 Aligned_cols=108 Identities=22% Similarity=0.212 Sum_probs=81.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. + ..+|+++|+|+ +++.+++..+..+.. +++++.+|.++.+. ++++||.|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~----~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF----PDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-----TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC----CCCceeEE
Confidence 56789999999999999998764 3 25899999999 999999999887765 69999999888776 77999999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
++...+++..+....++++.|+|||||.++++-...
T Consensus 121 ~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 121 TCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp EEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 999999998999999999999999999666664444
No 32
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.61 E-value=2e-15 Score=107.62 Aligned_cols=106 Identities=26% Similarity=0.267 Sum_probs=85.4
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
|.+|||+|||+|.+++.+++.+..+++++|+++ +++.++.++..++...+++++.+|+.+.. .....++||+|++|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhccCceeEEEEECC
Confidence 468999999999999999888756999999999 99999999999988778999999876543 112568899999999
Q ss_pred cccCC--------cchHHHHHHHHHHhcCCCceEEEE
Q 046623 133 VFYDP--------EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 133 ~~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+... .....+++.+.++|+|||.+.++.
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98742 235788999999999999555543
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.60 E-value=1.9e-14 Score=111.91 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=82.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..++.+++.+. +|+++|+++ +++.++++.+.+++. +.+...|+.... ..++||+|++
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~-----~~~~fD~I~~ 100 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA-----LNEDYDFIFS 100 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc-----ccCCCCEEEE
Confidence 4567999999999999999998875 999999999 999999988887764 666666654322 2357999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++++. ++...+++.+.++|+|||.++++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 8888764 46789999999999999954544
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.60 E-value=4.1e-14 Score=112.22 Aligned_cols=128 Identities=22% Similarity=0.205 Sum_probs=100.0
Q ss_pred CeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
++|||+|||+|..+..+++.. ..+++++|+++ +++.+++++...++..++.+...|..... ..++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-----~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-----FPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-----CCCCCCEeehHH
Confidence 479999999999999887653 45899999999 99999999988888778899988876543 235899999999
Q ss_pred cccCCcchHHHHHHHHHHhcCCCceEEEEEeec------------cCChHHHHHHHHHhCCcEEEEE
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV------------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~------------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++++..+...+++.+.++|+|||.+++...... .....+.+..++.+.||.+.+.
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 999988999999999999999995444322110 0112233445558999999876
No 35
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.60 E-value=4e-14 Score=114.21 Aligned_cols=134 Identities=21% Similarity=0.332 Sum_probs=97.4
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.++.+..+.+.+... ..++.+|||+|||+|.+++.+++.++.+++++|+++ +++.+++|++.+++...+.+..+
T Consensus 102 ~h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~---- 176 (250)
T PRK00517 102 THPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG---- 176 (250)
T ss_pred CCHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC----
Confidence 355666666666542 246789999999999999988888877799999999 99999999999876433333211
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..+||+|+++... .....++..+.++|+||| .+++.........+....+ .+.||.+..+
T Consensus 177 --------~~~fD~Vvani~~---~~~~~l~~~~~~~LkpgG--~lilsgi~~~~~~~v~~~l-~~~Gf~~~~~ 236 (250)
T PRK00517 177 --------DLKADVIVANILA---NPLLELAPDLARLLKPGG--RLILSGILEEQADEVLEAY-EEAGFTLDEV 236 (250)
T ss_pred --------CCCcCEEEEcCcH---HHHHHHHHHHHHhcCCCc--EEEEEECcHhhHHHHHHHH-HHCCCEEEEE
Confidence 1269999986432 345678899999999999 4444444444455555555 8899998876
No 36
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.60 E-value=5.5e-14 Score=114.18 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=86.0
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
...++......++.+|||+|||+|..+..+++....+|+++|+++ +++.++++... ..++.+..+|+.....
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~---- 113 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDF---- 113 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCC----
Confidence 333333333457789999999999999888754344999999999 99999887654 2458888888765443
Q ss_pred cCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEE
Q 046623 121 ELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.++||+|++.+.+++.. +...+++.+.++|+|||.+++.
T Consensus 114 ~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 114 PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 567899999988776653 7899999999999999955443
No 37
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.59 E-value=2e-13 Score=111.93 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=93.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++.+|||+|||+|.+++.+++.. ..+++++|+|+ +++.+++|++.+++.+++.++.+|+.+.. +.++||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-----~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-----PGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-----CCCCccEEEE
Confidence 45689999999999999998653 35999999999 99999999999988777999998875432 3457999999
Q ss_pred cccccCCc-------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 131 SDVFYDPE-------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 131 ~~~~~~~~-------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
|+|+.... ....++..+.++|+|||. +++... ... +.+..++.+.+|.+.
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~--l~~e~g--~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV--LVVEVG--NSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE--EEEEEC--cCH-HHHHHHHHhCCCcee
Confidence 98874321 135678888999999993 333322 223 345555577888775
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
..
T Consensus 271 ~~ 272 (284)
T TIGR03533 271 EF 272 (284)
T ss_pred ee
Confidence 44
No 38
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.59 E-value=3.4e-13 Score=114.41 Aligned_cols=141 Identities=20% Similarity=0.292 Sum_probs=99.4
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+.+..+.+.+.... .++.+|||+|||+|.+++.+++. +..+++++|+|+ +++.+++|++.++. ++.++.+|+.+.
T Consensus 236 peTE~LVe~aL~~l-~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~ 312 (423)
T PRK14966 236 PETEHLVEAVLARL-PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDT 312 (423)
T ss_pred ccHHHHHHHhhhcc-CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhcc
Confidence 44455666655421 24569999999999999998754 456999999999 99999999988874 589999988654
Q ss_pred CccccccCCCCcEEEEcccccCCc-------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCCh
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPE-------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRT 169 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~-------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~ 169 (218)
... ..++||+|++|+|+.... ....+++.+.+.|+|||.+++-+ . ...
T Consensus 313 ~l~---~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi--G--~~Q 385 (423)
T PRK14966 313 DMP---SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH--G--FDQ 385 (423)
T ss_pred ccc---cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE--C--ccH
Confidence 320 235799999999874321 13467777788999999332222 2 344
Q ss_pred HHHHHHHHHhCCcEEEEE
Q 046623 170 GDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 170 ~~~~~~~~~~~gf~~~~~ 187 (218)
.+.+..++.+.||....+
T Consensus 386 ~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 386 GAAVRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 455666658889875554
No 39
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.58 E-value=3.5e-13 Score=107.50 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=87.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++.... .+++++|+++ +++.+++++..++...++.+..+|+.+... ..++||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF----PDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC----CCCCccEE
Confidence 3568999999999999999877653 6999999999 999999998776555668888888766543 45689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++..+++..+...+++.+.++|+|||.+++.
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 99988888899999999999999999954443
No 40
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.58 E-value=4.1e-15 Score=117.07 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=79.5
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCC-----ceEEEEeecCCCCccccccCCCCcE
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGG-----RVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
|.+|||+|||+|.++..+++.|+ .|+|+|.++ +++.|+......-..+ ++++...|.++. .+.||.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------~~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------TGKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------ccccce
Confidence 47899999999999999999987 999999999 9999988854443322 244444444433 356999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
|+|+.+++|.+++..++..+.++|+|+|++++
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred eeeHHHHHHHhCHHHHHHHHHHHhCCCCceEe
Confidence 99999999999999999999999999994443
No 41
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.57 E-value=8.9e-13 Score=108.28 Aligned_cols=124 Identities=20% Similarity=0.180 Sum_probs=91.9
Q ss_pred CeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
.+|||+|||+|.+++.++... ..+++++|+++ +++.+++|+..++..++++++.+|+.+.. +..+||+|++|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~-----~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL-----AGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC-----cCCCccEEEECC
Confidence 689999999999999998654 35999999999 99999999999888767999999886532 234799999998
Q ss_pred cccCCc-------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHH-hCCcEEEE
Q 046623 133 VFYDPE-------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIM-SQGFRVIE 186 (218)
Q Consensus 133 ~~~~~~-------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~-~~gf~~~~ 186 (218)
|+.... .+..++..+.++|+||| .+++... ....+.+..++. ..+|....
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG--~l~~e~g--~~q~~~~~~~~~~~~~~~~~~ 266 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNG--FLVCEIG--NWQQKSLKELLRIKFTWYDVE 266 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCC--EEEEEEC--ccHHHHHHHHHHhcCCCceeE
Confidence 774321 24567888899999999 3333322 334455555545 45775433
Q ss_pred E
Q 046623 187 L 187 (218)
Q Consensus 187 ~ 187 (218)
+
T Consensus 267 ~ 267 (284)
T TIGR00536 267 N 267 (284)
T ss_pred E
Confidence 3
No 42
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.57 E-value=2.2e-13 Score=110.20 Aligned_cols=146 Identities=23% Similarity=0.245 Sum_probs=105.1
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
|.|...-.+.....++++|++|||||||+|..+..++..|++.|+|+|.+. ..-+........+....+......+++.
T Consensus 98 WrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L 177 (315)
T PF08003_consen 98 WRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL 177 (315)
T ss_pred ccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc
Confidence 777777777777666789999999999999999999999999999999998 5544332222223222234443333333
Q ss_pred CccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE-----------EEeecc----------CChHHHH
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW-----------AVSEVR----------TRTGDCL 173 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~-----------~~~~~~----------~~~~~~~ 173 (218)
. ..+.||+|++..++||..++-..+..+...|++||.+++= ..+..| +......
T Consensus 178 p-----~~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~ 252 (315)
T PF08003_consen 178 P-----NLGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALK 252 (315)
T ss_pred c-----ccCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHH
Confidence 2 3578999999999999999999999999999999944421 111111 2355555
Q ss_pred HHHHHhCCcEEEEE
Q 046623 174 HELIMSQGFRVIEL 187 (218)
Q Consensus 174 ~~~~~~~gf~~~~~ 187 (218)
.++ ++.||.-.++
T Consensus 253 ~wl-~r~gF~~v~~ 265 (315)
T PF08003_consen 253 NWL-ERAGFKDVRC 265 (315)
T ss_pred HHH-HHcCCceEEE
Confidence 555 9999998776
No 43
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.57 E-value=2.8e-13 Score=109.23 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=94.6
Q ss_pred hHHHHHHHHhcC-C-CCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 38 SALILAQFISTH-F-DFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 38 ~~~~l~~~l~~~-~-~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.+..+.+.+... . ...+.+|||+|||+|.+++.+++. +..+++++|+++ +++.+++|++.++ .+++.+|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh
Confidence 344555554431 1 123458999999999999998754 445899999999 9999999998875 4678888765
Q ss_pred CCccccccCCCCcEEEEcccccCCc--------------------------chHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPE--------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~--------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
..... ..++||+|++|+|+.... .+..+++.+.++|+|||.+++. ... .
T Consensus 145 ~l~~~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~--~ 219 (251)
T TIGR03704 145 ALPTA--LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE-TSE--R 219 (251)
T ss_pred hcchh--cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECc--c
Confidence 32111 135799999999875321 1357788888999999933332 222 2
Q ss_pred ChHHHHHHHHHhCCcEEEEE
Q 046623 168 RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 168 ~~~~~~~~~~~~~gf~~~~~ 187 (218)
...+ +..++.+.||.....
T Consensus 220 ~~~~-v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 220 QAPL-AVEAFARAGLIARVA 238 (251)
T ss_pred hHHH-HHHHHHHCCCCceee
Confidence 3334 444448889877655
No 44
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.56 E-value=9.7e-14 Score=126.56 Aligned_cols=148 Identities=20% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++++|||+|||+|.+++.+++.|+.+|+++|+|+ +++.+++|++.|++. .++.++.+|+.+.... ...+||+|+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~---~~~~fDlIi 613 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE---AREQFDLIF 613 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH---cCCCcCEEE
Confidence 35789999999999999999988887899999999 999999999999986 5789999887543211 245799999
Q ss_pred EcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC----C
Q 046623 130 MSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG----G 194 (218)
Q Consensus 130 ~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~----~ 194 (218)
+++|.+.. .++..++..+.++|+||| .++++...+... ...+.+ .+.|+.+..+.....+ -
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG--~l~~~~~~~~~~-~~~~~~-~~~g~~~~~i~~~~~~~Dhp~ 689 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGG--TLYFSNNKRGFK-MDEEGL-AKLGLKAEEITAKTLPPDFAR 689 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCC--EEEEEeCCccCC-hhHHHH-HhCCCeEEEEecCCCCCCCCC
Confidence 98886532 135678888999999999 333333332222 224444 7888988887433333 4
Q ss_pred CCCceeEEEecC
Q 046623 195 CPEAFAVYELIP 206 (218)
Q Consensus 195 ~~~~~~l~~~~~ 206 (218)
.++++.+|++..
T Consensus 690 ~~~~~~~~~~~~ 701 (702)
T PRK11783 690 NPKIHNCWLITH 701 (702)
T ss_pred CcccceeEEEec
Confidence 567788888764
No 45
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.56 E-value=4.5e-13 Score=104.38 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=96.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
...++.+|||+|||+|.+++.+++. + ..+|+++|+++ +++.+++|++.+++.+++.++.+|..+... ...+.||
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~---~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF---TINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh---hcCCCCC
Confidence 3357789999999999999998754 3 35899999999 999999999998865668888877654321 0236799
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEcc
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
.|+++. ....+..+++.+.++|+|||.+++... ......+....+ ++.||....+.+.
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l-~~~g~~~~~~~~~ 171 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSAL-ENIGFNLEITEVI 171 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHH-HHcCCCeEEEEEe
Confidence 999853 235678899999999999995443222 223445555555 8889865555333
No 46
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.5e-13 Score=102.39 Aligned_cols=131 Identities=27% Similarity=0.312 Sum_probs=97.2
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
.+...+....+..+++|+|+|||||.+++.++..|+.+|+++|+++ +++.+++|.++.+ ..+.++..|..+
T Consensus 33 ~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~------ 104 (198)
T COG2263 33 YILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSD------ 104 (198)
T ss_pred HHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhh------
Confidence 3333333355678899999999999999999999999999999999 9999999998854 559999988765
Q ss_pred ccCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 120 SELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
...++|.+++|+||.... .-.+++..+.++-+ +++. .++....++++....+.|+.+...
T Consensus 105 -~~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~-----vVYs--iH~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 105 -FRGKFDTVIMNPPFGSQRRHADRPFLLKALEISD-----VVYS--IHKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred -cCCccceEEECCCCccccccCCHHHHHHHHHhhh-----eEEE--eeccccHHHHHHHHHhcCCeEEEE
Confidence 446799999999997641 12344444444332 3333 333557778888778899776554
No 47
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.56 E-value=1.9e-13 Score=110.00 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=100.2
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+.+..+.+.+.......+.+|||+|||+|.++..++.. +..+++++|+++ +++.++.++..++.. ++.++.+|+.+.
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 149 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP 149 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc
Confidence 33444545444422234569999999999999999865 345899999999 999999999888775 588998887653
Q ss_pred CccccccCCCCcEEEEcccccCCcc--------------------------hHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPEE--------------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~~--------------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
. +.++||+|++++|+..... ...+++.+.++|+|||.+++.. . ..
T Consensus 150 ~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~--~--~~ 220 (251)
T TIGR03534 150 L-----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI--G--YD 220 (251)
T ss_pred C-----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE--C--cc
Confidence 2 4578999999988764211 2467889999999999433322 2 23
Q ss_pred hHHHHHHHHHhCCcEEEEE
Q 046623 169 TGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~ 187 (218)
..+.+...+.+.||....+
T Consensus 221 ~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 221 QGEAVRALFEAAGFADVET 239 (251)
T ss_pred HHHHHHHHHHhCCCCceEE
Confidence 3344555558889976555
No 48
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.56 E-value=8.4e-14 Score=116.61 Aligned_cols=136 Identities=16% Similarity=0.057 Sum_probs=101.3
Q ss_pred HHHHHHHHhcC-CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 39 ALILAQFISTH-FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 39 ~~~l~~~l~~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
...++..+.+. ...++.+|||+|||+|.+.+.++..+. +++++|+++ ++..++.|++..+..+ +++...|..+...
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~ 244 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL 244 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc
Confidence 34556555542 224677999999999999998877765 899999999 9999999999988876 7888888876543
Q ss_pred cccccCCCCcEEEEcccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 117 SQLSELGEFDMVIMSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..++||.|++++|+... .....+++.+.+.|+|||.++++.... ... ..++++.|| +...
T Consensus 245 ----~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~----~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 245 ----SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDL----ESLAEDAFR-VVKR 313 (329)
T ss_pred ----ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCH----HHHHhhcCc-chhe
Confidence 35789999999887532 125789999999999999666555432 222 233377899 6554
No 49
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.55 E-value=1.7e-13 Score=120.20 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..++.+++....+++++|+|+ +++.++++.... ..++.+..+|+..... +.++||+|++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~----~~~~fD~I~s 338 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTY----PDNSFDVIYS 338 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCC----CCCCEEEEEE
Confidence 45779999999999999988765445899999999 999998887533 3468999988876543 4578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
..++++..+...+++.+.++|+|||.+++
T Consensus 339 ~~~l~h~~d~~~~l~~~~r~LkpgG~l~i 367 (475)
T PLN02336 339 RDTILHIQDKPALFRSFFKWLKPGGKVLI 367 (475)
T ss_pred CCcccccCCHHHHHHHHHHHcCCCeEEEE
Confidence 99999999999999999999999994443
No 50
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.55 E-value=3.3e-13 Score=112.53 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=96.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++. +..+++++|.++ +++.++++... .+++++.+|+.+... +.++||+|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~----~~~sFDvVI 183 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPF----PTDYADRYV 183 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCC----CCCceeEEE
Confidence 35679999999999998888654 446899999999 99998887643 247788888776543 457899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-------------CChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-------------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-------------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++.++++..+...+++++.++|+|||.+++....... ....+.+..++++.||...++
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 9999988888999999999999999955543221100 112344444559999998776
No 51
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.55 E-value=6.7e-13 Score=109.92 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=91.7
Q ss_pred CeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
.+|||+|||+|.+++.++.. +..+++++|+|+ +++.+++|++.+++.++++++.+|+.+.. +.++||+|++|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-----~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-----PGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-----CCCCccEEEECC
Confidence 68999999999999999765 346999999999 99999999999988777999998875432 345799999998
Q ss_pred cccCCc-------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 133 VFYDPE-------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 133 ~~~~~~-------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|+.... ....++..+.++|+|||.+ ++... ....+ +..++.+.+|.+...
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l--~~E~g--~~~~~-~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVL--VVEVG--NSRVH-LEEAYPDVPFTWLEF 284 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEE--EEEEC--cCHHH-HHHHHhhCCCEEEEe
Confidence 864321 1357788889999999933 33222 22333 555556777766554
No 52
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.55 E-value=2.1e-13 Score=111.29 Aligned_cols=103 Identities=25% Similarity=0.288 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. +. .+|+++|+++ +++.++++....+.. ++.+..+|+..... +.++||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~----~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPV----ADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCC----CCCceeEE
Confidence 46789999999999988877543 44 4799999999 999999999887764 58888888766543 45689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+++.++++..+..++++.+.++|+|||.+++
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEE
Confidence 9998888888889999999999999995554
No 53
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5.1e-13 Score=99.70 Aligned_cols=167 Identities=14% Similarity=0.218 Sum_probs=120.1
Q ss_pred eccCcCCCCccccccccccchhHHHHHHHHhcCC----CCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHH
Q 046623 17 ELDNVCDSVTGRPLTGAWLWDSALILAQFISTHF----DFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLP 89 (218)
Q Consensus 17 ~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~----~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~ 89 (218)
.+++||+|. +.++.|.+.+.... ......++|||||+|..+.++++. +...+.++|+|+ |++
T Consensus 14 ~f~dVYEPa-----------EDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~ 82 (209)
T KOG3191|consen 14 DFSDVYEPA-----------EDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALE 82 (209)
T ss_pred hhhhccCcc-----------chhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHH
Confidence 455788887 56677777776611 123568999999999999998654 335789999999 999
Q ss_pred HHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc---------------------chHHHHHHHH
Q 046623 90 GLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE---------------------EMVGLGKTLK 148 (218)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~---------------------~~~~~l~~~~ 148 (218)
..++.++.|+.. ++.+..|+.... ..++.|+++.|+|+--.+ -...++..+-
T Consensus 83 ~Tl~TA~~n~~~--~~~V~tdl~~~l-----~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~ 155 (209)
T KOG3191|consen 83 ATLETARCNRVH--IDVVRTDLLSGL-----RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVP 155 (209)
T ss_pred HHHHHHHhcCCc--cceeehhHHhhh-----ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhh
Confidence 999999999855 788888876654 338999999998874221 1566777788
Q ss_pred HHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecC
Q 046623 149 RVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 149 ~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~ 206 (218)
.+|.|.| +++.....+....+.++.+ ++.||.....-. +....+...+++|.+
T Consensus 156 ~iLSp~G--v~Ylv~~~~N~p~ei~k~l-~~~g~~~~~~~~--Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 156 DILSPRG--VFYLVALRANKPKEILKIL-EKKGYGVRIAMQ--RKAGGETLSILKFTR 208 (209)
T ss_pred hhcCcCc--eEEeeehhhcCHHHHHHHH-hhcccceeEEEE--EecCCceEEEEEEEe
Confidence 8999999 5555555556777877755 899998766522 222334555565543
No 54
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.54 E-value=9.1e-14 Score=118.56 Aligned_cols=105 Identities=20% Similarity=0.104 Sum_probs=82.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++++|||+|||+|.+++.++..++.+|+++|+++ +++.+++|++.|++. .+++++.+|+.+.........++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 35789999999999999987776777999999999 999999999999985 4689999887654211111245799999
Q ss_pred EcccccCCc---------chHHHHHHHHHHhcCCCc
Q 046623 130 MSDVFYDPE---------EMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 130 ~~~~~~~~~---------~~~~~l~~~~~lL~~gG~ 156 (218)
+++|.+... .+..++..+.++|+|||.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~ 334 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGI 334 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 998876432 356667778899999993
No 55
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.54 E-value=6e-13 Score=117.12 Aligned_cols=125 Identities=14% Similarity=0.244 Sum_probs=93.4
Q ss_pred CCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+.+|||+|||+|.+++.+++. +..+++++|+|+ +++.+++|+..+++.+++.++.+|+.... ..++||+|++|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-----~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-----EKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-----cCCCccEEEEC
Confidence 468999999999999988654 556999999999 99999999999888777899988875432 34579999999
Q ss_pred ccccCCc--------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 132 DVFYDPE--------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 132 ~~~~~~~--------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
+|+.... .+..+++.+.++|+|||.+ ++... ....+.+..++.+.||...
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l--~lEig--~~q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKI--ILEIG--FKQEEAVTQIFLDHGYNIE 289 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEE--EEEEC--CchHHHHHHHHHhcCCCce
Confidence 8875321 1345677888899999933 33222 3344555655578888765
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
.+
T Consensus 290 ~~ 291 (506)
T PRK01544 290 SV 291 (506)
T ss_pred EE
Confidence 54
No 56
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=1.8e-13 Score=110.72 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=79.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++.+|||+|||+|.++..+++. +..+|+++|+++ +++.+++. +++++.+|..+.. +.++||+|
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-----~~~~fD~v 93 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-----PKPDTDVV 93 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-----CCCCceEE
Confidence 356789999999999999998765 335899999999 99888653 2678888775432 45689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+++.++++..+...+++.+.++|+|||.+++
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEE
Confidence 9999999988999999999999999995554
No 57
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.53 E-value=1.3e-13 Score=107.75 Aligned_cols=127 Identities=14% Similarity=0.038 Sum_probs=93.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeec-CCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVW-GSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~D~Iv 129 (218)
++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++++..++. .++.++.+|+ .... .....++||.|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHcCccccceEE
Confidence 5679999999999999998765 345899999999 99999999988876 3588998887 3321 111456899999
Q ss_pred EcccccCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 130 MSDVFYDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 130 ~~~~~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
++.+.... .....+++.+.++|+||| .+++.........+.+..+ .+.|+...
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG--~l~i~~~~~~~~~~~~~~~-~~~g~~~~ 177 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGG--EIHFATDWEGYAEYMLEVL-SAEGGFLV 177 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCC--EEEEEcCCHHHHHHHHHHH-HhCccccc
Confidence 86443211 125789999999999999 4444444445565666666 88887665
No 58
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.53 E-value=8.5e-13 Score=114.73 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=113.7
Q ss_pred HHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 39 ALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 39 ~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
+..+.+.+.+ ....++.+|||+|||+|.+++.+++.+ .+|+++|+++ +++.|++|++.+++. +++++.+|+.+...
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhh
Confidence 3445555444 223466899999999999999998876 4999999999 999999999998875 48999999865321
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCC
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGC 195 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~ 195 (218)
......++||+|++++|... ....++.+.+ ++|++ +++++... ......+..+ .+.||.+.++ |+.+.|..
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~--ivyvSCnp-~tlaRDl~~L-~~~gY~l~~i~~~DmFP~T 431 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKR--IVYVSCNP-ATLARDAGVL-VEAGYRLKRAGMLDMFPHT 431 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCe--EEEEEeCh-HHhhccHHHH-hhCCcEEEEEEEeccCCCC
Confidence 11012457999999877532 3456666665 57776 44444332 3344555665 6789999998 99999988
Q ss_pred CCceeEEEecC
Q 046623 196 PEAFAVYELIP 206 (218)
Q Consensus 196 ~~~~~l~~~~~ 206 (218)
+....+..+.+
T Consensus 432 ~HvE~v~lL~r 442 (443)
T PRK13168 432 GHVESMALFER 442 (443)
T ss_pred CcEEEEEEEEe
Confidence 88888777654
No 59
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=2.6e-12 Score=104.85 Aligned_cols=140 Identities=22% Similarity=0.304 Sum_probs=98.0
Q ss_pred hHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.+..+.+.+.. ....++.+|||+|||+|.+++.++... ..+++++|+++ +++.+++|+. .....++.++.+|+...
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~ 170 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP 170 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc
Confidence 33455555543 223466799999999999999997664 46899999999 9999999987 33335689998887543
Q ss_pred CccccccCCCCcEEEEcccccCCc--------------------------chHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 115 DLSQLSELGEFDMVIMSDVFYDPE--------------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 115 ~~~~~~~~~~~D~Iv~~~~~~~~~--------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
. ..++||+|++++|+.... ....+++.+.++|+|||.+++ ... ..
T Consensus 171 ~-----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~--e~g--~~ 241 (275)
T PRK09328 171 L-----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL--EIG--YD 241 (275)
T ss_pred C-----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE--EEC--ch
Confidence 2 246899999998875321 135677888899999994333 222 23
Q ss_pred hHHHHHHHHHhCCcEEEEE
Q 046623 169 TGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~ 187 (218)
..+.+..++.+.||....+
T Consensus 242 ~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 242 QGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHHHHhCCCceeEE
Confidence 3455666668889974443
No 60
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=2.9e-13 Score=109.19 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=79.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..++..+. +++++|+++ +++.++++.. ...++.+|+..... +.++||+|++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~----~~~~fD~V~s 109 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPL----ATATFDLAWS 109 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcC----CCCcEEEEEE
Confidence 3567999999999999988887664 999999999 9998887642 24567777766543 5578999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+.++++..++..++.++.++|+|||.+++
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcCCCeEEEE
Confidence 99998888999999999999999994433
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.52 E-value=1.1e-12 Score=101.20 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=90.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++.. ..+++++|+++ +++.+++|++.++.. ++++..+|.... ..++||+|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~------~~~~~D~v~ 102 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE------LPGKADAIF 102 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh------cCcCCCEEE
Confidence 467799999999999999997654 36899999999 999999999888764 488887765321 235799999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++... ..+..+++.+.++|+|||.+++ .........+....+ .+.||....+
T Consensus 103 ~~~~~---~~~~~~l~~~~~~Lk~gG~lv~--~~~~~~~~~~~~~~l-~~~g~~~~~~ 154 (187)
T PRK08287 103 IGGSG---GNLTAIIDWSLAHLHPGGRLVL--TFILLENLHSALAHL-EKCGVSELDC 154 (187)
T ss_pred ECCCc---cCHHHHHHHHHHhcCCCeEEEE--EEecHhhHHHHHHHH-HHCCCCcceE
Confidence 86543 3467889999999999994333 222223444555554 8889865444
No 62
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.52 E-value=3.7e-13 Score=100.57 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=103.7
Q ss_pred hhHHHHHHHHhcCCC----CCC-CeEEEECCCCCHHHHHHHHhCCC-eEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 37 DSALILAQFISTHFD----FQN-KSVLELGAGAGLPGLTAARLGAT-RVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~----~~~-~~vLDlG~G~G~~~~~l~~~~~~-~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
+....+.+|+..... .+. .+|||+|||.|.+...+++.+.. ..+++|.++ +++.|+..+++++.++.+.|...
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 455577777766211 222 39999999999999999887653 599999999 99999988899999888999999
Q ss_pred ecCCCCccccccCCCCcEEE---------EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC
Q 046623 110 VWGSDDLSQLSELGEFDMVI---------MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ 180 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv---------~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~ 180 (218)
|+.+... ..+.||+|. +++.- ....+..++..+.++|+|||+++|..+.. ...|..+.. ...
T Consensus 126 DI~~~~~----~~~qfdlvlDKGT~DAisLs~d~-~~~r~~~Y~d~v~~ll~~~gifvItSCN~---T~dELv~~f-~~~ 196 (227)
T KOG1271|consen 126 DITDPDF----LSGQFDLVLDKGTLDAISLSPDG-PVGRLVVYLDSVEKLLSPGGIFVITSCNF---TKDELVEEF-ENF 196 (227)
T ss_pred eccCCcc----cccceeEEeecCceeeeecCCCC-cccceeeehhhHhhccCCCcEEEEEecCc---cHHHHHHHH-hcC
Confidence 9987643 445566665 32111 12345778899999999999666665533 445555665 888
Q ss_pred CcEEEEE
Q 046623 181 GFRVIEL 187 (218)
Q Consensus 181 gf~~~~~ 187 (218)
+|.+...
T Consensus 197 ~f~~~~t 203 (227)
T KOG1271|consen 197 NFEYLST 203 (227)
T ss_pred CeEEEEe
Confidence 8988765
No 63
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.52 E-value=1.9e-13 Score=112.42 Aligned_cols=102 Identities=22% Similarity=0.277 Sum_probs=83.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..++.+++.|. +|+++|+|+ +++.++++++.+++ ++.+...|+.... ..++||+|++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~-----~~~~fD~I~~ 190 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS-----IQEEYDFILS 190 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc-----ccCCccEEEE
Confidence 3556999999999999999998875 999999999 99999999988876 3777777765432 3568999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCCceEEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+.++++. +....+++.+.++|+|||.++++.
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8888764 467889999999999999655543
No 64
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=2e-12 Score=97.77 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=98.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++.+++|+|||+|..++.++..+ ..+++++|.++ +++..++|.++.+++ ++.++.+|.-+... ...++|.|
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~----~~~~~dai 106 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALP----DLPSPDAI 106 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhc----CCCCCCEE
Confidence 3578899999999999999998554 46999999999 999999999999964 59999887654432 23379999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCc-EEEEEEc
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF-RVIELTC 189 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf-~~~~~~~ 189 (218)
++.-. ...+.+++.+...|+|||++++=. ..-+.....++++ ++.|+ ++.++.+
T Consensus 107 FIGGg----~~i~~ile~~~~~l~~ggrlV~na--itlE~~~~a~~~~-~~~g~~ei~~v~i 161 (187)
T COG2242 107 FIGGG----GNIEEILEAAWERLKPGGRLVANA--ITLETLAKALEAL-EQLGGREIVQVQI 161 (187)
T ss_pred EECCC----CCHHHHHHHHHHHcCcCCeEEEEe--ecHHHHHHHHHHH-HHcCCceEEEEEe
Confidence 99755 567899999999999999433333 2234555666666 89999 6666533
No 65
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.51 E-value=2.6e-13 Score=104.24 Aligned_cols=105 Identities=24% Similarity=0.298 Sum_probs=82.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
...++.++||+|||.|..++.+|+.|. .|+++|.|+ +++.+.+.++..+++ ++....|+..... .+.||+|
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~-----~~~yD~I 98 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF-----PEEYDFI 98 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS------TTTEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc-----cCCcCEE
Confidence 345778999999999999999999988 899999999 999999988888876 8888888876653 4679999
Q ss_pred EEcccccC--CcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 129 IMSDVFYD--PEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 129 v~~~~~~~--~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
++.-++.+ .+...++++.+.+.++|||..++.+.
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 98555543 56778899999999999996565544
No 66
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.51 E-value=7.6e-14 Score=105.36 Aligned_cols=128 Identities=31% Similarity=0.462 Sum_probs=106.2
Q ss_pred cccccchhHHHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE
Q 046623 31 TGAWLWDSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
+..+.|.+++.+++|+...+. ..+++|||+|+|+|..++.+++.|+.+|++.|+++ ....+.-|.+.|++. +.+..
T Consensus 56 fwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~ 133 (218)
T COG3897 56 FWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTH 133 (218)
T ss_pred HHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEee
Confidence 455789999999999998666 78999999999999999999999999999999999 999999999999965 77777
Q ss_pred eecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCCh
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRT 169 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~ 169 (218)
.|... ....||++++++.+|+......++.+..++...|- .+++.++.|.+.
T Consensus 134 ~d~~g-------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~--~vlvgdp~R~~l 185 (218)
T COG3897 134 ADLIG-------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGA--AVLVGDPGRAYL 185 (218)
T ss_pred ccccC-------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCC--EEEEeCCCCCCC
Confidence 66544 34679999999999998888899996665555544 455666666653
No 67
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.51 E-value=3.7e-13 Score=100.81 Aligned_cols=95 Identities=24% Similarity=0.268 Sum_probs=74.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..++..+. +++++|+++ +++. . . ......+..... .+.++||+|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~----~-~~~~~~~~~~~~----~~~~~fD~i~ 83 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R----N-VVFDNFDAQDPP----FPDGSFDLII 83 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T----T-SEEEEEECHTHH----CHSSSEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h----h-hhhhhhhhhhhh----ccccchhhHh
Confidence 35678999999999999999988877 999999999 7776 1 1 222222212111 2668999999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
++.++++..++..+++.+.++|+|||.+++..
T Consensus 84 ~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 84 CNDVLEHLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp EESSGGGSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred hHHHHhhcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999999999999999999999444443
No 68
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=4.3e-13 Score=108.61 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=80.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..++.+|||+|||+|.++..+++. +..+++++|+++ +++.++++. .++.+..+|..... +..+||+|
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-----~~~~fD~v 97 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-----PPQALDLI 97 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-----CCCCccEE
Confidence 356789999999999999988755 346999999999 999988764 34778887775432 34689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+++.++++..+...+++.+.++|+|||.+++
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 9999999888999999999999999994444
No 69
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=6.5e-13 Score=106.99 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=82.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHH---hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR---LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~---~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+|||+|||+|..+..+++ .+..+++++|+|+ +++.+++++...+...+++++.+|+.+.. ...+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~------~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA------IENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC------CCCCCE
Confidence 3667999999999999888865 2346999999999 99999999988777667899988876543 245899
Q ss_pred EEEcccccCCc--chHHHHHHHHHHhcCCCceEE
Q 046623 128 VIMSDVFYDPE--EMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 128 Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i 159 (218)
|+++.++++.. +...+++.+.+.|+|||.+++
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99988887653 457899999999999993333
No 70
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.48 E-value=2.4e-12 Score=92.27 Aligned_cols=100 Identities=22% Similarity=0.185 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++. +..+++++|+++ +++.++++++..+.. +++++..|...... ...++||.|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE---DSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh---hhcCCCCEEE
Confidence 35679999999999999999765 446999999999 999999999887765 47787777553221 1235899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
+..+. ....++++.+.++|+|||.++
T Consensus 94 ~~~~~---~~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 94 IGGSG---GLLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred ECCcc---hhHHHHHHHHHHHcCCCCEEE
Confidence 86543 345789999999999999433
No 71
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.48 E-value=1.2e-14 Score=100.55 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=60.6
Q ss_pred EEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccccc
Q 046623 58 LELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY 135 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~ 135 (218)
||+|||+|.++..+... +..+++++|+|+ +++.+++++....... ......+..+... ....++||+|++..+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFD--YDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS-----CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhh--cccccccceehhhhhHh
Confidence 79999999999988655 445999999999 9988888887765332 3333332222211 11235999999999999
Q ss_pred CCcchHHHHHHHHHHhcCCC
Q 046623 136 DPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 136 ~~~~~~~~l~~~~~lL~~gG 155 (218)
+.+++..+++.+.++|+|||
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-
T ss_pred hhhhHHHHHHHHHHHcCCCC
Confidence 99999999999999999999
No 72
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=3.4e-12 Score=110.70 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=105.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++.. + ..+++++|+++ +++.+++|++..|+.+ +.++..|............++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEE
Confidence 46789999999999999988754 2 35899999999 9999999999998864 8888888765431000134689999
Q ss_pred EEcccccCC------cc----------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEE
Q 046623 129 IMSDVFYDP------EE----------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVI 185 (218)
Q Consensus 129 v~~~~~~~~------~~----------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~ 185 (218)
+++.|+... ++ ..++++.+.++|||||.++..+++.....-++.+..+++++ +|.+.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEec
Confidence 998776421 11 46789999999999995555555554555556666665655 57644
Q ss_pred EEE--ccCCCCCCCceeEEEecC
Q 046623 186 ELT--CQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 186 ~~~--~~~~~~~~~~~~l~~~~~ 206 (218)
... .++.......+.+-++++
T Consensus 410 ~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 410 PPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred CCCCccCCCCCCCCcEEEEEEEe
Confidence 221 233333445555555543
No 73
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=6.2e-12 Score=108.85 Aligned_cols=131 Identities=14% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++... .+|+++|+++ +++.+++|++.++.. +.++.+|...... ....++||.|+
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~--~~~~~~fD~Vl 318 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ--WWDGQPFDRIL 318 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh--hcccCCCCEEE
Confidence 4678999999999999999876643 5899999999 999999999998865 6788888764321 11346799999
Q ss_pred EcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEEE
Q 046623 130 MSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVIE 186 (218)
Q Consensus 130 ~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~~ 186 (218)
+++|+.... ...+++..+.++|+|||.+++.+++.....-++.+..+++++ +|....
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence 988765311 124789999999999995555454444444445555554443 565443
No 74
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.46 E-value=1.7e-12 Score=101.66 Aligned_cols=98 Identities=22% Similarity=0.219 Sum_probs=77.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.+++|+..++..++++++.+|..+... ...+||.|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~----~~~~fD~I 146 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE----KHAPFDAI 146 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc----cCCCccEE
Confidence 46789999999999999888754 2 35899999999 999999999988877678999988765432 34689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
+++....+ +.+.+.+.|+|||.+++
T Consensus 147 i~~~~~~~------~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 147 IVTAAAST------IPSALVRQLKDGGVLVI 171 (205)
T ss_pred EEccCcch------hhHHHHHhcCcCcEEEE
Confidence 99766533 33577889999994433
No 75
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.46 E-value=5.1e-12 Score=99.71 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=83.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..+++... .+++++|+++ +++.++++.. ...++.+..+|..+... ..++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~----~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF----EDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC----CCCcEEEE
Confidence 4678999999999999998876655 4899999999 9988888765 22457888888766543 45689999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++..+++..++..+++.+.++|+|||.+++.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 99888888889999999999999999955443
No 76
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.45 E-value=1.9e-13 Score=112.04 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=88.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+++++|||+|||+|.+++++|++|+.+|+++|.+...+.+.+.+..|++.+.++++.+.+++..+ |.+++|+|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~L----P~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIEL----PVEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEec----CccceeEEee
Confidence 478999999999999999999999999999999999669999999999999999999998887755 6789999996
Q ss_pred ---cccccCCcchHHHHHHHHHHhcCCC
Q 046623 131 ---SDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ---~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
...+.....+..++-.-.++|+|||
T Consensus 134 EWMGy~Ll~EsMldsVl~ARdkwL~~~G 161 (346)
T KOG1499|consen 134 EWMGYFLLYESMLDSVLYARDKWLKEGG 161 (346)
T ss_pred hhhhHHHHHhhhhhhhhhhhhhccCCCc
Confidence 4455555677788888889999999
No 77
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.45 E-value=2.1e-12 Score=102.87 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.++..+++.+. .+++++|+++ ++..++++.. .++.++.+|+..... +.++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~----~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL----EDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC----CCCceeEEE
Confidence 3457999999999999999887653 5789999999 8888876653 247788888776543 557899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
++.++++..+...+++.+.++|+|||.++
T Consensus 104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 104 SNLALQWCDDLSQALSELARVLKPGGLLA 132 (240)
T ss_pred EhhhhhhccCHHHHHHHHHHHcCCCcEEE
Confidence 99999998899999999999999999433
No 78
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.45 E-value=1.2e-12 Score=110.54 Aligned_cols=109 Identities=23% Similarity=0.123 Sum_probs=89.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.+|++||++.|-||.+++.++..|+++|+.+|.|. +++.+++|++.|++. .++.++.+|+.+..........+||+|+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 45899999999999999999999999999999999 999999999999985 4578998887665432222345899999
Q ss_pred EcccccCC---------cchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.||-+.. .++..++..+.++|+|||.+++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 98887643 34778999999999999933333
No 79
>PRK08317 hypothetical protein; Provisional
Probab=99.44 E-value=3.1e-12 Score=101.82 Aligned_cols=104 Identities=25% Similarity=0.188 Sum_probs=83.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++.+|||+|||+|.++..++... ..+++++|.++ +++.++++.... ..++.+...|...... ..++||+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~----~~~~~D~ 90 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF----PDGSFDA 90 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC----CCCCceE
Confidence 3567899999999999999887652 35899999999 999888873332 2458888887765443 4578999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|++..++++..+...+++.+.++|+|||.+++.
T Consensus 91 v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 91 VRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred EEEechhhccCCHHHHHHHHHHHhcCCcEEEEE
Confidence 999999999899999999999999999955443
No 80
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.44 E-value=4.4e-12 Score=101.65 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=80.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL---GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~---~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++++...+...++.++.+|+..... ..+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI------KNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC------CCCCE
Confidence 36679999999999999988764 345899999999 999999998776554568899888865532 45899
Q ss_pred EEEcccccCCc--chHHHHHHHHHHhcCCCc
Q 046623 128 VIMSDVFYDPE--EMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 128 Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG~ 156 (218)
|+++.++++.. +...+++.+.+.|+|||.
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeE
Confidence 99988887753 468899999999999993
No 81
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.43 E-value=3.7e-12 Score=100.00 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=104.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC------CeEEEecCcc-hHHHHHHHHHHhCCCCc--eEEEEeecCCCCcccccc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA------TRVVLTDVKP-LLPGLINNVEANGLGGR--VEVRELVWGSDDLSQLSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~------~~v~~~D~~~-~~~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~ 121 (218)
.++.++||++||||-++..+.+. +. .+|+.+|+|+ ++..+++..++.++..+ +.++.+|.++.+. +
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF----d 174 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF----D 174 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC----C
Confidence 45689999999999988877432 22 6899999999 99999999877766544 8999999888876 8
Q ss_pred CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 122 LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+++||...+..-+.+..++++.++++.|.|||||++.++-..+.. .+.+.++...+.|++.-+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~---~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVE---NEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccc---cHHHHHHHHhhhhhhhch
Confidence 899999999888888899999999999999999988877664432 156677756666776443
No 82
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.43 E-value=1.8e-12 Score=100.67 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=91.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
...++||||||+|.++..+++. +..+++++|+++ +++.+++++...++. ++.++.+|+.+... ...+.+.+|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~-~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLD-KFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHH-hhCCCCceeEEEE
Confidence 3459999999999999988765 446899999999 999999999888775 58999988764321 1113458999998
Q ss_pred cccccCCc--------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCC-cEEEE
Q 046623 131 SDVFYDPE--------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQG-FRVIE 186 (218)
Q Consensus 131 ~~~~~~~~--------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~g-f~~~~ 186 (218)
+.+-.+.. ....+++.+.++|+||| .+++.+.......+....+ ...+ |....
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG--~l~~~td~~~~~~~~~~~~-~~~~~f~~~~ 155 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGG--VIHFKTDNEPLFEDMLKVL-SENDLFENTS 155 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHH-HhCCCeEecc
Confidence 75432221 12679999999999999 4444444444555555555 5544 66543
No 83
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.43 E-value=1.2e-11 Score=103.09 Aligned_cols=141 Identities=15% Similarity=0.132 Sum_probs=102.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.++..+ .+|+++|.++ +++.+++|++.+++ .+++++.+|+.+.... ..+.||+|++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~---~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATA---QGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHh---cCCCCeEEEE
Confidence 356899999999999999999876 4999999999 99999999999988 4589999887653211 2346999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCCCCceeEEEecC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~~~~~~l~~~~~ 206 (218)
++|.. .....+++.+.+ ++|++ +++++... ......+..+ .||.+.++ |+.+.|.......+..+.+
T Consensus 247 dPPr~--G~~~~~~~~l~~-~~~~~--ivyvsc~p-~t~~rd~~~l---~~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 247 NPPRR--GIGKELCDYLSQ-MAPRF--ILYSSCNA-QTMAKDLAHL---PGYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred CCCCC--CccHHHHHHHHH-cCCCe--EEEEECCc-ccchhHHhhc---cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 87732 333445455443 56665 55544342 2333444544 58999988 8988888888777766653
No 84
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.43 E-value=1.3e-13 Score=105.74 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=92.3
Q ss_pred ccccchhHHHHHHHHhc--CCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEE
Q 046623 32 GAWLWDSALILAQFIST--HFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVR 107 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~--~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~ 107 (218)
+..+.+++..+.+.+.+ .+. .++.++||+.||+|.+++++...|+.+|+.+|.++ ++..+++|++..+..+.+.++
T Consensus 18 ~~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~ 97 (183)
T PF03602_consen 18 GDNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI 97 (183)
T ss_dssp --TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE
T ss_pred CCCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeee
Confidence 34455677777777666 223 68999999999999999999999999999999999 999999999999887778888
Q ss_pred EeecCCCCccccccCCCCcEEEEcccccCCcc-hHHHHHHHH--HHhcCCCceEEEEEeecc
Q 046623 108 ELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE-MVGLGKTLK--RVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 108 ~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~-~~~~l~~~~--~lL~~gG~~~i~~~~~~~ 166 (218)
..|.............+||+|++.||+.. .. ..++++.+. .+|+++| ++++....+
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~--~ii~E~~~~ 156 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDG--LIIIEHSKK 156 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEE--EEEEEEETT
T ss_pred ccCHHHHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCE--EEEEEecCC
Confidence 87754333221124578999999666544 44 488888887 6889988 555554433
No 85
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.43 E-value=3.3e-12 Score=98.69 Aligned_cols=125 Identities=15% Similarity=0.077 Sum_probs=88.9
Q ss_pred ccchhHHHHHHHHhc--CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 34 WLWDSALILAQFIST--HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~--~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
...++...+.+.+.+ ....++.+|||++||+|.+++.++..|+.+|+++|.++ +++.+++|++.++...+++++..|
T Consensus 28 ~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D 107 (189)
T TIGR00095 28 STRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNS 107 (189)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehh
Confidence 344555555555444 12356889999999999999999998888999999999 999999999999887678889888
Q ss_pred cCCCCccccccCC-CCcEEEEcccccCCcchHHHHHHHHH--HhcCCCceEEEEE
Q 046623 111 WGSDDLSQLSELG-EFDMVIMSDVFYDPEEMVGLGKTLKR--VCGTGRHTVVWAV 162 (218)
Q Consensus 111 ~~~~~~~~~~~~~-~~D~Iv~~~~~~~~~~~~~~l~~~~~--lL~~gG~~~i~~~ 162 (218)
..+... ...... .+|+|+..||+ ......++++.+.+ +++++| ++++.
T Consensus 108 ~~~~l~-~~~~~~~~~dvv~~DPPy-~~~~~~~~l~~l~~~~~l~~~~--iiv~E 158 (189)
T TIGR00095 108 ALRALK-FLAKKPTFDNVIYLDPPF-FNGALQALLELCENNWILEDTV--LIVVE 158 (189)
T ss_pred HHHHHH-HhhccCCCceEEEECcCC-CCCcHHHHHHHHHHCCCCCCCe--EEEEE
Confidence 744321 111122 46777775554 44566777776654 677777 45544
No 86
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=3.3e-12 Score=99.22 Aligned_cols=122 Identities=17% Similarity=0.073 Sum_probs=86.9
Q ss_pred chhHHHHHHHHhc-C-CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 36 WDSALILAQFIST-H-FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 36 w~~~~~l~~~l~~-~-~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
.++...+.+.+.+ . ...++.+|||+|||+|.+++.++..++.+|+++|.++ +++.+++|++.+++. ++.++.+|+.
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~ 112 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNAL 112 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHH
Confidence 4555555443333 1 1245679999999999999976555667999999999 999999999999875 5888888875
Q ss_pred CCCccccccCCCCcEEEEcccccCCcchHHHHHHHHH--HhcCCCceEEEEEee
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKR--VCGTGRHTVVWAVSE 164 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~--lL~~gG~~~i~~~~~ 164 (218)
.... . ...+||+|++++|+. ......+++.+.+ +++|++ ++++...
T Consensus 113 ~~l~-~--~~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~--iv~ve~~ 160 (199)
T PRK10909 113 SFLA-Q--PGTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEA--LIYVESE 160 (199)
T ss_pred HHHh-h--cCCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCc--EEEEEec
Confidence 4321 1 234699999988854 3556667677765 378888 5555543
No 87
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=6.8e-12 Score=98.94 Aligned_cols=123 Identities=22% Similarity=0.252 Sum_probs=100.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-hCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-LGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|+|.|.|||.++..++. .+. .+|+..|+.+ .++.|++|++..++.+++.+...|..+... .+.||.|
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-----~~~vDav 167 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-----EEDVDAV 167 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-----ccccCEE
Confidence 5789999999999999999984 343 6999999999 999999999999998889999888876653 3489999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++ +.+++...++.+.++|+|||.+++++. .-.+.......+ ++.||.-.+.
T Consensus 168 ~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P--~veQv~kt~~~l-~~~g~~~ie~ 218 (256)
T COG2519 168 FL-----DLPDPWNVLEHVSDALKPGGVVVVYSP--TVEQVEKTVEAL-RERGFVDIEA 218 (256)
T ss_pred EE-----cCCChHHHHHHHHHHhCCCcEEEEEcC--CHHHHHHHHHHH-HhcCccchhh
Confidence 98 346788999999999999995555544 336677777777 8888875554
No 88
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.43 E-value=1.4e-11 Score=107.18 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=94.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..++.+++. +..+++++|+++ +++.+++|++.+++.+ +.++.+|...... . ..++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~-~--~~~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHE-K--FAEKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccc-h--hcccCCEE
Confidence 46779999999999999998754 346999999999 9999999999998865 8888888765421 0 12679999
Q ss_pred EEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEE
Q 046623 129 IMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVI 185 (218)
Q Consensus 129 v~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~ 185 (218)
++++|+.... ....+++.+.++|+|||.++..+++......+..+..+++++ .|...
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~ 404 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELV 404 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEe
Confidence 9988764321 124688999999999995443333333333444556554554 47765
Q ss_pred EE
Q 046623 186 EL 187 (218)
Q Consensus 186 ~~ 187 (218)
.+
T Consensus 405 ~~ 406 (444)
T PRK14902 405 PL 406 (444)
T ss_pred cc
Confidence 54
No 89
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.43 E-value=7.9e-12 Score=98.30 Aligned_cols=145 Identities=13% Similarity=0.043 Sum_probs=96.3
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC-----------CCCceE
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG-----------LGGRVE 105 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~-----------~~~~~~ 105 (218)
-...+.+++......++.+|||+|||.|..++.+|..|. +|+++|+|+ +++.+.+...... -..+++
T Consensus 19 p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 19 VNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 445666676553223567999999999999999999887 899999999 9997533211000 013478
Q ss_pred EEEeecCCCCccccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEeec--------cCChHHHHHH
Q 046623 106 VRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEV--------RTRTGDCLHE 175 (218)
Q Consensus 106 ~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~--------~~~~~~~~~~ 175 (218)
+..+|+.+.... ..+.||.|+-..++.+. +....+++.+.++|+|||.+++++.... .....+.+..
T Consensus 98 ~~~~D~~~~~~~---~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 98 IFCGDFFALTAA---DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEA 174 (213)
T ss_pred EEEccCCCCCcc---cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHH
Confidence 888888765431 23579999976655443 4567799999999999996555543321 1123344555
Q ss_pred HHHhCCcEEEEE
Q 046623 176 LIMSQGFRVIEL 187 (218)
Q Consensus 176 ~~~~~gf~~~~~ 187 (218)
++ ..+|.+..+
T Consensus 175 ~f-~~~~~i~~~ 185 (213)
T TIGR03840 175 LY-GGHYEIELL 185 (213)
T ss_pred Hh-cCCceEEEE
Confidence 52 346776665
No 90
>PLN02672 methionine S-methyltransferase
Probab=99.42 E-value=6.3e-12 Score=117.56 Aligned_cols=173 Identities=21% Similarity=0.175 Sum_probs=114.3
Q ss_pred EEEeccCcCCCCccccccccccchhHHHHHHHHhcCCC--CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHH
Q 046623 14 IIQELDNVCDSVTGRPLTGAWLWDSALILAQFISTHFD--FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLP 89 (218)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~--~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~ 89 (218)
++...++|+-|. +.+..+.+.+...+. +++.+|||+|||+|.+++.+++. +..+++++|+|+ +++
T Consensus 88 ~~~V~p~VLIPR-----------peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~ 156 (1082)
T PLN02672 88 TMMEIPSIFIPE-----------DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVK 156 (1082)
T ss_pred ceeeCCCcccCc-----------hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 344445677766 444455555433222 34679999999999999999765 346999999999 999
Q ss_pred HHHHHHHHhCCC---------------CceEEEEeecCCCCccccccCCCCcEEEEcccccCCcc---------------
Q 046623 90 GLINNVEANGLG---------------GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEE--------------- 139 (218)
Q Consensus 90 ~a~~~~~~~~~~---------------~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~--------------- 139 (218)
.|+.|+..|++. ++++++.+|+.+.... ...+||+|++|+|+-...+
T Consensus 157 ~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~---~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~ 233 (1082)
T PLN02672 157 VAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD---NNIELDRIVGCIPQILNPNPEAMSKLVTENASEE 233 (1082)
T ss_pred HHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc---cCCceEEEEECCCcCCCcchhhcChhhhhccccc
Confidence 999999987542 4689999998754310 1236999999988632110
Q ss_pred -----------------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHH-HHHHhCCcEEEEE--EccCCC
Q 046623 140 -----------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLH-ELIMSQGFRVIEL--TCQLGG 193 (218)
Q Consensus 140 -----------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~-~~~~~~gf~~~~~--~~~~~~ 193 (218)
+..++..+.++|+||| .+++... ....+.+. .+++..||....+ ..-.+.
T Consensus 234 ~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG--~l~lEiG--~~q~~~v~~~l~~~~gf~~~~~~~~~~~~~ 309 (1082)
T PLN02672 234 FLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG--IMIFNMG--GRPGQAVCERLFERRGFRITKLWQTKINQA 309 (1082)
T ss_pred cccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC--EEEEEEC--ccHHHHHHHHHHHHCCCCeeEEeeehhhhc
Confidence 2567778888999999 4444333 34445555 4668889988665 222333
Q ss_pred CCCCceeEEEe
Q 046623 194 GCPEAFAVYEL 204 (218)
Q Consensus 194 ~~~~~~~l~~~ 204 (218)
....+..|.++
T Consensus 310 ~~~~~~~~~~~ 320 (1082)
T PLN02672 310 ADTDISALVEI 320 (1082)
T ss_pred cccchHHHHHH
Confidence 34444444444
No 91
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.42 E-value=2.9e-13 Score=94.07 Aligned_cols=93 Identities=26% Similarity=0.343 Sum_probs=73.6
Q ss_pred EEEECCCCCHHHHHHHHhC----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 57 VLELGAGAGLPGLTAARLG----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 57 vLDlG~G~G~~~~~l~~~~----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
|||+|||+|.....+.... ..+++++|+++ +++.++++....+. .++++..|+.+... ..++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~----~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF----SDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH----HSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc----cCCCeeEEEEc
Confidence 7999999999999987652 26999999999 99999999988665 48999999876433 56799999994
Q ss_pred -ccccCC--cchHHHHHHHHHHhcCCC
Q 046623 132 -DVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 132 -~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
.++++. ++...+++.+.++++|||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 435553 468899999999999987
No 92
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.42 E-value=1.2e-11 Score=98.67 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=83.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...+. .+++...++.+... ...++||+|+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~fD~Ii 119 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA---EHPGQFDVVT 119 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh---hcCCCccEEE
Confidence 35678999999999999998887765 899999999 99999988877664 36677666544321 1346899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
++.++++..+...+++.+.++|+|||.++
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 120 CMEMLEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred EhhHhhccCCHHHHHHHHHHHcCCCcEEE
Confidence 99999988899999999999999999443
No 93
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.42 E-value=1.7e-11 Score=104.38 Aligned_cols=140 Identities=12% Similarity=0.126 Sum_probs=104.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.+++.++..+ .+|+++|+++ +++.+++|++.+++. +++++.+|+.+.... ...+||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~---~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATA---QMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHh---cCCCCCEEEE
Confidence 356799999999999999998765 5899999999 999999999999885 589998887543211 1245999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCCCCceeEEEec
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGCPEAFAVYELI 205 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~~~~~~l~~~~ 205 (218)
++|.. .....+++.+.+ ++|++ +++++... ......+..+ .||.+..+ |+.+.|.......+..+.
T Consensus 307 DPPr~--G~~~~~l~~l~~-~~p~~--ivyvsc~p-~TlaRDl~~L---~gy~l~~~~~~DmFPqT~HvE~v~ll~ 373 (374)
T TIGR02085 307 NPPRR--GIGKELCDYLSQ-MAPKF--ILYSSCNA-QTMAKDIAEL---SGYQIERVQLFDMFPHTSHYEVLTLLV 373 (374)
T ss_pred CCCCC--CCcHHHHHHHHh-cCCCe--EEEEEeCH-HHHHHHHHHh---cCceEEEEEEeccCCCCCcEEEEEEEe
Confidence 87742 445667777764 68877 55554332 2344444544 68999998 899998888877776664
No 94
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.42 E-value=5.6e-12 Score=99.48 Aligned_cols=99 Identities=20% Similarity=0.110 Sum_probs=77.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++.+|||+|||+|..+..+++... .+|+++|+++ +++.+++++...++. +++++.+|...... ...+||+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~----~~~~fD~ 149 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE----PLAPYDR 149 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc----ccCCCCE
Confidence 35778999999999999999886633 3699999999 999999999998874 58899888765432 3468999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|++..+.. .+.+.+.+.|+|||.+++.
T Consensus 150 Ii~~~~~~------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 150 IYVTAAGP------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EEEcCCcc------cccHHHHHhcCcCcEEEEE
Confidence 99875543 3445678899999954443
No 95
>PLN03075 nicotianamine synthase; Provisional
Probab=99.41 E-value=4.6e-12 Score=103.31 Aligned_cols=129 Identities=18% Similarity=0.135 Sum_probs=91.3
Q ss_pred CCCeEEEECCCCCHH-HHHHH-Hh-CCCeEEEecCcc-hHHHHHHHHHH-hCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLP-GLTAA-RL-GATRVVLTDVKP-LLPGLINNVEA-NGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~-~~~l~-~~-~~~~v~~~D~~~-~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
++++|+|+|||.|.+ ++.++ .. +..+++++|+++ +.+.|+++++. .++.++++|..+|..+... ..+.||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE----SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc----ccCCcCE
Confidence 678999999998854 33333 33 446899999999 99999999964 7787889999998876432 3468999
Q ss_pred EEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|++. .+++. ++..++++.+.+.|+|||.+++=.+...|......+... .-.||++..+
T Consensus 199 VF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~-~~~gf~~~~~ 258 (296)
T PLN03075 199 VFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPC-DLRGFEVLSV 258 (296)
T ss_pred EEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChh-hCCCeEEEEE
Confidence 9998 66554 789999999999999999333322222222222222222 2348888776
No 96
>PRK04266 fibrillarin; Provisional
Probab=99.41 E-value=7.3e-11 Score=93.60 Aligned_cols=131 Identities=14% Similarity=0.107 Sum_probs=87.0
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
...++.+|||+|||+|..+..+++. +..+|+++|+++ +++.+.++++.. .++.++.+|...... .....++||+
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~-~~~l~~~~D~ 144 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPER-YAHVVEKVDV 144 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcch-hhhccccCCE
Confidence 3357789999999999999999765 335899999999 998887776543 347888888654210 0112356999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEe---ecc----CChHHHHHHHHHhCCcEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS---EVR----TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~---~~~----~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|++..+ .......+++.+.+.|||||.+++.+.. ..+ ....+....+ ++.||.....
T Consensus 145 i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l-~~aGF~~i~~ 208 (226)
T PRK04266 145 IYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKL-EEGGFEILEV 208 (226)
T ss_pred EEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHH-HHcCCeEEEE
Confidence 996422 1112345689999999999955552211 101 1122344444 8999999887
No 97
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.41 E-value=1.9e-11 Score=96.89 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=106.6
Q ss_pred eEEEEEeccCcCCCCccccccccccchhHHHHHHHHhc---CCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc
Q 046623 11 NSIIIQELDNVCDSVTGRPLTGAWLWDSALILAQFIST---HFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP 86 (218)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~l~~~l~~---~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~ 86 (218)
+++++.--++|+=|.++. ...+...+.. ....++..+||+|||+|..++.++ ..+...++++|.++
T Consensus 113 ~~l~l~~~pgVlIPRpET----------EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~ 182 (328)
T KOG2904|consen 113 GDLDLVCKPGVLIPRPET----------EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK 182 (328)
T ss_pred CCceEEecCCeeecCccH----------HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccH
Confidence 456777777888877533 3333333322 112456689999999999999885 44567899999999
Q ss_pred -hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcEEEEcccccCCcc-------------------------
Q 046623 87 -LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDMVIMSDVFYDPEE------------------------- 139 (218)
Q Consensus 87 -~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~~~~~~~~~------------------------- 139 (218)
|+..|.+|+..+++.+++.++..+++....... ...+++|++++|+|+-..++
T Consensus 183 ~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~ 262 (328)
T KOG2904|consen 183 AAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYD 262 (328)
T ss_pred HHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhH
Confidence 999999999999999999999776655543322 24578999999998754322
Q ss_pred -hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 140 -MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 140 -~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
..-++..+.+.|+||| +++.....+..-......+
T Consensus 263 ~~~~~~~~a~R~Lq~gg--~~~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 263 NLVHYWLLATRMLQPGG--FEQLELVERKEHSYLVRIW 298 (328)
T ss_pred HHHHHHHhhHhhcccCC--eEEEEecccccCcHHHHHH
Confidence 3345666788999999 5554444333333444444
No 98
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.41 E-value=1.2e-11 Score=97.81 Aligned_cols=96 Identities=27% Similarity=0.334 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..++..+. +++++|+++ ++..++++....+...++.+...|+... + ++||+|++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~-~~fD~ii~ 125 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL------C-GEFDIVVC 125 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC------C-CCcCEEEE
Confidence 4678999999999999999987765 899999999 9999999988776655688888776543 2 67999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCCC
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
..++++. .....++..+.+++++++
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~ 152 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERV 152 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCE
Confidence 8887653 346778888888887654
No 99
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.40 E-value=3e-11 Score=91.84 Aligned_cols=139 Identities=22% Similarity=0.191 Sum_probs=101.0
Q ss_pred CCCCccccccccccchhHHHHHHHHhc--CC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHH
Q 046623 22 CDSVTGRPLTGAWLWDSALILAQFIST--HF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEA 97 (218)
Q Consensus 22 ~~~~~~~~~~g~~~w~~~~~l~~~l~~--~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~ 97 (218)
|-.....-..|-.+.+++..+.+-+.+ .+ ...+.++||+.+|||.+++.+...|+.+++.+|.+. ++..+++|++.
T Consensus 9 ~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 9 YKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred ccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 333333334455566788888888877 44 478999999999999999999999999999999999 99999999999
Q ss_pred hCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHH----HHHhcCCCceEEEEEee
Q 046623 98 NGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTL----KRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 98 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~----~~lL~~gG~~~i~~~~~ 164 (218)
.+...+..++..|.... ..+....+.||+|++.||+. .......+..+ ..+|+|+| ++++...
T Consensus 89 l~~~~~~~~~~~da~~~-L~~~~~~~~FDlVflDPPy~-~~l~~~~~~~~~~~~~~~L~~~~--~iv~E~~ 155 (187)
T COG0742 89 LGLEGEARVLRNDALRA-LKQLGTREPFDLVFLDPPYA-KGLLDKELALLLLEENGWLKPGA--LIVVEHD 155 (187)
T ss_pred hCCccceEEEeecHHHH-HHhcCCCCcccEEEeCCCCc-cchhhHHHHHHHHHhcCCcCCCc--EEEEEeC
Confidence 98777788888776622 11221233599999977765 33332222222 36799999 6666544
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.40 E-value=3.2e-11 Score=94.73 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=91.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-C-CeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c---cccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-A-TRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q---LSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~-~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~---~~~~~~~ 125 (218)
.++.+|||+|||+|.++..+++.. . .+|+++|++++. .. ..++++.+|+.+.... . ....++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PI-VGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CC-CCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 467799999999999999887653 2 589999998721 12 2388999998775310 0 1145789
Q ss_pred cEEEEcccccCCcc-----------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE--EccCC
Q 046623 126 DMVIMSDVFYDPEE-----------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL--TCQLG 192 (218)
Q Consensus 126 D~Iv~~~~~~~~~~-----------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~--~~~~~ 192 (218)
|+|+++...+.... ...+++.+.++|+|||.+++... ......+++..+ ...|.-.++ |...+
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~--~~~~~~~~l~~l--~~~f~~v~~~Kp~ssr 194 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF--QGEGFDEYLREI--RSLFTKVKVRKPDSSR 194 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe--cCcCHHHHHHHH--HhCceEEEEECCcccc
Confidence 99999654433211 25688999999999995544333 234556666665 567777776 55555
Q ss_pred CCCCCceeEE
Q 046623 193 GGCPEAFAVY 202 (218)
Q Consensus 193 ~~~~~~~~l~ 202 (218)
....+.+.+.
T Consensus 195 ~~s~e~~~~~ 204 (209)
T PRK11188 195 ARSREVYIVA 204 (209)
T ss_pred ccCceeEEEe
Confidence 5566655553
No 101
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.40 E-value=1.8e-11 Score=101.57 Aligned_cols=103 Identities=14% Similarity=0.178 Sum_probs=84.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..++.+++. +..+++++|.+++++.++++++..+..++++++.+|+.+... +.+|+|++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~------~~~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESY------PEADAVLF 221 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCC------CCCCEEEe
Confidence 45679999999999999998765 446899999844999999999999888889999999875432 24799998
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..++|+..+ ...+++++.+.|+|||++++.
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 888886543 468999999999999966555
No 102
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.40 E-value=9.6e-12 Score=98.53 Aligned_cols=102 Identities=21% Similarity=0.188 Sum_probs=83.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +++++|.++ +++.++.++...+.. ++.+...|+.+.... ..++||+|++
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~---~~~~~D~i~~ 118 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK---GAKSFDVVTC 118 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC---CCCCccEEEe
Confidence 4577999999999999998887765 799999999 999999988876642 367777665543321 2368999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
+..+++..++..+++.+.++|++||.++
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~ 146 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPGGILF 146 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCCcEEE
Confidence 9999999999999999999999999443
No 103
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.40 E-value=1e-11 Score=97.76 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=82.2
Q ss_pred hHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 38 SALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 38 ~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
++..+...+.+ ....++.+|||+|||+|..+..+++. +. .+|+++|+++ +++.++++++..+.. ++.++.+|...
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~ 138 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTL 138 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCccc
Confidence 33444444443 33357889999999999999888765 32 5899999999 999999999988764 58999988764
Q ss_pred CCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
... ...+||+|++..... .+.+.+.+.|+|||.+++.
T Consensus 139 ~~~----~~~~fD~I~~~~~~~------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 139 GYE----ENAPYDRIYVTAAGP------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCC----cCCCcCEEEECCCcc------cchHHHHHhhCCCcEEEEE
Confidence 432 457899999865432 3345677899999955444
No 104
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.39 E-value=1.1e-11 Score=100.73 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=96.2
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
.+.+..+..++.. ..++.+|||+|||+|..+..++.. + ..+|+++|+++ +++.+++|++.+++. ++.+...|..
T Consensus 56 qd~~s~~~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~ 132 (264)
T TIGR00446 56 QEASSMIPPLALE--PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGR 132 (264)
T ss_pred ECHHHHHHHHHhC--CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHH
Confidence 4444444444333 246789999999999999988654 2 24899999999 999999999999875 3788877754
Q ss_pred CCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChH
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG 170 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~ 170 (218)
.... ..+.||.|++++|+.... ...++++.+.++|+|||.++..+++.....-+
T Consensus 133 ~~~~----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene 208 (264)
T TIGR00446 133 VFGA----AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENE 208 (264)
T ss_pred Hhhh----hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHH
Confidence 4322 335699999988875421 23468899999999999544434443333345
Q ss_pred HHHHHHHHhC
Q 046623 171 DCLHELIMSQ 180 (218)
Q Consensus 171 ~~~~~~~~~~ 180 (218)
+.++.+++.+
T Consensus 209 ~vv~~~l~~~ 218 (264)
T TIGR00446 209 AVVDYLLEKR 218 (264)
T ss_pred HHHHHHHHhC
Confidence 5666665543
No 105
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.38 E-value=2.9e-12 Score=98.37 Aligned_cols=107 Identities=16% Similarity=0.090 Sum_probs=86.5
Q ss_pred HHhcCCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccC
Q 046623 45 FISTHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 45 ~l~~~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
++.+.+.....+|.|||||+|..+..++ +.+...++|+|.|+ +++.|++.. .++.|..+|+..-. +.
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-----p~ 90 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-----PE 90 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-----CC
Confidence 3334444566799999999999988886 55667999999999 999987664 45888888765543 67
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
...|++++|.+++..++...++..+...|+|||.+.+-..
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 8899999999999999999999999999999994444433
No 106
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.38 E-value=1.9e-11 Score=97.16 Aligned_cols=95 Identities=27% Similarity=0.417 Sum_probs=75.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...+...++.+..+|+.. ..++||+|+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~fD~v~ 132 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-------LLGRFDTVV 132 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-------ccCCcCEEE
Confidence 35677999999999999999988766 799999999 999999998887765568888877432 346799999
Q ss_pred EcccccCC--cchHHHHHHHHHHhcC
Q 046623 130 MSDVFYDP--EEMVGLGKTLKRVCGT 153 (218)
Q Consensus 130 ~~~~~~~~--~~~~~~l~~~~~lL~~ 153 (218)
+..++++. +....+++.+.+++++
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCC
Confidence 99888653 4566777888776643
No 107
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.38 E-value=5e-11 Score=92.71 Aligned_cols=144 Identities=18% Similarity=0.133 Sum_probs=93.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|.+++.+++. +..+++++|+++ +++.+++|++.++.. +++++.+|..+... . ....+|.++
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~-~--~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLA-Q--LAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHh-h--CCCCCCEEE
Confidence 46789999999999999998754 346999999999 999999999988874 48888877643211 0 123467776
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChH---HHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG---DCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~---~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~ 206 (218)
+.. ......+++.+.++|+|||.+++.... ..... +.+..+ ...++.+.++..... ........|....
T Consensus 115 ~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (196)
T PRK07402 115 IEG----GRPIKEILQAVWQYLKPGGRLVATASS--LEGLYAISEGLAQL-QARNIEVVQAAVNRL-ETRGFSQVFAAVD 186 (196)
T ss_pred EEC----CcCHHHHHHHHHHhcCCCeEEEEEeec--HHHHHHHHHHHHhc-CCCCceEEEEEhhhc-ccccCcCeeecCC
Confidence 532 245688999999999999954444332 22222 222222 345666666543221 1122344455555
Q ss_pred C
Q 046623 207 P 207 (218)
Q Consensus 207 ~ 207 (218)
|
T Consensus 187 p 187 (196)
T PRK07402 187 P 187 (196)
T ss_pred C
Confidence 5
No 108
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.38 E-value=4.7e-11 Score=103.39 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=96.7
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
++..+..++.- .++.+|||+|||+|..+..+++. +..+++++|+++ +++.+++|++..++...+.+..+|.....
T Consensus 226 ~s~~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 226 SAQWVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred HHHHHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 44455544432 46789999999999999998754 445999999999 99999999999887632333544433221
Q ss_pred ccccccCCCCcEEEEcccccCCc------c----------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHH
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPE------E----------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCL 173 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~------~----------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~ 173 (218)
. .....+||.|+++.|+.... + ..+++..+.++|+|||.+++.+++.....-+..+
T Consensus 303 ~--~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v 380 (426)
T TIGR00563 303 Q--WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQI 380 (426)
T ss_pred c--cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHH
Confidence 1 11346799999977764321 1 3679999999999999555555555444555556
Q ss_pred HHHHHhC-CcEE
Q 046623 174 HELIMSQ-GFRV 184 (218)
Q Consensus 174 ~~~~~~~-gf~~ 184 (218)
..++.++ +|.+
T Consensus 381 ~~~l~~~~~~~~ 392 (426)
T TIGR00563 381 KAFLQEHPDFPF 392 (426)
T ss_pred HHHHHhCCCCee
Confidence 6665554 4543
No 109
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.37 E-value=9.8e-13 Score=107.11 Aligned_cols=104 Identities=24% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-CceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-GRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++++|||+.|-+|.+++.+++.|+.+|+.+|.|. +++.+++|++.|++. ..++++..|+.+... .....++||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~-~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK-RLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH-HHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-HHhcCCCCCEEE
Confidence 46789999999999999999999988999999999 999999999999986 568899888765432 222456899999
Q ss_pred EcccccCC------cchHHHHHHHHHHhcCCCc
Q 046623 130 MSDVFYDP------EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 130 ~~~~~~~~------~~~~~~l~~~~~lL~~gG~ 156 (218)
+.||-+.. .++..++..+.++|+|||.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 98886542 3467788999999999993
No 110
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.37 E-value=2.5e-11 Score=100.55 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=101.2
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHh-CCCCceEEEEe-ecCCCCcccc-ccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEAN-GLGGRVEVREL-VWGSDDLSQL-SELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~~~-d~~~~~~~~~-~~~~~~D~ 127 (218)
++.++||||||+|.+...++ +....+++++|+++ +++.|+.|++.| ++..++.+... |.... .... .+.+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i-~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI-FKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh-hhcccccCCceEE
Confidence 45799999999997777664 44446999999999 999999999999 78877877542 22111 1111 13568999
Q ss_pred EEEcccccCCcch-----HHHHHH----------------HHHHhcCCCceEEE------------------EEeeccCC
Q 046623 128 VIMSDVFYDPEEM-----VGLGKT----------------LKRVCGTGRHTVVW------------------AVSEVRTR 168 (218)
Q Consensus 128 Iv~~~~~~~~~~~-----~~~l~~----------------~~~lL~~gG~~~i~------------------~~~~~~~~ 168 (218)
|++|+|||....- ..-.+. ..+++.+||.+.++ +.-.....
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~ 272 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKEN 272 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCC
Confidence 9999999864221 111111 22445566643333 11122345
Q ss_pred hHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecCCccccccc
Q 046623 169 TGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIPPMHEENFH 214 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 214 (218)
+....+.+ ++.|...+.+....+..+..+.+-|.|.....+..|.
T Consensus 273 l~~l~~~L-~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~~~~~~ 317 (321)
T PRK11727 273 LPPLYRAL-KKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQRRRWV 317 (321)
T ss_pred HHHHHHHH-HHcCCceEEEEEEeCCCeeeEEEEeecCCHHHhHHHH
Confidence 66666666 8888866666444454555566669987765554443
No 111
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.37 E-value=2.1e-11 Score=95.91 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=80.1
Q ss_pred HHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 41 ILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 41 ~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
.+..++.. ....++.+|||+|||+|..+..+++... +++++|+++ +++.++++++..++.+ +++..+|......
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-- 140 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWP-- 140 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCC--
Confidence 33334333 3335678999999999999988877654 899999999 9999999999887754 8888888654322
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
..++||+|++...+. .+.+.+.+.|+|||.+++.
T Consensus 141 --~~~~fD~I~~~~~~~------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 141 --AYAPFDRILVTAAAP------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred --cCCCcCEEEEccCch------hhhHHHHHhcCCCcEEEEE
Confidence 347899999976543 3456678899999944443
No 112
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.37 E-value=2.1e-11 Score=92.98 Aligned_cols=144 Identities=19% Similarity=0.237 Sum_probs=91.6
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
-.++||+|||.|.++..++... .+++++|+++ +++.++++.... .++++...|+.+.. +.++||+|+++.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~-----P~~~FDLIV~SE 114 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFW-----PEGRFDLIVLSE 114 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT--------SS-EEEEEEES
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCC-----CCCCeeEEEEeh
Confidence 3589999999999999998774 5999999999 999999988654 45999998875543 778999999999
Q ss_pred cccCCc---chHHHHHHHHHHhcCCCceEEEEEeec-------cCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEE
Q 046623 133 VFYDPE---EMVGLGKTLKRVCGTGRHTVVWAVSEV-------RTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVY 202 (218)
Q Consensus 133 ~~~~~~---~~~~~l~~~~~lL~~gG~~~i~~~~~~-------~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~ 202 (218)
++|+.. ++..+++.+...|+|||.+++-..... ....+. +..++.+.=-++.++.+.-. ...+--.|-
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~t-v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 192 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAET-VLEMLQEHLTEVERVECRGG-SPNEDCLLA 192 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHH-HHHHHHHHSEEEEEEEEE-S-STTSEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHH-HHHHHHHHhhheeEEEEcCC-CCCCceEee
Confidence 999875 466788999999999993333222110 011333 33333554455555554433 333445667
Q ss_pred EecCCc
Q 046623 203 ELIPPM 208 (218)
Q Consensus 203 ~~~~~~ 208 (218)
+|.+|+
T Consensus 193 ~~~~~~ 198 (201)
T PF05401_consen 193 RFRNPV 198 (201)
T ss_dssp EEE--S
T ss_pred eecCCc
Confidence 777774
No 113
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.36 E-value=7.8e-11 Score=93.01 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=95.5
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC--------------CC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL--------------GG 102 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~--------------~~ 102 (218)
-...|.+++......++.+|||+|||.|..++.++..|. +|+++|+++ +++.+.. ++++ ..
T Consensus 22 p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 22 VNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccC
Confidence 445566666542234567999999999999999999887 899999999 9987642 2222 24
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccC--CcchHHHHHHHHHHhcCCCceEEEEEee--cc------CChHHH
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLKRVCGTGRHTVVWAVSE--VR------TRTGDC 172 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG~~~i~~~~~--~~------~~~~~~ 172 (218)
++++..+|+.+.... ..+.||.|+-..++.+ .+....+++.+.++|+|||..++++... .. ....+.
T Consensus 98 ~v~~~~~D~~~l~~~---~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~e 174 (218)
T PRK13255 98 EITIYCGDFFALTAA---DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEE 174 (218)
T ss_pred ceEEEECcccCCCcc---cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHH
Confidence 578888888765431 2357999997665544 3557889999999999999544432211 11 123445
Q ss_pred HHHHHHhCCcEEEEE
Q 046623 173 LHELIMSQGFRVIEL 187 (218)
Q Consensus 173 ~~~~~~~~gf~~~~~ 187 (218)
+..++ ..+|.+..+
T Consensus 175 l~~~~-~~~~~i~~~ 188 (218)
T PRK13255 175 VEALY-AGCFEIELL 188 (218)
T ss_pred HHHHh-cCCceEEEe
Confidence 55552 344777766
No 114
>PHA03411 putative methyltransferase; Provisional
Probab=99.35 E-value=2.9e-11 Score=97.37 Aligned_cols=122 Identities=13% Similarity=0.003 Sum_probs=85.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
...+|||+|||+|.+++.+++. +..+++++|+++ +++.++++. .++.++..|+.... ...+||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-----~~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-----SNEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-----ccCCCcEEEE
Confidence 4569999999999999888654 345999999999 999988764 24778888876543 3468999999
Q ss_pred cccccCCcc--------------------hHHHHHHHHHHhcCCCceEEEEEee-c--cCChHHHHHHHHHhCCcEEE
Q 046623 131 SDVFYDPEE--------------------MVGLGKTLKRVCGTGRHTVVWAVSE-V--RTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 131 ~~~~~~~~~--------------------~~~~l~~~~~lL~~gG~~~i~~~~~-~--~~~~~~~~~~~~~~~gf~~~ 185 (218)
++|+++... ..+++.....+|+|+|...+..... . ..........++++.||...
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEec
Confidence 999976311 2567777788999999333332221 1 12233444445599999864
No 115
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=4.2e-11 Score=104.24 Aligned_cols=150 Identities=16% Similarity=0.073 Sum_probs=103.6
Q ss_pred ccccc-ccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCce
Q 046623 29 PLTGA-WLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRV 104 (218)
Q Consensus 29 ~~~g~-~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~ 104 (218)
+..|. .+++.+..+...+.. ..++.+|||+|||+|..+..+++. +..+|+++|+++ +++.+++|++..++. ++
T Consensus 227 ~~~G~~~vqd~~s~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v 303 (445)
T PRK14904 227 LKLGLVSVQNPTQALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-II 303 (445)
T ss_pred HhCcEEEEeCHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eE
Confidence 33343 456655444444433 246789999999999999888653 235899999999 999999999998875 48
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEE
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+++..|..... +..+||.|++..|+.... ....++..+.++|+|||.+++.++
T Consensus 304 ~~~~~Da~~~~-----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 304 ETIEGDARSFS-----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred EEEeCcccccc-----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 88888775432 346799999976653211 124689999999999995555555
Q ss_pred eeccCChHHHHHHHHHhC-CcEEEE
Q 046623 163 SEVRTRTGDCLHELIMSQ-GFRVIE 186 (218)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~-gf~~~~ 186 (218)
+.....-+..+..+++.+ +|....
T Consensus 379 s~~~~Ene~~v~~~l~~~~~~~~~~ 403 (445)
T PRK14904 379 SIEPEENELQIEAFLQRHPEFSAEP 403 (445)
T ss_pred CCChhhHHHHHHHHHHhCCCCEEec
Confidence 554444455566665554 466543
No 116
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.35 E-value=4.3e-11 Score=103.83 Aligned_cols=149 Identities=16% Similarity=0.079 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 39 ALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 39 ~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
...+...+.+.. ..++.+|||+|||+|.+++.+++.. .+|+++|+++ +++.+++|+..+++. +++++.+|+.+...
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHH
Confidence 334444444322 2355799999999999999998764 4899999999 999999999999875 58999988754321
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCCC
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGGC 195 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~~ 195 (218)
.......+||+|++++|-. .....+++.+.+ ++|++ +++++.. .......+..+ .+.||.+..+ ++.+.|..
T Consensus 355 ~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~--ivyvsc~-p~tlard~~~l-~~~gy~~~~~~~~DmFP~T 427 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPER--IVYVSCN-PATLARDLEFL-CKEGYGITWVQPVDMFPHT 427 (431)
T ss_pred HHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCE--EEEEcCC-HHHHHHHHHHH-HHCCeeEEEEEEeccCCCC
Confidence 1101235799999977732 334667776664 77877 4444433 13344455555 7789999888 77776654
Q ss_pred C
Q 046623 196 P 196 (218)
Q Consensus 196 ~ 196 (218)
.
T Consensus 428 ~ 428 (431)
T TIGR00479 428 A 428 (431)
T ss_pred C
Confidence 3
No 117
>PTZ00146 fibrillarin; Provisional
Probab=99.35 E-value=1.9e-10 Score=93.58 Aligned_cols=149 Identities=15% Similarity=0.084 Sum_probs=97.1
Q ss_pred ccccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCc
Q 046623 32 GAWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGR 103 (218)
Q Consensus 32 g~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~ 103 (218)
.|.+|+--. .|+..+.. .+..++.+|||+|||+|.++..++.. + ...|+++|+++ +.+.+....+.. .+
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~N 182 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PN 182 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CC
Confidence 488998543 56655544 33357789999999999999999865 3 24899999998 776655554332 34
Q ss_pred eEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee---ccCChHHH----HHHH
Q 046623 104 VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE---VRTRTGDC----LHEL 176 (218)
Q Consensus 104 ~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~---~~~~~~~~----~~~~ 176 (218)
+.++..|....... ....+++|+|+++.. .......++.++.+.|||+|.+++.+-.. .....++. +.++
T Consensus 183 I~~I~~Da~~p~~y-~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L 259 (293)
T PTZ00146 183 IVPIIEDARYPQKY-RMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKL 259 (293)
T ss_pred CEEEECCccChhhh-hcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHH
Confidence 77787776532110 112357999998543 33445566778999999999655532111 11222332 4555
Q ss_pred HHhCCcEEEEE
Q 046623 177 IMSQGFRVIEL 187 (218)
Q Consensus 177 ~~~~gf~~~~~ 187 (218)
++.+|...++
T Consensus 260 -~~~GF~~~e~ 269 (293)
T PTZ00146 260 -KKEGLKPKEQ 269 (293)
T ss_pred -HHcCCceEEE
Confidence 8899998776
No 118
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.35 E-value=2.9e-11 Score=104.65 Aligned_cols=131 Identities=11% Similarity=0.096 Sum_probs=96.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||+|||+|..+..++.. +..+|+++|+++ .++.+++|++..++.+ +.+...|...... ...++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~---~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTE---YVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhh---hhhccCCEE
Confidence 46789999999999999988754 245999999999 9999999999988753 7888888654321 024679999
Q ss_pred EEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh-CCcEEE
Q 046623 129 IMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS-QGFRVI 185 (218)
Q Consensus 129 v~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~-~gf~~~ 185 (218)
+++.|+.... ...+++..+.++|+|||.++..+++......++.+..++.. .+|...
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~ 391 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEe
Confidence 9988874321 23667889999999999655555554445555666666443 356544
Q ss_pred E
Q 046623 186 E 186 (218)
Q Consensus 186 ~ 186 (218)
.
T Consensus 392 ~ 392 (431)
T PRK14903 392 D 392 (431)
T ss_pred c
Confidence 3
No 119
>PRK05785 hypothetical protein; Provisional
Probab=99.35 E-value=1.8e-11 Score=97.22 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|..+..+++....+|+++|+|+ +++.+++. ..++.+|....+. +.++||+|+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~----~d~sfD~v~~~ 117 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPF----RDKSFDVVMSS 117 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCC----CCCCEEEEEec
Confidence 3679999999999999998876334999999999 99988753 1245667665544 67899999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTG 154 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~g 154 (218)
..+++..+.++.++++.++|||.
T Consensus 118 ~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 118 FALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ChhhccCCHHHHHHHHHHHhcCc
Confidence 99999899999999999999994
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.34 E-value=4e-11 Score=95.76 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc--ccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL--SELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~D 126 (218)
.++++|||+|||+|..++.+++. +..+++++|+++ +++.|++|++.+++.++++++.+|..+...... .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 45779999999999988887643 346999999999 999999999999998889999988865422110 1246899
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+|++... ...+..+++.+.++|+|||
T Consensus 147 ~VfiDa~---k~~y~~~~~~~~~ll~~GG 172 (234)
T PLN02781 147 FAFVDAD---KPNYVHFHEQLLKLVKVGG 172 (234)
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCe
Confidence 9998533 2456788999999999999
No 121
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.34 E-value=9.4e-11 Score=97.21 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=86.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC----CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL----GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++.+|||+|||+|.+++.+++.+. +|+++|+++ +++.++++.+.... ...+.+...|+.. ..++||
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-------l~~~fD 214 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-------LSGKYD 214 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-------cCCCcC
Confidence 4678999999999999999998765 899999999 99999999876421 1236777766532 246799
Q ss_pred EEEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeec-----------------------cCChHHHHHHHHHhCC
Q 046623 127 MVIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEV-----------------------RTRTGDCLHELIMSQG 181 (218)
Q Consensus 127 ~Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~-----------------------~~~~~~~~~~~~~~~g 181 (218)
+|++.++++|..+ ...+++.+.+ +.++| +++...+. +....+.+..++++.|
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~--liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLAS-LAEKR--LIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHh-hcCCE--EEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 9999988866433 3456666664 35555 33332110 0012455666668888
Q ss_pred cEEEEEE
Q 046623 182 FRVIELT 188 (218)
Q Consensus 182 f~~~~~~ 188 (218)
|.+....
T Consensus 292 f~v~~~~ 298 (315)
T PLN02585 292 WKVARRE 298 (315)
T ss_pred CEEEEEE
Confidence 8887653
No 122
>PRK06922 hypothetical protein; Provisional
Probab=99.34 E-value=7.8e-12 Score=110.90 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=80.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++ .+..+++++|+++ +++.++++....+ .++.++.+|..+.. ...+.++||+|+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp--~~fedeSFDvVV 492 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLS--SSFEKESVDTIV 492 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCc--cccCCCCEEEEE
Confidence 4678999999999999888765 4456999999999 9999998876655 34777877766532 111457899999
Q ss_pred EcccccCC-------------cchHHHHHHHHHHhcCCCceEE
Q 046623 130 MSDVFYDP-------------EEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 130 ~~~~~~~~-------------~~~~~~l~~~~~lL~~gG~~~i 159 (218)
++.++++. .+..++++.+.+.|||||.+++
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 98877642 3568899999999999995444
No 123
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.34 E-value=1.8e-11 Score=104.31 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=78.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++....+|+++|+|+ +++.++++.+ +. .+++...|+.. ..++||.|+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~-------l~~~fD~Iv 233 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRD-------LNGQFDRIV 233 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhh-------cCCCCCEEE
Confidence 357789999999999999998865445999999999 9999998874 22 26676666543 236799999
Q ss_pred EcccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+..++++. .....+++.+.++|+|||.+++.
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 98888775 34678999999999999955544
No 124
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.33 E-value=4.8e-11 Score=93.36 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||+|||+|..+..+++. +..+++++|+|+ +++.++++. ..+.+..+|+.+ .. +.++||+|+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~----~~~sfD~V~ 110 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PF----KDNFFDLVL 110 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CC----CCCCEEEEE
Confidence 35678999999999999998765 456999999999 999998764 236677777665 22 567899999
Q ss_pred EcccccCCc--chHHHHHHHHHHh
Q 046623 130 MSDVFYDPE--EMVGLGKTLKRVC 151 (218)
Q Consensus 130 ~~~~~~~~~--~~~~~l~~~~~lL 151 (218)
++.++++.. ...++++++.+++
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCS 134 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhc
Confidence 999998753 3566666666665
No 125
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=2.4e-12 Score=94.35 Aligned_cols=155 Identities=22% Similarity=0.247 Sum_probs=113.6
Q ss_pred ccccccchhHHHHHHHHhcCCC-CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCC--Cc
Q 046623 30 LTGAWLWDSALILAQFISTHFD-FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLG--GR 103 (218)
Q Consensus 30 ~~g~~~w~~~~~l~~~l~~~~~-~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~--~~ 103 (218)
+....+|++...|+.++...++ ..+.+|||+|.| +|.-++.+| +.+...|..+|-+. +++..++..-.|... .+
T Consensus 5 tgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ts 84 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTS 84 (201)
T ss_pred CCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccce
Confidence 3456799999999999988554 678899999999 777777776 45567899999999 998888777666322 22
Q ss_pred eEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 104 VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 104 ~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
+.+...++..... ......||+|++.++++..+-.+.+++.+..+|+|.|.. ++.++........+...+ ...||.
T Consensus 85 c~vlrw~~~~aqs--q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~A-l~fsPRRg~sL~kF~de~-~~~gf~ 160 (201)
T KOG3201|consen 85 CCVLRWLIWGAQS--QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRA-LLFSPRRGQSLQKFLDEV-GTVGFT 160 (201)
T ss_pred ehhhHHHHhhhHH--HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccce-eEecCcccchHHHHHHHH-HhceeE
Confidence 3333333322211 124568999999999988788899999999999999953 333444445677777777 889988
Q ss_pred EEEEE
Q 046623 184 VIELT 188 (218)
Q Consensus 184 ~~~~~ 188 (218)
+...+
T Consensus 161 v~l~e 165 (201)
T KOG3201|consen 161 VCLEE 165 (201)
T ss_pred EEecc
Confidence 87664
No 126
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.3e-11 Score=93.92 Aligned_cols=109 Identities=24% Similarity=0.204 Sum_probs=83.9
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
.+.++......++.+|||||||+|..+-.+++... +|+.+|..+ ..+.|++|++..+..+ +.++.+|-...-.
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~---- 134 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWP---- 134 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCC----
Confidence 33333333346789999999999999999998855 999999999 9999999999999876 9999988665543
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
...+||.|+..... ..+-+.+.+.|++||++++-+.
T Consensus 135 ~~aPyD~I~Vtaaa------~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAA------PEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeecc------CCCCHHHHHhcccCCEEEEEEc
Confidence 56899999985442 2233446778899996666554
No 127
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=3.3e-11 Score=93.96 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=112.2
Q ss_pred ccccccccchhHHHHHHHHhcCCCCC-CCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCce
Q 046623 28 RPLTGAWLWDSALILAQFISTHFDFQ-NKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRV 104 (218)
Q Consensus 28 ~~~~g~~~w~~~~~l~~~l~~~~~~~-~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~ 104 (218)
...+-.|++||....... .. +.+++|||+|.|.+++.+| ..+..+++.+|... -+...+....+.++++ +
T Consensus 47 ~e~~~rHilDSl~~~~~~------~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v 119 (215)
T COG0357 47 EELWQRHILDSLVLLPYL------DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-V 119 (215)
T ss_pred HHHHHHHHHHHhhhhhcc------cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-e
Confidence 344455556654433322 12 6799999999999999987 44556899999999 8888888888888764 8
Q ss_pred EEEEeecCCCCccccccCCC-CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 105 EVRELVWGSDDLSQLSELGE-FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~-~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
+++....++... ... ||+|++..+ +.+..+.+.+..++++||.++++.....+....+.-... ...++.
T Consensus 120 ~i~~~RaE~~~~-----~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~-~~~~~~ 189 (215)
T COG0357 120 EIVHGRAEEFGQ-----EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAI-LPLGGQ 189 (215)
T ss_pred EEehhhHhhccc-----ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHH-HhhcCc
Confidence 888877665542 223 999999766 778999999999999999666565555555555554554 788888
Q ss_pred EEEEEccCCCCCCCceeE
Q 046623 184 VIELTCQLGGGCPEAFAV 201 (218)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l 201 (218)
+..+.....+.....+.+
T Consensus 190 ~~~~~~~~~p~~~~~r~l 207 (215)
T COG0357 190 VEKVFSLTVPELDGERHL 207 (215)
T ss_pred EEEEEEeecCCCCCceEE
Confidence 888865555544433333
No 128
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.31 E-value=5.2e-11 Score=100.56 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=89.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..+..+||||||+|..++.+|+. +...++|+|+++ ++..+.+++..+++.+ +.++.+|..... ...+.+++|.|+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll--~~~~~~s~D~I~ 197 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLL--ELLPSNSVEKIF 197 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhh--hhCCCCceeEEE
Confidence 34568999999999999999865 446899999999 9999999998888764 899988875432 112568899999
Q ss_pred EcccccCCcc------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 130 MSDVFYDPEE------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 130 ~~~~~~~~~~------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
++.|..+... ...+++.+.++|+||| .+.+.+....+....+..+
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG--~l~l~TD~~~y~~~~~e~~ 248 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGG--TLELRTDSELYFEFSLELF 248 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCc--EEEEEEECHHHHHHHHHHH
Confidence 8765433222 2689999999999999 4555555445554444554
No 129
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=8.8e-12 Score=95.06 Aligned_cols=102 Identities=18% Similarity=0.079 Sum_probs=82.6
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceE-EEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVE-VRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
..+||+|||+|.--.+.-..+..+|+++|.++ +.+.+.+.++++.-.+ +. |+.++.++...- +++++|.|++.-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l---~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQL---ADGSYDTVVCTL 153 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCccc---ccCCeeeEEEEE
Confidence 46899999999876666544456999999999 9999999988875443 55 888887776521 678999999988
Q ss_pred cccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++=+..++.+.+.++.++|+|||+++++
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 8878899999999999999999955554
No 130
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.31 E-value=5.7e-12 Score=97.52 Aligned_cols=161 Identities=18% Similarity=0.147 Sum_probs=106.5
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL 116 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 116 (218)
....|.+.|.....-+-.++||+|||||..+..+-.. +.+++++|+|. +++.+...- +-+.. ...+.....
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg----~YD~L--~~Aea~~Fl- 181 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG----LYDTL--YVAEAVLFL- 181 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc----chHHH--HHHHHHHHh-
Confidence 3445555555422222468999999999999999655 45899999999 998875442 11111 111111111
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee------------ccCChHHHHHHHHHhCCcEE
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE------------VRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~------------~~~~~~~~~~~~~~~~gf~~ 184 (218)
.....++||+|++.+++-+...++.++-.+..+|+|||.+.+-+.+- .+...+..+...+...||.+
T Consensus 182 -~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 182 -EDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred -hhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence 00145789999999999999999999999999999999322221111 11124555666668999999
Q ss_pred EEE---EccCCCCCCCceeEEEecCC
Q 046623 185 IEL---TCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 185 ~~~---~~~~~~~~~~~~~l~~~~~~ 207 (218)
+.+ +++.+.++|.--.++..++|
T Consensus 261 i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 261 IAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred EEeecccchhhcCCCCCCceEEEecC
Confidence 887 67777777776666665543
No 131
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.31 E-value=7.7e-11 Score=94.19 Aligned_cols=130 Identities=20% Similarity=0.191 Sum_probs=95.5
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
....+|.+|||-|+|+|.++..+++. +..+|+..|..+ .++.|++|++..++.+++.+...|+....... .....+
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~-~~~~~~ 114 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE-ELESDF 114 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST-T-TTSE
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc-cccCcc
Confidence 33468999999999999999999754 336999999999 99999999999999888999999986433211 023679
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHh-cCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVC-GTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL-~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
|.|++. .+++...+..+.+.| ++||.+.+++ +--.++......+ ++.||..+++
T Consensus 115 DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fs--P~ieQv~~~~~~L-~~~gf~~i~~ 169 (247)
T PF08704_consen 115 DAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFS--PCIEQVQKTVEAL-REHGFTDIET 169 (247)
T ss_dssp EEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEE--SSHHHHHHHHHHH-HHTTEEEEEE
T ss_pred cEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEEC--CCHHHHHHHHHHH-HHCCCeeeEE
Confidence 999983 356778899999999 8999444443 3335677777777 8899987664
No 132
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.30 E-value=8.5e-11 Score=99.65 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=107.7
Q ss_pred HHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 39 ALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 39 ~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
...|.+++.......+.++||++||+|.+++.+++. +.+|+++|.++ +++.+++|++.+++. +++++.+|..+....
T Consensus 192 ~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 192 NEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQA 269 (362)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHH
Confidence 344555544421122357999999999999988776 45999999999 999999999999885 589999887553211
Q ss_pred ccc------------cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 118 QLS------------ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 118 ~~~------------~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
... ...+||+|++++|- .....++++.+.+ +++ +++++... ......+..+ .+ ||.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~--ivyvSC~p-~tlarDl~~L-~~-gY~l~ 339 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YER--ILYISCNP-ETLCENLETL-SQ-THKVE 339 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCC--EEEEEeCH-HHHHHHHHHH-cC-CcEEE
Confidence 000 01258999997773 3445666666654 555 45544332 3444556666 44 99999
Q ss_pred EE-EccCCCCCCCceeEEEecC
Q 046623 186 EL-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 186 ~~-~~~~~~~~~~~~~l~~~~~ 206 (218)
++ |+.+.|.......+..+.+
T Consensus 340 ~v~~~DmFPqT~HvE~v~lL~r 361 (362)
T PRK05031 340 RFALFDQFPYTHHMECGVLLEK 361 (362)
T ss_pred EEEEcccCCCCCcEEEEEEEEe
Confidence 98 8999998888888776653
No 133
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.28 E-value=3.6e-11 Score=97.70 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCCH----HHHHHHHhC------CCeEEEecCcc-hHHHHHHHHH----HhC------------------
Q 046623 53 QNKSVLELGAGAGL----PGLTAARLG------ATRVVLTDVKP-LLPGLINNVE----ANG------------------ 99 (218)
Q Consensus 53 ~~~~vLDlG~G~G~----~~~~l~~~~------~~~v~~~D~~~-~~~~a~~~~~----~~~------------------ 99 (218)
++.+|+|+|||+|. +++.+++.. ..+++++|+|+ +++.|++..- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 455554432 24899999999 9999987531 001
Q ss_pred ----CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCc--chHHHHHHHHHHhcCCC
Q 046623 100 ----LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPE--EMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 100 ----~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~--~~~~~l~~~~~lL~~gG 155 (218)
+..++.|...|+.+... +.++||+|++.+++++.. ....+++.+.++|+|||
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~----~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP----PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC----ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe
Confidence 12358888888876543 467899999999987753 55689999999999999
No 134
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.28 E-value=8e-11 Score=91.41 Aligned_cols=132 Identities=16% Similarity=0.077 Sum_probs=90.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
++.+|||+|||+|.++..++......++++|+++ +++.++++ .++++.+|+...... ...++||+|+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~--~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEA--FPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccc--cCCCCcCEEEEh
Confidence 4679999999999999888755445789999999 88776532 256777777542110 145789999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEe------------------------------eccCChHHHHHHHHHhCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS------------------------------EVRTRTGDCLHELIMSQG 181 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~------------------------------~~~~~~~~~~~~~~~~~g 181 (218)
.++++..+...+++++.+.++++ ++.... ..+....+.+..++++.|
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~~~---ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGRHA---IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCCeE---EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence 99999989999988888776542 111000 001223445556669999
Q ss_pred cEEEEEEccCCCCCCC
Q 046623 182 FRVIELTCQLGGGCPE 197 (218)
Q Consensus 182 f~~~~~~~~~~~~~~~ 197 (218)
|.+.+.......+.+.
T Consensus 160 f~v~~~~~~~~~~~~~ 175 (194)
T TIGR02081 160 LRILDRAAFDVDGRGG 175 (194)
T ss_pred CEEEEEEEeccccccc
Confidence 9998886555544433
No 135
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.28 E-value=2.8e-11 Score=98.53 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=83.5
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..+++++.|||+|||+|.++.+++..|+++|.++|.+++.+.|++..+.|++.+++.++.+.+++.. ..++.|+|
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-----LPEk~Dvi 247 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-----LPEKVDVI 247 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-----CchhccEE
Confidence 3458899999999999999999999999999999999999999999999999999999999887765 35789999
Q ss_pred EEccc---ccCCcchHHHHHHHHHHhcCCCc
Q 046623 129 IMSDV---FYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 129 v~~~~---~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
++-++ +++.-.++..+. +++.|+|+|.
T Consensus 248 ISEPMG~mL~NERMLEsYl~-Ark~l~P~Gk 277 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLH-ARKWLKPNGK 277 (517)
T ss_pred EeccchhhhhhHHHHHHHHH-HHhhcCCCCc
Confidence 98443 233333444443 4589999993
No 136
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.27 E-value=2.8e-10 Score=89.09 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=102.4
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE-eecC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE-LVWG 112 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~-~d~~ 112 (218)
+...+|...+.. .+.++|||||++.|..++.++.. + ..+++.+|.++ ..+.|++|+++.++.+++..+. +|..
T Consensus 46 e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 445555555544 46789999999999999998643 3 35899999999 9999999999999998888887 4554
Q ss_pred CCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC-----C-----------hHHHHHHH
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT-----R-----------TGDCLHEL 176 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~-----~-----------~~~~~~~~ 176 (218)
+.... ...++||+|++.. ....+.++++.+.++|+||| ++++.+.... . ...+...+
T Consensus 123 ~~l~~--~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GG--liv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
T COG4122 123 DVLSR--LLDGSFDLVFIDA---DKADYPEYLERALPLLRPGG--LIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYL 195 (219)
T ss_pred HHHHh--ccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCc--EEEEeecccCCccCCccchhHHHHHHHHHHHHHHH
Confidence 43221 1458999999842 24678999999999999999 5554333221 1 34455555
Q ss_pred HHhCCcEEEEEE
Q 046623 177 IMSQGFRVIELT 188 (218)
Q Consensus 177 ~~~~gf~~~~~~ 188 (218)
....++...-+|
T Consensus 196 ~~~~~~~t~~lP 207 (219)
T COG4122 196 LEDPRYDTVLLP 207 (219)
T ss_pred hhCcCceeEEEe
Confidence 455667666666
No 137
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.27 E-value=1.7e-10 Score=97.43 Aligned_cols=155 Identities=14% Similarity=0.053 Sum_probs=106.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
..|.+++.+.....+.+|||+|||+|.+++.+++.. .+|+++|+++ +++.+++|++.+++. ++.++.+|+.+.....
T Consensus 184 ~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~ 261 (353)
T TIGR02143 184 IKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAM 261 (353)
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHH
Confidence 344444444222223479999999999999888764 5999999999 999999999999885 4889988876532110
Q ss_pred cc-------c-----CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 119 LS-------E-----LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 119 ~~-------~-----~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
.. . ...+|+|++++| .......+++.+.+ |++ +++++... ......+..+ . .+|.+.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~--ivYvsC~p-~tlaRDl~~L-~-~~Y~l~~ 331 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YER--ILYISCNP-ETLKANLEQL-S-ETHRVER 331 (353)
T ss_pred hhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCc--EEEEEcCH-HHHHHHHHHH-h-cCcEEEE
Confidence 00 0 124899999777 33455666666654 665 55554332 3344555555 3 4599988
Q ss_pred E-EccCCCCCCCceeEEEecC
Q 046623 187 L-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 187 ~-~~~~~~~~~~~~~l~~~~~ 206 (218)
+ |+.+.|.......+..+.+
T Consensus 332 v~~~DmFP~T~HvE~v~lL~r 352 (353)
T TIGR02143 332 FALFDQFPYTHHMECGVLLER 352 (353)
T ss_pred EEEcccCCCCCcEEEEEEEEe
Confidence 8 8999998888887776653
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=99.26 E-value=2.7e-11 Score=95.47 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=71.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL----GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~----~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.+.+|||+|||+|.+++.+++. +..+++++|+++ +++.+++|.. .+.++..|+.... ...+||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~-----~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE-----FDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc-----ccCCccE
Confidence 4679999999999999998754 235899999999 9999998752 3778888876433 2458999
Q ss_pred EEEcccccCCc------------chHHHHHHHHHHhcCCC
Q 046623 128 VIMSDVFYDPE------------EMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 128 Iv~~~~~~~~~------------~~~~~l~~~~~lL~~gG 155 (218)
|++|+|++... ....+++.+.+++++|+
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 99999997421 14558888888777766
No 139
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.25 E-value=7.9e-11 Score=103.43 Aligned_cols=102 Identities=23% Similarity=0.212 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|..+..+++.+ .+++++|+++ +++.++.. ++...++.++..|+...... .+.++||+|++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~--~~~~~fD~I~~ 109 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLN--ISDGSVDLIFS 109 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccC--CCCCCEEEEeh
Confidence 456799999999999999998875 4999999999 88776542 22224588888887543211 14578999999
Q ss_pred cccccCCcc--hHHHHHHHHHHhcCCCceEE
Q 046623 131 SDVFYDPEE--MVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 131 ~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i 159 (218)
+.++++..+ ..++++.+.++|+|||.+++
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999887654 67899999999999994443
No 140
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.24 E-value=8.8e-11 Score=80.33 Aligned_cols=98 Identities=23% Similarity=0.203 Sum_probs=77.7
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+++|+|||.|..+..+++....+++++|.++ +...+++...... ...+.+...|+.+... ....++|+|+++.++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPP---EADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhcc---ccCCceEEEEEccce
Confidence 5899999999999888775557999999999 8888875443333 2457888877765532 134689999999998
Q ss_pred cC-CcchHHHHHHHHHHhcCCCce
Q 046623 135 YD-PEEMVGLGKTLKRVCGTGRHT 157 (218)
Q Consensus 135 ~~-~~~~~~~l~~~~~lL~~gG~~ 157 (218)
++ ......+++.+.+.++++|.+
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~ 100 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVL 100 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEE
Confidence 88 788999999999999999933
No 141
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.24 E-value=2e-10 Score=95.29 Aligned_cols=123 Identities=20% Similarity=0.185 Sum_probs=97.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..|.+|+|..||.|.+++.+|+.+...|+++|+|| +++.+++|++.|++.+.+..+.+|...... ....+|.|++
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~----~~~~aDrIim 262 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP----ELGVADRIIM 262 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh----ccccCCEEEe
Confidence 45889999999999999999999887799999999 999999999999999889999999876654 2378999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCC---hHHHHHHHHHhCCc
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTR---TGDCLHELIMSQGF 182 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~---~~~~~~~~~~~~gf 182 (218)
+.+ .....++..+.++++++|.+.++...+.... ....+.....+.+.
T Consensus 263 ~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 263 GLP----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred CCC----CcchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence 877 3457899999999999995555544443332 33444444344544
No 142
>PLN02476 O-methyltransferase
Probab=99.23 E-value=4e-10 Score=91.46 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=96.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc--ccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL--SELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~D 126 (218)
.+.++|||+|+++|..++.++.. + ..+++++|.++ ..+.|++|++..|+.++++++.+|..+...... ...++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 35679999999999999998754 2 34799999999 999999999999998889999988765432110 0136899
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHHhCCcEEEEEEcc
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
+|++... ...+..+++.+.++|+||| ++++..-... ...++.+.+..+..|....+|+.
T Consensus 197 ~VFIDa~---K~~Y~~y~e~~l~lL~~GG--vIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPig 269 (278)
T PLN02476 197 FAFVDAD---KRMYQDYFELLLQLVRVGG--VIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIG 269 (278)
T ss_pred EEEECCC---HHHHHHHHHHHHHhcCCCc--EEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeC
Confidence 9999543 3567889999999999999 4332222110 13455555545566666666643
No 143
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4.5e-10 Score=96.74 Aligned_cols=148 Identities=20% Similarity=0.130 Sum_probs=105.2
Q ss_pred hHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 38 SALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 38 ~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
....|..++.. ....++.++||+.||.|.+++.+|+. ..+|+++|+++ +++.|++|++.|++.+ ++|+.++.++..
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~ 354 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHh
Confidence 34455555554 23356789999999999999999976 45999999999 9999999999999987 999998877665
Q ss_pred ccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCCCC
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLGGG 194 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~~~ 194 (218)
.... ....+|.|+.++|= ......+++.+.+. +|.. +++++... .+....+..+ .+.|+.+.++ ++.+.|.
T Consensus 355 ~~~~-~~~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~--IvYVSCNP-~TlaRDl~~L-~~~gy~i~~v~~~DmFP~ 426 (432)
T COG2265 355 PAWW-EGYKPDVVVVDPPR--AGADREVLKQLAKL-KPKR--IVYVSCNP-ATLARDLAIL-ASTGYEIERVQPFDMFPH 426 (432)
T ss_pred hhcc-ccCCCCEEEECCCC--CCCCHHHHHHHHhc-CCCc--EEEEeCCH-HHHHHHHHHH-HhCCeEEEEEEEeccCCC
Confidence 4211 23578999997662 23445777777744 4443 55544332 3445556666 7889988888 6665554
Q ss_pred C
Q 046623 195 C 195 (218)
Q Consensus 195 ~ 195 (218)
.
T Consensus 427 T 427 (432)
T COG2265 427 T 427 (432)
T ss_pred c
Confidence 3
No 144
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.22 E-value=3.1e-10 Score=92.70 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=68.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
+..+|||+|||+|..+..+++.. ...++++|+|+ +++.|+++. .++.+..+|..+.+. +.++||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~----~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPF----ADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCC----cCCceeE
Confidence 45689999999999998886542 13799999999 999887653 347788888776543 5678999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|++... ...++++.++|+|||.++++
T Consensus 155 I~~~~~-------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 155 IIRIYA-------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred EEEecC-------CCCHHHHHhhccCCCEEEEE
Confidence 997432 23457889999999955444
No 145
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.20 E-value=2.4e-09 Score=82.74 Aligned_cols=120 Identities=19% Similarity=0.158 Sum_probs=78.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc----ccccCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS----QLSELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~~ 124 (218)
.++.+|||+|||+|.++..+++. +..+++++|+++ . .. .++.++..|+.+.... ...+.++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 57889999999999999988654 335799999998 5 11 2367788887653210 0113567
Q ss_pred CcEEEEcccccC-----C------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 125 FDMVIMSDVFYD-----P------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 125 ~D~Iv~~~~~~~-----~------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
||+|+++.+.+. . .....++..+.++|+|||.+++.. .......+.+..+ +. .|....+
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~--~~~~~~~~~l~~l-~~-~~~~~~~ 168 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV--FQGEEIDEYLNEL-RK-LFEKVKV 168 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE--ccCccHHHHHHHH-Hh-hhceEEE
Confidence 999998643210 1 123678999999999999544433 2234455666665 33 4644444
No 146
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.20 E-value=4.3e-10 Score=92.89 Aligned_cols=142 Identities=23% Similarity=0.190 Sum_probs=106.7
Q ss_pred hhHHHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe-ecCC
Q 046623 37 DSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL-VWGS 113 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~~ 113 (218)
.-...+++.+.+... .+|..|||-.||||.+.+.+...|+ +++|+|++. ++.-++.|++..++++ ..+... |..+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~ 257 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN 257 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc
Confidence 344678888888433 6788999999999999999999987 999999999 9999999999998765 444444 7776
Q ss_pred CCccccccCCCCcEEEEcccccCC---------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEE
Q 046623 114 DDLSQLSELGEFDMVIMSDVFYDP---------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~~~~~~~~---------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~ 184 (218)
.+. +..++|.|++.+|+.-. ....++++.+...|++||.++++.. .....++ .+.+|.+
T Consensus 258 lpl----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~~~~-~~~~f~v 325 (347)
T COG1041 258 LPL----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPRHEL-EELGFKV 325 (347)
T ss_pred CCC----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------CcchhhH-hhcCceE
Confidence 664 45579999997776532 2367888999999999993333332 1223444 6889998
Q ss_pred EEE-EccCC
Q 046623 185 IEL-TCQLG 192 (218)
Q Consensus 185 ~~~-~~~~~ 192 (218)
... +.+.+
T Consensus 326 ~~~~~~~~H 334 (347)
T COG1041 326 LGRFTMRVH 334 (347)
T ss_pred EEEEEEeec
Confidence 776 54433
No 147
>PRK04457 spermidine synthase; Provisional
Probab=99.19 E-value=1.8e-10 Score=93.45 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
++++|||||||+|.++..+++. +..+++++|+++ .++.+++++...+..++++++.+|..+.... ..++||+|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEE
Confidence 4679999999999999988654 456899999999 9999999987655446788888876543211 2358999998
Q ss_pred cccccCCc-----chHHHHHHHHHHhcCCCceE
Q 046623 131 SDVFYDPE-----EMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 131 ~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~ 158 (218)
+ .+.... ....+++.+.++|+|||.++
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 4 332211 23799999999999999433
No 148
>PRK06202 hypothetical protein; Provisional
Probab=99.19 E-value=2e-10 Score=91.68 Aligned_cols=93 Identities=23% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh----CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL----GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~----~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.++.+|||+|||+|.++..+++. |. .+++++|+++ +++.++++....+ +.+...+...... ..++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~----~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA----EGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc----cCCCc
Confidence 45679999999999988887642 32 4899999999 9999988765443 4444444333322 45689
Q ss_pred cEEEEcccccCCcc--hHHHHHHHHHHhc
Q 046623 126 DMVIMSDVFYDPEE--MVGLGKTLKRVCG 152 (218)
Q Consensus 126 D~Iv~~~~~~~~~~--~~~~l~~~~~lL~ 152 (218)
|+|+++.++++..+ ...+++++.++++
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC
Confidence 99999999998765 4578999998887
No 149
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.19 E-value=1.3e-10 Score=90.88 Aligned_cols=110 Identities=25% Similarity=0.251 Sum_probs=77.2
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
.++..+......++.+|||||||+|..+..++.. +. .+|+++|.++ ..+.|++++...+.. ++.++.+|......
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~- 137 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP- 137 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG-
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc-
Confidence 4444444444568899999999999999988755 43 3699999999 999999999998875 48999888654433
Q ss_pred ccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 118 QLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
...+||.|++..... .+-..+.+.|++||++++.+
T Consensus 138 ---~~apfD~I~v~~a~~------~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 ---EEAPFDRIIVTAAVP------EIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp ---GG-SEEEEEESSBBS------S--HHHHHTEEEEEEEEEEE
T ss_pred ---cCCCcCEEEEeeccc------hHHHHHHHhcCCCcEEEEEE
Confidence 557899999965542 33445677899999555443
No 150
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=6.9e-10 Score=92.29 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=77.8
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
.++.++......++.+|||+|||+|..+..+++... .+|+++|+++ +++.++++++.++.. ++.++.+|......
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~- 145 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVP- 145 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccc-
Confidence 334444433335678999999999999999876532 3799999999 999999999988874 47888877654332
Q ss_pred ccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEE
Q 046623 118 QLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i 159 (218)
...+||+|++.... ..+...+.+.|+|||.+++
T Consensus 146 ---~~~~fD~Ii~~~g~------~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 146 ---EFAPYDVIFVTVGV------DEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred ---ccCCccEEEECCch------HHhHHHHHHhcCCCCEEEE
Confidence 33579999985332 2334556789999995444
No 151
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.18 E-value=1.7e-09 Score=85.99 Aligned_cols=159 Identities=31% Similarity=0.457 Sum_probs=110.5
Q ss_pred ccccccccchhHHHHHHHHhcC-C------CCC-----CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHH
Q 046623 28 RPLTGAWLWDSALILAQFISTH-F------DFQ-----NKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNV 95 (218)
Q Consensus 28 ~~~~g~~~w~~~~~l~~~l~~~-~------~~~-----~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~ 95 (218)
........|+....++.++... . ... ..+|||+|+|+|..++.++......|+..|....+...+.|.
T Consensus 49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~ 128 (248)
T KOG2793|consen 49 EQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR 128 (248)
T ss_pred ccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh
Confidence 3445667899888888887551 1 122 345999999999999999886666999999877554444443
Q ss_pred HH-----hCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChH
Q 046623 96 EA-----NGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG 170 (218)
Q Consensus 96 ~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~ 170 (218)
.. ++....+.+..++|.............+|+|++++++|+....+.++..++.+|..++ .++..+..|....
T Consensus 129 ~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~--~i~l~~~lr~~~~ 206 (248)
T KOG2793|consen 129 DKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDG--TIFLAYPLRRDAA 206 (248)
T ss_pred hhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCC--eEEEEEecccchH
Confidence 33 3333468888899987765443333339999999999999999999999999999998 5555556555322
Q ss_pred HHHHHHHHhCCcEEEEEE
Q 046623 171 DCLHELIMSQGFRVIELT 188 (218)
Q Consensus 171 ~~~~~~~~~~gf~~~~~~ 188 (218)
......+.+..+...+++
T Consensus 207 ~~~~~~~~~~~~~~~~v~ 224 (248)
T KOG2793|consen 207 WEIEVLLFKKDLKIFDVV 224 (248)
T ss_pred HHHHHHHhhhhhccceee
Confidence 333333355555555553
No 152
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.18 E-value=1.8e-10 Score=87.76 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
..+++|+. ++.+|||+|||.|.+...+......+..|+|+++ .+..+.++ | +.++++|+.....
T Consensus 5 ~~I~~~I~-----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~-- 69 (193)
T PF07021_consen 5 QIIAEWIE-----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLA-- 69 (193)
T ss_pred HHHHHHcC-----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHh--
Confidence 34555544 5789999999999999988754445899999998 66655433 2 7789988876532
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHhc
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCG 152 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~ 152 (218)
..++++||+|+++..+.....++.+++++.|.-+
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred hCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 2378999999999999988889999888876644
No 153
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.17 E-value=2.6e-10 Score=89.06 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=100.4
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.+.+|..++.. .+.++||||||++|..++.+++. + ..+++.+|.++ ..+.|+++++..+..++++++.+|..+.
T Consensus 33 ~g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 33 TGQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred HHHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh
Confidence 33444444433 45679999999999999999864 2 35999999999 9999999999999888899999887543
Q ss_pred Ccccc--ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC--------------ChHHHHHHHHH
Q 046623 115 DLSQL--SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT--------------RTGDCLHELIM 178 (218)
Q Consensus 115 ~~~~~--~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~--------------~~~~~~~~~~~ 178 (218)
..... ...++||+|++... ...+..+++.+.++|++|| ++++.+.... ...++.+.+..
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~gg--vii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~ 184 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGG--VIIADNVLWRGSVADPDDEDPKTVAIREFNEYIAN 184 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEE--EEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCe--EEEEccccccceecCccchhhhHHHHHHHHHHHHh
Confidence 22111 11358999999543 3667889999999999999 5554433211 13456666645
Q ss_pred hCCcEEEEEEcc
Q 046623 179 SQGFRVIELTCQ 190 (218)
Q Consensus 179 ~~gf~~~~~~~~ 190 (218)
...|...-+|+.
T Consensus 185 d~~~~~~llpig 196 (205)
T PF01596_consen 185 DPRFETVLLPIG 196 (205)
T ss_dssp -TTEEEEEECST
T ss_pred CCCeeEEEEEeC
Confidence 566666655543
No 154
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.17 E-value=1.4e-10 Score=89.94 Aligned_cols=95 Identities=27% Similarity=0.245 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|+|+.||.|.+++.+++. .++.|+++|++| +++.+++|++.|++.+++....+|..... +...+|.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-----~~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-----PEGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-----CccccCEEE
Confidence 46889999999999999999873 345899999999 99999999999999988999998876553 367899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
++.| .....++..+.+++++||
T Consensus 175 m~lp----~~~~~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 175 MNLP----ESSLEFLDAALSLLKEGG 196 (200)
T ss_dssp E--T----SSGGGGHHHHHHHEEEEE
T ss_pred ECCh----HHHHHHHHHHHHHhcCCc
Confidence 9877 334578889999999988
No 155
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.1e-10 Score=84.24 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=76.8
Q ss_pred HHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc
Q 046623 40 LILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS 117 (218)
Q Consensus 40 ~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (218)
..+...+.+ +.+.+|+.++|+|||.|.++..++..+...|.|+|+++ +++...+|++...++ +++..+|+.+...
T Consensus 34 asM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~- 110 (185)
T KOG3420|consen 34 ASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLEL- 110 (185)
T ss_pred HHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhc-
Confidence 334444544 56689999999999999999888888888999999999 999999999988765 6889999887765
Q ss_pred ccccCCCCcEEEEcccccC
Q 046623 118 QLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~ 136 (218)
..+.||.++.|+||..
T Consensus 111 ---~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 111 ---KGGIFDTAVINPPFGT 126 (185)
T ss_pred ---cCCeEeeEEecCCCCc
Confidence 5588999999999964
No 156
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.16 E-value=2.9e-09 Score=84.05 Aligned_cols=148 Identities=13% Similarity=0.093 Sum_probs=100.5
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHH-------h----CCCCce
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEA-------N----GLGGRV 104 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~-------~----~~~~~~ 104 (218)
.....|.++.......++.+||..|||.|.....++..|. +|+++|+|+ +++.+.+.... . .-...+
T Consensus 27 ~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 105 (226)
T PRK13256 27 SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI 105 (226)
T ss_pred CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence 4455676776653334568999999999999999999988 799999999 99887552100 0 001358
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccC--CcchHHHHHHHHHHhcCCCceEEEEEeecc-------CChHHHHHH
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-------TRTGDCLHE 175 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-------~~~~~~~~~ 175 (218)
++..+|+.+..... ...++||.|+=...+.. .+...++.+.+.++|+|||.++++...... ....+.+..
T Consensus 106 ~~~~gD~f~l~~~~-~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~ 184 (226)
T PRK13256 106 EIYVADIFNLPKIA-NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIK 184 (226)
T ss_pred EEEEccCcCCCccc-cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHH
Confidence 99999988764210 12368999885554433 467889999999999999966666543221 114455666
Q ss_pred HHHhCCcEEEEE
Q 046623 176 LIMSQGFRVIEL 187 (218)
Q Consensus 176 ~~~~~gf~~~~~ 187 (218)
+ -...|.+..+
T Consensus 185 l-f~~~~~i~~l 195 (226)
T PRK13256 185 N-FSAKIKFELI 195 (226)
T ss_pred h-ccCCceEEEe
Confidence 5 3455666655
No 157
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.13 E-value=7.8e-10 Score=84.00 Aligned_cols=87 Identities=21% Similarity=0.112 Sum_probs=67.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+ .+++++|+++ +++.+++++... .+++++.+|+.+... +...+|.|++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~----~~~~~d~vi~ 83 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDL----PKLQPYKVVG 83 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCc----cccCCCEEEE
Confidence 456799999999999999998774 5999999999 999999887542 458899998877653 3346999999
Q ss_pred cccccCCcchHHHHHHHHH
Q 046623 131 SDVFYDPEEMVGLGKTLKR 149 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~ 149 (218)
+.|++. ..+++..+.+
T Consensus 84 n~Py~~---~~~~i~~~l~ 99 (169)
T smart00650 84 NLPYNI---STPILFKLLE 99 (169)
T ss_pred CCCccc---HHHHHHHHHh
Confidence 887753 2344444443
No 158
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.13 E-value=1.4e-09 Score=83.98 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=101.9
Q ss_pred CCCccccccccccchhHHHHHHHHhc---CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 23 DSVTGRPLTGAWLWDSALILAQFIST---HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 23 ~~~~~~~~~g~~~w~~~~~l~~~l~~---~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
|.....|....++-.-...+++.... .+..++.-|||||||+|..+..+...|. ..+++|+|+ +++.|.+.--+
T Consensus 17 d~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e- 94 (270)
T KOG1541|consen 17 DTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE- 94 (270)
T ss_pred hhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-
Confidence 34444555555555544445444333 2333567899999999999999988875 899999999 99998863211
Q ss_pred CCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 99 GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 99 ~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
-+++.+|+....+ +..++||-+++...+.+. ..+..|+..+..+|++|++.++-.+.+...
T Consensus 95 -----gdlil~DMG~Glp---frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~ 166 (270)
T KOG1541|consen 95 -----GDLILCDMGEGLP---FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA 166 (270)
T ss_pred -----cCeeeeecCCCCC---CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH
Confidence 3678888875543 256899988864433211 224567888999999999777666655555
Q ss_pred ChHHHHHHHHHhCCcEE
Q 046623 168 RTGDCLHELIMSQGFRV 184 (218)
Q Consensus 168 ~~~~~~~~~~~~~gf~~ 184 (218)
..+...... ...||.=
T Consensus 167 q~d~i~~~a-~~aGF~G 182 (270)
T KOG1541|consen 167 QIDMIMQQA-MKAGFGG 182 (270)
T ss_pred HHHHHHHHH-HhhccCC
Confidence 565666666 6778774
No 159
>PRK00811 spermidine synthase; Provisional
Probab=99.13 E-value=8.8e-10 Score=90.44 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=76.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhC--C--CCceEEEEeecCCCCccccccCCCCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANG--L--GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~--~--~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
++++||++|||.|..+..+.+. +..+|+++|+++ +++.+++.+...+ . .++++++.+|....... ..++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCccc
Confidence 5679999999999999998776 557999999999 9999999886532 1 35688888876543211 356899
Q ss_pred EEEEcc--cccCCc--chHHHHHHHHHHhcCCCceEE
Q 046623 127 MVIMSD--VFYDPE--EMVGLGKTLKRVCGTGRHTVV 159 (218)
Q Consensus 127 ~Iv~~~--~~~~~~--~~~~~l~~~~~lL~~gG~~~i 159 (218)
+|++.. +..... -..++++.+.+.|+|||.+++
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 999853 221111 136788999999999994443
No 160
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.12 E-value=1.3e-09 Score=92.12 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=96.8
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
.....|..++.......+.++||+.||.|.+++.+|... .+|+|+|.++ +++.|+.|++.|++.+ ++|+.++.++..
T Consensus 180 ~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~ 257 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCC
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchh
Confidence 445556666555222223389999999999999998875 4999999999 9999999999999864 899877654321
Q ss_pred cc-----cc-------ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 116 LS-----QL-------SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 116 ~~-----~~-------~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
.. .+ .....+|+|++.||=. ...+.+++.+.+ +. .+++++... ......+..+ . .|+.
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~--G~~~~~~~~~~~---~~--~ivYvSCnP-~tlaRDl~~L-~-~~y~ 327 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRA--GLDEKVIELIKK---LK--RIVYVSCNP-ATLARDLKIL-K-EGYK 327 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCHHHHHHHHH---SS--EEEEEES-H-HHHHHHHHHH-H-CCEE
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC--CchHHHHHHHhc---CC--eEEEEECCH-HHHHHHHHHH-h-hcCE
Confidence 10 00 0123689999966632 333455555543 32 355555443 3344556666 4 4999
Q ss_pred EEEE-EccCCCCCCCceeEEEecC
Q 046623 184 VIEL-TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 184 ~~~~-~~~~~~~~~~~~~l~~~~~ 206 (218)
+..+ |+.+.|.......+..+.+
T Consensus 328 ~~~v~~~DmFP~T~HvE~v~lL~r 351 (352)
T PF05958_consen 328 LEKVQPVDMFPQTHHVETVALLER 351 (352)
T ss_dssp EEEEEEE-SSTTSS--EEEEEEEE
T ss_pred EEEEEEeecCCCCCcEEEEEEEEe
Confidence 9988 8999988888777766654
No 161
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.11 E-value=1.2e-09 Score=83.70 Aligned_cols=136 Identities=22% Similarity=0.254 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCC-Ce---------EEEecCcc-hHHHHHHHHHHhCCCCceEEE
Q 046623 40 LILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGA-TR---------VVLTDVKP-LLPGLINNVEANGLGGRVEVR 107 (218)
Q Consensus 40 ~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-~~---------v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~ 107 (218)
..++..|..... .++..+||..||+|++.++++..+. .. +++.|+++ +++.++.|++..++...+.+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~ 93 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI 93 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE
Confidence 446666655222 4678999999999999999865433 23 78999999 999999999999988888999
Q ss_pred EeecCCCCccccccCCCCcEEEEcccccCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh
Q 046623 108 ELVWGSDDLSQLSELGEFDMVIMSDVFYDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS 179 (218)
Q Consensus 108 ~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~ 179 (218)
..|...... ..+++|.|++++|+... ..+..+++.+.+.+++ . .++++... .. +...+..
T Consensus 94 ~~D~~~l~~----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~-~v~l~~~~--~~----~~~~~~~ 161 (179)
T PF01170_consen 94 QWDARELPL----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-R-AVFLTTSN--RE----LEKALGL 161 (179)
T ss_dssp E--GGGGGG----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-C-EEEEEESC--CC----HHHHHTS
T ss_pred ecchhhccc----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-C-EEEEEECC--HH----HHHHhcc
Confidence 888776653 56789999999998753 2245566777777777 3 34444322 22 2333355
Q ss_pred CCcEEEEE
Q 046623 180 QGFRVIEL 187 (218)
Q Consensus 180 ~gf~~~~~ 187 (218)
.++...+.
T Consensus 162 ~~~~~~~~ 169 (179)
T PF01170_consen 162 KGWRKRKL 169 (179)
T ss_dssp TTSEEEEE
T ss_pred hhhceEEE
Confidence 56665554
No 162
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.11 E-value=3.9e-10 Score=94.12 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=87.5
Q ss_pred cchhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC---------CCCc
Q 046623 35 LWDSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG---------LGGR 103 (218)
Q Consensus 35 ~w~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~---------~~~~ 103 (218)
.|=-+..+..++.. ....++.+|||||||-|....-....+..+++++|++. .++.|+.+.+... ..-.
T Consensus 43 NwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~ 122 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFI 122 (331)
T ss_dssp HHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccch
Confidence 46677777777664 22237789999999999988888777888999999999 9999998883211 1123
Q ss_pred eEEEEeecCCCCccccccC--CCCcEEEEcccccCC----cchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 104 VEVRELVWGSDDLSQLSEL--GEFDMVIMSDVFYDP----EEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 104 ~~~~~~d~~~~~~~~~~~~--~~~D~Iv~~~~~~~~----~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
..++.+|............ .+||+|-+-..+|+. +....++..+.++|+||| .++.+++
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG--~FIgT~~ 187 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG--YFIGTTP 187 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE--EEEEEEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC--EEEEEec
Confidence 5677777665544333333 489999998877753 456779999999999999 4444433
No 163
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.10 E-value=4e-10 Score=88.06 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=72.5
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
.++|+|||+|..++.++.. ..+|+++|+++ +++.+++.....-.........-+..+ .....+++|+|++..++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~----L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD----LLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccc----ccCCCcceeeehhhhhH
Confidence 8999999999777777877 45999999999 999887664332211101111111111 11246899999998888
Q ss_pred cCCcchHHHHHHHHHHhcCCC-ceEEEEEe
Q 046623 135 YDPEEMVGLGKTLKRVCGTGR-HTVVWAVS 163 (218)
Q Consensus 135 ~~~~~~~~~l~~~~~lL~~gG-~~~i~~~~ 163 (218)
|. .+.+.+.+.+.++|+++| ..++|.+.
T Consensus 111 HW-Fdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HW-FDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hh-hchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 75 889999999999999877 66677665
No 164
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.10 E-value=4.7e-10 Score=97.15 Aligned_cols=98 Identities=27% Similarity=0.323 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
++..|+|+|||+|.++..+++++ +.+|+++|.|+ +...+++.+..++..++|+++.+|+++... ..++|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-----pekvD 260 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-----PEKVD 260 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----SS-EE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----CCcee
Confidence 36789999999999998876554 46999999999 888887777889998899999999887763 45899
Q ss_pred EEEEc--ccccCCcchHHHHHHHHHHhcCCC
Q 046623 127 MVIMS--DVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~~--~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+||+- ..+...+...+.+....+.|||+|
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~G 291 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDG 291 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCC
Confidence 99971 233344667788999999999999
No 165
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.09 E-value=4.6e-10 Score=88.52 Aligned_cols=146 Identities=21% Similarity=0.268 Sum_probs=98.7
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHH-HHHHhCC----------CCce
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLIN-NVEANGL----------GGRV 104 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~-~~~~~~~----------~~~~ 104 (218)
.....|.+++......++.+||..|||.|.....++..|. +|+|+|+++ +++.+.+ +...... ..++
T Consensus 21 ~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 21 EPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp TSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 3467788887764445667999999999999999999987 999999999 9988733 2211110 1347
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccc--cCCcchHHHHHHHHHHhcCCCceEEEEEeec-c-------CChHHHHH
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVF--YDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV-R-------TRTGDCLH 174 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~--~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~-~-------~~~~~~~~ 174 (218)
++..+|+...... ..++||+|+=...+ -..+...+..+.+.++|+|||..++++.... . ....+.+.
T Consensus 100 ~~~~gDfF~l~~~---~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~ 176 (218)
T PF05724_consen 100 TIYCGDFFELPPE---DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVR 176 (218)
T ss_dssp EEEES-TTTGGGS---CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHH
T ss_pred EEEEcccccCChh---hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHH
Confidence 8888898875531 22579999943333 2357889999999999999996333322211 1 12556667
Q ss_pred HHHHhCCcEEEEE
Q 046623 175 ELIMSQGFRVIEL 187 (218)
Q Consensus 175 ~~~~~~gf~~~~~ 187 (218)
.+ -..+|++...
T Consensus 177 ~l-~~~~f~i~~l 188 (218)
T PF05724_consen 177 EL-FGPGFEIEEL 188 (218)
T ss_dssp HH-HTTTEEEEEE
T ss_pred HH-hcCCcEEEEE
Confidence 77 3489998887
No 166
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.09 E-value=4.7e-10 Score=86.06 Aligned_cols=125 Identities=21% Similarity=0.239 Sum_probs=90.8
Q ss_pred eEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 56 SVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
+++|+|||.|.+++.++ ..+..+++.+|.+. -+...+......+++ +++++....++ .. ...+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~----~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PE----YRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TT----TTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cc----cCCCccEEEeehh
Confidence 79999999999999997 44556899999999 888888888888886 48998877766 11 5678999999776
Q ss_pred ccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccC
Q 046623 134 FYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQL 191 (218)
Q Consensus 134 ~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~ 191 (218)
..+..+++.+.+++++||.++++-.........+.-..+ ...+.....++...
T Consensus 125 ----~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~-~~~~~~~~~v~~~~ 177 (184)
T PF02527_consen 125 ----APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAW-KKLGLKVLSVPEFE 177 (184)
T ss_dssp ----SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHH-HCCCEEEEEEEEEE
T ss_pred ----cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHH-HHhCCEEeeecccc
Confidence 678899999999999999444443322222333333333 67777777775443
No 167
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.07 E-value=2.6e-09 Score=88.46 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC-ccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD-LSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~D~I 128 (218)
++.+|||+|||+|..+..+++.. ..+|+++|+|+ +++.+++++....-...+.++.+|+.+.. ...........++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 45799999999999999887653 35899999999 99999888765431223667788886532 1000001123345
Q ss_pred EEcccccCC--cchHHHHHHHHHHhcCCCceE
Q 046623 129 IMSDVFYDP--EEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 129 v~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~ 158 (218)
++..++++. ++...+++.+.+.|+|||.++
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 555566653 456789999999999999443
No 168
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.03 E-value=4.6e-09 Score=83.23 Aligned_cols=140 Identities=17% Similarity=0.164 Sum_probs=86.1
Q ss_pred ccchhHHHHHHHHhcCC-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHH-HHHHHHHhCCCCce-EEEEe
Q 046623 34 WLWDSALILAQFISTHF-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPG-LINNVEANGLGGRV-EVREL 109 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~-a~~~~~~~~~~~~~-~~~~~ 109 (218)
+++.++..|...+.... ..++.+|||+|||+|.++..+++.|+.+|+++|+++ ++.. ++++. ++ .+...
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ 127 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERT 127 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecC
Confidence 55678888888887743 468889999999999999999998888999999999 6654 33331 11 12222
Q ss_pred ecCCCCcccc-ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-------------------CCh
Q 046623 110 VWGSDDLSQL-SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-------------------TRT 169 (218)
Q Consensus 110 d~~~~~~~~~-~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-------------------~~~ 169 (218)
++........ .....+|+++++.. .++..+.++|++ |.+++++-+... ...
T Consensus 128 ni~~~~~~~~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~ 198 (228)
T TIGR00478 128 NIRYVTPADIFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALAL 198 (228)
T ss_pred CcccCCHhHcCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHH
Confidence 2221111111 01235666665332 367888899999 755544322211 013
Q ss_pred HHHHHHHHHhCCcEEEEEEcc
Q 046623 170 GDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 170 ~~~~~~~~~~~gf~~~~~~~~ 190 (218)
......+ .+.||.+..+..+
T Consensus 199 ~~~~~~~-~~~~~~~~~~~~s 218 (228)
T TIGR00478 199 HKVIDKG-ESPDFQEKKIIFS 218 (228)
T ss_pred HHHHHHH-HcCCCeEeeEEEC
Confidence 3334444 6788988877333
No 169
>PRK03612 spermidine synthase; Provisional
Probab=99.02 E-value=1.9e-09 Score=95.58 Aligned_cols=128 Identities=23% Similarity=0.130 Sum_probs=85.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHH--H-h--CC-CCceEEEEeecCCCCccccccCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVE--A-N--GL-GGRVEVRELVWGSDDLSQLSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~--~-~--~~-~~~~~~~~~d~~~~~~~~~~~~~ 123 (218)
.++++|||+|||+|..+..+.+.+. .+++++|+++ +++.++++.. . + .. .++++++..|..+... ...+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~---~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR---KLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---hCCC
Confidence 3567999999999999999887765 6999999999 9999998532 1 1 11 2468888877654321 1346
Q ss_pred CCcEEEEcccccCCc-----chHHHHHHHHHHhcCCCceEEEEEeec--cCChHHHHHHHHHhCCcE
Q 046623 124 EFDMVIMSDVFYDPE-----EMVGLGKTLKRVCGTGRHTVVWAVSEV--RTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~~~~~~--~~~~~~~~~~~~~~~gf~ 183 (218)
+||+|+++.+..... -..++++.+.++|+|||.+++-..... .....+..+.+ ++.||.
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l-~~~gf~ 438 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATL-EAAGLA 438 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHH-HHcCCE
Confidence 899999965432211 134688999999999994333222111 11233444444 888894
No 170
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.01 E-value=5.2e-09 Score=85.39 Aligned_cols=105 Identities=16% Similarity=0.058 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCC---CCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGL---GGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.+++||++|||+|..+..+.+.+ ..+++++|+++ +++.+++++...+. ..+++++..|...... ...++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---DTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH---hCCCCccE
Confidence 45699999999999998887665 56899999999 99999988755321 2356676655432211 12468999
Q ss_pred EEEcccccC--Ccc--hHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYD--PEE--MVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~--~~~--~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+++.+... ... ..++++.+.++|+|||.+++.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 998554221 112 468889999999999944433
No 171
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=3.5e-09 Score=84.90 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=80.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc---cCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS---ELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~ 125 (218)
.+.++|||||+++|..++.++.. + ..+++.+|.++ ..+.|+++++..|+.++++++.++..+....... ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35679999999999999988754 2 35899999999 9999999999999988999999887554321110 13689
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|+|++..- ...+..+++.+.++|++||
T Consensus 158 D~iFiDad---K~~Y~~y~~~~l~ll~~GG 184 (247)
T PLN02589 158 DFIFVDAD---KDNYINYHKRLIDLVKVGG 184 (247)
T ss_pred cEEEecCC---HHHhHHHHHHHHHhcCCCe
Confidence 99998433 3557788899999999999
No 172
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=2.2e-09 Score=83.97 Aligned_cols=130 Identities=23% Similarity=0.318 Sum_probs=94.2
Q ss_pred eEEEECCCCCHHHHHHHHhCC---CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 56 SVLELGAGAGLPGLTAARLGA---TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~---~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+|||+|||.|.....+.+... ..+.++|.++ |++..+++...+- .++.....|+...........+++|+|++-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 799999999988877754322 5899999999 9999998876554 345555566665554334467899999986
Q ss_pred cccc--CCcchHHHHHHHHHHhcCCCceEEEEEee---------------------------ccCChHHHHHHHHHhCCc
Q 046623 132 DVFY--DPEEMVGLGKTLKRVCGTGRHTVVWAVSE---------------------------VRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 132 ~~~~--~~~~~~~~l~~~~~lL~~gG~~~i~~~~~---------------------------~~~~~~~~~~~~~~~~gf 182 (218)
-++. +++.+...++.+.++||||| .+++.... .+....+.+..+|.+.||
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG-~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGG-SLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCc-EEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 6664 35788999999999999999 33331111 112366778888899999
Q ss_pred EEEEEE
Q 046623 183 RVIELT 188 (218)
Q Consensus 183 ~~~~~~ 188 (218)
.....+
T Consensus 231 ~~~~~~ 236 (264)
T KOG2361|consen 231 EEVQLE 236 (264)
T ss_pred chhccc
Confidence 987763
No 173
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.99 E-value=3.9e-08 Score=78.24 Aligned_cols=122 Identities=23% Similarity=0.313 Sum_probs=87.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe-ecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL-VWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~D~Iv 129 (218)
....++||||+|.|..+..++..- .+|.++|.|+ +..++++ .| .+++.. ||.+ ...+||+|.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg----~~vl~~~~w~~-------~~~~fDvIs 156 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KG----FTVLDIDDWQQ-------TDFKFDVIS 156 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CC----CeEEehhhhhc-------cCCceEEEe
Confidence 356789999999999999997763 4899999999 7655443 33 333321 2221 235799999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccC-------------------------ChHHHHHHHHHhCCcEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRT-------------------------RTGDCLHELIMSQGFRV 184 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~-------------------------~~~~~~~~~~~~~gf~~ 184 (218)
|.+++-..+.+..+++.+.+.|+|+|++++-+.-+.++ .+..++ .++...||++
T Consensus 157 cLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v 235 (265)
T PF05219_consen 157 CLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAGFEV 235 (265)
T ss_pred ehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcCCEE
Confidence 99999888999999999999999999555443322211 144455 5568899999
Q ss_pred EEEEcc
Q 046623 185 IELTCQ 190 (218)
Q Consensus 185 ~~~~~~ 190 (218)
.....-
T Consensus 236 ~~~tr~ 241 (265)
T PF05219_consen 236 ERWTRL 241 (265)
T ss_pred EEEecc
Confidence 887333
No 174
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.99 E-value=1.9e-09 Score=91.35 Aligned_cols=102 Identities=16% Similarity=0.189 Sum_probs=79.8
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 54 NKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
+.+|||+.||+|..++.++.. |+.+|+++|+++ +++.+++|++.|++. ++.+...|....... ...+||+|.+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~---~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRY---RNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHH---hCCCCCEEEe
Confidence 358999999999999999876 668999999999 999999999999875 367777665543221 2357999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
||++ ...++++.+.+.++++| ++.++++.
T Consensus 121 -DPfG---s~~~fld~al~~~~~~g-lL~vTaTD 149 (374)
T TIGR00308 121 -DPFG---TPAPFVDSAIQASAERG-LLLVTATD 149 (374)
T ss_pred -CCCC---CcHHHHHHHHHhcccCC-EEEEEecc
Confidence 5553 44689999999999998 55555444
No 175
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.98 E-value=2.9e-09 Score=86.50 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=92.1
Q ss_pred chhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-----CceEEEEe
Q 046623 36 WDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG-----GRVEVREL 109 (218)
Q Consensus 36 w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-----~~~~~~~~ 109 (218)
|=.+.++..+.. ++..++|+|||.|...+..-+.|..+++++|+.+ .++.++++.+.-.-. -.+.|+.+
T Consensus 105 wIKs~LI~~y~~-----~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~ 179 (389)
T KOG1975|consen 105 WIKSVLINLYTK-----RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA 179 (389)
T ss_pred HHHHHHHHHHhc-----cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe
Confidence 444455544433 5678999999999999988888889999999999 999988776532111 12678888
Q ss_pred ecCCCCccccc--cCCCCcEEEEcccccC----CcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 110 VWGSDDLSQLS--ELGEFDMVIMSDVFYD----PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 110 d~~~~~~~~~~--~~~~~D~Iv~~~~~~~----~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
|.......... ...+||+|-+-.++|+ .+...-++.++.++|+||| +++.+.+. ....+..+
T Consensus 180 Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG--~FIgTiPd---sd~Ii~rl 247 (389)
T KOG1975|consen 180 DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGG--VFIGTIPD---SDVIIKRL 247 (389)
T ss_pred ccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCc--EEEEecCc---HHHHHHHH
Confidence 88766543322 2334999998777765 3566778999999999999 55555443 33444444
No 176
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.98 E-value=3.5e-09 Score=90.21 Aligned_cols=100 Identities=24% Similarity=0.279 Sum_probs=76.3
Q ss_pred CCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+.+|||++||+|..++.++. .+..+|+++|+++ +++.+++|++.|++.+ +.+...|...... ..+.||+|+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~----~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLH----EERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHh----hcCCCCEEEEC
Confidence 46899999999999999875 4556899999999 9999999999998864 5677766543211 14569999995
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEe
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
|+ .....+++.+.+.++++| ++.+.++
T Consensus 133 -P~---Gs~~~~l~~al~~~~~~g-ilyvSAt 159 (382)
T PRK04338 133 -PF---GSPAPFLDSAIRSVKRGG-LLCVTAT 159 (382)
T ss_pred -CC---CCcHHHHHHHHHHhcCCC-EEEEEec
Confidence 44 445788888778889998 3444333
No 177
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.94 E-value=1.1e-08 Score=79.32 Aligned_cols=126 Identities=19% Similarity=0.160 Sum_probs=90.4
Q ss_pred eEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 56 SVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
.+||||||.|.+.+.+|+. +-..++|+|+.. .+..+.+.+...++. ++.++.+|..... ....+.+++|-|.++-|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l-~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELL-RRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHH-HHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHH-hhcccCCchheEEEeCC
Confidence 8999999999999998754 557999999999 999988888888875 4999998876532 22235688999987644
Q ss_pred ccCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh--CCcEEEE
Q 046623 134 FYDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS--QGFRVIE 186 (218)
Q Consensus 134 ~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~--~gf~~~~ 186 (218)
=-+. --..++++.+.++|+||| .+.+.+....+.......+ .. .+|....
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG--~l~~~TD~~~y~~~~~~~~-~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGG--ELYFATDVEEYAEWMLEQF-EESHPGFENIE 157 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEE--EEEEEES-HHHHHHHHHHH-HHHSTTEEEE-
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCC--EEEEEeCCHHHHHHHHHHH-HhcCcCeEEcc
Confidence 2221 135789999999999999 6666677667777777776 55 4777664
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=7.3e-09 Score=85.30 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=66.1
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
....++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++...+...+++++.+|+..... ..+|.
T Consensus 32 ~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~------~~~d~ 104 (294)
T PTZ00338 32 AAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF------PYFDV 104 (294)
T ss_pred cCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc------cccCE
Confidence 3335678999999999999999987754 899999999 999999998876655679999998876432 46899
Q ss_pred EEEcccccC
Q 046623 128 VIMSDVFYD 136 (218)
Q Consensus 128 Iv~~~~~~~ 136 (218)
|++|.|++-
T Consensus 105 VvaNlPY~I 113 (294)
T PTZ00338 105 CVANVPYQI 113 (294)
T ss_pred EEecCCccc
Confidence 999887764
No 179
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.94 E-value=6.7e-08 Score=84.26 Aligned_cols=145 Identities=14% Similarity=0.068 Sum_probs=97.9
Q ss_pred cccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 33 AWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 33 ~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
+.+.+.+..+.-.+......++.+|||++||+|.=+.+++.. + ...+++.|+++ -++.+++|+++.|+.+ +.+...
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~ 171 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHF 171 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeC
Confidence 334554444433333112247789999999999998888654 2 35899999999 9999999999999864 666665
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
|...... .....||.|++..|+.... ...++++.+.++|||||.++.-+++-...
T Consensus 172 D~~~~~~---~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~e 248 (470)
T PRK11933 172 DGRVFGA---ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNRE 248 (470)
T ss_pred chhhhhh---hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHH
Confidence 6443211 1235799999988875321 13678899999999999544444444444
Q ss_pred ChHHHHHHHHHhCC
Q 046623 168 RTGDCLHELIMSQG 181 (218)
Q Consensus 168 ~~~~~~~~~~~~~g 181 (218)
.-++.+.++++++.
T Consensus 249 ENE~vV~~~L~~~~ 262 (470)
T PRK11933 249 ENQAVCLWLKETYP 262 (470)
T ss_pred HHHHHHHHHHHHCC
Confidence 55566666656553
No 180
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.91 E-value=1.3e-08 Score=81.64 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..+|+|+|+|.|..+..++ +++..+++..|....++.+++ .++++++.+|+. ... +. +|++++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~----P~--~D~~~l 164 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPL----PV--ADVYLL 164 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCC----SS--ESEEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhh----cc--ccceee
Confidence 345689999999999999986 455579999998667777666 377999999998 332 33 999999
Q ss_pred cccccCC--cchHHHHHHHHHHhcCC--CceEEEE
Q 046623 131 SDVFYDP--EEMVGLGKTLKRVCGTG--RHTVVWA 161 (218)
Q Consensus 131 ~~~~~~~--~~~~~~l~~~~~lL~~g--G~~~i~~ 161 (218)
..++|+. ++...+++++++.|+|| |+++|+-
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 9999875 45788999999999998 9666553
No 181
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.91 E-value=1.5e-08 Score=78.23 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=80.2
Q ss_pred eEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc----ccCCCCcEEE
Q 046623 56 SVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL----SELGEFDMVI 129 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~D~Iv 129 (218)
+|||||||||-.+..+++. +.....-.|.++ ....+...+...+.++...-+.+|+......-. ...++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 6999999999999998754 445666788888 778888888888776655666777766533111 1346899999
Q ss_pred EcccccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+.+++|-. ...+.+++.+.++|++||.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 99998853 56788999999999999955544
No 182
>PRK01581 speE spermidine synthase; Validated
Probab=98.91 E-value=2.6e-08 Score=83.40 Aligned_cols=133 Identities=19% Similarity=0.077 Sum_probs=84.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHH-----HhCC-CCceEEEEeecCCCCccccccCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVE-----ANGL-GGRVEVRELVWGSDDLSQLSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~-----~~~~-~~~~~~~~~d~~~~~~~~~~~~~ 123 (218)
..+++||++|||.|.....+.+.+ ..+++++|+++ +++.|+.... .... .++++++.+|..+... ...+
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCC
Confidence 456799999999999888887764 46999999999 9999886311 1111 3578888877664322 1346
Q ss_pred CCcEEEEcccccCC-----cchHHHHHHHHHHhcCCCceEEEEEeeccC-ChHHHHHHHHHhCCcEEEEE
Q 046623 124 EFDMVIMSDVFYDP-----EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT-RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~-----~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~-~~~~~~~~~~~~~gf~~~~~ 187 (218)
+||+|+++.+-... --..++++.+.+.|+|||.+++........ .....+...+++.++.....
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 89999985321100 112678999999999999433332211110 01011233337777776554
No 183
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.89 E-value=5.7e-09 Score=81.27 Aligned_cols=133 Identities=16% Similarity=0.105 Sum_probs=98.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC-CCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG-LGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.+|||-..|-|..++.+.+.|+.+|+.+|.++ .++.|+-|==..+ ....++++.+|..+.-. ...+++||.|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~--~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK--DFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh--cCCccccceEe
Confidence 36889999999999999999999999999999999 8888765531111 12346788777654321 12567899999
Q ss_pred EcccccCCc---chHHHHHHHHHHhcCCCceEEEEEeecc-----CChHHHHHHHHHhCCcEEEEE
Q 046623 130 MSDVFYDPE---EMVGLGKTLKRVCGTGRHTVVWAVSEVR-----TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 130 ~~~~~~~~~---~~~~~l~~~~~lL~~gG~~~i~~~~~~~-----~~~~~~~~~~~~~~gf~~~~~ 187 (218)
-.+|-++.+ -.+.+-+++.++|+|||+++-++..+.. +......+.+ ++.||...+.
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RL-r~vGF~~v~~ 275 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERL-RRVGFEVVKK 275 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHH-HhcCceeeee
Confidence 877765432 2477889999999999988888776642 2355555666 8999996554
No 184
>PLN02366 spermidine synthase
Probab=98.87 E-value=4.2e-08 Score=81.22 Aligned_cols=103 Identities=15% Similarity=0.039 Sum_probs=74.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhC--C-CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANG--L-GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.++++||++|||.|.....+++.+ ..+++.+|+++ .++.+++.+...+ . .++++++.+|....... .+.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~--~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN--APEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh--ccCCCCC
Confidence 356799999999999999998775 36899999999 9999999886532 2 35789998885432210 0246799
Q ss_pred EEEEcccccCCc----chHHHHHHHHHHhcCCCc
Q 046623 127 MVIMSDVFYDPE----EMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 127 ~Iv~~~~~~~~~----~~~~~l~~~~~lL~~gG~ 156 (218)
+|++...-.... -...+++.+.++|+|||.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGv 201 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGV 201 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence 999843211111 135789999999999993
No 185
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.86 E-value=1.6e-08 Score=82.66 Aligned_cols=76 Identities=21% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+|||+|||+|.++..+++.+. +++++|+++ +++.+++++.. .+++++.+|+.+.... .-..|.|++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~----~~~~~~vv~ 111 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS----ELQPLKVVA 111 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH----HcCcceEEE
Confidence 5678999999999999999988866 999999999 99999887643 4589999998876531 111589999
Q ss_pred cccccC
Q 046623 131 SDVFYD 136 (218)
Q Consensus 131 ~~~~~~ 136 (218)
|.|++.
T Consensus 112 NlPY~i 117 (272)
T PRK00274 112 NLPYNI 117 (272)
T ss_pred eCCccc
Confidence 888654
No 186
>PRK04148 hypothetical protein; Provisional
Probab=98.86 E-value=3.8e-08 Score=71.20 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=67.6
Q ss_pred HHHHHhc-CCCCCCCeEEEECCCCCH-HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 42 LAQFIST-HFDFQNKSVLELGAGAGL-PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 42 l~~~l~~-~~~~~~~~vLDlG~G~G~-~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
+++++.. .+..++.++||+|||+|. ++..+++.|. .|+++|+++ +++.++++. ++++..|+.+....
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~- 73 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLE- 73 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHH-
Confidence 4555544 233456799999999996 8888888876 999999999 988886652 68888898876642
Q ss_pred cccCCCCcEEEEcccccCCcchHHHHHHHHHHh
Q 046623 119 LSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVC 151 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL 151 (218)
.-..+|+|.+..|. .++...+..+++-+
T Consensus 74 --~y~~a~liysirpp---~el~~~~~~la~~~ 101 (134)
T PRK04148 74 --IYKNAKLIYSIRPP---RDLQPFILELAKKI 101 (134)
T ss_pred --HHhcCCEEEEeCCC---HHHHHHHHHHHHHc
Confidence 23679999986652 34444444444433
No 187
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.85 E-value=4.8e-09 Score=78.53 Aligned_cols=79 Identities=23% Similarity=0.181 Sum_probs=57.6
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
..|+|+.||.|.-++.+|+... +|+++|+++ .++.++.|++..|+.++++++.+|+.+...... ....+|+|+++||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~-~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK-SNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc-ccccccEEEECCC
Confidence 3799999999999999999854 999999999 999999999999998899999999877543211 1112899999998
Q ss_pred cc
Q 046623 134 FY 135 (218)
Q Consensus 134 ~~ 135 (218)
..
T Consensus 79 WG 80 (163)
T PF09445_consen 79 WG 80 (163)
T ss_dssp BS
T ss_pred CC
Confidence 75
No 188
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.84 E-value=3e-08 Score=80.43 Aligned_cols=76 Identities=29% Similarity=0.294 Sum_probs=62.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..++.+|||+|||+|.++..+++.+ .+++++|+++ +++.+++++... .+++++.+|+..... ..+|.|+
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~------~~~d~Vv 96 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL------PEFNKVV 96 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc------hhceEEE
Confidence 3567899999999999999998875 4899999999 999998887542 458999998876532 3479999
Q ss_pred EcccccC
Q 046623 130 MSDVFYD 136 (218)
Q Consensus 130 ~~~~~~~ 136 (218)
+|.|++.
T Consensus 97 ~NlPy~i 103 (258)
T PRK14896 97 SNLPYQI 103 (258)
T ss_pred EcCCccc
Confidence 9888764
No 189
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.83 E-value=3.7e-08 Score=73.01 Aligned_cols=121 Identities=18% Similarity=0.093 Sum_probs=90.7
Q ss_pred hhHHHHHHHHhcC-CCCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 37 DSALILAQFISTH-FDFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 37 ~~~~~l~~~l~~~-~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
+++..+++.|... ....+..|||+|.|+|.++..+.+.|. ..++++|.++ +...+.+.. +.++++.+|..
T Consensus 31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~ 104 (194)
T COG3963 31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAF 104 (194)
T ss_pred CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchh
Confidence 5667777777663 235677999999999999999987765 4899999999 888877665 44678888877
Q ss_pred CCCccc-cccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEe
Q 046623 113 SDDLSQ-LSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 113 ~~~~~~-~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
+..... ......||.|++.-|+-+. ....++++.+...|.+||.++.+.+.
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 655211 1245679999998777653 45678999999999999966655554
No 190
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=5.8e-08 Score=76.10 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=71.6
Q ss_pred CCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCC--------------------------
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLG-------------------------- 101 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~-------------------------- 101 (218)
+.+.+..+|||||.+|.+++.++ ..++..+.|+|+++ .++.|+++++...-.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 34678899999999999999997 45778999999999 999999998654210
Q ss_pred --------CceEEEEeec--CCCCccccccCCCCcEEEEccccc------CCcchHHHHHHHHHHhcCCC
Q 046623 102 --------GRVEVRELVW--GSDDLSQLSELGEFDMVIMSDVFY------DPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 102 --------~~~~~~~~d~--~~~~~~~~~~~~~~D~Iv~~~~~~------~~~~~~~~l~~~~~lL~~gG 155 (218)
+++.+..... +....- ......||+|+|-.+.- +.+-+..++..+.++|.|||
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred ccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 0011110000 000000 11446899999855431 23558899999999999999
No 191
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=3.1e-09 Score=85.29 Aligned_cols=130 Identities=26% Similarity=0.327 Sum_probs=92.0
Q ss_pred CcCCCCccccccccccchhHHHHHHHHhcC---C-CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHH-HHHH
Q 046623 20 NVCDSVTGRPLTGAWLWDSALILAQFISTH---F-DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLP-GLIN 93 (218)
Q Consensus 20 ~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~---~-~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~-~a~~ 93 (218)
+.+|..++-|+.|++.|+++..+..++.+. . ...+++|||+|||+|..++.+...+...++..|.|. .++ ....
T Consensus 79 ~~sDl~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~p 158 (282)
T KOG2920|consen 79 NHSDLVPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLP 158 (282)
T ss_pred cccccCCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeeccc
Confidence 678999999999999999999999998853 1 267899999999999999999888767888888887 552 1112
Q ss_pred HHHHhCC--------CCceEEEEe---ecCCCCccccccCC--CCcEEEEcccccCCcchHHH-HHHHHHHhcCCC
Q 046623 94 NVEANGL--------GGRVEVREL---VWGSDDLSQLSELG--EFDMVIMSDVFYDPEEMVGL-GKTLKRVCGTGR 155 (218)
Q Consensus 94 ~~~~~~~--------~~~~~~~~~---d~~~~~~~~~~~~~--~~D~Iv~~~~~~~~~~~~~~-l~~~~~lL~~gG 155 (218)
|+..+.. ..-..+..- ||.- ...+ .||+|.++..+|.......+ ......+++++|
T Consensus 159 n~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~------~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~ 228 (282)
T KOG2920|consen 159 NILVNSHAGVEEKENHKVDEILNSLLSDGVF------NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDG 228 (282)
T ss_pred ceecchhhhhhhhhcccceeccccccccchh------hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccc
Confidence 2111110 000111111 2211 1233 89999999999998777777 666677888888
No 192
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.75 E-value=3.3e-07 Score=84.14 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=86.9
Q ss_pred cchhHHHHHHHHhcCC--CCCCCeEEEECCCCCHHHHHHHHhC-------------------------------------
Q 046623 35 LWDSALILAQFISTHF--DFQNKSVLELGAGAGLPGLTAARLG------------------------------------- 75 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~--~~~~~~vLDlG~G~G~~~~~l~~~~------------------------------------- 75 (218)
..+--..|+..+.... ..++..++|.+||+|++.+.++...
T Consensus 170 ~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 170 EAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 3344445666555422 2357899999999999999886421
Q ss_pred ------CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC----cchHHHH
Q 046623 76 ------ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----EEMVGLG 144 (218)
Q Consensus 76 ------~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~~~~~~l 144 (218)
..+++++|+++ +++.|+.|+..+++.+.+++..+|+.+.... ...+++|+|++|+|+... .+...+.
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~--~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP--LPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc--cccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 12689999999 9999999999999988899999988765421 023579999999998643 2334454
Q ss_pred HHHHHHhc---CCCceEEEE
Q 046623 145 KTLKRVCG---TGRHTVVWA 161 (218)
Q Consensus 145 ~~~~~lL~---~gG~~~i~~ 161 (218)
..+.+.++ +|+...+++
T Consensus 328 ~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 328 SQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHhCCCCeEEEEe
Confidence 55544544 677444443
No 193
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.75 E-value=3.3e-07 Score=70.77 Aligned_cols=142 Identities=13% Similarity=0.169 Sum_probs=83.7
Q ss_pred cchhHH--HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 35 LWDSAL--ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 35 ~w~~~~--~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
.|+... .+.+++.+. .++..|.|+|||.+.++..+. .+ ..|+..|.-. .+-.+..+|+.
T Consensus 54 ~WP~nPvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~-~~V~SfDLva---------------~n~~Vtacdia 114 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NK-HKVHSFDLVA---------------PNPRVTACDIA 114 (219)
T ss_dssp TSSS-HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS----------------SSTTEEES-TT
T ss_pred cCCCCcHHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cC-ceEEEeeccC---------------CCCCEEEecCc
Confidence 466543 455666542 345699999999999886553 12 3699999632 11346778887
Q ss_pred CCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-CChHHHHHHHHHhCCcEEEEEEccC
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-TRTGDCLHELIMSQGFRVIELTCQL 191 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-~~~~~~~~~~~~~~gf~~~~~~~~~ 191 (218)
..+. +.+++|++|+.-.+- ..+...++.++.|+||+||.+.|. ....| .....+.+.+ ...||......
T Consensus 115 ~vPL----~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IA-EV~SRf~~~~~F~~~~-~~~GF~~~~~d--- 184 (219)
T PF05148_consen 115 NVPL----EDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIA-EVKSRFENVKQFIKAL-KKLGFKLKSKD--- 184 (219)
T ss_dssp S-S------TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEE-EEGGG-S-HHHHHHHH-HCTTEEEEEEE---
T ss_pred cCcC----CCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEE-EecccCcCHHHHHHHH-HHCCCeEEecc---
Confidence 7766 778999999754442 367899999999999999943333 33334 3465666665 99999998753
Q ss_pred CCCCCCceeEEEecCC
Q 046623 192 GGGCPEAFAVYELIPP 207 (218)
Q Consensus 192 ~~~~~~~~~l~~~~~~ 207 (218)
.....+.++.|.+.
T Consensus 185 --~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 185 --ESNKHFVLFEFKKI 198 (219)
T ss_dssp ----STTEEEEEEEE-
T ss_pred --cCCCeEEEEEEEEc
Confidence 22357888888665
No 194
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.73 E-value=2.4e-07 Score=74.92 Aligned_cols=77 Identities=23% Similarity=0.205 Sum_probs=60.0
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCc-
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFD- 126 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D- 126 (218)
....++.+|||+|||+|.++..+++.+. +++++|+++ +++.++.++.. ..+++++.+|+..... ..+|
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~------~~~d~ 94 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL------PDFPK 94 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh------hHcCC
Confidence 3335678999999999999999988765 799999999 99998877643 2458889888876543 1355
Q ss_pred --EEEEccccc
Q 046623 127 --MVIMSDVFY 135 (218)
Q Consensus 127 --~Iv~~~~~~ 135 (218)
.|++|.|++
T Consensus 95 ~~~vvsNlPy~ 105 (253)
T TIGR00755 95 QLKVVSNLPYN 105 (253)
T ss_pred cceEEEcCChh
Confidence 888877754
No 195
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.73 E-value=1.6e-07 Score=78.16 Aligned_cols=154 Identities=12% Similarity=0.103 Sum_probs=89.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHH--------hCCCeEEEecCcc-hHHHHHHHHHHhCCCCc-eEEEEeecCCCCcccccc
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR--------LGATRVVLTDVKP-LLPGLINNVEANGLGGR-VEVRELVWGSDDLSQLSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~--------~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~ 121 (218)
.++.+|+|.+||+|.+...+.+ ....+++|+|+++ ++..++-|+...+.... ..+...|....... ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~--~~ 122 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF--IK 122 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC--TS
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc--cc
Confidence 4566899999999999888754 2445899999999 99999988877765432 34666665433221 02
Q ss_pred CCCCcEEEEcccccCC--c-------------------chHHHHHHHHHHhcCCCceEEEEEeec--cCChHHHHHHHHH
Q 046623 122 LGEFDMVIMSDVFYDP--E-------------------EMVGLGKTLKRVCGTGRHTVVWAVSEV--RTRTGDCLHELIM 178 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~~--~-------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~--~~~~~~~~~~~~~ 178 (218)
...||+|++|+|+... . .-..++..+.+.|+++|++.+++.... .......++..+.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll 202 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLL 202 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHH
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHH
Confidence 4689999999998543 0 012477888999999997777766543 2333344444433
Q ss_pred hC-CcEE-EEEEccCCCCCCCceeEEEecCC
Q 046623 179 SQ-GFRV-IELTCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 179 ~~-gf~~-~~~~~~~~~~~~~~~~l~~~~~~ 207 (218)
+. .... +..|-...........++-+.+.
T Consensus 203 ~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 203 ENGYIEAVISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp HHEEEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred hhchhhEEeecccceecccCcCceEEEEeec
Confidence 33 3222 22354444444444455555433
No 196
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.5e-06 Score=73.09 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC---------------------------------C-------eEEEecCcc-hHHH
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA---------------------------------T-------RVVLTDVKP-LLPG 90 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~---------------------------------~-------~v~~~D~~~-~~~~ 90 (218)
.++..++|.-||+|++.+.+|..+. . .++++|+++ +++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4557999999999999999876542 0 377999999 9999
Q ss_pred HHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC----c----chHHHHHHHHHHhcCCCceEEEEE
Q 046623 91 LINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----E----EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----~----~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
|+.|++..|+.+.++|..+|..+... +.+.+|+||+|+|+... . .+..+.+.+.+.++.-+ ..++++
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~----~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws-~~v~tt 344 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE----PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWS-RYVFTT 344 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC----CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCc-eEEEEc
Confidence 99999999999999999999877653 33789999999998642 1 23344455555565544 455544
No 197
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.70 E-value=7.8e-09 Score=79.76 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=85.9
Q ss_pred ccchhHHHHHHHHhc--CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 34 WLWDSALILAQFIST--HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~--~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
|.|-+...++..+.. ........|+|..||.|.-.+..+..++ .|+++|++| -+..|+.|++..|++++++|+.+|
T Consensus 73 wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 73 WFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred eEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence 445555555555544 1112556899999999999998888876 899999999 999999999999999999999999
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcC
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGT 153 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~ 153 (218)
+.+...........+|+++.+++...+.-...-+-.+...+.|
T Consensus 152 ~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p 194 (263)
T KOG2730|consen 152 FLDLASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKP 194 (263)
T ss_pred HHHHHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcch
Confidence 9876533333456688999998886554333333333333333
No 198
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.70 E-value=1e-07 Score=71.69 Aligned_cols=77 Identities=17% Similarity=0.017 Sum_probs=62.6
Q ss_pred EEecCcc-hHHHHHHHHHHhC--CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCc
Q 046623 80 VLTDVKP-LLPGLINNVEANG--LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 80 ~~~D~~~-~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
+|+|+|+ +++.|+++.+..+ ...+++++.+|..+.+. +.++||+|++...+++..+...+++++.++|||||.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeE
Confidence 4799999 9999987664322 22458999999877654 567899999999999889999999999999999996
Q ss_pred eEEE
Q 046623 157 TVVW 160 (218)
Q Consensus 157 ~~i~ 160 (218)
++++
T Consensus 77 l~i~ 80 (160)
T PLN02232 77 VSIL 80 (160)
T ss_pred EEEE
Confidence 5555
No 199
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=2e-06 Score=72.84 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=102.4
Q ss_pred cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC---CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 35 LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA---TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 35 ~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
+.+.+..+...+.. ..++.+|||+.++.|.=+.+++.... ..|+++|.++ -+..++.|+++.|+.+ +.+...|
T Consensus 140 vQd~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d 216 (355)
T COG0144 140 VQDEASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKD 216 (355)
T ss_pred EcCHHHHHHHHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecc
Confidence 34544444444333 35778999999999987777765432 3579999999 9999999999999876 6666665
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCc----------------------chHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPE----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
...... .....++||.|++..|+.... ...+++..+.++|||||.++.-+++-....
T Consensus 217 ~~~~~~-~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eE 295 (355)
T COG0144 217 ARRLAE-LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEE 295 (355)
T ss_pred cccccc-cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhc
Confidence 443221 111223699999988875431 256789999999999996555566555556
Q ss_pred hHHHHHHHHHhC-CcEEEEE
Q 046623 169 TGDCLHELIMSQ-GFRVIEL 187 (218)
Q Consensus 169 ~~~~~~~~~~~~-gf~~~~~ 187 (218)
-++.+..++.+. +|.....
T Consensus 296 NE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 296 NEEVVERFLERHPDFELEPV 315 (355)
T ss_pred CHHHHHHHHHhCCCceeecc
Confidence 666676765544 6666555
No 200
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.68 E-value=7.6e-08 Score=74.83 Aligned_cols=129 Identities=19% Similarity=0.154 Sum_probs=84.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+..+.||.|||-|-.+..+...-..+|-.+|..+ +++.|++.+.... ....++....+++..+ ...+||+|++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P----~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTP----EEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG--------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccC----CCCcEeEEEeh
Confidence 4568999999999999877433357999999999 9999987764421 1224555555444433 34799999997
Q ss_pred ccccCC--cchHHHHHHHHHHhcCCCceEEEE---Eeecc----------CChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDP--EEMVGLGKTLKRVCGTGRHTVVWA---VSEVR----------TRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~---~~~~~----------~~~~~~~~~~~~~~gf~~~~~ 187 (218)
=++.|. ++..++++++.+.|+|+| ++++- +.... ....+.+..++++.|+.+...
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G-~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNG-VIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEE-EEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCc-EEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 777664 678999999999999999 33331 11111 125677888889999999886
No 201
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.65 E-value=2.4e-07 Score=73.89 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=76.7
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
|-|+-.-...+...+...+..+++.|||+|.|+|.++..+.+.+. +|+++|+++ ++....+.....-.++..+++.+|
T Consensus 37 GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD 115 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGD 115 (315)
T ss_pred chhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecc
Confidence 445555555555666656667888999999999999999998876 999999999 988888887666555778999999
Q ss_pred cCCCCccccccCCCCcEEEEccccc
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFY 135 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~ 135 (218)
+...+. ..||.+++|-|+.
T Consensus 116 ~lK~d~------P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 116 FLKTDL------PRFDGCVSNLPYQ 134 (315)
T ss_pred cccCCC------cccceeeccCCcc
Confidence 876643 5799999987764
No 202
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.64 E-value=3.6e-07 Score=72.35 Aligned_cols=118 Identities=15% Similarity=0.071 Sum_probs=86.6
Q ss_pred CeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc-
Q 046623 55 KSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS- 131 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~- 131 (218)
..+||||||.|.+.+.+|+. +-..++|+|+.. .+..+.+.+.+.++. ++.++..|...... ...+.++.|-|.++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~-~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLD-YLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHH-hcCCCCCeeEEEEEC
Confidence 48999999999999998855 446899999999 999999998888875 58888777654321 22245589988875
Q ss_pred -ccccCC------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHH
Q 046623 132 -DVFYDP------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHEL 176 (218)
Q Consensus 132 -~~~~~~------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~ 176 (218)
||.+.. =-...+++.+.+.|+||| .+...+....+.+..+...
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG--~l~~aTD~~~y~e~~~~~~ 177 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGG--VLHFATDNEEYFEWMMLEV 177 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCC--EEEEEecCHHHHHHHHHHH
Confidence 443211 235789999999999999 7777777666555533333
No 203
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.63 E-value=2.1e-06 Score=70.31 Aligned_cols=84 Identities=29% Similarity=0.405 Sum_probs=49.6
Q ss_pred CCeEEEECCCCC-HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh-CCCCceEEEEeecCCCCccc-cccCCCCcEEE
Q 046623 54 NKSVLELGAGAG-LPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN-GLGGRVEVRELVWGSDDLSQ-LSELGEFDMVI 129 (218)
Q Consensus 54 ~~~vLDlG~G~G-~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~-~~~~~~~D~Iv 129 (218)
..++||||+|.. ...+..++....+.+|+|+++ +++.|++|++.| ++..+++++...-....... ....+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 458999999965 445554443346999999999 999999999999 88888988865322222211 12446899999
Q ss_pred EcccccCC
Q 046623 130 MSDVFYDP 137 (218)
Q Consensus 130 ~~~~~~~~ 137 (218)
||+|||..
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99999864
No 204
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.1e-06 Score=67.45 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=101.6
Q ss_pred ccchhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHH-HHHHHHHhCCCCce-EEEEe
Q 046623 34 WLWDSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPG-LINNVEANGLGGRV-EVREL 109 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~-a~~~~~~~~~~~~~-~~~~~ 109 (218)
++-.++..|...+.. .-+.+++.+||+|+.||.++..+.+.|+++|+++|... .+.. .+.. .++ .....
T Consensus 59 yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d-------~rV~~~E~t 131 (245)
T COG1189 59 YVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND-------PRVIVLERT 131 (245)
T ss_pred ccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC-------CcEEEEecC
Confidence 344677888888877 33478999999999999999999999999999999887 4433 3222 333 33333
Q ss_pred ecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc-------------------CChH
Q 046623 110 VWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR-------------------TRTG 170 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~-------------------~~~~ 170 (218)
++....... ..+..|++++.-.|.+ ...++..+..++++++.++.++-+... ....
T Consensus 132 N~r~l~~~~--~~~~~d~~v~DvSFIS---L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~ 206 (245)
T COG1189 132 NVRYLTPED--FTEKPDLIVIDVSFIS---LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLS 206 (245)
T ss_pred ChhhCCHHH--cccCCCeEEEEeehhh---HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHH
Confidence 333333221 2347899999666543 577888899999999855544332211 1133
Q ss_pred HHHHHHHHhCCcEEEEEE-ccCCCCCCCceeEEEec
Q 046623 171 DCLHELIMSQGFRVIELT-CQLGGGCPEAFAVYELI 205 (218)
Q Consensus 171 ~~~~~~~~~~gf~~~~~~-~~~~~~~~~~~~l~~~~ 205 (218)
+...++ .+.||.+..+. .....++.-...++.+.
T Consensus 207 ~i~~~~-~~~g~~~~gl~~Spi~G~~GNiE~l~~~~ 241 (245)
T COG1189 207 KIENFA-KELGFQVKGLIKSPIKGGKGNIEFLLLLK 241 (245)
T ss_pred HHHHHH-hhcCcEEeeeEccCccCCCCcEeeeeeee
Confidence 444444 77899998883 33333333334444443
No 205
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.58 E-value=4.4e-06 Score=65.99 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=92.2
Q ss_pred ccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceE
Q 046623 28 RPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVE 105 (218)
Q Consensus 28 ~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~ 105 (218)
.+.+++..++++..=+.++.+..+..|++||-+|=.- ..|+.++. ..+++++.+|+++ .++...+.+++.|++ ++
T Consensus 19 ~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~ 95 (243)
T PF01861_consen 19 ELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IE 95 (243)
T ss_dssp GGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EE
T ss_pred ccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eE
Confidence 3456777888888888888887778899999999554 34444443 3346999999999 999999999999987 89
Q ss_pred EEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChH--HHHHHHHHhCCcE
Q 046623 106 VRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTG--DCLHELIMSQGFR 183 (218)
Q Consensus 106 ~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~--~~~~~~~~~~gf~ 183 (218)
....|+.+..+.. ..++||+++..|| +-.+-..-++.+....|+..|...++.......... -.++..+.+.||.
T Consensus 96 ~~~~DlR~~LP~~--~~~~fD~f~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 96 AVHYDLRDPLPEE--LRGKFDVFFTDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp EE---TTS---TT--TSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--E
T ss_pred EEEecccccCCHH--HhcCCCEEEeCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcC
Confidence 9999988776432 3589999999555 445667788888888998777555444444322221 2355555799999
Q ss_pred EEEE
Q 046623 184 VIEL 187 (218)
Q Consensus 184 ~~~~ 187 (218)
+..+
T Consensus 173 i~di 176 (243)
T PF01861_consen 173 ITDI 176 (243)
T ss_dssp EEEE
T ss_pred HHHH
Confidence 9887
No 206
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=8.8e-07 Score=69.15 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=85.6
Q ss_pred hHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 38 SALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
.++++.-++.. ...+++||+|.=+|..++..|.. + ..+|+++|+++ +.+....-.+..++...++++.++..+.
T Consensus 61 ~g~fl~~li~~---~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 61 KGQFLQMLIRL---LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred HHHHHHHHHHH---hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh
Confidence 34444444443 56789999999999988887644 2 25999999999 9999988889999988899999887665
Q ss_pred Ccccc--ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 115 DLSQL--SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 115 ~~~~~--~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
..+.. ...++||.++...- -.......+++.+++++||
T Consensus 138 Ld~l~~~~~~~tfDfaFvDad---K~nY~~y~e~~l~Llr~GG 177 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVDAD---KDNYSNYYERLLRLLRVGG 177 (237)
T ss_pred HHHHHhcCCCCceeEEEEccc---hHHHHHHHHHHHhhccccc
Confidence 43322 24679999998422 2445688899999999999
No 207
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=2.9e-06 Score=67.79 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=94.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.+|.+|+|-|+|+|.++.++++. +-.+++..|.-. -.+.+.+-+++.++.+++++..-|........ .+..+|.|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~--ks~~aDaV 181 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI--KSLKADAV 181 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc--cccccceE
Confidence 68999999999999999999765 236999999999 89999999999999999999998887664321 35789999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
++.- +.+...+..+.+.|+.+|..++-.+... +.+....+.+ .+.||.-+.+
T Consensus 182 FLDl-----PaPw~AiPha~~~lk~~g~r~csFSPCI-EQvqrtce~l-~~~gf~~i~~ 233 (314)
T KOG2915|consen 182 FLDL-----PAPWEAIPHAAKILKDEGGRLCSFSPCI-EQVQRTCEAL-RSLGFIEIET 233 (314)
T ss_pred EEcC-----CChhhhhhhhHHHhhhcCceEEeccHHH-HHHHHHHHHH-HhCCCceEEE
Confidence 8833 3445666777789998884444333222 2344444444 7888876554
No 208
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.5e-06 Score=65.23 Aligned_cols=152 Identities=17% Similarity=0.026 Sum_probs=99.0
Q ss_pred hhHHHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecC
Q 046623 37 DSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWG 112 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~ 112 (218)
.+++.|.+...+... .++.+|+||||..|.++..+++... ..|+++|+.| ... ..+.++.+|+.
T Consensus 28 RAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~------------~~V~~iq~d~~ 95 (205)
T COG0293 28 RAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI------------PGVIFLQGDIT 95 (205)
T ss_pred hHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC------------CCceEEeeecc
Confidence 355667777666433 4678999999999999999976533 3599999988 331 23889999988
Q ss_pred CCCcccc----ccCCCCcEEEEcccc---cCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHH
Q 046623 113 SDDLSQL----SELGEFDMVIMSDVF---YDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELI 177 (218)
Q Consensus 113 ~~~~~~~----~~~~~~D~Iv~~~~~---~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~ 177 (218)
.....+. ....++|+|++.... .+. ......++.+...|+|+|.+++-.... ...++.+..+
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg--~~~~~~l~~~- 172 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG--EDFEDLLKAL- 172 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC--CCHHHHHHHH-
Confidence 7653221 133457999963221 111 123455666677999999555444433 5566777776
Q ss_pred HhCCcEEEEE--EccCCCCCCCceeEEEe
Q 046623 178 MSQGFRVIEL--TCQLGGGCPEAFAVYEL 204 (218)
Q Consensus 178 ~~~gf~~~~~--~~~~~~~~~~~~~l~~~ 204 (218)
...|...++ |...+....+.+.+...
T Consensus 173 -~~~F~~v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 173 -RRLFRKVKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred -HHhhceeEEecCccccCCCceEEEEEec
Confidence 567777776 66666666666665443
No 209
>PLN02823 spermine synthase
Probab=98.56 E-value=6.7e-07 Score=74.92 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=73.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhC---CCCceEEEEeecCCCCccccccCCCCcE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANG---LGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..++||.+|+|.|..+..+.+. +..+++.+|+++ .++.+++.+..++ -.++++++..|...... ...++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---KRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---hCCCCccE
Confidence 4679999999999999988775 456899999999 9999998876542 13678888877654431 13468999
Q ss_pred EEEcc--cccCC-c---chHHHHH-HHHHHhcCCCc
Q 046623 128 VIMSD--VFYDP-E---EMVGLGK-TLKRVCGTGRH 156 (218)
Q Consensus 128 Iv~~~--~~~~~-~---~~~~~l~-~~~~lL~~gG~ 156 (218)
|++.. +.... . -..++++ .+.+.|+|||.
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gv 215 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGI 215 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcE
Confidence 99842 11100 0 1356777 88999999993
No 210
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.1e-06 Score=66.08 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=81.3
Q ss_pred hHHHHHHHHhc---CCCCCCCeEEEECCCCCHHHHHHHHh-CC--CeEEEecCcc-hHHHHHHHHHHhCC---------C
Q 046623 38 SALILAQFIST---HFDFQNKSVLELGAGAGLPGLTAARL-GA--TRVVLTDVKP-LLPGLINNVEANGL---------G 101 (218)
Q Consensus 38 ~~~~l~~~l~~---~~~~~~~~vLDlG~G~G~~~~~l~~~-~~--~~v~~~D~~~-~~~~a~~~~~~~~~---------~ 101 (218)
++..+-..+.+ .+..++..+||+|+|+|.++..+++. ++ ...+++|.=+ .++.+++|+...-. .
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 44444444433 22468899999999999998887633 33 2449999888 99999999876531 2
Q ss_pred CceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 102 GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 102 ~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.++.++.+|...... +..+||.|.+. +...++.+.+...|++||++++-..
T Consensus 144 ~~l~ivvGDgr~g~~----e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYA----EQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CceEEEeCCccccCC----ccCCcceEEEc------cCccccHHHHHHhhccCCeEEEeec
Confidence 457788877665544 67899999986 3345666777778899996666544
No 211
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.54 E-value=4.9e-06 Score=74.18 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=56.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC---------CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-ccc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG---------ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-LSE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~---------~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~ 121 (218)
...+|||.+||+|.+...++... ..+++++|+++ ++..++.++...+. ....+...|........ ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45689999999999988875321 14789999999 99999999876651 12344444432221100 012
Q ss_pred CCCCcEEEEcccccC
Q 046623 122 LGEFDMVIMSDVFYD 136 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~~ 136 (218)
.+.||+|+.|||+..
T Consensus 110 ~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 110 LDLFDIVITNPPYGR 124 (524)
T ss_pred cCcccEEEeCCCccc
Confidence 358999999999864
No 212
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.53 E-value=2.4e-06 Score=67.83 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=85.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
....|.|+|||-+-++. . -...|++.|.-. .+-.++.+|+.+.+. .+++.|+++..-
T Consensus 180 ~~~vIaD~GCGEakiA~---~-~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl----~d~svDvaV~CL 236 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---S-ERHKVHSFDLVA---------------VNERVIACDMRNVPL----EDESVDVAVFCL 236 (325)
T ss_pred CceEEEecccchhhhhh---c-cccceeeeeeec---------------CCCceeeccccCCcC----ccCcccEEEeeH
Confidence 45689999999977655 2 223788888521 225677888888766 778999999743
Q ss_pred cccCCcchHHHHHHHHHHhcCCCceEEEEEe-ecc-CChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecCCc
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS-EVR-TRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIPPM 208 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~-~~~-~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (218)
.+ ...++..++.++.|+|++|| .++++- ..| .....+.+.+ ...||...+..... ..+.++.|.++.
T Consensus 237 SL-Mgtn~~df~kEa~RiLk~gG--~l~IAEv~SRf~dv~~f~r~l-~~lGF~~~~~d~~n-----~~F~lfefkK~~ 305 (325)
T KOG3045|consen 237 SL-MGTNLADFIKEANRILKPGG--LLYIAEVKSRFSDVKGFVRAL-TKLGFDVKHKDVSN-----KYFTLFEFKKTP 305 (325)
T ss_pred hh-hcccHHHHHHHHHHHhccCc--eEEEEehhhhcccHHHHHHHH-HHcCCeeeehhhhc-----ceEEEEEEecCC
Confidence 33 23678899999999999999 444432 223 3455666666 99999998874332 357777776654
No 213
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.49 E-value=3.9e-07 Score=68.93 Aligned_cols=95 Identities=23% Similarity=0.190 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
..+.+.|+|+|+|.++..++.. +.+|++++.+| ....+.+|+..++.. +++++.+|...... +..|+|+|-
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~f------e~ADvvicE 103 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDF------ENADVVICE 103 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccc------cccceeHHH
Confidence 3468999999999999999887 67999999999 999999998777764 58999988776543 678999972
Q ss_pred --ccccCCcchHHHHHHHHHHhcCCC
Q 046623 132 --DVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 132 --~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+...-.+...+.+..+.+.|+.++
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr~d~ 129 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLRYDP 129 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhhcCC
Confidence 222234667788888888888887
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.7e-06 Score=69.54 Aligned_cols=88 Identities=17% Similarity=0.106 Sum_probs=67.2
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+.+.+......++.+|||||+|.|.++..+++.+. +|+++|+++ .++.+++..... .+++++.+|.........
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l- 93 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSL- 93 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhh-
Confidence 44444443334578999999999999999999876 899999999 888888776522 569999999887765211
Q ss_pred cCCCCcEEEEcccccC
Q 046623 121 ELGEFDMVIMSDVFYD 136 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~ 136 (218)
..++.|++|-|++-
T Consensus 94 --~~~~~vVaNlPY~I 107 (259)
T COG0030 94 --AQPYKVVANLPYNI 107 (259)
T ss_pred --cCCCEEEEcCCCcc
Confidence 16899999888754
No 215
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.44 E-value=5.5e-07 Score=73.74 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=71.4
Q ss_pred CCeEEEECCCCC----HHHHHHHHhC-----CCeEEEecCcc-hHHHHHHHHH------------------H-----hC-
Q 046623 54 NKSVLELGAGAG----LPGLTAARLG-----ATRVVLTDVKP-LLPGLINNVE------------------A-----NG- 99 (218)
Q Consensus 54 ~~~vLDlG~G~G----~~~~~l~~~~-----~~~v~~~D~~~-~~~~a~~~~~------------------~-----~~- 99 (218)
..+|+..||.+| .+++.+.... ..+|+|+|+|+ +++.|++..- . .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 3444444421 24799999999 9999877620 0 00
Q ss_pred ------CCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCC
Q 046623 100 ------LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 100 ------~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
+...+.|...|+.+... .+.+.||+|+|.+++.+. +....+++.+.+.|+|||
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~---~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG 256 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQW---AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDG 256 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCC---ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 22457788777765332 135789999998887553 568899999999999999
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.42 E-value=3.5e-06 Score=74.57 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=89.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..+||||||.|.+...+|+. +-..++|+|+.. .+..+.......++.+ +.++..|+... ....+.+++|-|++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~--~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLI--LNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHH--HHhcCcccccEEEE
Confidence 3568999999999999998755 446899999999 8877777777777653 66666554311 11225678999987
Q ss_pred cccccCC--------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-CcEEEE
Q 046623 131 SDVFYDP--------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-GFRVIE 186 (218)
Q Consensus 131 ~~~~~~~--------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-gf~~~~ 186 (218)
+.|=-++ =-..++++.+.++|+||| .+.+.+....+....+..+ ... +|....
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG--~i~~~TD~~~y~~~~~~~~-~~~~~f~~~~ 485 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNG--NLVFASDIENYFYEAIELI-QQNGNFEIIN 485 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCC--EEEEEcCCHHHHHHHHHHH-HhCCCeEecc
Confidence 5442221 125789999999999999 6666666666666666665 444 476543
No 217
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.42 E-value=2e-06 Score=70.67 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=115.3
Q ss_pred ccccc-cchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCCceE
Q 046623 30 LTGAW-LWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGGRVE 105 (218)
Q Consensus 30 ~~g~~-~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~ 105 (218)
..|+. +++.+..+...+.. ..++.+|||+.++.|.=+..++.. + ...+++.|+++ -+..++.|+.+.|+.+ +.
T Consensus 63 ~~G~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~ 139 (283)
T PF01189_consen 63 KNGLFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VI 139 (283)
T ss_dssp HTTSEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EE
T ss_pred hCCcEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EE
Confidence 34443 56666555555443 257789999999999988887644 3 36999999999 9999999999998764 55
Q ss_pred EEEeecCCCCccccccCCCCcEEEEcccccCC----------------------cchHHHHHHHHHHh----cCCCceEE
Q 046623 106 VRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----------------------EEMVGLGKTLKRVC----GTGRHTVV 159 (218)
Q Consensus 106 ~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----------------------~~~~~~l~~~~~lL----~~gG~~~i 159 (218)
+...|...... ......||.|++..|+... ....++++.+.+++ +|||.++.
T Consensus 140 ~~~~D~~~~~~--~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvY 217 (283)
T PF01189_consen 140 VINADARKLDP--KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVY 217 (283)
T ss_dssp EEESHHHHHHH--HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEE
T ss_pred EEeeccccccc--cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 55444332211 1133469999998877532 11567889999999 99995555
Q ss_pred EEEeeccCChHHHHHHHHHhC-CcEEEEEEccCCCC-C---CCceeEEEecCCccc-cccccc
Q 046623 160 WAVSEVRTRTGDCLHELIMSQ-GFRVIELTCQLGGG-C---PEAFAVYELIPPMHE-ENFHVA 216 (218)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-gf~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~-~~~~~~ 216 (218)
-+++-....-++.++.++++. .|....++...... . ......+++.|..+. ++|++|
T Consensus 218 sTCS~~~eENE~vV~~fl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGFFiA 280 (283)
T PF01189_consen 218 STCSLSPEENEEVVEKFLKRHPDFELVPIPLPEPPPGFKSYPIGEGCLRILPHRHGTDGFFIA 280 (283)
T ss_dssp EESHHHGGGTHHHHHHHHHHSTSEEEECCESSTCEEESSGGCTGGGSEEESTTTSSSSSEEEE
T ss_pred EeccHHHHHHHHHHHHHHHhCCCcEEEeccccccccccccccCCCCEEEeCCCCCCCCCEEEE
Confidence 455555555666667665554 55555544332221 1 133445666666533 344443
No 218
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.41 E-value=4.5e-06 Score=67.66 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCC----HHHHHHHHhC------CCeEEEecCcc-hHHHHHHHHHH-----hCC----------------
Q 046623 53 QNKSVLELGAGAG----LPGLTAARLG------ATRVVLTDVKP-LLPGLINNVEA-----NGL---------------- 100 (218)
Q Consensus 53 ~~~~vLDlG~G~G----~~~~~l~~~~------~~~v~~~D~~~-~~~~a~~~~~~-----~~~---------------- 100 (218)
..-+|+-.||+|| .+++.+.+.. ..+++++|+|. +++.|+.-.-. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3569999999999 3455554443 24899999999 99888654311 111
Q ss_pred -------CCceEEEEeecCCCCccccccCCCCcEEEEcccccC--CcchHHHHHHHHHHhcCCC
Q 046623 101 -------GGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 101 -------~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG 155 (218)
...|.|...|+....+ ..+.||+|+|.+++-+ .+....+++.....|+|||
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~----~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG 235 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP----FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG 235 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc----ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence 1346666666655543 4577999999998744 4667889999999999999
No 219
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.38 E-value=5.8e-07 Score=68.88 Aligned_cols=150 Identities=18% Similarity=0.140 Sum_probs=83.3
Q ss_pred hhHHHHHHHHhcCC-C-C-CCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeec
Q 046623 37 DSALILAQFISTHF-D-F-QNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVW 111 (218)
Q Consensus 37 ~~~~~l~~~l~~~~-~-~-~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 111 (218)
.+...|.+...... . . ++.+|||+||++|.++..+...+ ..+|+++|+.+.... ..+.++.+|.
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~ 72 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDI 72 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGG
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeeccc
Confidence 45677777777744 2 2 45899999999999999998776 469999999874111 1133334443
Q ss_pred CCCC----cccccc--CCCCcEEEEcccccCC-----------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHH
Q 046623 112 GSDD----LSQLSE--LGEFDMVIMSDVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLH 174 (218)
Q Consensus 112 ~~~~----~~~~~~--~~~~D~Iv~~~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~ 174 (218)
.... ...... ..++|+|++.-..... ......+..+.++|++||.+++-+... ....+++.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~--~~~~~~~~ 150 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG--PEIEELIY 150 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS--TTSHHHHH
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC--ccHHHHHH
Confidence 2221 111111 2689999985422111 223344455567899999544444332 22245555
Q ss_pred HHHHhCCcEEEEE--EccCCCCCCCceeE
Q 046623 175 ELIMSQGFRVIEL--TCQLGGGCPEAFAV 201 (218)
Q Consensus 175 ~~~~~~gf~~~~~--~~~~~~~~~~~~~l 201 (218)
.+ +..|....+ |...++...+++.+
T Consensus 151 ~l--~~~F~~v~~~Kp~~sr~~s~E~Ylv 177 (181)
T PF01728_consen 151 LL--KRCFSKVKIVKPPSSRSESSEEYLV 177 (181)
T ss_dssp HH--HHHHHHEEEEE-TTSBTTCBEEEEE
T ss_pred HH--HhCCeEEEEEECcCCCCCccEEEEE
Confidence 55 346665555 55555555554443
No 220
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=2.9e-06 Score=73.28 Aligned_cols=123 Identities=20% Similarity=0.145 Sum_probs=82.0
Q ss_pred hhHHHHHHHHhc-CCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 37 DSALILAQFIST-HFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 37 ~~~~~l~~~l~~-~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
..+..|..++.. .....++.++|+.||||.+++.+++. ..+|+++++++ +++-|+.|+..|++++ .+|+.+-.++.
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~ 443 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhc
Confidence 445566666655 33356689999999999999999875 66999999999 9999999999999985 88998733333
Q ss_pred Cccccc-cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 115 DLSQLS-ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 115 ~~~~~~-~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
-..... ..++=+++...+|.. ...-..+++.+++.-++- .+++++..
T Consensus 444 ~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~--rlvyvSCn 491 (534)
T KOG2187|consen 444 FPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPR--RLVYVSCN 491 (534)
T ss_pred cchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCcc--ceEEEEcC
Confidence 221111 123456444445532 233455666666555553 45555444
No 221
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.37 E-value=1.3e-06 Score=68.27 Aligned_cols=113 Identities=20% Similarity=0.260 Sum_probs=62.2
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHH-------HhCC-CCceEEEEee
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVE-------ANGL-GGRVEVRELV 110 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~-------~~~~-~~~~~~~~~d 110 (218)
.+...+......+++.++|||||.|.....++ ..+..+++|+|+.+ ....++...+ ..+. ...+++..+|
T Consensus 30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 34444444434567899999999999888775 66777799999999 7666654332 2232 2457777888
Q ss_pred cCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 111 WGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+.+...... .-...|+|++|+.++..+...++ .....-||+|.
T Consensus 110 fl~~~~~~~-~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~ 152 (205)
T PF08123_consen 110 FLDPDFVKD-IWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGA 152 (205)
T ss_dssp TTTHHHHHH-HGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-
T ss_pred ccccHhHhh-hhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCC
Confidence 765432110 12468999999888764444444 55555677765
No 222
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.35 E-value=5.4e-07 Score=69.91 Aligned_cols=99 Identities=23% Similarity=0.337 Sum_probs=62.4
Q ss_pred CCCeEEEECCCCC----HHHHHHHHh--C-C---CeEEEecCcc-hHHHHHHHHH-H---hC------------------
Q 046623 53 QNKSVLELGAGAG----LPGLTAARL--G-A---TRVVLTDVKP-LLPGLINNVE-A---NG------------------ 99 (218)
Q Consensus 53 ~~~~vLDlG~G~G----~~~~~l~~~--~-~---~~v~~~D~~~-~~~~a~~~~~-~---~~------------------ 99 (218)
+..+|+-.||++| .+++.+... + . .+++++|+|+ +++.|++-.- . .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 344444441 1 1 3899999999 9998865320 0 01
Q ss_pred -----CCCceEEEEeecCCCCccccccCCCCcEEEEcccccC--CcchHHHHHHHHHHhcCCC
Q 046623 100 -----LGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD--PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 100 -----~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG 155 (218)
+...+.|...|+.+... ..+.||+|+|.+++.+ .+....+++.+.+.|+|||
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~----~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG 169 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP----PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGG 169 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S----------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEE
T ss_pred eEChHHcCceEEEecccCCCCc----ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCC
Confidence 11568888888877222 5678999999998854 4567889999999999999
No 223
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=8.1e-07 Score=69.32 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=74.2
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
...++||||+-|.+...+...+..+++.+|.|. +++.++.. +.+++. .....+|=+..+ ...+++|+|+++-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ld----f~ens~DLiisSl 145 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLD----FKENSVDLIISSL 145 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhccc----ccccchhhhhhhh
Confidence 358999999999999999887888999999999 88876544 233322 233333322222 2678999999999
Q ss_pred cccCCcchHHHHHHHHHHhcCCC
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.+|+..++...+..+...|||+|
T Consensus 146 slHW~NdLPg~m~~ck~~lKPDg 168 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALKPDG 168 (325)
T ss_pred hhhhhccCchHHHHHHHhcCCCc
Confidence 99999999999999999999999
No 224
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.34 E-value=7.9e-06 Score=63.85 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=78.8
Q ss_pred EEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 57 VLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 57 vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
|+|+||-=|.+++.+.+.+. .+++++|+++ -++.|+++++..++.+++++..+|-..... +.+..|.|+...+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~----~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK----PGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG------GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC----CCCCCCEEEEecCC
Confidence 68999999999999988776 4799999999 999999999999999999999887443321 33447888874441
Q ss_pred cCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEE
Q 046623 135 YDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 135 ~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
. .....+++.....++... .+++.. . ......-+++ .++||.+.+-.
T Consensus 77 G--~lI~~ILe~~~~~~~~~~-~lILqP-~--~~~~~LR~~L-~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 G--ELIIEILEAGPEKLSSAK-RLILQP-N--THAYELRRWL-YENGFEIIDED 123 (205)
T ss_dssp H--HHHHHHHHHTGGGGTT---EEEEEE-S--S-HHHHHHHH-HHTTEEEEEEE
T ss_pred H--HHHHHHHHhhHHHhccCC-eEEEeC-C--CChHHHHHHH-HHCCCEEEEeE
Confidence 1 334555555554444322 344433 3 2344444444 99999998763
No 225
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.33 E-value=1.2e-05 Score=65.69 Aligned_cols=145 Identities=13% Similarity=0.029 Sum_probs=91.7
Q ss_pred CeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhC--C-CCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 55 KSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANG--L-GGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
++||-||.|.|..+..+.+.. ..+++.+|+++ .++.+++.+.... . .++++++..|..+...+ ...+||+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~---~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD---CEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh---CCCcCCEEE
Confidence 699999999999999998876 46999999999 8999988876543 2 26778887665433211 234899999
Q ss_pred EcccccCCc-----chHHHHHHHHHHhcCCCceEEEEEeeccCCh----HHHHHHHHHhCCcEEEEE---EccCCCCCCC
Q 046623 130 MSDVFYDPE-----EMVGLGKTLKRVCGTGRHTVVWAVSEVRTRT----GDCLHELIMSQGFRVIEL---TCQLGGGCPE 197 (218)
Q Consensus 130 ~~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~----~~~~~~~~~~~gf~~~~~---~~~~~~~~~~ 197 (218)
+. +.-... -...+.+.+.++|+++| +++......... ....+.+ ... |..... +++..++...
T Consensus 155 ~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~G--i~v~q~~~~~~~~~~~~~~~~~~-~~v-f~~~~~~~~~ipt~~~g~~ 229 (282)
T COG0421 155 VD-STDPVGPAEALFTEEFYEGCRRALKEDG--IFVAQAGSPFLQDEEIALAYRNV-SRV-FSIVPPYVAPIPTYPSGFW 229 (282)
T ss_pred Ec-CCCCCCcccccCCHHHHHHHHHhcCCCc--EEEEecCCcccchHHHHHHHHHH-Hhh-ccccccceeccceecCCce
Confidence 83 221111 14889999999999999 333332221111 1222222 333 655544 4444444444
Q ss_pred ceeEEEecCC
Q 046623 198 AFAVYELIPP 207 (218)
Q Consensus 198 ~~~l~~~~~~ 207 (218)
.+.+.....+
T Consensus 230 ~f~~~s~~~~ 239 (282)
T COG0421 230 GFIVASFNKA 239 (282)
T ss_pred EEEEeecCCC
Confidence 5666554433
No 226
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=2.3e-05 Score=60.10 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=100.2
Q ss_pred cCCCCccccccc-cccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHH
Q 046623 21 VCDSVTGRPLTG-AWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLI 92 (218)
Q Consensus 21 ~~~~~~~~~~~g-~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~ 92 (218)
||..---.+..+ |..|+.-. .|+..+.+ .+..++.+||-||+.+|+...+++.. +...+.++|.++ ....+.
T Consensus 38 VYGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl 117 (231)
T COG1889 38 VYGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL 117 (231)
T ss_pred ccCceeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH
Confidence 466533233444 77887433 56666555 34468899999999999999888743 445799999999 766665
Q ss_pred HHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEee-------c
Q 046623 93 NNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE-------V 165 (218)
Q Consensus 93 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~-------~ 165 (218)
..++.. .++--+..|......... .-+..|+|+. ++-. +++.+-+..++...|+++|.+++.+-.. .
T Consensus 118 ~~a~~R---~Ni~PIL~DA~~P~~Y~~-~Ve~VDviy~-DVAQ-p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp 191 (231)
T COG1889 118 DVAEKR---PNIIPILEDARKPEKYRH-LVEKVDVIYQ-DVAQ-PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP 191 (231)
T ss_pred HHHHhC---CCceeeecccCCcHHhhh-hcccccEEEE-ecCC-chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence 555443 345556666554432111 3367899987 4422 2445556677788999999544442211 1
Q ss_pred cCChHHHHHHHHHhCCcEEEEE
Q 046623 166 RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 166 ~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.-+.+....+ ++.+|++.++
T Consensus 192 ~~vf~~ev~kL-~~~~f~i~e~ 212 (231)
T COG1889 192 EEVFKDEVEKL-EEGGFEILEV 212 (231)
T ss_pred HHHHHHHHHHH-HhcCceeeEE
Confidence 11234455566 8889998776
No 227
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.31 E-value=2.7e-05 Score=63.13 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=82.2
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..-+||||.||.|---+.+. ..+. .++...|.++ .++..++.++..|+.+.+.|..+|..+..... ......|++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~-~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLA-ALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhh-ccCCCCCEE
Confidence 45689999999997766653 4433 5899999999 99999999999999987899999987754211 134567999
Q ss_pred EEcccccCC---cchHHHHHHHHHHhcCCCceEEEEE
Q 046623 129 IMSDVFYDP---EEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 129 v~~~~~~~~---~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+++-.+..- +.....+..+..++.||| .+|++.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG-~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGG-YLIYTG 249 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCc-EEEEcC
Confidence 987666433 235667888999999999 555544
No 228
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.29 E-value=2.9e-06 Score=68.30 Aligned_cols=106 Identities=14% Similarity=0.027 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCC---CCceEEEEeecCCCCccccccCC-CCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGL---GGRVEVRELVWGSDDLSQLSELG-EFD 126 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~-~~D 126 (218)
++++||=||.|.|.....+.+.. ..+++.+|+++ .++.+++.+..... .++++++..|....... ..+ +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~---~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE---TQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT---SSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh---ccCCccc
Confidence 57899999999999999998775 46999999999 99999888765432 35788888765433221 233 899
Q ss_pred EEEEcccc--cCC--cchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVF--YDP--EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~--~~~--~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+|++...- ... --..++++.+.++|+|+|.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99983221 111 113789999999999999444444
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.26 E-value=0.00043 Score=54.21 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=93.1
Q ss_pred cccccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcc-hHHHHHHHHHHhCCCC
Q 046623 31 TGAWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKP-LLPGLINNVEANGLGG 102 (218)
Q Consensus 31 ~g~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~ 102 (218)
..++.|+--. .|+..+.. .+..++.+||-||+.+|+.-.+++.. + ...|.++|.++ ....+....+.. .
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~ 122 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---P 122 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---T
T ss_pred cceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---C
Confidence 4777887433 56666655 33467889999999999999988743 3 35899999999 776666555443 4
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec----cC---ChHHHHHH
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV----RT---RTGDCLHE 175 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~----~~---~~~~~~~~ 175 (218)
++--+..|......... .-+.+|+|++ ++- .+++.+-++.++...||+||.+++.+-... .. -..+....
T Consensus 123 NIiPIl~DAr~P~~Y~~-lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~ 199 (229)
T PF01269_consen 123 NIIPILEDARHPEKYRM-LVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKK 199 (229)
T ss_dssp TEEEEES-TTSGGGGTT-TS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHH
T ss_pred ceeeeeccCCChHHhhc-ccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHH
Confidence 46666667654432221 3458999998 453 235566677788889999995555543211 11 13444556
Q ss_pred HHHhCCcEEEEE
Q 046623 176 LIMSQGFRVIEL 187 (218)
Q Consensus 176 ~~~~~gf~~~~~ 187 (218)
+ ++.+|++.+.
T Consensus 200 L-~~~~~~~~e~ 210 (229)
T PF01269_consen 200 L-KEEGFKPLEQ 210 (229)
T ss_dssp H-HCTTCEEEEE
T ss_pred H-HHcCCChheE
Confidence 5 7779998776
No 230
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.24 E-value=4.3e-05 Score=59.50 Aligned_cols=134 Identities=17% Similarity=0.135 Sum_probs=90.5
Q ss_pred hhHHHHHHHHhcCCC-----CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeec
Q 046623 37 DSALILAQFISTHFD-----FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVW 111 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~-----~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~ 111 (218)
|++..+.+|+..... ....++||+||=+.... +...+.-.|+.+|.+++- ..+...|+
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~---------------~~I~qqDF 92 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQH---------------PGILQQDF 92 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCCC---------------CCceeecc
Confidence 788999999877221 12369999999643322 223344579999987521 22344444
Q ss_pred CCCCccccccCCCCcEEEEcccccCCc---chHHHHHHHHHHhcCCCc-----eEEEEE----eeccCChHHHHHHHHHh
Q 046623 112 GSDDLSQLSELGEFDMVIMSDVFYDPE---EMVGLGKTLKRVCGTGRH-----TVVWAV----SEVRTRTGDCLHELIMS 179 (218)
Q Consensus 112 ~~~~~~~~~~~~~~D~Iv~~~~~~~~~---~~~~~l~~~~~lL~~gG~-----~~i~~~----~~~~~~~~~~~~~~~~~ 179 (218)
-+.+... .+.++||+|.++-++...+ ..-+++..+.+.|+|+|. +++++. ...|....+.+..+|..
T Consensus 93 m~rplp~-~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~ 171 (219)
T PF11968_consen 93 MERPLPK-NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMES 171 (219)
T ss_pred ccCCCCC-CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHh
Confidence 4433211 1467899999988886644 467799999999999996 555532 23466677888888899
Q ss_pred CCcEEEEEE
Q 046623 180 QGFRVIELT 188 (218)
Q Consensus 180 ~gf~~~~~~ 188 (218)
.||...+..
T Consensus 172 LGf~~~~~~ 180 (219)
T PF11968_consen 172 LGFTRVKYK 180 (219)
T ss_pred CCcEEEEEE
Confidence 999988873
No 231
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.23 E-value=1.6e-05 Score=66.07 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=72.7
Q ss_pred hhHHHHHHHHhcCC--------CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEE
Q 046623 37 DSALILAQFISTHF--------DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 37 ~~~~~l~~~l~~~~--------~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
.++..|.+.+.... ..++.++|||||++|.++..+.+.|. +|+++|..++......+ .++.+..
T Consensus 187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~~~-------~~V~h~~ 258 (357)
T PRK11760 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLMDT-------GQVEHLR 258 (357)
T ss_pred hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhhCC-------CCEEEEe
Confidence 46666666654411 25788999999999999999999988 99999977643333221 5587877
Q ss_pred eecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCC
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG 154 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g 154 (218)
.|-..... ....+|.+++.-+ ..+..+.+.+.+++..|
T Consensus 259 ~d~fr~~p----~~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 259 ADGFKFRP----PRKNVDWLVCDMV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred ccCcccCC----CCCCCCEEEEecc----cCHHHHHHHHHHHHhcC
Confidence 76554432 2578999999433 45677778888888765
No 232
>PRK00536 speE spermidine synthase; Provisional
Probab=98.20 E-value=4.2e-05 Score=61.90 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=68.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhC---CCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANG---LGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
...++||=+|.|-|.....+.+... +|+.+|+++ .++.+++.+.... -.++++++. +... ...++||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~-----~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLD-----LDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhh-----ccCCcCCE
Confidence 4568999999999999999999875 999999999 9988888554321 125566654 1110 02368999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|++. ..+ ...+.+.+.+.|+|||
T Consensus 143 IIvD-s~~----~~~fy~~~~~~L~~~G 165 (262)
T PRK00536 143 IICL-QEP----DIHKIDGLKRMLKEDG 165 (262)
T ss_pred EEEc-CCC----ChHHHHHHHHhcCCCc
Confidence 9984 322 2678899999999999
No 233
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.18 E-value=3.5e-06 Score=67.79 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=85.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC---------------------------C
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG---------------------------G 102 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~---------------------------~ 102 (218)
..++.++||+|||+-......+..-..+++..|..+ ..+.+++.++..+.- .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 457789999999985554333433356899999998 877777666543210 1
Q ss_pred -ceEEEEeecCCCCcccc--ccCCCCcEEEEcccccC----CcchHHHHHHHHHHhcCCCceEEEEEeec----------
Q 046623 103 -RVEVRELVWGSDDLSQL--SELGEFDMVIMSDVFYD----PEEMVGLGKTLKRVCGTGRHTVVWAVSEV---------- 165 (218)
Q Consensus 103 -~~~~~~~d~~~~~~~~~--~~~~~~D~Iv~~~~~~~----~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---------- 165 (218)
.-.++.+|+.+..+-.. ....+||+|++.-++.. .+.+...++.+.++|||||.+++...-..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 12577788876653211 01235999998777643 35677888889999999995544422111
Q ss_pred --cCChHHHHHHHHHhCCcEEEEEE
Q 046623 166 --RTRTGDCLHELIMSQGFRVIELT 188 (218)
Q Consensus 166 --~~~~~~~~~~~~~~~gf~~~~~~ 188 (218)
-...++.+...+++.||.+....
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 12366777777799999998876
No 234
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.14 E-value=3e-06 Score=72.10 Aligned_cols=106 Identities=23% Similarity=0.295 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCC-ceEEEEeecCCCCccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGG-RVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
++.++||.-||+|.-++..++. +..+|++-|+|+ +++.+++|++.|++.. .+++...|...... .....||+|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~---~~~~~fD~I 125 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY---SRQERFDVI 125 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC---HSTT-EEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh---hccccCCEE
Confidence 3458999999999999987654 457999999999 9999999999999986 56776655433211 146789999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
-. ||+.+ +.++++.+.+.++.|| ++.++++..+
T Consensus 126 Dl-DPfGS---p~pfldsA~~~v~~gG-ll~vTaTD~a 158 (377)
T PF02005_consen 126 DL-DPFGS---PAPFLDSALQAVKDGG-LLCVTATDTA 158 (377)
T ss_dssp EE---SS-----HHHHHHHHHHEEEEE-EEEEEE--HH
T ss_pred Ee-CCCCC---ccHhHHHHHHHhhcCC-EEEEeccccc
Confidence 99 78754 5899999999999998 6677666643
No 235
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1.5e-05 Score=66.42 Aligned_cols=104 Identities=22% Similarity=0.230 Sum_probs=78.6
Q ss_pred CCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
..+|+|--||+|.-++..+ +.+..+++.-|+|| +++.++.|++.|...+ ..++..|....-. .....||+|-.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~---~~~~~fd~IDi- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLH---ELHRAFDVIDI- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHH---hcCCCccEEec-
Confidence 6799999999999999886 44445899999999 9999999999984332 4555444332211 13478999999
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
|||.+ +.++++.+.+.++.+| ++.++++...
T Consensus 128 DPFGS---PaPFlDaA~~s~~~~G-~l~vTATD~a 158 (380)
T COG1867 128 DPFGS---PAPFLDAALRSVRRGG-LLCVTATDTA 158 (380)
T ss_pred CCCCC---CchHHHHHHHHhhcCC-EEEEEecccc
Confidence 78754 5789999999999988 6666666643
No 236
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.11 E-value=5.5e-06 Score=71.60 Aligned_cols=127 Identities=16% Similarity=0.014 Sum_probs=72.6
Q ss_pred ccccchhHHHHHHHHhc-CCC-CCC---CeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEE
Q 046623 32 GAWLWDSALILAQFIST-HFD-FQN---KSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEV 106 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~-~~~-~~~---~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~ 106 (218)
|..+..++....+.|.+ .+. ..+ .++||+|||+|.++..+...+. -+..+-.+...+...+-+.+.|++.-+.+
T Consensus 91 gt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGvpa~~~~ 169 (506)
T PF03141_consen 91 GTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGVPAMIGV 169 (506)
T ss_pred CccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCcchhhhh
Confidence 44444555555555554 222 122 4799999999999999988766 23333332211111122223454422111
Q ss_pred EEeecCCCCccccccCCCCcEEEEcccccCC-cchHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 107 RELVWGSDDLSQLSELGEFDMVIMSDVFYDP-EEMVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 107 ~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-~~~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
. .-...+. +...||+|-++.+...+ ..-.-++-++.|+|+||| .+++..++.+
T Consensus 170 ~--~s~rLPf----p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG-yfv~S~ppv~ 223 (506)
T PF03141_consen 170 L--GSQRLPF----PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG-YFVLSGPPVY 223 (506)
T ss_pred h--ccccccC----CccchhhhhcccccccchhcccceeehhhhhhccCc-eEEecCCccc
Confidence 1 0122222 78899999998887543 223457888999999999 5555555544
No 237
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.10 E-value=1.2e-05 Score=66.09 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ 118 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (218)
+.+.+......++..+||.+||.|..+..+++.. ..+|+++|.++ +++.+++.+.. .+++.++..++.+.....
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence 3344443323467799999999999999998664 36899999999 99999988755 256888888776543211
Q ss_pred cccCCCCcEEEEcc
Q 046623 119 LSELGEFDMVIMSD 132 (218)
Q Consensus 119 ~~~~~~~D~Iv~~~ 132 (218)
.....++|.|+++.
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 00112789988743
No 238
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.08 E-value=7.7e-05 Score=60.64 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=68.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++..|||+|+|.|.++..+++.+ .+++++|+++ .++.+++.+.. ..+++++..|+........ .......|++
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~~~-~~~~~~~vv~ 103 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLYDL-LKNQPLLVVG 103 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGGGH-CSSSEEEEEE
T ss_pred CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccHHh-hcCCceEEEE
Confidence 478899999999999999999887 6999999999 98888887652 2569999999887664221 1235567778
Q ss_pred cccccCCcchHHHHHHHHHHhcC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGT 153 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~ 153 (218)
|-|++ -..+++..+...-+.
T Consensus 104 NlPy~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 104 NLPYN---ISSPILRKLLELYRF 123 (262)
T ss_dssp EETGT---GHHHHHHHHHHHGGG
T ss_pred Eeccc---chHHHHHHHhhcccc
Confidence 76652 235666666654444
No 239
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.07 E-value=1.7e-05 Score=61.47 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++.+||++|-|-|.....+.+.++.+-+.+|..+ .+++.+.+--... .++-+..+-|++..... ++..||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L--~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTL--PDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccc--cccCcceeEe
Confidence 57899999999999999999877776777889999 8888776643322 55778888887765422 5677999997
Q ss_pred cccc-cCCcchHHHHHHHHHHhcCCC
Q 046623 131 SDVF-YDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~-~~~~~~~~~l~~~~~lL~~gG 155 (218)
+.+ .+-++...+.+.+.++|||+|
T Consensus 176 -DTy~e~yEdl~~~hqh~~rLLkP~g 200 (271)
T KOG1709|consen 176 -DTYSELYEDLRHFHQHVVRLLKPEG 200 (271)
T ss_pred -echhhHHHHHHHHHHHHhhhcCCCc
Confidence 444 334777888889999999999
No 240
>PRK10742 putative methyltransferase; Provisional
Probab=98.06 E-value=2e-05 Score=62.81 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=60.1
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh------C--CCCceEEEEeecCCCCccccccCCCCc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN------G--LGGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~------~--~~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
+|||+.+|+|..++.++..|+ +|+++|.++ ....++.+++.. + +..+++++..|..+.... ....||
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fD 166 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQ 166 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCc
Confidence 899999999999999999988 599999999 988899888774 2 224577777665443321 234799
Q ss_pred EEEEcccccCC
Q 046623 127 MVIMSDVFYDP 137 (218)
Q Consensus 127 ~Iv~~~~~~~~ 137 (218)
+|++.++|.+.
T Consensus 167 VVYlDPMfp~~ 177 (250)
T PRK10742 167 VVYLDPMFPHK 177 (250)
T ss_pred EEEECCCCCCC
Confidence 99997777654
No 241
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.05 E-value=2.2e-05 Score=57.54 Aligned_cols=58 Identities=33% Similarity=0.367 Sum_probs=49.0
Q ss_pred eEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC
Q 046623 56 SVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD 114 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 114 (218)
+++|+|||.|..+..+++.+. .+++++|.++ +.+.++++++.++..+ +.+....+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeCC
Confidence 489999999999999987765 3899999999 9999999999988754 78887766543
No 242
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.04 E-value=9.9e-06 Score=66.77 Aligned_cols=109 Identities=20% Similarity=0.174 Sum_probs=85.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHH-------HHHHHHHHhCCC-CceEEEEeecCCCCccccccC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLP-------GLINNVEANGLG-GRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~-------~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 122 (218)
.+|+.|.|-.-|||.+.+.++..|+ .|+|.|++- ++. ..+.|++..|.. .-+.+..+|..+..+. ..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r---sn 282 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR---SN 282 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh---hc
Confidence 4688999999999999999999988 999999998 554 578899998854 3357778887776653 45
Q ss_pred CCCcEEEEcccccCCc---------------------------------chHHHHHHHHHHhcCCCceEEEEEee
Q 046623 123 GEFDMVIMSDVFYDPE---------------------------------EMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~---------------------------------~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
..||.|+|.+|+.-.+ ....++....+.|..||++++|..+.
T Consensus 283 ~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 283 LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 6899999987764221 14567777888999999888886533
No 243
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.04 E-value=2.2e-05 Score=66.45 Aligned_cols=100 Identities=21% Similarity=0.203 Sum_probs=83.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.++..++|+|||.|.+...++......+++++.++ .+..+.......++.+...++..|+..... ++..||.+.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f----edn~fd~v~~ 184 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF----EDNTFDGVRF 184 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC----CccccCcEEE
Confidence 45668999999999999999988877999999998 776666665555565556666667666655 7789999999
Q ss_pred cccccCCcchHHHHHHHHHHhcCCC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.+..-+.++...+++++.+.++|||
T Consensus 185 ld~~~~~~~~~~~y~Ei~rv~kpGG 209 (364)
T KOG1269|consen 185 LEVVCHAPDLEKVYAEIYRVLKPGG 209 (364)
T ss_pred EeecccCCcHHHHHHHHhcccCCCc
Confidence 9998889999999999999999999
No 244
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.02 E-value=5.5e-05 Score=55.17 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=75.3
Q ss_pred eEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC---------cchHHHHHHH
Q 046623 78 RVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP---------EEMVGLGKTL 147 (218)
Q Consensus 78 ~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~---------~~~~~~l~~~ 147 (218)
+|.+.|+.+ |++..++.++..+..++++++..+=+... ...+.+++|.++.|--+-.. +..-+.++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~--~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD--EYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG--GT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH--hhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999 99999999999988888888875533322 11122589999987554322 2345677788
Q ss_pred HHHhcCCCceEEEEEeeccC------ChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEE
Q 046623 148 KRVCGTGRHTVVWAVSEVRT------RTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVY 202 (218)
Q Consensus 148 ~~lL~~gG~~~i~~~~~~~~------~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~ 202 (218)
.++|+|||.+.++++..... .+.++++.+ ....|.+.+.....+...|....+.
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L-~~~~~~V~~~~~~N~~~~pp~l~~i 138 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL-DQKEFNVLKYQFINQKNNPPLLVII 138 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS--TTTEEEEEEEESS-SS---EEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC-CcceEEEEEEEccCCCCCCCEEEEE
Confidence 88999999666666654332 233444444 5678998888777777666655443
No 245
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.01 E-value=0.00026 Score=60.08 Aligned_cols=126 Identities=14% Similarity=0.052 Sum_probs=86.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHH--hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR--LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~--~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+|||..+..|.=+.++|. .....+++.|.+. -+...+.|+.+.|+.+ ..+...|....+. .. ..++||-|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~-~~-~~~~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPE-KE-FPGSFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccc-cc-cCccccee
Confidence 5788999999999976666543 2345899999999 9999999999999865 4455555443321 11 22389999
Q ss_pred EEcccccCC----------------------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC
Q 046623 129 IMSDVFYDP----------------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ 180 (218)
Q Consensus 129 v~~~~~~~~----------------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~ 180 (218)
++..|+.-. ....+++..+.+++++||.++.-+++..-..-+..+.+++.+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR 390 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC
Confidence 998887541 1156788888899999994443344444455666677764443
No 246
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.99 E-value=0.00018 Score=52.83 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=60.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-----hCCCeEEEecCcc-hHHHHHHHHHHhC--CCCceEEEEeecCCCCccccccCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-----LGATRVVLTDVKP-LLPGLINNVEANG--LGGRVEVRELVWGSDDLSQLSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-----~~~~~v~~~D~~~-~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~ 123 (218)
.+..+|+|+|||.|.++..++. ....+|+++|.++ ..+.+.+..+..+ ...+..+...+..+.. ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-----SSD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-----ccC
Confidence 4667999999999999999977 4456999999999 8888888887766 3334555544333221 245
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHH
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKR 149 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~ 149 (218)
..++++.-..+. .....+++...+
T Consensus 99 ~~~~~vgLHaCG--~Ls~~~l~~~~~ 122 (141)
T PF13679_consen 99 PPDILVGLHACG--DLSDRALRLFIR 122 (141)
T ss_pred CCeEEEEeeccc--chHHHHHHHHHH
Confidence 567777544432 223444444443
No 247
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.95 E-value=7.4e-05 Score=62.04 Aligned_cols=93 Identities=17% Similarity=0.100 Sum_probs=72.6
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
...+|+|+|.|..+..+... ..++-+++.+. .+..++++.. .| ++.+.+|..... .+-|+|++--+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~-------P~~daI~mkWi 245 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT-------PKGDAIWMKWI 245 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceecccccccC-------CCcCeEEEEee
Confidence 68999999999998888664 34788999887 6666666654 43 677777777653 34679999999
Q ss_pred ccCC--cchHHHHHHHHHHhcCCCceEEE
Q 046623 134 FYDP--EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 134 ~~~~--~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|++ ++..++++++.+.|+|+|.+++.
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 9986 56899999999999999955444
No 248
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.93 E-value=0.00018 Score=58.82 Aligned_cols=110 Identities=21% Similarity=0.189 Sum_probs=64.2
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.+++.+.+|||+|||+|.-...+... ...+++++|.|+ +++.++.-+............ ........+....
T Consensus 29 ~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 103 (274)
T PF09243_consen 29 LPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-----RVLYRDFLPFPPD 103 (274)
T ss_pred CcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-----hhhhcccccCCCC
Confidence 45677889999999999766655322 345899999999 888777765443211111010 0000001123345
Q ss_pred cEEEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeecc
Q 046623 126 DMVIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEVR 166 (218)
Q Consensus 126 D~Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~~ 166 (218)
|+|+++.++..... ...+++.+.+.+++ .++++....+
T Consensus 104 DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~---~LVlVEpGt~ 143 (274)
T PF09243_consen 104 DLVIASYVLNELPSAARAELVRSLWNKTAP---VLVLVEPGTP 143 (274)
T ss_pred cEEEEehhhhcCCchHHHHHHHHHHHhccC---cEEEEcCCCh
Confidence 99999988866544 44455555444443 4555554433
No 249
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.88 E-value=8.2e-06 Score=66.07 Aligned_cols=100 Identities=19% Similarity=0.101 Sum_probs=78.2
Q ss_pred CCCeEEEECCCCCHHHH-HHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGL-TAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~-~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..|+|+.+|-|.+.+ ++..+|++.|+++|.+| +++.++.+++.|++.++..+..+|-.... +....|.|.+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-----~~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-----PRLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-----ccccchheee
Confidence 35789999999999999 67788999999999999 99999999999988777777766644433 5678899988
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
.-... .++-+-.+.++|+|.|.-++.+
T Consensus 269 GLlPS----se~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 269 GLLPS----SEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred ccccc----cccchHHHHHHhhhcCCcEEEE
Confidence 65533 3555666788899877534443
No 250
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.87 E-value=0.0011 Score=51.85 Aligned_cols=141 Identities=14% Similarity=0.096 Sum_probs=93.2
Q ss_pred CCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+.++.|+||-=+.+...+.+.+ +..+++.|+++ .++.|.+++..++..+++++..+|-..... ..+.+|+|+..
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~----~~d~~d~ivIA 92 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE----LEDEIDVIVIA 92 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC----ccCCcCEEEEe
Confidence 4459999999999999987554 46899999999 999999999999988888888777543322 55689999874
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCCCCCCceeEEEecCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (218)
.+= ......++++-..-|+.- ..+++ .+. ....+.-+++ ...+|.+..-.+..+ ....+.+..+.+.
T Consensus 93 GMG--G~lI~~ILee~~~~l~~~-~rlIL-QPn--~~~~~LR~~L-~~~~~~I~~E~ileE--~~kiYEIlv~e~~ 159 (226)
T COG2384 93 GMG--GTLIREILEEGKEKLKGV-ERLIL-QPN--IHTYELREWL-SANSYEIKAETILEE--DGKIYEILVVEKS 159 (226)
T ss_pred CCc--HHHHHHHHHHhhhhhcCc-ceEEE-CCC--CCHHHHHHHH-HhCCceeeeeeeecc--cCeEEEEEEEecC
Confidence 431 134556666666666532 12333 322 3344444555 889999876543333 2244444444433
No 251
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.86 E-value=0.00028 Score=57.27 Aligned_cols=132 Identities=18% Similarity=0.161 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC-----------------------------
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG----------------------------- 101 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~----------------------------- 101 (218)
..+.+||--|||.|.++-.+|+.|. .+.+.|.|- |+-.. ++..|+..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 3456899999999999999999987 899999998 64332 22222100
Q ss_pred ------------CceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec----
Q 046623 102 ------------GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV---- 165 (218)
Q Consensus 102 ------------~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~---- 165 (218)
.++....+|+...-... ...++||+|+..--+--....-++++.+.++||||| +.+...+.
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~-~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG--~WIN~GPLlyh~ 208 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPD-ENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG--YWINFGPLLYHF 208 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCc-ccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC--EEEecCCccccC
Confidence 11223333333222100 013689999975332223557889999999999999 33322221
Q ss_pred ----------cCChHHHHHHHHHhCCcEEEEEEc
Q 046623 166 ----------RTRTGDCLHELIMSQGFRVIELTC 189 (218)
Q Consensus 166 ----------~~~~~~~~~~~~~~~gf~~~~~~~ 189 (218)
-+...+.+..++...||++.+...
T Consensus 209 ~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 112334555555889999987643
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.76 E-value=0.00033 Score=57.05 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=70.7
Q ss_pred CCeEEEECCCCCHHHH-HHHH-hC-CCeEEEecCcc-hHHHHHHHHH-HhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 54 NKSVLELGAGAGLPGL-TAAR-LG-ATRVVLTDVKP-LLPGLINNVE-ANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~-~l~~-~~-~~~v~~~D~~~-~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
+.+|+=||||+=.++. .+++ .+ ...++++|+++ +.+.+++... ..++..++.|+.+|..+... .-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~----dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY----DLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G----G----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc----ccccCCEE
Confidence 4599999999775544 4453 33 24799999999 9999988877 45566779999888654432 34689999
Q ss_pred EEccccc-CCcchHHHHHHHHHHhcCCCceEEEEEee-ccCChHHHHHHHHHhCCcEEEEE
Q 046623 129 IMSDVFY-DPEEMVGLGKTLKRVCGTGRHTVVWAVSE-VRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 129 v~~~~~~-~~~~~~~~l~~~~~lL~~gG~~~i~~~~~-~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+...... ..+.-.++++.+.+.++||. .+++-+.. .|.......... .-.||.+..+
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga-~l~~Rsa~GlR~~LYp~vd~~-~l~gf~~~~~ 255 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGA-RLVVRSAHGLRSFLYPVVDPE-DLRGFEVLAV 255 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTS-EEEEEE--GGGGGSS----TG-GGTTEEEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCc-EEEEecchhhHHHcCCCCChH-HCCCeEEEEE
Confidence 9755443 23577899999999999998 44443332 344333333332 2348888766
No 253
>PHA01634 hypothetical protein
Probab=97.75 E-value=0.00017 Score=51.29 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=56.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
+.++++|+|+|++.|..++.++..|+++|++++.++ ..+..+.|.+.+.+-+.. +...+|.. .-+.||+.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~-v~~~eW~~-------~Y~~~Di~~ 97 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKA-VMKGEWNG-------EYEDVDIFV 97 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeece-eecccccc-------cCCCcceEE
Confidence 478999999999999999999999999999999999 999999999888654322 22223432 236788888
Q ss_pred E
Q 046623 130 M 130 (218)
Q Consensus 130 ~ 130 (218)
+
T Consensus 98 i 98 (156)
T PHA01634 98 M 98 (156)
T ss_pred E
Confidence 7
No 254
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.72 E-value=0.00085 Score=48.45 Aligned_cols=97 Identities=31% Similarity=0.310 Sum_probs=61.8
Q ss_pred EEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC--CccccccC-CCCcEEEE
Q 046623 57 VLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD--DLSQLSEL-GEFDMVIM 130 (218)
Q Consensus 57 vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~D~Iv~ 130 (218)
++|+|||+|... .+..... ..++++|.++ ++..+......... ..+.+...|.... .. .. ..+|++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPF----EDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCC----CCCCceeEEee
Confidence 999999999876 4433322 3788899999 77774444322111 1146666665542 21 22 47999944
Q ss_pred cccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
....+... ....+..+.+.++|+|.+++.
T Consensus 126 ~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~ 154 (257)
T COG0500 126 LLVLHLLP-PAKALRELLRVLKPGGRLVLS 154 (257)
T ss_pred eeehhcCC-HHHHHHHHHHhcCCCcEEEEE
Confidence 44443333 788999999999999944433
No 255
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00094 Score=52.52 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=59.6
Q ss_pred HHHHHHhc-CCC--CCCCeEEEECCCCCHH--HHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh-CCCCceEEEEeecCC
Q 046623 41 ILAQFIST-HFD--FQNKSVLELGAGAGLP--GLTAARLGATRVVLTDVKP-LLPGLINNVEAN-GLGGRVEVRELVWGS 113 (218)
Q Consensus 41 ~l~~~l~~-~~~--~~~~~vLDlG~G~G~~--~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-~~~~~~~~~~~d~~~ 113 (218)
.+++++.. ... .++.++||||.|.-.+ .+-...+|- +.++.|+++ +++.|+.++..| ++...+....-.=.+
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~ 141 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD 141 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc
Confidence 34555544 222 3456899999885422 222334544 899999999 999999999988 665545554321111
Q ss_pred CCcc-ccccCCCCcEEEEcccccCC
Q 046623 114 DDLS-QLSELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 114 ~~~~-~~~~~~~~D~Iv~~~~~~~~ 137 (218)
.... .....+.||...||+|||..
T Consensus 142 ~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 142 AIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccceeeeEecCCCcchh
Confidence 1111 11135789999999999854
No 256
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.67 E-value=4e-05 Score=59.11 Aligned_cols=114 Identities=16% Similarity=0.174 Sum_probs=74.4
Q ss_pred cccccchhHHHHHHHHhcCCC--CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEE
Q 046623 31 TGAWLWDSALILAQFISTHFD--FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVR 107 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~ 107 (218)
..+++.+-.++-.-+....+. ..+.++||+|+|.|-.+..++.. ..+|.++|.|. +..+.++. + ..+.
T Consensus 88 GsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----ynVl 158 (288)
T KOG3987|consen 88 GSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YNVL 158 (288)
T ss_pred CceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Ccee
Confidence 344444444433333333233 45679999999999999888654 34789999988 77665432 1 1111
Q ss_pred -EeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcC-CCceEEE
Q 046623 108 -ELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGT-GRHTVVW 160 (218)
Q Consensus 108 -~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~-gG~~~i~ 160 (218)
..+|.+ ..-++|+|.|-+.+....++-++++.+...++| +|++++-
T Consensus 159 ~~~ew~~-------t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 159 TEIEWLQ-------TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred eehhhhh-------cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 122322 234699999988876667889999999999999 7755543
No 257
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00016 Score=61.58 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=70.2
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
.|||||+|+|.++..+++.|+.+|+++|.=. +...|++....|++++.++++.- ....-.+.+..+.|+++.-..-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk---rStev~vg~~~RadI~v~e~fd 145 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK---RSTEVKVGGSSRADIAVREDFD 145 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc---ccceeeecCcchhhhhhHhhhh
Confidence 5999999999999999999998999999888 99999999999999988888852 1111111123447777752221
Q ss_pred c---CCcchHHHHHHHHHHhcCCCceE
Q 046623 135 Y---DPEEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 135 ~---~~~~~~~~l~~~~~lL~~gG~~~ 158 (218)
- -...+..+-.....++++|...+
T Consensus 146 tEligeGalps~qhAh~~L~~~nc~~V 172 (636)
T KOG1501|consen 146 TELIGEGALPSLQHAHDMLLVDNCKTV 172 (636)
T ss_pred hhhhccccchhHHHHHHHhcccCCeec
Confidence 1 11234555555666777776433
No 258
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.65 E-value=0.0016 Score=53.34 Aligned_cols=137 Identities=14% Similarity=0.005 Sum_probs=82.0
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+++|+.||.|.++..+...|...+.++|+++ +++..+.|.... +...|+.+...... ...+|++++++|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~--~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF--IPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc--CCCCCEEEeCCCC
Confidence 6899999999999999888887789999999 998888876321 34455554432111 3569999999988
Q ss_pred cCC----------cchHHHHHHHHHH---hcCCCceEEEEEeec------cCChHHHHHHHHHhCCcEEEEEEcc----C
Q 046623 135 YDP----------EEMVGLGKTLKRV---CGTGRHTVVWAVSEV------RTRTGDCLHELIMSQGFRVIELTCQ----L 191 (218)
Q Consensus 135 ~~~----------~~~~~~l~~~~~l---L~~gG~~~i~~~~~~------~~~~~~~~~~~~~~~gf~~~~~~~~----~ 191 (218)
... +....++....++ ++|. .+++-.... ..........+ ++.|+.+...-+. -
T Consensus 73 q~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l-~~~GY~~~~~~l~a~~~G 149 (275)
T cd00315 73 QPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTL-EELGYNVYWKLLNASDYG 149 (275)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHH-HhCCcEEEEEEEEHHHcC
Confidence 521 1223344444333 3552 333321111 11234444555 8889887655222 2
Q ss_pred CCCCCCceeEEEe
Q 046623 192 GGGCPEAFAVYEL 204 (218)
Q Consensus 192 ~~~~~~~~~l~~~ 204 (218)
-+..+++..++=.
T Consensus 150 vPQ~R~R~~~ia~ 162 (275)
T cd00315 150 VPQNRERVFIIGI 162 (275)
T ss_pred CCCCCcEEEEEEE
Confidence 3445555555433
No 259
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.61 E-value=3.8e-05 Score=61.96 Aligned_cols=125 Identities=20% Similarity=0.176 Sum_probs=82.2
Q ss_pred cCCCCccc-cccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 21 VCDSVTGR-PLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 21 ~~~~~~~~-~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
+|+..... ..+.+..|+.. ..++... ..+..++|.|||.|-....- +...+++.|.+. .+.-+++-
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v---~qfl~~~--~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~---- 84 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMV---RQFLDSQ--PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS---- 84 (293)
T ss_pred HHHHhhhhccccccCccHHH---HHHHhcc--CCcceeeecccCCcccCcCC---CcceeeecchhhhhccccccC----
Confidence 44433333 33455567763 3444432 23779999999998543221 445789999887 55444322
Q ss_pred CCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC---cchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 99 GLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP---EEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 99 ~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~---~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
+.......|....+. ...+||.++...++||. .....++++..+.++|||..++++-..
T Consensus 85 ---~~~~~~~ad~l~~p~----~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 85 ---GGDNVCRADALKLPF----REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred ---CCceeehhhhhcCCC----CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 212456666666654 67899999998898885 457889999999999999877775433
No 260
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=8.1e-05 Score=64.22 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAARL--GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~--~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
++.+|||.-|++|.-++..++. +..++++.|.++ +++..+.|.+.|+..+.++....|....-...-.....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4568999999999999887643 446899999999 9999999999998877676666665422111111347899999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
+ ||+.. ...+++.+.+.++.|| +++++++.
T Consensus 189 L-DPyGs---~s~FLDsAvqav~~gG-LL~vT~TD 218 (525)
T KOG1253|consen 189 L-DPYGS---PSPFLDSAVQAVRDGG-LLCVTCTD 218 (525)
T ss_pred c-CCCCC---ccHHHHHHHHHhhcCC-EEEEEecc
Confidence 9 77754 4789999999999999 55665555
No 261
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.49 E-value=0.0018 Score=54.31 Aligned_cols=128 Identities=23% Similarity=0.132 Sum_probs=82.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCC------CCceEEEEeecCCCCccccccCCCC
Q 046623 54 NKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGL------GGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
-.++|=+|.|.|.-..++.+++ ..+++.+|.+| +++.++.+.....+ ..+++++.-|..+... ...+.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr---~a~~~f 366 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR---TAADMF 366 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH---hhcccc
Confidence 3589999999999999999887 57999999999 99998855432211 2567777655443221 134689
Q ss_pred cEEEEcccccCCc-----chHHHHHHHHHHhcCCCceEEEEEeecc--CChHHHHHHHHHhCCcEEE
Q 046623 126 DMVIMSDVFYDPE-----EMVGLGKTLKRVCGTGRHTVVWAVSEVR--TRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 126 D~Iv~~~~~~~~~-----~~~~~l~~~~~lL~~gG~~~i~~~~~~~--~~~~~~~~~~~~~~gf~~~ 185 (218)
|.|+..-+=-+.+ -..++-..+.+.|+++|.+++-...... ...-.....+ ++.|+...
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTi-k~AG~~~~ 432 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATI-KSAGYRVW 432 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHH-HhCcceee
Confidence 9999743311111 1366778889999999944333332211 1112223344 78887653
No 262
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.002 Score=49.12 Aligned_cols=133 Identities=13% Similarity=0.013 Sum_probs=74.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-h-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEe-ecCCCCccc----cccCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-L-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVREL-VWGSDDLSQ----LSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~----~~~~~ 123 (218)
.++.+|||+||.+|.++..+.+ . +...|.++|+-. .... .+.++.+ |+.+..... ..+..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~------------Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPE------------GATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCC------------CcccccccccCCHHHHHHHHHhCCCC
Confidence 4688999999999999998853 3 446899999755 2111 1233333 544443221 12456
Q ss_pred CCcEEEEcccccCC-----cc-------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE--Ec
Q 046623 124 EFDMVIMSDVFYDP-----EE-------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL--TC 189 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~-----~~-------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~--~~ 189 (218)
..|+|++ ++..+. -+ ..+.+......++|+|.+++-+... .....+.+.+ ..-|...+. |.
T Consensus 136 ~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g--~e~~~l~r~l--~~~f~~Vk~vKP~ 210 (232)
T KOG4589|consen 136 PVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG--SEEALLQRRL--QAVFTNVKKVKPD 210 (232)
T ss_pred cccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC--CchHHHHHHH--HHHhhhcEeeCCc
Confidence 7899987 444332 12 2333444455678999444443333 4444444444 344554444 55
Q ss_pred cCCCCCCCceeE
Q 046623 190 QLGGGCPEAFAV 201 (218)
Q Consensus 190 ~~~~~~~~~~~l 201 (218)
-.+....+.+.+
T Consensus 211 Asr~eS~E~y~v 222 (232)
T KOG4589|consen 211 ASRDESAETYLV 222 (232)
T ss_pred cccccccceeee
Confidence 555455555444
No 263
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.43 E-value=0.0024 Score=53.35 Aligned_cols=106 Identities=9% Similarity=0.040 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEE--EEeecCCCCc--cccccC
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEV--RELVWGSDDL--SQLSEL 122 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~--~~~d~~~~~~--~~~~~~ 122 (218)
++..++|+|||+|.-...+ .+.+ ...++++|+|. +++.+..++.....+ .+.+ +.+|+.+... ......
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhccccccc
Confidence 4568999999999654433 1121 24799999999 999999988733332 2444 6666654321 000011
Q ss_pred CCCcEEE-EcccccCC--cchHHHHHHHHH-HhcCCCceEE
Q 046623 123 GEFDMVI-MSDVFYDP--EEMVGLGKTLKR-VCGTGRHTVV 159 (218)
Q Consensus 123 ~~~D~Iv-~~~~~~~~--~~~~~~l~~~~~-lL~~gG~~~i 159 (218)
....+++ ....+.+. .....+++.+++ .|+||+.+++
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2345555 45566653 456688899998 9999994443
No 264
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.38 E-value=1.8e-05 Score=55.08 Aligned_cols=95 Identities=20% Similarity=0.122 Sum_probs=38.6
Q ss_pred EEECCCCCHHHHHHHHh----CCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 58 LELGAGAGLPGLTAARL----GATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~----~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
||+|+..|..+..+++. +..+++++|..+..+...+.++..+...+++++.++..+... .. ..+++|+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~-~~-~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLP-SL-PDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHH-HH-HH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHH-Hc-CCCCEEEEEECCC
Confidence 69999999887776432 223799999887544455555555565678999877643321 11 2478999999543
Q ss_pred ccCCcchHHHHHHHHHHhcCCC
Q 046623 134 FYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 134 ~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|..+.....++.+.+.|+|||
T Consensus 79 -H~~~~~~~dl~~~~~~l~~gg 99 (106)
T PF13578_consen 79 -HSYEAVLRDLENALPRLAPGG 99 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCe
Confidence 333556667788888999999
No 265
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.33 E-value=0.011 Score=52.42 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=84.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C----CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-cccCCCC
Q 046623 53 QNKSVLELGAGAGLPGLTAARL-G----ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-LSELGEF 125 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~-~----~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~ 125 (218)
+..+|+|..||+|.+.+...+. + ...+.|.|+++ ....++-|+-.+++...+....+|-...+... .....+|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 4559999999999887776432 1 24689999999 99999999999887632344444333222110 1134679
Q ss_pred cEEEEcccccCC-------------------------cchHHHHHHHHHHhcCCCceEEEEEeec--cCChHHHHHHHHH
Q 046623 126 DMVIMSDVFYDP-------------------------EEMVGLGKTLKRVCGTGRHTVVWAVSEV--RTRTGDCLHELIM 178 (218)
Q Consensus 126 D~Iv~~~~~~~~-------------------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~--~~~~~~~~~~~~~ 178 (218)
|.|++++|+... ....+++..+...|+|+|+..+++.... +...+..++..+.
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~ 345 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLL 345 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHH
Confidence 999999998510 1126788888999999886666665553 3334555555544
Q ss_pred h
Q 046623 179 S 179 (218)
Q Consensus 179 ~ 179 (218)
+
T Consensus 346 ~ 346 (489)
T COG0286 346 E 346 (489)
T ss_pred h
Confidence 4
No 266
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.26 E-value=0.0084 Score=49.84 Aligned_cols=136 Identities=16% Similarity=0.043 Sum_probs=80.1
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+++|+.||.|.+++.+.+.|...+.++|+++ +.+.-+.|+. .....|+........ +. .+|+++.++|+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-PK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-HH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-cc-cceEEEeccCC
Confidence 6899999999999999998877899999999 9999888873 566667766554322 22 59999999988
Q ss_pred cCC----------cc----hHHHHHHHHHHhcCCCceEEEEEeec-cC-----ChHHHHHHHHHhCCcEEEEEE----cc
Q 046623 135 YDP----------EE----MVGLGKTLKRVCGTGRHTVVWAVSEV-RT-----RTGDCLHELIMSQGFRVIELT----CQ 190 (218)
Q Consensus 135 ~~~----------~~----~~~~l~~~~~lL~~gG~~~i~~~~~~-~~-----~~~~~~~~~~~~~gf~~~~~~----~~ 190 (218)
... +. ...+++.+ +.++|. .+++=.... .. .....++.+ .+.|+.+...- .+
T Consensus 72 Q~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk--~~~~ENV~~l~~~~~~~~~~~i~~~l-~~lGY~v~~~vlna~~y 147 (335)
T PF00145_consen 72 QGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPK--YFLLENVPGLLSSKNGEVFKEILEEL-EELGYNVQWRVLNAADY 147 (335)
T ss_dssp TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-S--EEEEEEEGGGGTGGGHHHHHHHHHHH-HHTTEEEEEEEEEGGGG
T ss_pred ceEeccccccccccccchhhHHHHHHH-hhccce--EEEecccceeeccccccccccccccc-cccceeehhccccHhhC
Confidence 531 11 22333333 356773 344432221 11 134444555 88898776542 22
Q ss_pred CCCCCCCceeEEEec
Q 046623 191 LGGGCPEAFAVYELI 205 (218)
Q Consensus 191 ~~~~~~~~~~l~~~~ 205 (218)
--+..+.+..+.=..
T Consensus 148 GvPQ~R~R~fivg~r 162 (335)
T PF00145_consen 148 GVPQNRERVFIVGIR 162 (335)
T ss_dssp TSSBE-EEEEEEEEE
T ss_pred CCCCceeeEEEEEEC
Confidence 333555555554433
No 267
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.26 E-value=0.0012 Score=52.35 Aligned_cols=78 Identities=22% Similarity=0.213 Sum_probs=45.7
Q ss_pred CeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHH---HhCC-----CCceEEEEeecCCCCccccccCCCC
Q 046623 55 KSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVE---ANGL-----GGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~---~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.+|||.-+|-|..++.++..|+ +|+++|.++ .....+.-++ ...- ..+++++.+|..+... .+..+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~---~~~~s~ 152 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR---QPDNSF 152 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC---CHSS--
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh---hcCCCC
Confidence 3899999999999999998886 899999999 5544443332 2211 1368889888665432 267899
Q ss_pred cEEEEcccccC
Q 046623 126 DMVIMSDVFYD 136 (218)
Q Consensus 126 D~Iv~~~~~~~ 136 (218)
|+|.+.++|.+
T Consensus 153 DVVY~DPMFp~ 163 (234)
T PF04445_consen 153 DVVYFDPMFPE 163 (234)
T ss_dssp SEEEE--S---
T ss_pred CEEEECCCCCC
Confidence 99999777654
No 268
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0016 Score=54.26 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=68.3
Q ss_pred CCCCCCCeEEEECCCCCHHHHHHHHh-C-CCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCcc----ccccC
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTAARL-G-ATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLS----QLSEL 122 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~ 122 (218)
.+++...+|||+|.|.|.-..++... + ...++.++.|+++...-..+..+-.. ...||...... .....
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----EKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----ccCCCCCCccchhccCCCcc
Confidence 56678889999999999876665322 1 24678888888887777777666332 22333332211 11244
Q ss_pred CCCcEEEEcccccC---CcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 123 GEFDMVIMSDVFYD---PEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~---~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+.|+++++.+-+-+ .......++.+..+++||| +++++.
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg-~lVivE 225 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGG-HLVIVE 225 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCC-eEEEEe
Confidence 67788776655433 2344558888899999988 444433
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.20 E-value=0.0016 Score=50.68 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=61.6
Q ss_pred cccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH----h-CCCeEEEecCcc-hHHHHHHHHHHhCCCCce
Q 046623 31 TGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR----L-GATRVVLTDVKP-LLPGLINNVEANGLGGRV 104 (218)
Q Consensus 31 ~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~----~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~ 104 (218)
=|..++...+.+..+-.-....+++.|+|+|.-.|..++..|. . +.++|+++|++- ..... ..+...+..++
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI 87 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRI 87 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTE
T ss_pred CCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCce
Confidence 3455555555555443222236788999999999988877643 2 346999999964 33221 12223334679
Q ss_pred EEEEeecCCCCcc-cccc---CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 105 EVRELVWGSDDLS-QLSE---LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 105 ~~~~~d~~~~~~~-~~~~---~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+++.+|..+...- ++.. .....+|+. +.-|..+...+-++....++++|+
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGS 141 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCC
Confidence 9999987665421 1111 123334444 666666778888888999999998
No 270
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.14 E-value=0.0013 Score=53.04 Aligned_cols=138 Identities=13% Similarity=0.110 Sum_probs=90.1
Q ss_pred HHhcCCCCCCCeEEEECCCCCHHHHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccC
Q 046623 45 FISTHFDFQNKSVLELGAGAGLPGLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 45 ~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
+|..-.++.++.|+=+| -.-..+++++..+ +.++..+|+++ .+....+.+++.|.. +++.+..|+.+..++. ..
T Consensus 144 lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~--~~ 219 (354)
T COG1568 144 LMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPED--LK 219 (354)
T ss_pred eeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHH--HH
Confidence 34444556788899998 5556777776443 46899999999 999999999988875 3888888887766533 34
Q ss_pred CCCcEEEEcccccCCcchHHHHHHHHHHhcCCCce-EEEEEeec--cCChHHHHHHHHHhCCcEEEEE
Q 046623 123 GEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHT-VVWAVSEV--RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~-~i~~~~~~--~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.+||+.+..+| +-.+....++..--..|+..|.. .+.++... ...-.+..+.++.+.||.+.++
T Consensus 220 ~kFDvfiTDPp-eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdi 286 (354)
T COG1568 220 RKFDVFITDPP-ETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDI 286 (354)
T ss_pred hhCCeeecCch-hhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhh
Confidence 78999998544 34455566665555566654211 33333221 1122344444667888888765
No 271
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.04 E-value=0.0083 Score=47.99 Aligned_cols=127 Identities=18% Similarity=0.114 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
...+|+|||||.=.+++... ..+...+++.|++. +++.....+...+.. .++...|..... +....|+.++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-----~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-----PKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-----TTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-----CCCCcchhhH
Confidence 36799999999988888764 33335999999999 999999988888865 666766765543 5677999997
Q ss_pred cccccCCc--chHHHHHHHHHHhcCCCceEEEEEeeccC----------ChHHHHHHHHHhCCcEEEEEEcc
Q 046623 131 SDVFYDPE--EMVGLGKTLKRVCGTGRHTVVWAVSEVRT----------RTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 131 ~~~~~~~~--~~~~~l~~~~~lL~~gG~~~i~~~~~~~~----------~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
--.++..+ ....-++.+..+=.| .++++.+.+. .....++......++.+.+..+.
T Consensus 178 lK~lp~le~q~~g~g~~ll~~~~~~----~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~~~ 245 (251)
T PF07091_consen 178 LKTLPCLERQRRGAGLELLDALRSP----HVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLTFG 245 (251)
T ss_dssp ET-HHHHHHHSTTHHHHHHHHSCES----EEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEEET
T ss_pred HHHHHHHHHHhcchHHHHHHHhCCC----eEEEeccccccccCccccccCHHHHHHHhcccCCceeeeeecc
Confidence 54443321 112223333333233 3333444332 23344555546777777666443
No 272
>PRK11524 putative methyltransferase; Provisional
Probab=97.01 E-value=0.0021 Score=52.94 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHH
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEA 97 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~ 97 (218)
..|.+.+......+|+.|||..+|+|+.++++.+.+. +.+|+|+++ .++.+++++..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 3444444444446899999999999999999988875 899999999 99999988754
No 273
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.00 E-value=0.0012 Score=51.86 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=41.4
Q ss_pred ccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHH
Q 046623 34 WLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLIN 93 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~ 93 (218)
|...-...|.+.+......++..|||..||+|+.+.++.+.+. +.+++|+++ .++.|++
T Consensus 172 h~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred eeecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4444455555555553446789999999999999999998876 899999999 8888764
No 274
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.97 E-value=0.0047 Score=51.13 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=60.4
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (218)
+.+.+......++..++|.-+|.|..+..+++. +..+|+++|.++ ++..+++.++..+ .++.++..++.+......
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHHHHHHH
Confidence 333443322346779999999999999998754 346999999999 9999999886543 568888776654321100
Q ss_pred -ccCCCCcEEEEc
Q 046623 120 -SELGEFDMVIMS 131 (218)
Q Consensus 120 -~~~~~~D~Iv~~ 131 (218)
....++|.|+++
T Consensus 87 ~~~~~~vDgIl~D 99 (305)
T TIGR00006 87 ELLVTKIDGILVD 99 (305)
T ss_pred hcCCCcccEEEEe
Confidence 122468888864
No 275
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.94 E-value=0.031 Score=45.88 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCC--CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeec
Q 046623 41 ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGA--TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVW 111 (218)
Q Consensus 41 ~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~--~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~ 111 (218)
.+.+.+......++...+|.--|.|..+..+..... ++++++|.++ +++.+++.+..++ .++.++...+
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F 82 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF 82 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcH
Confidence 344444443335678999999999999998865432 5799999999 9999999987765 4566666543
No 276
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.006 Score=44.76 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+..+.+|+|+|.|.+-+.+++.|....+++|.++ .+...+-..-+.++..+..|..-|+..... ..|..++.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl------~dy~~vvi 144 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL------RDYRNVVI 144 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc------cccceEEE
Confidence 34568999999999999999999877899999999 888877777777777777887766655433 22333333
Q ss_pred cccccCCcchHHHHHHHHHHhcCCC
Q 046623 131 SDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 131 ~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
... ...+..+-..+..-+..+.
T Consensus 145 Fga---es~m~dLe~KL~~E~p~nt 166 (199)
T KOG4058|consen 145 FGA---ESVMPDLEDKLRTELPANT 166 (199)
T ss_pred eeh---HHHHhhhHHHHHhhCcCCC
Confidence 122 2333444455554555554
No 277
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.81 E-value=0.02 Score=47.89 Aligned_cols=132 Identities=14% Similarity=-0.001 Sum_probs=77.9
Q ss_pred EEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccccc
Q 046623 57 VLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFY 135 (218)
Q Consensus 57 vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~ 135 (218)
|+|+.||.|.++..+...|..-+.++|+++ +++.-+.|+.. .+...|+.+.... ....+|+++.++|+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~---~~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPS---DIPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhh---hCCCcCEEEecCCCc
Confidence 689999999999999888875577899999 88888877632 2233455544321 123589999988874
Q ss_pred CC----------cchHHHHHHHHHHh---cCCCceEEEEEeec-------cCChHHHHHHHHHhCCcEEEEE----EccC
Q 046623 136 DP----------EEMVGLGKTLKRVC---GTGRHTVVWAVSEV-------RTRTGDCLHELIMSQGFRVIEL----TCQL 191 (218)
Q Consensus 136 ~~----------~~~~~~l~~~~~lL---~~gG~~~i~~~~~~-------~~~~~~~~~~~~~~~gf~~~~~----~~~~ 191 (218)
.. +....++....+++ +|. .+++ .... .......+..+ ++.|+.+... .-+-
T Consensus 71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~-ENV~~l~~~~~~~~~~~i~~~l-~~~GY~v~~~~l~a~dyG 146 (315)
T TIGR00675 71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLL-ENVKGLVSHDKGRTFKVIIETL-EELGYKVYYKVLNAKDFG 146 (315)
T ss_pred ccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEe-eccHHHHhcccchHHHHHHHHH-HhCCCEEEEEEEcHHHCC
Confidence 31 12234444444444 552 2333 2221 11233444555 7888887554 2222
Q ss_pred CCCCCCceeEE
Q 046623 192 GGGCPEAFAVY 202 (218)
Q Consensus 192 ~~~~~~~~~l~ 202 (218)
-+..+++..+.
T Consensus 147 vPQ~R~R~f~i 157 (315)
T TIGR00675 147 VPQNRERIYIV 157 (315)
T ss_pred CCCCccEEEEE
Confidence 33455555443
No 278
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.80 E-value=0.012 Score=45.63 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCC------CceEEEEeecCCCCccccccCC-
Q 046623 53 QNKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLG------GRVEVRELVWGSDDLSQLSELG- 123 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~- 123 (218)
+.-.+.|||||-|.+.+.++ +.+-.-+.|.|+.- ..+..++.+.+.+.. .++.+.......... +....+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp-n~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP-NFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc-chhhhcc
Confidence 34579999999999999997 45555789999988 777777777665421 223333322221111 111112
Q ss_pred -CCcEEEEcccccCC------cchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 124 -EFDMVIMSDVFYDP------EEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 124 -~~D~Iv~~~~~~~~------~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
+-+..+..+|.+.. --...++.+..-+|+.|| .++..+.
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg--~~ytitD 184 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGG--ILYTITD 184 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCc--eEEEEee
Confidence 33445554554321 113567788888999999 5555544
No 279
>PRK13699 putative methylase; Provisional
Probab=96.73 E-value=0.0053 Score=48.84 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 40 LILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 40 ~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
..|.+.+.+....+++.|||..||+|..+..+.+.+. +.+++|+++ ..+.+.+++...
T Consensus 150 ~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 3444444443345788999999999999999988876 899999999 888888887653
No 280
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.67 E-value=0.017 Score=45.08 Aligned_cols=111 Identities=14% Similarity=0.005 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C--CCeEEEecCcc-hHHHHHHHHHHh-----------------------------
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-G--ATRVVLTDVKP-LLPGLINNVEAN----------------------------- 98 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~--~~~v~~~D~~~-~~~~a~~~~~~~----------------------------- 98 (218)
..+-++.|-.||+|.+...+... + ...|++.|+++ +++.|.+|+...
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 34568999999999887766422 2 25899999999 999999998643
Q ss_pred ------------CCCCceEEEEeecCCCCccccc-cCCCCcEEEEcccccCC---------cchHHHHHHHHHHhcCCCc
Q 046623 99 ------------GLGGRVEVRELVWGSDDLSQLS-ELGEFDMVIMSDVFYDP---------EEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 99 ------------~~~~~~~~~~~d~~~~~~~~~~-~~~~~D~Iv~~~~~~~~---------~~~~~~l~~~~~lL~~gG~ 156 (218)
|-.....+...|+.+....... .....|+|+..-|+.++ ....++++.+...| |+..
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vL-p~~s 208 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVL-PERS 208 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--TT-
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhC-CCCc
Confidence 1011144555566553221111 22347999997776543 23577899999999 5443
Q ss_pred eEEEEEee
Q 046623 157 TVVWAVSE 164 (218)
Q Consensus 157 ~~i~~~~~ 164 (218)
++++ +..
T Consensus 209 VV~v-~~k 215 (246)
T PF11599_consen 209 VVAV-SDK 215 (246)
T ss_dssp EEEE-EES
T ss_pred EEEE-ecC
Confidence 4444 444
No 281
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=96.62 E-value=0.065 Score=42.80 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=95.1
Q ss_pred EEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccC
Q 046623 58 LELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~ 136 (218)
|..-|||-.++..+.+.. .++.++|.-+ -....++|+... .++.+..+|-.........+.++=-+|++.+|+..
T Consensus 93 l~~YpGSP~lA~~llR~q-DRl~l~ELHp~D~~~L~~~f~~d---~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~ 168 (279)
T COG2961 93 LRYYPGSPLLARQLLREQ-DRLVLTELHPSDAPLLRNNFAGD---RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFEL 168 (279)
T ss_pred cccCCCCHHHHHHHcchh-ceeeeeecCccHHHHHHHHhCCC---cceEEEecCcHHHHhhhCCCCCcceEEEeCCCccc
Confidence 888899877777776654 4899999999 888888888633 45777776643332222235667789999899888
Q ss_pred CcchHHHHHHHHHHhc--CCCceEEEEEeeccCChHHHHHHHHHhCCc-EEEEEE
Q 046623 137 PEEMVGLGKTLKRVCG--TGRHTVVWAVSEVRTRTGDCLHELIMSQGF-RVIELT 188 (218)
Q Consensus 137 ~~~~~~~l~~~~~lL~--~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf-~~~~~~ 188 (218)
..++..+++.+.+.++ ++|...||-....+.....+.+.+ +..+. ++.++.
T Consensus 169 ~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L-~~~~i~kiL~iE 222 (279)
T COG2961 169 KDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRAL-EALGIRKILQIE 222 (279)
T ss_pred ccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHH-hhcCccceeeeE
Confidence 8899999999988887 588888888888888888888888 87777 444443
No 282
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=96.56 E-value=0.078 Score=39.87 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 37 DSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
++...|++.+.+.. ..+.+|+-|||=+-...+.-......+++..|.+. .... + .. .|..-|.....
T Consensus 10 ~T~~~l~~~l~~~~-~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~--~~-~F~fyD~~~p~ 77 (162)
T PF10237_consen 10 ETAEFLARELLDGA-LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G--GD-EFVFYDYNEPE 77 (162)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C--Cc-ceEECCCCChh
Confidence 45556666666521 24579999998553333333112345899999987 4322 1 12 34555554432
Q ss_pred ccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-EccCC
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQLG 192 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~~~ 192 (218)
.-.....+++|+|++.+|+...+-.......+..++++++ .+++++ . ...++.+.+++ ++..-.. |.+..
T Consensus 78 ~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~-kii~~T-g--~~~~~~~~~ll---~~~~~~f~p~h~~ 148 (162)
T PF10237_consen 78 ELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGG-KIILCT-G--EEMEELIKKLL---GLRMCDFQPEHPN 148 (162)
T ss_pred hhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccc-eEEEec-H--HHHHHHHHHHh---CeeEEeEEecccc
Confidence 1111125799999999998665556666677777778866 344433 2 23445555552 5555544 44443
No 283
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.09 Score=43.46 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=72.9
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC--CCce--------------------------
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGL--GGRV-------------------------- 104 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~--~~~~-------------------------- 104 (218)
.-+||--|||.|.++..++..|. .+-+-|.|- ++-. ..+..|.. ++.+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~--S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLIC--SSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHH--HHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45799999999999999998876 566666666 4422 12222110 0101
Q ss_pred -------------EEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeec------
Q 046623 105 -------------EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEV------ 165 (218)
Q Consensus 105 -------------~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~------ 165 (218)
..-.+|+.+.-.. -...+.||+|+..--+-.....-++++.+.++|+||| +.+...+.
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~-s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GG--vWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGT-SSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGG--VWINLGPLLYHFED 304 (369)
T ss_pred ccccccCCCCCCccccccceeEEecC-cCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCc--EEEeccceeeeccC
Confidence 1111222111100 0012469999875333333557788899999999999 32211110
Q ss_pred ---------cCChHHHHHHHHHhCCcEEEEE
Q 046623 166 ---------RTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 166 ---------~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
-+...+.+..++...||++.+.
T Consensus 305 ~~g~~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 305 THGVENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CCCCcccccccccHHHHHHHHHhcCcEEEEe
Confidence 0124455666668999999876
No 284
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.028 Score=48.93 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=73.2
Q ss_pred eEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccc
Q 046623 56 SVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVF 134 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~ 134 (218)
+++-+|||.--++..+-+.|...++.+|+|+ +++.....-... .....+...|...... ++++||+|+.-..+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~f----edESFdiVIdkGtl 124 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVF----EDESFDIVIDKGTL 124 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccC----CCcceeEEEecCcc
Confidence 9999999999999998888888999999999 776654333221 2346777777766655 78899999964333
Q ss_pred cCC----------cchHHHHHHHHHHhcCCCceEEEEE
Q 046623 135 YDP----------EEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 135 ~~~----------~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.+. ......+..+.++++++|+.+.+..
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 221 1234566788999999997666655
No 285
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=96.51 E-value=0.11 Score=43.03 Aligned_cols=148 Identities=15% Similarity=0.135 Sum_probs=87.9
Q ss_pred EEEECCCCCHHHHHH-HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCCCcEEEEc
Q 046623 57 VLELGAGAGLPGLTA-ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGEFDMVIMS 131 (218)
Q Consensus 57 vLDlG~G~G~~~~~l-~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~D~Iv~~ 131 (218)
=+|||.|.-.+--.+ +....-...++|++. .+..|+.|.+.++++..+.++.....+...... .+...||.+.+|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 368877654332222 333334788999999 999999999999998878777653322221111 123459999999
Q ss_pred ccccCCc----------------------chH---------HHHHHHH---HHhcCCCceEEEEEeec-cCChHHHHHHH
Q 046623 132 DVFYDPE----------------------EMV---------GLGKTLK---RVCGTGRHTVVWAVSEV-RTRTGDCLHEL 176 (218)
Q Consensus 132 ~~~~~~~----------------------~~~---------~~l~~~~---~lL~~gG~~~i~~~~~~-~~~~~~~~~~~ 176 (218)
+||+... ... .+...+. -.|+. ++-++.+.-. +..+.....++
T Consensus 186 PPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~--~IrwYT~MlGKKsslk~l~~kL 263 (419)
T KOG2912|consen 186 PPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRK--RIRWYTCMLGKKSSLKPLISKL 263 (419)
T ss_pred CchhhchhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhh--cceEEeeecccccccHHHHHHH
Confidence 9997430 011 1111111 12222 2345555544 44566777777
Q ss_pred HHhCCcEEEEEEccCCCCCCCceeEEEecCC
Q 046623 177 IMSQGFRVIELTCQLGGGCPEAFAVYELIPP 207 (218)
Q Consensus 177 ~~~~gf~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (218)
.+.|-..+.+....+.....+-..|.|.+.
T Consensus 264 -~e~gv~kv~itel~qGkTkRW~LaWSF~~~ 293 (419)
T KOG2912|consen 264 -REQGVTKVKITELVQGKTKRWGLAWSFMPI 293 (419)
T ss_pred -HHcCCceEEEEEeeccccceeeEEeeeccc
Confidence 888877777666666444455555877643
No 286
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.35 E-value=0.054 Score=41.76 Aligned_cols=128 Identities=15% Similarity=0.075 Sum_probs=67.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hH----H--HHHHHHHHhCCCCceEEEEeecCCCCccccccC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LL----P--GLINNVEANGLGGRVEVRELVWGSDDLSQLSEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~----~--~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 122 (218)
.++.+|+|+-.|.|.+...++.. ++ ..|.+.-..+ .. + .......+.. ..+++.+..+..... +.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~aN~e~~~~~~~A~~-----~p 120 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-YANVEVIGKPLVALG-----AP 120 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-hhhhhhhCCcccccC-----CC
Confidence 46789999999999999888643 33 3555543332 11 1 1111111111 111233222211111 33
Q ss_pred CCCcEEEEc--------ccccCCcchHHHHHHHHHHhcCCCceEEEEEee------------ccCChHHHHHHHHHhCCc
Q 046623 123 GEFDMVIMS--------DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSE------------VRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 123 ~~~D~Iv~~--------~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~------------~~~~~~~~~~~~~~~~gf 182 (218)
+..|+++.+ -.++ .....++...+.+.|||||.+++.-... .|-......... +..||
T Consensus 121 q~~d~~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~v-eaaGF 198 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEV-EAAGF 198 (238)
T ss_pred CcccccccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHH-Hhhcc
Confidence 445555542 2222 4667889999999999999444431110 112233445555 78898
Q ss_pred EEEEE
Q 046623 183 RVIEL 187 (218)
Q Consensus 183 ~~~~~ 187 (218)
...-.
T Consensus 199 kl~ae 203 (238)
T COG4798 199 KLEAE 203 (238)
T ss_pred eeeee
Confidence 87553
No 287
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.26 E-value=0.053 Score=43.95 Aligned_cols=100 Identities=23% Similarity=0.264 Sum_probs=57.0
Q ss_pred CeEEEECCC---CCHHHHHH-HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc--ccCCCCc-
Q 046623 55 KSVLELGAG---AGLPGLTA-ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL--SELGEFD- 126 (218)
Q Consensus 55 ~~vLDlG~G---~G~~~~~l-~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~D- 126 (218)
...|||||| .|.....+ ...+..+|+-+|.+| .+..++.-+..+.- .+..++.+|+.+...-.. ...+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 479999999 33333333 233456999999999 99888887766531 237899999876531000 0112233
Q ss_pred ----EEEEcccccCC---cchHHHHHHHHHHhcCCC
Q 046623 127 ----MVIMSDVFYDP---EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ----~Iv~~~~~~~~---~~~~~~l~~~~~lL~~gG 155 (218)
.+++..++|+. +++..++..+...|.||.
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS 184 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGS 184 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCc
Confidence 45555777664 568999999999999998
No 288
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.14 Score=43.24 Aligned_cols=109 Identities=17% Similarity=0.069 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-----CeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc---cc--c
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-----TRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS---QL--S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-----~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~--~ 120 (218)
.++.+|||+.+..|.=+..+.+... ..|++-|.++ -+..+......... .+..+...|....... .. .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCchh
Confidence 4788999999999987776643311 2799999998 66666666543322 2233333333222111 10 1
Q ss_pred cCCCCcEEEEcccccCCc-----------------------chHHHHHHHHHHhcCCCceEEEEE
Q 046623 121 ELGEFDMVIMSDVFYDPE-----------------------EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~-----------------------~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
....||-|++.-|+.... ..-.++.+..++||+|| .+++.+
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG-~lVYST 296 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGG-RLVYST 296 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCC-EEEEec
Confidence 345799999865554321 13457778889999999 444433
No 289
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.14 E-value=0.016 Score=48.73 Aligned_cols=76 Identities=20% Similarity=0.142 Sum_probs=55.7
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
..+++|+.||.|.+++.+...|..-+.++|+++ +++.-+.|+.. ..++..|........+... .+|+++.++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~-~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKS-DVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhcccc-CCCEEEeCC
Confidence 348999999999999999888877788999999 99888888643 3444445444333221111 799999999
Q ss_pred cccC
Q 046623 133 VFYD 136 (218)
Q Consensus 133 ~~~~ 136 (218)
|+..
T Consensus 76 PCQ~ 79 (328)
T COG0270 76 PCQD 79 (328)
T ss_pred CCcc
Confidence 9853
No 290
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.00 E-value=0.29 Score=43.14 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=52.5
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------------c-
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------------L- 119 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------------~- 119 (218)
..+++|+.||.|.+++.+...|...+.++|+++ +.+.-+.|+... ....+...|+.+..... .
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence 458999999999999999888876788999999 888877775211 11222333443332100 0
Q ss_pred ccCCCCcEEEEccccc
Q 046623 120 SELGEFDMVIMSDVFY 135 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~ 135 (218)
.....+|+++.++|+.
T Consensus 165 ~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 165 QHIPDHDVLLAGFPCQ 180 (467)
T ss_pred ccCCCCCEEEEcCCCC
Confidence 0123689999988884
No 291
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=0.058 Score=47.51 Aligned_cols=96 Identities=16% Similarity=0.100 Sum_probs=71.4
Q ss_pred CeEEEECCCCCHHHHHH---HHhC--CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 55 KSVLELGAGAGLPGLTA---ARLG--ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l---~~~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..|.=+|+|-|.+.... ++.. .-+++++|.+| |+-.++. .......++++++..|+..... +..+.|++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~a----p~eq~DI~ 443 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNA----PREQADII 443 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCC----chhhccch
Confidence 46888999999876654 2221 23799999999 7766554 4444455789999999877653 45789999
Q ss_pred EE--cccccCCcchHHHHHHHHHHhcCCC
Q 046623 129 IM--SDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 129 v~--~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
++ -..|.+.+.-.+.++.+.+.|||+|
T Consensus 444 VSELLGSFGDNELSPECLDG~q~fLkpdg 472 (649)
T KOG0822|consen 444 VSELLGSFGDNELSPECLDGAQKFLKPDG 472 (649)
T ss_pred HHHhhccccCccCCHHHHHHHHhhcCCCc
Confidence 95 2445556778899999999999999
No 292
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.83 E-value=0.44 Score=38.08 Aligned_cols=126 Identities=18% Similarity=0.117 Sum_probs=71.7
Q ss_pred ccccccchhHH-HHHHHHhc----CCCCCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc-hHHHHHHHHHHhCCC
Q 046623 30 LTGAWLWDSAL-ILAQFIST----HFDFQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP-LLPGLINNVEANGLG 101 (218)
Q Consensus 30 ~~g~~~w~~~~-~l~~~l~~----~~~~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~-~~~~a~~~~~~~~~~ 101 (218)
...+.+|.--. .|+.-+.. .+..++.+||-||+++|..-.+++.. |. .-|.++|.+. .-..+..-+++. +
T Consensus 128 kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--t 205 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--T 205 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--C
Confidence 56788898533 44444433 34478999999999999887777533 33 4689999888 544433222221 1
Q ss_pred CceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 102 GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 102 ~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+.+.++ -|..-... -...-.-.|+|++ ++.. ++....+.-++...||+||.+++.+
T Consensus 206 NiiPIi-EDArhP~K-YRmlVgmVDvIFa-Dvaq-pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 206 NIIPII-EDARHPAK-YRMLVGMVDVIFA-DVAQ-PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred Cceeee-ccCCCchh-eeeeeeeEEEEec-cCCC-chhhhhhhhhhhhhhccCCeEEEEE
Confidence 223333 23221110 0012245777776 3322 2334445566777899999666553
No 293
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.81 E-value=0.007 Score=51.69 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=60.6
Q ss_pred ccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCc-eEEEEe
Q 046623 32 GAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGR-VEVREL 109 (218)
Q Consensus 32 g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~-~~~~~~ 109 (218)
|...|.+-....+--...-..+|..|.|+.||.|.+++.+++.++ +|++-|.++ +++.++.|++.|.+.+. ++....
T Consensus 228 skVYWnsRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nm 306 (495)
T KOG2078|consen 228 SKVYWNSRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNM 306 (495)
T ss_pred ceEEeeccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecc
Confidence 445577533333322222235788999999999999999998875 999999999 99999999999988765 777776
Q ss_pred ecC
Q 046623 110 VWG 112 (218)
Q Consensus 110 d~~ 112 (218)
|..
T Consensus 307 da~ 309 (495)
T KOG2078|consen 307 DAK 309 (495)
T ss_pred cHH
Confidence 654
No 294
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.68 E-value=0.11 Score=47.99 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=71.5
Q ss_pred CCeEEEECCCCCHHHHHHH-Hh-------C-----CCeEEEecCcc-hHHHHHHHHHH-------------------hCC
Q 046623 54 NKSVLELGAGAGLPGLTAA-RL-------G-----ATRVVLTDVKP-LLPGLINNVEA-------------------NGL 100 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~-~~-------~-----~~~v~~~D~~~-~~~~a~~~~~~-------------------~~~ 100 (218)
.-+|+|+|-|+|.-.+.+. .. . ..+++++|..| ..+.+.+.... .++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999997555442 11 1 23889999866 44333332211 111
Q ss_pred C------C--ceEEEEeecCCCCccccccCCCCcEEEEcccccC---Cc-chHHHHHHHHHHhcCCCceEEEEEeeccCC
Q 046623 101 G------G--RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD---PE-EMVGLGKTLKRVCGTGRHTVVWAVSEVRTR 168 (218)
Q Consensus 101 ~------~--~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~---~~-~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~ 168 (218)
. + .+++..+|..+... + ....+|.++. |.|.. ++ -..+++..+++++++|| .+.++ .
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~-~--~~~~~d~~~l-D~FsP~~np~~W~~~~~~~l~~~~~~~~--~~~t~-----t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLP-Q--LDARADAWFL-DGFAPAKNPDMWSPNLFNALARLARPGA--TLATF-----T 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHH-h--ccccccEEEe-CCCCCccChhhccHHHHHHHHHHhCCCC--EEEEe-----e
Confidence 0 0 12233344332211 0 1246999998 44432 11 24789999999999999 33333 1
Q ss_pred hHHHHHHHHHhCCcEEEEEEc
Q 046623 169 TGDCLHELIMSQGFRVIELTC 189 (218)
Q Consensus 169 ~~~~~~~~~~~~gf~~~~~~~ 189 (218)
....++.-+...||.+.+.|-
T Consensus 207 ~a~~vr~~l~~~GF~v~~~~~ 227 (662)
T PRK01747 207 SAGFVRRGLQEAGFTVRKVKG 227 (662)
T ss_pred hHHHHHHHHHHcCCeeeecCC
Confidence 334455555899999988743
No 295
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.57 E-value=0.15 Score=42.81 Aligned_cols=94 Identities=20% Similarity=0.110 Sum_probs=59.9
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++++|+=.|+| .|..++.+++ .+ .+|+++|.++ ..+.+++- |. -.++... ....... -.+.+|+|
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GA---d~~i~~~-~~~~~~~--~~~~~d~i 233 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GA---DHVINSS-DSDALEA--VKEIADAI 233 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CC---cEEEEcC-CchhhHH--hHhhCcEE
Confidence 467888888887 4466777776 56 5999999999 88887654 21 2333322 1111111 12249999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEe
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
+..-+ ...+....++|+++|+++++-..
T Consensus 234 i~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 234 IDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 96322 45677778899999966666433
No 296
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.38 E-value=0.12 Score=45.44 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=72.0
Q ss_pred CeEEEECCCCCHHHHHHHHhCCC--eEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 55 KSVLELGAGAGLPGLTAARLGAT--RVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l~~~~~~--~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
..|+|..+|.|.++.++...+.- .|+-++-.+.+.. +-..|+ + -..-||.+.... -..+||+|-++.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRGL---I-G~yhDWCE~fsT---YPRTYDLlHA~~ 435 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRGL---I-GVYHDWCEAFST---YPRTYDLLHADG 435 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhccc---c-hhccchhhccCC---CCcchhheehhh
Confidence 46999999999999999776531 2333321112222 222232 1 122355433210 357899999987
Q ss_pred cccC---CcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccC
Q 046623 133 VFYD---PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQL 191 (218)
Q Consensus 133 ~~~~---~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~ 191 (218)
.|.. .-+++.++-+..|+|+|+| .+++-.. ..+-..++.+.....|+...+....
T Consensus 436 lfs~~~~rC~~~~illEmDRILRP~G--~~iiRD~--~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRPGG--WVIIRDT--VDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred hhhhhcccccHHHHHHHhHhhcCCCc--eEEEecc--HHHHHHHHHHHHhCcceEEEEecCC
Confidence 7754 3457899999999999999 4443222 2334445555466677766654433
No 297
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.17 E-value=0.42 Score=40.30 Aligned_cols=82 Identities=13% Similarity=0.011 Sum_probs=41.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH---------h---C-----CCeEEEecCcc-hHHHHHHHHHHh------CCCCceEE
Q 046623 51 DFQNKSVLELGAGAGLPGLTAAR---------L---G-----ATRVVLTDVKP-LLPGLINNVEAN------GLGGRVEV 106 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l~~---------~---~-----~~~v~~~D~~~-~~~~a~~~~~~~------~~~~~~~~ 106 (218)
..+.-+|+|+||.+|.-++.+.. . + .-+|+..|... -...+-+.+..+ .-..-+.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 34456899999999987776521 1 1 02788888766 444433333322 11111233
Q ss_pred EEeecCCCCccccccCCCCcEEEEcccccC
Q 046623 107 RELVWGSDDLSQLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 107 ~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~ 136 (218)
+.+.+-+ +..|.++.|++++...+|+
T Consensus 94 vpgSFy~----rLfP~~Svh~~~Ss~alHW 119 (334)
T PF03492_consen 94 VPGSFYG----RLFPSNSVHFGHSSYALHW 119 (334)
T ss_dssp EES-TTS------S-TT-EEEEEEES-TTB
T ss_pred cCchhhh----ccCCCCceEEEEEechhhh
Confidence 3344333 3348899999998887775
No 298
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.82 E-value=0.059 Score=37.38 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=25.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCc
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~ 85 (218)
+....+|||||+|.+.-.+.+.|. .=.|+|..
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 455799999999999888888776 56778854
No 299
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.73 E-value=0.61 Score=35.22 Aligned_cols=127 Identities=20% Similarity=0.119 Sum_probs=66.4
Q ss_pred ECCCCCHHHHHHHHh-C-CCeEEEecCcc---hHHH---HHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 60 LGAGAGLPGLTAARL-G-ATRVVLTDVKP---LLPG---LINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 60 lG~G~G~~~~~l~~~-~-~~~v~~~D~~~---~~~~---a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+|=|.=.++..+++. + +..++++-.+. ..+. +..|+....-.+..-....|..+..........+||.|+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 444555667777644 4 44666655544 2222 33454443211211222334444332111245789999998
Q ss_pred ccccC-------------CcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYD-------------PEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~-------------~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
.|... ...+..++..+.++|+++|.+.+-.... .++..=.+..+-++.|+...+.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~-~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG-QPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCccccHHHHHHhcCCEEEEE
Confidence 88754 1236778889999999999433333322 1111111222326678887665
No 300
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.39 E-value=0.15 Score=43.44 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=69.7
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHH-------hCC-CCceEEEEeec
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEA-------NGL-GGRVEVRELVW 111 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~-------~~~-~~~~~~~~~d~ 111 (218)
+...+.+....+++...|+|+|.|.+..+++.. +...-+|+++.+ .-+.+..+... .|. .+.+..+.+++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 444444433356789999999999988887644 445677777766 54444443332 233 34466777666
Q ss_pred CCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 112 GSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 112 ~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.+.... .......++|++++..++.+..-.+- .+.+-+++|.
T Consensus 261 ~~~~~v-~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gt 302 (419)
T KOG3924|consen 261 LDPKRV-TEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGT 302 (419)
T ss_pred CCHHHH-HHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcc
Confidence 544311 11346789999999887755444444 6777777766
No 301
>PRK13699 putative methylase; Provisional
Probab=94.39 E-value=0.17 Score=40.26 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=42.1
Q ss_pred cCCCCcEEEEcccccCC---------------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 121 ELGEFDMVIMSDVFYDP---------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~---------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
+++++|+|+.++|+... +-....+.++.++|||||.++++.. . .........+ .+.||.+.
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~-~--~~~~~~~~al-~~~GF~l~ 92 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG-W--NRVDRFMAAW-KNAGFSVV 92 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec-c--ccHHHHHHHH-HHCCCEEe
Confidence 67899999998887410 1135677888999999984333322 1 1233444444 78899877
Q ss_pred EEEcc
Q 046623 186 ELTCQ 190 (218)
Q Consensus 186 ~~~~~ 190 (218)
..-++
T Consensus 93 ~~IiW 97 (227)
T PRK13699 93 GHLVF 97 (227)
T ss_pred eEEEE
Confidence 65333
No 302
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.30 E-value=0.63 Score=39.99 Aligned_cols=83 Identities=12% Similarity=0.058 Sum_probs=45.2
Q ss_pred CCeEEEECCCCCHHHHHHHH---------h---C----CCeEEEecCcc-hHHHHHHHHHHhC------------CCCce
Q 046623 54 NKSVLELGAGAGLPGLTAAR---------L---G----ATRVVLTDVKP-LLPGLINNVEANG------------LGGRV 104 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~---------~---~----~~~v~~~D~~~-~~~~a~~~~~~~~------------~~~~~ 104 (218)
..+|+|+|||+|..++.+.. . + ..++..-|... -...+-+.+.... ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 55899999999977665411 1 1 14788888765 4444333332100 00111
Q ss_pred EEEEeecCCCCccccccCCCCcEEEEcccccCC
Q 046623 105 EVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 105 ~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~ 137 (218)
.|+. -+...-.....|.++.++++++..+|+.
T Consensus 144 ~f~~-gvpGSFY~RLfP~~Slh~~~Ss~slHWL 175 (386)
T PLN02668 144 YFAA-GVPGSFYRRLFPARSIDVFHSAFSLHWL 175 (386)
T ss_pred eEEE-ecCccccccccCCCceEEEEeeccceec
Confidence 2222 2222223334588899999988777653
No 303
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.18 Score=42.51 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=36.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---------CCCeEEEecCcc-hHHHHHHHHHHhC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARL---------GATRVVLTDVKP-LLPGLINNVEANG 99 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~---------~~~~v~~~D~~~-~~~~a~~~~~~~~ 99 (218)
.....++|+|+|.|.++..+.+. ...++..+|.|+ ..+..+++++...
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 44568999999999998876332 246899999999 7777777776543
No 304
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.07 E-value=0.45 Score=39.18 Aligned_cols=102 Identities=14% Similarity=-0.000 Sum_probs=70.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-CeEEEecCcc-hHHHHHHHHHHhCC---CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGA-TRVVLTDVKP-LLPGLINNVEANGL---GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~v~~~D~~~-~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
...+++|=+|.|-|......+++.. ..+..+|++. .++..++.++.-.. ..++....+|-.... +....++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl--~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL--EDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH--HHhccCCce
Confidence 3567899999999998888766632 5789999999 88888887765432 245777776533221 122468999
Q ss_pred EEEE--cccccCC--cchHHHHHHHHHHhcCCC
Q 046623 127 MVIM--SDVFYDP--EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~--~~~~~~~--~~~~~~l~~~~~lL~~gG 155 (218)
+|+. ++|.... .-.+.+...+.+.||++|
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dg 230 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDG 230 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCc
Confidence 9995 3443221 124667788889999999
No 305
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.89 E-value=0.11 Score=43.07 Aligned_cols=95 Identities=20% Similarity=0.114 Sum_probs=58.0
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEee-cCC--CCccccccCCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELV-WGS--DDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d-~~~--~~~~~~~~~~~~ 125 (218)
.++.+||=+|+| .|......| ..|+++|+.+|.++ .++.|++ + |...-......+ ... ...........+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKKQP 243 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhccccCC
Confidence 467899999999 566666655 56889999999999 9999887 3 322101111000 000 000001122347
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCc
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
|+.+-. .-.+..++.....++.+|.
T Consensus 244 d~~~dC------sG~~~~~~aai~a~r~gGt 268 (354)
T KOG0024|consen 244 DVTFDC------SGAEVTIRAAIKATRSGGT 268 (354)
T ss_pred CeEEEc------cCchHHHHHHHHHhccCCE
Confidence 877732 2336677778889999995
No 306
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.79 E-value=0.17 Score=42.92 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHH
Q 046623 41 ILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLI 92 (218)
Q Consensus 41 ~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~ 92 (218)
.+.+.+.+..+ .+-..++|+|+|.|.++..++-.....|.++|-|. +.+.|.
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHH
Confidence 44444444223 34468999999999999999744445999999998 665554
No 307
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=93.68 E-value=0.33 Score=39.02 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=70.9
Q ss_pred EEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccC
Q 046623 58 LELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYD 136 (218)
Q Consensus 58 LDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~ 136 (218)
+..-+||=.++..+.+. ..+.+++|.-+ ..+.+++++... .++.+...|-.........+..+=-+|++.+++..
T Consensus 62 l~~YPGSP~ia~~llR~-qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE-QDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp --EEE-HHHHHHHHS-T-TSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred cCcCCCCHHHHHHhCCc-cceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 45555554445455444 45899999999 888888887653 45778776644332222335566678999888888
Q ss_pred CcchHHHHHHHHHHhc--CCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 137 PEEMVGLGKTLKRVCG--TGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 137 ~~~~~~~l~~~~~lL~--~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
..++..+.+.+.+.++ +.|..++|-....+.....+.+.+ .+.+..
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l-~~~~~~ 185 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRAL-KALGIK 185 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHH-HHH-SS
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHH-HhcCCC
Confidence 8899999999998887 588778887766666677777777 555533
No 308
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.51 E-value=0.46 Score=39.88 Aligned_cols=95 Identities=28% Similarity=0.265 Sum_probs=53.3
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~ 127 (218)
.++.+||=.|+| .|..++.+++ .|+.+++++|.++ ..+.+++ .|.. .++ |..+...... ...+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD---KLV--NPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc---EEe--cCCcccHHHHhccCCCCCE
Confidence 467888888875 3444444454 4555799999888 7766653 3322 111 1111111111 12235898
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+- +... ...+..+.++++++|+++.+.
T Consensus 239 vid--~~G~----~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFE--VSGH----PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEE--CCCC----HHHHHHHHHHhhcCCEEEEEc
Confidence 874 2221 346677888999999555543
No 309
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.45 E-value=1 Score=40.24 Aligned_cols=102 Identities=27% Similarity=0.334 Sum_probs=59.7
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC----------ccc
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD----------LSQ 118 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------~~~ 118 (218)
.++.+|+=+|+| .|..++..+ ..|+ .|+++|.++ ..+.++. .| .++...+..+.. ...
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes----lG----A~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES----MG----AEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cC----CeEEEeccccccccccchhhhcchh
Confidence 468899999999 666777666 4566 899999998 7777654 23 222211111100 000
Q ss_pred -------c-cc-CCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 119 -------L-SE-LGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 119 -------~-~~-~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
. .. ...+|+++-.-.......+..+.+...+.++|||.++.+..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 00 14699999633221111233345889999999995544433
No 310
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.41 E-value=0.26 Score=36.86 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=65.9
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHH-HHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPG-LINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~-a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
+++.+=+|+..=..-..+.+.|+.++..+|.++ -++. .+..+ ..+...|+... . ..-.++||.+.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~-~--~~y~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKN-W--QKYAGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHH-H--HHhhccchhhhee
Confidence 457788888765555555678888999999886 3322 11111 01111111111 0 0134678888876
Q ss_pred ccccCC-----------cchHHHHHHHHHHhcCCCceEEEEE--------eeccCChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDP-----------EEMVGLGKTLKRVCGTGRHTVVWAV--------SEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~-----------~~~~~~l~~~~~lL~~gG~~~i~~~--------~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..+.+. .-....+..+.++||+||.+++-+. ...|-+-...+. |.-.||++...
T Consensus 71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~--mm~~gfe~i~t 143 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLA--MMFYGFEWIDT 143 (177)
T ss_pred chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHH--HHhCCcEEEee
Confidence 655432 1134456678889999994433321 122222333333 34689998887
No 311
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.36 E-value=4.7 Score=34.66 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=81.9
Q ss_pred EEcCeEEEEEeccCcCCCCccccccccccchhHH-HHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCc
Q 046623 7 EIAGNSIIIQELDNVCDSVTGRPLTGAWLWDSAL-ILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~-~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~ 85 (218)
+....++++...+.+-.+ ..+..||.+. .|.+.+... ... .+|+=++=.-|.++..++..+.. ...| +
T Consensus 5 ~~~~~~~~l~r~p~~~~~------~~l~awdaade~ll~~~~~~-~~~-~~~~i~nd~fGal~~~l~~~~~~--~~~d-s 73 (378)
T PRK15001 5 DNGFRSLTLQRFPATDDV------NPLQAWEAADEYLLQQLDDT-EIR-GPVLILNDAFGALSCALAEHKPY--SIGD-S 73 (378)
T ss_pred ccCCceeEEEECCCCCCc------CcccccccHHHHHHHHHhhc-ccC-CCEEEEcCchhHHHHHHHhCCCC--eeeh-H
Confidence 455588899888754322 2367788765 333333321 112 38999999999999999865442 1123 2
Q ss_pred c-hHHHHHHHHHHhCCCCc-eEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCc
Q 046623 86 P-LLPGLINNVEANGLGGR-VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRH 156 (218)
Q Consensus 86 ~-~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~ 156 (218)
- +....+.|++.|+++.. +++. +..+. ..+.+|+|++- ..-+.+..+..+..+.+++.+|+.
T Consensus 74 ~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~------~~~~~d~vl~~-~PK~~~~l~~~l~~l~~~l~~~~~ 137 (378)
T PRK15001 74 YISELATRENLRLNGIDESSVKFL--DSTAD------YPQQPGVVLIK-VPKTLALLEQQLRALRKVVTSDTR 137 (378)
T ss_pred HHHHHHHHHHHHHcCCCcccceee--ccccc------ccCCCCEEEEE-eCCCHHHHHHHHHHHHhhCCCCCE
Confidence 2 56668999999987532 3333 22221 33569999883 333345677788888999999993
No 312
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.17 E-value=0.81 Score=37.14 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=71.3
Q ss_pred hhHHHHHHHHhc-CC-------CCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEE
Q 046623 37 DSALILAQFIST-HF-------DFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRE 108 (218)
Q Consensus 37 ~~~~~l~~~l~~-~~-------~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~ 108 (218)
.|+..|.+.+.. .+ ..++...+|+|+..|..+-.+.+.+- .|+++|-.++.+.+... ..++...
T Consensus 187 RStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~dt-------g~v~h~r 258 (358)
T COG2933 187 RSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMDT-------GQVTHLR 258 (358)
T ss_pred hhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhcc-------cceeeee
Confidence 466667666655 11 24677899999999999999988865 89999977655544332 4577777
Q ss_pred eecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCC
Q 046623 109 LVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG 154 (218)
Q Consensus 109 ~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g 154 (218)
.|-....+ ...+.|..+|.-+ +.+..+-..+.++|..|
T Consensus 259 ~DGfk~~P----~r~~idWmVCDmV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 259 EDGFKFRP----TRSNIDWMVCDMV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred ccCccccc----CCCCCceEEeehh----cCcHHHHHHHHHHHHcc
Confidence 66555443 3578999999544 55666667777777754
No 313
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.01 E-value=2.2 Score=33.55 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=47.6
Q ss_pred CCeEEEECCCCCH--HHHHH--H-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 54 NKSVLELGAGAGL--PGLTA--A-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 54 ~~~vLDlG~G~G~--~~~~l--~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
-+.+++..|+.|. .++.| | +.-..+++++-.++ .....++.+...+..+.++|+.++-..... ..-...|+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~---~~~~~iDF 118 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM---PGLKGIDF 118 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH---hhccCCCE
Confidence 4579999776442 34443 3 33345888888888 777777787777776667888754211111 13367999
Q ss_pred EEE
Q 046623 128 VIM 130 (218)
Q Consensus 128 Iv~ 130 (218)
++.
T Consensus 119 ~vV 121 (218)
T PF07279_consen 119 VVV 121 (218)
T ss_pred EEE
Confidence 998
No 314
>PTZ00357 methyltransferase; Provisional
Probab=92.98 E-value=0.6 Score=42.91 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=64.6
Q ss_pred eEEEECCCCCHHHHHH---H-HhCC-CeEEEecCcc-hHHHHHHHH-HHhCC-------CCceEEEEeecCCCCccc---
Q 046623 56 SVLELGAGAGLPGLTA---A-RLGA-TRVVLTDVKP-LLPGLINNV-EANGL-------GGRVEVRELVWGSDDLSQ--- 118 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l---~-~~~~-~~v~~~D~~~-~~~~a~~~~-~~~~~-------~~~~~~~~~d~~~~~~~~--- 118 (218)
.|+=+|+|-|.+--.+ + ..+. .+++++|.|+ ++.....+. ....+ .+.|+++..|+.......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999765543 2 2232 3899999996 554443332 11122 245899999987764311
Q ss_pred -c---ccCCCCcEEEE--cccccCCcchHHHHHHHHHHhcC
Q 046623 119 -L---SELGEFDMVIM--SDVFYDPEEMVGLGKTLKRVCGT 153 (218)
Q Consensus 119 -~---~~~~~~D~Iv~--~~~~~~~~~~~~~l~~~~~lL~~ 153 (218)
. ...+++|+||+ -..|.+.+...+.|+.+.+.||+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 0 01137999996 45566667788899999999986
No 315
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.69 E-value=0.79 Score=35.40 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=74.8
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHH----hC-CCeEEEecCcc-hHHHHHHHHHHhCCCCc
Q 046623 30 LTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAAR----LG-ATRVVLTDVKP-LLPGLINNVEANGLGGR 103 (218)
Q Consensus 30 ~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~----~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~ 103 (218)
+-|...|.+.+.+..+-.-....++..|+|+|+-.|..++..|. .| ..+|.++|++- .+..+... . .+
T Consensus 46 wmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~ 119 (237)
T COG3510 46 WMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PD 119 (237)
T ss_pred EecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CC
Confidence 34556677777666653322335778999999999988877643 23 24899999886 44332211 1 55
Q ss_pred eEEEEeecCCCCcc-cc--ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 104 VEVRELVWGSDDLS-QL--SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 104 ~~~~~~d~~~~~~~-~~--~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+.++.++-.+.... +. ...+.--+.++-+.-|+.+..-+-++.+.++|..|-
T Consensus 120 i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~ 174 (237)
T COG3510 120 ILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGD 174 (237)
T ss_pred eEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCc
Confidence 88998776554422 11 122233444455666666666677788888998887
No 316
>PRK11524 putative methyltransferase; Provisional
Probab=92.61 E-value=0.29 Score=40.28 Aligned_cols=77 Identities=5% Similarity=-0.090 Sum_probs=45.3
Q ss_pred eEEEEeecCCCCccccccCCCCcEEEEcccccCC----------------cchHHHHHHHHHHhcCCCceEEEEEeeccC
Q 046623 104 VEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP----------------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRT 167 (218)
Q Consensus 104 ~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~----------------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~ 167 (218)
..++.+|..+... ..+.+++|+|++++|+... ..+..++..+.++||+||.++++.. . .
T Consensus 9 ~~i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~--~ 83 (284)
T PRK11524 9 KTIIHGDALTELK--KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS-T--E 83 (284)
T ss_pred CEEEeccHHHHHH--hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-c--h
Confidence 4566666554321 1156789999998887421 1125688899999999995444422 1 1
Q ss_pred ChHHHHHHHHHhCCcEEEEE
Q 046623 168 RTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 168 ~~~~~~~~~~~~~gf~~~~~ 187 (218)
.. ..+..+ .+.+|.....
T Consensus 84 ~~-~~~~~~-~~~~f~~~~~ 101 (284)
T PRK11524 84 NM-PFIDLY-CRKLFTIKSR 101 (284)
T ss_pred hh-hHHHHH-HhcCcceEEE
Confidence 12 233334 4667766554
No 317
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.02 E-value=2 Score=36.37 Aligned_cols=99 Identities=23% Similarity=0.154 Sum_probs=60.6
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-c-c-CCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-S-E-LGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~-~-~~~~ 125 (218)
.++.+|+=+||| -|.++..++ ..|+.+|+.+|.++ -++.|++... .+.....-.+...... . . ...+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g-------~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG-------ADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC-------CeEeecCccccHHHHHHHHhCCCCC
Confidence 344589999999 577766665 55778999999999 8888876431 1111111010100000 1 1 1369
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEe
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVS 163 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~ 163 (218)
|+++= +-. ....+..+.++++++|.+.++...
T Consensus 240 D~vie--~~G----~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 240 DVVIE--AVG----SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CEEEE--CCC----CHHHHHHHHHHhcCCCEEEEEecc
Confidence 99983 211 345788888999999966665444
No 318
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.77 E-value=0.65 Score=36.90 Aligned_cols=110 Identities=22% Similarity=0.164 Sum_probs=64.1
Q ss_pred hHHHHHHHHhcCCCCCC-CeEEEECCCCCHHHHHHHHh--C------C--CeEEEecCcchHHHHHHHHHHhCCCCceEE
Q 046623 38 SALILAQFISTHFDFQN-KSVLELGAGAGLPGLTAARL--G------A--TRVVLTDVKPLLPGLINNVEANGLGGRVEV 106 (218)
Q Consensus 38 ~~~~l~~~l~~~~~~~~-~~vLDlG~G~G~~~~~l~~~--~------~--~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~ 106 (218)
+++.|.+.=.+...+++ .+++|+.+..|.++..+++. . . ..++++|+.++... ..+..
T Consensus 25 SAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI-----------~GV~q 93 (294)
T KOG1099|consen 25 SAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI-----------EGVIQ 93 (294)
T ss_pred hHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc-----------CceEE
Confidence 33444433222233444 58999999999999999643 1 1 13999998873221 22666
Q ss_pred EEeecCCCCccc----cccCCCCcEEEEcccc-----cCCcc------hHHHHHHHHHHhcCCCceE
Q 046623 107 RELVWGSDDLSQ----LSELGEFDMVIMSDVF-----YDPEE------MVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 107 ~~~d~~~~~~~~----~~~~~~~D~Iv~~~~~-----~~~~~------~~~~l~~~~~lL~~gG~~~ 158 (218)
+.+|+......+ ++..++.|+|++.... |..+. +.+.+.-...+|+|||.++
T Consensus 94 lq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 94 LQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred eecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 777776554222 2234689999985332 22222 2233344456889999443
No 319
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=91.75 E-value=0.21 Score=41.56 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=49.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-c-cCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-S-ELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~-~~~~~D~ 127 (218)
.++..++|.--|.|..+..+.+ .+..+++++|.++ +++.+++++... .+++.++..++.+...... . ...++|-
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~dg 96 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVDG 96 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccCE
Confidence 5677999999999999998864 4557999999999 999998877644 3567777766554321111 1 2246777
Q ss_pred EEEc
Q 046623 128 VIMS 131 (218)
Q Consensus 128 Iv~~ 131 (218)
|++.
T Consensus 97 iL~D 100 (310)
T PF01795_consen 97 ILFD 100 (310)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7753
No 320
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.19 E-value=2.5 Score=36.14 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC--Ccc---ccccCC
Q 046623 52 FQNKSVLELGAGA-GLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD--DLS---QLSELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G~-G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~---~~~~~~ 123 (218)
.++.+||..|||. |.....+++. |..++++++.++ ..+.+++.. + ..++. .... ... ......
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~----~~vi~--~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G----AETIN--FEEVDDVVEALRELTGGR 253 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C----cEEEc--CCcchHHHHHHHHHcCCC
Confidence 4677999999875 6666666644 444699999988 777766542 1 12221 1111 001 111223
Q ss_pred CCcEEEEccc---------------ccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 124 EFDMVIMSDV---------------FYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~---------------~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+|+|+-.-. +....+....+..+.++++++|.++.+
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 6898874210 001123356788889999999955554
No 321
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=91.08 E-value=0.74 Score=32.99 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCCcEEEEcccccCCcc----hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEcc
Q 046623 123 GEFDMVIMSDVFYDPEE----MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQ 190 (218)
Q Consensus 123 ~~~D~Iv~~~~~~~~~~----~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~ 190 (218)
..+|.|+. |.|..... ..+++..+.+++++|| .+.++ .....++..+.+.||.+.+.|-.
T Consensus 49 ~~~Da~yl-DgFsP~~nPelWs~e~~~~l~~~~~~~~--~l~Ty-----s~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 49 ARFDAWYL-DGFSPAKNPELWSEELFKKLARLSKPGG--TLATY-----SSAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp T-EEEEEE--SS-TTTSGGGSSHHHHHHHHHHEEEEE--EEEES-------BHHHHHHHHHCTEEEEEEE-S
T ss_pred ccCCEEEe-cCCCCcCCcccCCHHHHHHHHHHhCCCc--EEEEe-----echHHHHHHHHHcCCEEEEcCCC
Confidence 67999998 44433222 4789999999999998 32222 12234555558999999998744
No 322
>PRK08324 short chain dehydrogenase; Validated
Probab=90.95 E-value=3.4 Score=38.37 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=58.5
Q ss_pred cCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHH
Q 046623 21 VCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNV 95 (218)
Q Consensus 21 ~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~ 95 (218)
.|.+.+..+......|+..+.-..........+++++|=.|++. .++..+ ++.|. +|+.+|.++ ..+.+...+
T Consensus 389 ~~~~l~~~~~f~i~~~~~e~a~l~~~~~~~~l~gk~vLVTGasg-gIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l 466 (681)
T PRK08324 389 RYEPLSEQEAFDIEYWSLEQAKLQRMPKPKPLAGKVALVTGAAG-GIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAEL 466 (681)
T ss_pred CccCCChhhhcceeeehhhhhhhhcCCCCcCCCCCEEEEecCCC-HHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHH
Confidence 35555544444444565444322211111224677888777643 444433 45565 899999988 666555443
Q ss_pred HHhCCCCceEEEEeecCCCCcc-cc-----ccCCCCcEEEEccc
Q 046623 96 EANGLGGRVEVRELVWGSDDLS-QL-----SELGEFDMVIMSDV 133 (218)
Q Consensus 96 ~~~~~~~~~~~~~~d~~~~~~~-~~-----~~~~~~D~Iv~~~~ 133 (218)
... ..+.++.+|+.+...- .. ...+.+|+|+.+..
T Consensus 467 ~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 467 GGP---DRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred hcc---CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 322 3477888887654311 10 11247899997654
No 323
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.92 E-value=0.88 Score=36.65 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=32.1
Q ss_pred CCeEEEECCCCCHHHHHHHHh---------CCCeEEEecCcc-hHHHHHHHHHH
Q 046623 54 NKSVLELGAGAGLPGLTAARL---------GATRVVLTDVKP-LLPGLINNVEA 97 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~---------~~~~v~~~D~~~-~~~~a~~~~~~ 97 (218)
..+|+|+|+|+|.++..+... ...+++.+|.|+ ..+..++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999998887432 125899999999 87777777654
No 324
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=90.63 E-value=0.46 Score=38.29 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred CCeEEEECCCCCHHHHHHHH----hC--CCeEEEecCc--------------------------c-hHHHHHHHHHHhCC
Q 046623 54 NKSVLELGAGAGLPGLTAAR----LG--ATRVVLTDVK--------------------------P-LLPGLINNVEANGL 100 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~----~~--~~~v~~~D~~--------------------------~-~~~~a~~~~~~~~~ 100 (218)
+..|+|+||--|..++.++. .+ .+++++.|.= . ..+..++|+...++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 44899999999987776532 22 2467766621 1 23444555554443
Q ss_pred -CCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh
Q 046623 101 -GGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS 179 (218)
Q Consensus 101 -~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~ 179 (218)
.+++.++.+.+.+..... +.+++-++-+.--+| +.....++.+...|.||| +|++.........+.+.....+
T Consensus 155 ~~~~v~~vkG~F~dTLp~~--p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GG--iIi~DDY~~~gcr~AvdeF~~~ 228 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDA--PIERIALLHLDCDLY--ESTKDALEFLYPRLSPGG--IIIFDDYGHPGCRKAVDEFRAE 228 (248)
T ss_dssp SSTTEEEEES-HHHHCCC---TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEE--EEEESSTTTHHHHHHHHHHHHH
T ss_pred CcccEEEECCcchhhhccC--CCccEEEEEEeccch--HHHHHHHHHHHhhcCCCe--EEEEeCCCChHHHHHHHHHHHH
Confidence 356899988775443211 233444444433333 345677888888999999 4444322222234445555456
Q ss_pred CCcEE
Q 046623 180 QGFRV 184 (218)
Q Consensus 180 ~gf~~ 184 (218)
.|...
T Consensus 229 ~gi~~ 233 (248)
T PF05711_consen 229 HGITD 233 (248)
T ss_dssp TT--S
T ss_pred cCCCC
Confidence 66544
No 325
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.14 E-value=13 Score=33.15 Aligned_cols=151 Identities=10% Similarity=0.024 Sum_probs=83.4
Q ss_pred CCCeEEEECCCCCHHHHHHHH---hC--CCeEEEecCcc-hHHHHHHHHHHhCCCC-ceEEEEeecCCCCccccccCCCC
Q 046623 53 QNKSVLELGAGAGLPGLTAAR---LG--ATRVVLTDVKP-LLPGLINNVEANGLGG-RVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~---~~--~~~v~~~D~~~-~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
++..+.|..||+|.+.+...+ .+ ...+++.+.+. +...++.|+...+... ......+|-.... ......+|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~--d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTK--EWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCc--cccccccC
Confidence 456899999999988776532 12 13689999999 8888998877665432 1222222221111 11134579
Q ss_pred cEEEEcccccC-C--c----------------------chHHHHHHHHHHhcCCCceEEEEEeecc--CC-hHHHHHHHH
Q 046623 126 DMVIMSDVFYD-P--E----------------------EMVGLGKTLKRVCGTGRHTVVWAVSEVR--TR-TGDCLHELI 177 (218)
Q Consensus 126 D~Iv~~~~~~~-~--~----------------------~~~~~l~~~~~lL~~gG~~~i~~~~~~~--~~-~~~~~~~~~ 177 (218)
|.|++++|+.. + . .-..++......|++||+..++...... .. .......+
T Consensus 295 D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~gvl~~~~~e~~ir~~l- 373 (501)
T TIGR00497 295 EVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPGILYREGKEQTIRKYL- 373 (501)
T ss_pred CEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCCcccCCCchHHHHHHH-
Confidence 99999887632 1 0 1123555566788999966666443321 11 22334444
Q ss_pred HhCCcEEEEE--EccCCCCCCCceeEEEecC
Q 046623 178 MSQGFRVIEL--TCQLGGGCPEAFAVYELIP 206 (218)
Q Consensus 178 ~~~gf~~~~~--~~~~~~~~~~~~~l~~~~~ 206 (218)
-..+...-.+ |.....+......++-+.+
T Consensus 374 L~~~~~~avi~Lp~~~f~~t~i~~~I~~~~k 404 (501)
T TIGR00497 374 VDQNFVDAVIQLPSNLFSTTSIATSILVLKK 404 (501)
T ss_pred HHcCcEEEEEeCCccccCCCCCCEEEEEEeC
Confidence 3444443333 4444434334445544443
No 326
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=90.04 E-value=0.2 Score=40.61 Aligned_cols=122 Identities=29% Similarity=0.226 Sum_probs=68.0
Q ss_pred ccccccccchhHHHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc----hHHHHHHHHHHhCCCC
Q 046623 28 RPLTGAWLWDSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP----LLPGLINNVEANGLGG 102 (218)
Q Consensus 28 ~~~~g~~~w~~~~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~a~~~~~~~~~~~ 102 (218)
-..+|.-+|++.+.|..++.+.++ .++.++.++|||.+..+...++.+. .+...+... .++....+........
T Consensus 64 ~~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~-~v~~~~~~~~~~~~l~~~~~~~~~~~~~~ 142 (262)
T KOG2497|consen 64 LARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPD-CVVTLDSLRCAGLLLEEIILLSRDLSLEV 142 (262)
T ss_pred HHHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhccc-ceecCCccCcHHHHHHHHHhccccccccc
Confidence 345678899999999999998766 6778999999999988855666643 333333222 2222222221111110
Q ss_pred ceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHh
Q 046623 103 RVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVC 151 (218)
Q Consensus 103 ~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL 151 (218)
.-..-..++..............|+++..++.|. .....+++.+..+|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 143 RDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred cccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 0000000000000000001234899999899887 66666666666644
No 327
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.82 E-value=0.95 Score=35.18 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=33.1
Q ss_pred CcEEEEcccccCCcc-------------------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCC-cEE
Q 046623 125 FDMVIMSDVFYDPEE-------------------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQG-FRV 184 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~-------------------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~g-f~~ 184 (218)
+|+|+.++|+....+ +...+..+.++|+|+|.+++.+....... .....+.+..| |..
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~--~~~~~~~~~~g~~~~ 78 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAG--FLFELALEIFGGFFL 78 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECT--HHHHHHHHHHTT-EE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhH--HHHHHHHHHhhhhhe
Confidence 377888777654322 57788888999999995555544333222 12222223345 877
Q ss_pred EEEE
Q 046623 185 IELT 188 (218)
Q Consensus 185 ~~~~ 188 (218)
...-
T Consensus 79 ~~~i 82 (231)
T PF01555_consen 79 RNEI 82 (231)
T ss_dssp EEEE
T ss_pred eccc
Confidence 6653
No 328
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.46 E-value=1.3 Score=38.08 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=37.3
Q ss_pred ccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHH
Q 046623 34 WLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGL 91 (218)
Q Consensus 34 ~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a 91 (218)
..|+......+.|.- .++++||-|.+| |.-.+.....++++|++||+|+ .....
T Consensus 19 ~~WEDp~vD~~aL~i---~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 19 QCWEDPRVDMEALNI---GPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALL 73 (380)
T ss_pred cccCCcHHHHHHhCC---CCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHH
Confidence 358887777776654 577899999665 4444444455567999999999 54443
No 329
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.38 E-value=2.1 Score=32.81 Aligned_cols=130 Identities=19% Similarity=0.223 Sum_probs=57.6
Q ss_pred eEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc-hHHHHHHHH------------HHhCCCCceEEEEeecCCCCccccc
Q 046623 56 SVLELGAG-AGL-PGLTAARLGATRVVLTDVKP-LLPGLINNV------------EANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 56 ~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~------------~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+|-=+|.| .|. .+..++..|. +|+++|+++ .++...+.. ++..-..++.+. .|+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~------- 72 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEE------- 72 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHH-------
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhh-------
Confidence 34456666 343 2334467776 999999998 666543221 000000112221 11110
Q ss_pred cCCCCcEEEEc-ccccCC------cchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhC-----CcEEEEEE
Q 046623 121 ELGEFDMVIMS-DVFYDP------EEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQ-----GFRVIELT 188 (218)
Q Consensus 121 ~~~~~D~Iv~~-~~~~~~------~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~-----gf~~~~~~ 188 (218)
.....|+++.. +..... ....+.++.+.+.++++. ++++-++-.--..++.+..++++. .|.+...|
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~-lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P 151 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGD-LVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP 151 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCE-EEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcc-eEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence 12347777753 322221 225777888888999854 444433333333444565555543 36676667
Q ss_pred ccCCCCC
Q 046623 189 CQLGGGC 195 (218)
Q Consensus 189 ~~~~~~~ 195 (218)
....+|.
T Consensus 152 Erl~~G~ 158 (185)
T PF03721_consen 152 ERLREGR 158 (185)
T ss_dssp ----TTS
T ss_pred CccCCCC
Confidence 7777654
No 330
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.37 E-value=1.6 Score=35.82 Aligned_cols=48 Identities=25% Similarity=0.512 Sum_probs=41.7
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
...++..|||..+|+|..++.+...+. +.+++|+++ .++.+.+.+...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 457889999999999999999988865 899999999 888888887654
No 331
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.24 E-value=2.5 Score=35.58 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=50.7
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHh-CCCeEEEecC---cc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAARL-GATRVVLTDV---KP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~~D~---~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 125 (218)
.++.+||=+|+| .|..+..+++. |+ ++++++. ++ ..+.++ ..|. +++ +..+....+......+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~----~~Ga----~~v--~~~~~~~~~~~~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE----ELGA----TYV--NSSKTPVAEVKLVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH----HcCC----EEe--cCCccchhhhhhcCCC
Confidence 367789988875 34455555544 55 8999986 34 444433 3332 222 1111111001123468
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+|+- +... ...+....++++++|.++++.
T Consensus 240 d~vid--~~g~----~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIE--ATGV----PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEE--CcCC----HHHHHHHHHHccCCcEEEEEe
Confidence 98884 2211 246777889999999555443
No 332
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=5 Score=32.46 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCC-C
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGE-F 125 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~ 125 (218)
.+.+.+|+|+|+..-+..+ +..+ ..+++.+|++. .+......+...-..-.+.-+.+|++.... +. +..+ -
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La-~~-~~~~~R 155 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALA-EL-PRGGRR 155 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHh-cc-cCCCeE
Confidence 4679999999988655544 2222 25899999999 665544443332211113444444432211 11 2111 1
Q ss_pred cEEEEcccccC--CcchHHHHHHHHHHhcCCC
Q 046623 126 DMVIMSDVFYD--PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 126 D~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG 155 (218)
=.++....+.+ +.+...++..++..++||-
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcc
Confidence 12334444543 4678889999999999998
No 333
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.01 E-value=2.7 Score=30.11 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=48.6
Q ss_pred HHHHHhcCCCCCCCeEEEECCCCC-HHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccc
Q 046623 42 LAQFISTHFDFQNKSVLELGAGAG-LPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 42 l~~~l~~~~~~~~~~vLDlG~G~G-~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 120 (218)
+++++... ....+|+|+|-|.= ..+..+++.|. .|+++|+++. +.. . .+.++.-|+.+....
T Consensus 4 ~a~~ia~~--~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~----g~~~v~DDif~P~l~--- 66 (127)
T PF03686_consen 4 FAEYIARL--NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-E----GVNFVVDDIFNPNLE--- 66 (127)
T ss_dssp HHHHHHHH--S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HH---
T ss_pred HHHHHHHh--CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-c----CcceeeecccCCCHH---
Confidence 55565531 23449999999965 46667788885 9999999874 111 1 266777677665431
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhc
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCG 152 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~ 152 (218)
.=...|+|.+-.|. .+++..+..+++.+.
T Consensus 67 iY~~a~lIYSiRPP---~El~~~il~lA~~v~ 95 (127)
T PF03686_consen 67 IYEGADLIYSIRPP---PELQPPILELAKKVG 95 (127)
T ss_dssp HHTTEEEEEEES-----TTSHHHHHHHHHHHT
T ss_pred HhcCCcEEEEeCCC---hHHhHHHHHHHHHhC
Confidence 12578999986663 445555555555543
No 334
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=88.98 E-value=3.6 Score=33.40 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=56.8
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCC--CCceEEEEeecCCCCccccccC-----CCCc
Q 046623 54 NKSVLELGAGAGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGL--GGRVEVRELVWGSDDLSQLSEL-----GEFD 126 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~-----~~~D 126 (218)
...|+.||||-=.-...+......+++=+|....++.-++.+...+. ..+..++..|+. ..+.+.... ...-
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAPT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCCe
Confidence 34799999996554444422111245555544444444455554332 356788888887 332211111 2233
Q ss_pred EEEEcccccC--CcchHHHHHHHHHHhcCCC
Q 046623 127 MVIMSDVFYD--PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 127 ~Iv~~~~~~~--~~~~~~~l~~~~~lL~~gG 155 (218)
++++-.++.+ .+...+++..+.++..||+
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs 191 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGS 191 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCc
Confidence 5555444433 4567889999988888887
No 335
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.93 E-value=7.7 Score=31.54 Aligned_cols=76 Identities=21% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHhC------CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 42 LAQFISTHFD-FQNKSVLELGAGAGLPGLTAARLG------ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 42 l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~------~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
|...+.+... .++..++|+|||.|.++..++..- ...++.+|... -.+ .-..+........+.=+..|+.+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeec
Confidence 4444444222 456699999999999999986442 34789999866 332 22222222211235555566666
Q ss_pred CCccc
Q 046623 114 DDLSQ 118 (218)
Q Consensus 114 ~~~~~ 118 (218)
..+..
T Consensus 85 l~l~~ 89 (259)
T PF05206_consen 85 LDLSK 89 (259)
T ss_pred cchhh
Confidence 65443
No 336
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.92 E-value=3.2 Score=34.83 Aligned_cols=91 Identities=8% Similarity=-0.096 Sum_probs=52.6
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH--hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR--LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~--~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+||=+||| .|..++.+++ .++.+++++|.++ .++.++. .+. .... .+. . ....+|+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~-~----~~~g~d~ 225 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDI-P----EDLAVDH 225 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhh-h----hccCCcE
Confidence 467899999875 3444444444 3556899999988 7776653 111 1111 010 1 1124888
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+= +... ......+....++++++|+++++.
T Consensus 226 viD--~~G~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 226 AFE--CVGG-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEE--CCCC-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 883 2221 112456777888999999655554
No 337
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=88.85 E-value=12 Score=30.90 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=64.5
Q ss_pred CCCCeEEEECCCCCH-HHH--HHHHhCCCeEEEecCcc-hHHHHHHHHHHhCC-CCceEEEEeecCCCCccccccCCCCc
Q 046623 52 FQNKSVLELGAGAGL-PGL--TAARLGATRVVLTDVKP-LLPGLINNVEANGL-GGRVEVRELVWGSDDLSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~-~~~--~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~D 126 (218)
.+++++|=+|+| |. .++ .++..|+.+++.++.++ ..+.+++..+...- ...+.+...|+.+...- ......+|
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~-~~~~~~~D 201 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKL-KAEIASSD 201 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHH-HhhhccCC
Confidence 567889999996 42 222 23466776799988874 33333332222110 01233444555432110 00124579
Q ss_pred EEEEcccccCCcchH-HHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 127 MVIMSDVFYDPEEMV-GLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~-~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+|+.+-+....+... ..+. -...+.++. ++....+.+....+++.. ++.|.....
T Consensus 202 ilINaTp~Gm~~~~~~~~~~-~~~~l~~~~---~v~D~vY~P~~T~ll~~A-~~~G~~~~~ 257 (289)
T PRK12548 202 ILVNATLVGMKPNDGETNIK-DTSVFRKDL---VVADTVYNPKKTKLLEDA-EAAGCKTVG 257 (289)
T ss_pred EEEEeCCCCCCCCCCCCCCC-cHHhcCCCC---EEEEecCCCCCCHHHHHH-HHCCCeeeC
Confidence 999877665322111 1110 014566655 233333344556777777 888876543
No 338
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.77 E-value=4.4 Score=27.95 Aligned_cols=83 Identities=24% Similarity=0.189 Sum_probs=47.1
Q ss_pred CCCCHHHHHHH---HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC
Q 046623 62 AGAGLPGLTAA---RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 62 ~G~G~~~~~l~---~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~ 137 (218)
||.|..+..++ ..+...++.+|.++ ..+.++.. + +.++.+|..+...-....-.+++.+++... .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---~ 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILTD---D 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEESS---S
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEccC---C
Confidence 56666776663 22334899999998 77665533 2 678888887665322223467888887432 1
Q ss_pred cchHHHHHHHHHHhcCCC
Q 046623 138 EEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 138 ~~~~~~l~~~~~lL~~gG 155 (218)
+...-.+....+-+.|..
T Consensus 73 d~~n~~~~~~~r~~~~~~ 90 (116)
T PF02254_consen 73 DEENLLIALLARELNPDI 90 (116)
T ss_dssp HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 222223333445556655
No 339
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=88.49 E-value=2.1 Score=34.37 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=28.0
Q ss_pred CCCCeEEEECCC-CCHHHHHH-HHhCCCeEEEecCcc
Q 046623 52 FQNKSVLELGAG-AGLPGLTA-ARLGATRVVLTDVKP 86 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l-~~~~~~~v~~~D~~~ 86 (218)
++..+|+=+|.| .|.+...+ ++.|..+++.+|.+.
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 456688889987 88888765 788888999998776
No 340
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.73 E-value=11 Score=29.26 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=45.3
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----cc
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~ 121 (218)
++++||=.|++.| ++..+ ++.|. +|++++.++ ..+.+.+..... .++.++.+|+.+...-. . ..
T Consensus 4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678988888644 33333 44555 899999887 666554444332 24778888887543110 0 01
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+.+|.++.+..
T Consensus 79 ~~~id~ii~~ag 90 (238)
T PRK05786 79 LNAIDGLVVTVG 90 (238)
T ss_pred hCCCCEEEEcCC
Confidence 245788886543
No 341
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=87.73 E-value=11 Score=29.90 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=45.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD 115 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 115 (218)
....-|.+||.|.|.....+...+..+...+|+++ +..-++--.++.. .+..+...|.....
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceeh
Confidence 45667999999999999999888888899999998 7766554444322 34556666665444
No 342
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.41 E-value=0.99 Score=31.88 Aligned_cols=84 Identities=23% Similarity=0.218 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc---ccCCCCcEEEEcccccCC
Q 046623 63 GAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL---SELGEFDMVIMSDVFYDP 137 (218)
Q Consensus 63 G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~~~D~Iv~~~~~~~~ 137 (218)
|.|..++.+++.-..+|+++|.++ ..+.+++. |.. .+ .+..+.... +. .....+|+|+- +..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~---~~--~~~~~~~~~~~i~~~~~~~~~d~vid--~~g-- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GAD---HV--IDYSDDDFVEQIRELTGGRGVDVVID--CVG-- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TES---EE--EETTTSSHHHHHHHHTTTSSEEEEEE--SSS--
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----ccc---cc--ccccccccccccccccccccceEEEE--ecC--
Confidence 346777777655337999999998 77776543 321 22 233333211 11 12247999884 221
Q ss_pred cchHHHHHHHHHHhcCCCceEEEE
Q 046623 138 EEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 138 ~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
-...++...++++++|+++++.
T Consensus 68 --~~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 --SGDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp --SHHHHHHHHHHEEEEEEEEEES
T ss_pred --cHHHHHHHHHHhccCCEEEEEE
Confidence 2578888999999999555553
No 343
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.69 E-value=10 Score=31.57 Aligned_cols=88 Identities=15% Similarity=-0.022 Sum_probs=51.0
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.+||=.|+| .|..+..+++ .|+ ++++++.++ ..+.+++ .|... ++. ..+. ..+.+|++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~------~~~~~d~~ 227 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT------PPEPLDAA 227 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc------CcccceEE
Confidence 567899988874 3334444454 454 799999887 6655543 34321 111 1111 12357876
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+..... ...+....++++++|+++++.
T Consensus 228 i~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 643321 246777888999999655543
No 344
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.51 E-value=2 Score=36.98 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=71.3
Q ss_pred CeEEEECCC-CCHH-HHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC--------CCcc---ccc
Q 046623 55 KSVLELGAG-AGLP-GLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS--------DDLS---QLS 120 (218)
Q Consensus 55 ~~vLDlG~G-~G~~-~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~---~~~ 120 (218)
.+|-=+|=| .|.+ +..+++.|. +|+|+|+++ .++....-- ..+..-+... ..+. ...
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~--------~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGE--------SYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCc--------ceeecCcHHHHHHHHHhcCCceEecChh
Confidence 466666666 4433 223356666 899999999 777653221 1222111110 0000 000
Q ss_pred cCCCCcEEEE-ccccc---CCcc---hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHh-CC------cEEEE
Q 046623 121 ELGEFDMVIM-SDVFY---DPEE---MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMS-QG------FRVIE 186 (218)
Q Consensus 121 ~~~~~D~Iv~-~~~~~---~~~~---~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~-~g------f~~~~ 186 (218)
.....|+++. .+... ...+ .....+.+.+.|++|- ++++-++-..-.+++....+++. .| |.+..
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~-LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay 159 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGD-LVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY 159 (436)
T ss_pred hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCC-EEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee
Confidence 1126776653 33332 2233 3555667788889876 55555555555677777777555 33 33333
Q ss_pred EEccCCCCCCCce
Q 046623 187 LTCQLGGGCPEAF 199 (218)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (218)
.|.+..||.....
T Consensus 160 sPERv~PG~~~~e 172 (436)
T COG0677 160 SPERVLPGNVLKE 172 (436)
T ss_pred CccccCCCchhhh
Confidence 4777777765533
No 345
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.51 E-value=4 Score=33.68 Aligned_cols=86 Identities=19% Similarity=0.119 Sum_probs=49.4
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++.++|=+||| .|..++.+++ .|+..+..+|.++ .++.+... . ++ +..+. ....+|+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~------~~~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD------PRRDYRAI 204 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc------cCCCCCEE
Confidence 356678888875 4555555554 4665577788776 55544321 1 11 10100 12358988
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+= +... ...++.+.++++++|+++++.
T Consensus 205 id--~~G~----~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YD--ASGD----PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EE--CCCC----HHHHHHHHHhhhcCcEEEEEe
Confidence 83 2221 346777888999999655543
No 346
>PRK06181 short chain dehydrogenase; Provisional
Probab=86.29 E-value=12 Score=29.81 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=44.6
Q ss_pred CeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----ccCC
Q 046623 55 KSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SELG 123 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~~~ 123 (218)
.++|=.| |+|.++..+ ++.|. +|+.++.++ ..+.+.+.+...+ .++.+..+|+.+...-. . ...+
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3566555 445555544 34454 899999887 6666655554443 35778888887653110 0 0124
Q ss_pred CCcEEEEccc
Q 046623 124 EFDMVIMSDV 133 (218)
Q Consensus 124 ~~D~Iv~~~~ 133 (218)
..|.++.+..
T Consensus 78 ~id~vi~~ag 87 (263)
T PRK06181 78 GIDILVNNAG 87 (263)
T ss_pred CCCEEEECCC
Confidence 6899987543
No 347
>PRK06701 short chain dehydrogenase; Provisional
Probab=86.27 E-value=13 Score=30.45 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=45.1
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+.....++..+ .++.++.+|+.+...- .. .
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 456788888875553 2333455665 788887764 3444444444333 3477888888764311 11 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
....+|+++.+..
T Consensus 121 ~~~~iD~lI~~Ag 133 (290)
T PRK06701 121 ELGRLDILVNNAA 133 (290)
T ss_pred HcCCCCEEEECCc
Confidence 1246899886543
No 348
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.25 E-value=5.2 Score=32.47 Aligned_cols=95 Identities=23% Similarity=0.210 Sum_probs=51.0
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC--ccccccCCCCc
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD--LSQLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~D 126 (218)
.++.+||=.|+| .|..+..+++ .|..+++.+|.++ ..+.+++ .+.. .++. ..+.. .........+|
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~--~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT---ALAE--PEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---EecC--chhhHHHHHHHhCCCCCC
Confidence 467888888775 3333344443 4554589998887 6665543 2322 1111 01110 00001224589
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+++- +.. ....++.+.++++++|+++++.
T Consensus 190 ~vid--~~G----~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALE--FSG----ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEE--CCC----ChHHHHHHHHHhcCCCEEEEec
Confidence 8874 211 1346677788999999555554
No 349
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=86.09 E-value=2.4 Score=31.05 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=30.6
Q ss_pred EECCCCC--HHHHHHH--HhC-CCeEEEecCcc-hHHHHHHH--HHHhCCCCceEEEEe
Q 046623 59 ELGAGAG--LPGLTAA--RLG-ATRVVLTDVKP-LLPGLINN--VEANGLGGRVEVREL 109 (218)
Q Consensus 59 DlG~G~G--~~~~~l~--~~~-~~~v~~~D~~~-~~~~a~~~--~~~~~~~~~~~~~~~ 109 (218)
|+|+..| ....... ..+ ..+++++|.++ .++.++.+ +..+.....+++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEe
Confidence 8999999 4444432 232 35899999999 99999999 666644333555543
No 350
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.62 E-value=12 Score=29.11 Aligned_cols=34 Identities=35% Similarity=0.485 Sum_probs=25.9
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
....+|+=+||| .|. .+..+++.|..+++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 456799999998 343 4455678888899999977
No 351
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.67 E-value=26 Score=30.53 Aligned_cols=119 Identities=26% Similarity=0.281 Sum_probs=66.7
Q ss_pred CCCCeEEEECCCCCHHHH--HHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGAGLPGL--TAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~--~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++++|+=+|+|....+. .+++.|. +|+++|.++ .++...+.+...+ +.+...+..+. ..+.+|+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~------~~~~~d~ 71 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELG----IELVLGEYPEE------FLEGVDL 71 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC----CEEEeCCcchh------HhhcCCE
Confidence 356788888887633222 2356676 899999875 3333333333333 44555443321 2356899
Q ss_pred EEEcccccCCcc-hH----------HHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcE
Q 046623 128 VIMSDVFYDPEE-MV----------GLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFR 183 (218)
Q Consensus 128 Iv~~~~~~~~~~-~~----------~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~ 183 (218)
|+.+.-...... .. .-++.+.+..+ ...+.++.+..+..+.+.+..++...|..
T Consensus 72 vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~--~~vI~ITGS~GKTTt~~~l~~iL~~~g~~ 136 (450)
T PRK14106 72 VVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSK--APIVAITGTNGKTTTTTLLGEIFKNAGRK 136 (450)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcC--CCEEEEeCCCchHHHHHHHHHHHHHcCCC
Confidence 987654322111 11 11122333333 45666666777888889999998777753
No 352
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=84.61 E-value=0.29 Score=34.13 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=24.2
Q ss_pred CCcEEEEcccccC------CcchHHHHHHHHHHhcCCC
Q 046623 124 EFDMVIMSDVFYD------PEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 124 ~~D~Iv~~~~~~~------~~~~~~~l~~~~~lL~~gG 155 (218)
+||+|+|-.+.-+ .+-+..+++.+.++|+|||
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG 38 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGG 38 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCC
Confidence 4899998766421 2557889999999999999
No 353
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.25 E-value=17 Score=28.16 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=45.5
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
++.++|=.|+ +|.++..+ +..|. +|++++.++ ......+.+... ..+.++.+|+.+...- .. ..
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567888875 55555554 34455 799999887 666555554432 3478888887654311 00 01
Q ss_pred CCCCcEEEEcc
Q 046623 122 LGEFDMVIMSD 132 (218)
Q Consensus 122 ~~~~D~Iv~~~ 132 (218)
.+.+|.|+.+.
T Consensus 80 ~~~~d~vi~~a 90 (237)
T PRK07326 80 FGGLDVLIANA 90 (237)
T ss_pred cCCCCEEEECC
Confidence 24789988654
No 354
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.81 E-value=6.6 Score=32.47 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=57.1
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-----ccc-cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-----SQL-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~-~~ 121 (218)
..+..||==|+|+|. +++.+++.|+ ++..+|+++ ..+...+.++..| .+....+|+.+... .++ +.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 567889988988884 5666788887 899999999 7777777766665 47888888876531 111 24
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
-+..|+++.|.-+
T Consensus 112 ~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 112 VGDVDILVNNAGI 124 (300)
T ss_pred cCCceEEEecccc
Confidence 4788999876543
No 355
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=83.74 E-value=4.9 Score=33.12 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc--ccccCCCCcE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS--QLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~D~ 127 (218)
.++.+||..|+| .|...+.+++.-..+++.++.++ ..+.+++ .+.. .+.......... .......+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD----EVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCHHHHHHHhcCCCceE
Confidence 456788888765 35555556644334799999887 6665533 3321 111111111100 0113456898
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++-.- . ....++.+.++|+++|.++.+
T Consensus 236 vid~~--g----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 236 IFDFV--G----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEECC--C----CHHHHHHHHHHhhcCCEEEEE
Confidence 87421 1 145777888999999954444
No 356
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=83.56 E-value=20 Score=28.29 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=49.3
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----c-c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----L-S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~-~ 120 (218)
.+++++|=.|++.| ++.. +++.|. +|+.++.++ ..+.+.+.++..+ .++.++.+|+.+...- . . .
T Consensus 9 ~~~k~ilItGas~~-IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSARG-LGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCch-HHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 56778888886544 3443 345565 899999887 6666666555544 3478888888765321 1 0 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+++|.++.+..
T Consensus 85 ~~~~id~vi~~ag 97 (256)
T PRK06124 85 EHGRLDILVNNVG 97 (256)
T ss_pred hcCCCCEEEECCC
Confidence 2257899987544
No 357
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=83.10 E-value=20 Score=29.41 Aligned_cols=121 Identities=17% Similarity=0.095 Sum_probs=64.6
Q ss_pred CCCCeEEEECCCCCHHHH--HHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAGAGLPGL--TAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~--~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
..+++|+=+|||.-.-+. .++..|..+++.+|.+. ..+...+.+.... ....+.. +.+... ....+|+|
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~~--~~~~~~----~~~~aDiV 196 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF--PAARATA--GSDLAA----ALAAADGL 196 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC--CCeEEEe--ccchHh----hhCCCCEE
Confidence 566799999998433333 33567777899999987 5555554443321 1122222 111110 12458999
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
+..-+.........-+. ...++++. ++....+.+....+++.. ++.|..+..
T Consensus 197 InaTp~Gm~~~~~~~~~--~~~l~~~~---~v~DivY~P~~T~ll~~A-~~~G~~~~~ 248 (284)
T PRK12549 197 VHATPTGMAKHPGLPLP--AELLRPGL---WVADIVYFPLETELLRAA-RALGCRTLD 248 (284)
T ss_pred EECCcCCCCCCCCCCCC--HHHcCCCc---EEEEeeeCCCCCHHHHHH-HHCCCeEec
Confidence 87655442111110011 13566654 232333344556778887 888877543
No 358
>PRK07904 short chain dehydrogenase; Provisional
Probab=82.83 E-value=11 Score=30.08 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=47.2
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-h-HHHHHHHHHHhCCCCceEEEEeecCCCCc-----ccccc
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-L-LPGLINNVEANGLGGRVEVRELVWGSDDL-----SQLSE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~-~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~ 121 (218)
.+++||=.|+..| ++..+ ++.|..+|+.++.++ . .+.+.+.++..+. .++.++.+|+.+... +....
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 3557888887554 44433 444434899988876 4 6666555555432 248888899876441 11112
Q ss_pred CCCCcEEEEcc
Q 046623 122 LGEFDMVIMSD 132 (218)
Q Consensus 122 ~~~~D~Iv~~~ 132 (218)
.+..|+++.+.
T Consensus 85 ~g~id~li~~a 95 (253)
T PRK07904 85 GGDVDVAIVAF 95 (253)
T ss_pred cCCCCEEEEee
Confidence 25799888654
No 359
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.82 E-value=9.6 Score=30.15 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=50.3
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+...+.+...+ .++.++.+|+.+...- .. ..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457789988876653 2333455666 899999887 7766666655444 3477788887654311 10 11
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.++.|+++.+...
T Consensus 84 ~g~id~lv~~ag~ 96 (253)
T PRK05867 84 LGGIDIAVCNAGI 96 (253)
T ss_pred hCCCCEEEECCCC
Confidence 2579999976543
No 360
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.61 E-value=5.4 Score=33.63 Aligned_cols=94 Identities=18% Similarity=0.115 Sum_probs=51.4
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc---ccCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL---SELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~---~~~~~ 124 (218)
.++.+||=.|+| .|..++.+++ .|..+|+++|.++ ..+.+++ .+.. .++. ..+... ... .....
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~--~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVN--SSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEc--CCCcCHHHHHHHHhCCCC
Confidence 467888888864 2334444454 3554699999887 6666643 3321 1221 111111 111 12235
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+|+- +... ...+....++++++|+++++
T Consensus 246 ~d~vid--~~g~----~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 246 ADVVID--AVGR----PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCEEEE--CCCC----HHHHHHHHHHhccCCEEEEE
Confidence 898873 3222 24566677899999955554
No 361
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=82.46 E-value=4.2 Score=32.10 Aligned_cols=95 Identities=28% Similarity=0.275 Sum_probs=53.3
Q ss_pred CCCCeEEEECCCC-CHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc---cccCCCCc
Q 046623 52 FQNKSVLELGAGA-GLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ---LSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G~-G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~D 126 (218)
.++.+||-.|+|+ |.....+++....++++++.++ ..+.++. .+.. .+. +........ ......+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~--~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGAD---HVI--DYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCc---eec--cCCcCCHHHHHHHhcCCCCC
Confidence 5678999999886 4444444544335899999887 6655532 2211 111 111111100 01235799
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+++..-. . ...+..+.+.++++|.++.+.
T Consensus 204 ~vi~~~~--~----~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVG--G----PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCC--C----HHHHHHHHHhcccCCEEEEEc
Confidence 9985321 1 145677788999999554443
No 362
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.46 E-value=20 Score=27.49 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=58.5
Q ss_pred CCCCeEEEECCCCCHHHHHHH--HhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAGAGLPGLTAA--RLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~--~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
..+.+|.-+.|-+=..-.... ..+..+|...+.+. +++..| -+|+.-|......-.......||+|+
T Consensus 72 ~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDk-------RFe~yg----~eFvfYDyN~p~dlp~~lk~~fdiiv 140 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDK-------RFELYG----TEFVFYDYNCPLDLPDELKAHFDIIV 140 (217)
T ss_pred ccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehh-------hHHhcc----ceeEEeccCCCCCCHHHHHhcccEEE
Confidence 345678888775533111111 12345788888654 333433 35555555443321112346799999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+.+|+.+.+-..+.-..+..+.+++- .+++++
T Consensus 141 aDPPfL~~eCl~Kts~tik~L~r~~~-kvilCt 172 (217)
T KOG3350|consen 141 ADPPFLSEECLAKTSETIKRLQRNQK-KVILCT 172 (217)
T ss_pred eCCccccchhhhhhHHHHHHHhcCCc-eEEEec
Confidence 99999887777777778888888876 344444
No 363
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.32 E-value=21 Score=30.16 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=45.2
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc----------------------hHHHHHHHHHHhCCCCceEEE
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVKP----------------------LLPGLINNVEANGLGGRVEVR 107 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~----------------------~~~~a~~~~~~~~~~~~~~~~ 107 (218)
.+..+||=+||| .|. .+..+++.|..+++.+|.+. ..+.+++.+.+.+-...++.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 456799999998 343 44456788888999999762 234444555554433234444
Q ss_pred EeecCCCCccccccCCCCcEEEE
Q 046623 108 ELVWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 108 ~~d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
..++....... ....+|+|+.
T Consensus 102 ~~~~~~~~~~~--~~~~~DlVid 122 (338)
T PRK12475 102 VTDVTVEELEE--LVKEVDLIID 122 (338)
T ss_pred eccCCHHHHHH--HhcCCCEEEE
Confidence 44443222111 2356999986
No 364
>PRK07063 short chain dehydrogenase; Provisional
Probab=82.24 E-value=8.4 Score=30.61 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=49.8
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=.|+..|. ++..+++.|. +|+.++.++ ..+...+.+...+...++.++.+|+.+...- .. ..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456788888876553 2233455665 899999888 7776666655422224477888888765311 11 11
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+.+|.++.+..
T Consensus 84 ~g~id~li~~ag 95 (260)
T PRK07063 84 FGPLDVLVNNAG 95 (260)
T ss_pred hCCCcEEEECCC
Confidence 257899987543
No 365
>PRK07109 short chain dehydrogenase; Provisional
Probab=81.53 E-value=27 Score=29.27 Aligned_cols=78 Identities=29% Similarity=0.322 Sum_probs=49.1
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~ 120 (218)
.++++||=.|+..| ++.. +++.|. +|+.++.++ .++...+.++..+ .++.++.+|+.+...-. . .
T Consensus 6 l~~k~vlITGas~g-IG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 6 IGRQVVVITGASAG-VGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 34567877776554 3333 355565 899999888 7776666665544 34778888887653211 1 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+++|+++.+..
T Consensus 82 ~~g~iD~lInnAg 94 (334)
T PRK07109 82 ELGPIDTWVNNAM 94 (334)
T ss_pred HCCCCCEEEECCC
Confidence 2357999987544
No 366
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=81.23 E-value=6 Score=33.55 Aligned_cols=94 Identities=26% Similarity=0.238 Sum_probs=51.1
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCC-ccccc--cCCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDD-LSQLS--ELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~--~~~~~ 125 (218)
.++.+||=.|+| .|..+..+++ .|+.+|+++|.++ ..+.+++ .+.. .++. ..+.. .+... ..+.+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~--~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVN--AGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeC--CCchhHHHHHHHHhCCCC
Confidence 457788888865 3334444454 4554799999888 6666543 3322 1221 11111 11110 12368
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+|+- +... ...+....++++++|+++.+
T Consensus 261 d~vid--~~G~----~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 261 DYAFE--MAGS----VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CEEEE--CCCC----hHHHHHHHHHHhcCCEEEEE
Confidence 98883 2211 34566777899999955544
No 367
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.17 E-value=7.5 Score=32.30 Aligned_cols=95 Identities=25% Similarity=0.216 Sum_probs=50.1
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~ 125 (218)
.++.+||=.|+| .|..+..++ ..|+.++++++.++ ..+.+++ .+.. .++. ..+...... .....+
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~---~~i~--~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD---FVIN--SGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEc--CCcchHHHHHHHhCCCCC
Confidence 457788888764 233333344 34554499999887 6555532 3322 1111 111111111 122369
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+++- +.. ....+....++|+++|+++++.
T Consensus 233 d~vid--~~g----~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 233 DVAIE--CSG----NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CEEEE--CCC----CHHHHHHHHHHhhcCCEEEEEc
Confidence 98884 211 1345566778999999555543
No 368
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=81.13 E-value=2.7 Score=37.04 Aligned_cols=107 Identities=11% Similarity=-0.042 Sum_probs=63.0
Q ss_pred CCeEEEECCCCCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCC-CCceEEEEeecCCCCcccc---ccCCCCcE
Q 046623 54 NKSVLELGAGAGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGL-GGRVEVRELVWGSDDLSQL---SELGEFDM 127 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~---~~~~~~D~ 127 (218)
+..+|-+|-|+|.+...+. ..+..++++++++| +++.+.+++....- ..+++...+ .+...+.. .....||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dG--l~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADG--LDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhc--hHHHHHHhhccccccCCcE
Confidence 4568888888898888884 45557999999999 99999988743321 112222211 11111001 13457999
Q ss_pred EEEc---ccccCC------cchHHHHHHHHHHhcCCCceEEEEE
Q 046623 128 VIMS---DVFYDP------EEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 128 Iv~~---~~~~~~------~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+... ...+.. .-...++..+...|.|.|.+++-..
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence 8852 112211 1135566777889999994433333
No 369
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=80.93 E-value=12 Score=33.48 Aligned_cols=95 Identities=25% Similarity=0.358 Sum_probs=53.3
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC-------------C
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD-------------D 115 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------------~ 115 (218)
.++.+|+=+|+| .|..+..++ ..|+ .|+.+|.++ ..+.++. .+ .+++..|..+. .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lG----a~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MG----AEFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cC----CeEEeccccccccccccceeecCHH
Confidence 456899999998 555555555 4455 799999998 7665553 22 22333232110 0
Q ss_pred cc-----cc-ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 116 LS-----QL-SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 116 ~~-----~~-~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.. .. ..-..+|+|+..-.+.....+.=+.+...+.+|||+
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGs 278 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGS 278 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCC
Confidence 00 00 012469999764322222222335667788899987
No 370
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.72 E-value=25 Score=27.51 Aligned_cols=105 Identities=21% Similarity=0.284 Sum_probs=55.5
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L----- 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~----- 119 (218)
.+++++|=.|+..| ++..+ ++.|. +|++++.+. ..+.+...++..+ .++.++.+|+.+...-. .
T Consensus 4 ~~~k~vlItGasgg-iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 4 LPGKTALVTGSSRG-IGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CCCcEEEEECCCCc-HHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHH
Confidence 45678888886544 44443 44455 788877653 3444443333333 34677888887653211 1
Q ss_pred ccCCCCcEEEEcccccCC-------------cchHHHHHHHHHHhcCCCceEEE
Q 046623 120 SELGEFDMVIMSDVFYDP-------------EEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~-------------~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
...+..|+++.+...... .....+++.+.+.++.+|.++++
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 011468988865432110 01334566666666666644444
No 371
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=80.43 E-value=15 Score=28.85 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
.+..+|+=+||| .|. .+..+++.|..+++.+|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456799999998 454 4445678888889998877
No 372
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=80.34 E-value=2.2 Score=34.19 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=29.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHH
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVE 96 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~ 96 (218)
+..+++|+.||+|.++..+... ...++.-|+++ .....+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHHh
Confidence 6779999999999999988664 44899999999 5555443433
No 373
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.14 E-value=7.5 Score=27.99 Aligned_cols=75 Identities=27% Similarity=0.335 Sum_probs=44.0
Q ss_pred CCCCCeEEEECCCC-C-HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGA-G-LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G-~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
+.+++++|=+|+|. | .....++..|+.+++.+..+. -.+...+.+ .+ ..+.+.. +.+... ....+|+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--~~--~~~~~~~--~~~~~~----~~~~~Di 78 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--GG--VNIEAIP--LEDLEE----ALQEADI 78 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--TG--CSEEEEE--GGGHCH----HHHTESE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--Cc--cccceee--HHHHHH----HHhhCCe
Confidence 46788999999973 2 233334667887899998886 554444444 11 1244443 322221 2357999
Q ss_pred EEEccccc
Q 046623 128 VIMSDVFY 135 (218)
Q Consensus 128 Iv~~~~~~ 135 (218)
|+...+..
T Consensus 79 vI~aT~~~ 86 (135)
T PF01488_consen 79 VINATPSG 86 (135)
T ss_dssp EEE-SSTT
T ss_pred EEEecCCC
Confidence 99765543
No 374
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=80.05 E-value=2.3 Score=31.70 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=59.7
Q ss_pred eEEEECCCCC--HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 56 SVLELGAGAG--LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 56 ~vLDlG~G~G--~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
+|-=||.|.- ..+..+.+.|. .|+..|.++ ..+.+.+. + .... +... + .....|+|++.-
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~----g----~~~~-----~s~~-e--~~~~~dvvi~~v 65 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA----G----AEVA-----DSPA-E--AAEQADVVILCV 65 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT----T----EEEE-----SSHH-H--HHHHBSEEEE-S
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh----h----hhhh-----hhhh-h--HhhcccceEeec
Confidence 3444666532 22333455565 899999987 66554432 2 2222 1111 1 123469998732
Q ss_pred cccCCcchHHHHHH--HHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 133 VFYDPEEMVGLGKT--LKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 133 ~~~~~~~~~~~l~~--~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
+ +....++++.. +...+++|. +++-+++.......+..+.+ ...|....+.|+.-.+
T Consensus 66 ~--~~~~v~~v~~~~~i~~~l~~g~-iiid~sT~~p~~~~~~~~~~-~~~g~~~vdapV~Gg~ 124 (163)
T PF03446_consen 66 P--DDDAVEAVLFGENILAGLRPGK-IIIDMSTISPETSRELAERL-AAKGVRYVDAPVSGGP 124 (163)
T ss_dssp S--SHHHHHHHHHCTTHGGGS-TTE-EEEE-SS--HHHHHHHHHHH-HHTTEEEEEEEEESHH
T ss_pred c--cchhhhhhhhhhHHhhccccce-EEEecCCcchhhhhhhhhhh-hhccceeeeeeeeccc
Confidence 2 22445566665 666666655 44444444334455555555 8899999998876443
No 375
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.53 E-value=32 Score=27.39 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=45.0
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=.|+..| ++.. +++.|. +|+.++.++ ..+.+.+.. + ..+.++.+|+.+...- .. .
T Consensus 4 ~~~k~vlItGas~g-IG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 4 LAGKVAIVTGGATL-IGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHH
Confidence 35678888876544 3333 355666 899999887 555443322 2 3477888888765311 10 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+..|+++.+..
T Consensus 77 ~~g~id~lv~~ag 89 (261)
T PRK08265 77 RFGRVDILVNLAC 89 (261)
T ss_pred HhCCCCEEEECCC
Confidence 1257899987643
No 376
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=78.53 E-value=22 Score=27.60 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=25.6
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
.+..+|+=+||| .|. .+..+++.|..+++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456799999998 343 4445678888889999987
No 377
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.42 E-value=28 Score=27.47 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=43.3
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc-------------------c-hHHHHHHHHHHhCCCCceEEEEe
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK-------------------P-LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~-------------------~-~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
....+|+=+||| .|. .+..+++.|..+++.+|.+ . ..+.+++.+++.+-...++.+..
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 356699999998 443 4445678888888888543 3 34455555555442222444433
Q ss_pred ecCCCCccccccCCCCcEEEE
Q 046623 110 VWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+....... ....+|+|+.
T Consensus 99 ~i~~~~~~~--~~~~~DvVi~ 117 (228)
T cd00757 99 RLDAENAEE--LIAGYDLVLD 117 (228)
T ss_pred eeCHHHHHH--HHhCCCEEEE
Confidence 332211111 2246999996
No 378
>PRK08339 short chain dehydrogenase; Provisional
Probab=78.36 E-value=14 Score=29.52 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=48.9
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-----cccC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-----LSEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~ 122 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ .++.+.+.+.... ..++.++.+|+.+...-. ....
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 457788888877663 3334456676 899999887 6666655544321 134778888887653111 1122
Q ss_pred CCCcEEEEcc
Q 046623 123 GEFDMVIMSD 132 (218)
Q Consensus 123 ~~~D~Iv~~~ 132 (218)
+..|+++.+.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 5789988654
No 379
>PRK05650 short chain dehydrogenase; Provisional
Probab=78.33 E-value=32 Score=27.43 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=43.8
Q ss_pred eEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc-----ccCCC
Q 046623 56 SVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL-----SELGE 124 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~-----~~~~~ 124 (218)
++|=.|+ +|.++..+ ++.|. +|+.++.+. ..+.+.+.+...+ .++.++.+|+.+... ... ...+.
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5666665 44444443 45555 899988887 6666655555444 347788888865431 111 01257
Q ss_pred CcEEEEccc
Q 046623 125 FDMVIMSDV 133 (218)
Q Consensus 125 ~D~Iv~~~~ 133 (218)
+|+++.+..
T Consensus 78 id~lI~~ag 86 (270)
T PRK05650 78 IDVIVNNAG 86 (270)
T ss_pred CCEEEECCC
Confidence 899987644
No 380
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=78.16 E-value=14 Score=29.91 Aligned_cols=102 Identities=16% Similarity=0.248 Sum_probs=55.1
Q ss_pred HHHHHHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHH
Q 046623 68 GLTAARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGK 145 (218)
Q Consensus 68 ~~~l~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~ 145 (218)
++.+.+.| ..+|++.|.++ .++.+.+. |+- .-...+ .+ .-..+|+|+..-|. ....++++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~---~~~~~~-----~~---~~~~~DlvvlavP~---~~~~~~l~ 63 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GII---DEASTD-----IE---AVEDADLVVLAVPV---SAIEDVLE 63 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSS---SEEESH-----HH---HGGCCSEEEE-S-H---HHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCe---eeccCC-----Hh---HhcCCCEEEEcCCH---HHHHHHHH
Confidence 45566666 35999999999 77666433 322 111110 00 22457999976554 44688888
Q ss_pred HHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE-Ecc
Q 046623 146 TLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL-TCQ 190 (218)
Q Consensus 146 ~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~-~~~ 190 (218)
.+...+++|+ ++.-....+...-+.+... ...+..+... |..
T Consensus 64 ~~~~~~~~~~--iv~Dv~SvK~~~~~~~~~~-~~~~~~~v~~HPM~ 106 (258)
T PF02153_consen 64 EIAPYLKPGA--IVTDVGSVKAPIVEAMERL-LPEGVRFVGGHPMA 106 (258)
T ss_dssp HHHCGS-TTS--EEEE--S-CHHHHHHHHHH-HTSSGEEEEEEESC
T ss_pred HhhhhcCCCc--EEEEeCCCCHHHHHHHHHh-cCcccceeecCCCC
Confidence 8888888887 4443333334444455555 2345555554 544
No 381
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=78.11 E-value=4 Score=33.98 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=61.7
Q ss_pred CCeEEEECCCCCHHHHHHHHhC------------C---------CeEEEecCcc---hHHHHHHHHHHh-----------
Q 046623 54 NKSVLELGAGAGLPGLTAARLG------------A---------TRVVLTDVKP---LLPGLINNVEAN----------- 98 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l~~~~------------~---------~~v~~~D~~~---~~~~a~~~~~~~----------- 98 (218)
..+||.||.|.|.=...++..- . ..++.+|+.+ .+......+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3689999999986544442110 0 2799999988 455555555443
Q ss_pred C-C----CCceEEEEeecCCCCccccc---cCCCCcEEEEcccc---c--CCcchHHHHHHHHHHhcCCCceEEE
Q 046623 99 G-L----GGRVEVRELVWGSDDLSQLS---ELGEFDMVIMSDVF---Y--DPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 99 ~-~----~~~~~~~~~d~~~~~~~~~~---~~~~~D~Iv~~~~~---~--~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
. . .-++.|...|+......+.. .....++|.+...+ + +.....+++..+...++||..++|+
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 0 0 02367777777665432211 11235555432111 1 2356677888888899998844444
No 382
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.34 E-value=19 Score=28.64 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=25.3
Q ss_pred CCCeEEEECCC-CCHH-HHHHHHhCCCeEEEecCcc
Q 046623 53 QNKSVLELGAG-AGLP-GLTAARLGATRVVLTDVKP 86 (218)
Q Consensus 53 ~~~~vLDlG~G-~G~~-~~~l~~~~~~~v~~~D~~~ 86 (218)
...+|+=+||| .|.. +..+++.|..+++.+|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45689999998 5554 4446788888999888654
No 383
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=77.13 E-value=16 Score=32.36 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=70.6
Q ss_pred eEEEECCCCC--HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcEEEEc
Q 046623 56 SVLELGAGAG--LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDMVIMS 131 (218)
Q Consensus 56 ~vLDlG~G~G--~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~ 131 (218)
+|-=||.|.- .++..+++.|. +|+..|.++ ..+...+.....+.. +.. ... ..+. ......|+|++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~--i~~-----~~s-~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAKEGNTR--VKG-----YHT-LEELVNSLKKPRKVILL 73 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhhhcCCc--cee-----cCC-HHHHHhcCCCCCEEEEE
Confidence 3444666633 34445566666 899999998 766655432222211 111 111 1111 111246877653
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
-+ ......++++.+...|++|- +++-..+.......+....+ .+.|......|+.-.+
T Consensus 74 v~--~~~~v~~vi~~l~~~L~~g~-iIID~gn~~~~dt~~r~~~l-~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 74 IK--AGEAVDETIDNLLPLLEKGD-IIIDGGNEWYLNTERRIKRC-EEKGILYLGMGVSGGE 131 (470)
T ss_pred eC--ChHHHHHHHHHHHhhCCCCC-EEEECCCCCHHHHHHHHHHH-HHcCCeEEcCCCCCCH
Confidence 22 23456777788888888775 44444444445566666666 8889998888777554
No 384
>PRK09291 short chain dehydrogenase; Provisional
Probab=77.03 E-value=17 Score=28.64 Aligned_cols=75 Identities=21% Similarity=0.188 Sum_probs=44.5
Q ss_pred CeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 55 KSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
+++|=.|++ |.++..+ ++.|. +|+++..++ ..+......+..+. .+.++.+|+.+...-........|+++
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 467777764 4444444 44454 888888776 55555554444442 378888898765321111234799999
Q ss_pred Eccc
Q 046623 130 MSDV 133 (218)
Q Consensus 130 ~~~~ 133 (218)
.+..
T Consensus 79 ~~ag 82 (257)
T PRK09291 79 NNAG 82 (257)
T ss_pred ECCC
Confidence 7543
No 385
>PRK06139 short chain dehydrogenase; Provisional
Probab=77.02 E-value=13 Score=31.25 Aligned_cols=79 Identities=27% Similarity=0.260 Sum_probs=49.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~ 121 (218)
.+++++|=.|+.+|. ++..+++.|. +|+.++.++ .++...+.+...+ ..+.++.+|+.+...-. . ..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 356678877775543 2233455666 899999888 7777766666555 34777888887543111 0 01
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+.+|+++.+.-
T Consensus 82 ~g~iD~lVnnAG 93 (330)
T PRK06139 82 GGRIDVWVNNVG 93 (330)
T ss_pred cCCCCEEEECCC
Confidence 267899997654
No 386
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=76.86 E-value=6.5 Score=32.61 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=30.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHH
Q 046623 52 FQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPG 90 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~ 90 (218)
-.+.+|+-+|+|.....-.+++.++ ++.++|+|+ .+..
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAl 100 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIAL 100 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHH
Confidence 3567999999998777777778766 999999999 4444
No 387
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=76.15 E-value=43 Score=27.63 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=63.7
Q ss_pred CCCCCeEEEECCCCCHHHHHH--HHhCCCeEEEecCcc-hHHHHHHHHHHhCC--CCceEEEEeecCCCC-ccccccCCC
Q 046623 51 DFQNKSVLELGAGAGLPGLTA--ARLGATRVVLTDVKP-LLPGLINNVEANGL--GGRVEVRELVWGSDD-LSQLSELGE 124 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l--~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~-~~~~~~~~~ 124 (218)
..+++++|=+|||--.-++.. +..|..+++.++.++ ..+.+++-.+..+. ...+.+. ++.+.. .. .....
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~--~~~~~~~l~--~~~~~ 196 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVT--DLADQQAFA--EALAS 196 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEe--chhhhhhhh--hhccc
Confidence 356789999999854444433 456778999999885 34444443332211 1112222 221110 00 01246
Q ss_pred CcEEEEcccccCCcchHH-HHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 125 FDMVIMSDVFYDPEEMVG-LGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~-~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
+|+|+...+....+.... .... ...++++. ++....+.+....+++.. ++.|+...
T Consensus 197 aDivINaTp~Gm~~~~~~~~~~~-~~~l~~~~---~v~D~vY~P~~T~ll~~A-~~~G~~~~ 253 (288)
T PRK12749 197 ADILTNGTKVGMKPLENESLVND-ISLLHPGL---LVTECVYNPHMTKLLQQA-QQAGCKTI 253 (288)
T ss_pred CCEEEECCCCCCCCCCCCCCCCc-HHHCCCCC---EEEEecCCCccCHHHHHH-HHCCCeEE
Confidence 899997666543221111 1100 13455543 222233345556777777 88887654
No 388
>PRK08589 short chain dehydrogenase; Validated
Probab=75.91 E-value=39 Score=27.07 Aligned_cols=80 Identities=19% Similarity=0.410 Sum_probs=46.2
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccc-----c-ccC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-----L-SEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~-~~~ 122 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++..+...+.+...+ .++.++.+|+.+...-. . ...
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 456788877776553 2333455665 8998887763333333333333 34778888887653111 0 123
Q ss_pred CCCcEEEEcccc
Q 046623 123 GEFDMVIMSDVF 134 (218)
Q Consensus 123 ~~~D~Iv~~~~~ 134 (218)
+..|+++.+.-.
T Consensus 81 g~id~li~~Ag~ 92 (272)
T PRK08589 81 GRVDVLFNNAGV 92 (272)
T ss_pred CCcCEEEECCCC
Confidence 578999976543
No 389
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.84 E-value=30 Score=28.87 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=49.4
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc---cccCCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ---LSELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~ 125 (218)
.++.+||=.|+| .|..++.+++ .|...+++++.++ ..+.+++ .+.. .++. ..+..... ......+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~---~~i~--~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM---QTFN--SREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---eEec--CcccCHHHHHHHhcCCCC
Confidence 467788888864 3333444453 4554578888877 6665532 2321 1111 11111111 1122357
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|.++. ++... ...+....++++++|.++++
T Consensus 230 d~~v~-d~~G~----~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 230 DQLIL-ETAGV----PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CeEEE-ECCCC----HHHHHHHHHHhhcCCEEEEE
Confidence 73333 23222 35677788999999955544
No 390
>PRK05866 short chain dehydrogenase; Provisional
Probab=75.13 E-value=17 Score=29.80 Aligned_cols=78 Identities=27% Similarity=0.345 Sum_probs=48.0
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-ccc-----
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QLS----- 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~----- 120 (218)
..++++|=.|++.| ++.. +++.|. +|+.++.++ .++...+.+...+ ..+.++.+|+.+...- ...
T Consensus 38 ~~~k~vlItGasgg-IG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 38 LTGKRILLTGASSG-IGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 34577888876554 3433 345555 899999887 7666655554433 3477888888765311 110
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+..|+++.+..
T Consensus 114 ~~g~id~li~~AG 126 (293)
T PRK05866 114 RIGGVDILINNAG 126 (293)
T ss_pred HcCCCCEEEECCC
Confidence 1257899997643
No 391
>PRK07890 short chain dehydrogenase; Provisional
Probab=75.09 E-value=38 Score=26.59 Aligned_cols=77 Identities=27% Similarity=0.353 Sum_probs=47.6
Q ss_pred CCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-----c-cc
Q 046623 53 QNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-----L-SE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~-~~ 121 (218)
+++++|=.|++.| ++.. +++.|. +|+.++.++ ..+.+.+.+...+ .++.++.+|+.+...-. . ..
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 4668887776554 3333 455565 899999888 6666655554433 34788888886543210 0 12
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+..|+++.+..
T Consensus 80 ~g~~d~vi~~ag 91 (258)
T PRK07890 80 FGRVDALVNNAF 91 (258)
T ss_pred cCCccEEEECCc
Confidence 257899987653
No 392
>PRK05854 short chain dehydrogenase; Provisional
Probab=75.06 E-value=22 Score=29.34 Aligned_cols=81 Identities=20% Similarity=0.176 Sum_probs=49.5
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~ 121 (218)
.+++++|=.|+++|. ++..+++.|. +|+.+..+. ..+.+.+.+....-...+.++.+|+.+...-. . ..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 567788878876653 2333455665 899888887 66666555543321234788888987653111 0 12
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.++.|+++.+.-
T Consensus 91 ~~~iD~li~nAG 102 (313)
T PRK05854 91 GRPIHLLINNAG 102 (313)
T ss_pred CCCccEEEECCc
Confidence 357899997653
No 393
>PRK08223 hypothetical protein; Validated
Probab=74.82 E-value=29 Score=28.70 Aligned_cols=76 Identities=22% Similarity=0.194 Sum_probs=44.6
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc-h-------------------HHHHHHHHHHhCCCCceEEEEe
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVKP-L-------------------LPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~-~-------------------~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
.+..+||=+||| .|. .+..+++.|..+++.+|.+. - .+.+++.+.+.+-...++....
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~ 104 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPE 104 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 467799999998 454 45567888988888877553 2 3444555544442222444433
Q ss_pred ecCCCCccccccCCCCcEEE
Q 046623 110 VWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv 129 (218)
.+......+ .-..+|+|+
T Consensus 105 ~l~~~n~~~--ll~~~DlVv 122 (287)
T PRK08223 105 GIGKENADA--FLDGVDVYV 122 (287)
T ss_pred ccCccCHHH--HHhCCCEEE
Confidence 333322211 235799998
No 394
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.65 E-value=50 Score=27.73 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=54.1
Q ss_pred CeEEEECCCCCHH--HHHHHHhCCCeEEEecCcc-hHHHHHHHHHH-------hCCC-----CceEEEEeecCCCCcccc
Q 046623 55 KSVLELGAGAGLP--GLTAARLGATRVVLTDVKP-LLPGLINNVEA-------NGLG-----GRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 55 ~~vLDlG~G~G~~--~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~-------~~~~-----~~~~~~~~d~~~~~~~~~ 119 (218)
++|-=||+|+=.. +..++..|. +|+..|.++ ..+.+...++. .+.. .++.+. .. ..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-----~~-l~-- 78 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-----AT-IE-- 78 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-----CC-HH--
Confidence 4788889885433 334466665 999999998 77766554331 1111 111111 11 10
Q ss_pred ccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 120 SELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
......|+|+-+ +....+.-..++..+.+.++|+.
T Consensus 79 ~av~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a 113 (321)
T PRK07066 79 ACVADADFIQES-APEREALKLELHERISRAAKPDA 113 (321)
T ss_pred HHhcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe
Confidence 022568998873 44444556788899999999876
No 395
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=74.50 E-value=27 Score=28.83 Aligned_cols=94 Identities=30% Similarity=0.339 Sum_probs=50.8
Q ss_pred CCCCeEEEECCCC-CHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccc-cCCCCcE
Q 046623 52 FQNKSVLELGAGA-GLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLS-ELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~-G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~D~ 127 (218)
.++.+||-.|+|. |...+.+++ .|..++++++.++ ..+.+++ .+.. .++. .......... ....+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~--~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVN--LARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEc--CCchhhhhhhccCCCccE
Confidence 3678888888753 444444554 4544789998877 6654433 2221 1221 1111010111 1235899
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
++-... ....++.+.++|+++|+++.+
T Consensus 235 vld~~g------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 235 VFEASG------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 885211 134567788999999955544
No 396
>PRK08628 short chain dehydrogenase; Provisional
Probab=74.36 E-value=41 Score=26.52 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=45.4
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=.|++.| ++..+ ++.|. +++.++.++ .. ...+.+...+ .++.++.+|+.+...- .. .
T Consensus 5 l~~~~ilItGasgg-iG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 5 LKDKVVIVTGGASG-IGAAISLRLAEEGA-IPVIFGRSAPDD-EFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred cCCCEEEEeCCCCh-HHHHHHHHHHHcCC-cEEEEcCChhhH-HHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 45678887776544 44443 55565 788888777 55 3334444333 3478888888755311 11 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+..|.++.+..
T Consensus 80 ~~~~id~vi~~ag 92 (258)
T PRK08628 80 KFGRIDGLVNNAG 92 (258)
T ss_pred hcCCCCEEEECCc
Confidence 1257899887543
No 397
>PRK05872 short chain dehydrogenase; Provisional
Probab=74.13 E-value=42 Score=27.40 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=45.9
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----c-cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----L-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~-~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ .++...+.+.. ...+..+.+|+.+...- . . ..
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 467788877766553 2233355565 899999887 66655444321 23355556787654311 1 0 11
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.+++|+++.+.-.
T Consensus 83 ~g~id~vI~nAG~ 95 (296)
T PRK05872 83 FGGIDVVVANAGI 95 (296)
T ss_pred cCCCCEEEECCCc
Confidence 2579999976544
No 398
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=73.77 E-value=22 Score=26.97 Aligned_cols=93 Identities=28% Similarity=0.304 Sum_probs=51.7
Q ss_pred EEEECCCCCHHHH--HHHHhCCCeEEEecCcc-hHHHHHHHHHHh-------C-CC--------CceEEEEeecCCCCcc
Q 046623 57 VLELGAGAGLPGL--TAARLGATRVVLTDVKP-LLPGLINNVEAN-------G-LG--------GRVEVRELVWGSDDLS 117 (218)
Q Consensus 57 vLDlG~G~G~~~~--~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-------~-~~--------~~~~~~~~d~~~~~~~ 117 (218)
|.=+|+|+=.-++ .++..|. +|+..|.++ .++.+++.+... + +. .++.+. .|+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~----- 74 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLE----- 74 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGG-----
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHH-----
Confidence 4557887443333 3456665 999999999 888877766541 1 11 123322 1111
Q ss_pred ccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 118 QLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 118 ~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
.....|+|+=. +....+.-.+++..+.+++.|+. ++...
T Consensus 75 ---~~~~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~--ilasn 113 (180)
T PF02737_consen 75 ---EAVDADLVIEA-IPEDLELKQELFAELDEICPPDT--ILASN 113 (180)
T ss_dssp ---GGCTESEEEE--S-SSHHHHHHHHHHHHCCS-TTS--EEEE-
T ss_pred ---HHhhhheehhh-ccccHHHHHHHHHHHHHHhCCCc--eEEec
Confidence 22368888842 33334556788999998998877 44444
No 399
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.71 E-value=15 Score=31.09 Aligned_cols=34 Identities=32% Similarity=0.500 Sum_probs=25.8
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
....+||=+||| .|. .+..+++.|..+++.+|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456799999998 443 4445678888899999976
No 400
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=73.50 E-value=43 Score=28.11 Aligned_cols=94 Identities=18% Similarity=0.042 Sum_probs=52.8
Q ss_pred CCCCeEEEECCC--CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC-Ccc-ccc--cCCC
Q 046623 52 FQNKSVLELGAG--AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD-DLS-QLS--ELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G--~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~-~~~--~~~~ 124 (218)
.++.+||=.|++ .|..++.+++.-..++++++.++ ..+.+++. .|.. .++. ..+. ... ... ..+.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~--~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFN--YKEEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEE--CCCcccHHHHHHHHCCCC
Confidence 567889888873 56666666654334799988776 65554422 2322 1221 1111 111 010 1236
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+++- +.. ...+....++++++|+++++
T Consensus 229 vD~v~d--~vG-----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFD--NVG-----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEE--CCC-----HHHHHHHHHHhccCCEEEEE
Confidence 888873 221 24667788899999965554
No 401
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=73.23 E-value=23 Score=32.93 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=61.9
Q ss_pred CcCCCCccccccccccchhHHHHHHHHhcCCCCCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHH
Q 046623 20 NVCDSVTGRPLTGAWLWDSALILAQFISTHFDFQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINN 94 (218)
Q Consensus 20 ~~~~~~~~~~~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~ 94 (218)
+-|.+++..+......|+-.+.=.+.+.......++++|=.|++.| ++..+ ++.|. +|+.++.+. ..+...+.
T Consensus 380 ~~~~~~~~~~~f~~eyw~~e~~kl~~~~~~~~l~gkvvLVTGasgg-IG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~ 457 (676)
T TIGR02632 380 SEYVSLPEQEAFDIEYWPLEEAKLRRMPKEKTLARRVAFVTGGAGG-IGRETARRLAAEGA-HVVLADLNLEAAEAVAAE 457 (676)
T ss_pred cceecCchhhccchhhhhhhHHhhccCCCCcCCCCCEEEEeCCCcH-HHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHH
Confidence 3466666666666667754332222222222245778887776544 44443 45565 899999987 66655544
Q ss_pred HHHhCCCCceEEEEeecCCCCcc-cc-----ccCCCCcEEEEcccc
Q 046623 95 VEANGLGGRVEVRELVWGSDDLS-QL-----SELGEFDMVIMSDVF 134 (218)
Q Consensus 95 ~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~~~~~D~Iv~~~~~ 134 (218)
+....-...+.++.+|+.+...- .. ...+.+|+++.+...
T Consensus 458 l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~ 503 (676)
T TIGR02632 458 INGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGI 503 (676)
T ss_pred HHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence 43221112366777887654311 10 122578998876543
No 402
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=73.03 E-value=62 Score=29.62 Aligned_cols=78 Identities=23% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCC-------CCceEEEEeecCCCCcccc
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGL-------GGRVEVRELVWGSDDLSQL 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~-------~~~~~~~~~d~~~~~~~~~ 119 (218)
..+++||=.|+ +|.++..+ ++.|. +|++++.+. ..+.+.+.+...++ ..++.++.+|+.+...- .
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI-~ 154 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI-G 154 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH-H
Confidence 34566776665 56666655 34454 899988887 65554443332111 12478889998764321 1
Q ss_pred ccCCCCcEEEEcc
Q 046623 120 SELGEFDMVIMSD 132 (218)
Q Consensus 120 ~~~~~~D~Iv~~~ 132 (218)
...+.+|+||.+.
T Consensus 155 ~aLggiDiVVn~A 167 (576)
T PLN03209 155 PALGNASVVICCI 167 (576)
T ss_pred HHhcCCCEEEEcc
Confidence 1235789988753
No 403
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=73.02 E-value=51 Score=28.37 Aligned_cols=103 Identities=21% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCCCeEEEEC-CC-CCHHHHHHHHh---CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC-CCc-ccc---c
Q 046623 52 FQNKSVLELG-AG-AGLPGLTAARL---GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS-DDL-SQL---S 120 (218)
Q Consensus 52 ~~~~~vLDlG-~G-~G~~~~~l~~~---~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~---~ 120 (218)
.++.+|+=+| +| .|..++.+++. |+.+++++|.++ .++.+++...........+....+..+ ... ... .
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 4567888786 33 55666666654 345799999998 877776642110000001111112111 111 001 1
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
....+|+++-.-. ....+....++++++|.++++
T Consensus 254 ~g~g~D~vid~~g------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC------CHHHHHHHHHHhccCCeEEEE
Confidence 2236898875211 134667778899988855554
No 404
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=73.01 E-value=6.6 Score=35.83 Aligned_cols=50 Identities=26% Similarity=0.120 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhcCCC-CCCCeEEEECCCCCHHHHHHHHh-CC-CeEEEecCcc
Q 046623 37 DSALILAQFISTHFD-FQNKSVLELGAGAGLPGLTAARL-GA-TRVVLTDVKP 86 (218)
Q Consensus 37 ~~~~~l~~~l~~~~~-~~~~~vLDlG~G~G~~~~~l~~~-~~-~~v~~~D~~~ 86 (218)
.+++.|.++=.++.. .++..||||+|.+|.+...+++. +. +-|+|+|+-|
T Consensus 27 RsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 27 RSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 345566655444443 46678999999999999988654 43 4689999876
No 405
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=72.88 E-value=12 Score=28.22 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=26.0
Q ss_pred HHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 147 LKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 147 ~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
+.+++.++|.++++++....... ..++|...||.....
T Consensus 38 v~~l~~~~~~lflWvTn~~~~~~---~~~l~~~WGf~~~~~ 75 (176)
T PF05063_consen 38 VPQLAAPGALLFLWVTNSQLPEA---KLELFPAWGFEYVTE 75 (176)
T ss_pred HHHhCCCCcEEEEEeccchhhHH---HHHHHHhCCCEEEEE
Confidence 46678888888888876533222 355568999997665
No 406
>PRK06141 ornithine cyclodeaminase; Validated
Probab=72.47 E-value=37 Score=28.27 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=37.5
Q ss_pred ccccccchhHHHHHHHHhcCCCCCCCeEEEECCCC-CHHHHH-HHH-hCCCeEEEecCcc-hHHHHHHHHHH
Q 046623 30 LTGAWLWDSALILAQFISTHFDFQNKSVLELGAGA-GLPGLT-AAR-LGATRVVLTDVKP-LLPGLINNVEA 97 (218)
Q Consensus 30 ~~g~~~w~~~~~l~~~l~~~~~~~~~~vLDlG~G~-G~~~~~-l~~-~~~~~v~~~D~~~-~~~~a~~~~~~ 97 (218)
.++++.--.+-.-.+++.. ...++|+=+|||. |..... +.. .+..+++..+.++ ..+...+.+..
T Consensus 104 lT~~RTaa~sala~~~La~---~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~ 172 (314)
T PRK06141 104 LTARRTAAASALAASYLAR---KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA 172 (314)
T ss_pred hhcchhHHHHHHHHHHhCC---CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 3444443444444455433 3467899999984 333332 222 4556899999988 66665555544
No 407
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=72.32 E-value=22 Score=28.54 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=47.2
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+...+.+...+ .++.++.+|+.+...- .. ..
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456788877776553 2223345565 899999887 6666555554433 3477888888765311 11 11
Q ss_pred CCCCcEEEEcc
Q 046623 122 LGEFDMVIMSD 132 (218)
Q Consensus 122 ~~~~D~Iv~~~ 132 (218)
.+++|+++.+.
T Consensus 85 ~g~id~li~~a 95 (278)
T PRK08277 85 FGPCDILINGA 95 (278)
T ss_pred cCCCCEEEECC
Confidence 25789998754
No 408
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=71.53 E-value=27 Score=30.63 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=61.7
Q ss_pred EEEECCCCCHH--HHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEccc
Q 046623 57 VLELGAGAGLP--GLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDV 133 (218)
Q Consensus 57 vLDlG~G~G~~--~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~ 133 (218)
++-+| |+|.- +..+.+.|. +|++.|..+ . . .+.++..+ +.+..+ .... ....+|+|+.++-
T Consensus 4 ~iGig-gsGm~~la~~L~~~G~-~v~~~D~~~~~--~-~~~l~~~g----i~~~~g-~~~~------~~~~~d~vV~spg 67 (448)
T TIGR01082 4 FVGIG-GIGMSGIAEILLNRGY-QVSGSDIAENA--T-TKRLEALG----IPIYIG-HSAE------NLDDADVVVVSAA 67 (448)
T ss_pred EEEEC-HHHHHHHHHHHHHCCC-eEEEECCCcch--H-HHHHHHCc----CEEeCC-CCHH------HCCCCCEEEECCC
Confidence 34443 56653 555567776 899999876 4 2 22233333 444432 1111 1235899998776
Q ss_pred ccCC-cchHH----------HHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCc
Q 046623 134 FYDP-EEMVG----------LGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 134 ~~~~-~~~~~----------~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf 182 (218)
+... +.... -.+.+.+++++ ...+.++.+..+..+...+..++...|.
T Consensus 68 i~~~~p~~~~a~~~~i~v~~~~el~~~~~~~-~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 68 IKDDNPEIVEAKERGIPVIRRAEMLAELMRF-RHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCCCCHHHHHHHHcCCceEeHHHHHHHHHhc-CcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 5321 11111 11223444442 2466777777788899999999888886
No 409
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=71.35 E-value=35 Score=29.54 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=45.4
Q ss_pred CeEEEECCC-CCHHHH-HHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEc
Q 046623 55 KSVLELGAG-AGLPGL-TAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 55 ~~vLDlG~G-~G~~~~-~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.+||=|||| .|.... .+++.+..+|+..|.+. .+..+...... +++....|..+...- ..--..+|+|+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al-~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDAL-VALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHH-HHHHhcCCEEEEe
Confidence 478999995 333322 23555646999999997 77766554322 478888887765311 1122445988864
Q ss_pred ccc
Q 046623 132 DVF 134 (218)
Q Consensus 132 ~~~ 134 (218)
-+.
T Consensus 76 ~p~ 78 (389)
T COG1748 76 APP 78 (389)
T ss_pred CCc
Confidence 443
No 410
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=71.35 E-value=27 Score=28.81 Aligned_cols=117 Identities=13% Similarity=0.006 Sum_probs=65.3
Q ss_pred eEEEECCCCCH--HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 56 SVLELGAGAGL--PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 56 ~vLDlG~G~G~--~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
+|-=||+|.-. ++..+++.|. +|+..|.++ ..+.+.+ .+... . .+..+. .......|+|++.-
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~----~g~~~---~--~s~~~~----~~~~~~~dvIi~~v 67 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKE----DRTTG---V--ANLREL----SQRLSAPRVVWVMV 67 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCcc---c--CCHHHH----HhhcCCCCEEEEEc
Confidence 34557776432 3344455554 889999988 6655543 12110 0 011000 00123569888743
Q ss_pred cccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccC
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQL 191 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~ 191 (218)
+- ....++++.+...+++|- +++-..+.......+....+ .+.|....+.|+.-
T Consensus 68 p~---~~~~~v~~~l~~~l~~g~-ivid~st~~~~~t~~~~~~~-~~~g~~~vda~vsG 121 (298)
T TIGR00872 68 PH---GIVDAVLEELAPTLEKGD-IVIDGGNSYYKDSLRRYKLL-KEKGIHLLDCGTSG 121 (298)
T ss_pred Cc---hHHHHHHHHHHhhCCCCC-EEEECCCCCcccHHHHHHHH-HhcCCeEEecCCCC
Confidence 31 255777788888888765 44444444445565666666 78888887777654
No 411
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=71.30 E-value=15 Score=31.48 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
.++.+|+=+||| .|. .+..+++.|..+++.+|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456789999998 444 4445678888899999987
No 412
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=71.09 E-value=31 Score=30.21 Aligned_cols=111 Identities=23% Similarity=0.240 Sum_probs=58.7
Q ss_pred CCCCHHHH--HHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCC-c
Q 046623 62 AGAGLPGL--TAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP-E 138 (218)
Q Consensus 62 ~G~G~~~~--~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~-~ 138 (218)
||.|..++ .+.+.|. .|++.|.++..+.. ..++..+ +.+..+. ... . ....+|+|+.++-+... +
T Consensus 8 gG~gm~~la~~l~~~G~-~V~~~D~~~~~~~~-~~l~~~g----i~~~~~~---~~~-~--~~~~~d~vV~SpgI~~~~~ 75 (448)
T TIGR01081 8 CGTFMGGLAMIAKQLGH-EVTGSDANVYPPMS-TQLEAQG----IEIIEGF---DAA-Q--LEPKPDLVVIGNAMKRGNP 75 (448)
T ss_pred CHHhHHHHHHHHHhCCC-EEEEECCCCCcHHH-HHHHHCC----CEEeCCC---CHH-H--CCCCCCEEEECCCCCCCCH
Confidence 35665444 4567776 89999987621111 1233333 3333211 110 0 12358999988765321 1
Q ss_pred chHHH----------HHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEE
Q 046623 139 EMVGL----------GKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 139 ~~~~~----------l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~ 184 (218)
..... ++.+.+.+.+.-..+.++.+..+..+.+.+..++...|+..
T Consensus 76 ~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 131 (448)
T TIGR01081 76 CVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKP 131 (448)
T ss_pred HHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCC
Confidence 11111 11233333222235667777778888899999988777653
No 413
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.69 E-value=59 Score=26.82 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=55.2
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc------ccc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ------LSE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~ 121 (218)
..++.||==||-+|. ++..+++.|. +++.+-... .++...+.+++.+-..++.++.+|+.+...-. ...
T Consensus 10 ~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 10 LAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred hCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 457788888888884 4445577777 666666666 77777555555544335889999998764211 125
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.+..|+.+.|.-+
T Consensus 89 fg~vDvLVNNAG~ 101 (282)
T KOG1205|consen 89 FGRVDVLVNNAGI 101 (282)
T ss_pred cCCCCEEEecCcc
Confidence 5889999987654
No 414
>PLN02740 Alcohol dehydrogenase-like
Probab=70.60 E-value=40 Score=28.68 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=50.6
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC--Cc-cccc--cCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD--DL-SQLS--ELG 123 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~-~~~~--~~~ 123 (218)
.++.+||=+|+| .|..++.+++ .|+.+|+++|.++ ..+.+++ .+.. .++. ..+. .. +.+. ..+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~--~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFIN--PKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEe--cccccchHHHHHHHHhCC
Confidence 567889888875 3334444454 4554799999888 7776643 3322 2221 1111 01 1110 122
Q ss_pred CCcEEEEcccccCCcchHHHHHHHHHHhcCC-CceEEE
Q 046623 124 EFDMVIMSDVFYDPEEMVGLGKTLKRVCGTG-RHTVVW 160 (218)
Q Consensus 124 ~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g-G~~~i~ 160 (218)
.+|+++- +... ...+....++++++ |+++++
T Consensus 268 g~dvvid--~~G~----~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 268 GVDYSFE--CAGN----VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCCEEEE--CCCC----hHHHHHHHHhhhcCCCEEEEE
Confidence 6898874 2211 24566677788886 755444
No 415
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=70.08 E-value=49 Score=27.95 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=47.0
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCC-CccccccCCCCcEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSD-DLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~D~I 128 (218)
.++.+||=.|+| .|..++.+++.-..+++.++.++ ....+. +..|.. .++. ..+. .... ..+.+|++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~--~~~~~~~~~--~~~~~D~v 251 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD---SFLV--STDPEKMKA--AIGTMDYI 251 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc---EEEc--CCCHHHHHh--hcCCCCEE
Confidence 357788878875 34444445544333788887765 332221 123321 1111 0110 1100 11357888
Q ss_pred EEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 129 IMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+- +.. ....+....++++++|+++.+
T Consensus 252 id--~~g----~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 252 ID--TVS----AVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EE--CCC----CHHHHHHHHHHhcCCcEEEEe
Confidence 73 221 123566678899999965544
No 416
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=69.88 E-value=35 Score=27.87 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=26.2
Q ss_pred CCCCeEEEECCC-CCHHHH-HHHHhCCCeEEEecCcc
Q 046623 52 FQNKSVLELGAG-AGLPGL-TAARLGATRVVLTDVKP 86 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~-~l~~~~~~~v~~~D~~~ 86 (218)
..+.+|+=+||| .|.... .+++.|..+++.+|.+.
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 567799999998 555444 45788878999988663
No 417
>PRK06172 short chain dehydrogenase; Provisional
Probab=69.69 E-value=32 Score=27.06 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=48.9
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----c-cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----L-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~-~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+...+ .++.++.+|+.+...- . . ..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456788888875543 2223355565 899999887 6666666655444 4478888888754311 1 0 11
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+++|+++.+..
T Consensus 82 ~g~id~li~~ag 93 (253)
T PRK06172 82 YGRLDYAFNNAG 93 (253)
T ss_pred hCCCCEEEECCC
Confidence 257899997543
No 418
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.34 E-value=83 Score=27.99 Aligned_cols=115 Identities=26% Similarity=0.343 Sum_probs=64.3
Q ss_pred CCCCeEEEECCC-CCHHHHHH-HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTA-ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l-~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.++++|+=+|.| +|..+..+ ...|+ +|++.|.++ ..+. ++..+ +.+...+.... .-..+|+|
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~----l~~~g----~~~~~~~~~~~------~l~~~D~V 74 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRP----HAERG----VATVSTSDAVQ------QIADYALV 74 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH----HHhCC----CEEEcCcchHh------HhhcCCEE
Confidence 356789999998 55444443 45565 899999665 4332 22333 33433221111 12357999
Q ss_pred EEcccccCCcchHHHHHHH--------------HHHh-----cCCCceEEEEEeeccCChHHHHHHHHHhCCcEE
Q 046623 129 IMSDVFYDPEEMVGLGKTL--------------KRVC-----GTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 129 v~~~~~~~~~~~~~~l~~~--------------~~lL-----~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~ 184 (218)
+.++.+... .+.+..+ .+.. .....++.++.+..+..+.+.+..++...|...
T Consensus 75 V~SpGi~~~---~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~ 146 (488)
T PRK03369 75 VTSPGFRPT---APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRS 146 (488)
T ss_pred EECCCCCCC---CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCce
Confidence 987765321 1111111 1221 112235666777778888899999988877643
No 419
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=69.15 E-value=19 Score=32.15 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=69.8
Q ss_pred eEEEECCCCC--HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcEEEEc
Q 046623 56 SVLELGAGAG--LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDMVIMS 131 (218)
Q Consensus 56 ~vLDlG~G~G--~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~ 131 (218)
+|==||.|.- ..+..+++.|. +|+..|.++ ..+...+.....|... +.. ... ..++ ....+.|+|++.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~~~~~Ga~~---~~~---a~s-~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGNLP---LYG---FKD-PEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHhhhhcCCcc---ccc---CCC-HHHHHhcCCCCCEEEEE
Confidence 3444566632 23444456665 899999987 6655443221112110 100 111 1111 122358999973
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
+...+..+++++.+...|++|- ++|-..+.......+..+.+ .+.|......|+.-.+
T Consensus 80 --v~~~~aV~~Vi~gl~~~l~~G~-iiID~sT~~~~~t~~~~~~l-~~~Gi~fldapVSGG~ 137 (493)
T PLN02350 80 --VKAGAPVDQTIKALSEYMEPGD-CIIDGGNEWYENTERRIKEA-AEKGLLYLGMGVSGGE 137 (493)
T ss_pred --CCCcHHHHHHHHHHHhhcCCCC-EEEECCCCCHHHHHHHHHHH-HHcCCeEEeCCCcCCH
Confidence 3344556677777777888765 44444444444555655555 8899999998887554
No 420
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=69.15 E-value=64 Score=26.62 Aligned_cols=119 Identities=21% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCCCCeEEEECCCCCHHHHH--HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGAGLPGLT--AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~--l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
+.+++++|=+|+|--.-++. +++.|.++++.+..+. ..+.+.+.+...+. .+.... +.+.. ....+|+
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~--~~~~~~--~~~~~-----~~~~~dl 193 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA--AVEAAA--LADLE-----GLEEADL 193 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc--cccccc--ccccc-----cccccCE
Confidence 34678999999986654444 4677878899999887 66666666654431 111111 11111 1115899
Q ss_pred EEEcccccCCcc-hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEE
Q 046623 128 VIMSDVFYDPEE-MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRV 184 (218)
Q Consensus 128 Iv~~~~~~~~~~-~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~ 184 (218)
||-.-+...... -...+. ..+++++- ++....+.+....++++. ++.|...
T Consensus 194 iINaTp~Gm~~~~~~~~~~--~~~l~~~~---~v~D~vY~P~~TplL~~A-~~~G~~~ 245 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP--AELLPKGA---IVYDVVYNPLETPLLREA-RAQGAKT 245 (283)
T ss_pred EEECCCCCCCCCCCCCCCc--HHhcCcCC---EEEEeccCCCCCHHHHHH-HHcCCeE
Confidence 997666544332 122333 55667654 333333345566778887 7777663
No 421
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=68.79 E-value=5.9 Score=37.03 Aligned_cols=45 Identities=31% Similarity=0.324 Sum_probs=39.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh
Q 046623 53 QNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN 98 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~ 98 (218)
.+..++|-.+|-|.+.+.+.+.|. .|+++|.+| +.-..++.++..
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlEyP 135 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLEYP 135 (875)
T ss_pred cCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHHhcc
Confidence 356799999999999999999986 999999999 988888877543
No 422
>PRK05876 short chain dehydrogenase; Provisional
Probab=68.39 E-value=30 Score=27.88 Aligned_cols=79 Identities=32% Similarity=0.360 Sum_probs=48.3
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=.|+++| ++.. +++.|. +|+.++.++ .++.+.+.+...+ ..+.++.+|+.+...- .. .
T Consensus 4 ~~~k~vlVTGas~g-IG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 4 FPGRGAVITGGASG-IGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred cCCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45678887776655 3333 355566 799999887 6666555554443 3477788888764311 00 1
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..++.|+++.+.-.
T Consensus 80 ~~g~id~li~nAg~ 93 (275)
T PRK05876 80 LLGHVDVVFSNAGI 93 (275)
T ss_pred HcCCCCEEEECCCc
Confidence 12468999876543
No 423
>PRK07062 short chain dehydrogenase; Provisional
Probab=68.34 E-value=40 Score=26.75 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----c-cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----L-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~-~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+....-...+.++.+|+.+...- . . ..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 457788888876653 2333455566 899999887 6666555554332112467778887765311 0 0 12
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+..|+++.+..
T Consensus 85 ~g~id~li~~Ag 96 (265)
T PRK07062 85 FGGVDMLVNNAG 96 (265)
T ss_pred cCCCCEEEECCC
Confidence 357899987654
No 424
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.28 E-value=40 Score=23.91 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=42.9
Q ss_pred CCeEEEECCCCC-HHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 54 NKSVLELGAGAG-LPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 54 ~~~vLDlG~G~G-~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
.++|+|+|-|-= ..+..+++.|. .++++|+++. +.. ..+.++.-|+.+.... .=...|+|.+-.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a~-----~g~~~v~DDitnP~~~---iY~~A~lIYSiR 78 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TAP-----EGLRFVVDDITNPNIS---IYEGADLIYSIR 78 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cCc-----ccceEEEccCCCccHH---HhhCccceeecC
Confidence 349999998754 34556678875 8999999863 111 2267787777665431 225678888754
Q ss_pred c
Q 046623 133 V 133 (218)
Q Consensus 133 ~ 133 (218)
|
T Consensus 79 p 79 (129)
T COG1255 79 P 79 (129)
T ss_pred C
Confidence 4
No 425
>PRK08703 short chain dehydrogenase; Provisional
Probab=68.12 E-value=51 Score=25.61 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=45.3
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc---cc----c
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL---SQ----L 119 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~----~ 119 (218)
.+++++|=.|+..| ++.. +++.|. +|+.++.++ ..+...+.+...+. ..+.+..+|+.+... .. .
T Consensus 4 l~~k~vlItG~sgg-iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i 80 (239)
T PRK08703 4 LSDKTILVTGASQG-LGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATI 80 (239)
T ss_pred CCCCEEEEECCCCc-HHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHH
Confidence 45678998986544 4433 345565 899999888 66665555543322 225566777653211 10 0
Q ss_pred c--cCCCCcEEEEccc
Q 046623 120 S--ELGEFDMVIMSDV 133 (218)
Q Consensus 120 ~--~~~~~D~Iv~~~~ 133 (218)
. ..+.+|.|+.+..
T Consensus 81 ~~~~~~~id~vi~~ag 96 (239)
T PRK08703 81 AEATQGKLDGIVHCAG 96 (239)
T ss_pred HHHhCCCCCEEEEecc
Confidence 0 1156899886543
No 426
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=67.99 E-value=29 Score=28.81 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=47.2
Q ss_pred CeEEEECCC--CCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCC-----CceEEEEeecCCCCccccccCCCCcE
Q 046623 55 KSVLELGAG--AGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLG-----GRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 55 ~~vLDlG~G--~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.+|+=+|+| .|.++..+++.|. .|+.+..++ .+. ...+++. ....+......... .....+|+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~-~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~D~ 75 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD-YEA----VRENGLQVDSVHGDFHLPPVQAYRSA----EDMPPCDW 75 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC-HHH----HHhCCeEEEeCCCCeeecCceEEcch----hhcCCCCE
Confidence 478888888 3345666666665 788887765 221 2222321 00111000000000 02357999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|+..-..+ ...++++.+..++++++
T Consensus 76 vilavK~~---~~~~~~~~l~~~~~~~~ 100 (313)
T PRK06249 76 VLVGLKTT---ANALLAPLIPQVAAPDA 100 (313)
T ss_pred EEEEecCC---ChHhHHHHHhhhcCCCC
Confidence 98743332 34677888888888887
No 427
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=67.98 E-value=16 Score=29.90 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=50.3
Q ss_pred CeEEEECCCCC--HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh----------CC-C--------CceEEEEeecC
Q 046623 55 KSVLELGAGAG--LPGLTAARLGATRVVLTDVKP-LLPGLINNVEAN----------GL-G--------GRVEVRELVWG 112 (218)
Q Consensus 55 ~~vLDlG~G~G--~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~----------~~-~--------~~~~~~~~d~~ 112 (218)
.+|.=+|+|.= .++..++..|. +|+.+|.++ .++.+++.+... +. . .++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~----- 77 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS----- 77 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-----
Confidence 36777888843 23334456665 899999999 887765543321 10 0 001111
Q ss_pred CCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 113 SDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 113 ~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.. .. .....|+|+..-+ ...+....+++.+.+.++++.
T Consensus 78 ~~-~~---~~~~aDlVieav~-e~~~~k~~~~~~l~~~~~~~~ 115 (291)
T PRK06035 78 TS-YE---SLSDADFIVEAVP-EKLDLKRKVFAELERNVSPET 115 (291)
T ss_pred CC-HH---HhCCCCEEEEcCc-CcHHHHHHHHHHHHhhCCCCe
Confidence 00 00 1245799887432 222335677888888888765
No 428
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=67.86 E-value=22 Score=29.33 Aligned_cols=118 Identities=20% Similarity=0.114 Sum_probs=61.8
Q ss_pred EEEECCCC-C-HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcEEEEcc
Q 046623 57 VLELGAGA-G-LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDMVIMSD 132 (218)
Q Consensus 57 vLDlG~G~-G-~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~~ 132 (218)
|-=||+|. | ..+..+.+.+. +++..|.++ ..+.+. ..+. ... .. ..+. ...+..|+|++.-
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~----~~g~----~~~-----~s-~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAG----KLGI----TAR-----HS-LEELVSKLEAPRTIWVMV 67 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH----HCCC----eec-----CC-HHHHHHhCCCCCEEEEEe
Confidence 33456553 2 23333445554 788899887 655542 2221 111 11 1111 0112368887643
Q ss_pred cccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
+ .......++..+...+++|. +++-+++.......+..+.+ ...|....+.|+.-.+
T Consensus 68 p--~~~~~~~v~~~i~~~l~~g~-ivid~st~~~~~~~~~~~~~-~~~g~~~vdapV~G~~ 124 (299)
T PRK12490 68 P--AGEVTESVIKDLYPLLSPGD-IVVDGGNSRYKDDLRRAEEL-AERGIHYVDCGTSGGV 124 (299)
T ss_pred c--CchHHHHHHHHHhccCCCCC-EEEECCCCCchhHHHHHHHH-HHcCCeEEeCCCCCCH
Confidence 3 22355666677766677765 44444444444555655655 7888877776766554
No 429
>PRK08862 short chain dehydrogenase; Provisional
Probab=67.82 E-value=36 Score=26.68 Aligned_cols=78 Identities=23% Similarity=0.194 Sum_probs=49.8
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ .++.+.+.+...+ ..+....+|..+...-. . ..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 456789988888874 3444566666 899999888 7777666665544 23556667765443111 1 12
Q ss_pred CC-CCcEEEEcc
Q 046623 122 LG-EFDMVIMSD 132 (218)
Q Consensus 122 ~~-~~D~Iv~~~ 132 (218)
.+ ..|+++.+.
T Consensus 80 ~g~~iD~li~na 91 (227)
T PRK08862 80 FNRAPDVLVNNW 91 (227)
T ss_pred hCCCCCEEEECC
Confidence 24 799988765
No 430
>PRK07035 short chain dehydrogenase; Provisional
Probab=67.78 E-value=36 Score=26.74 Aligned_cols=79 Identities=23% Similarity=0.324 Sum_probs=48.7
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~ 121 (218)
.+++++|=.|+++|. ++..+++.|. +|+.++.++ ..+...+.+...+ .++.++.+|+.+...-. . ..
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456788888877663 2333455665 899999887 6666666655443 34677788876553111 0 11
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+++|+++.+..
T Consensus 83 ~~~id~li~~ag 94 (252)
T PRK07035 83 HGRLDILVNNAA 94 (252)
T ss_pred cCCCCEEEECCC
Confidence 246899986543
No 431
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=67.73 E-value=9.4 Score=32.89 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=44.9
Q ss_pred CceEEEEeecCCCCccccccCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceEEEEEee
Q 046623 102 GRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTVVWAVSE 164 (218)
Q Consensus 102 ~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~i~~~~~ 164 (218)
+++.+...++.+.... .+.+++|.+++.|...+. +...+.++.+.+.++|||++++-....
T Consensus 275 drv~i~t~si~~~L~~--~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRR--LPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHh--CCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 6688888776554321 157899999998887654 567888999999999999666655544
No 432
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=67.43 E-value=42 Score=23.86 Aligned_cols=32 Identities=41% Similarity=0.554 Sum_probs=22.5
Q ss_pred CCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 54 NKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 54 ~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
..+|+=+||| .|. .+..+++.|..+++.+|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4588999997 553 4555678888888887744
No 433
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=67.38 E-value=34 Score=28.16 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=51.9
Q ss_pred CCCCeEEEECC--CCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC-CCccc-c--ccCCC
Q 046623 52 FQNKSVLELGA--GAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS-DDLSQ-L--SELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~--G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~-~--~~~~~ 124 (218)
.++.+||=.|+ |.|..++.+++....++++++.++ ..+.+++ .|.. .++. ..+ ..... . ...+.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~---~vi~--~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD---VAFN--YKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEe--ccccccHHHHHHHhCCCC
Confidence 46778888874 355666666654334888888776 6655532 3432 1121 111 01110 0 01246
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
+|+++- +.. ...+....++++++|+++.+.
T Consensus 208 vdvv~d--~~G-----~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 208 YDCYFD--NVG-----GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eEEEEE--CCC-----HHHHHHHHHHhCcCcEEEEec
Confidence 888873 322 234577888999999666553
No 434
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.24 E-value=33 Score=28.45 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=39.2
Q ss_pred eEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc-h-------------------HHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 56 SVLELGAG-AGL-PGLTAARLGATRVVLTDVKP-L-------------------LPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 56 ~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~-~-------------------~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
+||=+||| .|. ....++..|..+++.+|.+. - .+.+++.+.+.+-.-.++....++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 46778887 443 33445777888888888543 2 23334444433322234444444443
Q ss_pred CCccccccCCCCcEEEE
Q 046623 114 DDLSQLSELGEFDMVIM 130 (218)
Q Consensus 114 ~~~~~~~~~~~~D~Iv~ 130 (218)
... ..-..||+|+.
T Consensus 81 ~~~---~f~~~fdvVi~ 94 (291)
T cd01488 81 KDE---EFYRQFNIIIC 94 (291)
T ss_pred hhH---HHhcCCCEEEE
Confidence 221 13367999996
No 435
>PRK07411 hypothetical protein; Validated
Probab=67.15 E-value=28 Score=30.06 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=44.6
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc-h-------------------HHHHHHHHHHhCCCCceEEEEe
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVKP-L-------------------LPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~-~-------------------~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
.+..+||=+||| .|. .+..++..|..+++.+|.+. - .+.+++.+.+.+-..+++.+..
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 356799999998 444 44456788888888888553 2 3444555544442223444443
Q ss_pred ecCCCCccccccCCCCcEEEE
Q 046623 110 VWGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~ 130 (218)
.+...... ..-..+|+|+.
T Consensus 116 ~~~~~~~~--~~~~~~D~Vvd 134 (390)
T PRK07411 116 RLSSENAL--DILAPYDVVVD 134 (390)
T ss_pred ccCHHhHH--HHHhCCCEEEE
Confidence 33332111 12357999995
No 436
>PRK06125 short chain dehydrogenase; Provisional
Probab=66.69 E-value=47 Score=26.27 Aligned_cols=79 Identities=28% Similarity=0.346 Sum_probs=48.0
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c-cccCCC
Q 046623 52 FQNKSVLELGAGAGLPGLT----AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q-LSELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~----l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~-~~~~~~ 124 (218)
.+++++|=.|++.| ++.. +++.|. +|++++.++ ..+.+.+.+.... ..++.+..+|+.+...- . ....++
T Consensus 5 ~~~k~vlItG~~~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 5 LAGKRVLITGASKG-IGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCC
Confidence 35678888887555 3333 455666 899999887 6666555554321 13477888887654311 1 112367
Q ss_pred CcEEEEccc
Q 046623 125 FDMVIMSDV 133 (218)
Q Consensus 125 ~D~Iv~~~~ 133 (218)
.|.++.+..
T Consensus 82 id~lv~~ag 90 (259)
T PRK06125 82 IDILVNNAG 90 (259)
T ss_pred CCEEEECCC
Confidence 999987543
No 437
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=66.68 E-value=13 Score=31.51 Aligned_cols=95 Identities=20% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc--cccCCCCcE
Q 046623 53 QNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ--LSELGEFDM 127 (218)
Q Consensus 53 ~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~D~ 127 (218)
++.+|.=+||| -|.-.+.-+ ..++.+++++|+++ .++.|++ .|.. +++...=.....+. .......|+
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT---~~vn~~~~~~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT---HFVNPKEVDDVVEAIVELTDGGADY 257 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc---eeecchhhhhHHHHHHHhcCCCCCE
Confidence 45667777776 454444444 55778999999999 8877653 3433 33321000000000 012336787
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
.+ ++..+ ...++.....+.++|..+++
T Consensus 258 ~~--e~~G~----~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 258 AF--ECVGN----VEVMRQALEATHRGGTSVII 284 (366)
T ss_pred EE--EccCC----HHHHHHHHHHHhcCCeEEEE
Confidence 75 33332 23667777777778855544
No 438
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=66.03 E-value=42 Score=26.65 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=51.0
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
.+++++|=.|++.|. ++..++..|. +++.++.++ ..+.+.+.+...+ .++.++.+|+.+...- .. ..
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456788888887653 2333456666 788888887 7777666665544 3477888888755321 11 11
Q ss_pred CCCCcEEEEcccc
Q 046623 122 LGEFDMVIMSDVF 134 (218)
Q Consensus 122 ~~~~D~Iv~~~~~ 134 (218)
.+++|.++.+...
T Consensus 85 ~~~id~li~~ag~ 97 (265)
T PRK07097 85 VGVIDILVNNAGI 97 (265)
T ss_pred CCCCCEEEECCCC
Confidence 2578999976543
No 439
>PRK06914 short chain dehydrogenase; Provisional
Probab=65.49 E-value=39 Score=27.02 Aligned_cols=78 Identities=23% Similarity=0.338 Sum_probs=45.8
Q ss_pred CCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c----ccCC
Q 046623 54 NKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L----SELG 123 (218)
Q Consensus 54 ~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~----~~~~ 123 (218)
++++|=.|+..| ++..+ ++.|. +|++++.++ ..+.........+....+.++.+|+.+...-. . ...+
T Consensus 3 ~k~~lItGasg~-iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGASSG-FGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECCCch-HHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 456777775444 34333 45565 899988877 66555544444333345888888887653210 0 1125
Q ss_pred CCcEEEEccc
Q 046623 124 EFDMVIMSDV 133 (218)
Q Consensus 124 ~~D~Iv~~~~ 133 (218)
+.|.|+.+..
T Consensus 81 ~id~vv~~ag 90 (280)
T PRK06914 81 RIDLLVNNAG 90 (280)
T ss_pred CeeEEEECCc
Confidence 6798886543
No 440
>PRK07677 short chain dehydrogenase; Provisional
Probab=65.14 E-value=42 Score=26.38 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=45.1
Q ss_pred CeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----ccCCC
Q 046623 55 KSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SELGE 124 (218)
Q Consensus 55 ~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~~~~ 124 (218)
+++|=.|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+...+ ..+.++.+|+.+...- .. ...++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 567777775552 2223355566 899999887 6666655554433 3477888887654311 10 11257
Q ss_pred CcEEEEcc
Q 046623 125 FDMVIMSD 132 (218)
Q Consensus 125 ~D~Iv~~~ 132 (218)
.|.++.+.
T Consensus 79 id~lI~~a 86 (252)
T PRK07677 79 IDALINNA 86 (252)
T ss_pred ccEEEECC
Confidence 89998654
No 441
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.02 E-value=14 Score=31.13 Aligned_cols=96 Identities=18% Similarity=0.231 Sum_probs=52.1
Q ss_pred CCCCeEEEECCCCCHHHH-HHH-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc---ccCCCC
Q 046623 52 FQNKSVLELGAGAGLPGL-TAA-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL---SELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~-~l~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~ 125 (218)
.++.++.=+|.|.=.++. .-+ ..|+++++++|+|+ ..+.+++- |..+.++-. |..+ ...++ ...+.+
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~--d~~~-~i~evi~EmTdgGv 263 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GATEFINPK--DLKK-PIQEVIIEMTDGGV 263 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----CcceecChh--hccc-cHHHHHHHHhcCCc
Confidence 456777778776433322 223 56889999999999 88887643 433222211 3222 11111 134667
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCC-CceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTG-RHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~g-G~~~i~ 160 (218)
|+-+ +++.+ .+.+.++......| |..+++
T Consensus 264 Dysf--Ec~G~----~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 264 DYSF--ECIGN----VSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred eEEE--EecCC----HHHHHHHHHHhhcCCCeEEEE
Confidence 7665 34433 34555555556666 644444
No 442
>PRK07877 hypothetical protein; Provisional
Probab=64.92 E-value=28 Score=32.70 Aligned_cols=77 Identities=18% Similarity=0.068 Sum_probs=45.5
Q ss_pred CCCCeEEEECCCCCHHHH-HHHHhCC-CeEEEecCcc-h------------------HHHHHHHHHHhCCCCceEEEEee
Q 046623 52 FQNKSVLELGAGAGLPGL-TAARLGA-TRVVLTDVKP-L------------------LPGLINNVEANGLGGRVEVRELV 110 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~-~l~~~~~-~~v~~~D~~~-~------------------~~~a~~~~~~~~~~~~~~~~~~d 110 (218)
.+..+|+=+|||-|.... .+++.|. .+++.+|.+. - .+.+++.+...+-...++.+...
T Consensus 105 L~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 105 LGRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred HhcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 456799999999776544 4578884 7888877543 2 33445555444433335555544
Q ss_pred cCCCCccccccCCCCcEEEE
Q 046623 111 WGSDDLSQLSELGEFDMVIM 130 (218)
Q Consensus 111 ~~~~~~~~~~~~~~~D~Iv~ 130 (218)
+....... ....+|+|+-
T Consensus 185 i~~~n~~~--~l~~~DlVvD 202 (722)
T PRK07877 185 LTEDNVDA--FLDGLDVVVE 202 (722)
T ss_pred CCHHHHHH--HhcCCCEEEE
Confidence 44332222 2356899984
No 443
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=64.90 E-value=93 Score=27.54 Aligned_cols=122 Identities=25% Similarity=0.311 Sum_probs=70.7
Q ss_pred CCCeEEEECCC-CCHHHHH-HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 53 QNKSVLELGAG-AGLPGLT-AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 53 ~~~~vLDlG~G-~G~~~~~-l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.+++|+=+|=| +|.-+.. +.+.|. .|+..|.++ . +..... ... ...+.+..+..... ....+|+|+
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~-~~~~~~-~~~--~~~i~~~~g~~~~~------~~~~~d~vV 74 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAP-EGLAAQ-PLL--LEGIEVELGSHDDE------DLAEFDLVV 74 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCc-cchhhh-hhh--ccCceeecCccchh------ccccCCEEE
Confidence 37789999988 6654443 456665 999999888 5 222211 111 12355554432221 345789999
Q ss_pred EcccccCCcc-hHH----------HHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEE
Q 046623 130 MSDVFYDPEE-MVG----------LGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIE 186 (218)
Q Consensus 130 ~~~~~~~~~~-~~~----------~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~ 186 (218)
.+|-+..... .++ =++...+.. +....+.++.+..+.++...+..+++..|+...-
T Consensus 75 ~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l 141 (448)
T COG0771 75 KSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALL 141 (448)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCcee
Confidence 9886643211 111 111122332 2224566677777888889999998999986433
No 444
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.89 E-value=3.4 Score=30.87 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=30.2
Q ss_pred cCCCCcEEEEcccccCC--cchHHHHHHHHHHhcCCCceE
Q 046623 121 ELGEFDMVIMSDVFYDP--EEMVGLGKTLKRVCGTGRHTV 158 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~--~~~~~~l~~~~~lL~~gG~~~ 158 (218)
.+++.|+|.+..++.|. +....+++.+.+.|||||.+.
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~Lr 83 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLR 83 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEE
Confidence 56789999998887663 556778899999999999333
No 445
>PRK07478 short chain dehydrogenase; Provisional
Probab=64.24 E-value=47 Score=26.11 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=48.4
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-----c-cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-----L-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~-~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+.+.+.+...+ .++.++.+|+.+...-. . ..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 346678877765542 2233355566 899999887 7776666665544 34778888887653111 0 12
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.++.|+++.+..
T Consensus 81 ~~~id~li~~ag 92 (254)
T PRK07478 81 FGGLDIAFNNAG 92 (254)
T ss_pred cCCCCEEEECCC
Confidence 257899987654
No 446
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.19 E-value=45 Score=27.21 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=50.5
Q ss_pred eEEEECCCCCHHHH--HHHHhCCCeEEEecCcc-hHHHHHHHHHHh--------CCC---------CceEEEEeecCCCC
Q 046623 56 SVLELGAGAGLPGL--TAARLGATRVVLTDVKP-LLPGLINNVEAN--------GLG---------GRVEVRELVWGSDD 115 (218)
Q Consensus 56 ~vLDlG~G~G~~~~--~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~--------~~~---------~~~~~~~~d~~~~~ 115 (218)
+|.=+|+|.-..++ .++..|. +|+.+|.++ .++.+++++... ... .++.+. ..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~d- 77 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-----TD- 77 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-----CC-
Confidence 67778888543333 3455555 899999999 888876654221 110 111111 11
Q ss_pred ccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
... .....|+|+..-+ ...+....+++.+.+.++++.
T Consensus 78 ~~~--a~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ 114 (287)
T PRK08293 78 LAE--AVKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKT 114 (287)
T ss_pred HHH--HhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCC
Confidence 100 1256799987433 222345677788888777665
No 447
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=64.09 E-value=82 Score=26.02 Aligned_cols=34 Identities=35% Similarity=0.456 Sum_probs=23.8
Q ss_pred CCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc
Q 046623 53 QNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVKP 86 (218)
Q Consensus 53 ~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~ 86 (218)
...+||=+||| -|. .+..++..|.++++.+|.+.
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 45689999997 332 33445777888899888553
No 448
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=63.95 E-value=80 Score=25.86 Aligned_cols=94 Identities=24% Similarity=0.232 Sum_probs=50.1
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc--ccccCCCCc
Q 046623 52 FQNKSVLELGAG-AGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS--QLSELGEFD 126 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~D 126 (218)
.++.+||-.|+| .|...+.+++. |...++.++.++ ..+.+++ .+.. .++. ..+.... .......+|
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~--~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVD--PSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEec--CCCCCHHHHHHhcCCCCc
Confidence 467788888754 23344444544 443488888877 6555432 2321 2221 1111100 011235689
Q ss_pred EEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++-.-. ....+....++|+++|.++.+
T Consensus 229 ~v~~~~~------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATG------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCC------ChHHHHHHHHHHhcCCEEEEE
Confidence 9985211 135677788899999954444
No 449
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=63.94 E-value=79 Score=25.75 Aligned_cols=117 Identities=25% Similarity=0.271 Sum_probs=61.1
Q ss_pred CCCCCeEEEECCCC-CH-HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 51 DFQNKSVLELGAGA-GL-PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 51 ~~~~~~vLDlG~G~-G~-~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
...++++|=+|+|. |. ....++..|..+|+.++.+. ..+.+.+.+.... .+.+ ..+.. . ....+|+
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~---~~~~-~~~~~---~----~~~~~Di 188 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG---KAEL-DLELQ---E----ELADFDL 188 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc---ceee-cccch---h----ccccCCE
Confidence 35678999999862 21 12223456756899999887 6555554443211 1222 11110 0 2356899
Q ss_pred EEEcccccCCcc--hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 128 VIMSDVFYDPEE--MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 128 Iv~~~~~~~~~~--~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
|+..-+....+. ...+ ....++++. +++ ...+.+....+++.. ++.|..+.
T Consensus 189 vInaTp~g~~~~~~~~~~---~~~~l~~~~--~v~-DivY~P~~T~ll~~A-~~~G~~~~ 241 (278)
T PRK00258 189 IINATSAGMSGELPLPPL---PLSLLRPGT--IVY-DMIYGPLPTPFLAWA-KAQGARTI 241 (278)
T ss_pred EEECCcCCCCCCCCCCCC---CHHHcCCCC--EEE-EeecCCCCCHHHHHH-HHCcCeec
Confidence 997655433211 0011 124556654 222 223345556777777 88887654
No 450
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=63.86 E-value=19 Score=30.81 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=26.7
Q ss_pred CCCCeEEEECCC-CCHHHHHHH-HhCCCeEEEecCcc-hHHHHHH
Q 046623 52 FQNKSVLELGAG-AGLPGLTAA-RLGATRVVLTDVKP-LLPGLIN 93 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~-~~~~~~v~~~D~~~-~~~~a~~ 93 (218)
.++.+|+=+|+| .|..+...+ ..|+ +|+.+|.++ ..+.+..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDA 208 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH
Confidence 355679989887 444444433 4566 799999987 6555433
No 451
>PRK06940 short chain dehydrogenase; Provisional
Probab=63.65 E-value=76 Score=25.50 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=55.1
Q ss_pred eEEEECCCCCHHHHHHHH---hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc----ccCCCCc
Q 046623 56 SVLELGAGAGLPGLTAAR---LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL----SELGEFD 126 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~l~~---~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~----~~~~~~D 126 (218)
.+|=-|+ |.++..+++ .| .+|+.++.++ ..+.+.+.+...+ .++.++.+|+.+...- .. ...+++|
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G-~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAG-KKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 4554454 456666532 34 4899999887 6655555544433 3477888888765311 11 1125799
Q ss_pred EEEEcccccCC-cch-----------HHHHHHHHHHhcCCCceEEE
Q 046623 127 MVIMSDVFYDP-EEM-----------VGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 127 ~Iv~~~~~~~~-~~~-----------~~~l~~~~~lL~~gG~~~i~ 160 (218)
+++.+.-.... .+. -.+++.+.+.++++|..+++
T Consensus 79 ~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 79 GLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 99976544321 121 22345555666666654444
No 452
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.58 E-value=60 Score=25.58 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=45.7
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----ccC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~~ 122 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++..+.+.+.+...+ ..+.++.+|+.+...-. . ...
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567788888886653 2333455665 7888776653333333333333 34778888887653111 0 112
Q ss_pred CCCcEEEEccc
Q 046623 123 GEFDMVIMSDV 133 (218)
Q Consensus 123 ~~~D~Iv~~~~ 133 (218)
+..|+++.+..
T Consensus 90 g~id~li~~ag 100 (258)
T PRK06935 90 GKIDILVNNAG 100 (258)
T ss_pred CCCCEEEECCC
Confidence 47899997543
No 453
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=63.46 E-value=9.8 Score=31.03 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=29.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCCeEEEecCcc
Q 046623 50 FDFQNKSVLELGAGAGLPGLTAARLGATRVVLTDVKP 86 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l~~~~~~~v~~~D~~~ 86 (218)
...+++.+.||.+|||..+..+.+.|. .|++-|+..
T Consensus 24 ~~~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDle~ 59 (330)
T COG3392 24 EDLSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDLEY 59 (330)
T ss_pred cccCCCeeeeeccCccHHHHHHHHhcc-hhhhchHHH
Confidence 345677999999999999999988876 788777544
No 454
>PRK09242 tropinone reductase; Provisional
Probab=63.38 E-value=50 Score=26.03 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-----cc-cc
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-----QL-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~-~~ 121 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++ ..+...+.+....-...+.++.+|+.+...- .. ..
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457788888876553 2223355565 899999887 6666666654431123477788888654311 01 12
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+++|+++.+..
T Consensus 86 ~g~id~li~~ag 97 (257)
T PRK09242 86 WDGLHILVNNAG 97 (257)
T ss_pred cCCCCEEEECCC
Confidence 357899986553
No 455
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=63.25 E-value=43 Score=26.79 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVKP 86 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~ 86 (218)
.++.+|+=+||| .|. .+..+++.|..+++.+|.+.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 345699999998 454 34456788888888877543
No 456
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=63.16 E-value=31 Score=29.61 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=25.2
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
....+||=+||| .|. .+..+++.|..+++.+|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 456799999998 443 3444578888889988866
No 457
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=63.14 E-value=29 Score=28.42 Aligned_cols=93 Identities=15% Similarity=0.043 Sum_probs=51.5
Q ss_pred CCCCeEEEECC--CCCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc--ccCCCC
Q 046623 52 FQNKSVLELGA--GAGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL--SELGEF 125 (218)
Q Consensus 52 ~~~~~vLDlG~--G~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~--~~~~~~ 125 (218)
.++.+||=.|+ +.|..++.+++....++++++.++ ..+.+++ .|.. .++ |..+... ... .....+
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~---~vi--~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD---AVF--NYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEE--eCCCccHHHHHHHHCCCCc
Confidence 46778887774 355555656654334788888776 6665543 3332 222 1121111 011 012468
Q ss_pred cEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 126 DMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 126 D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
|+|+- +.. ...+....++++++|+++.+
T Consensus 213 d~vld--~~g-----~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 213 DCYFD--NVG-----GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEEE--CCC-----HHHHHHHHHhhccCCEEEEE
Confidence 88873 221 24567788899999965544
No 458
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=62.82 E-value=1.3e+02 Score=28.32 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=58.6
Q ss_pred CeEEEECCCCCHHHHH--HHHhCCCeEEEecCcc-hHHHHHHHHHHh-------C-CC--------CceEEEEeecCCCC
Q 046623 55 KSVLELGAGAGLPGLT--AARLGATRVVLTDVKP-LLPGLINNVEAN-------G-LG--------GRVEVRELVWGSDD 115 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~--l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-------~-~~--------~~~~~~~~d~~~~~ 115 (218)
.+|-=||+|+=.-++. ++..|. .|+..|.++ +++.+++++... + +. .++... .|+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---- 387 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY---- 387 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH----
Confidence 3688899996555444 456665 899999999 888776665432 1 10 112111 010
Q ss_pred ccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
..-...|+|+= .++.+.+.-.+++.++.++++|+.
T Consensus 388 ----~~~~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ 422 (714)
T TIGR02437 388 ----AGFDNVDIVVE-AVVENPKVKAAVLAEVEQHVREDA 422 (714)
T ss_pred ----HHhcCCCEEEE-cCcccHHHHHHHHHHHHhhCCCCc
Confidence 02356898885 355566677899999999999987
No 459
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.76 E-value=53 Score=25.58 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=46.7
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----cc
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----SE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~~ 121 (218)
+++++|=.|+. |.++..+ ++.|. +|+.++.+. ..+.+.+.+...+ .++.++.+|+.+...-+ . ..
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45678877764 4444444 44455 899999887 6666665555433 34788888886543111 0 01
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.++.|+++.+..
T Consensus 78 ~~~~d~vi~~ag 89 (250)
T TIGR03206 78 LGPVDVLVNNAG 89 (250)
T ss_pred cCCCCEEEECCC
Confidence 246898886553
No 460
>PRK05717 oxidoreductase; Validated
Probab=62.67 E-value=74 Score=25.02 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=45.2
Q ss_pred CCCCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-----cc
Q 046623 50 FDFQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-----QL 119 (218)
Q Consensus 50 ~~~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~ 119 (218)
+.++++++|=.|++ |.++..+ ++.|. +|+.++.++ ......+.. + ..+.++.+|+.+...- ..
T Consensus 6 ~~~~~k~vlItG~s-g~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 6 PGHNGRVALVTGAA-RGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKAL---G--ENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred cccCCCEEEEeCCc-chHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHc---C--CceEEEEccCCCHHHHHHHHHHH
Confidence 34667888877764 4444443 45555 899998776 443332221 2 3477888888764311 11
Q ss_pred -ccCCCCcEEEEcccc
Q 046623 120 -SELGEFDMVIMSDVF 134 (218)
Q Consensus 120 -~~~~~~D~Iv~~~~~ 134 (218)
...+++|+++.+...
T Consensus 79 ~~~~g~id~li~~ag~ 94 (255)
T PRK05717 79 LGQFGRLDALVCNAAI 94 (255)
T ss_pred HHHhCCCCEEEECCCc
Confidence 122468999976543
No 461
>PRK08328 hypothetical protein; Provisional
Probab=62.55 E-value=50 Score=26.19 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=25.3
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCc
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVK 85 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~ 85 (218)
..+.+|+=+||| .|. .+..+++.|..+++.+|.+
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 456789999998 454 3445678888899998854
No 462
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=62.40 E-value=60 Score=27.20 Aligned_cols=98 Identities=20% Similarity=0.128 Sum_probs=52.9
Q ss_pred CCCCeEEEECCC--CCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAG--AGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G--~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++.+||=.|+. .|.+++.+++. |+ .++++-.++ ..+.+ +..+....++....|+.+.. .+.-....+|+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v-~~~t~g~gvDv 214 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELL----KELGADHVINYREEDFVEQV-RELTGGKGVDV 214 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHH-HHHcCCCCceE
Confidence 458899988854 45667777654 54 555555554 34333 33343322332222221111 01112236999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
|+- +. -.+.+....+.|+++|+++.+..
T Consensus 215 v~D--~v-----G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 215 VLD--TV-----GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EEE--CC-----CHHHHHHHHHHhccCCEEEEEec
Confidence 995 21 24566778889999995555544
No 463
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=62.19 E-value=51 Score=29.15 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=65.1
Q ss_pred eEEEECCCCCHHHHH--HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEE-eecCCCCccccccCCCCcEEEEc
Q 046623 56 SVLELGAGAGLPGLT--AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRE-LVWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 56 ~vLDlG~G~G~~~~~--l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.++-| ||+|..+++ +...|. +|.+.|.+. . ..+.++..|.. +.. -|.. .....|.|+.+
T Consensus 11 HfIGI-gG~GMsglA~iL~~~G~-~VsGSD~~~~~---~t~~L~~~G~~----i~~gh~~~--------ni~~~~~VV~s 73 (459)
T COG0773 11 HFIGI-GGIGMSGLAEILLNLGY-KVSGSDLAESP---MTQRLEALGIE----IFIGHDAE--------NILDADVVVVS 73 (459)
T ss_pred EEEee-ccccHHHHHHHHHhCCC-ceECccccccH---HHHHHHHCCCe----EeCCCCHH--------HcCCCceEEEe
Confidence 56777 467765554 466776 899999998 4 23344455532 222 1111 11233446655
Q ss_pred ccccCC-cc----------hHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEE
Q 046623 132 DVFYDP-EE----------MVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIEL 187 (218)
Q Consensus 132 ~~~~~~-~~----------~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 187 (218)
..+-.. +. ...-.+.+..+++. -..+.+..+..+..+...+.+++...|.+..-+
T Consensus 74 ~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm~~-~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~ 139 (459)
T COG0773 74 NAIKEDNPEIVAALERGIPVISRAEMLAELMRF-RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFL 139 (459)
T ss_pred cccCCCCHHHHHHHHcCCCeEcHHHHHHHHHhC-CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEE
Confidence 554321 11 11122344555555 234666667778889999999988888776554
No 464
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=61.82 E-value=37 Score=28.31 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=50.5
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-cc---cccCCC
Q 046623 52 FQNKSVLELGAG-AGLPGLTAAR-LGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQ---LSELGE 124 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~-~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~---~~~~~~ 124 (218)
.++.+||=.|+| .|..++.+++ .|...++.++.++ ..+.+++ .+.. .++. ...... .. ......
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~--~~~~~~~~~i~~~~~~~~ 235 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVD--YKNGDVVEQILKLTGGKG 235 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEec--CCCCCHHHHHHHHhCCCC
Confidence 467788888764 3333344453 4555689998887 5555442 3322 1111 111110 01 112246
Q ss_pred CcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
+|+++- +... ...+..+.++|+++|+++.+
T Consensus 236 ~d~vld--~~g~----~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 236 VDAVII--AGGG----QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CcEEEE--CCCC----HHHHHHHHHHhhcCCEEEEe
Confidence 898874 2111 34677888899999955544
No 465
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=61.51 E-value=35 Score=28.18 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=45.0
Q ss_pred CCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----cc
Q 046623 53 QNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SE 121 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~ 121 (218)
+++++|=.|+.. .++..+ ++.|. +|+.++.+. ..+.+.+.+...+ ..+.++.+|+.+...- .. ..
T Consensus 5 ~~k~vlVTGas~-gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 5 AKGTVIITGASS-GVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCEEEEEcCCC-hHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCHHHHHHHHHHHHHh
Confidence 466788777654 444443 45565 899988776 5555544443222 3478888888765311 11 01
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.++.|+++.+..
T Consensus 81 ~~~iD~li~nAg 92 (322)
T PRK07453 81 GKPLDALVCNAA 92 (322)
T ss_pred CCCccEEEECCc
Confidence 246899997654
No 466
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.49 E-value=73 Score=25.88 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=50.0
Q ss_pred eEEEECCCC--CHHHHHHHHhCCCeEEEecCcc-hHHHHHHHH-------HHhC-CC--------CceEEEEeecCCCCc
Q 046623 56 SVLELGAGA--GLPGLTAARLGATRVVLTDVKP-LLPGLINNV-------EANG-LG--------GRVEVRELVWGSDDL 116 (218)
Q Consensus 56 ~vLDlG~G~--G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~-------~~~~-~~--------~~~~~~~~d~~~~~~ 116 (218)
+|.=+|+|. +.++..+++.|. +|+.+|.++ .++.+++.+ ...+ +. .++.+. .|. .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~----~ 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL----D 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH----H
Confidence 566678873 234444566665 899999999 776554332 2222 11 011111 111 0
Q ss_pred cccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 117 SQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 117 ~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.....|+|+..-+ .......+++..+.+.++++.
T Consensus 79 ----~~~~aDlVi~av~-e~~~~k~~~~~~l~~~~~~~~ 112 (282)
T PRK05808 79 ----DLKDADLVIEAAT-ENMDLKKKIFAQLDEIAKPEA 112 (282)
T ss_pred ----HhccCCeeeeccc-ccHHHHHHHHHHHHhhCCCCc
Confidence 2356899987422 122333588888988888876
No 467
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=61.17 E-value=37 Score=28.26 Aligned_cols=88 Identities=25% Similarity=0.280 Sum_probs=50.2
Q ss_pred eEEEECCC--CCHHHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeec----CCCCccccccCCCCcEEE
Q 046623 56 SVLELGAG--AGLPGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVW----GSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 56 ~vLDlG~G--~G~~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~D~Iv 129 (218)
+|+=+|+| .|.++..+++.| ..|+.+-.++.++..+++ |+ .+...+- .............+|+|+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~----GL----~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKK----GL----RIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhC----Ce----EEecCCCccccccccccChhhcCCCCEEE
Confidence 56778888 345666777877 467766655454444332 32 1111110 000010011335799999
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCC
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
..-- .-+.++.++.+.+.++++.
T Consensus 73 v~vK---a~q~~~al~~l~~~~~~~t 95 (307)
T COG1893 73 VTVK---AYQLEEALPSLAPLLGPNT 95 (307)
T ss_pred EEec---cccHHHHHHHhhhcCCCCc
Confidence 7332 3556889999999999987
No 468
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=61.15 E-value=20 Score=31.61 Aligned_cols=111 Identities=21% Similarity=0.273 Sum_probs=59.4
Q ss_pred CCCCCCCeEEEECCCCCHHHHHH--HHhC-CCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCC
Q 046623 49 HFDFQNKSVLELGAGAGLPGLTA--ARLG-ATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGE 124 (218)
Q Consensus 49 ~~~~~~~~vLDlG~G~G~~~~~l--~~~~-~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 124 (218)
.+.+..+.+.|+|+|.|.-.-.+ ...+ ...+..||.+. +......+.+...--..+.+...-+.+... .......
T Consensus 196 ~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~-pi~~~~~ 274 (491)
T KOG2539|consen 196 SPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRL-PIDIKNG 274 (491)
T ss_pred CcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccC-CCCcccc
Confidence 44566778999999876443333 3222 45799999999 888777776541000111111100111111 0114456
Q ss_pred CcEEEEcccccCC---cchHHHHHHH-HHHhcCCCceEEE
Q 046623 125 FDMVIMSDVFYDP---EEMVGLGKTL-KRVCGTGRHTVVW 160 (218)
Q Consensus 125 ~D~Iv~~~~~~~~---~~~~~~l~~~-~~lL~~gG~~~i~ 160 (218)
||+|++...++.. .......+.+ ++..++|+.++++
T Consensus 275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 9999998776653 2333344333 4456677733333
No 469
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.86 E-value=58 Score=28.64 Aligned_cols=120 Identities=23% Similarity=0.259 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCCHHHH--HHHHhCCCeEEEecCcc-hH-HHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEE
Q 046623 53 QNKSVLELGAGAGLPGL--TAARLGATRVVLTDVKP-LL-PGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMV 128 (218)
Q Consensus 53 ~~~~vLDlG~G~G~~~~--~l~~~~~~~v~~~D~~~-~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~I 128 (218)
.+++|+=+|.|....++ .+.+.|. .|++.|.++ .. ......++..+ +.+..++.. .. .-..+|+|
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~~~~~---~~---~~~~~dlV 81 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEVSNELKELG----VKLVLGENY---LD---KLDGFDVI 81 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHHHHHHHhCC----CEEEeCCCC---hH---HhccCCEE
Confidence 45689989888554344 4566676 899999876 32 22222344444 344432211 10 12458999
Q ss_pred EEcccccCC-cchHHH-------H---HHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 129 IMSDVFYDP-EEMVGL-------G---KTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 129 v~~~~~~~~-~~~~~~-------l---~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
+.++-+... +..... + +.+.+.. ...++.++.+..+..+.+.+..++...+....
T Consensus 82 V~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~ 147 (458)
T PRK01710 82 FKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTW 147 (458)
T ss_pred EECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEE
Confidence 987654321 111110 0 1112222 22456666666778888999999887777553
No 470
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=60.85 E-value=75 Score=24.49 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCCCeEEEECCCC-CH-HHHHHHHhCCCeEEEecCcc
Q 046623 52 FQNKSVLELGAGA-GL-PGLTAARLGATRVVLTDVKP 86 (218)
Q Consensus 52 ~~~~~vLDlG~G~-G~-~~~~l~~~~~~~v~~~D~~~ 86 (218)
.+..+|+=+|||. |. .+..++..|..+++.+|.+.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 3456899999874 32 33345777888899888653
No 471
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=60.76 E-value=71 Score=26.09 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=54.5
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-c---c--
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-S---E-- 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~---~-- 121 (218)
..+.++|=-|+-+|. ++..+++.|. +++.+-.+. .++.+.+.++... ...++++..|+.+...-.. . .
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhc
Confidence 345677777776664 3444567766 899999999 8888777775532 2348899999887642211 0 1
Q ss_pred CCCCcEEEEccccc
Q 046623 122 LGEFDMVIMSDVFY 135 (218)
Q Consensus 122 ~~~~D~Iv~~~~~~ 135 (218)
...+|+.|-|.-+.
T Consensus 82 ~~~IdvLVNNAG~g 95 (265)
T COG0300 82 GGPIDVLVNNAGFG 95 (265)
T ss_pred CCcccEEEECCCcC
Confidence 13799999776553
No 472
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=60.54 E-value=34 Score=28.37 Aligned_cols=92 Identities=17% Similarity=0.172 Sum_probs=50.4
Q ss_pred CeEEEECC--CCCHHHHHHHHh-CCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCc-ccc--ccCCCCcE
Q 046623 55 KSVLELGA--GAGLPGLTAARL-GATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDL-SQL--SELGEFDM 127 (218)
Q Consensus 55 ~~vLDlG~--G~G~~~~~l~~~-~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~--~~~~~~D~ 127 (218)
.+||=.|+ |.|..++.+++. |+.+|++++.++ ..+.+++. .|.. .++. ..+... ... .....+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~--~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAIN--YKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEE--CCCCCHHHHHHHHCCCCceE
Confidence 78888875 355566666654 444799988776 55555442 2322 1221 111111 111 01246898
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCCceEEEE
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWA 161 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~ 161 (218)
|+- +... ..+....++|+++|+++.+.
T Consensus 228 vid--~~g~-----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 228 YFD--NVGG-----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEE--CCCc-----HHHHHHHHHhccCCEEEEEe
Confidence 884 2211 23467788999999655543
No 473
>PRK07340 ornithine cyclodeaminase; Validated
Probab=60.52 E-value=41 Score=27.89 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=40.0
Q ss_pred CCCCeEEEECCCC-CHHHHHH-H-HhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAGA-GLPGLTA-A-RLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G~-G~~~~~l-~-~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
....+++=+|||. |...+.. . ..+..++...+.++ ..+...+.+...+ +.+...++.+ .-...|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~----~~~~~~~~~~-------av~~aDi 191 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG----PTAEPLDGEA-------IPEAVDL 191 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC----CeeEECCHHH-------HhhcCCE
Confidence 3556899999983 3333332 2 24556899999988 6666555554332 2222111111 2257899
Q ss_pred EEEcc
Q 046623 128 VIMSD 132 (218)
Q Consensus 128 Iv~~~ 132 (218)
|+..-
T Consensus 192 VitaT 196 (304)
T PRK07340 192 VVTAT 196 (304)
T ss_pred EEEcc
Confidence 99743
No 474
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=60.46 E-value=52 Score=25.98 Aligned_cols=78 Identities=22% Similarity=0.263 Sum_probs=44.8
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcchHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----ccC
Q 046623 52 FQNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKPLLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----SEL 122 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~~~ 122 (218)
.+++++|=.|++.|. ++..+++.|. +|+.++.++. +...+.....+ .++.++.+|+.+...- .. ...
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA-PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH-HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 457789988876663 2333456666 7888776542 22223333333 3477888888765411 11 123
Q ss_pred CCCcEEEEccc
Q 046623 123 GEFDMVIMSDV 133 (218)
Q Consensus 123 ~~~D~Iv~~~~ 133 (218)
++.|+++.+.-
T Consensus 82 g~iD~lv~~ag 92 (251)
T PRK12481 82 GHIDILINNAG 92 (251)
T ss_pred CCCCEEEECCC
Confidence 57999997654
No 475
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=60.41 E-value=59 Score=25.58 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=47.8
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----c-cc
Q 046623 52 FQNKSVLELGAGAGLP---GLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----L-SE 121 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~---~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~-~~ 121 (218)
.++++||=.|+.+|.- +..+++.|. +++.++.+. ..+.+...+...+ .++.++.+|+.+...- . . ..
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 85 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK 85 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999765532 223355565 788888777 6666555544433 3477788888765311 1 0 11
Q ss_pred CCCCcEEEEccc
Q 046623 122 LGEFDMVIMSDV 133 (218)
Q Consensus 122 ~~~~D~Iv~~~~ 133 (218)
.+++|+++.+..
T Consensus 86 ~~~~d~li~~ag 97 (255)
T PRK06113 86 LGKVDILVNNAG 97 (255)
T ss_pred cCCCCEEEECCC
Confidence 257899987544
No 476
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=60.37 E-value=95 Score=28.14 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=40.1
Q ss_pred CeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 55 KSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.+++=+||| ..+..+ .+.+. .++.+|.++ .++.+++. + ..++.+|..+...-....-+++|.++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~----g----~~~i~GD~~~~~~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER----G----IRAVLGNAANEEIMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC----C----CeEEEcCCCCHHHHHhcCccccCEEE
Confidence 356656665 454444 33444 899999998 77776532 2 67888887765432222346788776
Q ss_pred E
Q 046623 130 M 130 (218)
Q Consensus 130 ~ 130 (218)
+
T Consensus 487 v 487 (558)
T PRK10669 487 L 487 (558)
T ss_pred E
Confidence 5
No 477
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.22 E-value=62 Score=26.66 Aligned_cols=91 Identities=24% Similarity=0.252 Sum_probs=48.6
Q ss_pred CeEEEECCCCCH--HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHh-CC--C--------CceEEEEeecCCCCccccc
Q 046623 55 KSVLELGAGAGL--PGLTAARLGATRVVLTDVKP-LLPGLINNVEAN-GL--G--------GRVEVRELVWGSDDLSQLS 120 (218)
Q Consensus 55 ~~vLDlG~G~G~--~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-~~--~--------~~~~~~~~d~~~~~~~~~~ 120 (218)
.+|.=||+|.-. ++..+++.|. +|+.+|.++ .++.+++..... +. + .++.+. .... .
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~-~-- 75 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-----AGLA-A-- 75 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-----CCHH-H--
Confidence 357778888433 3334455554 899999998 877776643211 10 0 001111 1100 0
Q ss_pred cCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 121 ELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
.....|+|+..-+ ........++..+..+++++.
T Consensus 76 ~~~~aDlVi~av~-~~~~~~~~v~~~l~~~~~~~~ 109 (311)
T PRK06130 76 AVSGADLVIEAVP-EKLELKRDVFARLDGLCDPDT 109 (311)
T ss_pred HhccCCEEEEecc-CcHHHHHHHHHHHHHhCCCCc
Confidence 1246799997432 111234667777777776654
No 478
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=60.18 E-value=38 Score=30.10 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=63.2
Q ss_pred ECCCCC--HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcEEEEccccc
Q 046623 60 LGAGAG--LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDMVIMSDVFY 135 (218)
Q Consensus 60 lG~G~G--~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~~~~~ 135 (218)
||.|.- .++..+++.|. +|+..|.++ ..+.+.+.. ..+ ..+... .. ...+ ......|+|++.-+
T Consensus 5 IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-~~g--~~~~~~-----~s-~~e~v~~l~~~dvIil~v~-- 72 (467)
T TIGR00873 5 IGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-AKG--KKIVGA-----YS-IEEFVQSLERPRKIMLMVK-- 72 (467)
T ss_pred EeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-cCC--CCceec-----CC-HHHHHhhcCCCCEEEEECC--
Confidence 455532 33344456665 899999988 666554321 011 001110 01 1111 11235687776322
Q ss_pred CCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 136 DPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 136 ~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
.....+++++.+...|++|- +++-..+.......+..+.+ .+.|......|+.--+
T Consensus 73 ~~~~v~~Vi~~l~~~L~~g~-iIID~gns~~~~t~~~~~~l-~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 73 AGAPVDAVINQLLPLLEKGD-IIIDGGNSHYPDTERRYKEL-KAKGILFVGSGVSGGE 128 (467)
T ss_pred CcHHHHHHHHHHHhhCCCCC-EEEECCCcCHHHHHHHHHHH-HhcCCEEEcCCCCCCH
Confidence 22445677788888888775 33334333334445555555 7888888887776543
No 479
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=60.14 E-value=43 Score=24.26 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=48.9
Q ss_pred eEEEECCCCCH---HHHHHHHhCCCeEEEecCc--c-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----c-ccCC
Q 046623 56 SVLELGAGAGL---PGLTAARLGATRVVLTDVK--P-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----L-SELG 123 (218)
Q Consensus 56 ~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~--~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~-~~~~ 123 (218)
++|=.|+++|. ++..+++.|..+++.+..+ . ..+...+.++..+ .++.+..+|+.+...- . . ...+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 45666666552 3334456666688888887 4 5565555666555 5588999997755311 1 1 1346
Q ss_pred CCcEEEEcccccC
Q 046623 124 EFDMVIMSDVFYD 136 (218)
Q Consensus 124 ~~D~Iv~~~~~~~ 136 (218)
+.|+++.+.....
T Consensus 80 ~ld~li~~ag~~~ 92 (167)
T PF00106_consen 80 PLDILINNAGIFS 92 (167)
T ss_dssp SESEEEEECSCTT
T ss_pred ccccccccccccc
Confidence 8999997655543
No 480
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=59.93 E-value=35 Score=26.75 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=49.9
Q ss_pred HHHHHhCCCeEEEecCcc-hHHHHHHHHHH-hCCCCceEEEEeecCCCCcc-cc-----ccC-CCCcEEEEcccccCC--
Q 046623 69 LTAARLGATRVVLTDVKP-LLPGLINNVEA-NGLGGRVEVRELVWGSDDLS-QL-----SEL-GEFDMVIMSDVFYDP-- 137 (218)
Q Consensus 69 ~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~-~~-----~~~-~~~D~Iv~~~~~~~~-- 137 (218)
..+++.|+ +|+.++.++ ..+...+.+.. .+ ..++.+|+.+...- .. ... ++.|+++.+......
T Consensus 14 ~~l~~~Ga-~V~~~~~~~~~~~~~~~~l~~~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~~~~ 88 (241)
T PF13561_consen 14 RALAEEGA-NVILTDRNEEKLADALEELAKEYG----AEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGISPPSN 88 (241)
T ss_dssp HHHHHTTE-EEEEEESSHHHHHHHHHHHHHHTT----SEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESCTGGG
T ss_pred HHHHHCCC-EEEEEeCChHHHHHHHHHHHHHcC----CceEeecCcchHHHHHHHHHHHhhcCCCeEEEEeccccccccc
Confidence 33456666 899999998 65444444433 33 34688888654311 11 123 789988864322111
Q ss_pred --c-------------------chHHHHHHHHHHhcCCCceEEEEE
Q 046623 138 --E-------------------EMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 138 --~-------------------~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
. ....+.+.+.+.++++|.++++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 89 VEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp TSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccc
Confidence 1 123355556667888885555443
No 481
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=59.91 E-value=44 Score=27.68 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=49.5
Q ss_pred CeEEEECCC--CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCC----CceEEEEeecCCCCccccccCCCCcE
Q 046623 55 KSVLELGAG--AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLG----GRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 55 ~~vLDlG~G--~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.+|+=+|+| -|.++-.+++.|. .|+.++.++ .++..+++ .|+. ............. ...+.+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~~-----~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAETA-----DAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCCc-----ccccccCE
Confidence 368888988 3356666777765 799998875 44444321 1211 0001111100000 12357999
Q ss_pred EEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 128 VIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 128 Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
|+..-=- .+..+.++.+..++.++.
T Consensus 74 viv~vK~---~~~~~al~~l~~~l~~~t 98 (305)
T PRK05708 74 LLLACKA---YDAEPAVASLAHRLAPGA 98 (305)
T ss_pred EEEECCH---HhHHHHHHHHHhhCCCCC
Confidence 8863222 235677888888888887
No 482
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=59.88 E-value=1.6e+02 Score=27.84 Aligned_cols=90 Identities=19% Similarity=0.279 Sum_probs=58.0
Q ss_pred CeEEEECCCCCHHHHH--HHHhCCCeEEEecCcc-hHHHHHHHHHHh-------C-CC--------CceEEEEeecCCCC
Q 046623 55 KSVLELGAGAGLPGLT--AARLGATRVVLTDVKP-LLPGLINNVEAN-------G-LG--------GRVEVRELVWGSDD 115 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~--l~~~~~~~v~~~D~~~-~~~~a~~~~~~~-------~-~~--------~~~~~~~~d~~~~~ 115 (218)
.+|.=||+|+=..++. ++..|. .|+..|.++ +++.+.+.+... + +. .++.+. .|+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~---- 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY---- 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH----
Confidence 4688999997554444 466665 999999999 887766554332 1 11 112211 011
Q ss_pred ccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCC
Q 046623 116 LSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 116 ~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
......|+|+= .+....+.-.+++..+.++++|+.
T Consensus 388 ----~~~~~aDlViE-av~E~l~~K~~vf~~l~~~~~~~~ 422 (715)
T PRK11730 388 ----AGFERVDVVVE-AVVENPKVKAAVLAEVEQKVREDT 422 (715)
T ss_pred ----HHhcCCCEEEe-cccCcHHHHHHHHHHHHhhCCCCc
Confidence 02356888884 345555667889999999999986
No 483
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=59.75 E-value=36 Score=23.25 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHHHHHHHHhcCCCceEEEEE
Q 046623 87 LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLGKTLKRVCGTGRHTVVWAV 162 (218)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~ 162 (218)
+.+..++.++..|++ +++......+... ..+.+|+|+..+-. .-.++.+.+.+.+.|.-+..+.
T Consensus 16 la~km~~~a~~~gi~--~~i~a~~~~e~~~----~~~~~Dvill~PQv------~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 16 LANALNKGAKERGVP--LEAAAGAYGSHYD----MIPDYDLVILAPQM------ASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHHHHCCCc--EEEEEeeHHHHHH----hccCCCEEEEcChH------HHHHHHHHHHhhhcCCCEEEeC
Confidence 445556666677765 5565554443322 33568999985443 4467777888888775455544
No 484
>PRK06194 hypothetical protein; Provisional
Probab=59.71 E-value=60 Score=26.03 Aligned_cols=79 Identities=25% Similarity=0.300 Sum_probs=46.6
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-cc-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-QL-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~-----~ 120 (218)
.+++++|=.|+ +|.++..+ ++.|. +|+.+|.++ ..+...+.+...+ .++.++.+|+.+...- .. .
T Consensus 4 ~~~k~vlVtGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 4 FAGKVAVITGA-ASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCCCEEEEeCC-ccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 34567885554 45555544 44565 899999887 6665555544433 3477788888654311 10 1
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..+..|+++.+.-.
T Consensus 80 ~~g~id~vi~~Ag~ 93 (287)
T PRK06194 80 RFGAVHLLFNNAGV 93 (287)
T ss_pred HcCCCCEEEECCCC
Confidence 12468999976543
No 485
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=59.69 E-value=35 Score=29.04 Aligned_cols=78 Identities=19% Similarity=0.153 Sum_probs=44.0
Q ss_pred CCCCeEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc--------------------hHHHHHHHHHHhCCCCceEEEEe
Q 046623 52 FQNKSVLELGAG-AGL-PGLTAARLGATRVVLTDVKP--------------------LLPGLINNVEANGLGGRVEVREL 109 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~--------------------~~~~a~~~~~~~~~~~~~~~~~~ 109 (218)
.+..+||=+||| .|. .+..++..|..+++.+|.+. ..+.+++.+++.+-...++....
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 456799999998 343 34456788888888887553 23445555555442222333333
Q ss_pred ecCCCCccccccCCCCcEEEEc
Q 046623 110 VWGSDDLSQLSELGEFDMVIMS 131 (218)
Q Consensus 110 d~~~~~~~~~~~~~~~D~Iv~~ 131 (218)
.+...... .....+|+|+..
T Consensus 106 ~i~~~~~~--~~~~~~DvVvd~ 125 (355)
T PRK05597 106 RLTWSNAL--DELRDADVILDG 125 (355)
T ss_pred ecCHHHHH--HHHhCCCEEEEC
Confidence 33221111 123579999963
No 486
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=59.63 E-value=67 Score=24.93 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=47.3
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~ 120 (218)
.++++||=.|+ +|.++..+ ++.|. +|++++.++ ....+.+.+...+ ..+.+..+|+.+...-. . .
T Consensus 4 ~~~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 4 LEGRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 35668886665 55555554 44455 899999887 6555555554443 34788888887643110 0 0
Q ss_pred cCCCCcEEEEcccc
Q 046623 121 ELGEFDMVIMSDVF 134 (218)
Q Consensus 121 ~~~~~D~Iv~~~~~ 134 (218)
..+.+|.|+.+...
T Consensus 80 ~~~~~d~vi~~ag~ 93 (251)
T PRK12826 80 DFGRLDILVANAGI 93 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 12468998876543
No 487
>PRK06197 short chain dehydrogenase; Provisional
Probab=59.54 E-value=63 Score=26.39 Aligned_cols=81 Identities=23% Similarity=0.188 Sum_probs=46.6
Q ss_pred CCCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-----c-
Q 046623 51 DFQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-----L- 119 (218)
Q Consensus 51 ~~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~- 119 (218)
+.++++||=.|+. |.++..+ ++.|. +|+.++.++ ..+.+.+.+....-...+.++.+|+.+...-. .
T Consensus 13 ~~~~k~vlItGas-~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 13 DQSGRVAVVTGAN-TGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred cCCCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3567788877654 4444444 45565 788888776 55554444433211134778888887654111 0
Q ss_pred ccCCCCcEEEEccc
Q 046623 120 SELGEFDMVIMSDV 133 (218)
Q Consensus 120 ~~~~~~D~Iv~~~~ 133 (218)
...+.+|+++.+..
T Consensus 91 ~~~~~iD~li~nAg 104 (306)
T PRK06197 91 AAYPRIDLLINNAG 104 (306)
T ss_pred hhCCCCCEEEECCc
Confidence 11256899997654
No 488
>PRK07814 short chain dehydrogenase; Provisional
Probab=59.26 E-value=65 Score=25.55 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=47.5
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~ 120 (218)
.+++++|=.|++ |.++..+ ++.|. +|+.++.++ ..+.+.+.+...+ ..+.+..+|+.+...-. . .
T Consensus 8 ~~~~~vlItGas-ggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 8 LDDQVAVVTGAG-RGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 456788888864 4444443 45565 899999887 6666555554433 34778888877653210 0 1
Q ss_pred cCCCCcEEEEcc
Q 046623 121 ELGEFDMVIMSD 132 (218)
Q Consensus 121 ~~~~~D~Iv~~~ 132 (218)
..+++|+++.+.
T Consensus 84 ~~~~id~vi~~A 95 (263)
T PRK07814 84 AFGRLDIVVNNV 95 (263)
T ss_pred HcCCCCEEEECC
Confidence 125789998654
No 489
>PLN02780 ketoreductase/ oxidoreductase
Probab=59.21 E-value=54 Score=27.29 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=38.8
Q ss_pred CCCeEEEECCCCCH---HHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCC
Q 046623 53 QNKSVLELGAGAGL---PGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGS 113 (218)
Q Consensus 53 ~~~~vLDlG~G~G~---~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~ 113 (218)
.+..+|=.|+.+|. ++..+++.|. +|+.++.++ .++...+.++...-...+..+.+|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 36678888876653 3334456666 899999998 777766666543211246677788764
No 490
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=59.19 E-value=62 Score=25.41 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=48.8
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~ 120 (218)
.+++++|=.|+ +|.++..+ ++.|. +|+.++.++ ..+...+.++..+ .++.++.+|+.+...-. . .
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHH
Confidence 46778887775 55555554 44565 899999887 6666666655444 34777888887643111 0 1
Q ss_pred cCCCCcEEEEccc
Q 046623 121 ELGEFDMVIMSDV 133 (218)
Q Consensus 121 ~~~~~D~Iv~~~~ 133 (218)
..+..|.++.+..
T Consensus 84 ~~~~~d~li~~ag 96 (255)
T PRK07523 84 EIGPIDILVNNAG 96 (255)
T ss_pred hcCCCCEEEECCC
Confidence 2256899887654
No 491
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.05 E-value=50 Score=26.97 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=25.6
Q ss_pred eEEEECCCCCH--HHHHHHHhCCCeEEEecCcc-hHHHHHHH
Q 046623 56 SVLELGAGAGL--PGLTAARLGATRVVLTDVKP-LLPGLINN 94 (218)
Q Consensus 56 ~vLDlG~G~G~--~~~~l~~~~~~~v~~~D~~~-~~~~a~~~ 94 (218)
+|.=+|+|.=. ++..+++.|. +|+.+|.++ .++.+.+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQE 43 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Confidence 56677887322 3334455665 899999999 88776654
No 492
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=58.86 E-value=1e+02 Score=25.39 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=62.8
Q ss_pred eEEEECCCCC--HHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcccc-ccCCCCcEEEEc
Q 046623 56 SVLELGAGAG--LPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQL-SELGEFDMVIMS 131 (218)
Q Consensus 56 ~vLDlG~G~G--~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~D~Iv~~ 131 (218)
+|-=||+|.- ..+..+.+.|. +++..|.++ ..+.+. ..+. ... .. ..+. ......|+|++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~----~~g~----~~~-----~~-~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA----EEGA----TGA-----DS-LEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH----HCCC----eec-----CC-HHHHHhhcCCCCEEEEE
Confidence 3445676632 23334455555 799999988 665542 2231 111 11 1110 011135887763
Q ss_pred ccccCCcchHHHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 132 DVFYDPEEMVGLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 132 ~~~~~~~~~~~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
-+ .......++..+...+++|. +++-.++.......+..+.+ .+.|....+.|+.-.+
T Consensus 67 v~--~~~~~~~v~~~l~~~l~~g~-ivid~st~~~~~~~~~~~~~-~~~g~~~~dapvsG~~ 124 (301)
T PRK09599 67 VP--AGEITDATIDELAPLLSPGD-IVIDGGNSYYKDDIRRAELL-AEKGIHFVDVGTSGGV 124 (301)
T ss_pred ec--CCcHHHHHHHHHHhhCCCCC-EEEeCCCCChhHHHHHHHHH-HHcCCEEEeCCCCcCH
Confidence 33 22345666677777787765 33333333333344444444 8889888887776554
No 493
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=58.83 E-value=49 Score=27.06 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=52.2
Q ss_pred HHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcccccCCcchHHHH---HH
Q 046623 71 AARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSDVFYDPEEMVGLG---KT 146 (218)
Q Consensus 71 l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~~~~~~~~~~~~l---~~ 146 (218)
+++.|. +|+..|.++ ..+.+.+ .+. .. ... ..+ .....|+|++.-+. ......++ +.
T Consensus 15 L~~~G~-~V~v~dr~~~~~~~l~~----~g~----~~-----~~s-~~~--~~~~advVil~vp~--~~~~~~v~~g~~~ 75 (288)
T TIGR01692 15 LLKAGH-PVRVFDLFPDAVEEAVA----AGA----QA-----AAS-PAE--AAEGADRVITMLPA--GQHVISVYSGDEG 75 (288)
T ss_pred HHhCCC-eEEEEeCCHHHHHHHHH----cCC----ee-----cCC-HHH--HHhcCCEEEEeCCC--hHHHHHHHcCcch
Confidence 345554 899999988 6655432 221 11 111 100 22457988874331 12334444 45
Q ss_pred HHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCcEEEEEEccCCC
Q 046623 147 LKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGFRVIELTCQLGG 193 (218)
Q Consensus 147 ~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~ 193 (218)
+...+++|. +++-.++.. +.....+...+.+.|....+.|+.-.+
T Consensus 76 l~~~~~~g~-~vid~st~~-p~~~~~~~~~~~~~g~~~vdaPv~Gg~ 120 (288)
T TIGR01692 76 ILPKVAKGS-LLIDCSTID-PDSARKLAELAAAHGAVFMDAPVSGGV 120 (288)
T ss_pred HhhcCCCCC-EEEECCCCC-HHHHHHHHHHHHHcCCcEEECCCCCCH
Confidence 555566654 444444332 333334444447788888777766443
No 494
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=58.73 E-value=1.3e+02 Score=26.47 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=66.1
Q ss_pred CCCCeEEEECCC-CCHH--HHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAG-AGLP--GLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~--~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
.++++|+=+|-| +|.. +..+.+.|. +|++.|..+ .. .. .++..+ +.+..+ .. .. ....+|+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~~~--~~-~l~~~g----i~~~~~---~~-~~---~~~~~d~ 69 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKESAV--TQ-RLLELG----AIIFIG---HD-AE---NIKDADV 69 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCChH--HH-HHHHCC----CEEeCC---CC-HH---HCCCCCE
Confidence 345677777766 6655 345567776 899999876 31 22 233333 333321 11 10 1236899
Q ss_pred EEEcccccCC-cchH----------HHHHHHHHHhcCCCceEEEEEeeccCChHHHHHHHHHhCCc
Q 046623 128 VIMSDVFYDP-EEMV----------GLGKTLKRVCGTGRHTVVWAVSEVRTRTGDCLHELIMSQGF 182 (218)
Q Consensus 128 Iv~~~~~~~~-~~~~----------~~l~~~~~lL~~gG~~~i~~~~~~~~~~~~~~~~~~~~~gf 182 (218)
|+.++-+... +... .-.+.+.++++. ...+.++.+..+..+...+..+++..|.
T Consensus 70 vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~-~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 70 VVYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRF-RTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHcc-CcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 9988765421 1111 112223344432 2466777777788899999999888885
No 495
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=58.50 E-value=52 Score=26.74 Aligned_cols=81 Identities=25% Similarity=0.265 Sum_probs=45.2
Q ss_pred eEEEECCCC--CHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEEEcc
Q 046623 56 SVLELGAGA--GLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVIMSD 132 (218)
Q Consensus 56 ~vLDlG~G~--G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv~~~ 132 (218)
+|.=+|+|. |.++..+.+.|. +|+++|.++ ..+.+... +. +.... .... .....|+|+..-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~----g~---~~~~~-----~~~~---~~~~aDlVilav 65 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIER----GL---VDEAS-----TDLS---LLKDCDLVILAL 65 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHC----CC---ccccc-----CCHh---HhcCCCEEEEcC
Confidence 345567763 344455555554 899999988 76665432 21 11110 0010 124689999754
Q ss_pred cccCCcchHHHHHHHHHHhcCCC
Q 046623 133 VFYDPEEMVGLGKTLKRVCGTGR 155 (218)
Q Consensus 133 ~~~~~~~~~~~l~~~~~lL~~gG 155 (218)
+. ....++++.+...++++.
T Consensus 66 p~---~~~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 66 PI---GLLLPPSEQLIPALPPEA 85 (279)
T ss_pred CH---HHHHHHHHHHHHhCCCCc
Confidence 43 334566777777777664
No 496
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=58.29 E-value=1.1e+02 Score=25.76 Aligned_cols=94 Identities=11% Similarity=0.037 Sum_probs=46.4
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcEEE
Q 046623 52 FQNKSVLELGAG-AGLPGLTAARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDMVI 129 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~~~~l~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~Iv 129 (218)
.++.++|=.|+| .|...+.+++.-..+++.++.++ ....+.+ ..+.. .++. +-...... .....+|+++
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~---~~Ga~---~~i~-~~~~~~~~--~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALE---HLGAD---DYLV-SSDAAEMQ--EAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---hcCCc---EEec-CCChHHHH--HhcCCCcEEE
Confidence 467788877654 33444444544333778777665 4444332 23322 1111 00000010 0123578877
Q ss_pred EcccccCCcchHHHHHHHHHHhcCCCceEEE
Q 046623 130 MSDVFYDPEEMVGLGKTLKRVCGTGRHTVVW 160 (218)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~lL~~gG~~~i~ 160 (218)
- +... ...+..+.++++++|+++.+
T Consensus 250 d--~~g~----~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 250 D--TVPV----FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred E--CCCc----hHHHHHHHHHhccCCEEEEE
Confidence 3 2211 24566677899999955544
No 497
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=58.18 E-value=82 Score=26.62 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=22.9
Q ss_pred eEEEECCC-CCH-HHHHHHHhCCCeEEEecCcc-hHHHHHH
Q 046623 56 SVLELGAG-AGL-PGLTAARLGATRVVLTDVKP-LLPGLIN 93 (218)
Q Consensus 56 ~vLDlG~G-~G~-~~~~l~~~~~~~v~~~D~~~-~~~~a~~ 93 (218)
+|.=+|+| +|. ++..+++.+. .|+.+..++ ..+....
T Consensus 3 kI~ViGaGswGTALA~~la~ng~-~V~lw~r~~~~~~~i~~ 42 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGH-EVRLWGRDEEIVAEINE 42 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCC-eeEEEecCHHHHHHHHh
Confidence 56667887 442 3444566664 788888877 6655443
No 498
>PRK08267 short chain dehydrogenase; Provisional
Probab=58.02 E-value=91 Score=24.55 Aligned_cols=73 Identities=22% Similarity=0.182 Sum_probs=43.6
Q ss_pred CeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCcc-c----ccc--C
Q 046623 55 KSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLS-Q----LSE--L 122 (218)
Q Consensus 55 ~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~~~--~ 122 (218)
+++|=.|++. .++..+ ++.|. +|+.++.++ ..+.+..... + .++.++.+|+.+...- . ... .
T Consensus 2 k~vlItGasg-~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 2 KSIFITGAAS-GIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred cEEEEeCCCc-hHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3567777654 444433 45565 899999887 6665544432 2 3478888998764311 1 001 4
Q ss_pred CCCcEEEEccc
Q 046623 123 GEFDMVIMSDV 133 (218)
Q Consensus 123 ~~~D~Iv~~~~ 133 (218)
+++|+++.+..
T Consensus 76 ~~id~vi~~ag 86 (260)
T PRK08267 76 GRLDVLFNNAG 86 (260)
T ss_pred CCCCEEEECCC
Confidence 57899997543
No 499
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.81 E-value=1.3e+02 Score=26.43 Aligned_cols=122 Identities=22% Similarity=0.190 Sum_probs=68.3
Q ss_pred CCCCeEEEECCC-CCHH-HHHHHHhCCCeEEEecCcc--hHHHHHHHHHHhCCCCceEEEEeecCCCCccccccCCCCcE
Q 046623 52 FQNKSVLELGAG-AGLP-GLTAARLGATRVVLTDVKP--LLPGLINNVEANGLGGRVEVRELVWGSDDLSQLSELGEFDM 127 (218)
Q Consensus 52 ~~~~~vLDlG~G-~G~~-~~~l~~~~~~~v~~~D~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~ 127 (218)
..+++|+=+|+| +|.- +..+++.|. +|+.+|.++ ......+.++..+ +.+..++... ....+|+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~~~-------~~~~~D~ 81 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALG----ATVRLGPGPT-------LPEDTDL 81 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcC----CEEEECCCcc-------ccCCCCE
Confidence 456789999988 4432 223345565 899999665 3334445555555 4444322111 1235899
Q ss_pred EEEcccccCCcc-h----------HHHHHHHHHHhcC--CCceEEEEEeeccCChHHHHHHHHHhCCcEEE
Q 046623 128 VIMSDVFYDPEE-M----------VGLGKTLKRVCGT--GRHTVVWAVSEVRTRTGDCLHELIMSQGFRVI 185 (218)
Q Consensus 128 Iv~~~~~~~~~~-~----------~~~l~~~~~lL~~--gG~~~i~~~~~~~~~~~~~~~~~~~~~gf~~~ 185 (218)
|+.++-...... . ..-++.+.+++.+ ....+.++.+..+..+.+.+..++...|....
T Consensus 82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~ 152 (480)
T PRK01438 82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAA 152 (480)
T ss_pred EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeE
Confidence 987654422111 0 0011223344432 23356667777788888999999888777654
No 500
>PLN02253 xanthoxin dehydrogenase
Probab=57.78 E-value=50 Score=26.43 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=44.9
Q ss_pred CCCCeEEEECCCCCHHHHHH----HHhCCCeEEEecCcc-hHHHHHHHHHHhCCCCceEEEEeecCCCCccc-c-----c
Q 046623 52 FQNKSVLELGAGAGLPGLTA----ARLGATRVVLTDVKP-LLPGLINNVEANGLGGRVEVRELVWGSDDLSQ-L-----S 120 (218)
Q Consensus 52 ~~~~~vLDlG~G~G~~~~~l----~~~~~~~v~~~D~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~-----~ 120 (218)
.+++++|=.|+. |.++..+ ++.|. +|+.++.++ ..+...+.+.. ..++.++.+|+.+...-. . .
T Consensus 16 l~~k~~lItGas-~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (280)
T PLN02253 16 LLGKVALVTGGA-TGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVD 90 (280)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHH
Confidence 456778877754 4444444 45565 899998876 55544443321 234788888887653211 0 1
Q ss_pred cCCCCcEEEEcc
Q 046623 121 ELGEFDMVIMSD 132 (218)
Q Consensus 121 ~~~~~D~Iv~~~ 132 (218)
..++.|+++.+.
T Consensus 91 ~~g~id~li~~A 102 (280)
T PLN02253 91 KFGTLDIMVNNA 102 (280)
T ss_pred HhCCCCEEEECC
Confidence 125789998654
Done!