Query 046626
Match_columns 557
No_of_seqs 280 out of 3470
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.4E-61 1.8E-65 511.6 27.8 515 2-534 250-789 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.2E-53 9.2E-58 476.9 37.9 486 4-532 287-842 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.4E-29 5.3E-34 244.1 4.1 193 2-198 90-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 5E-22 1.1E-26 224.9 14.7 201 319-524 139-341 (968)
5 PLN00113 leucine-rich repeat r 99.9 6.9E-22 1.5E-26 223.8 14.0 281 268-557 140-438 (968)
6 KOG0444 Cytoskeletal regulator 99.8 3.4E-21 7.3E-26 188.9 -0.7 249 266-526 5-256 (1255)
7 PLN03210 Resistant to P. syrin 99.8 4.3E-18 9.3E-23 193.3 23.9 126 267-401 588-714 (1153)
8 KOG0444 Cytoskeletal regulator 99.8 3.7E-21 7.9E-26 188.7 -3.8 268 268-557 78-372 (1255)
9 KOG4194 Membrane glycoprotein 99.6 7.5E-17 1.6E-21 157.6 4.1 225 316-557 145-375 (873)
10 KOG4194 Membrane glycoprotein 99.6 4.2E-16 9E-21 152.5 8.5 243 295-557 80-351 (873)
11 KOG0617 Ras suppressor protein 99.6 2.9E-18 6.3E-23 141.9 -5.5 164 318-515 31-196 (264)
12 KOG0472 Leucine-rich repeat pr 99.6 1.2E-17 2.5E-22 156.3 -3.0 126 269-404 184-310 (565)
13 KOG0472 Leucine-rich repeat pr 99.6 3.3E-18 7.2E-23 159.9 -7.2 223 289-526 64-308 (565)
14 KOG0617 Ras suppressor protein 99.5 3.2E-16 6.8E-21 130.0 -2.7 154 339-525 29-183 (264)
15 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.7E-18 147.2 10.6 246 270-557 180-425 (754)
16 PRK15370 E3 ubiquitin-protein 99.5 2.6E-13 5.5E-18 144.8 11.8 226 266-526 197-426 (754)
17 PRK15387 E3 ubiquitin-protein 99.4 2.4E-12 5.3E-17 136.6 13.7 174 321-526 283-456 (788)
18 PRK15387 E3 ubiquitin-protein 99.4 1.7E-12 3.8E-17 137.7 11.2 234 268-557 222-455 (788)
19 KOG0618 Serine/threonine phosp 99.3 8.2E-14 1.8E-18 143.8 -2.0 219 293-527 241-488 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.3 2.2E-13 4.8E-18 134.5 0.3 249 277-526 7-289 (319)
21 KOG4237 Extracellular matrix p 99.3 8.7E-14 1.9E-18 130.4 -3.5 237 310-557 81-356 (498)
22 KOG0618 Serine/threonine phosp 99.3 1.2E-13 2.7E-18 142.5 -3.0 267 270-557 47-417 (1081)
23 cd00116 LRR_RI Leucine-rich re 99.2 6.7E-12 1.5E-16 123.9 2.4 236 288-525 46-317 (319)
24 KOG0532 Leucine-rich repeat (L 99.1 3.5E-12 7.7E-17 125.2 -3.8 179 311-525 89-270 (722)
25 KOG4237 Extracellular matrix p 99.0 5E-11 1.1E-15 112.2 -1.2 251 265-526 64-357 (498)
26 KOG0532 Leucine-rich repeat (L 98.9 1.2E-11 2.6E-16 121.5 -7.0 180 286-475 91-270 (722)
27 KOG4658 Apoptotic ATPase [Sign 98.9 3.3E-10 7.3E-15 123.1 1.9 203 319-531 544-763 (889)
28 COG4886 Leucine-rich repeat (L 98.9 1.5E-09 3.2E-14 110.4 5.7 128 316-446 112-240 (394)
29 COG4886 Leucine-rich repeat (L 98.8 6E-09 1.3E-13 106.0 4.7 193 324-528 97-290 (394)
30 KOG1259 Nischarin, modulator o 98.7 1.2E-09 2.5E-14 99.4 -1.4 128 365-526 282-410 (490)
31 KOG3207 Beta-tubulin folding c 98.7 4.6E-09 1E-13 100.5 2.1 156 268-424 121-281 (505)
32 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.4E-13 89.2 3.6 102 320-425 19-124 (175)
33 PLN03150 hypothetical protein; 98.7 3.2E-08 7E-13 105.5 7.4 103 322-424 420-525 (623)
34 PF14580 LRR_9: Leucine-rich r 98.6 4.4E-08 9.5E-13 85.5 4.9 128 289-424 15-150 (175)
35 KOG3207 Beta-tubulin folding c 98.5 2.3E-08 5E-13 95.8 1.1 230 288-554 116-361 (505)
36 KOG1259 Nischarin, modulator o 98.5 2.5E-08 5.4E-13 90.9 0.0 106 320-430 284-389 (490)
37 KOG2120 SCF ubiquitin ligase, 98.4 8.8E-09 1.9E-13 93.8 -5.4 60 462-525 310-373 (419)
38 PRK15386 type III secretion pr 98.4 2.5E-06 5.5E-11 83.7 11.0 162 316-529 48-214 (426)
39 PLN03150 hypothetical protein; 98.3 8.3E-07 1.8E-11 94.8 6.2 91 344-434 419-510 (623)
40 PF13855 LRR_8: Leucine rich r 98.3 7.8E-07 1.7E-11 63.5 3.8 57 321-378 2-60 (61)
41 KOG1909 Ran GTPase-activating 98.3 4.9E-08 1.1E-12 91.1 -3.6 240 286-526 23-309 (382)
42 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.9E-11 61.6 3.9 59 343-402 1-60 (61)
43 PRK15386 type III secretion pr 98.2 4E-06 8.6E-11 82.3 7.6 135 339-525 48-187 (426)
44 KOG2982 Uncharacterized conser 98.2 8.4E-07 1.8E-11 81.1 2.5 211 313-555 64-287 (418)
45 KOG1909 Ran GTPase-activating 98.2 2.6E-07 5.7E-12 86.4 -0.8 207 316-525 26-280 (382)
46 KOG0531 Protein phosphatase 1, 98.1 6.1E-07 1.3E-11 91.5 0.1 107 315-425 90-197 (414)
47 KOG2120 SCF ubiquitin ligase, 98.0 3.7E-08 8.1E-13 89.8 -8.8 179 344-555 186-371 (419)
48 KOG0531 Protein phosphatase 1, 98.0 2.1E-06 4.7E-11 87.5 1.1 127 288-423 90-217 (414)
49 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 52.3 3.7 39 321-360 2-40 (44)
50 PRK04841 transcriptional regul 97.9 0.0004 8.6E-09 79.0 17.7 204 12-252 120-332 (903)
51 PF12799 LRR_4: Leucine Rich r 97.8 3.1E-05 6.6E-10 50.6 3.5 35 343-378 1-35 (44)
52 KOG4341 F-box protein containi 97.7 2.4E-06 5.2E-11 81.9 -2.9 108 270-378 140-253 (483)
53 KOG1859 Leucine-rich repeat pr 97.7 2E-06 4.3E-11 87.9 -5.1 125 321-449 165-290 (1096)
54 KOG3665 ZYG-1-like serine/thre 97.5 0.00011 2.3E-09 78.8 4.6 133 268-404 122-263 (699)
55 KOG4579 Leucine-rich repeat (L 97.5 1.4E-05 2.9E-10 64.9 -1.8 100 322-423 29-132 (177)
56 KOG3665 ZYG-1-like serine/thre 97.4 0.00014 3E-09 77.9 4.2 130 292-424 121-260 (699)
57 KOG4579 Leucine-rich repeat (L 97.3 5.7E-05 1.2E-09 61.3 -0.1 94 314-409 47-141 (177)
58 KOG1859 Leucine-rich repeat pr 97.3 1.4E-05 3E-10 81.9 -4.8 111 311-425 178-290 (1096)
59 COG5238 RNA1 Ran GTPase-activa 97.2 3.7E-05 7.9E-10 69.8 -2.1 86 318-404 28-133 (388)
60 KOG4341 F-box protein containi 96.9 5.6E-05 1.2E-09 72.8 -4.0 218 310-528 154-385 (483)
61 KOG2982 Uncharacterized conser 96.9 0.00023 5.1E-09 65.5 -0.4 199 323-557 48-259 (418)
62 KOG1644 U2-associated snRNP A' 96.6 0.0029 6.3E-08 55.3 4.5 99 322-423 44-149 (233)
63 KOG1644 U2-associated snRNP A' 96.4 0.0052 1.1E-07 53.7 4.9 101 322-425 21-124 (233)
64 PRK06893 DNA replication initi 96.4 0.015 3.3E-07 54.0 8.2 98 15-118 93-203 (229)
65 TIGR03015 pepcterm_ATPase puta 96.3 0.073 1.6E-06 50.8 12.8 112 11-123 121-243 (269)
66 KOG2739 Leucine-rich acidic nu 96.2 0.0021 4.6E-08 58.5 1.5 38 341-378 63-102 (260)
67 PRK00080 ruvB Holliday junctio 96.1 0.056 1.2E-06 53.3 11.3 124 43-177 151-275 (328)
68 PF05729 NACHT: NACHT domain 96.1 0.019 4.2E-07 50.1 7.0 73 11-86 79-163 (166)
69 KOG2739 Leucine-rich acidic nu 95.8 0.0054 1.2E-07 56.0 2.2 88 339-428 39-130 (260)
70 TIGR00635 ruvB Holliday juncti 95.7 0.22 4.9E-06 48.5 13.4 188 13-225 81-290 (305)
71 KOG1947 Leucine rich repeat pr 95.3 0.0045 9.8E-08 64.7 -0.2 111 291-402 186-306 (482)
72 COG2909 MalT ATP-dependent tra 95.2 0.43 9.3E-06 51.3 14.0 203 12-253 128-339 (894)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.0091 2E-07 32.3 0.9 20 344-364 1-20 (22)
74 KOG1947 Leucine rich repeat pr 94.9 0.0028 6E-08 66.4 -3.0 63 316-378 184-254 (482)
75 COG5238 RNA1 Ran GTPase-activa 94.7 0.04 8.6E-07 50.7 4.3 137 287-424 86-252 (388)
76 KOG2123 Uncharacterized conser 94.5 0.0056 1.2E-07 56.2 -1.6 97 269-373 20-123 (388)
77 KOG2123 Uncharacterized conser 94.4 0.0053 1.1E-07 56.4 -2.0 81 315-397 36-123 (388)
78 PF01637 Arch_ATPase: Archaeal 94.4 0.19 4E-06 46.6 8.4 102 13-117 118-233 (234)
79 PF00560 LRR_1: Leucine Rich R 94.4 0.025 5.5E-07 30.5 1.4 20 368-388 1-20 (22)
80 PRK00411 cdc6 cell division co 94.4 5.5 0.00012 40.4 19.6 222 4-241 127-374 (394)
81 PF13504 LRR_7: Leucine rich r 92.2 0.086 1.9E-06 26.3 1.2 16 344-360 2-17 (17)
82 COG3903 Predicted ATPase [Gene 92.0 0.15 3.3E-06 50.0 3.6 203 4-222 79-290 (414)
83 PF13173 AAA_14: AAA domain 91.7 0.5 1.1E-05 39.2 6.1 73 4-78 52-127 (128)
84 PRK07471 DNA polymerase III su 91.7 1.8 4E-05 43.1 10.9 98 12-118 140-238 (365)
85 KOG0473 Leucine-rich repeat pr 91.1 0.013 2.8E-07 52.5 -4.2 82 319-402 41-122 (326)
86 KOG3864 Uncharacterized conser 91.1 0.043 9.4E-07 48.2 -1.1 20 410-429 121-140 (221)
87 TIGR03420 DnaA_homol_Hda DnaA 90.5 1.8 3.9E-05 39.9 9.2 101 15-121 92-204 (226)
88 KOG0473 Leucine-rich repeat pr 90.1 0.012 2.6E-07 52.6 -5.3 88 338-427 37-124 (326)
89 PRK13342 recombination factor 89.7 1.7 3.6E-05 44.4 8.9 106 11-121 90-199 (413)
90 PRK09087 hypothetical protein; 89.4 3.2 6.9E-05 38.3 9.7 95 15-117 89-194 (226)
91 TIGR00678 holB DNA polymerase 89.2 2 4.4E-05 38.3 8.2 91 12-113 95-186 (188)
92 PRK06645 DNA polymerase III su 88.8 4.1 8.9E-05 42.5 11.0 100 11-115 126-226 (507)
93 PF13306 LRR_5: Leucine rich r 87.9 1 2.2E-05 37.2 5.0 100 316-422 8-111 (129)
94 TIGR02903 spore_lon_C ATP-depe 87.9 2.3 4.9E-05 45.8 8.7 115 2-121 281-398 (615)
95 PRK05564 DNA polymerase III su 87.6 4.9 0.00011 39.3 10.3 96 12-116 92-188 (313)
96 PRK14961 DNA polymerase III su 87.0 6.1 0.00013 39.5 10.7 100 12-116 118-218 (363)
97 KOG3864 Uncharacterized conser 86.5 0.11 2.4E-06 45.8 -1.7 63 464-526 124-187 (221)
98 PRK08727 hypothetical protein; 86.3 5.4 0.00012 37.0 9.3 95 15-115 95-201 (233)
99 PRK14963 DNA polymerase III su 85.9 6.1 0.00013 41.3 10.3 99 12-115 115-214 (504)
100 PF13306 LRR_5: Leucine rich r 85.3 2.8 6.1E-05 34.4 6.4 103 288-400 7-112 (129)
101 PRK09112 DNA polymerase III su 84.7 8.1 0.00018 38.3 10.1 101 12-119 140-241 (351)
102 PRK08084 DNA replication initi 84.5 8.3 0.00018 35.8 9.7 95 16-116 100-207 (235)
103 PF00308 Bac_DnaA: Bacterial d 84.1 4.1 8.8E-05 37.4 7.3 104 6-116 91-206 (219)
104 PRK12402 replication factor C 84.0 10 0.00022 37.4 10.8 100 13-117 125-225 (337)
105 PRK07003 DNA polymerase III su 83.8 8.4 0.00018 41.9 10.2 103 12-119 118-222 (830)
106 COG3899 Predicted ATPase [Gene 83.7 11 0.00025 42.2 11.8 163 11-179 152-325 (849)
107 PRK07940 DNA polymerase III su 83.3 8.3 0.00018 38.9 9.6 95 12-116 116-211 (394)
108 PRK05642 DNA replication initi 83.2 9.4 0.0002 35.5 9.4 97 16-118 100-208 (234)
109 PRK06620 hypothetical protein; 83.1 15 0.00034 33.5 10.6 90 14-112 86-183 (214)
110 smart00370 LRR Leucine-rich re 82.7 0.8 1.7E-05 25.6 1.3 19 343-362 2-20 (26)
111 smart00369 LRR_TYP Leucine-ric 82.7 0.8 1.7E-05 25.6 1.3 19 343-362 2-20 (26)
112 TIGR02397 dnaX_nterm DNA polym 81.8 19 0.00041 35.8 11.8 103 12-119 116-219 (355)
113 PRK14960 DNA polymerase III su 80.8 15 0.00033 39.4 10.7 101 12-117 117-218 (702)
114 PRK08691 DNA polymerase III su 80.8 16 0.00035 39.4 11.0 99 12-116 118-218 (709)
115 PRK14959 DNA polymerase III su 80.0 16 0.00035 39.0 10.6 107 11-122 117-225 (624)
116 PLN03025 replication factor C 79.6 30 0.00066 33.8 12.1 99 12-115 98-197 (319)
117 PRK08903 DnaA regulatory inact 78.8 19 0.0004 33.2 9.8 103 15-123 92-204 (227)
118 PRK12323 DNA polymerase III su 78.7 15 0.00033 39.3 9.8 102 11-117 122-224 (700)
119 PRK14087 dnaA chromosomal repl 76.6 16 0.00034 37.7 9.4 104 15-122 208-323 (450)
120 smart00367 LRR_CC Leucine-rich 76.1 1.7 3.7E-05 24.3 1.3 16 514-529 1-16 (26)
121 PRK05707 DNA polymerase III su 75.8 18 0.00039 35.5 9.1 96 13-118 107-203 (328)
122 PRK14955 DNA polymerase III su 75.7 20 0.00043 36.4 9.8 101 12-117 126-227 (397)
123 PRK00440 rfc replication facto 75.4 30 0.00065 33.7 10.8 99 13-116 102-201 (319)
124 PRK14949 DNA polymerase III su 75.1 20 0.00043 40.0 9.8 103 11-118 117-220 (944)
125 PRK04195 replication factor C 72.2 90 0.002 32.6 13.8 164 13-197 98-271 (482)
126 PRK14957 DNA polymerase III su 71.9 35 0.00075 36.1 10.5 103 11-118 117-221 (546)
127 PRK08451 DNA polymerase III su 71.8 34 0.00074 36.0 10.4 102 12-118 116-218 (535)
128 PRK14956 DNA polymerase III su 71.8 28 0.00061 35.9 9.6 99 11-114 119-218 (484)
129 TIGR02928 orc1/cdc6 family rep 71.6 1.1E+02 0.0024 30.4 19.7 209 5-225 119-351 (365)
130 KOG0989 Replication factor C, 71.5 15 0.00032 35.1 6.8 92 16-111 132-223 (346)
131 PF14516 AAA_35: AAA-like doma 71.1 83 0.0018 31.0 12.6 53 66-125 194-246 (331)
132 PRK07994 DNA polymerase III su 71.0 31 0.00067 37.2 10.0 103 11-118 117-220 (647)
133 PRK14964 DNA polymerase III su 71.0 32 0.0007 35.8 9.9 98 12-114 115-213 (491)
134 PRK06305 DNA polymerase III su 69.8 59 0.0013 33.6 11.6 97 12-113 120-217 (451)
135 PRK04132 replication factor C 69.2 56 0.0012 36.5 11.7 103 13-120 630-733 (846)
136 PRK13341 recombination factor 68.6 42 0.0009 37.0 10.6 97 12-113 108-212 (725)
137 PRK07764 DNA polymerase III su 68.4 59 0.0013 36.4 11.9 100 11-115 118-218 (824)
138 COG2256 MGS1 ATPase related to 68.3 38 0.00083 33.7 9.1 100 9-114 100-208 (436)
139 COG1373 Predicted ATPase (AAA+ 67.3 34 0.00074 34.7 9.2 66 13-81 94-162 (398)
140 PRK14954 DNA polymerase III su 67.2 72 0.0016 34.4 11.9 97 12-113 126-223 (620)
141 PRK14950 DNA polymerase III su 67.1 56 0.0012 35.2 11.2 102 12-118 119-221 (585)
142 PRK14970 DNA polymerase III su 67.0 64 0.0014 32.3 11.1 97 12-113 107-204 (367)
143 PRK07133 DNA polymerase III su 67.0 70 0.0015 35.0 11.7 98 12-115 117-216 (725)
144 cd00561 CobA_CobO_BtuR ATP:cor 66.3 10 0.00022 32.7 4.4 49 5-53 86-138 (159)
145 TIGR01242 26Sp45 26S proteasom 64.6 26 0.00056 35.1 7.7 67 42-112 260-328 (364)
146 PRK14951 DNA polymerase III su 64.0 77 0.0017 34.2 11.3 101 12-117 123-224 (618)
147 PRK06871 DNA polymerase III su 63.9 89 0.0019 30.6 10.9 94 12-115 106-200 (325)
148 PRK08769 DNA polymerase III su 63.2 56 0.0012 31.9 9.4 96 12-118 112-208 (319)
149 smart00364 LRR_BAC Leucine-ric 62.1 4.3 9.3E-05 22.8 0.9 15 322-336 4-18 (26)
150 PRK14962 DNA polymerase III su 62.0 64 0.0014 33.5 10.1 105 12-121 116-222 (472)
151 PRK09111 DNA polymerase III su 61.4 66 0.0014 34.6 10.3 101 12-117 131-232 (598)
152 PRK05896 DNA polymerase III su 59.5 74 0.0016 34.0 10.1 102 14-120 120-223 (605)
153 PRK14953 DNA polymerase III su 59.5 1.1E+02 0.0025 31.9 11.4 102 12-118 118-220 (486)
154 COG0593 DnaA ATPase involved i 59.4 38 0.00082 34.2 7.6 96 16-116 178-288 (408)
155 PRK14969 DNA polymerase III su 59.4 96 0.0021 32.8 11.0 102 12-118 118-221 (527)
156 PRK06647 DNA polymerase III su 58.9 86 0.0019 33.4 10.6 100 11-115 117-217 (563)
157 PRK14971 DNA polymerase III su 58.8 77 0.0017 34.2 10.4 99 12-115 120-219 (614)
158 PRK07399 DNA polymerase III su 58.1 1E+02 0.0022 30.0 10.3 98 12-118 123-221 (314)
159 PF13516 LRR_6: Leucine Rich r 56.2 4.2 9.2E-05 22.1 0.2 10 344-353 3-12 (24)
160 smart00365 LRR_SD22 Leucine-ri 55.7 9 0.00019 21.6 1.5 16 390-405 1-16 (26)
161 PRK14086 dnaA chromosomal repl 55.3 68 0.0015 34.4 9.0 90 16-111 380-481 (617)
162 PRK06964 DNA polymerase III su 54.5 1.4E+02 0.0031 29.5 10.6 94 12-118 131-225 (342)
163 PF02463 SMC_N: RecF/RecN/SMC 53.8 16 0.00034 33.5 3.8 46 14-59 159-205 (220)
164 PRK14958 DNA polymerase III su 51.9 1.4E+02 0.003 31.5 10.6 99 12-115 118-217 (509)
165 PRK14948 DNA polymerase III su 51.8 1.8E+02 0.0039 31.5 11.7 102 12-118 120-222 (620)
166 PRK14952 DNA polymerase III su 50.9 1.5E+02 0.0033 31.8 10.8 104 12-120 117-222 (584)
167 cd00009 AAA The AAA+ (ATPases 50.0 32 0.0007 28.3 5.0 45 10-54 81-131 (151)
168 TIGR00362 DnaA chromosomal rep 48.7 95 0.0021 31.6 8.9 93 16-114 202-306 (405)
169 PF07725 LRR_3: Leucine Rich R 47.4 16 0.00034 19.1 1.5 19 321-339 1-19 (20)
170 PRK06090 DNA polymerase III su 47.2 1.6E+02 0.0035 28.8 9.6 93 13-118 108-201 (319)
171 TIGR02880 cbbX_cfxQ probable R 47.0 1.5E+02 0.0032 28.4 9.4 76 13-88 121-210 (284)
172 PRK14965 DNA polymerase III su 47.0 1.4E+02 0.003 32.1 9.9 102 12-118 118-221 (576)
173 PRK07993 DNA polymerase III su 46.4 1.7E+02 0.0038 28.8 9.9 94 12-115 107-201 (334)
174 PRK00149 dnaA chromosomal repl 42.1 1.3E+02 0.0028 31.2 8.7 95 15-115 213-319 (450)
175 PF13401 AAA_22: AAA domain; P 41.9 22 0.00048 29.1 2.5 48 3-52 76-125 (131)
176 PRK05563 DNA polymerase III su 41.8 2.3E+02 0.005 30.3 10.6 99 11-114 117-216 (559)
177 PRK07414 cob(I)yrinic acid a,c 41.4 40 0.00086 29.6 4.0 50 4-53 105-158 (178)
178 PRK12422 chromosomal replicati 41.1 2.8E+02 0.0061 28.6 10.8 90 15-110 204-305 (445)
179 TIGR00708 cobA cob(I)alamin ad 41.1 35 0.00075 29.9 3.6 50 4-53 87-140 (173)
180 PRK05986 cob(I)alamin adenolsy 40.5 42 0.00091 29.9 4.1 49 5-53 106-158 (191)
181 PRK14088 dnaA chromosomal repl 40.2 2.1E+02 0.0045 29.6 9.7 93 13-111 194-298 (440)
182 PF02572 CobA_CobO_BtuR: ATP:c 39.6 33 0.00072 30.0 3.3 51 4-54 86-140 (172)
183 PTZ00112 origin recognition co 39.4 1.8E+02 0.004 32.8 9.2 56 68-123 931-987 (1164)
184 CHL00181 cbbX CbbX; Provisiona 36.7 3.4E+02 0.0073 26.1 10.0 76 14-89 123-212 (287)
185 smart00368 LRR_RI Leucine rich 36.0 25 0.00053 20.0 1.3 13 321-333 3-15 (28)
186 TIGR01128 holA DNA polymerase 33.7 4.3E+02 0.0093 25.2 10.9 99 11-115 44-150 (302)
187 PF13177 DNA_pol3_delta2: DNA 33.3 62 0.0013 27.9 4.0 42 13-54 102-143 (162)
188 KOG4308 LRR-containing protein 33.0 2.9 6.2E-05 43.3 -5.0 141 289-429 111-277 (478)
189 PF07693 KAP_NTPase: KAP famil 32.3 1.8E+02 0.004 28.2 7.8 57 3-59 160-220 (325)
190 PRK07132 DNA polymerase III su 32.1 2.6E+02 0.0056 27.1 8.4 95 12-117 89-184 (299)
191 COG2109 BtuR ATP:corrinoid ade 31.2 89 0.0019 27.7 4.5 50 4-53 112-165 (198)
192 PF06144 DNA_pol3_delta: DNA p 29.9 3.5E+02 0.0077 23.1 8.9 98 13-115 57-163 (172)
193 PRK08116 hypothetical protein; 29.2 64 0.0014 30.6 3.7 44 8-52 174-220 (268)
194 PRK03992 proteasome-activating 28.8 2.9E+02 0.0063 27.9 8.5 65 43-111 270-336 (389)
195 PRK08058 DNA polymerase III su 27.6 1.9E+02 0.0042 28.4 6.9 72 12-85 109-181 (329)
196 PHA02544 44 clamp loader, smal 26.7 1.8E+02 0.0039 28.2 6.6 70 13-84 100-171 (316)
197 PF05496 RuvB_N: Holliday junc 26.0 3E+02 0.0066 25.4 7.1 104 13-120 101-223 (233)
198 KOG3763 mRNA export factor TAP 25.8 44 0.00095 34.7 2.0 65 317-382 215-285 (585)
199 PF02562 PhoH: PhoH-like prote 25.6 83 0.0018 28.4 3.5 39 14-55 120-158 (205)
200 COG3267 ExeA Type II secretory 25.4 3.6E+02 0.0078 25.4 7.5 108 11-120 128-247 (269)
201 cd03285 ABC_MSH2_euk MutS2 hom 21.7 1.2E+02 0.0026 27.8 4.0 105 12-123 108-218 (222)
202 TIGR02881 spore_V_K stage V sp 21.7 6E+02 0.013 23.8 8.9 75 14-88 106-193 (261)
203 KOG2035 Replication factor C, 21.1 7.5E+02 0.016 23.8 9.5 45 67-114 180-224 (351)
204 PF14050 Nudc_N: N-terminal co 20.6 1.7E+02 0.0036 20.6 3.5 32 97-128 3-34 (62)
205 PF05673 DUF815: Protein of un 20.2 7.2E+02 0.016 23.3 12.2 47 11-57 104-155 (249)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-61 Score=511.60 Aligned_cols=515 Identities=29% Similarity=0.418 Sum_probs=387.5
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHH-hcCCCCCCcEEcCCCChhhhHH
Q 046626 2 LQQIMRSCLNGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASI-MGTMRGTGGYKLEGLPYESCLS 80 (557)
Q Consensus 2 l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~-~~~~~~~~~~~~~~L~~~~a~~ 80 (557)
++..|.+.|++|||+|||||||+. ..|+.+..++|....||||++|||++.|+.. +++.. .++++.|..+|||+
T Consensus 250 ~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~---~~~v~~L~~~eaW~ 324 (889)
T KOG4658|consen 250 LASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY---PIEVECLTPEEAWD 324 (889)
T ss_pred HHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc---cccccccCccccHH
Confidence 567899999999999999999977 4599999999999889999999999999988 77755 89999999999999
Q ss_pred HHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHHHHHHhhhccc----cccccCCchhhHhhc
Q 046626 81 LFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIWK----LEQKENDILPALKLS 156 (557)
Q Consensus 81 Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w~~l~~~~~~~----~~~~~~~i~~~L~~s 156 (557)
||++.||......++.+.++|+++|++|+|+|||+.++|+.|+.+.+.++|+++.+...+. .....+.++.+|+.|
T Consensus 325 LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklS 404 (889)
T KOG4658|consen 325 LFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLS 404 (889)
T ss_pred HHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhcc
Confidence 9999999886666677999999999999999999999999999999999999988865443 222356889999999
Q ss_pred ccCCChhhHHHhhhhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCceeccCCCCCCCccee
Q 046626 157 YDQLPPHLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQDFSNGMLPEGFEIF 236 (557)
Q Consensus 157 y~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~~~~~~~~~~~~~ 236 (557)
||.|+++.|.||+|||.||+|++++++.++.+|+||||+....+...+++.|+.++.+|++++++...... +...
T Consensus 405 yd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~-----~~~~ 479 (889)
T KOG4658|consen 405 YDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE-----GRKE 479 (889)
T ss_pred HhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc-----ccee
Confidence 99999889999999999999999999999999999999998777888999999999999999999876532 4567
Q ss_pred EEEEcHHHHHHHHHHhc-----CCeEEeccC-------CCCCCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCC
Q 046626 237 FFKMHDLMHDLAQLVAK-----GEFLIVGSD-------CQSIPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPIND 304 (557)
Q Consensus 237 ~~~~h~~i~~l~~~~~~-----~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 304 (557)
.|+|||++|++|.+++. .+..++..+ ....+..++++++.++..... ..-..++.+++|.+..+.
T Consensus 480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 480 TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNS 556 (889)
T ss_pred EEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEEEeecc
Confidence 99999999999999998 554444432 122335678888888776554 334456689999998654
Q ss_pred ccchhHHHHHHhhcCCCcceEeeCCC-ChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccc
Q 046626 305 EKTNQSILTSCISKSQFLRVIDLSET-AIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEEL 383 (557)
Q Consensus 305 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~ 383 (557)
. ........+|..++.|++|||++| .+.++|.+++.|.+||||+++++. +..+|.++++|..|.+||+..+..+..+
T Consensus 557 ~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 557 D-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred h-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccc
Confidence 2 133455666889999999999965 466999999999999999999974 9999999999999999999998877777
Q ss_pred cccccCCCCCcEEEccccccc---ccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccc
Q 046626 384 PKDIRYLVSLRMFMVSTKQKS---LLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDR 460 (557)
Q Consensus 384 p~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~ 460 (557)
|..+..|++||+|.+...... ..-..+.+|.+|+.+....++. .+-........+..................+.
T Consensus 635 ~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~ 712 (889)
T KOG4658|consen 635 PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISS 712 (889)
T ss_pred cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccceeecc
Confidence 777778999999998876532 1223345566666665544332 01011111111111110000000111222334
Q ss_pred cCCCCCcceEEEeCCCCCCCCChhhc---cCC-CcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCC
Q 046626 461 NKTRLHLRKLFVEGLPPLLELPQWLL---QGS-TKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKP 534 (557)
Q Consensus 461 ~~~~~~L~~L~l~~~~~l~~lp~~~~---~~~-l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~ 534 (557)
...+.+|+.|.+.+|........+.. ... ++++..+.+.+|.... .+.+....|+|+.|.+..|+.++.+...
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-ccchhhccCcccEEEEecccccccCCCH
Confidence 46677888888888766432222210 011 4456666666665433 3444455677777777777666544433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.2e-53 Score=476.86 Aligned_cols=486 Identities=24% Similarity=0.353 Sum_probs=367.1
Q ss_pred HHHHHHcCCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcCCCCCCcEEcCCCChhhhHHHHH
Q 046626 4 QIMRSCLNGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGTMRGTGGYKLEGLPYESCLSLFM 83 (557)
Q Consensus 4 ~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~ 83 (557)
..++++|++||+||||||||+ ...|+.+.......++|||||||||+++++..++... .|+|+.+++++||+||+
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~---~~~v~~l~~~ea~~LF~ 361 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDH---IYEVCLPSNELALEMFC 361 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCe---EEEecCCCHHHHHHHHH
Confidence 457889999999999999964 4678888877766678999999999999998776655 89999999999999999
Q ss_pred HHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHHHHHHhhhccccccccCCchhhHhhcccCCCh-
Q 046626 84 KCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIWKLEQKENDILPALKLSYDQLPP- 162 (557)
Q Consensus 84 ~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w~~l~~~~~~~~~~~~~~i~~~L~~sy~~L~~- 162 (557)
++||+...+ .+++.+++++|+++|+|+||||+++|+.|+++ +...|+.+.++... ..+++|..+|++||++|++
T Consensus 362 ~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~---~~~~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 362 RSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN---GLDGKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred HHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh---CccHHHHHHHHHhhhccCcc
Confidence 999987654 36789999999999999999999999999986 67889887765432 2346899999999999986
Q ss_pred hhHHHhhhhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCceeccCCCCCCCcceeEEEEcH
Q 046626 163 HLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQDFSNGMLPEGFEIFFFKMHD 242 (557)
Q Consensus 163 ~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~~~~~~~~~~~~~~~~~h~ 242 (557)
.+|.||++|||||.+..++ .+..|.+.+.+... .-++.|+++++++... ..++|||
T Consensus 437 ~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~-----------~~l~~L~~ksLi~~~~----------~~~~MHd 492 (1153)
T PLN03210 437 KDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN-----------IGLKNLVDKSLIHVRE----------DIVEMHS 492 (1153)
T ss_pred chhhhhheehhhcCCCCHH---HHHHHHHhcCCCch-----------hChHHHHhcCCEEEcC----------CeEEhhh
Confidence 5999999999999887654 35667776544321 1288899999997642 1589999
Q ss_pred HHHHHHHHHhcCCe--------EEecc------CCCCCCCceEEEEeecCCCCcccc-cccccCCCCCcEEEecCCCcc-
Q 046626 243 LMHDLAQLVAKGEF--------LIVGS------DCQSIPKRVCHLSFVGANTSRNDF-SSLLSDLRRARTILFPINDEK- 306 (557)
Q Consensus 243 ~i~~l~~~~~~~~~--------~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~- 306 (557)
++++||+.+++.+. ++... ........++.+.+.........+ ...+.++++|+.|.+..+...
T Consensus 493 Ll~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~ 572 (1153)
T PLN03210 493 LLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ 572 (1153)
T ss_pred HHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc
Confidence 99999999987653 11100 001222344444443332222111 223556666666655322100
Q ss_pred --------------------------chhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccc
Q 046626 307 --------------------------TNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLP 360 (557)
Q Consensus 307 --------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp 360 (557)
.....+|..+ .+.+|+.|+++++.+..+|.++..+++|++|+|++|..++.+|
T Consensus 573 ~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 573 KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred cccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC
Confidence 0011122222 3578999999999999999999999999999999988788998
Q ss_pred hhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccc-cccccccCcCCCCCCCeecccccccccccccceEeccc
Q 046626 361 NSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTK-QKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKD 439 (557)
Q Consensus 361 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~ 439 (557)
. ++.+++|++|++++|..+..+|..++++++|+.|++++| .+..+|..+ ++++|+.|++++|..++.+|.. ..+
T Consensus 652 ~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~n 726 (1153)
T PLN03210 652 D-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STN 726 (1153)
T ss_pred c-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCC
Confidence 6 889999999999999999999999999999999999986 455777766 7999999999999888877632 234
Q ss_pred CCCccccCcccccccccc--------------------------ccccCCCCCcceEEEeCCCCCCCCChhhccCCCccc
Q 046626 440 CESLNLNLNIEMEGEESH--------------------------CDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTL 493 (557)
Q Consensus 440 l~~l~l~~~~~~~~~~~~--------------------------~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L 493 (557)
++.|+++.+.....+... ......+++|+.|.+++|+.+..+|.++ +.+++|
T Consensus 727 L~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L 804 (1153)
T PLN03210 727 ISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKL 804 (1153)
T ss_pred cCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh--hCCCCC
Confidence 444444443311110000 0001124689999999999999999998 899999
Q ss_pred ceEecccccccccCCccCCCCCCcceeeecCCCcccccc
Q 046626 494 KNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERC 532 (557)
Q Consensus 494 ~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~ 532 (557)
+.|+|++|..++.+|..+ ++++|+.|++++|..+..++
T Consensus 805 ~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 805 EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 999999999999999866 79999999999998887654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.95 E-value=2.4e-29 Score=244.13 Aligned_cols=193 Identities=39% Similarity=0.619 Sum_probs=147.9
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcCCCCCCcEEcCCCChhhhHHH
Q 046626 2 LQQIMRSCLNGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGTMRGTGGYKLEGLPYESCLSL 81 (557)
Q Consensus 2 l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~~~~~~~~~~~~L~~~~a~~L 81 (557)
+.+.+++.|+++|+||||||||+. ..|+.+...++.+..|||||||||+..++..++.. ...|++++|+.++|++|
T Consensus 90 ~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~L 165 (287)
T PF00931_consen 90 LQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--DKVIELEPLSEEEALEL 165 (287)
T ss_dssp HHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSC--EEEEECSS--HHHHHHH
T ss_pred ccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccc--ccccccccccccccccc
Confidence 467899999999999999999754 58888888887777899999999999988766541 23799999999999999
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHHHHHHhhhcccccc---ccCCchhhHhhccc
Q 046626 82 FMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIWKLEQ---KENDILPALKLSYD 158 (557)
Q Consensus 82 f~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w~~l~~~~~~~~~~---~~~~i~~~L~~sy~ 158 (557)
|++.++.......+...+.+++|+++|+|+|+||+++|+.|+.+.....|+.+.+........ ....+..++..||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~ 245 (287)
T PF00931_consen 166 FKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYD 245 (287)
T ss_dssp HHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechh
Confidence 999998766222355677899999999999999999999997666778888877653333211 24678899999999
Q ss_pred CCChhhHHHhhhhccCCCCcccChHHHHHHHHHcCCccCC
Q 046626 159 QLPPHLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSP 198 (557)
Q Consensus 159 ~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~ 198 (557)
.|+++.|.||++||+||+++.++.+.++++|+++|+++..
T Consensus 246 ~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 246 SLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999999999999999999999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=5e-22 Score=224.89 Aligned_cols=201 Identities=23% Similarity=0.231 Sum_probs=94.9
Q ss_pred CCCcceEeeCCCChh-hhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 319 SQFLRVIDLSETAIE-VLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 319 ~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 444555555555544 3444455555555555555543344555555555555555555554444555555555555555
Q ss_pred ccccccc-ccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCC
Q 046626 398 VSTKQKS-LLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLP 476 (557)
Q Consensus 398 l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 476 (557)
+++|.+. .+|..++.+++|++|++++|.....+|..+..+.+++.|+++.|..... .......+.+|++|+++++.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP---IPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc---CchhHhhccCcCEEECcCCe
Confidence 5555444 4444555555555555555444344444444444455554444321110 00111233444444444443
Q ss_pred CCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecC
Q 046626 477 PLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGG 524 (557)
Q Consensus 477 ~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~ 524 (557)
....+|.++ ..+++|+.|++++|...+.+|..+..+++|+.|++++
T Consensus 296 l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 296 LSGEIPELV--IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred eccCCChhH--cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 333344444 4444455555544444444444444444444444444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=6.9e-22 Score=223.80 Aligned_cols=281 Identities=20% Similarity=0.152 Sum_probs=152.1
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChh-hhccccCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIE-VLSREIGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~ 346 (557)
..++.+.+.++..... ++..+..+++|++|.+..+... ...|..+.++++|++|++++|.+. .+|..++++++|+
T Consensus 140 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 140 PNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLV---GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred CCCCEEECcCCccccc-CChHHhcCCCCCEEECccCccc---ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 3455555555544322 3344555666666666544322 223444556666666666666655 4555666666666
Q ss_pred eeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccc-ccccCcCCCCCCCeecccccc
Q 046626 347 YLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS-LLESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~ 425 (557)
+|++++|.....+|..++.+++|++|++++|.....+|..++++++|+.|++++|.+. .+|..++.+++|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 6666666544456666666666666666666555566666666666666666666554 455556666666666666655
Q ss_pred cccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccc
Q 046626 426 NLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFM 505 (557)
Q Consensus 426 ~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~ 505 (557)
....+|..+..+.+++.|+++.|...... ......+++|+.|+++++.....+|.++ +.+++|+.|++++|...+
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKI---PVALTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcC---ChhHhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEe
Confidence 44455555555556666665554321111 1112345566666666654444555555 555666666666665555
Q ss_pred cCCccCCCCCCcceeeecCCCcccccc----------------CCCCCCCCCcccccCceeeCCCCCC
Q 046626 506 ALPESLRNLEALETLAIGGCPALSERC----------------KPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 506 ~lp~~l~~l~~L~~L~l~~c~~l~~~~----------------~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
.+|.++..+++|+.|++++|.-...++ +...+..+..+..+++|+.+++++|
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 555555555555555554432111000 1222333445566677777777665
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=3.4e-21 Score=188.89 Aligned_cols=249 Identities=20% Similarity=0.271 Sum_probs=212.1
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCcc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHL 345 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L 345 (557)
+.+-++.+.+.+++++...||.....++++++|.+.. ......|..++.+.+|..|.+.+|++.++...++.|+.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr----t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR----TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEech----hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 4456788889999999888999999999999999863 234678888999999999999999999999999999999
Q ss_pred CeeeccCCcC-ccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccC-cCCCCCCCeecccc
Q 046626 346 RYLDLSDNDK-IKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESG-IGCLSSLRFLMISD 423 (557)
Q Consensus 346 ~~L~l~~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~ 423 (557)
+.+.++.|+. ...+|..+..|..|.+|||+.|+ +.++|..+.+-+++-+|++++|++..+|.. +.+|+.|-.|+|++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 9999999862 23689999999999999999987 889999999999999999999999988754 66899999999997
Q ss_pred cccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCC-CCCCChhhccCCCcccceEeccccc
Q 046626 424 CENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPP-LLELPQWLLQGSTKTLKNLIIRNCP 502 (557)
Q Consensus 424 c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~lp~~~~~~~l~~L~~L~L~~c~ 502 (557)
+.++.+|.++-.+.++++|.|+.|+..- .-...+....+|+.|.+++... +..+|.++ ..+.||..++++.|.
T Consensus 160 -NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h---fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 160 -NRLEMLPPQIRRLSMLQTLKLSNNPLNH---FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSENN 233 (1255)
T ss_pred -chhhhcCHHHHHHhhhhhhhcCCChhhH---HHHhcCccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccccC
Confidence 7899999999999999999999886321 1111223455677777776433 44689998 899999999999886
Q ss_pred ccccCCccCCCCCCcceeeecCCC
Q 046626 503 NFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 503 ~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
+..+|+++-++++|+.|+|+++.
T Consensus 234 -Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 234 -LPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred -CCcchHHHhhhhhhheeccCcCc
Confidence 77899999999999999999953
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=4.3e-18 Score=193.33 Aligned_cols=126 Identities=25% Similarity=0.276 Sum_probs=77.2
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCC-hhhhccccCCCCcc
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETA-IEVLSREIGNLKHL 345 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~~~~l~~L 345 (557)
+..++.+.+.++..... +..+ ...+|+.|.+..+.. ..++..+..+++|+.|+++++. +..+| .++.+++|
T Consensus 588 p~~Lr~L~~~~~~l~~l--P~~f-~~~~L~~L~L~~s~l----~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~L 659 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCM--PSNF-RPENLVKLQMQGSKL----EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNL 659 (1153)
T ss_pred CcccEEEEecCCCCCCC--CCcC-CccCCcEEECcCccc----cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcc
Confidence 34455555555443332 2222 345666666654332 2234445667777777777654 44444 46677777
Q ss_pred CeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccc
Q 046626 346 RYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTK 401 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 401 (557)
+.|+|++|..+..+|.+++.+++|+.|++++|..+..+|..+ ++++|+.|++++|
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 777777777677777777777777777777777777777655 5556666655554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=3.7e-21 Score=188.65 Aligned_cols=268 Identities=21% Similarity=0.236 Sum_probs=162.2
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~ 346 (557)
+.+|.+.+..++.....+|..+-.+..|.+++++.|.. ...|..+...+++-+|+|++|+|..+|.+ +-+|+.|-
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL----~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL----REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhh----hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 45566666677777777788888889999999886553 44566677788899999999999988876 56888899
Q ss_pred eeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccc--ccccCcCCCCCCCeeccccc
Q 046626 347 YLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS--LLESGIGCLSSLRFLMISDC 424 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~c 424 (557)
+|+||+|. ++.+|+.+..|.+|++|+|++|+....--.-+..+++|++|.+++.+-+ .+|.++..|.+|..++++.
T Consensus 154 fLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~- 231 (1255)
T KOG0444|consen 154 FLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE- 231 (1255)
T ss_pred hhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-
Confidence 99999874 8999998999999999999988642110011123445555555554333 4455555555555555553
Q ss_pred ccccccccceEecccCCCccccCc-----------------------cccccccccccccCCCCCcceEEEeCCC-CCCC
Q 046626 425 ENLEYFSLETLMLKDCESLNLNLN-----------------------IEMEGEESHCDRNKTRLHLRKLFVEGLP-PLLE 480 (557)
Q Consensus 425 ~~l~~l~~~~~~l~~l~~l~l~~~-----------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~ 480 (557)
+.+..+|.....+.++..|+|+.| .....+... .+++.|+.|.+.+.. .+..
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av----cKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV----CKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH----hhhHHHHHHHhccCcccccC
Confidence 444445544444444444444444 332222222 344444444443321 1234
Q ss_pred CChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 481 LPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 481 lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
+|..| +.+.+|+.+...+|. +...|+.++.++.|+.|.|+.+.-+ ..+..|.-++-|++||+..|
T Consensus 308 iPSGI--GKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLi---------TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 308 IPSGI--GKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLI---------TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred Cccch--hhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccccee---------echhhhhhcCCcceeeccCC
Confidence 55555 555566666655554 4555666666666666655543211 13345555666666666654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=7.5e-17 Score=157.60 Aligned_cols=225 Identities=21% Similarity=0.191 Sum_probs=119.2
Q ss_pred hhcCCCcceEeeCCCChhhhccc-cCCCCccCeeeccCCcCccccc-hhhhcCCcCcEeecCCcCCCccccc-cccCCCC
Q 046626 316 ISKSQFLRVIDLSETAIEVLSRE-IGNLKHLRYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCRELEELPK-DIRYLVS 392 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~ 392 (557)
++-++.|++|||+.|.+..+|.. +..=.++++|+|++|. +..+. ..|..+.+|.+|.|+.|+ +..+|. .+.+|++
T Consensus 145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPK 222 (873)
T ss_pred HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcch
Confidence 44445555666666555555432 3333456666666553 33332 335555566666666555 333333 3444666
Q ss_pred CcEEEccccccccc-ccCcCCCCCCCeecccccccccccc-cceEecccCCCccccCccccccccccccccCCCCCcceE
Q 046626 393 LRMFMVSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYFS-LETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKL 470 (557)
Q Consensus 393 L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L 470 (557)
|+.|++..|.+..+ -..|..|.+|+.|.|.. +.+..+. ..+..+.++++|+|+.|.......+ ....+..|+.|
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g---~lfgLt~L~~L 298 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG---WLFGLTSLEQL 298 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchhhhhhcc---cccccchhhhh
Confidence 66666666655533 23455556666665554 2333332 2345556666666665543222221 12445566666
Q ss_pred EEeCCCCCCCC-ChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCce
Q 046626 471 FVEGLPPLLEL-PQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQV 549 (557)
Q Consensus 471 ~l~~~~~l~~l-p~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l 549 (557)
+++.. .+..+ +... ...++|+.|+|++|.+..--+.+|..+..|++|+|+. |.........|..+.+|
T Consensus 299 ~lS~N-aI~rih~d~W--sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~--------Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 299 DLSYN-AIQRIHIDSW--SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH--------NSIDHLAEGAFVGLSSL 367 (873)
T ss_pred ccchh-hhheeecchh--hhcccceeEeccccccccCChhHHHHHHHhhhhcccc--------cchHHHHhhHHHHhhhh
Confidence 66552 22221 2222 4556677777777765544455566667777777766 34444444556677777
Q ss_pred eeCCCCCC
Q 046626 550 RIDDESDN 557 (557)
Q Consensus 550 ~~l~~~~n 557 (557)
+.||+++|
T Consensus 368 ~~LdLr~N 375 (873)
T KOG4194|consen 368 HKLDLRSN 375 (873)
T ss_pred hhhcCcCC
Confidence 77777776
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=4.2e-16 Score=152.49 Aligned_cols=243 Identities=20% Similarity=0.207 Sum_probs=138.2
Q ss_pred CcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCcccc-chhhhcCCcCcEee
Q 046626 295 ARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKL-PNSICELHSLQTLS 373 (557)
Q Consensus 295 l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~ 373 (557)
-++|+++.|... .+....|.++++|+.+++..|.++.+|...+...+|+.|+|.+|. +.++ ...+..++.|++||
T Consensus 80 t~~LdlsnNkl~---~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 80 TQTLDLSNNKLS---HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeeeeccccccc---cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhh
Confidence 344555544332 233344556666666666666666666655555566666666653 4333 23455566666666
Q ss_pred cCCcCCCccccc-cccCCCCCcEEEccccccccc-ccCcCCCCCCCeecccccccccccccceEe-cccCCCccccCccc
Q 046626 374 LGGCRELEELPK-DIRYLVSLRMFMVSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYFSLETLM-LKDCESLNLNLNIE 450 (557)
Q Consensus 374 l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~-l~~l~~l~l~~~~~ 450 (557)
|+.|. +.++|. ++..-.++++|++++|.++.+ ...|..+.+|-+|.|+. +.+..+|....+ |..++.|+|..|..
T Consensus 156 LSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccce
Confidence 66644 334443 333445566666666666643 23455556666666664 445555544333 55555555544432
Q ss_pred ------------------------cccccccccccCCCCCcceEEEeCCCCCCCC-ChhhccCCCcccceEecccccccc
Q 046626 451 ------------------------MEGEESHCDRNKTRLHLRKLFVEGLPPLLEL-PQWLLQGSTKTLKNLIIRNCPNFM 505 (557)
Q Consensus 451 ------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~~~~~~l~~L~~L~L~~c~~~~ 505 (557)
.....+.+ -.+.++++|++.. +.+..+ ..|+ -.++.|+.|+|++|.+..
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~F---y~l~kme~l~L~~-N~l~~vn~g~l--fgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF---YGLEKMEHLNLET-NRLQAVNEGWL--FGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcce---eeecccceeeccc-chhhhhhcccc--cccchhhhhccchhhhhe
Confidence 11111111 1223334444433 122222 2345 467788888888888777
Q ss_pred cCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 506 ALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 506 ~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
..++.....++|++|+|++ |.+...+...+..+..|+.|++++|
T Consensus 308 ih~d~WsftqkL~~LdLs~--------N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSS--------NRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eecchhhhcccceeEeccc--------cccccCChhHHHHHHHhhhhccccc
Confidence 7777777778888888888 5677777778888888888888887
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.9e-18 Score=141.92 Aligned_cols=164 Identities=28% Similarity=0.442 Sum_probs=118.0
Q ss_pred cCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 318 KSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 318 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
.+.++..|.+++|.++.+|+.+..+.+|+.|++++|. ++++|.+++.++.|+.|+++.|+ +..+|.++|.++-|++|+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhh
Confidence 4566777778888888888888888888888888764 78888888888888888887755 667788888888888888
Q ss_pred ccccccc--ccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCC
Q 046626 398 VSTKQKS--LLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGL 475 (557)
Q Consensus 398 l~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 475 (557)
++.|++. .+|..|..|+.|+.|.+++ +..+.+|.....++++ +.|.+..
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~l---------------------------qil~lrd- 159 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNL---------------------------QILSLRD- 159 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcce---------------------------eEEeecc-
Confidence 8777765 6677777777777777776 4555555544444433 3333433
Q ss_pred CCCCCCChhhccCCCcccceEecccccccccCCccCCCCC
Q 046626 476 PPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLE 515 (557)
Q Consensus 476 ~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~ 515 (557)
+.+-++|..+ +.++.|++|.+.+|. ++.+|+.++++.
T Consensus 160 ndll~lpkei--g~lt~lrelhiqgnr-l~vlppel~~l~ 196 (264)
T KOG0617|consen 160 NDLLSLPKEI--GDLTRLRELHIQGNR-LTVLPPELANLD 196 (264)
T ss_pred CchhhCcHHH--HHHHHHHHHhcccce-eeecChhhhhhh
Confidence 2344778888 888899999998886 677887676643
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=1.2e-17 Score=156.28 Aligned_cols=126 Identities=26% Similarity=0.407 Sum_probs=85.0
Q ss_pred ceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccC-CCCccCe
Q 046626 269 RVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIG-NLKHLRY 347 (557)
Q Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~ 347 (557)
++.++....+.... +|+.+..++.|.-|.+..+... ++| .|.++..|++|++..|.+..+|...+ ++.+|.+
T Consensus 184 ~L~~ld~~~N~L~t--lP~~lg~l~~L~~LyL~~Nki~----~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 184 RLKHLDCNSNLLET--LPPELGGLESLELLYLRRNKIR----FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHhcccchhhhhc--CChhhcchhhhHHHHhhhcccc----cCC-CCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 44455554444433 4566666666666666655442 333 46667777777777777777777655 7777788
Q ss_pred eeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccc
Q 046626 348 LDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS 404 (557)
Q Consensus 348 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 404 (557)
|||++|+ +++.|+.+..+.+|++||+++|. +..+|.++|++ .|+.|-+.+|.+.
T Consensus 257 LDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 257 LDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred eeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchH
Confidence 8888774 77778777777778888887755 66777777777 7777777766543
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=3.3e-18 Score=159.86 Aligned_cols=223 Identities=28% Similarity=0.296 Sum_probs=110.5
Q ss_pred ccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCc
Q 046626 289 LSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHS 368 (557)
Q Consensus 289 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 368 (557)
..++..+.++.+..+.. ..+|..+.++..++.+++++|++..+|+.++++.+|+.|+.+.|. ..++|++++.+-.
T Consensus 64 l~nL~~l~vl~~~~n~l----~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKL----SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLD 138 (565)
T ss_pred hhcccceeEEEeccchh----hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-eeecCchHHHHhh
Confidence 33444444444443321 233444555555555555555555555555555555555555553 5555555555555
Q ss_pred CcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCc
Q 046626 369 LQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLN 448 (557)
Q Consensus 369 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~ 448 (557)
|+.|+..+|+ ...+|++++++.+|..+++.+|.+..+|+..-.|+.|+.|+.-. +.++.+|.....++.+.-|++..|
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc
Confidence 5555555443 44555555555555555555555554444444455555554433 344555555555554444444444
Q ss_pred cccccc----------------------cccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccccc
Q 046626 449 IEMEGE----------------------ESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMA 506 (557)
Q Consensus 449 ~~~~~~----------------------~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~ 506 (557)
.....+ ...+ ..+.+|..|++.+ +.++++|..+ --+.+|.+||+++|.+ ..
T Consensus 217 ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~---~~L~~l~vLDLRd-Nklke~Pde~--clLrsL~rLDlSNN~i-s~ 289 (565)
T KOG0472|consen 217 KIRFLPEFPGCSLLKELHVGENQIEMLPAEHL---KHLNSLLVLDLRD-NKLKEVPDEI--CLLRSLERLDLSNNDI-SS 289 (565)
T ss_pred ccccCCCCCccHHHHHHHhcccHHHhhHHHHh---cccccceeeeccc-cccccCchHH--HHhhhhhhhcccCCcc-cc
Confidence 321111 1111 2444555555554 3445555554 3455555555555542 34
Q ss_pred CCccCCCCCCcceeeecCCC
Q 046626 507 LPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 507 lp~~l~~l~~L~~L~l~~c~ 526 (557)
+|.+++++ .|+.|.+.|+|
T Consensus 290 Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CCcccccc-eeeehhhcCCc
Confidence 55555555 55555555554
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=3.2e-16 Score=129.96 Aligned_cols=154 Identities=27% Similarity=0.417 Sum_probs=130.6
Q ss_pred cCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCe
Q 046626 339 IGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRF 418 (557)
Q Consensus 339 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 418 (557)
+-++.+...|-|+.|+ +..+|+.|..+.+|++|++.+|+ +.++|.+++.+++|++|+++.|.+..+|.+||.++-|+.
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 3456778889999985 88999999999999999999876 889999999999999999999999999999999999999
Q ss_pred eccccccc-ccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEe
Q 046626 419 LMISDCEN-LEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLI 497 (557)
Q Consensus 419 L~l~~c~~-l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~ 497 (557)
|+++.++. -..+|-.+..++.+..|.++.| .++-+|..+ +.+++|+.|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dn----------------------------dfe~lp~dv--g~lt~lqil~ 156 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDN----------------------------DFEILPPDV--GKLTNLQILS 156 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCC----------------------------CcccCChhh--hhhcceeEEe
Confidence 99998653 3355666655555555544333 456788888 9999999999
Q ss_pred cccccccccCCccCCCCCCcceeeecCC
Q 046626 498 IRNCPNFMALPESLRNLEALETLAIGGC 525 (557)
Q Consensus 498 L~~c~~~~~lp~~l~~l~~L~~L~l~~c 525 (557)
+++|.. -.+|..++.++.|++|.+.|+
T Consensus 157 lrdndl-l~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 157 LRDNDL-LSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred eccCch-hhCcHHHHHHHHHHHHhcccc
Confidence 999984 579999999999999999995
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.2e-13 Score=147.19 Aligned_cols=246 Identities=18% Similarity=0.171 Sum_probs=167.2
Q ss_pred eEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeee
Q 046626 270 VCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLD 349 (557)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 349 (557)
...+.+....... ++..+ ...++.|.+..|.... +|..+ ..+|++|++++|.++.+|..+. .+|+.|+
T Consensus 180 ~~~L~L~~~~Lts--LP~~I--p~~L~~L~Ls~N~Lts----LP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 180 KTELRLKILGLTT--IPACI--PEQITTLILDNNELKS----LPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred ceEEEeCCCCcCc--CCccc--ccCCcEEEecCCCCCc----CChhh--ccCCCEEECCCCccccCChhhh--ccccEEE
Confidence 4556665554443 23222 2478888888766542 22222 2579999999999998887664 4799999
Q ss_pred ccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccc
Q 046626 350 LSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEY 429 (557)
Q Consensus 350 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 429 (557)
|++|. +..+|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|.+..+|..+. .+|+.|++++| .+..
T Consensus 248 Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~ 318 (754)
T PRK15370 248 LSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTA 318 (754)
T ss_pred CcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-cccc
Confidence 99985 778888764 589999999775 567887664 589999999999988876553 57889999874 5566
Q ss_pred cccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCc
Q 046626 430 FSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPE 509 (557)
Q Consensus 430 l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~ 509 (557)
+|.... .+++.|.++.|.....+. ...++|+.|+++++ .+..+|..+ .++|+.|+|++|. +..+|.
T Consensus 319 LP~~l~--~sL~~L~Ls~N~Lt~LP~------~l~~sL~~L~Ls~N-~L~~LP~~l----p~~L~~LdLs~N~-Lt~LP~ 384 (754)
T PRK15370 319 LPETLP--PGLKTLEAGENALTSLPA------SLPPELQVLDVSKN-QITVLPETL----PPTITTLDVSRNA-LTNLPE 384 (754)
T ss_pred CCcccc--ccceeccccCCccccCCh------hhcCcccEEECCCC-CCCcCChhh----cCCcCEEECCCCc-CCCCCH
Confidence 664432 567777777665322211 12368999999986 466788765 3689999999997 446777
Q ss_pred cCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 510 SLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 510 ~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
.+. ++|+.|++++|. |..++.. .+.....++++..+++.+|
T Consensus 385 ~l~--~sL~~LdLs~N~-L~~LP~s----l~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 385 NLP--AALQIMQASRNN-LVRLPES----LPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred hHH--HHHHHHhhccCC-cccCchh----HHHHhhcCCCccEEEeeCC
Confidence 553 479999999863 2222111 1112234577777777776
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=2.6e-13 Score=144.81 Aligned_cols=226 Identities=19% Similarity=0.223 Sum_probs=166.8
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCcc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHL 345 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L 345 (557)
++..+..+.+.++.+... +..+ ..+|++|.+..+.... +|..+ ..+|+.|++++|.+..+|..+. .+|
T Consensus 197 Ip~~L~~L~Ls~N~LtsL--P~~l--~~nL~~L~Ls~N~Lts----LP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L 264 (754)
T PRK15370 197 IPEQITTLILDNNELKSL--PENL--QGNIKTLYANSNQLTS----IPATL--PDTIQEMELSINRITELPERLP--SAL 264 (754)
T ss_pred cccCCcEEEecCCCCCcC--Chhh--ccCCCEEECCCCcccc----CChhh--hccccEEECcCCccCcCChhHh--CCC
Confidence 456788888888877653 3322 3589999998766542 22222 2469999999999999988765 489
Q ss_pred CeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccc
Q 046626 346 RYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 425 (557)
++|++++|. +..+|..+. .+|++|++++|. +..+|..+. ++|+.|++++|.+..+|..+. ++|++|++++|
T Consensus 265 ~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N- 335 (754)
T PRK15370 265 QSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGEN- 335 (754)
T ss_pred CEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCC-
Confidence 999999885 788998664 589999999986 667786553 579999999999988876543 78999999986
Q ss_pred cccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccc
Q 046626 426 NLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFM 505 (557)
Q Consensus 426 ~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~ 505 (557)
.+..+|..+. .+++.|+++.|.....+. ...++|++|+|+++ .+..+|..+ . .+|+.|++++|.. .
T Consensus 336 ~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~------~lp~~L~~LdLs~N-~Lt~LP~~l--~--~sL~~LdLs~N~L-~ 401 (754)
T PRK15370 336 ALTSLPASLP--PELQVLDVSKNQITVLPE------TLPPTITTLDVSRN-ALTNLPENL--P--AALQIMQASRNNL-V 401 (754)
T ss_pred ccccCChhhc--CcccEEECCCCCCCcCCh------hhcCCcCEEECCCC-cCCCCCHhH--H--HHHHHHhhccCCc-c
Confidence 4666775442 578888888775332211 12368999999996 567888876 2 4799999999975 4
Q ss_pred cCCccC----CCCCCcceeeecCCC
Q 046626 506 ALPESL----RNLEALETLAIGGCP 526 (557)
Q Consensus 506 ~lp~~l----~~l~~L~~L~l~~c~ 526 (557)
.+|..+ ..++++..|++.+|+
T Consensus 402 ~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 402 RLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCchhHHHHhhcCCCccEEEeeCCC
Confidence 666644 445889999999965
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=2.4e-12 Score=136.59 Aligned_cols=174 Identities=25% Similarity=0.205 Sum_probs=99.7
Q ss_pred CcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccc
Q 046626 321 FLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVST 400 (557)
Q Consensus 321 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 400 (557)
.|+.|++++|.++.+|.. +++|++|++++|. +..+|.. ..+|+.|++++|. +..+|. ...+|+.|++++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~---lp~~Lq~LdLS~ 351 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPT---LPSGLQELSVSD 351 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCc-cccccc---cccccceEecCC
Confidence 344555555555554432 2445555665553 4444431 1245555555544 334442 123567777777
Q ss_pred ccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCC
Q 046626 401 KQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLE 480 (557)
Q Consensus 401 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 480 (557)
|.+..+|.. ..+|+.|++++ +.+..+|.. ..+++.|+++.|.....+ ....+|+.|+++++ .+..
T Consensus 352 N~Ls~LP~l---p~~L~~L~Ls~-N~L~~LP~l---~~~L~~LdLs~N~Lt~LP-------~l~s~L~~LdLS~N-~Lss 416 (788)
T PRK15387 352 NQLASLPTL---PSELYKLWAYN-NRLTSLPAL---PSGLKELIVSGNRLTSLP-------VLPSELKELMVSGN-RLTS 416 (788)
T ss_pred CccCCCCCC---Ccccceehhhc-cccccCccc---ccccceEEecCCcccCCC-------CcccCCCEEEccCC-cCCC
Confidence 776666543 24555666665 345555532 245666666666432111 12356788888875 4566
Q ss_pred CChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 481 LPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 481 lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
+|.. +.+|+.|++++|. ++.+|..++++++|+.|++++|+
T Consensus 417 IP~l-----~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 417 LPML-----PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCcc-----hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 7643 3467788888887 45788888888888888888854
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=1.7e-12 Score=137.69 Aligned_cols=234 Identities=20% Similarity=0.123 Sum_probs=167.7
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCe
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRY 347 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 347 (557)
..+..+.+..+.+... + ...++|++|.+..|..... |. ..++|+.|++++|.+..+|..+ .+|+.
T Consensus 222 ~~L~~L~L~~N~Lt~L--P---~lp~~Lk~LdLs~N~LtsL----P~---lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~ 286 (788)
T PRK15387 222 AHITTLVIPDNNLTSL--P---ALPPELRTLEVSGNQLTSL----PV---LPPGLLELSIFSNPLTHLPALP---SGLCK 286 (788)
T ss_pred cCCCEEEccCCcCCCC--C---CCCCCCcEEEecCCccCcc----cC---cccccceeeccCCchhhhhhch---hhcCE
Confidence 4567777777766543 2 2467899999987765422 22 2367899999999999888643 56889
Q ss_pred eeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccc
Q 046626 348 LDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENL 427 (557)
Q Consensus 348 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 427 (557)
|++++|. +..+|.. +++|+.|++++|. +..+|.. ..+|+.|++++|.+..+|. ...+|+.|++++ +.+
T Consensus 287 L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~-N~L 354 (788)
T PRK15387 287 LWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLPT---LPSGLQELSVSD-NQL 354 (788)
T ss_pred EECcCCc-ccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCccccccc---cccccceEecCC-Ccc
Confidence 9999985 8888863 5789999999986 5567753 3467888999999988774 236899999997 567
Q ss_pred cccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccC
Q 046626 428 EYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMAL 507 (557)
Q Consensus 428 ~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~l 507 (557)
..+|.. ..++..|.++.|.....+ ....+|+.|+++++ .+..+|.. +++|+.|++++|.. ..+
T Consensus 355 s~LP~l---p~~L~~L~Ls~N~L~~LP-------~l~~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~N~L-ssI 417 (788)
T PRK15387 355 ASLPTL---PSELYKLWAYNNRLTSLP-------ALPSGLKELIVSGN-RLTSLPVL-----PSELKELMVSGNRL-TSL 417 (788)
T ss_pred CCCCCC---CcccceehhhccccccCc-------ccccccceEEecCC-cccCCCCc-----ccCCCEEEccCCcC-CCC
Confidence 777753 345666666665432211 12357999999885 56677753 36899999999984 567
Q ss_pred CccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 508 PESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 508 p~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
|.. ..+|+.|++++| .+. ..+..+..+++|+.+++++|
T Consensus 418 P~l---~~~L~~L~Ls~N--------qLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 418 PML---PSGLLSLSVYRN--------QLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred Ccc---hhhhhhhhhccC--------ccc-ccChHHhhccCCCeEECCCC
Confidence 863 357888999984 333 23456778899999999987
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=8.2e-14 Score=143.78 Aligned_cols=219 Identities=22% Similarity=0.238 Sum_probs=120.6
Q ss_pred CCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEe
Q 046626 293 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTL 372 (557)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 372 (557)
.++.++.+..+.. ..+|+++..+.+|+.++..+|.+..+|..+....+|++|+...|. ++.+|...+.+.+|++|
T Consensus 241 ~nl~~~dis~n~l----~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNL----SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhh----hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeee
Confidence 3444455443322 233455666666666666666666666666666666666666553 55666555556666666
Q ss_pred ecCCcCCCccccccc--------------------------cCCCCCcEEEccccccc-ccccCcCCCCCCCeecccccc
Q 046626 373 SLGGCRELEELPKDI--------------------------RYLVSLRMFMVSTKQKS-LLESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 373 ~l~~~~~~~~~p~~~--------------------------~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~ 425 (557)
+|..|. +..+|+.+ ..++.|+.|++.+|.++ ..-..+.+.++|+.|+|++ +
T Consensus 316 dL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-N 393 (1081)
T KOG0618|consen 316 DLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-N 393 (1081)
T ss_pred eehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-c
Confidence 665543 33444321 12445556666666665 2223456667777777776 5
Q ss_pred cccccccc-eEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccc
Q 046626 426 NLEYFSLE-TLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNF 504 (557)
Q Consensus 426 ~l~~l~~~-~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~ 504 (557)
.+..+|.. +.+++.++.|.+++|.....+..+ ..+..|+.|...+ +.+..+|+ + ..++.|+.+|++.|...
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv----a~~~~L~tL~ahs-N~l~~fPe-~--~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLTTLPDTV----ANLGRLHTLRAHS-NQLLSFPE-L--AQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhhhhhHHH----HhhhhhHHHhhcC-Cceeechh-h--hhcCcceEEecccchhh
Confidence 66666644 445666666666666543333222 3444555555444 34445663 3 46677777777766643
Q ss_pred c-cCCccCCCCCCcceeeecCCCc
Q 046626 505 M-ALPESLRNLEALETLAIGGCPA 527 (557)
Q Consensus 505 ~-~lp~~l~~l~~L~~L~l~~c~~ 527 (557)
. .+|... .-|+|++|+++|++.
T Consensus 466 ~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 466 EVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhC-CCcccceeeccCCcc
Confidence 3 233322 126777777777653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=2.2e-13 Score=134.48 Aligned_cols=249 Identities=20% Similarity=0.112 Sum_probs=143.4
Q ss_pred cCCCCcccccccccCCCCCcEEEecCCCccc-hhHHHHHHhhcCCCcceEeeCCCChh-------hhccccCCCCccCee
Q 046626 277 GANTSRNDFSSLLSDLRRARTILFPINDEKT-NQSILTSCISKSQFLRVIDLSETAIE-------VLSREIGNLKHLRYL 348 (557)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-------~l~~~~~~l~~L~~L 348 (557)
...+........+..+..++.+.+..+.... ....++..+...+.++.|+++++.+. .++..+..+++|++|
T Consensus 7 ~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 86 (319)
T cd00116 7 GELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQEL 86 (319)
T ss_pred cCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEE
Confidence 3334333344555666667777777555432 12334555666677777777776554 233456667778888
Q ss_pred eccCCcCccccchhhhcCCc---CcEeecCCcCCCc----cccccccCC-CCCcEEEccccccc-----ccccCcCCCCC
Q 046626 349 DLSDNDKIKKLPNSICELHS---LQTLSLGGCRELE----ELPKDIRYL-VSLRMFMVSTKQKS-----LLESGIGCLSS 415 (557)
Q Consensus 349 ~l~~~~~~~~lp~~~~~l~~---L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~l~~~~~~-----~~~~~~~~l~~ 415 (557)
++++|......+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++++|.++ .++..+..+++
T Consensus 87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 88877644445555555555 8888887776441 233344555 77788888877765 23344566677
Q ss_pred CCeeccccccccc----ccccceEecccCCCccccCccccccc-cccccccCCCCCcceEEEeCCCCCC----CCChhhc
Q 046626 416 LRFLMISDCENLE----YFSLETLMLKDCESLNLNLNIEMEGE-ESHCDRNKTRLHLRKLFVEGLPPLL----ELPQWLL 486 (557)
Q Consensus 416 L~~L~l~~c~~l~----~l~~~~~~l~~l~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~----~lp~~~~ 486 (557)
|++|++++|..-. .++.......+++.|+++.+...... .........+++|++|++++++--. .+...+.
T Consensus 167 L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 167 LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 8888887754321 12222222345666666555321111 1111223456788999998864221 1111111
Q ss_pred cCCCcccceEeccccccc----ccCCccCCCCCCcceeeecCCC
Q 046626 487 QGSTKTLKNLIIRNCPNF----MALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 487 ~~~l~~L~~L~L~~c~~~----~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
...+.|++|++++|.+. ..++..+..+++|+++++++|.
T Consensus 247 -~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 247 -SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred -ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 12478999999998764 2334455667889999998853
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.31 E-value=8.7e-14 Score=130.42 Aligned_cols=237 Identities=20% Similarity=0.175 Sum_probs=153.6
Q ss_pred HHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccccc
Q 046626 310 SILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPKDI 387 (557)
Q Consensus 310 ~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~ 387 (557)
.+++..|+.++.||.|||++|+|+.+ |..|..++.|-.|-+.++..|..+|+ .|+.|..|+.|.+.-|+......+.+
T Consensus 81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 56788899999999999999999966 77899999988888888667999996 47899999999999888766777788
Q ss_pred cCCCCCcEEEccccccccccc-CcCCCCCCCeecccccc-----cccc-------cccceEecccCCCccccCcc-----
Q 046626 388 RYLVSLRMFMVSTKQKSLLES-GIGCLSSLRFLMISDCE-----NLEY-------FSLETLMLKDCESLNLNLNI----- 449 (557)
Q Consensus 388 ~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~c~-----~l~~-------l~~~~~~l~~l~~l~l~~~~----- 449 (557)
..+++|..|.+..|.+..++. .+..+..++++.+..++ ++.+ .|.+.....-.....+....
T Consensus 161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence 999999999999999887765 78888999998877544 1111 12222111111000000000
Q ss_pred ----------------cccccccc--ccccCCCCCcceEEEeCCCCCCCCC-hhhccCCCcccceEecccccccccCCcc
Q 046626 450 ----------------EMEGEESH--CDRNKTRLHLRKLFVEGLPPLLELP-QWLLQGSTKTLKNLIIRNCPNFMALPES 510 (557)
Q Consensus 450 ----------------~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~lp-~~~~~~~l~~L~~L~L~~c~~~~~lp~~ 510 (557)
........ ...+..+++|+.+++++. .++.+. .|| ..+..++.|.|..|++...-...
T Consensus 241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aF--e~~a~l~eL~L~~N~l~~v~~~~ 317 (498)
T KOG4237|consen 241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIEDGAF--EGAAELQELYLTRNKLEFVSSGM 317 (498)
T ss_pred hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhhhhhh--cchhhhhhhhcCcchHHHHHHHh
Confidence 00000000 011356677777777763 344443 344 45566666666666644333444
Q ss_pred CCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 511 LRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 511 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
|.++..|+.|+|.+ |.++-..|..|.++-+|..+++-+|
T Consensus 318 f~~ls~L~tL~L~~--------N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYD--------NQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhccccceeeeecC--------CeeEEEecccccccceeeeeehccC
Confidence 66666666666666 4555555556666666666665544
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.30 E-value=1.2e-13 Score=142.49 Aligned_cols=267 Identities=21% Similarity=0.181 Sum_probs=150.0
Q ss_pred eEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeee
Q 046626 270 VCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLD 349 (557)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~ 349 (557)
+.++++.++.... ++..+..+.+|+.+.++.+.. ...|.....+++|++|.|.+|.+..+|.++..+.+|++|+
T Consensus 47 L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i----~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 47 LKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYI----RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred eEEeecccccccc--CCchhhhHHHHhhcccchhhH----hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccc
Confidence 5666666665544 556667777888887765443 3445667788889999999988888898888888999999
Q ss_pred ccCCcCccccchhhhcCCcCcEeecCCc-------------------CCCccccccccC---------------------
Q 046626 350 LSDNDKIKKLPNSICELHSLQTLSLGGC-------------------RELEELPKDIRY--------------------- 389 (557)
Q Consensus 350 l~~~~~~~~lp~~~~~l~~L~~L~l~~~-------------------~~~~~~p~~~~~--------------------- 389 (557)
+++|. ...+|.-+..+..++.++.++| .....++.++.+
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhcc
Confidence 98884 5555543333322222222222 111112222211
Q ss_pred ----------------------------------------CCCCcEEEcccccccccccCcCCCCCCCeecccccccccc
Q 046626 390 ----------------------------------------LVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEY 429 (557)
Q Consensus 390 ----------------------------------------l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 429 (557)
..+|+.++++.+.+..+|..++.+.+|+.++... +.+..
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~-N~l~~ 278 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANH-NRLVA 278 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccc-hhHHh
Confidence 2233334444444444444444445555554443 33344
Q ss_pred cccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhc-----------------------
Q 046626 430 FSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLL----------------------- 486 (557)
Q Consensus 430 l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~----------------------- 486 (557)
+|+++..+++|..+....|.....+ .....+.+|++|++.. ..+..+|..++
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip----~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIP----PFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCC----Ccccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 5555555555555544333221111 1113456677777665 23334443221
Q ss_pred -cCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 487 -QGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 487 -~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
+..++.|+.|++.+|......-+.+.++++|+.|+|++ |.+...+-..+..++.|+.|++|+|
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy--------NrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY--------NRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc--------cccccCCHHHHhchHHhHHHhcccc
Confidence 12455677777777765544333467777788888877 4444445556777777777777776
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=6.7e-12 Score=123.90 Aligned_cols=236 Identities=21% Similarity=0.194 Sum_probs=129.0
Q ss_pred cccCCCCCcEEEecCCCcc---chhHHHHHHhhcCCCcceEeeCCCChh-hhccccCCC---CccCeeeccCCcCc----
Q 046626 288 LLSDLRRARTILFPINDEK---TNQSILTSCISKSQFLRVIDLSETAIE-VLSREIGNL---KHLRYLDLSDNDKI---- 356 (557)
Q Consensus 288 ~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l---~~L~~L~l~~~~~~---- 356 (557)
.+...+.++.+.+..+... ......+..+..+++|+.|+++++.+. ..+..+..+ ++|++|++++|...
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 3444555666665544332 122334455666667777777776665 233333333 33777777766422
Q ss_pred cccchhhhcC-CcCcEeecCCcCCCc----cccccccCCCCCcEEEccccccc-----ccccCcCCCCCCCeeccccccc
Q 046626 357 KKLPNSICEL-HSLQTLSLGGCRELE----ELPKDIRYLVSLRMFMVSTKQKS-----LLESGIGCLSSLRFLMISDCEN 426 (557)
Q Consensus 357 ~~lp~~~~~l-~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~~c~~ 426 (557)
..+...+..+ ++|+.|++++|.... .++..+..+++|++|++++|.+. .++..+..+++|+.|++++|..
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 1223344555 677777777766442 23344555666777777776655 2233344556777777776532
Q ss_pred c----cccccceEecccCCCccccCcccccccc-ccccc-cCCCCCcceEEEeCCCCC----CCCChhhccCCCcccceE
Q 046626 427 L----EYFSLETLMLKDCESLNLNLNIEMEGEE-SHCDR-NKTRLHLRKLFVEGLPPL----LELPQWLLQGSTKTLKNL 496 (557)
Q Consensus 427 l----~~l~~~~~~l~~l~~l~l~~~~~~~~~~-~~~~~-~~~~~~L~~L~l~~~~~l----~~lp~~~~~~~l~~L~~L 496 (557)
- ..+........+++.|+++.+....... .+... ......|++|++.+|.-. ..++..+ ..+++|+.+
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~--~~~~~L~~l 283 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVL--AEKESLLEL 283 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHH--hcCCCccEE
Confidence 1 1122223344556666666553211000 00000 013478999999987432 1233444 566899999
Q ss_pred eccccccccc----CCccCCCC-CCcceeeecCC
Q 046626 497 IIRNCPNFMA----LPESLRNL-EALETLAIGGC 525 (557)
Q Consensus 497 ~L~~c~~~~~----lp~~l~~l-~~L~~L~l~~c 525 (557)
++++|..... +...+... +.|++|++..+
T Consensus 284 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 284 DLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred ECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 9999987643 44444445 78888888774
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=3.5e-12 Score=125.15 Aligned_cols=179 Identities=28% Similarity=0.406 Sum_probs=123.4
Q ss_pred HHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCC
Q 046626 311 ILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYL 390 (557)
Q Consensus 311 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l 390 (557)
.+|..++.+..|..+.+..|.+..+|..++++..|.||+|+.|. +..+|..++.|+ |+.|.+++|+ +..+|..++.+
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~ 165 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLL 165 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccc
Confidence 34555556666777777777777777777777777777777764 777777665543 6777777654 66777777777
Q ss_pred CCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceE
Q 046626 391 VSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKL 470 (557)
Q Consensus 391 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L 470 (557)
..|.+|+.+.|.+..+|..++.+.+|+.|++.. +.+..+|.+.. ...|..|
T Consensus 166 ~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~----------------------------~LpLi~l 216 (722)
T KOG0532|consen 166 PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELC----------------------------SLPLIRL 216 (722)
T ss_pred hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHh----------------------------CCceeee
Confidence 777777777777777777777777777777766 34444543322 2344555
Q ss_pred EEeCCCCCCCCChhhccCCCcccceEecccccccccCCccC---CCCCCcceeeecCC
Q 046626 471 FVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESL---RNLEALETLAIGGC 525 (557)
Q Consensus 471 ~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l---~~l~~L~~L~l~~c 525 (557)
+++ |+++..||-.| ..|..|++|-|.+|+ ++.-|..+ |...-.++|++.-|
T Consensus 217 DfS-cNkis~iPv~f--r~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFS-CNKISYLPVDF--RKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecc-cCceeecchhh--hhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 554 46777888888 889999999999888 55555543 34456678888887
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.98 E-value=5e-11 Score=112.18 Aligned_cols=251 Identities=18% Similarity=0.163 Sum_probs=164.3
Q ss_pred CCCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCC-CChhhhccc-cCCC
Q 046626 265 SIPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSE-TAIEVLSRE-IGNL 342 (557)
Q Consensus 265 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~l~~~-~~~l 342 (557)
+.|.....+.+..+.+... .+..+..+++||.++++.|.+. .+-|..|++++.|..|-+-+ |.|+.+|+. |+.|
T Consensus 64 ~LP~~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is---~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNIS---FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred cCCCcceEEEeccCCcccC-Chhhccchhhhceecccccchh---hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 4567777888888777765 5577888999999999876654 56678888888877666655 888888875 7778
Q ss_pred CccCeeeccCCcCcccc-chhhhcCCcCcEeecCCcCCCccccc-cccCCCCCcEEEccccccc-------------ccc
Q 046626 343 KHLRYLDLSDNDKIKKL-PNSICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVSTKQKS-------------LLE 407 (557)
Q Consensus 343 ~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~-------------~~~ 407 (557)
..|+.|.+--|. +..+ ...+..|++|..|.+..|. ...++. .+..+..++.+++..|..- ..|
T Consensus 140 ~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 140 SSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred HHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 888888877764 4444 4557778888888777755 455555 6677777777776655421 111
Q ss_pred cCcCCCCCCCeeccc-------------------------cccccccccc-ceEecccCCCccccCcccccccccccccc
Q 046626 408 SGIGCLSSLRFLMIS-------------------------DCENLEYFSL-ETLMLKDCESLNLNLNIEMEGEESHCDRN 461 (557)
Q Consensus 408 ~~~~~l~~L~~L~l~-------------------------~c~~l~~l~~-~~~~l~~l~~l~l~~~~~~~~~~~~~~~~ 461 (557)
.+++...-..-..++ .|......|. .+..|.++++++++.|........ .+
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~---aF 294 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG---AF 294 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh---hh
Confidence 111111111111111 1111111121 245566777777776653322222 12
Q ss_pred CCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 462 KTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 462 ~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
.....+++|.+.. +.+..+...++ ..+..|+.|+|.+|+++...|..|..+.+|.+|++-.+|
T Consensus 295 e~~a~l~eL~L~~-N~l~~v~~~~f-~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 295 EGAAELQELYLTR-NKLEFVSSGMF-QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cchhhhhhhhcCc-chHHHHHHHhh-hccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 4556777777766 35555555555 678999999999999998899999999999999999876
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=1.2e-11 Score=121.49 Aligned_cols=180 Identities=22% Similarity=0.316 Sum_probs=136.1
Q ss_pred cccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhc
Q 046626 286 SSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICE 365 (557)
Q Consensus 286 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 365 (557)
+..+..+..|..+.+..+.. ...|..++++..|.+||++.|++..+|..++.|+ |+.|-+++| +++.+|..++.
T Consensus 91 p~~~~~f~~Le~liLy~n~~----r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~ 164 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCI----RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGL 164 (722)
T ss_pred chHHHHHHHHHHHHHHhccc----eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCccccc
Confidence 34444555555555554332 3456678888889999999999999998888876 888888877 48899988998
Q ss_pred CCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccc
Q 046626 366 LHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNL 445 (557)
Q Consensus 366 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l 445 (557)
+..|..||.+.|. +..+|..++.+.+|+.|.+..|++..+|..++.|+ |..||++ |+++..+|..+.+++.|++|.|
T Consensus 165 ~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfS-cNkis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 165 LPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFS-CNKISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred chhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecc-cCceeecchhhhhhhhheeeee
Confidence 8889999998876 77888889999999999999998888888888654 8888888 6888889999999999998888
Q ss_pred cCccccccccccccccCCCCCcceEEEeCC
Q 046626 446 NLNIEMEGEESHCDRNKTRLHLRKLFVEGL 475 (557)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 475 (557)
..|+..+++..+|.. .+.--.++|++..|
T Consensus 242 enNPLqSPPAqIC~k-GkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 242 ENNPLQSPPAQICEK-GKVHIFKYLSTQAC 270 (722)
T ss_pred ccCCCCCChHHHHhc-cceeeeeeecchhc
Confidence 888766665555432 22223344554444
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=3.3e-10 Score=123.13 Aligned_cols=203 Identities=27% Similarity=0.291 Sum_probs=124.8
Q ss_pred CCCcceEeeCCCC--hhhhccc-cCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcE
Q 046626 319 SQFLRVIDLSETA--IEVLSRE-IGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRM 395 (557)
Q Consensus 319 ~~~L~~L~l~~~~--~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 395 (557)
.+.|+.|-+..+. +..++.. |..++.|++|||++|..+..+|.+|+.|-+|++|+++++. +..+|.+++++++|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhhe
Confidence 3468888888875 5555544 7779999999999988889999999999999999999855 7799999999999999
Q ss_pred EEccccccc-ccccCcCCCCCCCeecccccccccccccceEecccCCCcc---ccCccccccccccccccCCCCCcc---
Q 046626 396 FMVSTKQKS-LLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLN---LNLNIEMEGEESHCDRNKTRLHLR--- 468 (557)
Q Consensus 396 L~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~---l~~~~~~~~~~~~~~~~~~~~~L~--- 468 (557)
|++..+... .+|.....|.+|++|.+..-. ...-......+.+++.|. ...... ...........|.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~-----~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSV-----LLLEDLLGMTRLRSLL 696 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchh-----HhHhhhhhhHHHHHHh
Confidence 999876544 444555558999999887522 111111111222333332 211110 0000111222222
Q ss_pred -eEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCcc-----CCC-CCCcceeeecCCCccccc
Q 046626 469 -KLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPES-----LRN-LEALETLAIGGCPALSER 531 (557)
Q Consensus 469 -~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~-----l~~-l~~L~~L~l~~c~~l~~~ 531 (557)
.+.+.+ ......+..+ ..+.+|+.|.+.+|........+ ... ++++..+.+.+|+++...
T Consensus 697 ~~l~~~~-~~~~~~~~~~--~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 697 QSLSIEG-CSKRTLISSL--GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred Hhhhhcc-cccceeeccc--ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 233323 2333444455 67888888988888876433222 112 556777777777655543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.5e-09 Score=110.41 Aligned_cols=128 Identities=32% Similarity=0.367 Sum_probs=102.5
Q ss_pred hhcCCCcceEeeCCCChhhhccccCCCC-ccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCc
Q 046626 316 ISKSQFLRVIDLSETAIEVLSREIGNLK-HLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLR 394 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 394 (557)
+...+.+..|++.++.+..+++....+. +|+.|++++|. +..+|..++.+++|+.|++++|+ +..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 4445789999999999999999888885 99999999985 88988779999999999999987 778888888999999
Q ss_pred EEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCcccc
Q 046626 395 MFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLN 446 (557)
Q Consensus 395 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~ 446 (557)
.|++++|.+..+|..++.+..|++|.++++. ....+.....+.++..+.+.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELS 240 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccC
Confidence 9999999999998877788889999998754 33333344444444444433
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=6e-09 Score=105.97 Aligned_cols=193 Identities=26% Similarity=0.318 Sum_probs=149.3
Q ss_pred eEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCC-cCcEeecCCcCCCccccccccCCCCCcEEEccccc
Q 046626 324 VIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELH-SLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQ 402 (557)
Q Consensus 324 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 402 (557)
.+++..+.+..-+..+..++.+..|++.++. +..+|.....+. +|+.|++++|. +..+|..++.+++|+.|+++.|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 5777777775555666777889999999885 899998888885 99999999976 77888899999999999999999
Q ss_pred ccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCC
Q 046626 403 KSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELP 482 (557)
Q Consensus 403 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp 482 (557)
+..+|...+.+++|+.|++++ +.+..+|.......+++.+.++.|...... .....+.++..+.+.+ ..+..+|
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~----~~~~~~~~l~~l~l~~-n~~~~~~ 248 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELL----SSLSNLKNLSGLELSN-NKLEDLP 248 (394)
T ss_pred hhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecc----hhhhhcccccccccCC-ceeeecc
Confidence 999998887999999999998 678888876666677888887777422111 1124455566665444 2333446
Q ss_pred hhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCcc
Q 046626 483 QWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPAL 528 (557)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l 528 (557)
..+ +.+++++.|++++|.+. .++. ++.+.+|+.|+++++...
T Consensus 249 ~~~--~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESI--GNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chh--ccccccceecccccccc-cccc-ccccCccCEEeccCcccc
Confidence 666 78889999999999854 4554 889999999999996433
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=1.2e-09 Score=99.42 Aligned_cols=128 Identities=23% Similarity=0.269 Sum_probs=83.0
Q ss_pred cCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCcc
Q 046626 365 ELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLN 444 (557)
Q Consensus 365 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~ 444 (557)
..+.|++||+++|. +..+.+++.-+++++.|+++.|.+..+- .+..|.+|+.|++++ +.+.++.-+...+.+.+.|.
T Consensus 282 TWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeeccc-chhHhhhhhHhhhcCEeeee
Confidence 34678889998865 6777788888888999999998888763 478888899999887 45555544445555555555
Q ss_pred ccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccccc-CCccCCCCCCcceeeec
Q 046626 445 LNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMA-LPESLRNLEALETLAIG 523 (557)
Q Consensus 445 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~-lp~~l~~l~~L~~L~l~ 523 (557)
++.|. ++++. .+ +.+-+|..|++++|++-.. --..+|++|.|+.+.+.
T Consensus 359 La~N~----------------------------iE~LS-GL--~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 359 LAQNK----------------------------IETLS-GL--RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhhh----------------------------Hhhhh-hh--HhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 54442 11111 11 3455666777777664321 12236677777777777
Q ss_pred CCC
Q 046626 524 GCP 526 (557)
Q Consensus 524 ~c~ 526 (557)
++|
T Consensus 408 ~NP 410 (490)
T KOG1259|consen 408 GNP 410 (490)
T ss_pred CCC
Confidence 765
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.6e-09 Score=100.51 Aligned_cols=156 Identities=17% Similarity=0.113 Sum_probs=99.5
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc--cCCCCcc
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE--IGNLKHL 345 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~l~~L 345 (557)
+.++.+.+.++.+...........+.+++.|+++.+-.. .....-.+...+++|+.|+++.|.+.....+ -..+.+|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 455666666666655433345667888888888754432 3344556677888888888888887744433 2356778
Q ss_pred CeeeccCCcCcc-ccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccc--cCcCCCCCCCeeccc
Q 046626 346 RYLDLSDNDKIK-KLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLE--SGIGCLSSLRFLMIS 422 (557)
Q Consensus 346 ~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~ 422 (557)
+.|.|+.|.... .+-..+..+++|+.|++..|.....--.+...++.|+.|++++|++-..+ ...+.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 888888885321 23333456788888888887533332233345667778888877766554 446677777777776
Q ss_pred cc
Q 046626 423 DC 424 (557)
Q Consensus 423 ~c 424 (557)
.|
T Consensus 280 ~t 281 (505)
T KOG3207|consen 280 ST 281 (505)
T ss_pred cc
Confidence 53
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.69 E-value=1.1e-08 Score=89.19 Aligned_cols=102 Identities=29% Similarity=0.452 Sum_probs=30.6
Q ss_pred CCcceEeeCCCChhhhccccC-CCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccc-cCCCCCcEEE
Q 046626 320 QFLRVIDLSETAIEVLSREIG-NLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDI-RYLVSLRMFM 397 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~ 397 (557)
..+++|+|+++.++.+. .++ .+.+|+.|++++|. +..++. +..+++|++|++++|. +..+++.+ ..+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCEEE
Confidence 34677777777776553 344 46677777777764 666653 6667777777777765 44444333 3467777777
Q ss_pred cccccccccc--cCcCCCCCCCeecccccc
Q 046626 398 VSTKQKSLLE--SGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 398 l~~~~~~~~~--~~~~~l~~L~~L~l~~c~ 425 (557)
+++|.+..+. ..+..+++|+.|++.+|+
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 7777665331 335566777777776654
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=3.2e-08 Score=105.50 Aligned_cols=103 Identities=21% Similarity=0.337 Sum_probs=54.6
Q ss_pred cceEeeCCCChh-hhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccc
Q 046626 322 LRVIDLSETAIE-VLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVST 400 (557)
Q Consensus 322 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 400 (557)
++.|+|+++.+. .+|..++++++|+.|+|++|...+.+|..++.+++|+.|++++|.....+|..++.+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445555555554 4455555555555555555543345555555555555555555555555555555555555555555
Q ss_pred cccc-ccccCcCCC-CCCCeeccccc
Q 046626 401 KQKS-LLESGIGCL-SSLRFLMISDC 424 (557)
Q Consensus 401 ~~~~-~~~~~~~~l-~~L~~L~l~~c 424 (557)
|.+. .+|..++.+ .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 5554 445444432 23444444443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=4.4e-08 Score=85.47 Aligned_cols=128 Identities=26% Similarity=0.285 Sum_probs=53.3
Q ss_pred ccCCCCCcEEEecCCCccchhHHHHHHhh-cCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhh-hcC
Q 046626 289 LSDLRRARTILFPINDEKTNQSILTSCIS-KSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSI-CEL 366 (557)
Q Consensus 289 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l 366 (557)
..+..+++.|.+.++...... .+. .+.+|++|++++|.++.+. .+..+++|+.|++++|. +..++..+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-----~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-----NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNL 87 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccccc-----chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhC
Confidence 344556777777765544211 133 4678999999999999875 68889999999999985 88887655 468
Q ss_pred CcCcEeecCCcCCCcccc--ccccCCCCCcEEEcccccccccc----cCcCCCCCCCeeccccc
Q 046626 367 HSLQTLSLGGCRELEELP--KDIRYLVSLRMFMVSTKQKSLLE----SGIGCLSSLRFLMISDC 424 (557)
Q Consensus 367 ~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~L~~L~l~~c 424 (557)
++|++|++++|.. ..+. ..+..+++|++|++.+|.+..-+ .-+..+++|+.||-...
T Consensus 88 p~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 9999999999874 3332 35667899999999999887443 23667888999886543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.3e-08 Score=95.82 Aligned_cols=230 Identities=20% Similarity=0.166 Sum_probs=139.4
Q ss_pred cccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChh---hhccccCCCCccCeeeccCCcCccccch--h
Q 046626 288 LLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIE---VLSREIGNLKHLRYLDLSDNDKIKKLPN--S 362 (557)
Q Consensus 288 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~ 362 (557)
.-.++++|+.+.+........... .....+++++.|||+.|-+. .+..-...|++|+.|+|+.|. +...-. .
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~ 192 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNT 192 (505)
T ss_pred HhhhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccc
Confidence 345678888888875444322211 45677899999999998766 334446789999999999885 332211 1
Q ss_pred hhcCCcCcEeecCCcCCCcc-ccccccCCCCCcEEEccccc-ccccccCcCCCCCCCeecccccccccccc--cceEecc
Q 046626 363 ICELHSLQTLSLGGCRELEE-LPKDIRYLVSLRMFMVSTKQ-KSLLESGIGCLSSLRFLMISDCENLEYFS--LETLMLK 438 (557)
Q Consensus 363 ~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~ 438 (557)
...+..|++|.+++|..... +-...-..++|+.|++..|. +..-.....-+..|++|+|++++.+ .++ -....+.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP 271 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccccccc
Confidence 23678899999999976432 22233457889999999884 3222334456788999999985443 343 2344455
Q ss_pred cCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChh----hccCCCcccceEecccccccc--cCCccCC
Q 046626 439 DCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQW----LLQGSTKTLKNLIIRNCPNFM--ALPESLR 512 (557)
Q Consensus 439 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~----~~~~~l~~L~~L~L~~c~~~~--~lp~~l~ 512 (557)
++..|.++.++. +.+ .+|+. .. ..+++|++|++..|++.. .+- .+.
T Consensus 272 ~L~~Lnls~tgi-------------------------~si-~~~d~~s~~kt-~~f~kL~~L~i~~N~I~~w~sl~-~l~ 323 (505)
T KOG3207|consen 272 GLNQLNLSSTGI-------------------------ASI-AEPDVESLDKT-HTFPKLEYLNISENNIRDWRSLN-HLR 323 (505)
T ss_pred chhhhhccccCc-------------------------chh-cCCCccchhhh-cccccceeeecccCccccccccc-hhh
Confidence 555555443321 111 11211 00 467899999999998732 222 245
Q ss_pred CCCCcceeeecCCCccccccCCCCC-CCCCcccccCceeeCCC
Q 046626 513 NLEALETLAIGGCPALSERCKPQTG-EDWPKIAHIPQVRIDDE 554 (557)
Q Consensus 513 ~l~~L~~L~l~~c~~l~~~~~~~~~-~~~~~~~~l~~l~~l~~ 554 (557)
.+++|+.|.+..++- +...+ .....++.+++|..++-
T Consensus 324 ~l~nlk~l~~~~n~l-----n~e~~~a~~~VIAr~~~l~~LN~ 361 (505)
T KOG3207|consen 324 TLENLKHLRITLNYL-----NKETDTAKLLVIARISQLVKLND 361 (505)
T ss_pred ccchhhhhhcccccc-----cccccceeEEeeeehhhhhhhcc
Confidence 567777777655431 12222 23356777777776654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=2.5e-08 Score=90.91 Aligned_cols=106 Identities=31% Similarity=0.318 Sum_probs=87.4
Q ss_pred CCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcc
Q 046626 320 QFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVS 399 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 399 (557)
+.|..+||++|.++.+-+++.-+|.+++|+++.|. +..+.. +..|++|+.||+++|. +..+-..-..+-|.+.|.++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence 55889999999999999999999999999999985 766655 8889999999999976 55555555577888999999
Q ss_pred cccccccccCcCCCCCCCeeccccccccccc
Q 046626 400 TKQKSLLESGIGCLSSLRFLMISDCENLEYF 430 (557)
Q Consensus 400 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 430 (557)
+|.+..+ +++++|-+|..|+++++ +++.+
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~l 389 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSN-QIEEL 389 (490)
T ss_pred hhhHhhh-hhhHhhhhheecccccc-chhhH
Confidence 9988876 67899999999999884 44444
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=8.8e-09 Score=93.79 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=35.4
Q ss_pred CCCCCcceEEEeCCCCCCC-CChhhccCCCcccceEecccccccccCCc---cCCCCCCcceeeecCC
Q 046626 462 KTRLHLRKLFVEGLPPLLE-LPQWLLQGSTKTLKNLIIRNCPNFMALPE---SLRNLEALETLAIGGC 525 (557)
Q Consensus 462 ~~~~~L~~L~l~~~~~l~~-lp~~~~~~~l~~L~~L~L~~c~~~~~lp~---~l~~l~~L~~L~l~~c 525 (557)
...++|.+|+++++..+.. .-..+ -.++.|++|.++.|... .|. .+...|+|.+|++.||
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~--~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEF--FKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHH--HhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 4556666677766655542 11112 35667777777777643 333 2556677777777776
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.38 E-value=2.5e-06 Score=83.70 Aligned_cols=162 Identities=19% Similarity=0.295 Sum_probs=98.9
Q ss_pred hhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcE
Q 046626 316 ISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRM 395 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 395 (557)
+..+++++.|++++|.++.+|. + ..+|+.|.+++|..+..+|..+ ..+|+.|++++|..+..+|.+ |+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 4456888999999998888872 2 2368999999888888888755 368899999988767767654 555
Q ss_pred EEcccccc---cccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEE
Q 046626 396 FMVSTKQK---SLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFV 472 (557)
Q Consensus 396 L~l~~~~~---~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 472 (557)
|++.++.. ..+| .+|+.|.+.+++..... .. ...-+.+|++|.+
T Consensus 117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~-------------------------~l--p~~LPsSLk~L~I 163 (426)
T PRK15386 117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQA-------------------------RI--DNLISPSLKTLSL 163 (426)
T ss_pred EEeCCCCCcccccCc------chHhheecccccccccc-------------------------cc--ccccCCcccEEEe
Confidence 55554432 2333 23444444321110000 00 0023468999999
Q ss_pred eCCCCCCCCChhhccCCCcccceEecccccccc-cCCccCCCC-CCcceeeecCCCccc
Q 046626 473 EGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFM-ALPESLRNL-EALETLAIGGCPALS 529 (557)
Q Consensus 473 ~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~-~lp~~l~~l-~~L~~L~l~~c~~l~ 529 (557)
.+|... .+|..+ ..+|+.|+++.|.... .++. ..+ +++ .|.+.+|-++.
T Consensus 164 s~c~~i-~LP~~L----P~SLk~L~ls~n~~~sLeI~~--~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 164 TGCSNI-ILPEKL----PESLQSITLHIEQKTTWNISF--EGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred cCCCcc-cCcccc----cccCcEEEecccccccccCcc--ccccccc-EechhhhcccC
Confidence 998765 456544 4689999998764211 1221 122 345 78888876554
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=8.3e-07 Score=94.81 Aligned_cols=91 Identities=22% Similarity=0.302 Sum_probs=81.9
Q ss_pred ccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccc-ccccCcCCCCCCCeeccc
Q 046626 344 HLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS-LLESGIGCLSSLRFLMIS 422 (557)
Q Consensus 344 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 422 (557)
.+..|+|++|...+.+|..++.+++|+.|++++|.....+|..++.+++|+.|++++|.+. .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3788999999877799999999999999999999988899999999999999999999988 789999999999999999
Q ss_pred ccccccccccce
Q 046626 423 DCENLEYFSLET 434 (557)
Q Consensus 423 ~c~~l~~l~~~~ 434 (557)
+|.....+|..+
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 987666777544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=7.8e-07 Score=63.47 Aligned_cols=57 Identities=30% Similarity=0.513 Sum_probs=33.3
Q ss_pred CcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccc-hhhhcCCcCcEeecCCcC
Q 046626 321 FLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCR 378 (557)
Q Consensus 321 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 378 (557)
+|++|++++|.+..+|+ .+..+++|++|++++|. +..+| ..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666665553 45566666666666554 44443 345666666666666654
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.26 E-value=4.9e-08 Score=91.11 Aligned_cols=240 Identities=18% Similarity=0.130 Sum_probs=145.8
Q ss_pred cccccCCCCCcEEEecCCCcc-chhHHHHHHhhcCCCcceEeeCCCC----hhhhcc-------ccCCCCccCeeeccCC
Q 046626 286 SSLLSDLRRARTILFPINDEK-TNQSILTSCISKSQFLRVIDLSETA----IEVLSR-------EIGNLKHLRYLDLSDN 353 (557)
Q Consensus 286 ~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~----~~~l~~-------~~~~l~~L~~L~l~~~ 353 (557)
......+..+..+.++++..+ .........+.+.+.|+.-+++.-- ...+|+ .+...++|++|+||+|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344566788888888877665 2334566777788888888887521 113343 3456678999999998
Q ss_pred cCccccc----hhhhcCCcCcEeecCCcCCCcc-------------ccccccCCCCCcEEEccccccccc-----ccCcC
Q 046626 354 DKIKKLP----NSICELHSLQTLSLGGCRELEE-------------LPKDIRYLVSLRMFMVSTKQKSLL-----ESGIG 411 (557)
Q Consensus 354 ~~~~~lp----~~~~~l~~L~~L~l~~~~~~~~-------------~p~~~~~l~~L~~L~l~~~~~~~~-----~~~~~ 411 (557)
-.-...+ .-+....+|++|.+.+|..-.. .-..+..-++|+++..+.|++..- ...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 6332333 3456788999999998864321 222345678899999888877632 23455
Q ss_pred CCCCCCeeccccccc----ccccccceEecccCCCccccCccccc-cccccccccCCCCCcceEEEeCCCCCC----CCC
Q 046626 412 CLSSLRFLMISDCEN----LEYFSLETLMLKDCESLNLNLNIEME-GEESHCDRNKTRLHLRKLFVEGLPPLL----ELP 482 (557)
Q Consensus 412 ~l~~L~~L~l~~c~~----l~~l~~~~~~l~~l~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~----~lp 482 (557)
..+.|+++.++.+.. ...+...+.+.++++.|++..|-... ........+..+++|+++.+++|.--. .+-
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 667888888776431 11223334455666667666553221 111222233555678888887774221 122
Q ss_pred hhhccCCCcccceEecccccccc----cCCccCCCCCCcceeeecCCC
Q 046626 483 QWLLQGSTKTLKNLIIRNCPNFM----ALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~c~~~~----~lp~~l~~l~~L~~L~l~~c~ 526 (557)
..+. ...|+|+.|.+.+|.+.. .+-.++...|.|+.|+|++|.
T Consensus 263 ~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 263 DALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 2222 347788888888887653 233345557788888888864
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1.8e-06 Score=61.60 Aligned_cols=59 Identities=31% Similarity=0.436 Sum_probs=35.9
Q ss_pred CccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccc
Q 046626 343 KHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQ 402 (557)
Q Consensus 343 ~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 402 (557)
++|++|++++|. +..+|. .|..+++|++|++++|.....-|..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356777777663 666653 45667777777777665433333455666666666666654
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=4e-06 Score=82.34 Aligned_cols=135 Identities=25% Similarity=0.358 Sum_probs=85.4
Q ss_pred cCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccc-cccccccCcCCCCCCC
Q 046626 339 IGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTK-QKSLLESGIGCLSSLR 417 (557)
Q Consensus 339 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~ 417 (557)
+..+.+++.|++++| .+..+|. -..+|++|.+++|..+..+|..+ ..+|+.|.+++| .+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 345678999999988 5888883 23579999999998888888655 357777777776 4445553 344
Q ss_pred eecccc--cccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCC--CCCChhhccCCCccc
Q 046626 418 FLMISD--CENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPL--LELPQWLLQGSTKTL 493 (557)
Q Consensus 418 ~L~l~~--c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~lp~~~~~~~l~~L 493 (557)
.|++.+ |..+..+| ++|+.|.+.++... ..+|. .-+++|
T Consensus 116 ~L~L~~n~~~~L~~LP---------------------------------ssLk~L~I~~~n~~~~~~lp~----~LPsSL 158 (426)
T PRK15386 116 SLEIKGSATDSIKNVP---------------------------------NGLTSLSINSYNPENQARIDN----LISPSL 158 (426)
T ss_pred eEEeCCCCCcccccCc---------------------------------chHhheecccccccccccccc----ccCCcc
Confidence 444432 22222222 34555555432211 11221 124789
Q ss_pred ceEecccccccccCCccCCCCCCcceeeecCC
Q 046626 494 KNLIIRNCPNFMALPESLRNLEALETLAIGGC 525 (557)
Q Consensus 494 ~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c 525 (557)
++|++++|... .+|..+. .+|+.|.++.+
T Consensus 159 k~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 159 KTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 99999999855 4565443 68999998775
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=8.4e-07 Score=81.14 Aligned_cols=211 Identities=18% Similarity=0.136 Sum_probs=128.0
Q ss_pred HHHhhcCCCcceEeeCCCChh---hhccccCCCCccCeeeccCCcC---ccccchhhhcCCcCcEeecCCcCCC-ccccc
Q 046626 313 TSCISKSQFLRVIDLSETAIE---VLSREIGNLKHLRYLDLSDNDK---IKKLPNSICELHSLQTLSLGGCREL-EELPK 385 (557)
Q Consensus 313 ~~~~~~~~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~---~~~lp~~~~~l~~L~~L~l~~~~~~-~~~p~ 385 (557)
..+-.....++.+||.+|.++ .+..-+.++|.|++|+|+.|+. ++.+| -.+.+|++|-+.|.... .....
T Consensus 64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhh
Confidence 333445678899999999887 3444467899999999997753 23344 25678899988886542 23344
Q ss_pred cccCCCCCcEEEcccccccccc---cCcCCC-CCCCeecccccccccccccceEecccCCCccccCcccccccccccccc
Q 046626 386 DIRYLVSLRMFMVSTKQKSLLE---SGIGCL-SSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRN 461 (557)
Q Consensus 386 ~~~~l~~L~~L~l~~~~~~~~~---~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~ 461 (557)
.+..+++++.|+++.|....+- ..+... +.+.+|.+.+|....+... +...
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~-------------------------~~l~ 195 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK-------------------------NKLS 195 (418)
T ss_pred hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH-------------------------HhHH
Confidence 5567888888888877554221 111111 2455555555543332211 0111
Q ss_pred CCCCCcceEEEeCCCCCC-CCChhhccCCCcccceEeccccccccc-CCccCCCCCCcceeeecCCCccccccCCCCCCC
Q 046626 462 KTRLHLRKLFVEGLPPLL-ELPQWLLQGSTKTLKNLIIRNCPNFMA-LPESLRNLEALETLAIGGCPALSERCKPQTGED 539 (557)
Q Consensus 462 ~~~~~L~~L~l~~~~~l~-~lp~~~~~~~l~~L~~L~L~~c~~~~~-lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 539 (557)
..++++..+.+..||--. +-.... ..++.+--|.|.-+++-.. --+.+..+|.|..|.+.+.|-+..... ....
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~s--e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err 271 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGS--EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERR 271 (418)
T ss_pred hhcccchheeeecCcccchhhcccC--CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--Ccce
Confidence 445666666666654211 111112 4456666777776664321 233477899999999999987766544 2334
Q ss_pred CCcccccCceeeCCCC
Q 046626 540 WPKIAHIPQVRIDDES 555 (557)
Q Consensus 540 ~~~~~~l~~l~~l~~~ 555 (557)
+..++++++++.|+.|
T Consensus 272 ~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 272 FLLIARLTKVQVLNGS 287 (418)
T ss_pred EEEEeeccceEEecCc
Confidence 5678999999999876
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.18 E-value=2.6e-07 Score=86.35 Aligned_cols=207 Identities=18% Similarity=0.136 Sum_probs=92.1
Q ss_pred hhcCCCcceEeeCCCChh-----hhccccCCCCccCeeeccCCc---Cccccchhh-------hcCCcCcEeecCCcCCC
Q 046626 316 ISKSQFLRVIDLSETAIE-----VLSREIGNLKHLRYLDLSDND---KIKKLPNSI-------CELHSLQTLSLGGCREL 380 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~---~~~~lp~~~-------~~l~~L~~L~l~~~~~~ 380 (557)
...+..++.++|++|.+. .+.+.+.+.++|+..++++-- ...++|..+ -..+.|++|||+.|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 444555666666666555 233445555566666665421 112333322 23446666666665443
Q ss_pred cccccc----ccCCCCCcEEEccccccccc--------------ccCcCCCCCCCeecccccccccccc-----cceEec
Q 046626 381 EELPKD----IRYLVSLRMFMVSTKQKSLL--------------ESGIGCLSSLRFLMISDCENLEYFS-----LETLML 437 (557)
Q Consensus 381 ~~~p~~----~~~l~~L~~L~l~~~~~~~~--------------~~~~~~l~~L~~L~l~~c~~l~~l~-----~~~~~l 437 (557)
...+.. +...+.|++|++.+|.+... ..-++.-++|+++..+. ++++.-+ ..+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhc
Confidence 333322 23455666666666544311 11234445555555543 3333322 111112
Q ss_pred ccCCCccccCcccccccc-ccccccCCCCCcceEEEeCCCCCC----CCChhhccCCCcccceEecccccccccCCccC-
Q 046626 438 KDCESLNLNLNIEMEGEE-SHCDRNKTRLHLRKLFVEGLPPLL----ELPQWLLQGSTKTLKNLIIRNCPNFMALPESL- 511 (557)
Q Consensus 438 ~~l~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~----~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l- 511 (557)
..++.+.++.|...+.+. .....+...++|+.|++.+..... .+...+ ..+++|+.|++++|.....-...+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL--~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL--SSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh--cccchheeecccccccccccHHHHH
Confidence 344455555444332222 222233455566666665422110 111222 345556666666665433221111
Q ss_pred ----CCCCCcceeeecCC
Q 046626 512 ----RNLEALETLAIGGC 525 (557)
Q Consensus 512 ----~~l~~L~~L~l~~c 525 (557)
...|+|+.|.+.+|
T Consensus 263 ~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHhccCCCCceeccCcc
Confidence 12456666666664
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=6.1e-07 Score=91.53 Aligned_cols=107 Identities=29% Similarity=0.382 Sum_probs=84.2
Q ss_pred HhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCc
Q 046626 315 CISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLR 394 (557)
Q Consensus 315 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 394 (557)
.+..++.|..|++..|.+..+...+..+++|++|++++|. +..+.. +..++.|+.|++.+|. +..++ .+..+++|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCccchhhh
Confidence 3667888999999999999887668889999999999884 777765 7788889999999887 44443 455588899
Q ss_pred EEEcccccccccccC-cCCCCCCCeecccccc
Q 046626 395 MFMVSTKQKSLLESG-IGCLSSLRFLMISDCE 425 (557)
Q Consensus 395 ~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~ 425 (557)
.+++++|.+..+... ...+.+|+.+.+.++.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 999999988866543 4777888888887743
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.7e-08 Score=89.78 Aligned_cols=179 Identities=20% Similarity=0.145 Sum_probs=96.1
Q ss_pred ccCeeeccCCcCcc--ccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccc-ccc--cccCcCCCCCCCe
Q 046626 344 HLRYLDLSDNDKIK--KLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQ-KSL--LESGIGCLSSLRF 418 (557)
Q Consensus 344 ~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~l~~L~~ 418 (557)
.|++|||++.. ++ .+-.-++.+.+|+.|.+.|+..-..+-..+.+-.+|+.++++.+. ++. +---+..++.|+.
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46777777543 32 233334555666666666655444444444444455555554432 110 0111334444444
Q ss_pred ecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCCh-hhccCCCcccceEe
Q 046626 419 LMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ-WLLQGSTKTLKNLI 497 (557)
Q Consensus 419 L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~~~l~~L~~L~ 497 (557)
|+++.|-..... .-...-..-++|..|+|+||..--.... .......++|..||
T Consensus 265 LNlsWc~l~~~~-------------------------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 265 LNLSWCFLFTEK-------------------------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred cCchHhhccchh-------------------------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 444444322210 0001112335777888888754211111 11125789999999
Q ss_pred ccccccccc-CCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCC
Q 046626 498 IRNCPNFMA-LPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDES 555 (557)
Q Consensus 498 L~~c~~~~~-lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~ 555 (557)
|++|..++. .-..+-+++.|++|.++.|. .+..+....+...|+|..||.-
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY-------~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCY-------DIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhc-------CCChHHeeeeccCcceEEEEec
Confidence 999987763 12236679999999999994 3333444556778888887753
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.97 E-value=2.1e-06 Score=87.51 Aligned_cols=127 Identities=28% Similarity=0.332 Sum_probs=84.2
Q ss_pred cccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCC
Q 046626 288 LLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELH 367 (557)
Q Consensus 288 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 367 (557)
.+..+..+..+.+..+....... .+..+.+|++|++++|.|..+. .+..++.|+.|++++|. +..++. +..+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~----~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~ 162 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIEN----LLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLK 162 (414)
T ss_pred ccccccceeeeeccccchhhccc----chhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccch
Confidence 35667777887777555432221 1556788888888888888763 46667778888888885 777664 66688
Q ss_pred cCcEeecCCcCCCcccccc-ccCCCCCcEEEcccccccccccCcCCCCCCCeecccc
Q 046626 368 SLQTLSLGGCRELEELPKD-IRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISD 423 (557)
Q Consensus 368 ~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 423 (557)
+|+.+++++|... .++.. ...+.+++.+++.+|.+..+. .+..+..+..+++..
T Consensus 163 ~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 163 SLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD 217 (414)
T ss_pred hhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc
Confidence 8888888887743 33322 567788888888888776552 333444444444443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.3e-05 Score=52.26 Aligned_cols=39 Identities=38% Similarity=0.531 Sum_probs=22.3
Q ss_pred CcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccc
Q 046626 321 FLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLP 360 (557)
Q Consensus 321 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp 360 (557)
+|++|++++|+++.+|+.+++|++|++|++++|. +..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4566666666666666556666666666666663 44443
No 50
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.89 E-value=0.0004 Score=78.95 Aligned_cols=204 Identities=12% Similarity=0.115 Sum_probs=123.1
Q ss_pred CceEEEEEeCCCCCChhhHH-HHHHhcCCCCCCcEEEEecCChHHHH--HhcCCCCCCcEEcC----CCChhhhHHHHHH
Q 046626 12 GKRYLFVMDDVWNEDPKVWD-ELKSLLWGGAKGSKILVTTRSNKVAS--IMGTMRGTGGYKLE----GLPYESCLSLFMK 84 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~-~l~~~~~~~~~gsrIivTtr~~~v~~--~~~~~~~~~~~~~~----~L~~~~a~~Lf~~ 84 (557)
+.+++|||||+...+..... .+...+....++.++|||||...-.. ..... ....++. +++.+|+.++|..
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~--~~~~~l~~~~l~f~~~e~~~ll~~ 197 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR--DQLLEIGSQQLAFDHQEAQQFFDQ 197 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhc--CcceecCHHhCCCCHHHHHHHHHh
Confidence 67899999999544333333 34444444455678989999842111 11111 1145555 8999999999987
Q ss_pred HhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHHHHHHhhhcccccc-ccCCchhhHhh-cccCCCh
Q 046626 85 CAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIWKLEQ-KENDILPALKL-SYDQLPP 162 (557)
Q Consensus 85 ~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w~~l~~~~~~~~~~-~~~~i~~~L~~-sy~~L~~ 162 (557)
.... ..+ ...+.++.+.|+|.|+++..++..+.+....... .. ..+.. ....+...+.- .++.|++
T Consensus 198 ~~~~---~~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~l~~~v~~~l~~ 265 (903)
T PRK04841 198 RLSS---PIE---AAESSRLCDDVEGWATALQLIALSARQNNSSLHD-SA-----RRLAGINASHLSDYLVEEVLDNVDL 265 (903)
T ss_pred ccCC---CCC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhh-hh-----HhhcCCCchhHHHHHHHHHHhcCCH
Confidence 6521 111 2345789999999999999999887654321100 00 01111 12335554433 4789999
Q ss_pred hhHHHhhhhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCceeccCCCCCCCcceeEEEEcH
Q 046626 163 HLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQDFSNGMLPEGFEIFFFKMHD 242 (557)
Q Consensus 163 ~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~~~~~~~~~~~~~~~~~h~ 242 (557)
..+..+...|+++ .++. .+..... | . +.+...+..+.+.+++....+ +...++++|+
T Consensus 266 ~~~~~l~~~a~~~---~~~~-~l~~~l~--~-------~----~~~~~~L~~l~~~~l~~~~~~------~~~~~yr~H~ 322 (903)
T PRK04841 266 ETRHFLLRCSVLR---SMND-ALIVRVT--G-------E----ENGQMRLEELERQGLFIQRMD------DSGEWFRYHP 322 (903)
T ss_pred HHHHHHHHhcccc---cCCH-HHHHHHc--C-------C----CcHHHHHHHHHHCCCeeEeec------CCCCEEehhH
Confidence 9999999999986 2332 2222111 1 1 124567889999998643211 1123678899
Q ss_pred HHHHHHHHHh
Q 046626 243 LMHDLAQLVA 252 (557)
Q Consensus 243 ~i~~l~~~~~ 252 (557)
+++++.....
T Consensus 323 L~r~~l~~~l 332 (903)
T PRK04841 323 LFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHH
Confidence 9999886553
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=3.1e-05 Score=50.57 Aligned_cols=35 Identities=43% Similarity=0.631 Sum_probs=24.7
Q ss_pred CccCeeeccCCcCccccchhhhcCCcCcEeecCCcC
Q 046626 343 KHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCR 378 (557)
Q Consensus 343 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~ 378 (557)
++|++|++++|. +..+|..+++|++|++|++++|+
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 467778888774 77777777777888888877775
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.74 E-value=2.4e-06 Score=81.89 Aligned_cols=108 Identities=23% Similarity=0.269 Sum_probs=55.1
Q ss_pred eEEEEeecCCCC-cccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCC-CChh--hhccccCCCCcc
Q 046626 270 VCHLSFVGANTS-RNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSE-TAIE--VLSREIGNLKHL 345 (557)
Q Consensus 270 ~~~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--~l~~~~~~l~~L 345 (557)
++.+++.+..-. ......+...++++..|.+.++. ......+...-..++.|+.|++.. ..++ .+-.-...+++|
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~-~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK-KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcce-eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 444555444221 22223334456666666555443 333344444455677777787777 3444 222233456777
Q ss_pred CeeeccCCcCccc--cchhhhcCCcCcEeecCCcC
Q 046626 346 RYLDLSDNDKIKK--LPNSICELHSLQTLSLGGCR 378 (557)
Q Consensus 346 ~~L~l~~~~~~~~--lp~~~~~l~~L~~L~l~~~~ 378 (557)
+||+++.|..+.. +-.-......|+.+.++||.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 8888887765443 11223344445555555554
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=2e-06 Score=87.90 Aligned_cols=125 Identities=25% Similarity=0.192 Sum_probs=83.3
Q ss_pred CcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccc
Q 046626 321 FLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVST 400 (557)
Q Consensus 321 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 400 (557)
.|.+.+.++|.+..+-.++.-++.|+.|+|+.|+ ..... .+..++.|++|||+.|. +..+|.--..=.+|+.|.+.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence 3667777788887777777778888888888885 55554 57788888888888876 666665333334588888888
Q ss_pred ccccccccCcCCCCCCCeecccccccccccccce-EecccCCCccccCcc
Q 046626 401 KQKSLLESGIGCLSSLRFLMISDCENLEYFSLET-LMLKDCESLNLNLNI 449 (557)
Q Consensus 401 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~l~~l~l~~~~ 449 (557)
|.++.+ .++.+|++|+.||++.|-..+.-.+.. ..|..+..|.|.+|+
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888776 467888888888888642222111111 123445555555554
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=0.00011 Score=78.77 Aligned_cols=133 Identities=19% Similarity=0.258 Sum_probs=85.1
Q ss_pred CceEEEEeecCCCCcccccccc-cCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLL-SDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 346 (557)
.+++++.+.+.......++... ..++.|++|.+.+-. .....+......+++|..||+++++++.+ .++++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~--~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ--FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce--ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 3567777766544433333333 358888888886433 22333566677888999999999888877 6788888999
Q ss_pred eeeccCCcCccccc--hhhhcCCcCcEeecCCcCCCccc--c----ccccCCCCCcEEEccccccc
Q 046626 347 YLDLSDNDKIKKLP--NSICELHSLQTLSLGGCRELEEL--P----KDIRYLVSLRMFMVSTKQKS 404 (557)
Q Consensus 347 ~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~--p----~~~~~l~~L~~L~l~~~~~~ 404 (557)
.|.+++=. ++.-+ ..+..|++|++||++........ . +.-..|++||.||.+++.+.
T Consensus 199 ~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88888543 33222 24678888999998875432211 0 11123677777777766544
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=1.4e-05 Score=64.89 Aligned_cols=100 Identities=22% Similarity=0.325 Sum_probs=47.1
Q ss_pred cceEeeCCCChhhhccc---cCCCCccCeeeccCCcCccccchhhhc-CCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 322 LRVIDLSETAIEVLSRE---IGNLKHLRYLDLSDNDKIKKLPNSICE-LHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~---~~~l~~L~~L~l~~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
+..++|+.+.+-.++.. +....+|...+|++|. .+.+|..|.. ++.+++|++.+|. +..+|.++..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 34445555444433322 3333444455555543 4445544432 2345555555433 445555555555555555
Q ss_pred cccccccccccCcCCCCCCCeecccc
Q 046626 398 VSTKQKSLLESGIGCLSSLRFLMISD 423 (557)
Q Consensus 398 l~~~~~~~~~~~~~~l~~L~~L~l~~ 423 (557)
++.|.+...|.-+..|.+|-.|+.-+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCC
Confidence 55555554444444455554444443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=0.00014 Score=77.87 Aligned_cols=130 Identities=22% Similarity=0.189 Sum_probs=79.6
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChh--hhccccCCCCccCeeeccCCcCccccchhhhcCCcC
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIE--VLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSL 369 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 369 (557)
-.+|+.|.+.+. ......++...-..+|.|+.|.+.+-.+. .+..-..++++|..||+|++. +..+ ..++.|++|
T Consensus 121 r~nL~~LdI~G~-~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGS-ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCcccc-chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccH
Confidence 356677777542 22344455555556788888888776654 333445677888888888764 6666 568888888
Q ss_pred cEeecCCcCCCc-cccccccCCCCCcEEEcccccccccc-------cCcCCCCCCCeeccccc
Q 046626 370 QTLSLGGCRELE-ELPKDIRYLVSLRMFMVSTKQKSLLE-------SGIGCLSSLRFLMISDC 424 (557)
Q Consensus 370 ~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~-------~~~~~l~~L~~L~l~~c 424 (557)
|+|.+++=.... .--..+.+|++|++||+|.......+ +--..|++|+.||.++.
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 888776522111 11125667888888888864432111 11223677888877753
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=5.7e-05 Score=61.35 Aligned_cols=94 Identities=21% Similarity=0.328 Sum_probs=65.0
Q ss_pred HHhhcCCCcceEeeCCCChhhhccccCCC-CccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCC
Q 046626 314 SCISKSQFLRVIDLSETAIEVLSREIGNL-KHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVS 392 (557)
Q Consensus 314 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~l-~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 392 (557)
..+.+...|...++++|.+..+|+.+... +.+..|++.+|. +..+|..+..++.|+.|+++.|+ +...|.-+..|.+
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIK 124 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHh
Confidence 34555566777777777777777766543 367777777764 77777777777777777777766 5566666666777
Q ss_pred CcEEEcccccccccccC
Q 046626 393 LRMFMVSTKQKSLLESG 409 (557)
Q Consensus 393 L~~L~l~~~~~~~~~~~ 409 (557)
|-.|+..+|....+|..
T Consensus 125 l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 125 LDMLDSPENARAEIDVD 141 (177)
T ss_pred HHHhcCCCCccccCcHH
Confidence 77777777776665543
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.25 E-value=1.4e-05 Score=81.94 Aligned_cols=111 Identities=25% Similarity=0.229 Sum_probs=67.1
Q ss_pred HHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCC
Q 046626 311 ILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYL 390 (557)
Q Consensus 311 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l 390 (557)
.+...+.-++.|+.|+|++|++++.- .+..+++|+.|||++|. +..+|..--.-..|+.|++++|. +..+- ++.+|
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~-l~tL~-gie~L 253 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNA-LTTLR-GIENL 253 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccH-HHhhh-hHHhh
Confidence 34444555566777777777777654 56667777777777774 66666521112347777777654 43432 66677
Q ss_pred CCCcEEEccccccccc--ccCcCCCCCCCeecccccc
Q 046626 391 VSLRMFMVSTKQKSLL--ESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 391 ~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~c~ 425 (557)
.+|+.|+++.|-+... -..+..|..|..|.|.||+
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777777765421 1224455666667776643
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.21 E-value=3.7e-05 Score=69.76 Aligned_cols=86 Identities=23% Similarity=0.266 Sum_probs=51.6
Q ss_pred cCCCcceEeeCCCChh-----hhccccCCCCccCeeeccCCcCcc----ccchh-------hhcCCcCcEeecCCcCCCc
Q 046626 318 KSQFLRVIDLSETAIE-----VLSREIGNLKHLRYLDLSDNDKIK----KLPNS-------ICELHSLQTLSLGGCRELE 381 (557)
Q Consensus 318 ~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~----~lp~~-------~~~l~~L~~L~l~~~~~~~ 381 (557)
.+..+..++|++|.|. .+...+.+-.+|+..++++- ..+ ++|++ +-+++.|++.+++.|-...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3566677777777665 23444555666777666643 121 23332 3356777777777776655
Q ss_pred ccccc----ccCCCCCcEEEccccccc
Q 046626 382 ELPKD----IRYLVSLRMFMVSTKQKS 404 (557)
Q Consensus 382 ~~p~~----~~~l~~L~~L~l~~~~~~ 404 (557)
+.|+. ++.-+.|.||.+++|.+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 55543 355667777777777655
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.91 E-value=5.6e-05 Score=72.75 Aligned_cols=218 Identities=17% Similarity=0.137 Sum_probs=105.0
Q ss_pred HHHHHHhhcCCCcceEeeCCCC-hh--hhccccCCCCccCeeeccCCcCcccc--chhhhcCCcCcEeecCCcCCCcc--
Q 046626 310 SILTSCISKSQFLRVIDLSETA-IE--VLSREIGNLKHLRYLDLSDNDKIKKL--PNSICELHSLQTLSLGGCRELEE-- 382 (557)
Q Consensus 310 ~~~~~~~~~~~~L~~L~l~~~~-~~--~l~~~~~~l~~L~~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~~~~~-- 382 (557)
.-+......++++..|.+.++. ++ .+-.--..+++|++|++..|..+... -.....+++|++|++++|+.+..
T Consensus 154 sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 3344556677888888877765 22 11122245678999999887655432 22234678899999999875543
Q ss_pred ccccccCCCCCcEEEccccccc---ccccCcCCCCCCCeecccccccccccccce--EecccCCCccccCcccccccccc
Q 046626 383 LPKDIRYLVSLRMFMVSTKQKS---LLESGIGCLSSLRFLMISDCENLEYFSLET--LMLKDCESLNLNLNIEMEGEESH 457 (557)
Q Consensus 383 ~p~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~l~~l~~l~l~~~~~~~~~~~~ 457 (557)
+..-.....+++.+...+|.-. .+...-+...-+..+++..|+.+..-.+.. .....++.+..+.... ..+...
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-~~d~~l 312 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-ITDEVL 312 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-CchHHH
Confidence 1111223333444444443221 111111222334444555555444332111 0111223333221111 112222
Q ss_pred ccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccccc--CCccCCCCCCcceeeecCCCcc
Q 046626 458 CDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMA--LPESLRNLEALETLAIGGCPAL 528 (557)
Q Consensus 458 ~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~--lp~~l~~l~~L~~L~l~~c~~l 528 (557)
........+|+.+.+.+|..+...--.......+.|+.+++.+|..... +-..-.+++.|+.|.++.|...
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~i 385 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELI 385 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhh
Confidence 2222444667777777766544332222224566677777776654321 1111234667777777766543
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.00023 Score=65.55 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=110.2
Q ss_pred ceEeeCCCChhhhc--ccc-CCCCccCeeeccCCcCcccc---chhhhcCCcCcEeecCCcCCCccccccc-cCCCCCcE
Q 046626 323 RVIDLSETAIEVLS--REI-GNLKHLRYLDLSDNDKIKKL---PNSICELHSLQTLSLGGCRELEELPKDI-RYLVSLRM 395 (557)
Q Consensus 323 ~~L~l~~~~~~~l~--~~~-~~l~~L~~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~ 395 (557)
..|-+.++.+...- ..+ ....+++.|||.+|. +... -.-+.+|+.|++|+++.|+....+ ... -.+.+|+.
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRV 125 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEE
Confidence 34445555544221 112 245679999999985 5443 334568999999999987643222 222 35678999
Q ss_pred EEccccccc--ccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEe
Q 046626 396 FMVSTKQKS--LLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVE 473 (557)
Q Consensus 396 L~l~~~~~~--~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 473 (557)
|-+.+..+. .....+..++.+++|.++.+ .++.+.+.-...+ ...+.+.++...
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e-----------------------~~s~~v~tlh~~ 181 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNCIE-----------------------DWSTEVLTLHQL 181 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc-hhhhhcccccccc-----------------------ccchhhhhhhcC
Confidence 999887765 55566778888899988874 3443332211111 122334444444
Q ss_pred CCCCCC--CCChhhccCCCcccceEeccccccccc-CCccCCCCCCcceeeecCCCccccccCCCCC-CCCCcccccCce
Q 046626 474 GLPPLL--ELPQWLLQGSTKTLKNLIIRNCPNFMA-LPESLRNLEALETLAIGGCPALSERCKPQTG-EDWPKIAHIPQV 549 (557)
Q Consensus 474 ~~~~l~--~lp~~~~~~~l~~L~~L~L~~c~~~~~-lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~~~~~~l~~l 549 (557)
+|.... .+-.. ..-+|++..+-+-.|+..+. --.....+|.+-.|+|..+ ++.. .....+..+|+|
T Consensus 182 ~c~~~~w~~~~~l--~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~--------~idswasvD~Ln~f~~l 251 (418)
T KOG2982|consen 182 PCLEQLWLNKNKL--SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN--------NIDSWASVDALNGFPQL 251 (418)
T ss_pred CcHHHHHHHHHhH--HhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc--------ccccHHHHHHHcCCchh
Confidence 443211 00000 13468888888888875432 2223455666767777652 2211 111234556666
Q ss_pred eeCCCCCC
Q 046626 550 RIDDESDN 557 (557)
Q Consensus 550 ~~l~~~~n 557 (557)
..+.+++|
T Consensus 252 ~dlRv~~~ 259 (418)
T KOG2982|consen 252 VDLRVSEN 259 (418)
T ss_pred heeeccCC
Confidence 65555543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.59 E-value=0.0029 Score=55.27 Aligned_cols=99 Identities=23% Similarity=0.267 Sum_probs=42.2
Q ss_pred cceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhh-cCCcCcEeecCCcCCCccccc--cccCCCCCcEEEc
Q 046626 322 LRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSIC-ELHSLQTLSLGGCRELEELPK--DIRYLVSLRMFMV 398 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l 398 (557)
...+||+.|.+..+ ..+..++.|..|.+.+|. +..+...+. .+++|++|.+.+|+ +.++-+ .+..+++|+.|.+
T Consensus 44 ~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc-ccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeee
Confidence 44555555555443 234445555555555543 333322232 33445555555543 222211 1223444555554
Q ss_pred ccccccccc----cCcCCCCCCCeecccc
Q 046626 399 STKQKSLLE----SGIGCLSSLRFLMISD 423 (557)
Q Consensus 399 ~~~~~~~~~----~~~~~l~~L~~L~l~~ 423 (557)
-+|....-+ ..+..+++|++||+.+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 444433211 1234445555555443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.41 E-value=0.0052 Score=53.75 Aligned_cols=101 Identities=27% Similarity=0.397 Sum_probs=55.0
Q ss_pred cceEeeCCCChhhhccccCC-CCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccc
Q 046626 322 LRVIDLSETAIEVLSREIGN-LKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVST 400 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 400 (557)
-+.+++.+.++...-. ++. +.+...+||++|. +..++. +..+++|.+|.+++|.....-|.--.-+++|..|.+.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNd-l~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDND-LRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccc-hhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3445555544432221 221 2245566777664 555543 55667777777776664444443333455677777777
Q ss_pred ccccccc--cCcCCCCCCCeecccccc
Q 046626 401 KQKSLLE--SGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 401 ~~~~~~~--~~~~~l~~L~~L~l~~c~ 425 (557)
|++..+. ..+..+++|++|.+-+++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCc
Confidence 7665331 234556667777666644
No 64
>PRK06893 DNA replication initiation factor; Validated
Probab=96.37 E-value=0.015 Score=53.98 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=63.4
Q ss_pred EEEEEeCCCCCC-hhhHHH-HHHhcCCC-CCCcEEEEe-cCC---------hHHHHHhcCCCCCCcEEcCCCChhhhHHH
Q 046626 15 YLFVMDDVWNED-PKVWDE-LKSLLWGG-AKGSKILVT-TRS---------NKVASIMGTMRGTGGYKLEGLPYESCLSL 81 (557)
Q Consensus 15 ~LlVlDdv~~~~-~~~~~~-l~~~~~~~-~~gsrIivT-tr~---------~~v~~~~~~~~~~~~~~~~~L~~~~a~~L 81 (557)
-+|||||+|... ...|+. +...+... ..|+.|||+ ++. .++...+.... .++++.++.++.+++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~---~~~l~~pd~e~~~~i 169 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGE---IYQLNDLTDEQKIIV 169 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCC---eeeCCCCCHHHHHHH
Confidence 489999998532 234553 33433322 235666554 443 46666666554 899999999999999
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 82 FMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 82 f~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
+.+.++..+-... .++..-+++++.|-.-++..+
T Consensus 170 L~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 170 LQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 9999976543332 455677888888765554433
No 65
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.28 E-value=0.073 Score=50.83 Aligned_cols=112 Identities=23% Similarity=0.220 Sum_probs=71.4
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCC---CCCcEEEEecCChHHHHHhcC-------CCCCCcEEcCCCChhhhHH
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGG---AKGSKILVTTRSNKVASIMGT-------MRGTGGYKLEGLPYESCLS 80 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~---~~gsrIivTtr~~~v~~~~~~-------~~~~~~~~~~~L~~~~a~~ 80 (557)
.++++++|+||+|.-+...++.+....... .....|++|.... ....... ......+++.+++.++..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 678899999999877666677666443211 2223455655432 2211110 0011257899999999999
Q ss_pred HHHHHhccCCCCCC-hhHHHHHHHHHHHhCCChhHHHHHHHhhc
Q 046626 81 LFMKCAFKEGQHKN-PNLVKIGEEIVKKSGGIPLAVRTLGSLLY 123 (557)
Q Consensus 81 Lf~~~a~~~~~~~~-~~~~~l~~~i~~~c~glPlal~~ig~~L~ 123 (557)
++...+...+.... .--.+....|++.++|.|..|..++..+.
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 98877643332111 11246778999999999999999987764
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.21 E-value=0.0021 Score=58.52 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=16.2
Q ss_pred CCCccCeeeccCC--cCccccchhhhcCCcCcEeecCCcC
Q 046626 341 NLKHLRYLDLSDN--DKIKKLPNSICELHSLQTLSLGGCR 378 (557)
Q Consensus 341 ~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~l~~~~ 378 (557)
.|++|++|.++.| .....++....++++|++|++++|+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3444555555544 2222333333344455555554443
No 67
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.13 E-value=0.056 Score=53.29 Aligned_cols=124 Identities=18% Similarity=0.090 Sum_probs=71.1
Q ss_pred CcEEEEecCChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhh
Q 046626 43 GSKILVTTRSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLL 122 (557)
Q Consensus 43 gsrIivTtr~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L 122 (557)
.+-|..||+...+...... .....+++..++.++..+++...+...+...+ .+.+..|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~s-Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD-RFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH-hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHH
Confidence 3456667775433221100 00126899999999999999988865544333 3457899999999997555555433
Q ss_pred cCCCChHHHHHHHhhhccccccccCCchhhHhhcccCCChhhHHHhh-hhccCCCC
Q 046626 123 YGSTDEHYWEYVRDNEIWKLEQKENDILPALKLSYDQLPPHLKQCFA-YCSIFPKD 177 (557)
Q Consensus 123 ~~~~~~~~w~~l~~~~~~~~~~~~~~i~~~L~~sy~~L~~~~k~~fl-~~a~fp~~ 177 (557)
. .|....+..... ...-......+...+..|++..+..+. ....|..+
T Consensus 227 ~------~~a~~~~~~~I~-~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 227 R------DFAQVKGDGVIT-KEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG 275 (328)
T ss_pred H------HHHHHcCCCCCC-HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 2 111111100000 000122334567788889888888775 55566544
No 68
>PF05729 NACHT: NACHT domain
Probab=96.06 E-value=0.019 Score=50.07 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=49.3
Q ss_pred CCceEEEEEeCCCCCChh-------hHHH-HHHhcCC-CCCCcEEEEecCChHHH---HHhcCCCCCCcEEcCCCChhhh
Q 046626 11 NGKRYLFVMDDVWNEDPK-------VWDE-LKSLLWG-GAKGSKILVTTRSNKVA---SIMGTMRGTGGYKLEGLPYESC 78 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~-------~~~~-l~~~~~~-~~~gsrIivTtr~~~v~---~~~~~~~~~~~~~~~~L~~~~a 78 (557)
+.+++++|+|++.+-... .+.. +...+.. ..++.+|+||+|..... ...... ..+++.++++++.
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA---QILELEPFSEEDI 155 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC---cEEEECCCCHHHH
Confidence 578999999999543221 1222 2233333 35689999999997662 223332 3799999999999
Q ss_pred HHHHHHHh
Q 046626 79 LSLFMKCA 86 (557)
Q Consensus 79 ~~Lf~~~a 86 (557)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99987653
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.0054 Score=55.97 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=62.5
Q ss_pred cCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCc--CCCccccccccCCCCCcEEEccccccccc--ccCcCCCC
Q 046626 339 IGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGC--RELEELPKDIRYLVSLRMFMVSTKQKSLL--ESGIGCLS 414 (557)
Q Consensus 339 ~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~ 414 (557)
...+.+|+.|++.++. +..+-. +-.|++|+.|.++.| +....++..+..+++|+++.+++|.++.+ ...+..+.
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccc-eeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3345567777777653 333322 446889999999998 55667776677779999999999998742 13356677
Q ss_pred CCCeeccccccccc
Q 046626 415 SLRFLMISDCENLE 428 (557)
Q Consensus 415 ~L~~L~l~~c~~l~ 428 (557)
+|..|++..|+...
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 88888998886544
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.70 E-value=0.22 Score=48.50 Aligned_cols=188 Identities=15% Similarity=0.072 Sum_probs=97.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCC-------------------CCCCcEEEEecCChHHHHHhcCCCCCCcEEcCCC
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWG-------------------GAKGSKILVTTRSNKVASIMGTMRGTGGYKLEGL 73 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~-------------------~~~gsrIivTtr~~~v~~~~~~~~~~~~~~~~~L 73 (557)
...++++|++..-.....+.+...+.. ..+.+-|.+||+...+...... .....++++.+
T Consensus 81 ~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s-R~~~~~~l~~l 159 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD-RFGIILRLEFY 159 (305)
T ss_pred cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh-hcceEEEeCCC
Confidence 456899999954333333333332211 1124455667776433322100 00126899999
Q ss_pred ChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHHHHHHhhhccccc-cccCCchhh
Q 046626 74 PYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIWKLE-QKENDILPA 152 (557)
Q Consensus 74 ~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w~~l~~~~~~~~~-~~~~~i~~~ 152 (557)
+.++..+++...+.......+ .+....+++.|+|.|-.+..+...+. ............ ..-......
T Consensus 160 ~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 160 TVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVR--------DFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHH--------HHHHHcCCCCcCHHHHHHHHHH
Confidence 999999999988764433322 34567899999999977655554332 111000000000 000122233
Q ss_pred HhhcccCCChhhHHHhh-hhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHH-HHHhCCCceecc
Q 046626 153 LKLSYDQLPPHLKQCFA-YCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLN-ELLSRSFFQDFS 225 (557)
Q Consensus 153 L~~sy~~L~~~~k~~fl-~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~-~Li~~~ll~~~~ 225 (557)
+...|..+++..+..+. .++.+..+ .+....+...+ | . ....+...++ .|+++++++...
T Consensus 229 l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---~------~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 229 LMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---E------DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---C------CcchHHHhhhHHHHHcCCcccCC
Confidence 56678888888877665 44555432 33322222111 1 0 0112444456 588888886543
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.28 E-value=0.0045 Score=64.74 Aligned_cols=111 Identities=23% Similarity=0.224 Sum_probs=50.6
Q ss_pred CCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCC-Ch-h----hhccccCCCCccCeeeccCCcCcccc--chh
Q 046626 291 DLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSET-AI-E----VLSREIGNLKHLRYLDLSDNDKIKKL--PNS 362 (557)
Q Consensus 291 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~-~----~l~~~~~~l~~L~~L~l~~~~~~~~l--p~~ 362 (557)
.++.++.+.+.....-.. .........++.|+.|+++++ .. . ........+.+|+.|+++++..+... ..-
T Consensus 186 ~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITD-DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCCh-hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 355555555543322111 113344555666777776652 11 1 11122334456666676666432211 111
Q ss_pred hhcCCcCcEeecCCcCCC--ccccccccCCCCCcEEEccccc
Q 046626 363 ICELHSLQTLSLGGCREL--EELPKDIRYLVSLRMFMVSTKQ 402 (557)
Q Consensus 363 ~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~ 402 (557)
...+++|++|.+.+|..+ ..+-.....+++|++|+++.+.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 112566677666666531 1121222345556666666543
No 72
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.25 E-value=0.43 Score=51.27 Aligned_cols=203 Identities=16% Similarity=0.190 Sum_probs=124.0
Q ss_pred CceEEEEEeCCCCCChhhH-HHHHHhcCCCCCCcEEEEecCChHHHHH--hcCCCCCCcEEc----CCCChhhhHHHHHH
Q 046626 12 GKRYLFVMDDVWNEDPKVW-DELKSLLWGGAKGSKILVTTRSNKVASI--MGTMRGTGGYKL----EGLPYESCLSLFMK 84 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~-~~l~~~~~~~~~gsrIivTtr~~~v~~~--~~~~~~~~~~~~----~~L~~~~a~~Lf~~ 84 (557)
.++..+||||..-...... +.+...+....++-..|||||+..-+.. +.... ...++ =.++.+|+-++|..
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~--~llEi~~~~Lrf~~eE~~~fl~~ 205 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRD--ELLEIGSEELRFDTEEAAAFLND 205 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehh--hHHhcChHhhcCChHHHHHHHHH
Confidence 3578999999854332222 3355555556678899999999743321 11000 02222 24789999999987
Q ss_pred HhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHH-HHHHHhhhccccccccCCchh-hHhhcccCCCh
Q 046626 85 CAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHY-WEYVRDNEIWKLEQKENDILP-ALKLSYDQLPP 162 (557)
Q Consensus 85 ~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~-w~~l~~~~~~~~~~~~~~i~~-~L~~sy~~L~~ 162 (557)
.. +.+-+ ..-++.+.+...|.+-|+..++=+++++.+.+. -..+ .+..+.+.+ ...--++.||+
T Consensus 206 ~~---~l~Ld---~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L--------sG~~~~l~dYL~eeVld~Lp~ 271 (894)
T COG2909 206 RG---SLPLD---AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL--------SGAASHLSDYLVEEVLDRLPP 271 (894)
T ss_pred cC---CCCCC---hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc--------cchHHHHHHHHHHHHHhcCCH
Confidence 65 22221 234578899999999999999998884433322 1111 111111222 23345788999
Q ss_pred hhHHHhhhhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCceeccCCCCCCCcceeEEEEcH
Q 046626 163 HLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQDFSNGMLPEGFEIFFFKMHD 242 (557)
Q Consensus 163 ~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~~~~~~~~~~~~~~~~~h~ 242 (557)
+.|..++-+|+++.- -..++....+ ++.|..++++|.+++++-..-+ +...+++.|.
T Consensus 272 ~l~~FLl~~svl~~f----~~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ld------d~~~WfryH~ 328 (894)
T COG2909 272 ELRDFLLQTSVLSRF----NDELCNALTG-------------EENGQAMLEELERRGLFLQRLD------DEGQWFRYHH 328 (894)
T ss_pred HHHHHHHHHHhHHHh----hHHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeec------CCCceeehhH
Confidence 999999999988532 1223322222 1236677999999998753322 2345899999
Q ss_pred HHHHHHHHHhc
Q 046626 243 LMHDLAQLVAK 253 (557)
Q Consensus 243 ~i~~l~~~~~~ 253 (557)
++.|+-+.--.
T Consensus 329 LFaeFL~~r~~ 339 (894)
T COG2909 329 LFAEFLRQRLQ 339 (894)
T ss_pred HHHHHHHhhhc
Confidence 99998765443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0091 Score=32.26 Aligned_cols=20 Identities=45% Similarity=0.866 Sum_probs=10.5
Q ss_pred ccCeeeccCCcCccccchhhh
Q 046626 344 HLRYLDLSDNDKIKKLPNSIC 364 (557)
Q Consensus 344 ~L~~L~l~~~~~~~~lp~~~~ 364 (557)
+|++|++++|. +..+|.+|+
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTT
T ss_pred CccEEECCCCc-CEeCChhhc
Confidence 35556666553 445555443
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.93 E-value=0.0028 Score=66.36 Aligned_cols=63 Identities=29% Similarity=0.326 Sum_probs=30.3
Q ss_pred hhcCCCcceEeeCCCC-hhh--hccccCCCCccCeeeccCC-cCccccc----hhhhcCCcCcEeecCCcC
Q 046626 316 ISKSQFLRVIDLSETA-IEV--LSREIGNLKHLRYLDLSDN-DKIKKLP----NSICELHSLQTLSLGGCR 378 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~-~~~--l~~~~~~l~~L~~L~l~~~-~~~~~lp----~~~~~l~~L~~L~l~~~~ 378 (557)
...+++|+.|.+..+. +.. +-......++|+.|+++++ ......+ .....+.+|+.|++++|.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 3345666666665542 222 3334455566666666652 1111111 123344566666666655
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.75 E-value=0.04 Score=50.66 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=84.7
Q ss_pred ccccCCCCCcEEEecCCCcc-chhHHHHHHhhcCCCcceEeeCCCChhhhc--------------cccCCCCccCeeecc
Q 046626 287 SLLSDLRRARTILFPINDEK-TNQSILTSCISKSQFLRVIDLSETAIEVLS--------------REIGNLKHLRYLDLS 351 (557)
Q Consensus 287 ~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--------------~~~~~l~~L~~L~l~ 351 (557)
..+.+|++++...++.|.++ .....+...+++...|..|.+++|.+..+. +...+-|.|++....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 44567788888888777665 233455666777788888888888765321 123345667777776
Q ss_pred CCcCccccchhh-----hcCCcCcEeecCCcCCCcc-----ccccccCCCCCcEEEcccccccc-----cccCcCCCCCC
Q 046626 352 DNDKIKKLPNSI-----CELHSLQTLSLGGCRELEE-----LPKDIRYLVSLRMFMVSTKQKSL-----LESGIGCLSSL 416 (557)
Q Consensus 352 ~~~~~~~lp~~~-----~~l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L 416 (557)
.|. +...|... ..-.+|+++.+..|..-.+ +-.++..+.+|++|++..|.++. +...++.++.|
T Consensus 166 rNR-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNR-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cch-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 663 55554332 2235777777777653221 11234567788888888776652 23345666677
Q ss_pred Ceeccccc
Q 046626 417 RFLMISDC 424 (557)
Q Consensus 417 ~~L~l~~c 424 (557)
++|.+.+|
T Consensus 245 rEL~lnDC 252 (388)
T COG5238 245 RELRLNDC 252 (388)
T ss_pred hhccccch
Confidence 88877776
No 76
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.54 E-value=0.0056 Score=56.21 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=54.5
Q ss_pred ceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhc--cccCCCCccC
Q 046626 269 RVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLS--REIGNLKHLR 346 (557)
Q Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~ 346 (557)
.++.+.+.++.+.+. ..-..|+.|.+|.++-|.+... ..+.+++.|++|+|..|.|..+- .-+.++++|+
T Consensus 20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL-----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL-----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc-----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 445556666666554 3345566666666665554321 12455666667777666666442 2355666666
Q ss_pred eeeccCCcCccccch-----hhhcCCcCcEee
Q 046626 347 YLDLSDNDKIKKLPN-----SICELHSLQTLS 373 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~-----~~~~l~~L~~L~ 373 (557)
.|.|..|...+.-+. .+..|++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666654444433 244566666665
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.0053 Score=56.36 Aligned_cols=81 Identities=28% Similarity=0.292 Sum_probs=55.2
Q ss_pred HhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccch--hhhcCCcCcEeecCCcCCCcccccc-----c
Q 046626 315 CISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPN--SICELHSLQTLSLGGCRELEELPKD-----I 387 (557)
Q Consensus 315 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~-----~ 387 (557)
...+|+.|+||.|+-|.|+.+ ..+..+++|+.|.|+.|. |..+.. -+.++++|++|-|..|+-...-+.. +
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 356788888888888888876 346777888888888874 555542 2557788888888777655444332 3
Q ss_pred cCCCCCcEEE
Q 046626 388 RYLVSLRMFM 397 (557)
Q Consensus 388 ~~l~~L~~L~ 397 (557)
.-|++|+.|+
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 3466666665
No 78
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.43 E-value=0.19 Score=46.64 Aligned_cols=102 Identities=20% Similarity=0.168 Sum_probs=52.5
Q ss_pred ceEEEEEeCCCCCC------hhhHHHHHHhcCC---CCCCcEEEEecCChHHHHHh-----cCCCCCCcEEcCCCChhhh
Q 046626 13 KRYLFVMDDVWNED------PKVWDELKSLLWG---GAKGSKILVTTRSNKVASIM-----GTMRGTGGYKLEGLPYESC 78 (557)
Q Consensus 13 kr~LlVlDdv~~~~------~~~~~~l~~~~~~---~~~gsrIivTtr~~~v~~~~-----~~~~~~~~~~~~~L~~~~a 78 (557)
++++||+|++..-. ......+...+.. ..+. .+|+++.+..+.... ........+.+++++.+++
T Consensus 118 ~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV-SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE-EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc-eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 45999999994322 1112233333322 3333 455555555444330 0111122599999999999
Q ss_pred HHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 79 LSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 79 ~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
++++...+-.. ... +.-.....+|...++|.|..|..
T Consensus 197 ~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99999865333 111 11234458999999999988754
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.40 E-value=0.025 Score=30.48 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=10.1
Q ss_pred cCcEeecCCcCCCcccccccc
Q 046626 368 SLQTLSLGGCRELEELPKDIR 388 (557)
Q Consensus 368 ~L~~L~l~~~~~~~~~p~~~~ 388 (557)
+|++||+++|. +..+|.+++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTT
T ss_pred CccEEECCCCc-CEeCChhhc
Confidence 35556666553 335555443
No 80
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.38 E-value=5.5 Score=40.37 Aligned_cols=222 Identities=11% Similarity=0.053 Sum_probs=110.9
Q ss_pred HHHHHHcC--CceEEEEEeCCCCCC----hhhHHHHHHhcCCCCCCcE--EEEecCChHHHHHhc----CCCCCCcEEcC
Q 046626 4 QIMRSCLN--GKRYLFVMDDVWNED----PKVWDELKSLLWGGAKGSK--ILVTTRSNKVASIMG----TMRGTGGYKLE 71 (557)
Q Consensus 4 ~~l~~~L~--~kr~LlVlDdv~~~~----~~~~~~l~~~~~~~~~gsr--IivTtr~~~v~~~~~----~~~~~~~~~~~ 71 (557)
+.+.+.++ ++.++||||+++.-. ...+..+...+.. .++++ ||.++...++..... ..-....+.+.
T Consensus 127 ~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~ 205 (394)
T PRK00411 127 DKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFP 205 (394)
T ss_pred HHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecC
Confidence 44555554 456899999995321 1223333333322 23444 566666544332211 00111257899
Q ss_pred CCChhhhHHHHHHHhccC---CCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhc----CCC---ChHHHHHHHhhhccc
Q 046626 72 GLPYESCLSLFMKCAFKE---GQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLY----GST---DEHYWEYVRDNEIWK 141 (557)
Q Consensus 72 ~L~~~~a~~Lf~~~a~~~---~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~----~~~---~~~~w~~l~~~~~~~ 141 (557)
+.+.++..+++...+-.. ..-.+..+..+++..+...+..+.|+.++-.+.. ... +.+......+..
T Consensus 206 py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~--- 282 (394)
T PRK00411 206 PYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS--- 282 (394)
T ss_pred CCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH---
Confidence 999999999998876322 1111233344444444445667788877754322 111 222222222211
Q ss_pred cccccCCchhhHhhcccCCChhhHHHhhhhccCCC--CcccChHHHHH--HHHHcCCccCCCCCCChHhHHHHHHHHHHh
Q 046626 142 LEQKENDILPALKLSYDQLPPHLKQCFAYCSIFPK--DYDFDSVLLIR--FWMAHGLLQSPNENEEPENIGMRYLNELLS 217 (557)
Q Consensus 142 ~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~fp~--~~~~~~~~li~--~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~ 217 (557)
-.....-.+..|+.+.|..+.-++...+ ...+...++.. ..+++.+ +..+........++..|.+
T Consensus 283 -------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~----~~~~~~~~~~~~~l~~L~~ 351 (394)
T PRK00411 283 -------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL----GYEPRTHTRFYEYINKLDM 351 (394)
T ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc----CCCcCcHHHHHHHHHHHHh
Confidence 1123344678899888887766653321 12234444332 1222211 1111123445678999999
Q ss_pred CCCceeccCCCCCCCcceeEEEEc
Q 046626 218 RSFFQDFSNGMLPEGFEIFFFKMH 241 (557)
Q Consensus 218 ~~ll~~~~~~~~~~~~~~~~~~~h 241 (557)
.+++.....+.+. .+..+.++.+
T Consensus 352 ~glI~~~~~~~g~-~g~~~~~~~~ 374 (394)
T PRK00411 352 LGIINTRYSGKGG-RGRTRLISLS 374 (394)
T ss_pred cCCeEEEEecCCC-CCCeEEEEec
Confidence 9999755322111 2444455544
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.23 E-value=0.086 Score=26.33 Aligned_cols=16 Identities=56% Similarity=0.899 Sum_probs=6.2
Q ss_pred ccCeeeccCCcCccccc
Q 046626 344 HLRYLDLSDNDKIKKLP 360 (557)
Q Consensus 344 ~L~~L~l~~~~~~~~lp 360 (557)
+|+.|++++|. +..+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555553 44443
No 82
>COG3903 Predicted ATPase [General function prediction only]
Probab=92.03 E-value=0.15 Score=49.98 Aligned_cols=203 Identities=19% Similarity=0.219 Sum_probs=125.3
Q ss_pred HHHHHHcCCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcCCCCCCcEEcCCCChh-hhHHHH
Q 046626 4 QIMRSCLNGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGTMRGTGGYKLEGLPYE-SCLSLF 82 (557)
Q Consensus 4 ~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~~~~~~~~~~~~L~~~-~a~~Lf 82 (557)
..+..+..++|.++|+||.-+-.. .-..+...+-.+.+.-.|+.|+|+.-.. .+...+.+..|+.- ++.++|
T Consensus 79 ~~~~~~~~~rr~llvldncehl~~-~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~~~~L~~~d~a~~lf 151 (414)
T COG3903 79 DTLVRRIGDRRALLVLDNCEHLLD-ACAALIVALLGACPRLAILATSREAILV------AGEVHRRVPSLSLFDEAIELF 151 (414)
T ss_pred HHHHHHHhhhhHHHHhcCcHHHHH-HHHHHHHHHHccchhhhhHHHhHhhhcc------cccccccCCccccCCchhHHH
Confidence 356777889999999999832211 1112223344445566788888865322 12336777777755 789999
Q ss_pred HHHhccCCCCC--ChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHHHHHHhhhc------cccccccCCchhhHh
Q 046626 83 MKCAFKEGQHK--NPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEI------WKLEQKENDILPALK 154 (557)
Q Consensus 83 ~~~a~~~~~~~--~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w~~l~~~~~------~~~~~~~~~i~~~L~ 154 (557)
...|....... .......+.+|.++.+|.|++|...++..+.-....--..+.+... ..-..........+.
T Consensus 152 ~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ 231 (414)
T COG3903 152 VCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLD 231 (414)
T ss_pred HHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhh
Confidence 88875544332 3455677899999999999999999988775433332222222110 000112456778899
Q ss_pred hcccCCChhhHHHhhhhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCce
Q 046626 155 LSYDQLPPHLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQ 222 (557)
Q Consensus 155 ~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~ 222 (557)
+||.-|..-++-.|--++.|...+... ...|.+.|---. ...-..+.-+..+++++++.
T Consensus 232 ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~ 290 (414)
T COG3903 232 WSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVV 290 (414)
T ss_pred hhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchh
Confidence 999999999999999999887766644 234454442110 01122344455667776654
No 83
>PF13173 AAA_14: AAA domain
Probab=91.74 E-value=0.5 Score=39.20 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHHHHcCCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhc-C-C-CCCCcEEcCCCChhhh
Q 046626 4 QIMRSCLNGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMG-T-M-RGTGGYKLEGLPYESC 78 (557)
Q Consensus 4 ~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~-~-~-~~~~~~~~~~L~~~~a 78 (557)
+.+.+....++.+++||+|. ...+|......+.+..+..+|++|+.+......-. . . .....++|.+|+..|.
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq--~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQ--YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHhhccCCcEEEEehhh--hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 34444444578899999994 44567776666666556789999999887763311 1 1 1122578888887663
No 84
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.65 E-value=1.8 Score=43.08 Aligned_cols=98 Identities=11% Similarity=0.070 Sum_probs=66.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-VASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+.+-++|+|++...+......+...+.....++.+|++|.+.+ +.... ......+++.+++.++..+++.....
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti--~SRc~~i~l~~l~~~~i~~~L~~~~~--- 214 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTI--RSRCRKLRLRPLAPEDVIDALAAAGP--- 214 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHh--hccceEEECCCCCHHHHHHHHHHhcc---
Confidence 4567899999976676667777777766555677777777653 33221 11234799999999999999987641
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
... . .. ...++..++|.|.....+
T Consensus 215 ~~~-~--~~-~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 215 DLP-D--DP-RAALAALAEGSVGRALRL 238 (365)
T ss_pred cCC-H--HH-HHHHHHHcCCCHHHHHHH
Confidence 111 1 11 267899999999865444
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.12 E-value=0.013 Score=52.45 Aligned_cols=82 Identities=22% Similarity=0.198 Sum_probs=39.6
Q ss_pred CCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEc
Q 046626 319 SQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMV 398 (557)
Q Consensus 319 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 398 (557)
++..++||++.+.+..+-..++.++.|..|+++.|. +..+|..++.+..+..+++..|. .+..|.+.+..+.++.+++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhh
Confidence 344445555555544444444445555555555442 44555555555555555444332 4444555555555555444
Q ss_pred cccc
Q 046626 399 STKQ 402 (557)
Q Consensus 399 ~~~~ 402 (557)
-++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 4443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=0.043 Score=48.22 Aligned_cols=20 Identities=20% Similarity=0.487 Sum_probs=10.8
Q ss_pred cCCCCCCCeecccccccccc
Q 046626 410 IGCLSSLRFLMISDCENLEY 429 (557)
Q Consensus 410 ~~~l~~L~~L~l~~c~~l~~ 429 (557)
+.++++++.|.+.+|..+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD 140 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDD 140 (221)
T ss_pred Hhccchhhhheeccccchhh
Confidence 44555555555655555443
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.51 E-value=1.8 Score=39.90 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=60.0
Q ss_pred EEEEEeCCCCCChh-hH-HHHHHhcCC-CCCCcEEEEecCCh---------HHHHHhcCCCCCCcEEcCCCChhhhHHHH
Q 046626 15 YLFVMDDVWNEDPK-VW-DELKSLLWG-GAKGSKILVTTRSN---------KVASIMGTMRGTGGYKLEGLPYESCLSLF 82 (557)
Q Consensus 15 ~LlVlDdv~~~~~~-~~-~~l~~~~~~-~~~gsrIivTtr~~---------~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf 82 (557)
-+|||||+..-... .| +.+...+.. ...+.+||+||+.. ++...+... ..+++.+++.++-..++
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~---~~i~l~~l~~~e~~~~l 168 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG---LVFQLPPLSDEEKIAAL 168 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC---eeEecCCCCHHHHHHHH
Confidence 38999999532211 23 334443322 12345788888753 222233222 27999999999999998
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHh
Q 046626 83 MKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSL 121 (557)
Q Consensus 83 ~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~ 121 (557)
...+-..+.... .+....+++.+.|.|..+..+-..
T Consensus 169 ~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 169 QSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 876543332222 344567777899988877666443
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.06 E-value=0.012 Score=52.61 Aligned_cols=88 Identities=22% Similarity=0.169 Sum_probs=76.8
Q ss_pred ccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCC
Q 046626 338 EIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLR 417 (557)
Q Consensus 338 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 417 (557)
.+......+.||++.|. +..+-..++.++.|..||++.|. ...+|.+++.+..++++++..|.....|.+++.++.++
T Consensus 37 ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 35666788999999885 77788889999999999999865 78899999999999999999999999999999999999
Q ss_pred eecccccccc
Q 046626 418 FLMISDCENL 427 (557)
Q Consensus 418 ~L~l~~c~~l 427 (557)
++++-+++..
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9998876533
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=89.71 E-value=1.7 Score=44.42 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=63.9
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEE--ecCChH--HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHh
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILV--TTRSNK--VASIMGTMRGTGGYKLEGLPYESCLSLFMKCA 86 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIiv--Ttr~~~--v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a 86 (557)
.+++.+|+||+++.-.....+.+...+.. |..++| ||.+.. +..... .....+++.+++.++.++++.+.+
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~--SR~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALL--SRAQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHh--ccceeeEeCCCCHHHHHHHHHHHH
Confidence 35788999999976665556666665543 444444 344322 111111 112379999999999999998865
Q ss_pred ccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHh
Q 046626 87 FKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSL 121 (557)
Q Consensus 87 ~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~ 121 (557)
.........--.+....+++.|+|.+..+..+-..
T Consensus 165 ~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 165 EDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33211100111345678899999998776555443
No 90
>PRK09087 hypothetical protein; Validated
Probab=89.38 E-value=3.2 Score=38.34 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=58.8
Q ss_pred EEEEEeCCCCC--ChhhHHHHHHhcCCCCCCcEEEEecCC---------hHHHHHhcCCCCCCcEEcCCCChhhhHHHHH
Q 046626 15 YLFVMDDVWNE--DPKVWDELKSLLWGGAKGSKILVTTRS---------NKVASIMGTMRGTGGYKLEGLPYESCLSLFM 83 (557)
Q Consensus 15 ~LlVlDdv~~~--~~~~~~~l~~~~~~~~~gsrIivTtr~---------~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~ 83 (557)
-+|++||+... +...+-.+...... .|..||+|++. .++...+.... .+++++++.++-.+++.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl---~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT---VVEIGEPDDALLSQVIF 163 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCc---eeecCCCCHHHHHHHHH
Confidence 37889999432 22222222222222 36678998873 45555555555 89999999999999999
Q ss_pred HHhccCCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 84 KCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 84 ~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
+.+-..+-..+ +++..-+++.+.|-.-++..
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 88854332222 34556677777766555543
No 91
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.23 E-value=2 Score=38.32 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+.+-++|+|++..-.....+.+...+....+.+.+|++|++. .+...... ....+++.+++.++..+.+....
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s--r~~~~~~~~~~~~~~~~~l~~~g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS--RCQVLPFPPLSEEALLQWLIRQG---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh--hcEEeeCCCCCHHHHHHHHHHcC----
Confidence 456689999996656666777888877665667777777653 33222211 12379999999999888887761
Q ss_pred CCCChhHHHHHHHHHHHhCCChh
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPL 113 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPl 113 (557)
.+ .+.+..+++.++|.|.
T Consensus 169 --i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred --CC---HHHHHHHHHHcCCCcc
Confidence 11 2457889999999875
No 92
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.83 E-value=4.1 Score=42.47 Aligned_cols=100 Identities=20% Similarity=0.254 Sum_probs=67.3
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEE-ecCChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILV-TTRSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIiv-Ttr~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++-++|+|+++.-....+..+...+....+.+++|+ ||+...+...... ....+++.+++.++..+.+...+-..
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS--RCQRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHh--cceEEEccCCCHHHHHHHHHHHHHHc
Confidence 35677899999987667778888888776655666655 4444454432211 12379999999999999999888554
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
+...+ .+....|++.++|-+.-+
T Consensus 204 gi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 204 NLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHH
Confidence 43322 233466888898866443
No 93
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.95 E-value=1 Score=37.21 Aligned_cols=100 Identities=13% Similarity=0.282 Sum_probs=33.8
Q ss_pred hhcCCCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccc-cccCCCC
Q 046626 316 ISKSQFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPK-DIRYLVS 392 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~ 392 (557)
|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+.++ +..++. .+..+.+|+.+.+.+ ....++. .+...++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccccc
Confidence 33444455555543 2333322 2444445555555442 333332 233444555555543 1222222 2333555
Q ss_pred CcEEEccccccccc-ccCcCCCCCCCeeccc
Q 046626 393 LRMFMVSTKQKSLL-ESGIGCLSSLRFLMIS 422 (557)
Q Consensus 393 L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~ 422 (557)
|+.+.+..+ +..+ ...+... +|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 555555443 2222 2234443 55555443
No 94
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=87.87 E-value=2.3 Score=45.80 Aligned_cols=115 Identities=24% Similarity=0.209 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEE--ecCChHH-HHHhcCCCCCCcEEcCCCChhhh
Q 046626 2 LQQIMRSCLNGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILV--TTRSNKV-ASIMGTMRGTGGYKLEGLPYESC 78 (557)
Q Consensus 2 l~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIiv--Ttr~~~v-~~~~~~~~~~~~~~~~~L~~~~a 78 (557)
.++.+.+.++.+++.++-|+.|..+...|+.+...+..+.+...|++ ||++... ...... ....+.+.+++.++.
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi 358 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHH
Confidence 46788888999999999888887766678888877777766665666 6665432 111111 112578889999999
Q ss_pred HHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHh
Q 046626 79 LSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSL 121 (557)
Q Consensus 79 ~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~ 121 (557)
++++.+.+-..+.... .+....+++++..-+.|+..++.+
T Consensus 359 ~~Il~~~a~~~~v~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 359 ALIVLNAAEKINVHLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9999987743322222 234455555555446666655544
No 95
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.57 E-value=4.9 Score=39.26 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHH-HHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVA-SIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~-~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++=++|+|++...+...+..+...+.+..+++.+|++|.+.+.. ... ......+++..++.++..+...... .
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI--~SRc~~~~~~~~~~~~~~~~l~~~~-~-- 166 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI--KSRCQIYKLNRLSKEEIEKFISYKY-N-- 166 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH--HhhceeeeCCCcCHHHHHHHHHHHh-c--
Confidence 455577788876566677888999998877899999988765432 111 1112379999999999877775543 1
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVR 116 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~ 116 (557)
... ...+..++..++|.|..+.
T Consensus 167 -~~~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 167 -DIK---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred -CCC---HHHHHHHHHHcCCCHHHHH
Confidence 111 2235678899999886543
No 96
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.96 E-value=6.1 Score=39.52 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=65.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-....++.+...+....+..++|++|.+. .+..... .....+++.+++.++..+.+...+-..+
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~--SRc~~~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL--SRCLQFKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH--hhceEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 455699999996555556777777776655567777777653 3332211 1123799999999998888887664433
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVR 116 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~ 116 (557)
...+ .+.+..+++.++|.|..+.
T Consensus 196 ~~i~---~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 196 IDTD---EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2222 2345678889999876443
No 97
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.54 E-value=0.11 Score=45.77 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=36.9
Q ss_pred CCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccccc-CCccCCCCCCcceeeecCCC
Q 046626 464 RLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMA-LPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 464 ~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~-lp~~l~~l~~L~~L~l~~c~ 526 (557)
+..++.|.+.+|..+...--....+..++|+.|+|++|+..+. --.++..+++|+.|.+.+.|
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 3445555555555443222111114567888888888876553 23356678888888888755
No 98
>PRK08727 hypothetical protein; Validated
Probab=86.35 E-value=5.4 Score=37.04 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=56.8
Q ss_pred EEEEEeCCCCCC-hhhHHH-HHHhcCC-CCCCcEEEEecCC---------hHHHHHhcCCCCCCcEEcCCCChhhhHHHH
Q 046626 15 YLFVMDDVWNED-PKVWDE-LKSLLWG-GAKGSKILVTTRS---------NKVASIMGTMRGTGGYKLEGLPYESCLSLF 82 (557)
Q Consensus 15 ~LlVlDdv~~~~-~~~~~~-l~~~~~~-~~~gsrIivTtr~---------~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf 82 (557)
-+|||||+.... ...|+. +...+.. ..+|..||+||+. .++...+.... .+++.+++.++-.+++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~---~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCI---RIGLPVLDDVARAAVL 171 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCc---eEEecCCCHHHHHHHH
Confidence 489999994221 122332 3333221 1246679999985 23333333333 7999999999999999
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHhCCChhHH
Q 046626 83 MKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 83 ~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
.+.+...+-..+ .+...-+++.+.|-.-++
T Consensus 172 ~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 172 RERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 988765433222 344566777777654433
No 99
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.92 E-value=6.1 Score=41.33 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=66.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|+++......+..+...+....+...+|++|.. ..+...... ....|++..++.++..+.+...+-..+
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS--RTQHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45668999999766666777787777665555565555543 333222211 123799999999999999998875544
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
...+ .+....+++.++|.+--+
T Consensus 193 i~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 193 REAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHH
Confidence 3322 345678899999987644
No 100
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.31 E-value=2.8 Score=34.42 Aligned_cols=103 Identities=15% Similarity=0.304 Sum_probs=48.1
Q ss_pred cccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccch-hhhc
Q 046626 288 LLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLPN-SICE 365 (557)
Q Consensus 288 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~ 365 (557)
.+.++.+++.+.+... . ..+....|.++..|+.+.+..+ +..++. .+.++++|+.+.+.++ +..++. .+..
T Consensus 7 ~F~~~~~l~~i~~~~~-~---~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~ 79 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-I---KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSN 79 (129)
T ss_dssp TTTT-TT--EEEETST------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT
T ss_pred HHhCCCCCCEEEECCC-e---eEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccc
Confidence 4556667777776521 1 1233344666777777777764 554433 4566667777777642 444443 3445
Q ss_pred CCcCcEeecCCcCCCccccc-cccCCCCCcEEEccc
Q 046626 366 LHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVST 400 (557)
Q Consensus 366 l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~ 400 (557)
+.+|+.+++..+ +..++. .+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 777877777542 334443 33443 666666543
No 101
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=84.66 E-value=8.1 Score=38.32 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEec-CChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTT-RSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTt-r~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-+......+...+........+|++| +-..+..... .....+++.+++.++..+.+........
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIr--SRc~~i~l~pl~~~~~~~~L~~~~~~~~ 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIR--SRCQPISLKPLDDDELKKALSHLGSSQG 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHH--hhccEEEecCCCHHHHHHHHHHhhcccC
Confidence 456689999997666666666777776544455544444 4433432221 1224799999999999999987432111
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTLG 119 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ig 119 (557)
.+ ...+..+++.++|.|.....+.
T Consensus 218 --~~---~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 --SD---GEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred --CC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 11 2345788999999998655443
No 102
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.54 E-value=8.3 Score=35.84 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=58.0
Q ss_pred EEEEeCCCCCC-hhhHHH-HHHhcCCC-CCC-cEEEEecCCh---------HHHHHhcCCCCCCcEEcCCCChhhhHHHH
Q 046626 16 LFVMDDVWNED-PKVWDE-LKSLLWGG-AKG-SKILVTTRSN---------KVASIMGTMRGTGGYKLEGLPYESCLSLF 82 (557)
Q Consensus 16 LlVlDdv~~~~-~~~~~~-l~~~~~~~-~~g-srIivTtr~~---------~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf 82 (557)
++++||+.... ...|+. +...+... ..| .++|+||+.. ++...+.... +++++++++++-.+++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~---~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ---IYKLQPLSDEEKLQAL 176 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc---eeeecCCCHHHHHHHH
Confidence 78999994321 234543 32333211 123 3688988753 4555565555 8999999999999998
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHhCCChhHHH
Q 046626 83 MKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVR 116 (557)
Q Consensus 83 ~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~ 116 (557)
.+.|...+-..+ +++..-+++.+.|-.-++.
T Consensus 177 ~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 177 QLRARLRGFELP---EDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHH
Confidence 876654332222 4556677787877554443
No 103
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=84.15 E-value=4.1 Score=37.44 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=57.3
Q ss_pred HHHHcCCceEEEEEeCCCCCC-hhhHHH-HHHhcCC-CCCCcEEEEecCC---------hHHHHHhcCCCCCCcEEcCCC
Q 046626 6 MRSCLNGKRYLFVMDDVWNED-PKVWDE-LKSLLWG-GAKGSKILVTTRS---------NKVASIMGTMRGTGGYKLEGL 73 (557)
Q Consensus 6 l~~~L~~kr~LlVlDdv~~~~-~~~~~~-l~~~~~~-~~~gsrIivTtr~---------~~v~~~~~~~~~~~~~~~~~L 73 (557)
+++.+++ -=+|++|||..-. ...|+. +...+.. ...|-+||+|++. .++...+...- .++++.+
T Consensus 91 ~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl---~~~l~~p 166 (219)
T PF00308_consen 91 FKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGL---VVELQPP 166 (219)
T ss_dssp HHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSE---EEEE---
T ss_pred hhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcc---hhhcCCC
Confidence 3344443 2377899995322 223332 2222221 1246689999965 34444555544 8999999
Q ss_pred ChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHH
Q 046626 74 PYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVR 116 (557)
Q Consensus 74 ~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~ 116 (557)
+.++-.+++.+.|-..+-..+ ++++.-+++.+.+..-.+.
T Consensus 167 d~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 167 DDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp -HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHH
Confidence 999999999998865544432 4455667777766544443
No 104
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=84.04 E-value=10 Score=37.36 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=61.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCCC
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQ 91 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~ 91 (557)
.+-+||+||+..-.......+...+....+.+++|+||... .+...... ....+++.+++.++..+.+...+-..+.
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~ 202 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRS--RCLPLFFRAPTDDELVDVLESIAEAEGV 202 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcC--CceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 34589999995444444455665554444557788777543 22221111 1236888999999988888887644333
Q ss_pred CCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 92 HKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 92 ~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
..+ .+....+++.++|.+-.+..
T Consensus 203 ~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 203 DYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 322 34567788888887655443
No 105
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=83.80 E-value=8.4 Score=41.87 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=67.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-VASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
++.-++|||++..-+...+..+...+..-.+..++|++|++.+ +... .......|+++.++.++..+.+.+.+-..+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T--IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT--VLSRCLQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccch--hhhheEEEecCCcCHHHHHHHHHHHHHHcC
Confidence 3455888999976666667777777766556778888777753 3211 111123799999999999999888764433
Q ss_pred CCCChhHHHHHHHHHHHhCCCh-hHHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIP-LAVRTLG 119 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glP-lal~~ig 119 (557)
...+ .+..+.|++.++|-. .|+..+-
T Consensus 196 I~id---~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 196 IAFE---PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2222 345578889998854 4554433
No 106
>COG3899 Predicted ATPase [General function prediction only]
Probab=83.71 E-value=11 Score=42.22 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=96.5
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCC----CCcEEEEecCChHHHHHh-cCCCCCCcEEcCCCChhhhHHHHHHH
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGA----KGSKILVTTRSNKVASIM-GTMRGTGGYKLEGLPYESCLSLFMKC 85 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~----~gsrIivTtr~~~v~~~~-~~~~~~~~~~~~~L~~~~a~~Lf~~~ 85 (557)
+.|+..+|+||+.-.|....+-+......-. ....|..+.......... ........+.+.+|+..+.-.+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 4569999999993344333333332221111 122333333333221111 11111237999999999999888776
Q ss_pred hccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCC------CChHHHHHHHhhhccccccccCCchhhHhhcccC
Q 046626 86 AFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGS------TDEHYWEYVRDNEIWKLEQKENDILPALKLSYDQ 159 (557)
Q Consensus 86 a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~------~~~~~w~~l~~~~~~~~~~~~~~i~~~L~~sy~~ 159 (557)
..... ..-.+....|.++..|.|+=+.-+-..+... .+...|..=. ........ .+.+...+..-.+.
T Consensus 232 l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~-~~i~~~~~-~~~vv~~l~~rl~k 305 (849)
T COG3899 232 LGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSI-ASLGILAT-TDAVVEFLAARLQK 305 (849)
T ss_pred hCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccH-HhcCCchh-hHHHHHHHHHHHhc
Confidence 63222 2335667899999999999999998888863 2333332100 00111111 12255568888999
Q ss_pred CChhhHHHhhhhccCCCCcc
Q 046626 160 LPPHLKQCFAYCSIFPKDYD 179 (557)
Q Consensus 160 L~~~~k~~fl~~a~fp~~~~ 179 (557)
||+..|...-..||+...+.
T Consensus 306 L~~~t~~Vl~~AA~iG~~F~ 325 (849)
T COG3899 306 LPGTTREVLKAAACIGNRFD 325 (849)
T ss_pred CCHHHHHHHHHHHHhCccCC
Confidence 99999999999999975554
No 107
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=83.30 E-value=8.3 Score=38.92 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=62.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++...+......+...+....++..+|++|.+. .+..... .....+.+..++.++..+.+.... +
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIr--SRc~~i~f~~~~~~~i~~~L~~~~---~ 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIR--SRCRHVALRTPSVEAVAEVLVRRD---G 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHH--hhCeEEECCCCCHHHHHHHHHHhc---C
Confidence 445578889996666656666777776655677777777664 3332211 112379999999999988887432 1
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVR 116 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~ 116 (557)
. . .+.+..++..++|.|....
T Consensus 191 ~--~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 191 V--D---PETARRAARASQGHIGRAR 211 (394)
T ss_pred C--C---HHHHHHHHHHcCCCHHHHH
Confidence 1 1 2446788999999886543
No 108
>PRK05642 DNA replication initiation factor; Validated
Probab=83.17 E-value=9.4 Score=35.45 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=58.3
Q ss_pred EEEEeCCCCC-ChhhHHH-HHHhcCC-CCCCcEEEEecCCh---------HHHHHhcCCCCCCcEEcCCCChhhhHHHHH
Q 046626 16 LFVMDDVWNE-DPKVWDE-LKSLLWG-GAKGSKILVTTRSN---------KVASIMGTMRGTGGYKLEGLPYESCLSLFM 83 (557)
Q Consensus 16 LlVlDdv~~~-~~~~~~~-l~~~~~~-~~~gsrIivTtr~~---------~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~ 83 (557)
++|+||+... ....|+. +...+.. ...|.+||+||+.. ++...+.... .++++.++.++-.++..
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl---~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLAL---VFQMRGLSDEDKLRALQ 176 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCe---eeecCCCCHHHHHHHHH
Confidence 6789999422 1234543 4444422 12466788888753 2222333333 79999999999999998
Q ss_pred HHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 84 KCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 84 ~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
.++...+-..+ .++..-+++.+.|-.-++..+
T Consensus 177 ~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 177 LRASRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 77654332222 456677788887765544433
No 109
>PRK06620 hypothetical protein; Validated
Probab=83.05 E-value=15 Score=33.46 Aligned_cols=90 Identities=14% Similarity=0.059 Sum_probs=52.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhcC-CCCCCcEEEEecCCh-------HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHH
Q 046626 14 RYLFVMDDVWNEDPKVWDELKSLLW-GGAKGSKILVTTRSN-------KVASIMGTMRGTGGYKLEGLPYESCLSLFMKC 85 (557)
Q Consensus 14 r~LlVlDdv~~~~~~~~~~l~~~~~-~~~~gsrIivTtr~~-------~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~ 85 (557)
.-++++|||..-+. ..+...+. ....|..||+|++.. ++...+.... .++++.+++++-..+..+.
T Consensus 86 ~d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl---~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 86 YNAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVL---SILLNSPDDELIKILIFKH 159 (214)
T ss_pred CCEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCc---eEeeCCCCHHHHHHHHHHH
Confidence 34788999942111 12222221 113466899998753 3344444444 7999999999988888777
Q ss_pred hccCCCCCChhHHHHHHHHHHHhCCCh
Q 046626 86 AFKEGQHKNPNLVKIGEEIVKKSGGIP 112 (557)
Q Consensus 86 a~~~~~~~~~~~~~l~~~i~~~c~glP 112 (557)
+...+-... +++..-+++.+.|--
T Consensus 160 ~~~~~l~l~---~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 160 FSISSVTIS---RQIIDFLLVNLPREY 183 (214)
T ss_pred HHHcCCCCC---HHHHHHHHHHccCCH
Confidence 643222212 345566677776643
No 110
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.71 E-value=0.8 Score=25.64 Aligned_cols=19 Identities=47% Similarity=0.746 Sum_probs=11.2
Q ss_pred CccCeeeccCCcCccccchh
Q 046626 343 KHLRYLDLSDNDKIKKLPNS 362 (557)
Q Consensus 343 ~~L~~L~l~~~~~~~~lp~~ 362 (557)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666663 6666654
No 111
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.71 E-value=0.8 Score=25.64 Aligned_cols=19 Identities=47% Similarity=0.746 Sum_probs=11.2
Q ss_pred CccCeeeccCCcCccccchh
Q 046626 343 KHLRYLDLSDNDKIKKLPNS 362 (557)
Q Consensus 343 ~~L~~L~l~~~~~~~~lp~~ 362 (557)
++|++|+|++|. +..+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 456666666663 6666654
No 112
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=81.81 E-value=19 Score=35.82 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-VASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-.......+...+....+.+.+|++|.+.+ +...... ....++..+++.++..+.+...+-..+
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g 193 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILS--RCQRFDFKRIPLEDIVERLKKILDKEG 193 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4455889999954444556667777755555677777765543 3322111 112688889999998888887765443
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTLG 119 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ig 119 (557)
...+ .+.+..+++.++|.|..+...-
T Consensus 194 ~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 194 IKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 3322 3456778889999886654443
No 113
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.79 E-value=15 Score=39.35 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=66.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-VASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|+|..-+......+...+.....+.++|++|.+.. +..... .....+++++++.++..+.+...+-+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl--SRCq~feFkpLs~eEI~k~L~~Il~kEg 194 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI--SRCLQFTLRPLAVDEITKHLGAILEKEQ 194 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH--HhhheeeccCCCHHHHHHHHHHHHHHcC
Confidence 5666899999965555666777777766555677887776642 221110 1123799999999999888887765443
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
...+ .+....|++.++|-+..+..
T Consensus 195 I~id---~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 195 IAAD---QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 3322 33457788889987654433
No 114
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=80.79 E-value=16 Score=39.44 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=62.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHH-hcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASI-MGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~-~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
+++-++|||++..-+......+...+.......++|++|.+. .+... .+- ...|++..++.++..+.+.+.+-+.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR---C~~f~f~~Ls~eeI~~~L~~Il~kE 194 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR---CLQFVLRNMTAQQVADHLAHVLDSE 194 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH---HhhhhcCCCCHHHHHHHHHHHHHHc
Confidence 556689999996555545556666665544456777776553 22211 111 1258888999999988888776544
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAVR 116 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal~ 116 (557)
+...+ ......|++.++|-+.-+.
T Consensus 195 gi~id---~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 195 KIAYE---PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred CCCcC---HHHHHHHHHHhCCCHHHHH
Confidence 33322 3355788899988774443
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.99 E-value=16 Score=39.03 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=68.9
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++-++|||++..-.......+...+........+|++|.+ ..+..... .....+++..++.++..+.+...+...
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~--SRcq~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV--SRCQHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH--hhhhccccCCCCHHHHHHHHHHHHHHc
Confidence 356678999999665556667777777554445566665655 34432211 112268999999999998888876544
Q ss_pred CCCCChhHHHHHHHHHHHhCCCh-hHHHHHHHhh
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIP-LAVRTLGSLL 122 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glP-lal~~ig~~L 122 (557)
+...+ .+.+..+++.++|-+ .|+..+...+
T Consensus 195 gi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 195 GVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33222 345677888888854 6777766544
No 116
>PLN03025 replication factor C subunit; Provisional
Probab=79.59 E-value=30 Score=33.82 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=61.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
++.-++|||++..-.......+...+......+++|+++... .+...... ....+++..+++++..+.+...+-..+
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S--Rc~~i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS--RCAIVRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH--hhhcccCCCCCHHHHHHHHHHHHHHcC
Confidence 356689999996555444455655554444567777776542 22111100 012689999999999988888775443
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
...+ .+....+++.++|-...+
T Consensus 176 i~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 176 VPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHH
Confidence 3322 344578888898865433
No 117
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=78.78 E-value=19 Score=33.20 Aligned_cols=103 Identities=19% Similarity=0.133 Sum_probs=58.1
Q ss_pred EEEEEeCCCCCChhhHHHHHHhcCCC-CCCc-EEEEecCChHHH--------HHhcCCCCCCcEEcCCCChhhhHHHHHH
Q 046626 15 YLFVMDDVWNEDPKVWDELKSLLWGG-AKGS-KILVTTRSNKVA--------SIMGTMRGTGGYKLEGLPYESCLSLFMK 84 (557)
Q Consensus 15 ~LlVlDdv~~~~~~~~~~l~~~~~~~-~~gs-rIivTtr~~~v~--------~~~~~~~~~~~~~~~~L~~~~a~~Lf~~ 84 (557)
-++|+||+..-+...-+.+...+... ..|. .||+|++..... ..+... ..+++.++++++-..++..
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~---~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWG---LVYELKPLSDADKIAALKA 168 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC---eEEEecCCCHHHHHHHHHH
Confidence 47899999433322223344444221 1244 466666643221 122222 2789999998876666665
Q ss_pred HhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhc
Q 046626 85 CAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLY 123 (557)
Q Consensus 85 ~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~ 123 (557)
.+-..+.... .+....+++.+.|.+..+..+-..+.
T Consensus 169 ~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 169 AAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 5433222222 34567777889999888777666554
No 118
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.65 E-value=15 Score=39.32 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=65.6
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.++.-++|||++..-+...+..+...+..-....++|++|.+ ..+..... .....|++..++.++..+.+.+.+-..
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr--SRCq~f~f~~ls~eei~~~L~~Il~~E 199 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL--SRCLQFNLKQMPPGHIVSHLDAILGEE 199 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH--HHHHhcccCCCChHHHHHHHHHHHHHc
Confidence 345668999999766666777777777655455665555554 44442211 012269999999999998888776433
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
+...+ .+....|++.++|.|.....
T Consensus 200 gi~~d---~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 200 GIAHE---VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 32222 23447789999998864443
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=76.64 E-value=16 Score=37.75 Aligned_cols=104 Identities=9% Similarity=0.028 Sum_probs=63.5
Q ss_pred EEEEEeCCCCCC-hhhH-HHHHHhcCC-CCCCcEEEEecCC---------hHHHHHhcCCCCCCcEEcCCCChhhhHHHH
Q 046626 15 YLFVMDDVWNED-PKVW-DELKSLLWG-GAKGSKILVTTRS---------NKVASIMGTMRGTGGYKLEGLPYESCLSLF 82 (557)
Q Consensus 15 ~LlVlDdv~~~~-~~~~-~~l~~~~~~-~~~gsrIivTtr~---------~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf 82 (557)
-+|||||+.... ...+ +.+...+.. ...|..||+|+.. +++...+...- .+++++++.++-.+++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl---~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGL---SIAIQKLDNKTATAII 284 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCc---eeccCCcCHHHHHHHH
Confidence 488999994322 1122 334433321 1235568888654 23333444443 7889999999999999
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhh
Q 046626 83 MKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLL 122 (557)
Q Consensus 83 ~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L 122 (557)
.+.+-..+... .--.+...-|++.+.|.|-.+..+-..+
T Consensus 285 ~~~~~~~gl~~-~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 285 KKEIKNQNIKQ-EVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHhcCCCC-CCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 98885433210 1224567889999999988776655433
No 120
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=76.09 E-value=1.7 Score=24.33 Aligned_cols=16 Identities=25% Similarity=0.648 Sum_probs=11.2
Q ss_pred CCCcceeeecCCCccc
Q 046626 514 LEALETLAIGGCPALS 529 (557)
Q Consensus 514 l~~L~~L~l~~c~~l~ 529 (557)
+++|+.|+|++|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3677777888777654
No 121
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=75.82 E-value=18 Score=35.54 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=62.5
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCCC
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQ 91 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~ 91 (557)
.|+ +|+|++...+......+...+..-..++.+|++|.+. .+..... .....+++.+++.+++.+.+.... . .
T Consensus 107 ~kv-~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~--SRc~~~~~~~~~~~~~~~~L~~~~-~--~ 180 (328)
T PRK05707 107 RKV-VLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIK--SRCQQQACPLPSNEESLQWLQQAL-P--E 180 (328)
T ss_pred CeE-EEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHH--hhceeeeCCCcCHHHHHHHHHHhc-c--c
Confidence 444 4679997667666777777776655677788887775 3332211 112369999999999998887653 1 1
Q ss_pred CCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 92 HKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 92 ~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
. . .+-+..++..++|-|.....+
T Consensus 181 ~-~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 S-D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred C-C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 1 223456788999999755443
No 122
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.70 E-value=20 Score=36.37 Aligned_cols=101 Identities=13% Similarity=0.199 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecC-ChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTR-SNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr-~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-....+..+...+....+.+.+|++|. ...+...... ....++...++.++..+.+...+-..+
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEG 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcC
Confidence 4566889999965566677888888776666777666554 3444322110 012688999999988887777653322
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
...+ .+.+..++..++|.+.-+..
T Consensus 204 ~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 204 ISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2222 34567888999997754433
No 123
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=75.40 E-value=30 Score=33.66 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=61.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCCC
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQ 91 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~ 91 (557)
.+-++++|++..-.......+...+....+.+++|+++... .+...... ....++..+++.++..+.+...+-..+.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~~~ei~~~l~~~~~~~~~ 179 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLKKEAVAERLRYIAENEGI 179 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH--HhheeeeCCCCHHHHHHHHHHHHHHcCC
Confidence 45689999995444444556666665555567777776432 22111100 0126889999999998888887755443
Q ss_pred CCChhHHHHHHHHHHHhCCChhHHH
Q 046626 92 HKNPNLVKIGEEIVKKSGGIPLAVR 116 (557)
Q Consensus 92 ~~~~~~~~l~~~i~~~c~glPlal~ 116 (557)
..+ .+....+++.++|.+.-+.
T Consensus 180 ~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 180 EIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHH
Confidence 322 3345777888988766543
No 124
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.14 E-value=20 Score=39.97 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=68.0
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++-++|||++..-....+..++..+.......++|++|.+ ..+...... ....|++++++.++..+.+.+.+-..
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHc
Confidence 356779999999766666777777777665556666666655 344322111 12379999999999998888766432
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
+... -.+....|++.++|.|..+..+
T Consensus 195 gI~~---edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 195 QLPF---EAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 2345678999999988644443
No 125
>PRK04195 replication factor C large subunit; Provisional
Probab=72.18 E-value=90 Score=32.62 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=87.0
Q ss_pred ceEEEEEeCCCCCCh----hhHHHHHHhcCCCCCCcEEEEecCChH-HHH-HhcCCCCCCcEEcCCCChhhhHHHHHHHh
Q 046626 13 KRYLFVMDDVWNEDP----KVWDELKSLLWGGAKGSKILVTTRSNK-VAS-IMGTMRGTGGYKLEGLPYESCLSLFMKCA 86 (557)
Q Consensus 13 kr~LlVlDdv~~~~~----~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~-~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a 86 (557)
++-+||+|++..-.. ..+..+...+... +..||+|+.+.. ... ... .....+++..++.++....+...+
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHH
Confidence 677999999954321 2355565555432 345666664421 111 111 112378999999999988888877
Q ss_pred ccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCC---ChHHHHHHHhhhccccccccCCchhhHhhccc-CCCh
Q 046626 87 FKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGST---DEHYWEYVRDNEIWKLEQKENDILPALKLSYD-QLPP 162 (557)
Q Consensus 87 ~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~---~~~~w~~l~~~~~~~~~~~~~~i~~~L~~sy~-~L~~ 162 (557)
...+...+ .+....|++.++|-...+...-..+.... +...-+.+.. ......++..+..-+. .-..
T Consensus 174 ~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------~d~~~~if~~l~~i~~~k~~~ 244 (482)
T PRK04195 174 RKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------RDREESIFDALDAVFKARNAD 244 (482)
T ss_pred HHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------CCCCCCHHHHHHHHHCCCCHH
Confidence 55443333 34568888999997766654444444321 1222211111 1123455665554443 2222
Q ss_pred hhHHHhhhhccCCCCcccChHHHHHHHHHcCCccC
Q 046626 163 HLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQS 197 (557)
Q Consensus 163 ~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~ 197 (557)
.....+.. ..++. ..+-.|+.+.+...
T Consensus 245 ~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 245 QALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred HHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 23332222 12333 34568998888664
No 126
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.89 E-value=35 Score=36.10 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++-++|+|++..-+...++.+...+.......++|++|.+ ..+.... ......+++..++.++..+.+...+-..
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI--~SRc~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTI--LSRCIQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhH--HHheeeEEeCCCCHHHHHHHHHHHHHHc
Confidence 356679999999766666777788888766556666655544 3343221 1112379999999999887777655333
Q ss_pred CCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPL-AVRTL 118 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPl-al~~i 118 (557)
+...+ ......+++.++|-+. |+..+
T Consensus 195 gi~~e---~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 195 NINSD---EQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22222 3344678888888654 44444
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=71.76 E-value=34 Score=36.01 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=66.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-+......+...+....+.+++|++|.+. .+..... .....++..+++.++..+.+...+-..+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~--SRc~~~~F~~Ls~~ei~~~L~~Il~~EG 193 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL--SRTQHFRFKQIPQNSIISHLKTILEKEG 193 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH--hhceeEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456688999997666666777777776655667777777663 2221111 1123799999999998888877664443
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
...+ .+.+..+++.++|.+.-+..+
T Consensus 194 i~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 194 VSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 3322 345678899999988554443
No 128
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.75 E-value=28 Score=35.93 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.++.-++|+|++..-+...+..+...+.........|.+|.+ ..+...... ....|...+++.++..+.+.+.+-..
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS--RCQDFIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh--hhheeeecCCCHHHHHHHHHHHHHHc
Confidence 356668999999766666777777777554334554544444 444322111 12269999999999888888776543
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLA 114 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPla 114 (557)
+...+ .+....|++.++|.+.-
T Consensus 197 gi~~e---~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 197 NVQYD---QEGLFWIAKKGDGSVRD 218 (484)
T ss_pred CCCCC---HHHHHHHHHHcCChHHH
Confidence 33222 34568899999998743
No 129
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=71.59 E-value=1.1e+02 Score=30.39 Aligned_cols=209 Identities=12% Similarity=0.035 Sum_probs=102.2
Q ss_pred HHHHHcC--CceEEEEEeCCCCCC---hhhHHHHHHhc-CCCCC--CcEEEEecCChHHHHHh----cCCCCCCcEEcCC
Q 046626 5 IMRSCLN--GKRYLFVMDDVWNED---PKVWDELKSLL-WGGAK--GSKILVTTRSNKVASIM----GTMRGTGGYKLEG 72 (557)
Q Consensus 5 ~l~~~L~--~kr~LlVlDdv~~~~---~~~~~~l~~~~-~~~~~--gsrIivTtr~~~v~~~~----~~~~~~~~~~~~~ 72 (557)
.+.+.+. +++++||||+++.-. ......+.... ....+ .-.+|.+|...+..... ...-....+.+.+
T Consensus 119 ~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p 198 (365)
T TIGR02928 119 RLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPP 198 (365)
T ss_pred HHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCC
Confidence 3444443 568899999995331 11111222110 11112 22445555444322111 1111012588999
Q ss_pred CChhhhHHHHHHHhccC--CCCCChhHHHHHHHHHHHhCCChhH-HHHHHHhhc----CC---CChHHHHHHHhhhcccc
Q 046626 73 LPYESCLSLFMKCAFKE--GQHKNPNLVKIGEEIVKKSGGIPLA-VRTLGSLLY----GS---TDEHYWEYVRDNEIWKL 142 (557)
Q Consensus 73 L~~~~a~~Lf~~~a~~~--~~~~~~~~~~l~~~i~~~c~glPla-l~~ig~~L~----~~---~~~~~w~~l~~~~~~~~ 142 (557)
.+.++..+++..++-.. ....+++..+.+.+++....|.|.. +.++-.+.. .. -+.+..+...+..
T Consensus 199 ~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~---- 274 (365)
T TIGR02928 199 YDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI---- 274 (365)
T ss_pred CCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----
Confidence 99999999998886321 1122345555666677777788744 333332221 11 1111111111110
Q ss_pred ccccCCchhhHhhcccCCChhhHHHhhhhccC--CCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCC
Q 046626 143 EQKENDILPALKLSYDQLPPHLKQCFAYCSIF--PKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSF 220 (557)
Q Consensus 143 ~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~f--p~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~l 220 (557)
-.....-.+..|+.+.+..+..++.. .++..+...++...+... ....+..+........++..|...++
T Consensus 275 ------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~~~~~~~~~~~~l~~l~~~gl 346 (365)
T TIGR02928 275 ------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV--CEDIGVDPLTQRRISDLLNELDMLGL 346 (365)
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHhcCCCCCcHHHHHHHHHHHHhcCC
Confidence 01233445678888888766555422 123335555555422210 01111123345667788899999999
Q ss_pred ceecc
Q 046626 221 FQDFS 225 (557)
Q Consensus 221 l~~~~ 225 (557)
+....
T Consensus 347 i~~~~ 351 (365)
T TIGR02928 347 VEAEE 351 (365)
T ss_pred eEEEE
Confidence 97653
No 130
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=71.46 E-value=15 Score=35.14 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=63.2
Q ss_pred EEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCCCCCCh
Q 046626 16 LFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQHKNP 95 (557)
Q Consensus 16 LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~~~~~ 95 (557)
.+|||++.....+.|..+.........-+|-|..+..-.....--+. ...-|+-..|.+++..+-+...|-+.+...+
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S-RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d- 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS-RCQKFRFKKLKDEDIVDRLEKIASKEGVDID- 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh-hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-
Confidence 68999997778889999998887755566655544442221100000 0115889999999999999999876666554
Q ss_pred hHHHHHHHHHHHhCCC
Q 046626 96 NLVKIGEEIVKKSGGI 111 (557)
Q Consensus 96 ~~~~l~~~i~~~c~gl 111 (557)
.+..+.|++.++|-
T Consensus 210 --~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 210 --DDALKLIAKISDGD 223 (346)
T ss_pred --HHHHHHHHHHcCCc
Confidence 34557899999884
No 131
>PF14516 AAA_35: AAA-like domain
Probab=71.07 E-value=83 Score=30.97 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=42.5
Q ss_pred CcEEcCCCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCC
Q 046626 66 GGYKLEGLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGS 125 (557)
Q Consensus 66 ~~~~~~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~ 125 (557)
..+++.+++.++..+|...+-... ... ...++...++|+|.-+..++..+...
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~~~~~----~~~---~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRYGLEF----SQE---QLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cceeCCCCCHHHHHHHHHhhhccC----CHH---HHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 378999999999999998875321 111 27889999999999999999999863
No 132
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=71.02 E-value=31 Score=37.23 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=66.2
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++-++|||++..-+......+...+.......++|.+|.+ ..+..... .....|++..++.++..+.+.+.+-..
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~--SRC~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL--SRCLQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH--hhheEeeCCCCCHHHHHHHHHHHHHHc
Confidence 356679999999766666677777777665455666665555 44432111 112379999999999988888765333
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
+...+ ......|++.++|.+..+..+
T Consensus 195 ~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 195 QIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22221 344577899999977644433
No 133
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.99 E-value=32 Score=35.76 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-+......+...+..-.+..++|++|.+ ..+...... ....+++..++.++..+.+...+...+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH--hheeeecccccHHHHHHHHHHHHHHcC
Confidence 45568999999655555667777777666566777766644 444332211 123799999999999988888876544
Q ss_pred CCCChhHHHHHHHHHHHhCCChhH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLA 114 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPla 114 (557)
...+ .+....|++.++|-+..
T Consensus 193 i~i~---~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 193 IEHD---EESLKLIAENSSGSMRN 213 (491)
T ss_pred CCCC---HHHHHHHHHHcCCCHHH
Confidence 3332 23456788889887653
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=69.80 E-value=59 Score=33.62 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=60.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..........+...+........+|++|.+ +.+..... .....++...++.++..+.+...+-+.+
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~--sRc~~v~f~~l~~~el~~~L~~~~~~eg 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTIL--SRCQKMHLKRIPEETIIDKLALIAKQEG 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHH--HhceEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 56678899999544444556667776665456666666643 33332111 1122689999999998888877664333
Q ss_pred CCCChhHHHHHHHHHHHhCCChh
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPL 113 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPl 113 (557)
...+ .+.+..+++.++|.+.
T Consensus 198 ~~i~---~~al~~L~~~s~gdlr 217 (451)
T PRK06305 198 IETS---REALLPIARAAQGSLR 217 (451)
T ss_pred CCCC---HHHHHHHHHHcCCCHH
Confidence 2222 3455778888988654
No 135
>PRK04132 replication factor C small subunit; Provisional
Probab=69.18 E-value=56 Score=36.54 Aligned_cols=103 Identities=10% Similarity=0.013 Sum_probs=67.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCCC
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQ 91 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~ 91 (557)
+.-++|||++..-+......+...+.......++|.+|.+. .+.... ......+++.+++.++-.+.+...+-..+.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tI--rSRC~~i~F~~ls~~~i~~~L~~I~~~Egi 707 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI--QSRCAIFRFRPLRDEDIAKRLRYIAENEGL 707 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHH--hhhceEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 44799999997766667777777776544566777766653 333221 111337999999999988887776643322
Q ss_pred CCChhHHHHHHHHHHHhCCChhHHHHHHH
Q 046626 92 HKNPNLVKIGEEIVKKSGGIPLAVRTLGS 120 (557)
Q Consensus 92 ~~~~~~~~l~~~i~~~c~glPlal~~ig~ 120 (557)
..+ .+....+++.|+|-+..+..+-.
T Consensus 708 ~i~---~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 708 ELT---EEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 34568899999998755544433
No 136
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=68.57 E-value=42 Score=36.98 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=55.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEe--cCCh--HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhc
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVT--TRSN--KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAF 87 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivT--tr~~--~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~ 87 (557)
+++.++|||+|+.-....++.+...+. .|+.++|+ |.+. .+...... ....+++.+++.++..+++.+.+-
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~S--R~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVS--RSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhc--cccceecCCCCHHHHHHHHHHHHH
Confidence 467799999996555555555554443 35555553 3332 12111111 123799999999999999987653
Q ss_pred cCC----CCCChhHHHHHHHHHHHhCCChh
Q 046626 88 KEG----QHKNPNLVKIGEEIVKKSGGIPL 113 (557)
Q Consensus 88 ~~~----~~~~~~~~~l~~~i~~~c~glPl 113 (557)
... .....--.+....+++.+.|.-.
T Consensus 183 ~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 183 DKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred HHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 100 10001113445677888887643
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=68.43 E-value=59 Score=36.39 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=64.3
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++-++|||++.......+..|+..+.+-...+.+|++|.+ ..+..... .....|+...++.++..+.+....-..
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr--SRc~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR--SRTHHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH--hheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 345557889999777777777888888776556666665544 34443221 112379999999999888877755332
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
+...+ ......+++.++|-+..+
T Consensus 196 Gv~id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 196 GVPVE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHH
Confidence 22222 234467888899977433
No 138
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=68.35 E-value=38 Score=33.75 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=59.0
Q ss_pred HcCCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEE--ecCChHH--H-HHhcCCCCCCcEEcCCCChhhhHHHHH
Q 046626 9 CLNGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILV--TTRSNKV--A-SIMGTMRGTGGYKLEGLPYESCLSLFM 83 (557)
Q Consensus 9 ~L~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIiv--Ttr~~~v--~-~~~~~~~~~~~~~~~~L~~~~a~~Lf~ 83 (557)
+..++|.+|.+|.|.+-+..+-+ .++|.-..|.-|+| ||.+..- - ...+- ..+|.+++|+.++-.++..
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD---~lLp~vE~G~iilIGATTENPsF~ln~ALlSR---~~vf~lk~L~~~di~~~l~ 173 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQD---ALLPHVENGTIILIGATTENPSFELNPALLSR---ARVFELKPLSSEDIKKLLK 173 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhh---hhhhhhcCCeEEEEeccCCCCCeeecHHHhhh---hheeeeecCCHHHHHHHHH
Confidence 34589999999999654443333 34555556777776 5555311 1 11111 2389999999999999998
Q ss_pred HHhccCCCCCC---h-hHHHHHHHHHHHhCCChhH
Q 046626 84 KCAFKEGQHKN---P-NLVKIGEEIVKKSGGIPLA 114 (557)
Q Consensus 84 ~~a~~~~~~~~---~-~~~~l~~~i~~~c~glPla 114 (557)
+-+........ . --.+...-++..+.|--.+
T Consensus 174 ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 174 RALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 84332221110 1 1123446677888886443
No 139
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=67.29 E-value=34 Score=34.67 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=46.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHH-hcC--CCCCCcEEcCCCChhhhHHH
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASI-MGT--MRGTGGYKLEGLPYESCLSL 81 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~-~~~--~~~~~~~~~~~L~~~~a~~L 81 (557)
++..++||.| +....|+.....+.+.++. +|++|+-+..+... ..+ +.....+++.+|+-.|...+
T Consensus 94 ~~~yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 6689999999 5557898877777776666 88988887654422 111 11134799999998887664
No 140
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.23 E-value=72 Score=34.41 Aligned_cols=97 Identities=13% Similarity=0.223 Sum_probs=61.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEec-CChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTT-RSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTt-r~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-.......+...+..-.+.+.+|++| +...+..... .....++...++.++..+.+...+-..+
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~--SRc~~vef~~l~~~ei~~~L~~i~~~eg 203 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA--SRCQRFNFKRIPLDEIQSQLQMICRAEG 203 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH--hhceEEecCCCCHHHHHHHHHHHHHHcC
Confidence 445578999996656566777777776655566655555 4344443211 1123799999999998877776654333
Q ss_pred CCCChhHHHHHHHHHHHhCCChh
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPL 113 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPl 113 (557)
...+ .+.+..+++.++|-.-
T Consensus 204 i~I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 204 IQID---ADALQLIARKAQGSMR 223 (620)
T ss_pred CCCC---HHHHHHHHHHhCCCHH
Confidence 2222 3455778889998544
No 141
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.08 E-value=56 Score=35.15 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=65.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-.....+.+...+......+.+|++|.+. .+..... .....+++..++.++..+.+...+...+
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~--SR~~~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL--SRCQRFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH--hccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 456689999995555556667777776655566776666543 3333221 1123688889999998888887765443
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
...+ .+.+..+++.++|.+..+...
T Consensus 197 l~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 197 INLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 345678899999988654443
No 142
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.04 E-value=64 Score=32.26 Aligned_cols=97 Identities=14% Similarity=0.173 Sum_probs=59.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecC-ChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTR-SNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr-~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++.......+..+...+........+|++|. ...+..... .....++..+++.++....+...+...+
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~--sr~~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL--SRCQIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH--hcceeEecCCccHHHHHHHHHHHHHHcC
Confidence 4555799999954444556666666654444555555553 333322211 1122789999999998888888775544
Q ss_pred CCCChhHHHHHHHHHHHhCCChh
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPL 113 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPl 113 (557)
...+ .+.+..+++.++|.+-
T Consensus 185 ~~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 185 IKFE---DDALHIIAQKADGALR 204 (367)
T ss_pred CCCC---HHHHHHHHHhCCCCHH
Confidence 3322 3455777888888654
No 143
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=66.96 E-value=70 Score=35.05 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEec-CChHHHHH-hcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTT-RSNKVASI-MGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTt-r~~~v~~~-~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
+++-++|+|++..-....+..+...+........+|++| +...+... .... ..+++.+++.++..+.+...+-..
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc---q~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRV---QRFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc---eeEEccCCCHHHHHHHHHHHHHHc
Confidence 556688999996555566777777766544455555444 44444422 1112 379999999999888887765433
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
+.... .+.+..+++.++|-+.-+
T Consensus 194 gI~id---~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 194 NISYE---KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHH
Confidence 32222 234577889998866433
No 144
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=66.31 E-value=10 Score=32.66 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=33.6
Q ss_pred HHHHHcCCceE-EEEEeCCC---CCChhhHHHHHHhcCCCCCCcEEEEecCCh
Q 046626 5 IMRSCLNGKRY-LFVMDDVW---NEDPKVWDELKSLLWGGAKGSKILVTTRSN 53 (557)
Q Consensus 5 ~l~~~L~~kr~-LlVlDdv~---~~~~~~~~~l~~~~~~~~~gsrIivTtr~~ 53 (557)
..++.+....| |+|||.+- +-.....+.+...+....++.-||+|.|+.
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 34555555444 99999982 122234567777777777778899999995
No 145
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=64.64 E-value=26 Score=35.05 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=41.6
Q ss_pred CCcEEEEecCChHHHHH--hcCCCCCCcEEcCCCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCCh
Q 046626 42 KGSKILVTTRSNKVASI--MGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIP 112 (557)
Q Consensus 42 ~gsrIivTtr~~~v~~~--~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glP 112 (557)
.+.+||.||...+.... .....-...+.+...+.++..++|..++.+.....+-++ ..+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 36678888876433211 111111236899999999999999988865443322233 56677777764
No 146
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.03 E-value=77 Score=34.15 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
++.-++|||+|..-+...+..+...+.......++|++|.+ ..+..... .....++++.++.++..+.+.+.+-..+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIl--SRc~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVL--SRCLQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHH--HhceeeecCCCCHHHHHHHHHHHHHHcC
Confidence 34558899999766666777777777665555666655544 34432211 1123799999999998888887765443
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
...+ .+....+++.++|-+.-+..
T Consensus 201 i~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 201 VPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 3322 34457788888886654433
No 147
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=63.93 E-value=89 Score=30.63 Aligned_cols=94 Identities=9% Similarity=0.015 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++=.+|+|++...+......+...+.+-.++..+|++|.+. .+..... .....+.+.+++.+++.+.+.....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~--SRC~~~~~~~~~~~~~~~~L~~~~~--- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY--SRCQTWLIHPPEEQQALDWLQAQSS--- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH--hhceEEeCCCCCHHHHHHHHHHHhc---
Confidence 455578899997666666777888887777778888777764 4443211 1123799999999999888876541
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
.. ..-+...+..++|-|...
T Consensus 181 ~~-----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 181 AE-----ISEILTALRINYGRPLLA 200 (325)
T ss_pred cC-----hHHHHHHHHHcCCCHHHH
Confidence 11 112456788999999633
No 148
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=63.19 E-value=56 Score=31.93 Aligned_cols=96 Identities=10% Similarity=0.134 Sum_probs=61.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++=++|||++...+...-..+...+..-.+++.+|++|.+. .+..... .....+.+..++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr--SRCq~i~~~~~~~~~~~~~L~~~~---- 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR--SRCQRLEFKLPPAHEALAWLLAQG---- 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH--hhheEeeCCCcCHHHHHHHHHHcC----
Confidence 456689999995555545555666776666677777777653 4442211 112368899999999887776431
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
.. ..-+..++..++|-|+....+
T Consensus 186 ~~-----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 186 VS-----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CC-----hHHHHHHHHHcCCCHHHHHHH
Confidence 11 122567899999999865443
No 149
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.10 E-value=4.3 Score=22.82 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=7.5
Q ss_pred cceEeeCCCChhhhc
Q 046626 322 LRVIDLSETAIEVLS 336 (557)
Q Consensus 322 L~~L~l~~~~~~~l~ 336 (557)
|+.|++++|+++.+|
T Consensus 4 L~~L~vs~N~Lt~LP 18 (26)
T smart00364 4 LKELNVSNNQLTSLP 18 (26)
T ss_pred cceeecCCCccccCc
Confidence 445555555555444
No 150
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.96 E-value=64 Score=33.53 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-.....+.+...+........+|++|.+ ..+...... ....++..+++.++....+...+...+
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS--RCQVIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc--CcEEEEECCccHHHHHHHHHHHHHHcC
Confidence 46679999999544444455566666544334444444433 334332211 123799999999998888888775433
Q ss_pred CCCChhHHHHHHHHHHHhCC-ChhHHHHHHHh
Q 046626 91 QHKNPNLVKIGEEIVKKSGG-IPLAVRTLGSL 121 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~g-lPlal~~ig~~ 121 (557)
...+ .+....+++.++| ++.|+..+-..
T Consensus 194 i~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 194 IEID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CCCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3322 2345667777755 46666666543
No 151
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=61.38 E-value=66 Score=34.58 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=64.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEec-CChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTT-RSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTt-r~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-.......+...+..-.+.+++|++| ....+..... .....+++..++.++..+.+...+-+.+
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~--SRcq~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVL--SRCQRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHH--hheeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 345578999996555556667777776655567766555 3344432221 1123799999999999988888775443
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
...+ .+....+++.++|-+.-+..
T Consensus 209 i~i~---~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 209 VEVE---DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 3322 24457788889988765443
No 152
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=59.51 E-value=74 Score=34.01 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=63.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCCCC
Q 046626 14 RYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQH 92 (557)
Q Consensus 14 r~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~~ 92 (557)
+=++|+|++..-+...+..+...+........+|++|.+ ..+..... .....+++.+++.++....+...+-..+..
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~--SRcq~ieF~~Ls~~eL~~~L~~il~kegi~ 197 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII--SRCQRYNFKKLNNSELQELLKSIAKKEKIK 197 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH--hhhhhcccCCCCHHHHHHHHHHHHHHcCCC
Confidence 336999999655556677777777655455666655543 34432211 112379999999999988888776443322
Q ss_pred CChhHHHHHHHHHHHhCCChh-HHHHHHH
Q 046626 93 KNPNLVKIGEEIVKKSGGIPL-AVRTLGS 120 (557)
Q Consensus 93 ~~~~~~~l~~~i~~~c~glPl-al~~ig~ 120 (557)
.+ .+.+..+++.++|-+. |+..+-.
T Consensus 198 Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 198 IE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred CC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22 2345778899999654 4444443
No 153
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.46 E-value=1.1e+02 Score=31.89 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-.......+...+....+...+|++|.+ ..+...... ....++..+++.++..+.+...+-..+
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~S--Rc~~i~f~~ls~~el~~~L~~i~k~eg 195 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILS--RCQRFIFSKPTKEQIKEYLKRICNEEK 195 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHH--hceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56679999999655555566677777655445556555543 333322110 122689999999998888877664433
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
...+ .+.+..++..++|.+..+...
T Consensus 196 i~id---~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 196 IEYE---EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3222 234566788888866544333
No 154
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=59.43 E-value=38 Score=34.18 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=56.5
Q ss_pred EEEEeCCCCC-ChhhHH-HHHHh---cCCCCCCcEEEEecCC---------hHHHHHhcCCCCCCcEEcCCCChhhhHHH
Q 046626 16 LFVMDDVWNE-DPKVWD-ELKSL---LWGGAKGSKILVTTRS---------NKVASIMGTMRGTGGYKLEGLPYESCLSL 81 (557)
Q Consensus 16 LlVlDdv~~~-~~~~~~-~l~~~---~~~~~~gsrIivTtr~---------~~v~~~~~~~~~~~~~~~~~L~~~~a~~L 81 (557)
++++||++-- ....|+ .+... +... |-.||+|++. .++...+...- ++++.+.+.+....+
T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl---~~~I~~Pd~e~r~ai 252 (408)
T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGL---VVEIEPPDDETRLAI 252 (408)
T ss_pred eeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhcee---EEeeCCCCHHHHHHH
Confidence 8899999531 111222 23332 3332 3489999965 34445555555 899999999999999
Q ss_pred HHHHhccCCCCCC-hhHHHHHHHHHHHhCCChhHHH
Q 046626 82 FMKCAFKEGQHKN-PNLVKIGEEIVKKSGGIPLAVR 116 (557)
Q Consensus 82 f~~~a~~~~~~~~-~~~~~l~~~i~~~c~glPlal~ 116 (557)
+.+.+...+...+ ....-++..+-+-..-+.-|+.
T Consensus 253 L~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~ 288 (408)
T COG0593 253 LRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN 288 (408)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 9997765544332 3334455555444444444443
No 155
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.39 E-value=96 Score=32.83 Aligned_cols=102 Identities=14% Similarity=0.189 Sum_probs=62.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-.......+...+.......++|++|.+. .+.... ......+++..++.++..+.+.+.+-..+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI--~SRc~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV--LSRCLQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH--HHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 556689999996656555667777776655566666666543 222110 00112688999999998887776654333
Q ss_pred CCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPL-AVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPl-al~~i 118 (557)
...+ ......+++.++|.+. |+..+
T Consensus 196 i~~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 196 IPFD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 2344778888999765 44333
No 156
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=58.93 E-value=86 Score=33.45 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=64.0
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++-++|+|++..-+...+..+...+....+...+|++|.+ ..+...... ....++...++.++..+.+...+...
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS--RCQHFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH--hceEEEecCCCHHHHHHHHHHHHHHc
Confidence 356668999999666666677777777665556666666544 333322111 12268999999999888888776544
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
+...+ .+.+..+++.++|-+..+
T Consensus 195 gi~id---~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 195 QIKYE---DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHH
Confidence 33322 344567888888876544
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.83 E-value=77 Score=34.23 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=64.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEec-CChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTT-RSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTt-r~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++=++|+|++..-+...+..+...+..-...+.+|++| +...+...... ....++...++.++..+.+...+-..+
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S--Rc~iv~f~~ls~~ei~~~L~~ia~~eg 197 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS--RCQIFDFNRIQVADIVNHLQYVASKEG 197 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh--hhheeecCCCCHHHHHHHHHHHHHHcC
Confidence 445578999996666667777888877655567666555 44444432211 123799999999998888887765443
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
.... .+.+..+++.++|-..-+
T Consensus 198 i~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 198 ITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHH
Confidence 3322 234577888888866533
No 158
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=58.12 E-value=1e+02 Score=30.04 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=62.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEec-CChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTT-RSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTt-r~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+.+=++|+|++...+......+...+..-. .+.+|++| +-..+...... ....+++.+++.++..+.+........
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~ 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEI 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhcccc
Confidence 556689999996556566666777775544 34555554 44444433211 233799999999999999988752111
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
. . .....++..++|-|..+...
T Consensus 200 ~----~--~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 200 L----N--INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred c----h--hHHHHHHHHcCCCHHHHHHH
Confidence 0 1 11357889999999765443
No 159
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.22 E-value=4.2 Score=22.08 Aligned_cols=10 Identities=60% Similarity=0.820 Sum_probs=3.2
Q ss_pred ccCeeeccCC
Q 046626 344 HLRYLDLSDN 353 (557)
Q Consensus 344 ~L~~L~l~~~ 353 (557)
+|+.|+|++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 3344444433
No 160
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=55.74 E-value=9 Score=21.58 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=9.7
Q ss_pred CCCCcEEEcccccccc
Q 046626 390 LVSLRMFMVSTKQKSL 405 (557)
Q Consensus 390 l~~L~~L~l~~~~~~~ 405 (557)
+++|+.|+++.|.+..
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3556666666666643
No 161
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=55.30 E-value=68 Score=34.37 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=52.6
Q ss_pred EEEEeCCCCCC-hhhHH-HHHHhcCCC-CCCcEEEEecCC---------hHHHHHhcCCCCCCcEEcCCCChhhhHHHHH
Q 046626 16 LFVMDDVWNED-PKVWD-ELKSLLWGG-AKGSKILVTTRS---------NKVASIMGTMRGTGGYKLEGLPYESCLSLFM 83 (557)
Q Consensus 16 LlVlDdv~~~~-~~~~~-~l~~~~~~~-~~gsrIivTtr~---------~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~ 83 (557)
+|||||+.... ...|+ .+...+... ..|..|||||+. .++...+...- +++++..+.+.-..++.
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GL---vv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGL---ITDVQPPELETRIAILR 456 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCc---eEEcCCCCHHHHHHHHH
Confidence 78999995321 12232 233333211 235568888875 23334444444 89999999999999999
Q ss_pred HHhccCCCCCChhHHHHHHHHHHHhCCC
Q 046626 84 KCAFKEGQHKNPNLVKIGEEIVKKSGGI 111 (557)
Q Consensus 84 ~~a~~~~~~~~~~~~~l~~~i~~~c~gl 111 (557)
+++-..+.... .++..-|++.+.+.
T Consensus 457 kka~~r~l~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 457 KKAVQEQLNAP---PEVLEFIASRISRN 481 (617)
T ss_pred HHHHhcCCCCC---HHHHHHHHHhccCC
Confidence 88755433322 34445555555443
No 162
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=54.51 E-value=1.4e+02 Score=29.51 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=62.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++=.+|+|++...+...+..+...+..-.+++.+|.+|.+ ..+...... ....+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~~---- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQG---- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHcC----
Confidence 34557889999777777788888888777777877766666 444433211 12379999999999988887642
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
.+ . ...++..++|-|.....+
T Consensus 205 ~~---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 VA---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred CC---h----HHHHHHHcCCCHHHHHHH
Confidence 11 1 123567789999754433
No 163
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=53.82 E-value=16 Score=33.46 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=29.4
Q ss_pred eEEEEEeCCCCC-ChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHh
Q 046626 14 RYLFVMDDVWNE-DPKVWDELKSLLWGGAKGSKILVTTRSNKVASIM 59 (557)
Q Consensus 14 r~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~ 59 (557)
.-++|||||... +......+...+....+++.+||||.++.+....
T Consensus 159 ~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 159 SPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp -SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 448999999533 3444555666666555678999999999887654
No 164
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.92 E-value=1.4e+02 Score=31.51 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=61.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
++.-++|+|+|..-+......+...+....+..++|++|.+. .+.... ......+++..++.++..+.+...+-..+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI--~SRc~~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTV--LSRCLQFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHH--HHHhhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 455689999996656666777777776655567777666543 333211 11112688999999887776665554333
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
...+ ......+++.++|-+..+
T Consensus 196 i~~~---~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 196 VEFE---NAALDLLARAANGSVRDA 217 (509)
T ss_pred CCCC---HHHHHHHHHHcCCcHHHH
Confidence 3222 223467788888876544
No 165
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.77 E-value=1.8e+02 Score=31.50 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=63.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-....+..+...+........+|++|.+ ..+..... .....++...++.++..+.+.+.+-..+
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr--SRc~~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII--SRCQRFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH--hheeEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45568899999665666677777777665445555555544 33332211 1122688889999888887777664433
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
.... .+.+..+++.++|.+..+..+
T Consensus 198 i~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 198 IEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2222 234678889999977655443
No 166
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.95 E-value=1.5e+02 Score=31.79 Aligned_cols=104 Identities=16% Similarity=0.257 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEec-CChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTT-RSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTt-r~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-+......+...+..-.....+|++| ....+...... ....|+...++.++..+.+...+-..+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 455688999997666667777777776655566655555 44444432111 123799999999998888877665443
Q ss_pred CCCChhHHHHHHHHHHHhCCChh-HHHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPL-AVRTLGS 120 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPl-al~~ig~ 120 (557)
...+ .+....|++.++|-+. |+..+-.
T Consensus 195 i~i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 195 VVVD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3322 2345677888888764 4444444
No 167
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=50.04 E-value=32 Score=28.30 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=26.5
Q ss_pred cCCceEEEEEeCCCCCChhhHHHHHHhcCCC------CCCcEEEEecCChH
Q 046626 10 LNGKRYLFVMDDVWNEDPKVWDELKSLLWGG------AKGSKILVTTRSNK 54 (557)
Q Consensus 10 L~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~------~~gsrIivTtr~~~ 54 (557)
...+..++|+||++.-.......+...+... ..+.+||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3456789999999643222223333333222 35788888887654
No 168
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=48.69 E-value=95 Score=31.55 Aligned_cols=93 Identities=22% Similarity=0.118 Sum_probs=52.3
Q ss_pred EEEEeCCCCCChh-hH-HHHHHhcCCC-CCCcEEEEecCCh-H--------HHHHhcCCCCCCcEEcCCCChhhhHHHHH
Q 046626 16 LFVMDDVWNEDPK-VW-DELKSLLWGG-AKGSKILVTTRSN-K--------VASIMGTMRGTGGYKLEGLPYESCLSLFM 83 (557)
Q Consensus 16 LlVlDdv~~~~~~-~~-~~l~~~~~~~-~~gsrIivTtr~~-~--------v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~ 83 (557)
+|||||+...... .+ +.+...+... ..|..||+||... . +...+... ..+++++.+.++-.+++.
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g---~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG---LVVDIEPPDLETRLAILQ 278 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC---eEEEeCCCCHHHHHHHHH
Confidence 7899999532111 11 2233332211 1345678877642 1 12222222 268999999999999999
Q ss_pred HHhccCCCCCChhHHHHHHHHHHHhCCChhH
Q 046626 84 KCAFKEGQHKNPNLVKIGEEIVKKSGGIPLA 114 (557)
Q Consensus 84 ~~a~~~~~~~~~~~~~l~~~i~~~c~glPla 114 (557)
..+-..+...+ .++...+++.+.|..-.
T Consensus 279 ~~~~~~~~~l~---~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 279 KKAEEEGLELP---DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHcCCCCC---HHHHHHHHHhcCCCHHH
Confidence 88755433322 34556677777776554
No 169
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=47.43 E-value=16 Score=19.15 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=14.0
Q ss_pred CcceEeeCCCChhhhcccc
Q 046626 321 FLRVIDLSETAIEVLSREI 339 (557)
Q Consensus 321 ~L~~L~l~~~~~~~l~~~~ 339 (557)
+|..|++.++++.++++..
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 3677888888888877653
No 170
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=47.21 E-value=1.6e+02 Score=28.78 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=63.2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCCC
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQ 91 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~ 91 (557)
.+=.+|+|++..........+...+.+-.+++.+|.+|.+. .+...... ....+.+..++.+++.+.+.... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S--RCq~~~~~~~~~~~~~~~L~~~~----~ 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS--RCQQWVVTPPSTAQAMQWLKGQG----I 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh--cceeEeCCCCCHHHHHHHHHHcC----C
Confidence 34578899996666666777888887766777777776664 44433211 22378999999999988876532 1
Q ss_pred CCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 92 HKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 92 ~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
. .+..++..++|-|+....+
T Consensus 182 ---~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 ---T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ---c----hHHHHHHHcCCCHHHHHHH
Confidence 1 1356789999999876544
No 171
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=46.97 E-value=1.5e+02 Score=28.45 Aligned_cols=76 Identities=7% Similarity=0.047 Sum_probs=43.9
Q ss_pred ceEEEEEeCCCCC---------ChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcCC-----CCCCcEEcCCCChhhh
Q 046626 13 KRYLFVMDDVWNE---------DPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGTM-----RGTGGYKLEGLPYESC 78 (557)
Q Consensus 13 kr~LlVlDdv~~~---------~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~~-----~~~~~~~~~~L~~~~a 78 (557)
..-+|+||++..- ....++.+...+.....+-+||+++.....-..+... .....+++..++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3468899999411 1122344555555554566777776543222111110 0012689999999999
Q ss_pred HHHHHHHhcc
Q 046626 79 LSLFMKCAFK 88 (557)
Q Consensus 79 ~~Lf~~~a~~ 88 (557)
.+++...+-.
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9998887644
No 172
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.95 E-value=1.4e+02 Score=32.12 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=61.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecC-ChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTR-SNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr-~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-+......+...+....+...+|++|. ...+...... ....++...++.++....+...+-..+
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 3455789999965555566677777765545666665554 4444432111 122688899999888877776553333
Q ss_pred CCCChhHHHHHHHHHHHhCCCh-hHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIP-LAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glP-lal~~i 118 (557)
...+ .+....+++.++|-. .|+..+
T Consensus 196 i~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 196 ISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 234567888888854 444444
No 173
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=46.40 E-value=1.7e+02 Score=28.77 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=62.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++=.+|+|++...+......+...+.+-.+++.+|.+|.+. .++..... ....+.+..++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS--RCq~~~~~~~~~~~~~~~L~~~~---~ 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS--RCRLHYLAPPPEQYALTWLSREV---T 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh--ccccccCCCCCHHHHHHHHHHcc---C
Confidence 556688999996666666667777777766777777777764 45533211 12268899999999888775432 1
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
.+ .+-+..++..++|.|...
T Consensus 182 --~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 182 --MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred --CC---HHHHHHHHHHcCCCHHHH
Confidence 11 122567899999999643
No 174
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=42.10 E-value=1.3e+02 Score=31.16 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=54.2
Q ss_pred EEEEEeCCCCCCh-hhH-HHHHHhcCC-CCCCcEEEEecCCh---------HHHHHhcCCCCCCcEEcCCCChhhhHHHH
Q 046626 15 YLFVMDDVWNEDP-KVW-DELKSLLWG-GAKGSKILVTTRSN---------KVASIMGTMRGTGGYKLEGLPYESCLSLF 82 (557)
Q Consensus 15 ~LlVlDdv~~~~~-~~~-~~l~~~~~~-~~~gsrIivTtr~~---------~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf 82 (557)
-+||||||..... ..+ +.+...+.. ...|..||+||... .+...+.... .+++++.+.++-.+++
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl---~v~i~~pd~~~r~~il 289 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGL---TVDIEPPDLETRIAIL 289 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCe---eEEecCCCHHHHHHHH
Confidence 3899999943211 111 223332211 11245578877652 1222333323 7999999999999999
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHhCCChhHH
Q 046626 83 MKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 83 ~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
...+-..+...+ .++..-|++.+.|..-.+
T Consensus 290 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 998854332222 345667777777765543
No 175
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=41.92 E-value=22 Score=29.08 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=28.9
Q ss_pred HHHHHHHcCCc-eEEEEEeCCCCC-ChhhHHHHHHhcCCCCCCcEEEEecCC
Q 046626 3 QQIMRSCLNGK-RYLFVMDDVWNE-DPKVWDELKSLLWGGAKGSKILVTTRS 52 (557)
Q Consensus 3 ~~~l~~~L~~k-r~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gsrIivTtr~ 52 (557)
.+.+.+.+... ..+||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 76 ~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 34555666544 469999999543 3344455544443 456777777654
No 176
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=41.81 E-value=2.3e+02 Score=30.31 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=59.9
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecC-ChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTR-SNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr-~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++-++|+|++..-....+..+...+........+|++|. -..+..... .....++...++.++..+.+...+-..
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~--SRc~~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL--SRCQRFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH--hHheEEecCCCCHHHHHHHHHHHHHHc
Confidence 35566889999965555567777777665444555555443 333332211 112268888999988888887766443
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLA 114 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPla 114 (557)
+...+ .+.+..+++.++|-+..
T Consensus 195 gi~i~---~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 195 GIEYE---DEALRLIARAAEGGMRD 216 (559)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHH
Confidence 33322 24456778888886653
No 177
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=41.39 E-value=40 Score=29.64 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=34.3
Q ss_pred HHHHHHcCCce-EEEEEeCCC---CCChhhHHHHHHhcCCCCCCcEEEEecCCh
Q 046626 4 QIMRSCLNGKR-YLFVMDDVW---NEDPKVWDELKSLLWGGAKGSKILVTTRSN 53 (557)
Q Consensus 4 ~~l~~~L~~kr-~LlVlDdv~---~~~~~~~~~l~~~~~~~~~gsrIivTtr~~ 53 (557)
+..++.+.... =|+|||.+- +-.....+.+...+....++.-||+|-|+.
T Consensus 105 ~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 105 QYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 34555665544 499999982 122234567777787777788999999984
No 178
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=41.10 E-value=2.8e+02 Score=28.62 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=47.9
Q ss_pred EEEEEeCCCCCChhhH--HHHHHhcCC-CCCCcEEEEecCCh---------HHHHHhcCCCCCCcEEcCCCChhhhHHHH
Q 046626 15 YLFVMDDVWNEDPKVW--DELKSLLWG-GAKGSKILVTTRSN---------KVASIMGTMRGTGGYKLEGLPYESCLSLF 82 (557)
Q Consensus 15 ~LlVlDdv~~~~~~~~--~~l~~~~~~-~~~gsrIivTtr~~---------~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf 82 (557)
-+|++||+.......+ +.+...+.. ...|..||+||... .+...+.... .+++.+++.++-..++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl---~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGI---AIPLHPLTKEGLRSFL 280 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCe---EEecCCCCHHHHHHHH
Confidence 3788899843211111 223332211 01355688888542 2222233323 7899999999999999
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHhCC
Q 046626 83 MKCAFKEGQHKNPNLVKIGEEIVKKSGG 110 (557)
Q Consensus 83 ~~~a~~~~~~~~~~~~~l~~~i~~~c~g 110 (557)
.+.+-..+...+ .++..-+++.+.|
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCC
Confidence 888755433222 2333344444443
No 179
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=41.06 E-value=35 Score=29.88 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=34.3
Q ss_pred HHHHHHcCCceE-EEEEeCCC---CCChhhHHHHHHhcCCCCCCcEEEEecCCh
Q 046626 4 QIMRSCLNGKRY-LFVMDDVW---NEDPKVWDELKSLLWGGAKGSKILVTTRSN 53 (557)
Q Consensus 4 ~~l~~~L~~kr~-LlVlDdv~---~~~~~~~~~l~~~~~~~~~gsrIivTtr~~ 53 (557)
+..++.+...+| ++|||.+- +-.....+.+...+....++.-||+|-|+.
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 345566655555 99999982 112233467777777777778999999986
No 180
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=40.48 E-value=42 Score=29.91 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=34.0
Q ss_pred HHHHHcCCceE-EEEEeCCC---CCChhhHHHHHHhcCCCCCCcEEEEecCCh
Q 046626 5 IMRSCLNGKRY-LFVMDDVW---NEDPKVWDELKSLLWGGAKGSKILVTTRSN 53 (557)
Q Consensus 5 ~l~~~L~~kr~-LlVlDdv~---~~~~~~~~~l~~~~~~~~~gsrIivTtr~~ 53 (557)
..++.+...+| ++|||.+- +-.....+.+...+....++.-||+|-|+.
T Consensus 106 ~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 106 EAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 44556655544 99999982 112233567778887777778999999985
No 181
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=40.20 E-value=2.1e+02 Score=29.57 Aligned_cols=93 Identities=16% Similarity=0.011 Sum_probs=51.0
Q ss_pred ceEEEEEeCCCCC-ChhhH-HHHHHhcCC-CCCCcEEEEecC-ChHH--------HHHhcCCCCCCcEEcCCCChhhhHH
Q 046626 13 KRYLFVMDDVWNE-DPKVW-DELKSLLWG-GAKGSKILVTTR-SNKV--------ASIMGTMRGTGGYKLEGLPYESCLS 80 (557)
Q Consensus 13 kr~LlVlDdv~~~-~~~~~-~~l~~~~~~-~~~gsrIivTtr-~~~v--------~~~~~~~~~~~~~~~~~L~~~~a~~ 80 (557)
+.-+|++||+..- ....+ +.+...+.. ...|..||+||. ...- ...+.... .+++++.+.++-..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl---~v~i~~pd~e~r~~ 270 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGL---VAKLEPPDEETRKK 270 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCc---eEeeCCCCHHHHHH
Confidence 3458999999421 11111 123222211 112446888875 3221 11222332 78999999999999
Q ss_pred HHHHHhccCCCCCChhHHHHHHHHHHHhCCC
Q 046626 81 LFMKCAFKEGQHKNPNLVKIGEEIVKKSGGI 111 (557)
Q Consensus 81 Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~gl 111 (557)
++.+.+-..+...+ .++..-|++.+.|.
T Consensus 271 IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 271 IARKMLEIEHGELP---EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHhccccC
Confidence 99888754332222 34556677776664
No 182
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=39.59 E-value=33 Score=29.98 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=31.1
Q ss_pred HHHHHHcCCceE-EEEEeCCC---CCChhhHHHHHHhcCCCCCCcEEEEecCChH
Q 046626 4 QIMRSCLNGKRY-LFVMDDVW---NEDPKVWDELKSLLWGGAKGSKILVTTRSNK 54 (557)
Q Consensus 4 ~~l~~~L~~kr~-LlVlDdv~---~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~ 54 (557)
+..++.+...+| |||||.|- +......+.+...+....+..-||+|-|+..
T Consensus 86 ~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 86 EEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 456667765555 99999982 1222445777788877777889999999963
No 183
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=39.41 E-value=1.8e+02 Score=32.83 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=36.9
Q ss_pred EEcCCCChhhhHHHHHHHhccCCCCC-ChhHHHHHHHHHHHhCCChhHHHHHHHhhc
Q 046626 68 YKLEGLPYESCLSLFMKCAFKEGQHK-NPNLVKIGEEIVKKSGGIPLAVRTLGSLLY 123 (557)
Q Consensus 68 ~~~~~L~~~~a~~Lf~~~a~~~~~~~-~~~~~~l~~~i~~~c~glPlal~~ig~~L~ 123 (557)
+...+.+.++-.+++...+-...... +..++-+|+.+|...|..-.||.++-.+..
T Consensus 931 IvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 931 LVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 56689999999999999886432222 334455556566555666677777766654
No 184
>CHL00181 cbbX CbbX; Provisional
Probab=36.74 E-value=3.4e+02 Score=26.09 Aligned_cols=76 Identities=7% Similarity=0.069 Sum_probs=43.4
Q ss_pred eEEEEEeCCCCC---------ChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcC-----CCCCCcEEcCCCChhhhH
Q 046626 14 RYLFVMDDVWNE---------DPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGT-----MRGTGGYKLEGLPYESCL 79 (557)
Q Consensus 14 r~LlVlDdv~~~---------~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~-----~~~~~~~~~~~L~~~~a~ 79 (557)
.-+|+||++..- ..+..+.+...+.....+.+||+++....+...... ......++...++.++..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 458999999421 112223344444444445677777765443211100 001126889999999999
Q ss_pred HHHHHHhccC
Q 046626 80 SLFMKCAFKE 89 (557)
Q Consensus 80 ~Lf~~~a~~~ 89 (557)
+++...+-..
T Consensus 203 ~I~~~~l~~~ 212 (287)
T CHL00181 203 QIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHh
Confidence 9988877543
No 185
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=36.03 E-value=25 Score=20.04 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=6.3
Q ss_pred CcceEeeCCCChh
Q 046626 321 FLRVIDLSETAIE 333 (557)
Q Consensus 321 ~L~~L~l~~~~~~ 333 (557)
.|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3455555555443
No 186
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=33.74 E-value=4.3e+02 Score=25.22 Aligned_cols=99 Identities=11% Similarity=0.005 Sum_probs=56.8
Q ss_pred CCceEEEEEeCCCCCC-hhhHHHHHHhcCCCCCCcEEEEecCChH-------HHHHhcCCCCCCcEEcCCCChhhhHHHH
Q 046626 11 NGKRYLFVMDDVWNED-PKVWDELKSLLWGGAKGSKILVTTRSNK-------VASIMGTMRGTGGYKLEGLPYESCLSLF 82 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~-~~~~~~l~~~~~~~~~gsrIivTtr~~~-------v~~~~~~~~~~~~~~~~~L~~~~a~~Lf 82 (557)
-+++-++|+++..... ...++.+...+....++..+|+++...+ +...... ...+....++..+..+..
T Consensus 44 f~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~---~~~i~~~~~~~~~~~~~i 120 (302)
T TIGR01128 44 FSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKN---AQIVECKTPKEQELPRWI 120 (302)
T ss_pred ccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcC---eeEEEecCCCHHHHHHHH
Confidence 3456678899985432 3457888888877666666676664321 2221112 226777778777777776
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHhCCChhHH
Q 046626 83 MKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 83 ~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
...+-..+...+ .+.+..+++.++|...++
T Consensus 121 ~~~~~~~g~~i~---~~a~~~l~~~~~~d~~~l 150 (302)
T TIGR01128 121 QARLKKLGLRID---PDAVQLLAELVEGNLLAI 150 (302)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHhCcHHHHH
Confidence 666644433322 233455666666644433
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=33.30 E-value=62 Score=27.94 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=32.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK 54 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~ 54 (557)
++=.+|+|++.......+..+...+.....++++|++|++.+
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 455889999977777778888888877778899999998864
No 188
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=33.01 E-value=2.9 Score=43.31 Aligned_cols=141 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred ccCCCCCcEEEecCCCcc-chhHHHHHHhhcC-CCcceEeeCCCChh-----hhccccCCCCccCeeeccCCcCcc----
Q 046626 289 LSDLRRARTILFPINDEK-TNQSILTSCISKS-QFLRVIDLSETAIE-----VLSREIGNLKHLRYLDLSDNDKIK---- 357 (557)
Q Consensus 289 ~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~---- 357 (557)
+.....|..+.+..+..+ .....+-..+... ..+++|++..+.++ .+...+....+++.++++.|....
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Q ss_pred ccchhhhc----CCcCcEeecCCcCCCc----cccccccCCCC-CcEEEccccccc-----ccccCcCCC-CCCCeeccc
Q 046626 358 KLPNSICE----LHSLQTLSLGGCRELE----ELPKDIRYLVS-LRMFMVSTKQKS-----LLESGIGCL-SSLRFLMIS 422 (557)
Q Consensus 358 ~lp~~~~~----l~~L~~L~l~~~~~~~----~~p~~~~~l~~-L~~L~l~~~~~~-----~~~~~~~~l-~~L~~L~l~ 422 (557)
.++..+.. ..++++|++.+|.... .+-..+...+. ++.+++..|.+. .+...+..+ ..+++++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Q ss_pred ccccccc
Q 046626 423 DCENLEY 429 (557)
Q Consensus 423 ~c~~l~~ 429 (557)
.|+....
T Consensus 271 ~nsi~~~ 277 (478)
T KOG4308|consen 271 RNSITEK 277 (478)
T ss_pred cCCcccc
No 189
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=32.26 E-value=1.8e+02 Score=28.20 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=32.8
Q ss_pred HHHHHHHcC--CceEEEEEeCCCCCChhhHHHHHHhcC--CCCCCcEEEEecCChHHHHHh
Q 046626 3 QQIMRSCLN--GKRYLFVMDDVWNEDPKVWDELKSLLW--GGAKGSKILVTTRSNKVASIM 59 (557)
Q Consensus 3 ~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~l~~~~~--~~~~gsrIivTtr~~~v~~~~ 59 (557)
.+.+.+.+. ++|+++|+||+.+..+.....+..... ...++...|+..-.+.+....
T Consensus 160 ~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai 220 (325)
T PF07693_consen 160 ISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAI 220 (325)
T ss_pred HHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHH
Confidence 445566664 589999999997655544333333221 122567666666555555443
No 190
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=32.13 E-value=2.6e+02 Score=27.10 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=58.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-hHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-NKVASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++=++|+|++..........+...+....+++.+|++|.+ ..+.... ......++..+++.++..+.+....
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI--~SRc~~~~f~~l~~~~l~~~l~~~~---- 162 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTI--VSRCQVFNVKEPDQQKILAKLLSKN---- 162 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHH--HhCeEEEECCCCCHHHHHHHHHHcC----
Confidence 46778889998655555666778788777677777765544 4444321 1123379999999999877665431
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
. . .+.+..++...+|.=.|+..
T Consensus 163 ~--~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 163 K--E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred C--C---hhHHHHHHHHcCCHHHHHHH
Confidence 1 1 12345566666663344444
No 191
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=31.19 E-value=89 Score=27.71 Aligned_cols=50 Identities=18% Similarity=0.340 Sum_probs=35.9
Q ss_pred HHHHHHcCCceE-EEEEeCCC---CCChhhHHHHHHhcCCCCCCcEEEEecCCh
Q 046626 4 QIMRSCLNGKRY-LFVMDDVW---NEDPKVWDELKSLLWGGAKGSKILVTTRSN 53 (557)
Q Consensus 4 ~~l~~~L~~kr~-LlVlDdv~---~~~~~~~~~l~~~~~~~~~gsrIivTtr~~ 53 (557)
+.-++.+.+.+| |+|||.+. +-....++.+...+....+..-||+|-|..
T Consensus 112 ~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 112 EHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGA 165 (198)
T ss_pred HHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCC
Confidence 345666777666 99999982 112245678888888777788999999984
No 192
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=29.94 E-value=3.5e+02 Score=23.10 Aligned_cols=98 Identities=8% Similarity=0.030 Sum_probs=48.5
Q ss_pred ceEEEEEeCC----CCCChhhHHHHHHhcCCCCCCcEEEEecC-ChH----HHHHhcCCCCCCcEEcCCCChhhhHHHHH
Q 046626 13 KRYLFVMDDV----WNEDPKVWDELKSLLWGGAKGSKILVTTR-SNK----VASIMGTMRGTGGYKLEGLPYESCLSLFM 83 (557)
Q Consensus 13 kr~LlVlDdv----~~~~~~~~~~l~~~~~~~~~gsrIivTtr-~~~----v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~ 83 (557)
.+-++|+.+. .......+..+...+....+++.+|+.+. ..+ ....... ....++...++..+......
T Consensus 57 ~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~--~~~~~~~~~~~~~~~~~~i~ 134 (172)
T PF06144_consen 57 DKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKK--QAIVIECKKPKEQELPRWIK 134 (172)
T ss_dssp SEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTT--TEEEEEE----TTTHHHHHH
T ss_pred CCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhc--ccceEEecCCCHHHHHHHHH
Confidence 4455555555 22345678888888887777888888887 222 2222222 11246667777777777776
Q ss_pred HHhccCCCCCChhHHHHHHHHHHHhCCChhHH
Q 046626 84 KCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 84 ~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
..+-..+...+ .+.+..++...++.+.++
T Consensus 135 ~~~~~~g~~i~---~~a~~~L~~~~~~d~~~l 163 (172)
T PF06144_consen 135 ERAKKNGLKID---PDAAQYLIERVGNDLSLL 163 (172)
T ss_dssp HHHHHTT-EE----HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhChHHHHH
Confidence 66644433222 334455666666655443
No 193
>PRK08116 hypothetical protein; Validated
Probab=29.24 E-value=64 Score=30.64 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=24.0
Q ss_pred HHcCCceEEEEEeCCCCCChhhHHH--HHHhcCCC-CCCcEEEEecCC
Q 046626 8 SCLNGKRYLFVMDDVWNEDPKVWDE--LKSLLWGG-AKGSKILVTTRS 52 (557)
Q Consensus 8 ~~L~~kr~LlVlDdv~~~~~~~~~~--l~~~~~~~-~~gsrIivTtr~ 52 (557)
+.+.+-. ||||||+-.+....|.. +...+... ..|..+||||..
T Consensus 174 ~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 174 RSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3344333 89999994333334433 33333321 245678888864
No 194
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=28.83 E-value=2.9e+02 Score=27.92 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=38.9
Q ss_pred CcEEEEecCChHHHHH--hcCCCCCCcEEcCCCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC
Q 046626 43 GSKILVTTRSNKVASI--MGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGI 111 (557)
Q Consensus 43 gsrIivTtr~~~v~~~--~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~gl 111 (557)
+.+||.||...+.... .....-...+++...+.++-.++|..+..+.....+-++ ..+++.+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 5567778776543321 111111236899999999999999988754433322233 4556666664
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=27.63 E-value=1.9e+02 Score=28.38 Aligned_cols=72 Identities=11% Similarity=0.202 Sum_probs=48.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHH
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKC 85 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~ 85 (557)
+.+=.+|+|++...+......+...+....+++.+|++|.+. .+.... ......+++..++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI--rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI--LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH--HhhceeeeCCCCCHHHHHHHHHHc
Confidence 445578999996666666667777887766778888777664 333221 111237999999999987777643
No 196
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=26.65 E-value=1.8e+02 Score=28.18 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=38.0
Q ss_pred ceEEEEEeCCCCC-ChhhHHHHHHhcCCCCCCcEEEEecCChHHH-HHhcCCCCCCcEEcCCCChhhhHHHHHH
Q 046626 13 KRYLFVMDDVWNE-DPKVWDELKSLLWGGAKGSKILVTTRSNKVA-SIMGTMRGTGGYKLEGLPYESCLSLFMK 84 (557)
Q Consensus 13 kr~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~-~~~~~~~~~~~~~~~~L~~~~a~~Lf~~ 84 (557)
.+-++|+|++... .....+.+...+.....++++|+||...+-. ..... . ...+.+...+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s-R-~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS-R-CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh-h-ceEEEeCCCCHHHHHHHHHH
Confidence 4557899999543 2222334444454445677899988754311 11100 0 11466666777776655443
No 197
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=26.04 E-value=3e+02 Score=25.38 Aligned_cols=104 Identities=18% Similarity=0.114 Sum_probs=58.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCC--------CCCc-----------EEEEecCChHHHHHhcCCCCCCcEEcCCC
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGG--------AKGS-----------KILVTTRSNKVASIMGTMRGTGGYKLEGL 73 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~--------~~gs-----------rIivTtr~~~v~~~~~~~~~~~~~~~~~L 73 (557)
++-+|.+|.+..-+...-+.+.....++ ++++ -|=.|||...+..-....- .-..+++..
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRF-gi~~~l~~Y 179 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRF-GIVLRLEFY 179 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTS-SEEEE----
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhc-ceecchhcC
Confidence 4557788999766655555555543322 2222 3556888754443222211 114589999
Q ss_pred ChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHH
Q 046626 74 PYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGS 120 (557)
Q Consensus 74 ~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~ 120 (557)
+.+|-.++..+.|-.-+.+ --.+.+.+|+++|.|-|--..-+=+
T Consensus 180 ~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 180 SEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999999998887544332 3356789999999999975544333
No 198
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.76 E-value=44 Score=34.71 Aligned_cols=65 Identities=23% Similarity=0.164 Sum_probs=37.6
Q ss_pred hcCCCcceEeeCCCChhhh---ccccCCCCccCeeeccCCcC-ccccchhhhc--CCcCcEeecCCcCCCcc
Q 046626 317 SKSQFLRVIDLSETAIEVL---SREIGNLKHLRYLDLSDNDK-IKKLPNSICE--LHSLQTLSLGGCRELEE 382 (557)
Q Consensus 317 ~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~-~~~lp~~~~~--l~~L~~L~l~~~~~~~~ 382 (557)
.+.+.+..+.|++|++..+ ..-....|+|+.|+|++|.. +... .++.+ ..-|++|-+.||+....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccc
Confidence 3556677777888776643 22234557788888887721 2221 12333 34567788888775543
No 199
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=25.61 E-value=83 Score=28.45 Aligned_cols=39 Identities=31% Similarity=0.498 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHH
Q 046626 14 RYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKV 55 (557)
Q Consensus 14 r~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v 55 (557)
..+||+|...+-... ++...+-..+.|||||++--..++
T Consensus 120 ~~~iIvDEaQN~t~~---~~k~ilTR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPE---ELKMILTRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp SEEEEE-SGGG--HH---HHHHHHTTB-TT-EEEEEE-----
T ss_pred ceEEEEecccCCCHH---HHHHHHcccCCCcEEEEecCceee
Confidence 459999999665554 444555556679999998755443
No 200
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=25.41 E-value=3.6e+02 Score=25.37 Aligned_cols=108 Identities=17% Similarity=0.119 Sum_probs=60.7
Q ss_pred CCce-EEEEEeCCCCCChhhHHHHHHhcCCCCCCc---EEEEecCCh-------HHHHHhcCCCCCCc-EEcCCCChhhh
Q 046626 11 NGKR-YLFVMDDVWNEDPKVWDELKSLLWGGAKGS---KILVTTRSN-------KVASIMGTMRGTGG-YKLEGLPYESC 78 (557)
Q Consensus 11 ~~kr-~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs---rIivTtr~~-------~v~~~~~~~~~~~~-~~~~~L~~~~a 78 (557)
+++| +.+++|+...-.....+.++-....-..+| +|+..-.-+ .+.+.. .+...+ |++.+++.++.
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~--~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLREL--EQRIDIRIELPPLTEAET 205 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhh--hheEEEEEecCCcChHHH
Confidence 4677 999999995544455555554432111122 244333211 111111 112234 89999999977
Q ss_pred HHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHH
Q 046626 79 LSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGS 120 (557)
Q Consensus 79 ~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~ 120 (557)
-..+.+..-+...+..---.+....+.....|.|.++..+..
T Consensus 206 ~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 777766654443332111134557788889999999877653
No 201
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=21.75 E-value=1.2e+02 Score=27.77 Aligned_cols=105 Identities=12% Similarity=0.212 Sum_probs=51.7
Q ss_pred CceEEEEEeCCCCC----C--hhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcCCCCCCcEEcCCCChhhhHHHHHHH
Q 046626 12 GKRYLFVMDDVWNE----D--PKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGTMRGTGGYKLEGLPYESCLSLFMKC 85 (557)
Q Consensus 12 ~kr~LlVlDdv~~~----~--~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~ 85 (557)
.++-|++||..-.. + ...|. +...+.. ..|+.+|+||-..++...+........+++.....+..-++-..+
T Consensus 108 ~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~~~~Y 185 (222)
T cd03285 108 TENSLIIIDELGRGTSTYDGFGLAWA-IAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLTMLY 185 (222)
T ss_pred CCCeEEEEecCcCCCChHHHHHHHHH-HHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcEeEEE
Confidence 56789999998221 1 11122 2233322 247889999988777665432221112223221111001111111
Q ss_pred hccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhc
Q 046626 86 AFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLY 123 (557)
Q Consensus 86 a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~ 123 (557)
-...+... ...|-++|+.+ |+|-.+.--|..+.
T Consensus 186 ~l~~G~~~----~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 186 KVEKGACD----QSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred EEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 11112111 23467777776 88988877776665
No 202
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=21.71 E-value=6e+02 Score=23.79 Aligned_cols=75 Identities=8% Similarity=0.084 Sum_probs=38.6
Q ss_pred eEEEEEeCCCCCC--------hhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhc-----CCCCCCcEEcCCCChhhhHH
Q 046626 14 RYLFVMDDVWNED--------PKVWDELKSLLWGGAKGSKILVTTRSNKVASIMG-----TMRGTGGYKLEGLPYESCLS 80 (557)
Q Consensus 14 r~LlVlDdv~~~~--------~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~-----~~~~~~~~~~~~L~~~~a~~ 80 (557)
.-+|++|++..-. ....+.+............+|+++...+...... ...-...+++..++.++-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 3588999994211 1122334444433332335556654433211000 00001257888888888888
Q ss_pred HHHHHhcc
Q 046626 81 LFMKCAFK 88 (557)
Q Consensus 81 Lf~~~a~~ 88 (557)
++.+.+-.
T Consensus 186 Il~~~~~~ 193 (261)
T TIGR02881 186 IAERMVKE 193 (261)
T ss_pred HHHHHHHH
Confidence 88877643
No 203
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.11 E-value=7.5e+02 Score=23.80 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=35.6
Q ss_pred cEEcCCCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhH
Q 046626 67 GYKLEGLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLA 114 (557)
Q Consensus 67 ~~~~~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPla 114 (557)
.+++..-+++|....++..+-+.+-... ++++++||++++|.-.-
T Consensus 180 ~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRr 224 (351)
T KOG2035|consen 180 FIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRR 224 (351)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHH
Confidence 5889999999999999988765554432 77899999999986443
No 204
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=20.58 E-value=1.7e+02 Score=20.65 Aligned_cols=32 Identities=28% Similarity=0.237 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHhhcCCCCh
Q 046626 97 LVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDE 128 (557)
Q Consensus 97 ~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~ 128 (557)
+..+.-.|++.|+|++--+.++-+.|+.+++-
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTDF 34 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKTDF 34 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCce
Confidence 34566789999999999999999999987554
No 205
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=20.17 E-value=7.2e+02 Score=23.27 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=29.5
Q ss_pred CCceEEEEEeCCC-CCChhhHHHHHHhcCCC---CCCc-EEEEecCChHHHH
Q 046626 11 NGKRYLFVMDDVW-NEDPKVWDELKSLLWGG---AKGS-KILVTTRSNKVAS 57 (557)
Q Consensus 11 ~~kr~LlVlDdv~-~~~~~~~~~l~~~~~~~---~~gs-rIivTtr~~~v~~ 57 (557)
...||+|.+||+. +.....+..++..+..+ .|.. .|.+||--+++..
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 3569999999993 44456677788877644 2333 4445555455543
Done!