Query 046626
Match_columns 557
No_of_seqs 280 out of 3470
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-32 5.6E-37 288.3 13.8 226 2-256 231-472 (549)
2 1vt4_I APAF-1 related killer D 99.9 3.7E-25 1.3E-29 236.1 13.1 196 3-249 231-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 1.8E-24 6E-29 251.0 14.5 218 2-255 223-452 (1249)
4 4fcg_A Uncharacterized protein 99.9 4.9E-24 1.7E-28 209.4 12.8 223 291-524 79-310 (328)
5 4fcg_A Uncharacterized protein 99.9 6.5E-24 2.2E-28 208.6 13.0 222 318-556 79-310 (328)
6 3rgz_A Protein brassinosteroid 99.9 1.1E-23 3.8E-28 230.9 15.6 234 314-557 412-714 (768)
7 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-23 8.2E-28 203.3 13.9 251 268-529 50-305 (313)
8 4eco_A Uncharacterized protein 99.9 8.9E-24 3.1E-28 226.5 11.1 208 312-525 198-443 (636)
9 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-23 4.7E-28 205.0 10.2 248 293-557 50-301 (313)
10 2id5_A Lingo-1, leucine rich r 99.9 1.2E-22 4E-27 210.9 16.8 278 266-557 30-330 (477)
11 3v47_A TOLL-like receptor 5B a 99.9 1.7E-22 5.9E-27 208.5 17.6 275 266-557 28-405 (455)
12 4ecn_A Leucine-rich repeat pro 99.9 4.5E-22 1.5E-26 217.2 19.5 281 267-557 490-816 (876)
13 4eco_A Uncharacterized protein 99.9 3.8E-22 1.3E-26 213.9 17.2 282 267-557 248-576 (636)
14 3rgz_A Protein brassinosteroid 99.9 1.3E-22 4.4E-27 222.5 11.9 273 268-557 269-548 (768)
15 1xku_A Decorin; proteoglycan, 99.9 8.2E-21 2.8E-25 187.1 18.9 271 266-557 50-329 (330)
16 3t6q_A CD180 antigen; protein- 99.9 3.2E-21 1.1E-25 206.5 17.2 273 268-557 278-557 (606)
17 4ecn_A Leucine-rich repeat pro 99.9 6.3E-22 2.2E-26 216.1 11.1 238 312-557 440-738 (876)
18 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-20 6.5E-25 184.6 18.3 269 267-557 53-330 (332)
19 3j0a_A TOLL-like receptor 5; m 99.8 8.6E-21 2.9E-25 210.2 17.1 276 266-557 22-372 (844)
20 4fmz_A Internalin; leucine ric 99.8 5.9E-20 2E-24 182.3 21.3 256 268-557 66-321 (347)
21 2id5_A Lingo-1, leucine rich r 99.8 5.2E-21 1.8E-25 198.5 13.9 250 292-557 31-306 (477)
22 3v47_A TOLL-like receptor 5B a 99.8 7.5E-21 2.6E-25 196.1 15.0 132 292-426 29-166 (455)
23 1z6t_A APAF-1, apoptotic prote 99.8 5.5E-21 1.9E-25 203.6 14.3 213 3-252 224-449 (591)
24 3zyi_A Leucine-rich repeat-con 99.8 2.1E-20 7E-25 192.5 17.4 223 320-557 75-300 (452)
25 3t6q_A CD180 antigen; protein- 99.8 1.6E-20 5.5E-25 201.0 16.5 270 269-557 255-533 (606)
26 4fmz_A Internalin; leucine ric 99.8 6.4E-20 2.2E-24 182.0 19.5 258 266-557 86-343 (347)
27 2z66_A Variable lymphocyte rec 99.8 2E-20 6.9E-25 182.2 15.4 222 293-525 28-258 (306)
28 3zyj_A Leucine-rich repeat-con 99.8 4.1E-20 1.4E-24 189.5 17.9 220 321-557 65-289 (440)
29 2z7x_B TOLL-like receptor 1, v 99.8 7.6E-21 2.6E-25 199.6 12.6 128 267-403 20-150 (520)
30 1ziw_A TOLL-like receptor 3; i 99.8 9.2E-21 3.1E-25 205.7 13.6 284 266-557 23-339 (680)
31 3o6n_A APL1; leucine-rich repe 99.8 2.1E-20 7.1E-25 188.7 14.9 149 268-423 45-195 (390)
32 2ft3_A Biglycan; proteoglycan, 99.8 7.2E-20 2.5E-24 180.4 18.3 259 270-557 35-304 (332)
33 1xku_A Decorin; proteoglycan, 99.8 6.4E-20 2.2E-24 180.7 16.7 241 293-557 52-303 (330)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.5E-19 5E-24 191.5 20.2 105 267-378 51-157 (562)
35 3oja_B Anopheles plasmodium-re 99.8 3.5E-20 1.2E-24 197.4 15.2 242 268-525 51-311 (597)
36 3o6n_A APL1; leucine-rich repe 99.8 7.6E-20 2.6E-24 184.5 15.5 261 268-557 69-349 (390)
37 3j0a_A TOLL-like receptor 5; m 99.8 1.6E-19 5.4E-24 200.1 18.7 254 265-526 45-373 (844)
38 2z63_A TOLL-like receptor 4, v 99.8 1E-19 3.5E-24 193.2 16.4 107 268-378 52-160 (570)
39 3bz5_A Internalin-J, INLJ; leu 99.8 5E-19 1.7E-23 181.6 19.8 159 268-448 64-222 (457)
40 2z66_A Variable lymphocyte rec 99.8 4.5E-19 1.5E-23 172.6 18.3 232 266-505 26-262 (306)
41 3vq2_A TLR4, TOLL-like recepto 99.8 7.2E-20 2.5E-24 195.9 13.7 265 268-557 285-555 (606)
42 2z81_A CD282 antigen, TOLL-lik 99.8 1.9E-20 6.5E-25 197.9 9.1 153 267-424 25-182 (549)
43 3vq2_A TLR4, TOLL-like recepto 99.8 2.6E-19 8.9E-24 191.6 17.6 243 268-526 307-556 (606)
44 2z80_A TOLL-like receptor 2, v 99.8 3.3E-20 1.1E-24 184.5 9.5 251 267-526 51-312 (353)
45 2z7x_B TOLL-like receptor 1, v 99.8 2.7E-19 9.1E-24 187.8 16.7 154 388-557 321-478 (520)
46 3oja_B Anopheles plasmodium-re 99.8 1.9E-19 6.7E-24 191.7 14.2 262 267-557 74-355 (597)
47 1ozn_A Reticulon 4 receptor; N 99.8 4.7E-19 1.6E-23 170.6 15.5 200 319-525 31-235 (285)
48 2z80_A TOLL-like receptor 2, v 99.8 4.5E-20 1.6E-24 183.5 8.5 248 293-557 52-311 (353)
49 3zyi_A Leucine-rich repeat-con 99.8 9E-19 3.1E-23 180.2 18.0 224 268-526 75-301 (452)
50 3zyj_A Leucine-rich repeat-con 99.8 9.9E-19 3.4E-23 179.2 18.2 224 267-526 63-290 (440)
51 2z63_A TOLL-like receptor 4, v 99.8 2.8E-19 9.7E-24 189.9 14.3 221 317-557 279-528 (570)
52 3bz5_A Internalin-J, INLJ; leu 99.8 2.2E-18 7.4E-23 176.8 20.1 244 268-557 42-296 (457)
53 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.6E-19 1.9E-23 187.0 15.9 144 271-426 34-181 (562)
54 1o6v_A Internalin A; bacterial 99.8 1.6E-18 5.4E-23 179.1 18.8 255 267-557 67-341 (466)
55 2z81_A CD282 antigen, TOLL-lik 99.8 3.1E-19 1.1E-23 188.6 12.9 136 265-404 47-185 (549)
56 1o6v_A Internalin A; bacterial 99.8 3E-18 1E-22 177.0 19.4 147 387-557 239-385 (466)
57 1wwl_A Monocyte differentiatio 99.8 5.6E-20 1.9E-24 179.4 4.7 199 318-557 93-306 (312)
58 1ozn_A Reticulon 4 receptor; N 99.8 1.7E-18 5.7E-23 166.7 15.0 204 292-505 31-239 (285)
59 4g8a_A TOLL-like receptor 4; l 99.8 8.5E-19 2.9E-23 188.6 14.1 135 265-404 49-186 (635)
60 1ziw_A TOLL-like receptor 3; i 99.8 1.4E-18 4.7E-23 188.5 15.8 133 268-404 49-184 (680)
61 2z62_A TOLL-like receptor 4, v 99.8 8E-18 2.7E-22 161.2 15.2 203 293-526 28-235 (276)
62 1p9a_G Platelet glycoprotein I 99.8 1.2E-17 4.2E-22 160.7 16.5 199 289-526 6-206 (290)
63 3oja_A Leucine-rich immune mol 99.7 3.7E-18 1.3E-22 176.7 12.0 213 294-527 35-249 (487)
64 3o53_A Protein LRIM1, AGAP0063 99.7 4.3E-18 1.5E-22 166.4 11.5 213 292-526 33-248 (317)
65 2xwt_C Thyrotropin receptor; s 99.7 4.8E-18 1.6E-22 159.0 11.2 197 321-526 32-237 (239)
66 2o6q_A Variable lymphocyte rec 99.7 2.9E-17 9.9E-22 156.6 16.6 177 320-526 37-216 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.7 7.1E-18 2.4E-22 164.8 12.3 224 309-557 23-247 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.7 1.1E-16 3.9E-21 169.0 21.2 235 267-557 60-294 (622)
69 3oja_A Leucine-rich immune mol 99.7 6.1E-18 2.1E-22 175.1 8.4 235 267-523 33-270 (487)
70 1wwl_A Monocyte differentiatio 99.7 1.5E-17 5E-22 162.2 10.3 199 291-526 93-307 (312)
71 1h6u_A Internalin H; cell adhe 99.7 3.6E-17 1.2E-21 159.0 13.0 192 289-526 37-228 (308)
72 4glp_A Monocyte differentiatio 99.7 1E-16 3.5E-21 156.1 16.2 223 294-525 65-304 (310)
73 2ast_B S-phase kinase-associat 99.7 2E-18 6.9E-23 170.4 3.5 219 269-501 48-282 (336)
74 4g8a_A TOLL-like receptor 4; l 99.7 3E-16 1E-20 168.7 20.4 113 262-379 70-185 (635)
75 2z62_A TOLL-like receptor 4, v 99.7 9.3E-17 3.2E-21 153.7 14.2 197 320-557 28-234 (276)
76 3rfs_A Internalin B, repeat mo 99.7 2.4E-16 8E-21 150.4 16.2 177 318-526 39-216 (272)
77 1jl5_A Outer protein YOPM; leu 99.7 4.9E-16 1.7E-20 159.1 19.5 248 268-557 131-406 (454)
78 3rfs_A Internalin B, repeat mo 99.7 1.2E-16 4E-21 152.6 13.2 186 316-516 59-247 (272)
79 3m19_A Variable lymphocyte rec 99.7 5E-16 1.7E-20 146.3 16.4 175 320-526 14-190 (251)
80 2o6q_A Variable lymphocyte rec 99.7 4.6E-16 1.6E-20 148.3 15.7 197 271-504 19-218 (270)
81 1jl5_A Outer protein YOPM; leu 99.7 1E-15 3.4E-20 156.8 18.9 242 268-557 111-367 (454)
82 1p9a_G Platelet glycoprotein I 99.7 5.2E-16 1.8E-20 149.3 15.5 200 316-557 6-205 (290)
83 3g06_A SSPH2 (leucine-rich rep 99.7 2.1E-15 7.3E-20 159.3 20.1 218 266-527 79-296 (622)
84 4glp_A Monocyte differentiatio 99.7 1.4E-16 4.8E-21 155.1 10.1 222 320-557 64-304 (310)
85 2ast_B S-phase kinase-associat 99.7 1E-17 3.6E-22 165.3 1.7 226 292-525 46-282 (336)
86 1h6u_A Internalin H; cell adhe 99.7 8.6E-16 2.9E-20 149.2 14.1 194 268-509 41-234 (308)
87 2ca6_A RAN GTPase-activating p 99.6 1.9E-17 6.6E-22 166.6 1.5 238 288-526 27-314 (386)
88 4ay9_X Follicle-stimulating ho 99.6 4.1E-16 1.4E-20 154.5 11.0 220 320-556 30-255 (350)
89 2xwt_C Thyrotropin receptor; s 99.6 8.1E-16 2.8E-20 143.7 10.8 183 331-525 22-215 (239)
90 2ca6_A RAN GTPase-activating p 99.6 1.2E-17 4.2E-22 168.1 -2.2 238 310-557 22-313 (386)
91 1z7x_W Ribonuclease inhibitor; 99.6 1.2E-17 4.3E-22 172.3 -2.6 180 269-449 86-295 (461)
92 1z7x_W Ribonuclease inhibitor; 99.6 1.2E-17 4E-22 172.5 -3.7 156 268-424 3-180 (461)
93 3cvr_A Invasion plasmid antige 99.6 3.7E-15 1.3E-19 155.5 14.9 177 320-527 59-242 (571)
94 4ezg_A Putative uncharacterize 99.6 2E-15 6.8E-20 136.5 9.9 148 319-525 43-191 (197)
95 3m19_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 136.9 15.5 157 320-506 35-194 (251)
96 1h6t_A Internalin B; cell adhe 99.6 3.7E-15 1.3E-19 143.4 11.1 171 290-504 43-213 (291)
97 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.8E-19 143.5 14.3 216 323-555 12-234 (350)
98 1m9s_A Internalin B; cell inva 99.6 2.5E-14 8.4E-19 151.0 14.8 99 319-423 42-140 (605)
99 3goz_A Leucine-rich repeat-con 99.5 2E-15 6.9E-20 150.3 4.8 239 285-526 14-295 (362)
100 3goz_A Leucine-rich repeat-con 99.5 1.4E-15 4.7E-20 151.5 3.5 245 310-557 12-294 (362)
101 3e6j_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 129.4 14.6 150 322-504 21-172 (229)
102 2v9t_B SLIT homolog 2 protein 99.5 7.8E-14 2.7E-18 128.2 14.3 99 323-424 14-114 (220)
103 1h6t_A Internalin B; cell adhe 99.5 5.3E-14 1.8E-18 135.3 13.3 168 318-526 44-211 (291)
104 2o6s_A Variable lymphocyte rec 99.5 6E-14 2.1E-18 127.9 11.8 160 320-516 28-190 (208)
105 1dce_A Protein (RAB geranylger 99.5 1.8E-16 6E-21 166.4 -5.9 199 317-554 346-567 (567)
106 1m9s_A Internalin B; cell inva 99.5 3.2E-14 1.1E-18 150.1 11.0 186 322-526 23-208 (605)
107 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.3E-18 126.8 13.7 99 323-424 14-115 (220)
108 1xeu_A Internalin C; cellular 99.5 1.2E-14 4.1E-19 137.6 6.8 100 317-423 38-137 (263)
109 4b8c_D Glucose-repressible alc 99.5 7.9E-15 2.7E-19 158.7 5.8 120 310-431 214-333 (727)
110 3cvr_A Invasion plasmid antige 99.5 2.5E-14 8.7E-19 149.2 8.0 196 269-516 60-255 (571)
111 4ezg_A Putative uncharacterize 99.5 3.4E-13 1.2E-17 121.7 14.1 148 268-425 44-192 (197)
112 2v9t_B SLIT homolog 2 protein 99.5 3.6E-13 1.2E-17 123.7 13.5 148 346-526 14-163 (220)
113 3ogk_B Coronatine-insensitive 99.5 4.7E-15 1.6E-19 158.1 0.8 155 270-425 140-304 (592)
114 2xot_A Amphoterin-induced prot 99.5 1.4E-13 4.9E-18 136.7 10.0 101 322-423 41-145 (361)
115 3ogk_B Coronatine-insensitive 99.4 6.7E-15 2.3E-19 156.8 -0.6 278 268-557 164-498 (592)
116 1xeu_A Internalin C; cellular 99.4 3E-13 1E-17 127.9 10.6 96 322-424 21-116 (263)
117 2o6s_A Variable lymphocyte rec 99.4 2.2E-13 7.6E-18 124.1 8.9 131 292-426 27-160 (208)
118 3e6j_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 120.7 13.6 149 345-526 21-170 (229)
119 1dce_A Protein (RAB geranylger 99.4 1.7E-14 5.9E-19 151.3 0.6 193 290-522 346-567 (567)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 1.6E-12 5.5E-17 119.4 13.7 149 345-526 13-164 (220)
121 2ell_A Acidic leucine-rich nuc 99.4 5.9E-13 2E-17 116.8 8.6 102 320-423 24-129 (168)
122 4b8c_D Glucose-repressible alc 99.4 2.2E-13 7.7E-18 147.4 4.4 198 322-557 203-401 (727)
123 2ell_A Acidic leucine-rich nuc 99.4 1.1E-12 3.6E-17 115.2 7.8 131 292-426 23-159 (168)
124 2je0_A Acidic leucine-rich nuc 99.3 1.2E-12 4.1E-17 112.3 5.8 105 316-422 38-148 (149)
125 2p1m_B Transport inhibitor res 99.3 1.8E-13 6.3E-18 145.8 0.5 212 269-482 157-419 (594)
126 2xot_A Amphoterin-induced prot 99.3 4.5E-12 1.5E-16 125.9 10.5 134 293-431 39-179 (361)
127 2je0_A Acidic leucine-rich nuc 99.3 1.1E-12 3.8E-17 112.5 5.1 111 318-431 15-129 (149)
128 1a9n_A U2A', U2A'; complex (nu 99.3 3.5E-12 1.2E-16 112.8 7.9 131 289-426 15-152 (176)
129 2p1m_B Transport inhibitor res 99.3 7.6E-14 2.6E-18 148.7 -5.5 281 268-556 105-441 (594)
130 1w8a_A SLIT protein; signaling 99.3 1.3E-11 4.5E-16 110.6 9.7 99 323-424 11-112 (192)
131 2wfh_A SLIT homolog 2 protein 99.3 1.9E-11 6.4E-16 109.6 10.3 105 320-425 31-137 (193)
132 1w8a_A SLIT protein; signaling 99.2 1.4E-11 4.8E-16 110.5 8.9 106 321-426 30-138 (192)
133 2wfh_A SLIT homolog 2 protein 99.2 3E-11 1E-15 108.2 10.4 122 323-448 13-136 (193)
134 1a9n_A U2A', U2A'; complex (nu 99.2 6.5E-12 2.2E-16 111.0 5.7 127 316-447 15-149 (176)
135 2o6r_A Variable lymphocyte rec 99.1 3.1E-10 1.1E-14 100.2 11.7 99 322-424 9-110 (177)
136 3g39_A Variable lymphocyte rec 99.1 2.1E-10 7.1E-15 100.5 9.9 100 322-425 11-113 (170)
137 2r9u_A Variable lymphocyte rec 99.1 2.2E-10 7.6E-15 100.7 9.9 100 322-425 14-116 (174)
138 1ds9_A Outer arm dynein; leuci 99.1 1.2E-12 4.1E-17 118.2 -5.5 111 312-426 40-152 (198)
139 2o6r_A Variable lymphocyte rec 99.1 4.8E-10 1.7E-14 99.0 10.6 106 320-426 28-136 (177)
140 1ds9_A Outer arm dynein; leuci 99.1 9.8E-13 3.4E-17 118.8 -7.2 104 316-423 14-124 (198)
141 3sb4_A Hypothetical leucine ri 98.9 9.1E-09 3.1E-13 100.6 12.0 119 292-420 24-154 (329)
142 2ifg_A High affinity nerve gro 98.8 9.6E-09 3.3E-13 101.2 9.7 99 324-424 12-113 (347)
143 2r9u_A Variable lymphocyte rec 98.7 2.2E-08 7.5E-13 87.8 8.4 89 320-410 33-124 (174)
144 3g39_A Variable lymphocyte rec 98.7 2.8E-08 9.7E-13 86.8 8.5 85 320-406 30-117 (170)
145 3sb4_A Hypothetical leucine ri 98.7 3.3E-08 1.1E-12 96.5 9.3 55 319-375 100-156 (329)
146 4fdw_A Leucine rich hypothetic 98.5 1E-06 3.5E-11 88.0 14.6 219 289-525 132-355 (401)
147 2ifg_A High affinity nerve gro 98.5 1.5E-07 5.2E-12 92.5 7.5 91 312-404 24-116 (347)
148 2ra8_A Uncharacterized protein 98.5 4.8E-08 1.6E-12 96.0 3.1 147 359-526 164-318 (362)
149 4fdw_A Leucine rich hypothetic 98.4 3.3E-06 1.1E-10 84.4 14.5 219 289-524 154-379 (401)
150 3un9_A NLR family member X1; l 98.4 8.4E-08 2.9E-12 95.0 2.8 155 268-425 72-250 (372)
151 3un9_A NLR family member X1; l 98.2 6.6E-07 2.2E-11 88.6 4.8 136 268-404 101-252 (372)
152 2ra8_A Uncharacterized protein 98.2 1.8E-07 6.2E-12 91.9 -1.0 144 383-557 164-317 (362)
153 1io0_A Tropomodulin; LRR prote 98.1 2.1E-06 7.1E-11 75.9 5.8 114 310-424 26-161 (185)
154 1io0_A Tropomodulin; LRR prote 98.0 7.5E-06 2.6E-10 72.3 5.5 118 286-404 29-164 (185)
155 2qen_A Walker-type ATPase; unk 97.9 0.00022 7.5E-09 69.7 16.5 187 14-224 129-333 (350)
156 2fna_A Conserved hypothetical 97.9 0.00023 7.8E-09 69.8 15.8 187 13-224 137-341 (357)
157 3rw6_A Nuclear RNA export fact 97.8 1.1E-05 3.8E-10 75.0 4.7 62 317-380 167-233 (267)
158 3e4g_A ATP synthase subunit S, 97.8 6.7E-06 2.3E-10 70.8 2.8 89 320-430 61-155 (176)
159 3rw6_A Nuclear RNA export fact 97.8 1.1E-05 3.9E-10 74.9 3.5 94 325-421 148-258 (267)
160 1w5s_A Origin recognition comp 97.7 0.00043 1.5E-08 69.4 14.0 207 4-225 127-372 (412)
161 4gt6_A Cell surface protein; l 97.6 0.00055 1.9E-08 68.2 14.0 108 287-399 81-190 (394)
162 3e4g_A ATP synthase subunit S, 97.5 4.2E-05 1.4E-09 65.8 3.6 88 292-382 60-154 (176)
163 4fs7_A Uncharacterized protein 97.5 0.0005 1.7E-08 68.5 12.0 56 465-524 320-375 (394)
164 4fs7_A Uncharacterized protein 97.5 0.00093 3.2E-08 66.5 13.9 195 315-524 157-352 (394)
165 1njg_A DNA polymerase III subu 97.4 0.00056 1.9E-08 62.8 10.1 107 11-122 124-231 (250)
166 4h09_A Hypothetical leucine ri 97.3 0.0041 1.4E-07 61.4 14.8 57 464-523 262-318 (379)
167 1hqc_A RUVB; extended AAA-ATPa 96.8 0.013 4.4E-07 56.3 12.8 193 13-223 90-324 (324)
168 4gt6_A Cell surface protein; l 96.7 0.038 1.3E-06 54.7 15.5 107 263-376 82-191 (394)
169 2chg_A Replication factor C sm 96.5 0.013 4.4E-07 52.6 9.9 106 12-122 101-207 (226)
170 2v1u_A Cell division control p 96.4 0.058 2E-06 53.0 15.2 198 4-224 119-351 (387)
171 2qby_B CDC6 homolog 3, cell di 96.2 0.2 7E-06 49.0 17.5 200 3-225 123-340 (384)
172 1sxj_B Activator 1 37 kDa subu 95.5 0.058 2E-06 51.6 10.1 105 11-120 105-211 (323)
173 1fnn_A CDC6P, cell division co 95.3 0.18 6.2E-06 49.5 13.1 199 12-226 124-353 (389)
174 3rfe_A Platelet glycoprotein I 94.5 0.048 1.7E-06 44.3 5.2 53 324-379 12-67 (130)
175 3rfe_A Platelet glycoprotein I 94.2 0.044 1.5E-06 44.6 4.3 46 477-526 19-66 (130)
176 1pgv_A TMD-1, tropomodulin TMD 94.0 0.059 2E-06 47.1 5.1 90 311-401 32-136 (197)
177 1iqp_A RFCS; clamp loader, ext 93.4 0.33 1.1E-05 46.2 9.8 105 12-122 109-215 (327)
178 2qby_A CDC6 homolog 1, cell di 93.0 0.55 1.9E-05 45.8 11.0 201 5-224 118-348 (386)
179 1pgv_A TMD-1, tropomodulin TMD 92.6 0.18 6.3E-06 44.0 6.0 114 287-401 35-167 (197)
180 4h09_A Hypothetical leucine ri 92.2 0.65 2.2E-05 45.3 10.2 80 339-422 236-318 (379)
181 1jr3_A DNA polymerase III subu 91.9 0.84 2.9E-05 44.3 10.7 103 12-119 118-221 (373)
182 2chq_A Replication factor C sm 90.0 1.6 5.6E-05 41.1 10.4 103 12-119 101-204 (319)
183 3bos_A Putative DNA replicatio 87.7 0.87 3E-05 40.9 6.3 102 13-120 104-218 (242)
184 2z4s_A Chromosomal replication 85.6 2.9 0.0001 41.7 9.3 105 8-118 189-305 (440)
185 1sxj_E Activator 1 40 kDa subu 82.2 4.5 0.00015 38.7 8.9 104 13-120 134-238 (354)
186 1a5t_A Delta prime, HOLB; zinc 81.8 6.2 0.00021 37.5 9.6 97 12-118 107-204 (334)
187 1sxj_D Activator 1 41 kDa subu 80.2 12 0.00039 35.7 11.1 100 12-120 132-236 (353)
188 3pfi_A Holliday junction ATP-d 79.5 27 0.00092 32.9 13.4 101 12-120 105-228 (338)
189 1d2n_A N-ethylmaleimide-sensit 75.4 25 0.00085 32.0 11.4 96 7-110 118-228 (272)
190 1jr3_D DNA polymerase III, del 73.9 18 0.00063 34.2 10.4 102 11-117 74-183 (343)
191 3h4m_A Proteasome-activating n 63.3 16 0.00056 33.4 7.3 71 42-116 155-228 (285)
192 3syl_A Protein CBBX; photosynt 60.9 25 0.00086 32.5 8.2 72 14-90 131-221 (309)
193 1sxj_A Activator 1 95 kDa subu 60.1 17 0.00057 37.0 7.2 101 12-119 147-253 (516)
194 2qz4_A Paraplegin; AAA+, SPG7, 59.8 66 0.0023 28.6 10.7 105 11-117 96-220 (262)
195 1l8q_A Chromosomal replication 59.6 26 0.0009 32.8 8.1 93 14-114 99-203 (324)
196 3u61_B DNA polymerase accessor 58.8 30 0.001 32.3 8.4 96 13-116 105-213 (324)
197 1g5t_A COB(I)alamin adenosyltr 57.4 7.5 0.00026 33.6 3.4 50 4-53 110-163 (196)
198 3uk6_A RUVB-like 2; hexameric 55.1 55 0.0019 31.1 9.7 93 15-117 191-301 (368)
199 2qp9_X Vacuolar protein sortin 44.0 2.1E+02 0.0072 26.9 12.3 100 12-119 142-261 (355)
200 3pvs_A Replication-associated 43.3 50 0.0017 32.7 7.3 105 11-119 104-215 (447)
201 1sxj_C Activator 1 40 kDa subu 43.1 1.2E+02 0.004 28.4 9.8 99 12-115 109-208 (340)
202 3vfd_A Spastin; ATPase, microt 42.1 1.6E+02 0.0054 28.2 10.7 49 67-118 276-325 (389)
203 3d8b_A Fidgetin-like protein 1 39.6 1.1E+02 0.0038 29.0 9.0 50 67-119 245-295 (357)
204 3eie_A Vacuolar protein sortin 35.6 2.7E+02 0.0091 25.7 12.4 99 12-118 109-227 (322)
205 2c9o_A RUVB-like 1; hexameric 30.6 1.9E+02 0.0064 28.5 9.3 93 16-118 298-409 (456)
206 2gno_A DNA polymerase III, gam 28.7 64 0.0022 30.0 5.1 71 12-86 81-152 (305)
207 3ec2_A DNA replication protein 27.9 31 0.0011 28.8 2.6 39 14-52 101-142 (180)
208 2zan_A Vacuolar protein sortin 25.6 4.1E+02 0.014 25.9 10.7 103 12-118 226-344 (444)
209 3te6_A Regulatory protein SIR3 24.6 2.9E+02 0.0099 25.6 8.8 57 67-123 192-284 (318)
210 2vda_B Maltoporin; sugar trans 23.9 58 0.002 17.1 2.0 18 108-125 8-25 (28)
211 3cf0_A Transitional endoplasmi 21.9 3.5E+02 0.012 24.5 8.9 100 11-114 106-223 (301)
212 3n70_A Transport activator; si 21.8 67 0.0023 25.6 3.4 39 14-52 77-115 (145)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.98 E-value=1.6e-32 Score=288.28 Aligned_cols=226 Identities=17% Similarity=0.280 Sum_probs=176.7
Q ss_pred HHHHHHHHcCCc-eEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcCCCCCCcEEcCCCChhhhHH
Q 046626 2 LQQIMRSCLNGK-RYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGTMRGTGGYKLEGLPYESCLS 80 (557)
Q Consensus 2 l~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~~~~~~~~~~~~L~~~~a~~ 80 (557)
+++.+++.|++| ||||||||||+.+...|.. .+|||||||||++.++..++.. ...|++++|+.++||+
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~ 300 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISNAASQT--CEFIEVTSLEIDECYD 300 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGGGCCSC--EEEEECCCCCHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHHHcCCC--CeEEECCCCCHHHHHH
Confidence 467899999996 9999999998753222332 1799999999999999876532 1379999999999999
Q ss_pred HHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHHHHH--HhhhccccccccCCchhhHhhccc
Q 046626 81 LFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYWEYV--RDNEIWKLEQKENDILPALKLSYD 158 (557)
Q Consensus 81 Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w~~l--~~~~~~~~~~~~~~i~~~L~~sy~ 158 (557)
||.++||.... .+.+.+++++|+++|+|+||||+++|+.++.+ . |+.+ .....+. .....+...+.+||+
T Consensus 301 Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~~~l~~~l~~--~~~~~i~~~l~~Sy~ 372 (549)
T 2a5y_B 301 FLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKMAQLNNKLES--RGLVGVECITPYSYK 372 (549)
T ss_dssp HHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHHHHHHHHHHH--HCSSTTCCCSSSSSS
T ss_pred HHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHHHHhHHHhhc--ccHHHHHHHHhcccc
Confidence 99999986532 36788899999999999999999999999865 2 3333 2211111 135678899999999
Q ss_pred CCChhhHHHhh-----------hhccCCCCcccChHHHHHHHHHc--CCccCCCCCCChHhHHHHHHHHHHhCCCceecc
Q 046626 159 QLPPHLKQCFA-----------YCSIFPKDYDFDSVLLIRFWMAH--GLLQSPNENEEPENIGMRYLNELLSRSFFQDFS 225 (557)
Q Consensus 159 ~L~~~~k~~fl-----------~~a~fp~~~~~~~~~li~~w~~~--g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~~ 225 (557)
.|++..|.||+ |||+||+++.++ ++.|+++ ||+.........++.+. ++++|+++++++...
T Consensus 373 ~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~ 447 (549)
T 2a5y_B 373 SLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGK 447 (549)
T ss_dssp SHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEE
T ss_pred cccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEec
Confidence 99999999999 999999999988 7999999 99987654556777777 999999999998764
Q ss_pred CCCCCCCcceeEEEEcHHHHHHHHHHhcCCe
Q 046626 226 NGMLPEGFEIFFFKMHDLMHDLAQLVAKGEF 256 (557)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~i~~l~~~~~~~~~ 256 (557)
.+ ....|+|||+++++|+.++..++
T Consensus 448 ~~------~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 448 RM------PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CS------SSCEEECCHHHHHHHHTTSCTHH
T ss_pred CC------CceEEEeChHHHHHHHHHHHHHH
Confidence 32 34589999999999998887764
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.92 E-value=3.7e-25 Score=236.05 Aligned_cols=196 Identities=20% Similarity=0.277 Sum_probs=154.9
Q ss_pred HHHHHHHc---CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcCCCCCCcEEcC------CC
Q 046626 3 QQIMRSCL---NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGTMRGTGGYKLE------GL 73 (557)
Q Consensus 3 ~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~~~~~~~~~~~------~L 73 (557)
++.+++.| .+||+||||||||+ ...|+.+ + +|||||||||++.++..+.... .|+++ +|
T Consensus 231 ~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd~~Va~~l~g~~---vy~LeL~d~dL~L 298 (1221)
T 1vt4_I 231 QAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRFKQVTDFLSAAT---TTHISLDHHSMTL 298 (1221)
T ss_dssp HHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSCSHHHHHHHHHS---SCEEEECSSSSCC
T ss_pred HHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccChHHHHhcCCCe---EEEecCccccCCc
Confidence 44566655 78999999999986 3556543 2 6999999999999986554333 57777 99
Q ss_pred ChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCC-ChHHHHHHHhhhccccccccCCchhh
Q 046626 74 PYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGST-DEHYWEYVRDNEIWKLEQKENDILPA 152 (557)
Q Consensus 74 ~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~-~~~~w~~l~~~~~~~~~~~~~~i~~~ 152 (557)
+.+|||+||++.. ... ..+++.++ |+|+||||+++|+.|+++. ....|+.. ....+...
T Consensus 299 S~eEA~eLF~~~~-g~~------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aa 358 (1221)
T 1vt4_I 299 TPDEVKSLLLKYL-DCR------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTI 358 (1221)
T ss_dssp CHHHHHHHHHHHH-CCC------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHH
T ss_pred CHHHHHHHHHHHc-CCC------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHH
Confidence 9999999999984 221 12233343 9999999999999999874 56677642 23568899
Q ss_pred HhhcccCCChhh-HHHhhhhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCceeccCCCCCC
Q 046626 153 LKLSYDQLPPHL-KQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQDFSNGMLPE 231 (557)
Q Consensus 153 L~~sy~~L~~~~-k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~~~~~~~~ 231 (557)
+++||+.|++.+ |.||++||+||+++.++...++..|+++| ++.+..++++|+++++++...
T Consensus 359 LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~------ 421 (1221)
T 1vt4_I 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQP------ 421 (1221)
T ss_dssp HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCS------
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeC------
Confidence 999999999999 99999999999999999999999999876 134788999999999998732
Q ss_pred CcceeEEEEcHHHHHHHH
Q 046626 232 GFEIFFFKMHDLMHDLAQ 249 (557)
Q Consensus 232 ~~~~~~~~~h~~i~~l~~ 249 (557)
....++|||++++++.
T Consensus 422 --~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 422 --KESTISIPSIYLELKV 437 (1221)
T ss_dssp --SSSEEBCCCHHHHHHH
T ss_pred --CCCEEEehHHHHHHhc
Confidence 1247999999998663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=1.8e-24 Score=251.04 Aligned_cols=218 Identities=23% Similarity=0.337 Sum_probs=170.6
Q ss_pred HHHHHHHHcCCc--eEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHh-cCCCCCCcEEcCC-CChhh
Q 046626 2 LQQIMRSCLNGK--RYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASIM-GTMRGTGGYKLEG-LPYES 77 (557)
Q Consensus 2 l~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~-~~~~~~~~~~~~~-L~~~~ 77 (557)
+.+.+++.+.++ |+||||||||+. ..|.. ..+|||||||||++.++..+ +.. ..+++.. |+.++
T Consensus 223 ~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~~~~~~~~~~~---~~~~~~~~l~~~~ 290 (1249)
T 3sfz_A 223 AKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDKSVTDSVMGPK---HVVPVESGLGREK 290 (1249)
T ss_dssp HHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESSTTTTTTCCSCB---CCEECCSSCCHHH
T ss_pred HHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCHHHHHhhcCCc---eEEEecCCCCHHH
Confidence 456777888777 999999999853 23322 25799999999999998543 333 3799996 99999
Q ss_pred hHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHHHHHHhhhcc----cccc----ccCCc
Q 046626 78 CLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIW----KLEQ----KENDI 149 (557)
Q Consensus 78 a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w~~l~~~~~~----~~~~----~~~~i 149 (557)
|++||...++... +++.+.+++|+++|+|+||||+++|+.|+.++ ..|+...+.... .+.. ..+.+
T Consensus 291 a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 364 (1249)
T 3sfz_A 291 GLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEAL 364 (1249)
T ss_dssp HHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHH
T ss_pred HHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHH
Confidence 9999999985432 34456789999999999999999999999765 346554432211 1111 11357
Q ss_pred hhhHhhcccCCChhhHHHhhhhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCceeccCCCC
Q 046626 150 LPALKLSYDQLPPHLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQDFSNGML 229 (557)
Q Consensus 150 ~~~L~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~~~~~~ 229 (557)
..++.+||+.|++.+|.||++||+||+++.++...+++.|.++ ++.+..++.+|+++++++....
T Consensus 365 ~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~--- 429 (1249)
T 3sfz_A 365 DEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRN--- 429 (1249)
T ss_dssp HHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEES---
T ss_pred HHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecC---
Confidence 8899999999999999999999999999999999999999653 3567889999999999986543
Q ss_pred CCCcceeEEEEcHHHHHHHHHHhcCC
Q 046626 230 PEGFEIFFFKMHDLMHDLAQLVAKGE 255 (557)
Q Consensus 230 ~~~~~~~~~~~h~~i~~l~~~~~~~~ 255 (557)
+....++||++++++++....++
T Consensus 430 ---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 430 ---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---CCceEEEecHHHHHHHHhhhhHH
Confidence 34457999999999998886654
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=4.9e-24 Score=209.42 Aligned_cols=223 Identities=22% Similarity=0.285 Sum_probs=148.0
Q ss_pred CCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCc
Q 046626 291 DLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQ 370 (557)
Q Consensus 291 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 370 (557)
....++.|.+..+... .+|..+.++++|++|++++|.+..+|..++++++|++|++++|. +..+|..++.+++|+
T Consensus 79 ~~~~l~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP----QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS----SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCch----hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCC
Confidence 3567888888766554 23444667888888888888888888888888888888888885 668888888888888
Q ss_pred EeecCCcCCCccccccccC---------CCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCC
Q 046626 371 TLSLGGCRELEELPKDIRY---------LVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCE 441 (557)
Q Consensus 371 ~L~l~~~~~~~~~p~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~ 441 (557)
+|++++|.....+|..++. +++|++|++++|.+..+|..++.+++|++|++++|. +..+|..+..+.+++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCC
Confidence 8888888888888887765 888888888888888888888888888888888753 444554444445555
Q ss_pred CccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceee
Q 046626 442 SLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLA 521 (557)
Q Consensus 442 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~ 521 (557)
.|+++.|...... ......+++|++|++++|.....+|.++ ..+++|+.|+|++|+..+.+|.+++++++|+.+.
T Consensus 233 ~L~Ls~n~~~~~~---p~~~~~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 233 ELDLRGCTALRNY---PPIFGGRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp EEECTTCTTCCBC---CCCTTCCCCCCEEECTTCTTCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred EEECcCCcchhhh---HHHhcCCCCCCEEECCCCCchhhcchhh--hcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 5555443321111 1112334455555555554444455444 4455555555555555555555555555555554
Q ss_pred ecC
Q 046626 522 IGG 524 (557)
Q Consensus 522 l~~ 524 (557)
+..
T Consensus 308 l~~ 310 (328)
T 4fcg_A 308 VPP 310 (328)
T ss_dssp CCG
T ss_pred CCH
Confidence 443
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.5e-24 Score=208.57 Aligned_cols=222 Identities=21% Similarity=0.290 Sum_probs=183.1
Q ss_pred cCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 318 KSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 318 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
....+++|+++++.+..+|..+.++++|++|++++|. +..+|..++.+++|++|++++|... .+|..++.+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 3578999999999999999999999999999999886 6689988999999999999998744 8899999999999999
Q ss_pred ccccccc-ccccCcCC---------CCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCc
Q 046626 398 VSTKQKS-LLESGIGC---------LSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHL 467 (557)
Q Consensus 398 l~~~~~~-~~~~~~~~---------l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L 467 (557)
+++|... .+|..++. +++|++|++++| .+..+|..+..+.+++.|+++.|.....+. ....+++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGP----AIHHLPKL 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCG----GGGGCTTC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCch----hhccCCCC
Confidence 9986544 67776654 899999999985 566888778888888999888876443222 23677899
Q ss_pred ceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccC
Q 046626 468 RKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIP 547 (557)
Q Consensus 468 ~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~ 547 (557)
++|+++++.....+|.++ +.+++|++|+|++|...+.+|..++.+++|++|++++|+ ..+..+..+.+++
T Consensus 232 ~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~--------~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIF--GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV--------NLSRLPSLIAQLP 301 (328)
T ss_dssp CEEECTTCTTCCBCCCCT--TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT--------TCCCCCGGGGGSC
T ss_pred CEEECcCCcchhhhHHHh--cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC--------chhhccHHHhhcc
Confidence 999999988888888888 889999999999999999999999999999999999964 3445556777888
Q ss_pred ceeeCCCCC
Q 046626 548 QVRIDDESD 556 (557)
Q Consensus 548 ~l~~l~~~~ 556 (557)
+++.++++.
T Consensus 302 ~L~~l~l~~ 310 (328)
T 4fcg_A 302 ANCIILVPP 310 (328)
T ss_dssp TTCEEECCG
T ss_pred CceEEeCCH
Confidence 887776654
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.1e-23 Score=230.94 Aligned_cols=234 Identities=19% Similarity=0.148 Sum_probs=145.5
Q ss_pred HHhhcCCCcceEeeCCCChh-hhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCC
Q 046626 314 SCISKSQFLRVIDLSETAIE-VLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVS 392 (557)
Q Consensus 314 ~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 392 (557)
..+.++++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..++.+++|++|++++|.....+|..++.+++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 33444555555555555544 34444555555555555555433345555555555555555555444445555555555
Q ss_pred CcEEEccccccc-ccccCcCCCCCCCeecccccccccccccceEecccCCCccccCcccccc-c----------------
Q 046626 393 LRMFMVSTKQKS-LLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEG-E---------------- 454 (557)
Q Consensus 393 L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~-~---------------- 454 (557)
|++|++++|.+. .+|..++.+++|++|++++|.....+|..+..+.+++.|+++.|..... +
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 555555555544 4444455555555555555444444444444444444444443321100 0
Q ss_pred --------------------------------------------------cccccccCCCCCcceEEEeCCCCCCCCChh
Q 046626 455 --------------------------------------------------ESHCDRNKTRLHLRKLFVEGLPPLLELPQW 484 (557)
Q Consensus 455 --------------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~ 484 (557)
.........+.+|++|+++++.-...+|..
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 000112234578999999997665678999
Q ss_pred hccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 485 LLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 485 ~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
+ +.+++|+.|+|++|...+.+|..++++++|+.|+|++ +.+.|..+..+..+++|+.+|+|+|
T Consensus 652 l--~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~--------N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 652 I--GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS--------NKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp G--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS--------SCCEECCCGGGGGCCCCSEEECCSS
T ss_pred H--hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC--------CcccCcCChHHhCCCCCCEEECcCC
Confidence 8 8999999999999999999999999999999999999 5777888889999999999999988
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.4e-23 Score=203.28 Aligned_cols=251 Identities=20% Similarity=0.177 Sum_probs=198.9
Q ss_pred CceEEEEeecCCCCcc-cccccccCCCCCcEEEecC-CCccchhHHHHHHhhcCCCcceEeeCCCChh-hhccccCCCCc
Q 046626 268 KRVCHLSFVGANTSRN-DFSSLLSDLRRARTILFPI-NDEKTNQSILTSCISKSQFLRVIDLSETAIE-VLSREIGNLKH 344 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~l~~ 344 (557)
.+++.+.+.++.+... .++..+..+++|++|.+.. +... ...|..+.++++|++|++++|.+. .+|..+.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc---ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 5788899988877651 2567788999999999984 5443 234556888999999999999998 78888999999
Q ss_pred cCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCC-CCcEEEccccccc-ccccCcCCCCCCCeeccc
Q 046626 345 LRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLV-SLRMFMVSTKQKS-LLESGIGCLSSLRFLMIS 422 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 422 (557)
|++|++++|.....+|..++.+++|++|++++|.....+|..++.++ +|++|++++|.+. .+|..++.++ |++|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999975558899999999999999999987778999999998 9999999999988 7788888887 9999999
Q ss_pred ccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccc
Q 046626 423 DCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCP 502 (557)
Q Consensus 423 ~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~ 502 (557)
+|......+..+..+.+++.|+++.|........ ...+++|++|+++++.-...+|.++ ..+++|+.|+|++|.
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNN 279 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG----CCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSE
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc----ccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCc
Confidence 8765556666677778888888877754322211 2456788888888765444677777 778888888888888
Q ss_pred ccccCCccCCCCCCcceeeecCCCccc
Q 046626 503 NFMALPESLRNLEALETLAIGGCPALS 529 (557)
Q Consensus 503 ~~~~lp~~l~~l~~L~~L~l~~c~~l~ 529 (557)
..+.+|.. +.+++|+.|++++|+.+.
T Consensus 280 l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred ccccCCCC-ccccccChHHhcCCCCcc
Confidence 77777774 778888888888877554
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=8.9e-24 Score=226.49 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=165.7
Q ss_pred HHHHhhcCCCcceEeeCCCChhh------------------hccccC--CCCccCeeeccCCcCccccchhhhcCCcCcE
Q 046626 312 LTSCISKSQFLRVIDLSETAIEV------------------LSREIG--NLKHLRYLDLSDNDKIKKLPNSICELHSLQT 371 (557)
Q Consensus 312 ~~~~~~~~~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 371 (557)
+|..+.++++|++|++++|.+.. +|..++ ++++|++|++++|...+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 45668889999999999999987 899988 9999999999999878889999999999999
Q ss_pred eecCCcC-CCc-cccccccCC------CCCcEEEccccccccccc--CcCCCCCCCeecccccccccccccceEecccCC
Q 046626 372 LSLGGCR-ELE-ELPKDIRYL------VSLRMFMVSTKQKSLLES--GIGCLSSLRFLMISDCENLEYFSLETLMLKDCE 441 (557)
Q Consensus 372 L~l~~~~-~~~-~~p~~~~~l------~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~ 441 (557)
|++++|. ... .+|..++.+ ++|++|++++|.+..+|. .++.+++|++|++++|.....+| .+..+.+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 9999987 555 689888887 899999999999988888 89999999999999866554888 788888888
Q ss_pred CccccCccccccccccccccCCCCC-cceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCC-------C
Q 046626 442 SLNLNLNIEMEGEESHCDRNKTRLH-LRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLR-------N 513 (557)
Q Consensus 442 ~l~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~-------~ 513 (557)
.|+++.|.....+ .....+++ |++|+++++. +..+|.++....+++|+.|++++|...+..|..+. .
T Consensus 357 ~L~L~~N~l~~lp----~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 357 SLNLAYNQITEIP----ANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEECCSSEEEECC----TTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred EEECCCCcccccc----HhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 8888877643222 22345666 8888888764 45778776222244788888888887777777777 6
Q ss_pred CCCcceeeecCC
Q 046626 514 LEALETLAIGGC 525 (557)
Q Consensus 514 l~~L~~L~l~~c 525 (557)
+++|++|++++|
T Consensus 432 ~~~L~~L~Ls~N 443 (636)
T 4eco_A 432 GINVSSINLSNN 443 (636)
T ss_dssp CCCEEEEECCSS
T ss_pred CCCCCEEECcCC
Confidence 677777777775
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1.4e-23 Score=204.98 Aligned_cols=248 Identities=17% Similarity=0.165 Sum_probs=202.1
Q ss_pred CCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCC-CChh-hhccccCCCCccCeeeccCCcCccccchhhhcCCcCc
Q 046626 293 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSE-TAIE-VLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQ 370 (557)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 370 (557)
.+++.+.+..+..... ...|..+.++++|++|++++ |.+. .+|..++++++|++|++++|...+.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~-~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSC-EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCC-cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 5788888887665420 03456788999999999995 8887 7899999999999999999975558999999999999
Q ss_pred EeecCCcCCCccccccccCCCCCcEEEccccccc-ccccCcCCCC-CCCeecccccccccccccceEecccCCCccccCc
Q 046626 371 TLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS-LLESGIGCLS-SLRFLMISDCENLEYFSLETLMLKDCESLNLNLN 448 (557)
Q Consensus 371 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~ 448 (557)
+|++++|.....+|..++.+++|++|++++|.+. .+|..++.++ +|++|++++|.....+|..+..+. ++.|+++.|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999999877789999999999999999999998 8899999998 999999999766556676666665 888888887
Q ss_pred cccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCcc
Q 046626 449 IEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPAL 528 (557)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l 528 (557)
...... ......+++|++|+++++.. ...+..+ ..+++|++|+|++|.+.+.+|.++..+++|++|++++|.
T Consensus 208 ~l~~~~---~~~~~~l~~L~~L~L~~N~l-~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-- 279 (313)
T 1ogq_A 208 MLEGDA---SVLFGSDKNTQKIHLAKNSL-AFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-- 279 (313)
T ss_dssp EEEECC---GGGCCTTSCCSEEECCSSEE-CCBGGGC--CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE--
T ss_pred cccCcC---CHHHhcCCCCCEEECCCCce-eeecCcc--cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc--
Confidence 543221 12236788999999998644 3344445 778999999999999888999999999999999999964
Q ss_pred ccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 529 SERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
+.+..+. ...+++|+.+++++|
T Consensus 280 ------l~~~ip~-~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 280 ------LCGEIPQ-GGNLQRFDVSAYANN 301 (313)
T ss_dssp ------EEEECCC-STTGGGSCGGGTCSS
T ss_pred ------ccccCCC-CccccccChHHhcCC
Confidence 3333332 377899999999887
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=210.95 Aligned_cols=278 Identities=15% Similarity=0.127 Sum_probs=170.3
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKH 344 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~ 344 (557)
.+..++.+.+.++.+... .+..+.++++|+.|.+..+... ...+..|.++++|++|++++|.+..+|.. +.++++
T Consensus 30 ~~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVS---AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CCTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccC---EeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 456777888877776654 2356777888888888766544 23345577888888888888888877764 678888
Q ss_pred cCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccc-cCcCCCCCCCeecccc
Q 046626 345 LRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLE-SGIGCLSSLRFLMISD 423 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~ 423 (557)
|++|++++|......|..+..+++|++|++++|......|..+..+++|++|++++|.+..++ ..++.+++|+.|++++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 888888888644455667788888888888887766666667778888888888888777554 3466777777777776
Q ss_pred cccccccccceEecccCCCccccCccccccccccc---------------------cccCCCCCcceEEEeCCCCCCCCC
Q 046626 424 CENLEYFSLETLMLKDCESLNLNLNIEMEGEESHC---------------------DRNKTRLHLRKLFVEGLPPLLELP 482 (557)
Q Consensus 424 c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~---------------------~~~~~~~~L~~L~l~~~~~l~~lp 482 (557)
|......+..+..+.+++.|+++.+.......... .....+++|++|+++++. +..++
T Consensus 186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 264 (477)
T 2id5_A 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIE 264 (477)
T ss_dssp CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEEC
T ss_pred CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccC
Confidence 44322222234444555555554432111100000 011334455555555432 22333
Q ss_pred hhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 483 QWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
...+ ..+++|+.|+|++|......|..+..+++|+.|++++| .+.+.....+..+++|+.+++++|
T Consensus 265 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 265 GSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN--------QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp TTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS--------CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred hhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCC--------cCceeCHhHcCCCcccCEEEccCC
Confidence 2211 44555555555555554444555555566666666553 334444445677788888888776
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.7e-22 Score=208.45 Aligned_cols=275 Identities=15% Similarity=0.051 Sum_probs=176.4
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKH 344 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~ 344 (557)
.+..++.+.+.++.+... .+..+.++++|++|.+..+... ....+..+.++++|++|++++|.+..+ |..++++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcC-ChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 456778888887776553 3456778888888888765432 122344577788888888888888755 667888888
Q ss_pred cCeeeccCCcCccccchh--hhcCCcCcEeecCCcCCCcccccc-ccCCCCCcEEEccccccccc-ccCcC---------
Q 046626 345 LRYLDLSDNDKIKKLPNS--ICELHSLQTLSLGGCRELEELPKD-IRYLVSLRMFMVSTKQKSLL-ESGIG--------- 411 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~-~~~~~--------- 411 (557)
|++|++++|...+.+|.. +..+++|++|++++|......|.. ++.+++|++|++++|.+... +..++
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 888888888643345544 778888888888888765555655 67888888888888876633 33333
Q ss_pred -------------------------CCCCCCeecccccccccc-------------------------------------
Q 046626 412 -------------------------CLSSLRFLMISDCENLEY------------------------------------- 429 (557)
Q Consensus 412 -------------------------~l~~L~~L~l~~c~~l~~------------------------------------- 429 (557)
.+++|++|++++|.....
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 235667777766532111
Q ss_pred --------------------------cccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCC-C
Q 046626 430 --------------------------FSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL-P 482 (557)
Q Consensus 430 --------------------------l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-p 482 (557)
.+..+..+.+++.|+++.|...... ......+++|++|+++++. +..+ |
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~-l~~~~~ 340 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID---DNAFWGLTHLLKLNLSQNF-LGSIDS 340 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSC-CCEECG
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC---hhHhcCcccCCEEECCCCc-cCCcCh
Confidence 1112223334444444444321111 1122455677777777753 3344 4
Q ss_pred hhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 483 QWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
..+ ..+++|+.|+|++|...+..|..+..+++|++|++++| .+.+.....+.++++|+.+++++|
T Consensus 341 ~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 341 RMF--ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN--------QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp GGG--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--------CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hHh--cCcccCCEEECCCCcccccChhhccccccccEEECCCC--------ccccCCHhHhccCCcccEEEccCC
Confidence 445 66777788888777766666777777788888888774 444444455678888888888887
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=4.5e-22 Score=217.21 Aligned_cols=281 Identities=14% Similarity=0.075 Sum_probs=201.8
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCC-ccchhHHHHHHhhc-------CCCcceEeeCCCChhhhcc-
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPIND-EKTNQSILTSCISK-------SQFLRVIDLSETAIEVLSR- 337 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~l~~- 337 (557)
...++.+.+..+..... ++..+.++++|+.|.+..+. ... ...|..+.+ +++|++|++++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg--~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISA--AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCH--HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCccc--ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 46788999988876554 66788999999999998765 431 134444444 4599999999999999998
Q ss_pred -ccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCC-CcEEEcccccccccccCcCCCCC
Q 046626 338 -EIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVS-LRMFMVSTKQKSLLESGIGCLSS 415 (557)
Q Consensus 338 -~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~~~~~~l~~ 415 (557)
.++++++|+.|++++|. +..+| .++.+++|++|++++|... .+|..++.+++ |+.|++++|.+..+|..++.+..
T Consensus 567 ~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~ 643 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643 (876)
T ss_dssp HHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred hhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhcccc
Confidence 89999999999999986 66999 7999999999999998855 89999999999 99999999999888877776654
Q ss_pred --CCeeccccccccccc----------------------------ccceE-ecccCCCccccCccccccccccccc----
Q 046626 416 --LRFLMISDCENLEYF----------------------------SLETL-MLKDCESLNLNLNIEMEGEESHCDR---- 460 (557)
Q Consensus 416 --L~~L~l~~c~~l~~l----------------------------~~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~---- 460 (557)
|+.|++++|.....+ |.... .+.+++.|+++.|.....+...+..
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 788887775432221 11111 2344555555555432211111110
Q ss_pred cCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCC
Q 046626 461 NKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDW 540 (557)
Q Consensus 461 ~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 540 (557)
...+++|++|+++++ .+..+|..+....+++|+.|+|++|...+ +|..+..+++|+.|+|++|+.+.. +...+..+
T Consensus 724 l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~--N~l~~~ip 799 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG--NRILRQWP 799 (876)
T ss_dssp CTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC--CBCCCCCC
T ss_pred ccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc--ccccccCh
Confidence 012237888888886 45578877721278888888888887554 787888888888888887653321 34455566
Q ss_pred CcccccCceeeCCCCCC
Q 046626 541 PKIAHIPQVRIDDESDN 557 (557)
Q Consensus 541 ~~~~~l~~l~~l~~~~n 557 (557)
..+.++++|+.|++++|
T Consensus 800 ~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSN 816 (876)
T ss_dssp TTGGGCSSCCEEECCSS
T ss_pred HHHhcCCCCCEEECCCC
Confidence 67788888888888876
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=3.8e-22 Score=213.88 Aligned_cols=282 Identities=14% Similarity=0.059 Sum_probs=194.4
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCC-ccchhHHHHHHhhcC------CCcceEeeCCCChhhhcc--
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPIND-EKTNQSILTSCISKS------QFLRVIDLSETAIEVLSR-- 337 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~l~~-- 337 (557)
...++.+.+.++..... ++..+.++++|++|.+..+. .. ....|..+.++ ++|++|++++|.+..+|.
T Consensus 248 l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~l~--~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGIS--GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTTSC--HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred cCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCCCc--cccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 46788999988876664 66788899999999998765 43 11455556555 899999999999999998
Q ss_pred ccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCC-CcEEEcccccccccccCcCCCC--
Q 046626 338 EIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVS-LRMFMVSTKQKSLLESGIGCLS-- 414 (557)
Q Consensus 338 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~~~~~~~l~-- 414 (557)
.++++++|++|++++|...+.+| .++.+++|++|++++|.. ..+|..++.+++ |++|++++|.+..+|..++.+.
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE-EECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc-ccccHhhhhhcccCcEEEccCCcCcccchhhhhcccC
Confidence 89999999999999986444888 788888999999988874 488888888888 8888888888887777766654
Q ss_pred CCCeecccccccccccccceE-------e------------------------cccCCCccccCccccccccccccc---
Q 046626 415 SLRFLMISDCENLEYFSLETL-------M------------------------LKDCESLNLNLNIEMEGEESHCDR--- 460 (557)
Q Consensus 415 ~L~~L~l~~c~~l~~l~~~~~-------~------------------------l~~l~~l~l~~~~~~~~~~~~~~~--- 460 (557)
+|++|++++|......|..+. . +.+++.|+++.|.....+...+..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 677777776544332222222 2 334444444444322111111100
Q ss_pred -cCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCC
Q 046626 461 -NKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGED 539 (557)
Q Consensus 461 -~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 539 (557)
...+++|++|+++++ .+..+|..+....+++|+.|+|++|...+ +|..+..+++|+.|++++|..+.. +...+..
T Consensus 483 ~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~--N~l~~~~ 558 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG--NRTLREW 558 (636)
T ss_dssp ECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC--CBCCCCC
T ss_pred cccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc--CcccccC
Confidence 011227777888775 44577777611277888888888887655 777788888888888866542211 3445556
Q ss_pred CCcccccCceeeCCCCCC
Q 046626 540 WPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 540 ~~~~~~l~~l~~l~~~~n 557 (557)
+..+.++++|+.+++++|
T Consensus 559 p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CTTGGGCSSCCEEECCSS
T ss_pred hHHHhcCCCCCEEECCCC
Confidence 667777888888888776
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.3e-22 Score=222.52 Aligned_cols=273 Identities=18% Similarity=0.130 Sum_probs=193.6
Q ss_pred CceEEEEeecCCCCcccccccccC-CCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChh-hhccc-cCCCCc
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSD-LRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIE-VLSRE-IGNLKH 344 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~-~~~l~~ 344 (557)
..++.+.+.++..... ++..+.. +++|+.|.+..+... ...|..+.++++|++|++++|.+. .+|.. +..+++
T Consensus 269 ~~L~~L~L~~n~l~~~-ip~~~~~~~~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGE-IPDFLSGACDTLTGLDLSGNHFY---GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344 (768)
T ss_dssp TTCCEEECCSSEEEES-CCCCSCTTCTTCSEEECCSSEEE---ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred CCCCEEECcCCccCCc-cCHHHHhhcCcCCEEECcCCcCC---CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence 4455566555544322 2333333 377777777655433 234455677788888888888776 66665 777888
Q ss_pred cCeeeccCCcCccccchhhhcCC-cCcEeecCCcCCCccccccccC--CCCCcEEEccccccc-ccccCcCCCCCCCeec
Q 046626 345 LRYLDLSDNDKIKKLPNSICELH-SLQTLSLGGCRELEELPKDIRY--LVSLRMFMVSTKQKS-LLESGIGCLSSLRFLM 420 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~--l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~ 420 (557)
|++|++++|...+.+|..+..++ +|++|++++|.....+|..++. +++|++|++++|.+. .+|..++.+++|++|+
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 88888887764457777777776 7888888877766667777666 777888888888777 6777788888888888
Q ss_pred ccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccc
Q 046626 421 ISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRN 500 (557)
Q Consensus 421 l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~ 500 (557)
+++|.....+|..+..+.+++.|+++.|...... ......+++|++|+++++.....+|.++ ..+++|+.|+|++
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~ 499 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSN 499 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCS
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcC---CHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccC
Confidence 8887655566777777777888877766532111 1122456788888888876655678877 7788888888888
Q ss_pred ccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 501 CPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 501 c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
|...+.+|.+++.+++|++|++++| .+.+..+..+.++++|+.+++++|
T Consensus 500 N~l~~~~p~~~~~l~~L~~L~L~~N--------~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 500 NRLTGEIPKWIGRLENLAILKLSNN--------SFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSS--------CCEEECCGGGGGCTTCCEEECCSS
T ss_pred CccCCcCChHHhcCCCCCEEECCCC--------cccCcCCHHHcCCCCCCEEECCCC
Confidence 8877788888888888888888885 444556667888888888888876
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=8.2e-21 Score=187.05 Aligned_cols=271 Identities=14% Similarity=0.129 Sum_probs=199.2
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCcc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHL 345 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L 345 (557)
.+..++.+.+.++.+... .+..+.++++|++|.+..+... ...+..+.++++|++|++++|.+..+|..+. ++|
T Consensus 50 ~~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp CCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCC---eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 345778888888877664 2345778999999999876654 2335567888999999999999998887765 689
Q ss_pred CeeeccCCcCccccc-hhhhcCCcCcEeecCCcCCCc--cccccccCCCCCcEEEcccccccccccCcCCCCCCCeeccc
Q 046626 346 RYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCRELE--ELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMIS 422 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 422 (557)
++|++++|. +..+| ..+..+++|++|++++|.... ..|..+..+++|++|++++|.+..+|..+. ++|++|+++
T Consensus 124 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 124 QELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLD 200 (330)
T ss_dssp CEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECT
T ss_pred cEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECC
Confidence 999999886 55554 458889999999999987542 567788899999999999999988887654 889999999
Q ss_pred ccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccc
Q 046626 423 DCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCP 502 (557)
Q Consensus 423 ~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~ 502 (557)
+|......+..+..+.+++.|+++.|........ ....+++|++|+++++ .+..+|.++ ..+++|++|++++|.
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG---SLANTPHLRELHLNNN-KLVKVPGGL--ADHKYIQVVYLHNNN 274 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT---TGGGSTTCCEEECCSS-CCSSCCTTT--TTCSSCCEEECCSSC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChh---hccCCCCCCEEECCCC-cCccCChhh--ccCCCcCEEECCCCc
Confidence 8653333345566778888888887754322221 2256788999999986 566888888 788999999999998
Q ss_pred ccccCCccCCC------CCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 503 NFMALPESLRN------LEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 503 ~~~~lp~~l~~------l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
+....+..+.. .++|+.|+++++|--. ....+..+..+++++.+++++|
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~------~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY------WEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG------GGSCGGGGTTCCCGGGEEC---
T ss_pred CCccChhhcCCcccccccccccceEeecCcccc------cccCccccccccceeEEEeccc
Confidence 66544444533 4788899999875211 1223456777888988888887
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=3.2e-21 Score=206.46 Aligned_cols=273 Identities=18% Similarity=0.102 Sum_probs=166.9
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChh-hhccc-cCCCCcc
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIE-VLSRE-IGNLKHL 345 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~-~~~l~~L 345 (557)
..++.+.+.++.+.. ++..+..+++|++|.+..+... ...+..+.++++|++|++++|.+. .+|.. +..+++|
T Consensus 278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFE---NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCS---BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred cCCCEEeccCCccCC--CChhhcccccCCEEECccCCcC---cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 445555555554442 3444555666666666654433 222344556666666666666655 44333 6666667
Q ss_pred CeeeccCCcCcccc---chhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccccc--ccCcCCCCCCCeec
Q 046626 346 RYLDLSDNDKIKKL---PNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLL--ESGIGCLSSLRFLM 420 (557)
Q Consensus 346 ~~L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~ 420 (557)
++|++++|. +..+ |..++.+++|++|++++|......|..++.+++|++|++++|.+... +..++.+++|++|+
T Consensus 353 ~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 777776664 3332 45566677777777777665555566666777777777777766532 23366677777777
Q ss_pred ccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccc
Q 046626 421 ISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRN 500 (557)
Q Consensus 421 l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~ 500 (557)
+++|......+..+..+.+++.|+++.|...............+++|++|+++++.-....|..+ ..+++|+.|+|++
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF--TSLKMMNHVDLSH 509 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCS
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh--ccccCCCEEECCC
Confidence 77655444444445556667777766664322111111223556777777777764333335555 6777777777777
Q ss_pred ccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 501 CPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 501 c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
|...+..|..+..+++| .|++++| .+.+..+..+.++++|+.+++++|
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N--------~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASN--------HISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSS--------CCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CccCcCChhHhCccccc-EEECcCC--------cccccCHhhcccCCCCCEEeCCCC
Confidence 77766677777777777 7777773 455555666788888898888887
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=6.3e-22 Score=216.06 Aligned_cols=238 Identities=15% Similarity=0.128 Sum_probs=151.6
Q ss_pred HHHHhhcCCCcceEeeCCCChhh------------------hccccC--CCCccCeeeccCCcCccccchhhhcCCcCcE
Q 046626 312 LTSCISKSQFLRVIDLSETAIEV------------------LSREIG--NLKHLRYLDLSDNDKIKKLPNSICELHSLQT 371 (557)
Q Consensus 312 ~~~~~~~~~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 371 (557)
+|..+.++++|++|+|++|.+.. +|..++ ++++|++|+|++|...+.+|..++.+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 45567888888888888888887 888877 8888888888888777888888888888888
Q ss_pred eecCCcC-CCc-cccccccCCC-------CCcEEEccccccccccc--CcCCCCCCCeecccccccccccccceEecccC
Q 046626 372 LSLGGCR-ELE-ELPKDIRYLV-------SLRMFMVSTKQKSLLES--GIGCLSSLRFLMISDCENLEYFSLETLMLKDC 440 (557)
Q Consensus 372 L~l~~~~-~~~-~~p~~~~~l~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l 440 (557)
|++++|. ... .+|..++.++ +|++|++++|.+..+|. .++.+++|++|++++|. +..+| .+..+.++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcc
Confidence 8888887 444 5777666665 88888888888887777 78888888888888754 44666 56666677
Q ss_pred CCccccCccccccccccccccCCCCC-cceEEEeCCCCCCCCChhhccCCCcccceEecccccccc--------------
Q 046626 441 ESLNLNLNIEMEGEESHCDRNKTRLH-LRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFM-------------- 505 (557)
Q Consensus 441 ~~l~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~-------------- 505 (557)
+.|+++.|.....+ .....+++ |++|+++++. +..+|.++.....++|+.|+|++|...+
T Consensus 598 ~~L~Ls~N~l~~lp----~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 598 TDLKLDYNQIEEIP----EDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SEEECCSSCCSCCC----TTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred eEEECcCCccccch----HHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 77777666533111 11244455 6777776653 3456655411112235555555554433
Q ss_pred --------------cCCccC-CCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 506 --------------ALPESL-RNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 506 --------------~lp~~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
.+|..+ ..+++|+.|++++|. +..++........+...++++|+.|++++|
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N 738 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC
Confidence 333332 245556666665542 222222211111122334558888888876
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.9e-20 Score=184.55 Aligned_cols=269 Identities=14% Similarity=0.089 Sum_probs=176.8
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccC
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLR 346 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 346 (557)
+..++.+.+.++.+... .+..+.++++|++|.+..+... ...+..+.++++|++|++++|.+..+|..+. ++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKIS---KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC---EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccC---ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 34667777777665543 2345677778888887766543 2334556777888888888887777776655 6788
Q ss_pred eeeccCCcCccccch-hhhcCCcCcEeecCCcCCC--ccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccc
Q 046626 347 YLDLSDNDKIKKLPN-SICELHSLQTLSLGGCREL--EELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISD 423 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 423 (557)
+|++++|. +..+|. .+..+++|++|++++|... ...|..+..+ +|++|++++|.+..+|..+. ++|++|++++
T Consensus 127 ~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~ 202 (332)
T 2ft3_A 127 ELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDH 202 (332)
T ss_dssp EEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCS
T ss_pred EEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCC
Confidence 88888775 555554 4677888888888877653 2455666666 78888888887777776554 6788888887
Q ss_pred cccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccc
Q 046626 424 CENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPN 503 (557)
Q Consensus 424 c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~ 503 (557)
|......+..+..+.+++.|+++.|........ ....+++|++|+++++ .+..+|.++ ..+++|+.|++++|..
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG---SLSFLPTLRELHLDNN-KLSRVPAGL--PDLKLLQVVYLHTNNI 276 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT---GGGGCTTCCEEECCSS-CCCBCCTTG--GGCTTCCEEECCSSCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChh---HhhCCCCCCEEECCCC-cCeecChhh--hcCccCCEEECCCCCC
Confidence 543332234566677788888777653322221 1245678888888875 556788877 6788888888888876
Q ss_pred cccCCccCCC------CCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 504 FMALPESLRN------LEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 504 ~~~lp~~l~~------l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
....+..+.. .++|+.|++++|+... ....+..+..+++|+.+++++|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~------~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY------WEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG------GGSCGGGGTTBCCSTTEEC---
T ss_pred CccChhHccccccccccccccceEeecCcccc------cccCcccccccchhhhhhcccc
Confidence 5544444443 3678888888865211 1223356778888888888876
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=8.6e-21 Score=210.23 Aligned_cols=276 Identities=15% Similarity=0.035 Sum_probs=179.2
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKH 344 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~ 344 (557)
.+..++.+.+..+.+... .+..+.++++|++|.+..+... ....+..+.++++|++|+|++|.+..+ |..++++++
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 567889999998887664 4567889999999999866332 233356688999999999999999866 778999999
Q ss_pred cCeeeccCCcCccccchh--hhcCCcCcEeecCCcCCCcccc-ccccCCCCCcEEEccccccc-ccccCcCCC--CCCCe
Q 046626 345 LRYLDLSDNDKIKKLPNS--ICELHSLQTLSLGGCRELEELP-KDIRYLVSLRMFMVSTKQKS-LLESGIGCL--SSLRF 418 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l--~~L~~ 418 (557)
|++|+|++|.....+|.. ++.+++|++|++++|......| ..++++++|++|++++|.+. ..+..++.+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 999999998754556665 8899999999999988655444 57899999999999998876 344555555 56666
Q ss_pred ecccccccccccccceEeccc------CCCccccCc--------------------------------------------
Q 046626 419 LMISDCENLEYFSLETLMLKD------CESLNLNLN-------------------------------------------- 448 (557)
Q Consensus 419 L~l~~c~~l~~l~~~~~~l~~------l~~l~l~~~-------------------------------------------- 448 (557)
|++++|......+..+....+ ++.|+++.|
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 666655433333322221111 333333322
Q ss_pred ------------------cccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCcc
Q 046626 449 ------------------IEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPES 510 (557)
Q Consensus 449 ------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~ 510 (557)
..... .......+++|+.|+++++.-....|..+ ..+++|++|+|++|...+..|..
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSL---NSRVFETLKDLKVLNLAYNKINKIADEAF--YGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEE---CSCCSSSCCCCCEEEEESCCCCEECTTTT--TTCSSCCEEEEESCCCSCCCSCS
T ss_pred hhhccccCCccEEECCCCccccc---ChhhhhcCCCCCEEECCCCcCCCCChHHh--cCCCCCCEEECCCCCCCccCHHH
Confidence 11000 01112344556666666543222223344 55666666666666655555556
Q ss_pred CCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 511 LRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 511 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
+..+++|+.|++++| ...+.....+.++++|+.+++++|
T Consensus 334 ~~~l~~L~~L~L~~N--------~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKN--------HIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CSSCTTCCEEECCSC--------CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred hcCCCCCCEEECCCC--------CCCccChhhhcCCCCCCEEECCCC
Confidence 666666666666663 333344455677888888887776
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=5.9e-20 Score=182.33 Aligned_cols=256 Identities=18% Similarity=0.196 Sum_probs=140.3
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCe
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRY 347 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 347 (557)
..++.+.+.++.+... ..+..+++|++|.+..+..... +.+.++++|++|++++|.+..++. +..+++|++
T Consensus 66 ~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITDI-----SALQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred CCccEEEccCCccccc---hhhhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 3455555555544432 1145555555555554433321 124555555555555555555444 555555555
Q ss_pred eeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccc
Q 046626 348 LDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENL 427 (557)
Q Consensus 348 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 427 (557)
|++++|.....++. +..+++|++|++++|.. ..++. +..+++|++|++++|.+..++. +..+++|+.|++++|. +
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l 211 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKV-KDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-I 211 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-C
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCCCc-CCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-C
Confidence 55555543444333 55555555555555542 22222 5555566666666655554443 5555666666665532 2
Q ss_pred cccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccC
Q 046626 428 EYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMAL 507 (557)
Q Consensus 428 ~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~l 507 (557)
..++. +..+.+++.|+++.+....... ...+++|++|+++++ .+..++ .+ ..+++|+.|++++|... .+
T Consensus 212 ~~~~~-~~~~~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~-~~--~~l~~L~~L~l~~n~l~-~~ 280 (347)
T 4fmz_A 212 TDITP-VANMTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTN-QISDIN-AV--KDLTKLKMLNVGSNQIS-DI 280 (347)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCCG-GG--TTCTTCCEEECCSSCCC-CC
T ss_pred CCCch-hhcCCcCCEEEccCCccCCCcc-----hhcCCCCCEEECCCC-ccCCCh-hH--hcCCCcCEEEccCCccC-CC
Confidence 22222 3344556666665554322111 356677777777775 344443 34 56777888888777644 34
Q ss_pred CccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 508 PESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 508 p~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
| .+..+++|++|++++|+ ..+..+..+..+++|+.+++++|
T Consensus 281 ~-~~~~l~~L~~L~L~~n~--------l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 281 S-VLNNLSQLNSLFLNNNQ--------LGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp G-GGGGCTTCSEEECCSSC--------CCGGGHHHHHTCTTCSEEECCSS
T ss_pred h-hhcCCCCCCEEECcCCc--------CCCcChhHhhccccCCEEEccCC
Confidence 3 46777788888887753 33334455677888888888876
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=5.2e-21 Score=198.54 Aligned_cols=250 Identities=19% Similarity=0.157 Sum_probs=180.4
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCccCeeeccCCcCccccchh-hhcCCcC
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKHLRYLDLSDNDKIKKLPNS-ICELHSL 369 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L 369 (557)
.+.++.|.+..+... ...+..|.++++|++|++++|.+..+ |..+.++++|++|+|++|. +..+|.. +..+++|
T Consensus 31 ~~~l~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 31 PTETRLLDLGKNRIK---TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNL 106 (477)
T ss_dssp CTTCSEEECCSSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTC
T ss_pred CCCCcEEECCCCccc---eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCC
Confidence 358899999877655 23345688999999999999999966 7789999999999999985 7777754 7899999
Q ss_pred cEeecCCcCCCccccccccCCCCCcEEEcccccccc-cccCcCCCCCCCeeccccccccccccc-ceEecccCCCccccC
Q 046626 370 QTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSL-LESGIGCLSSLRFLMISDCENLEYFSL-ETLMLKDCESLNLNL 447 (557)
Q Consensus 370 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~l~~l~l~~ 447 (557)
++|++++|......|..+..+++|++|++++|.+.. .+..++.+++|++|++++| .+..++. .+..+.+++.|+++.
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEES
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCC
Confidence 999999999777778899999999999999999884 4668999999999999986 4455543 355677788888777
Q ss_pred ccccccccccccccCCCCCcceEEEeCCCCCCCCChhhcc----------------------CCCcccceEecccccccc
Q 046626 448 NIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQ----------------------GSTKTLKNLIIRNCPNFM 505 (557)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~----------------------~~l~~L~~L~L~~c~~~~ 505 (557)
+........ ....+++|++|++++++.+..+|...+. ..+++|+.|+|++|....
T Consensus 186 n~i~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 186 LNINAIRDY---SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp CCCCEECTT---CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred CcCcEeChh---hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 653222111 1244556666666665544444433310 445556666666655444
Q ss_pred cCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 506 ALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 506 ~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
..+..+..+++|++|++++| .+.+..+..+..+++|+.+++++|
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGG--------QLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSS--------CCSEECTTTBTTCTTCCEEECCSS
T ss_pred cChhhccccccCCEEECCCC--------ccceECHHHhcCcccCCEEECCCC
Confidence 44445555666666666653 344445567788899999998877
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=7.5e-21 Score=196.14 Aligned_cols=132 Identities=15% Similarity=0.192 Sum_probs=111.0
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChh-hh-ccccCCCCccCeeeccCCcCccccchhhhcCCcC
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIE-VL-SREIGNLKHLRYLDLSDNDKIKKLPNSICELHSL 369 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 369 (557)
.+++++|.+..+... ...+..+.++++|++|++++|.+. .+ +..+..+++|++|++++|......|..++.+++|
T Consensus 29 ~~~l~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNSIA---ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp CTTCCEEECCSSCCC---EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CCccCEEEecCCccC---cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 378999999877654 334566889999999999999986 45 5578999999999999997555568889999999
Q ss_pred cEeecCCcCCCcccccc--ccCCCCCcEEEccccccccc-ccC-cCCCCCCCeeccccccc
Q 046626 370 QTLSLGGCRELEELPKD--IRYLVSLRMFMVSTKQKSLL-ESG-IGCLSSLRFLMISDCEN 426 (557)
Q Consensus 370 ~~L~l~~~~~~~~~p~~--~~~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~c~~ 426 (557)
++|++++|......|.. ++.+++|++|++++|.+..+ |.. ++.+++|++|++++|..
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99999999876656665 89999999999999999865 544 88999999999998653
No 23
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.84 E-value=5.5e-21 Score=203.61 Aligned_cols=213 Identities=24% Similarity=0.343 Sum_probs=160.4
Q ss_pred HHHHHHHcCC--ceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHHHHhcCCCCCCcEEc---CCCChhh
Q 046626 3 QQIMRSCLNG--KRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVASIMGTMRGTGGYKL---EGLPYES 77 (557)
Q Consensus 3 ~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~~~~~~~~~~~~---~~L~~~~ 77 (557)
.+.+++.+.+ +++||||||||+. . .+. .+ .+|++||||||++.++..+. .. .+++ ++|+.++
T Consensus 224 ~~~l~~~l~~~~~~~LLVLDdv~~~--~---~l~-~l---~~~~~ilvTsR~~~~~~~~~-~~---~~~v~~l~~L~~~e 290 (591)
T 1z6t_A 224 KDRLRILMLRKHPRSLLILDDVWDS--W---VLK-AF---DSQCQILLTTRDKSVTDSVM-GP---KYVVPVESSLGKEK 290 (591)
T ss_dssp HHHHHHHHHHTCTTCEEEEEEECCH--H---HHH-TT---CSSCEEEEEESCGGGGTTCC-SC---EEEEECCSSCCHHH
T ss_pred HHHHHHHHccCCCCeEEEEeCCCCH--H---HHH-Hh---cCCCeEEEECCCcHHHHhcC-CC---ceEeecCCCCCHHH
Confidence 4556666665 7899999999752 2 222 22 46899999999998876543 22 4565 5899999
Q ss_pred hHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHHHHHHhhhccc----cc----cccCCc
Q 046626 78 CLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYWEYVRDNEIWK----LE----QKENDI 149 (557)
Q Consensus 78 a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w~~l~~~~~~~----~~----~~~~~i 149 (557)
|++||...++.. .....+.+.+|+++|+|+|+||+.+|+.++.... .|+.+.+..... +. .....+
T Consensus 291 a~~L~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~--~w~~~l~~l~~~~~~~~~~~~~~~~~~l 364 (591)
T 1z6t_A 291 GLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RWEYYLKQLQNKQFKRIRKSSSYDYEAL 364 (591)
T ss_dssp HHHHHHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT--CHHHHHHHHHSCCCCCSSCCCSSCCHHH
T ss_pred HHHHHHHHhCCC----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch--hHHHHHHHHHHhHHHHhhhccccchHHH
Confidence 999999998642 1233457899999999999999999999997643 465544322111 10 112357
Q ss_pred hhhHhhcccCCChhhHHHhhhhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCceeccCCCC
Q 046626 150 LPALKLSYDQLPPHLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQDFSNGML 229 (557)
Q Consensus 150 ~~~L~~sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~~~~~~ 229 (557)
...+..||+.|++..|.||.++|+||++..++...+...|.++ .+.+..++..|+++++++....
T Consensus 365 ~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~--- 429 (591)
T 1z6t_A 365 DEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRN--- 429 (591)
T ss_dssp HHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEE---
T ss_pred HHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecC---
Confidence 8899999999999999999999999999999999999888543 2346788999999999985432
Q ss_pred CCCcceeEEEEcHHHHHHHHHHh
Q 046626 230 PEGFEIFFFKMHDLMHDLAQLVA 252 (557)
Q Consensus 230 ~~~~~~~~~~~h~~i~~l~~~~~ 252 (557)
+....++||+++++++....
T Consensus 430 ---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 430 ---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ---TTEEEEECCHHHHHHHHHHT
T ss_pred ---CCccEEEEcHHHHHHHHhhh
Confidence 33458999999999998763
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=2.1e-20 Score=192.45 Aligned_cols=223 Identities=19% Similarity=0.137 Sum_probs=144.8
Q ss_pred CCcceEeeCCCChhhh-ccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEc
Q 046626 320 QFLRVIDLSETAIEVL-SREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMV 398 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 398 (557)
+++++|++++|.+..+ |..+.++++|++|+|++|......|..+..+++|++|++++|......+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4566667766666644 445666667777777766432233355666677777777666533333334666667777777
Q ss_pred ccccccccc-cCcCCCCCCCeecccccccccccccc-eEecccCCCccccCccccccccccccccCCCCCcceEEEeCCC
Q 046626 399 STKQKSLLE-SGIGCLSSLRFLMISDCENLEYFSLE-TLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLP 476 (557)
Q Consensus 399 ~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 476 (557)
++|.+..+| ..+..+++|++|++++|+.++.++.. +..+.+++.|+++.|..... .....+++|++|+++++.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTTSC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcCCc
Confidence 776666443 35666677777777766666666543 44556666666665543221 123566788888888864
Q ss_pred CCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCC
Q 046626 477 PLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESD 556 (557)
Q Consensus 477 ~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~ 556 (557)
.....|..+ ..+++|+.|+|++|......|..+..+++|+.|+|++| .+.+.....+..+++|+.+++++
T Consensus 230 l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 230 FPEIRPGSF--HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN--------NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CSEECGGGG--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--------CCSCCCTTSSTTCTTCCEEECCS
T ss_pred CcccCcccc--cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC--------cCCccChHHhccccCCCEEEccC
Confidence 333335566 77888888888888877777778888888888888884 44455555677788888888887
Q ss_pred C
Q 046626 557 N 557 (557)
Q Consensus 557 n 557 (557)
|
T Consensus 300 N 300 (452)
T 3zyi_A 300 N 300 (452)
T ss_dssp S
T ss_pred C
Confidence 7
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.6e-20 Score=200.99 Aligned_cols=270 Identities=16% Similarity=0.083 Sum_probs=184.1
Q ss_pred ceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCccCe
Q 046626 269 RVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKHLRY 347 (557)
Q Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~ 347 (557)
.++.+.+.++.+... .+..+..+++|+.|.+..+... .+|..+.++++|++|++++|.+..+ |..+..+++|++
T Consensus 255 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~----~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHLS----ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSC-CTTTTTTCTTCSEEECTTSCCS----CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCccCcc-CHHHhccccCCCEEeccCCccC----CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 466666666655543 2344667788888888766543 2344467778888888888887755 456777888888
Q ss_pred eeccCCcCccccchh-hhcCCcCcEeecCCcCCCccc--cccccCCCCCcEEEccccccc-ccccCcCCCCCCCeecccc
Q 046626 348 LDLSDNDKIKKLPNS-ICELHSLQTLSLGGCRELEEL--PKDIRYLVSLRMFMVSTKQKS-LLESGIGCLSSLRFLMISD 423 (557)
Q Consensus 348 L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~ 423 (557)
|++++|.....+|.. +..+++|++|++++|...... |..++.+++|++|++++|.+. ..|..++.+++|++|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 888887644455543 777888888888887654433 667778888888888888776 4466777888888888887
Q ss_pred cccccccccc-eEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCC---CCChhhccCCCcccceEecc
Q 046626 424 CENLEYFSLE-TLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLL---ELPQWLLQGSTKTLKNLIIR 499 (557)
Q Consensus 424 c~~l~~l~~~-~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~---~lp~~~~~~~l~~L~~L~L~ 499 (557)
|......+.. +..+.+++.|+++.+....... .....+++|++|+++++.-.. ..+..+ ..+++|+.|+|+
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~l~~L~~L~Ls 484 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE---QLFDGLPALQHLNLQGNHFPKGNIQKTNSL--QTLGRLEILVLS 484 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT---TTTTTCTTCCEEECTTCBCGGGEECSSCGG--GGCTTCCEEECT
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCH---HHHhCCCCCCEEECCCCCCCccccccchhh--ccCCCccEEECC
Confidence 6544333322 4566777777777665322211 122457788888888764322 112345 678888888888
Q ss_pred cccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 500 NCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 500 ~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
+|...+..|..++.+++|++|++++| ...+..+..+.++++| .+++++|
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHN--------RLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSS--------CCCGGGGGGGTTCCSC-EEECCSS
T ss_pred CCccCccChhhhccccCCCEEECCCC--------ccCcCChhHhCccccc-EEECcCC
Confidence 88877777888888888888888884 4445556677788888 8888876
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=6.4e-20 Score=182.04 Aligned_cols=258 Identities=18% Similarity=0.190 Sum_probs=207.2
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCcc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHL 345 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L 345 (557)
....++.+.+.++.+... ..+..+++|++|.+..+...... . +.++++|++|++++|.....+..+..+++|
T Consensus 86 ~l~~L~~L~L~~n~i~~~---~~~~~l~~L~~L~l~~n~i~~~~----~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L 157 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDI---SALQNLTNLRELYLNEDNISDIS----P-LANLTKMYSLNLGANHNLSDLSPLSNMTGL 157 (347)
T ss_dssp TCTTCCEEECCSSCCCCC---GGGTTCTTCSEEECTTSCCCCCG----G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTC
T ss_pred cCCcCCEEEccCCcccCc---hHHcCCCcCCEEECcCCcccCch----h-hccCCceeEEECCCCCCcccccchhhCCCC
Confidence 346788999988877664 45889999999999877655322 1 778999999999999766556669999999
Q ss_pred CeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccc
Q 046626 346 RYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 425 (557)
++|++++|. +..++. +..+++|++|++++|. +..++. +..+++|+.+++++|.+..++. ++.+++|++|++++|.
T Consensus 158 ~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 158 NYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK 232 (347)
T ss_dssp CEEECCSSC-CCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred cEEEecCCC-cCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc
Confidence 999999985 777776 8899999999999987 455554 8899999999999999987655 8899999999999864
Q ss_pred cccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccc
Q 046626 426 NLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFM 505 (557)
Q Consensus 426 ~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~ 505 (557)
+..++. +..+.+++.|+++.+..... .....+++|++|+++++ .+..+| .+ ..+++|+.|++++|....
T Consensus 233 -l~~~~~-~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n-~l~~~~-~~--~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 233 -ITDLSP-LANLSQLTWLEIGTNQISDI-----NAVKDLTKLKMLNVGSN-QISDIS-VL--NNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp -CCCCGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSS-CCCCCG-GG--GGCTTCSEEECCSSCCCG
T ss_pred -cCCCcc-hhcCCCCCEEECCCCccCCC-----hhHhcCCCcCEEEccCC-ccCCCh-hh--cCCCCCCEEECcCCcCCC
Confidence 444544 55677888888887753322 23467889999999997 555664 35 688999999999999887
Q ss_pred cCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 506 ALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 506 ~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
..|..++.+++|++|++++|+ ..+..+ +.++++|+.+++++|
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~--------l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNH--------ITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSS--------CCCCGG--GGGCTTCSEESSSCC
T ss_pred cChhHhhccccCCEEEccCCc--------cccccC--hhhhhccceeehhhh
Confidence 888889999999999999974 322222 888999999999987
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=2e-20 Score=182.21 Aligned_cols=222 Identities=17% Similarity=0.134 Sum_probs=133.0
Q ss_pred CCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh---ccccCCCCccCeeeccCCcCccccchhhhcCCcC
Q 046626 293 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL---SREIGNLKHLRYLDLSDNDKIKKLPNSICELHSL 369 (557)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 369 (557)
++++.|.+..+... ...+..+.++++|++|++++|.+..+ +..+..+++|++|++++|. +..+|..+..+++|
T Consensus 28 ~~l~~L~L~~n~l~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCEEECCCCccC---ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 56777777655543 23333466777777888877777644 4556667777788887774 66777777777778
Q ss_pred cEeecCCcCCCcccc--ccccCCCCCcEEEccccccc-ccccCcCCCCCCCeeccccccccc-ccccceEecccCCCccc
Q 046626 370 QTLSLGGCRELEELP--KDIRYLVSLRMFMVSTKQKS-LLESGIGCLSSLRFLMISDCENLE-YFSLETLMLKDCESLNL 445 (557)
Q Consensus 370 ~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~l~~l~l 445 (557)
++|++++|.. ..+| ..+..+++|++|++++|.+. ..+..++.+++|++|++++|.... .+|..+..+.+++.|++
T Consensus 104 ~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 8887777663 3333 35677777778877777766 445557777777777777754333 24544555555666665
Q ss_pred cCccccccccccccccCCCCCcceEEEeCCCCCCCCCh-hhccCCCcccceEecccccccccCCccCCCCC-Ccceeeec
Q 046626 446 NLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ-WLLQGSTKTLKNLIIRNCPNFMALPESLRNLE-ALETLAIG 523 (557)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~-~L~~L~l~ 523 (557)
+.|....... .....+++|++|+++++. +..++. .+ ..+++|+.|+|++|...+..|..+..++ +|++|+++
T Consensus 183 s~n~l~~~~~---~~~~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 183 SQCQLEQLSP---TAFNSLSSLQVLNMSHNN-FFSLDTFPY--KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp TTSCCCEECT---TTTTTCTTCCEEECTTSC-CSBCCSGGG--TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCCCcCCcCH---HHhcCCCCCCEEECCCCc-cCccChhhc--cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 5553221111 112344556666665542 333333 33 4555666666666655555555555553 56666666
Q ss_pred CC
Q 046626 524 GC 525 (557)
Q Consensus 524 ~c 525 (557)
+|
T Consensus 257 ~N 258 (306)
T 2z66_A 257 QN 258 (306)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=4.1e-20 Score=189.52 Aligned_cols=220 Identities=20% Similarity=0.211 Sum_probs=120.8
Q ss_pred CcceEeeCCCChhhhc-cccCCCCccCeeeccCCcCcccc-chhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEc
Q 046626 321 FLRVIDLSETAIEVLS-REIGNLKHLRYLDLSDNDKIKKL-PNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMV 398 (557)
Q Consensus 321 ~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 398 (557)
++++|++++|.+..++ ..+.++++|++|+|++|. +..+ |..|..+++|++|++++|......+..+..+++|++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 4555555555555433 345555555555555553 3332 234555555555555555422222223555555555555
Q ss_pred ccccccccc-cCcCCCCCCCeecccccccccccccc-eEecccCCCccccCccccccccccccccCCCCCcceEEEeCCC
Q 046626 399 STKQKSLLE-SGIGCLSSLRFLMISDCENLEYFSLE-TLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLP 476 (557)
Q Consensus 399 ~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 476 (557)
++|.+..++ ..+..+++|++|++++|+.+..++.. +..+.+++.|+++.|.....+ ....+++|++|+++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~~L~Ls~N- 217 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-----NLTPLIKLDELDLSGN- 217 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-----CCTTCSSCCEEECTTS-
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-----ccCCCcccCEEECCCC-
Confidence 555555332 24555555555555555555444432 334445555555444322111 1245567777777775
Q ss_pred CCCCC-ChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCC
Q 046626 477 PLLEL-PQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDES 555 (557)
Q Consensus 477 ~l~~l-p~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~ 555 (557)
.+..+ |..+ ..+++|+.|+|++|.+....|..+..+++|+.|+|++| .+.......+..+++|+.++++
T Consensus 218 ~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 218 HLSAIRPGSF--QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN--------NLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp CCCEECTTTT--TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS--------CCCCCCTTTTSSCTTCCEEECC
T ss_pred ccCccChhhh--ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC--------CCCccChhHhccccCCCEEEcC
Confidence 33344 4455 66777777777777766666667777777777777773 4444455556677777777777
Q ss_pred CC
Q 046626 556 DN 557 (557)
Q Consensus 556 ~n 557 (557)
+|
T Consensus 288 ~N 289 (440)
T 3zyj_A 288 HN 289 (440)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=7.6e-21 Score=199.57 Aligned_cols=128 Identities=18% Similarity=0.169 Sum_probs=96.6
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccC
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLR 346 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 346 (557)
+..++.+.+.++.+... .+..+..+++|++|.+..+... ...|..+.++++|++|++++|.++.+|.. .+++|+
T Consensus 20 ~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 20 SQKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQ---YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp CTTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCC---EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred cccccEEECCCCccccc-ChhhccccccccEEecCCCccC---CcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 36788888888877654 3356778889999998877654 33455688888999999999988888877 788899
Q ss_pred eeeccCCcCcc-ccchhhhcCCcCcEeecCCcCCCccccccccCCCCC--cEEEcccccc
Q 046626 347 YLDLSDNDKIK-KLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSL--RMFMVSTKQK 403 (557)
Q Consensus 347 ~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~l~~~~~ 403 (557)
+|++++|.... .+|..++.+++|++|++++|.... ..+..+++| +.|++++|.+
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 99999886333 467888889999999998877443 345666666 7777777766
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=9.2e-21 Score=205.67 Aligned_cols=284 Identities=15% Similarity=0.075 Sum_probs=198.0
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhcc-ccCCCCc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSR-EIGNLKH 344 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~ 344 (557)
.+..++.+.+.++.+... .+..+.++++|++|.+..+... ...+..+.++++|++|++++|.+..+|. .++++++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTIS---KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCC---CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccC---ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 457889999998877765 3456888999999999876654 3445668889999999999999998887 5999999
Q ss_pred cCeeeccCCcCccccc-hhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccccccc-Cc--CCCCCCCeec
Q 046626 345 LRYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLES-GI--GCLSSLRFLM 420 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~--~~l~~L~~L~ 420 (557)
|++|++++|. +..+| ..++.+++|++|++++|......|..++.+++|++|++++|.+..++. .+ ..+++|++|+
T Consensus 99 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 99 LTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp CSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 9999999996 55555 679999999999999998777778889999999999999999885543 33 3568999999
Q ss_pred ccccccccccccceEecc---------------------------cCCCccccCccccccccccccccCCCCCcceEEEe
Q 046626 421 ISDCENLEYFSLETLMLK---------------------------DCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVE 473 (557)
Q Consensus 421 l~~c~~l~~l~~~~~~l~---------------------------~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 473 (557)
+++|......+..+..+. +++.|+++.+......... ......++|++|+++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLDLS 256 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT-TGGGGGSCCCEEECT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH-hhccCcCCCCEEECC
Confidence 998643332232222222 3444444443221111111 011122458888888
Q ss_pred CCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccC-CCCCCCCCcccccCceeeC
Q 046626 474 GLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCK-PQTGEDWPKIAHIPQVRID 552 (557)
Q Consensus 474 ~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~~~l~~l~~l 552 (557)
++......|.++ +.+++|++|++++|...+..|..+..+++|+.|++++|..-..+.. .........+..+++|+.+
T Consensus 257 ~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 257 YNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp TSCCCEECTTTT--TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCcCccCcccc--cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 764332234556 6788888888888887777777888888888888887531111000 0111112367789999999
Q ss_pred CCCCC
Q 046626 553 DESDN 557 (557)
Q Consensus 553 ~~~~n 557 (557)
++++|
T Consensus 335 ~l~~n 339 (680)
T 1ziw_A 335 NMEDN 339 (680)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 99887
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=2.1e-20 Score=188.68 Aligned_cols=149 Identities=18% Similarity=0.186 Sum_probs=99.9
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhcc-ccCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSR-EIGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~ 346 (557)
..++.+.+.++.+... ....+..+++|++|.+..+... ...+..+.++++|++|++++|.+..+++ .++.+++|+
T Consensus 45 ~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCchhhC-ChhHhcccccCcEEECCCCccc---ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4566677766655443 1233566778888888765543 2333456777888888888888776644 467788888
Q ss_pred eeeccCCcCccccchh-hhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccc
Q 046626 347 YLDLSDNDKIKKLPNS-ICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISD 423 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 423 (557)
+|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++++|.+..++ ++.+++|+.|++++
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSY 195 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCS
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccc
Confidence 88888774 6677765 467888888888887755555566778888888888887776543 44556666655554
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=7.2e-20 Score=180.43 Aligned_cols=259 Identities=15% Similarity=0.104 Sum_probs=193.2
Q ss_pred eEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCccCee
Q 046626 270 VCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKHLRYL 348 (557)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L 348 (557)
.+.+.+.+..... ++..+ .+.++.|.+..+... ...+..+.++++|++|++++|.+..+ |..++++++|++|
T Consensus 35 l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 35 LRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDIS---ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp TTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred CCEEECCCCCccc--cCCCC--CCCCeEEECCCCcCC---ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 4555655554443 23322 368999999877654 33345688999999999999999976 7789999999999
Q ss_pred eccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccc---ccccCcCCCCCCCeecccccc
Q 046626 349 DLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS---LLESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 349 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~c~ 425 (557)
++++|. +..+|..+. ++|++|++++|......+..+..+++|++|++++|.+. ..+..++.+ +|++|++++|
T Consensus 108 ~L~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n- 182 (332)
T 2ft3_A 108 YISKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA- 182 (332)
T ss_dssp ECCSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-
T ss_pred ECCCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-
Confidence 999985 788888665 89999999998855444446899999999999999886 456677777 9999999985
Q ss_pred cccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCCh-hhccCCCcccceEeccccccc
Q 046626 426 NLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ-WLLQGSTKTLKNLIIRNCPNF 504 (557)
Q Consensus 426 ~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~~~l~~L~~L~L~~c~~~ 504 (557)
.+..+|.... .+++.|+++.|....... .....+++|++|+++++ .+..++. ++ ..+++|+.|+|++|..
T Consensus 183 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N~l- 253 (332)
T 2ft3_A 183 KLTGIPKDLP--ETLNELHLDHNKIQAIEL---EDLLRYSKLYRLGLGHN-QIRMIENGSL--SFLPTLRELHLDNNKL- 253 (332)
T ss_dssp BCSSCCSSSC--SSCSCCBCCSSCCCCCCT---TSSTTCTTCSCCBCCSS-CCCCCCTTGG--GGCTTCCEEECCSSCC-
T ss_pred CCCccCcccc--CCCCEEECCCCcCCccCH---HHhcCCCCCCEEECCCC-cCCcCChhHh--hCCCCCCEEECCCCcC-
Confidence 5666776543 688899988875433221 12356789999999986 4455554 56 7899999999999975
Q ss_pred ccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccc------cCceeeCCCCCC
Q 046626 505 MALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAH------IPQVRIDDESDN 557 (557)
Q Consensus 505 ~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~------l~~l~~l~~~~n 557 (557)
+.+|..+..+++|++|++++|+ +.+.....+.. .++|+.+++++|
T Consensus 254 ~~lp~~l~~l~~L~~L~l~~N~--------l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 254 SRVPAGLPDLKLLQVVYLHTNN--------ITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp CBCCTTGGGCTTCCEEECCSSC--------CCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred eecChhhhcCccCCEEECCCCC--------CCccChhHccccccccccccccceEeecC
Confidence 5899999999999999999964 22222222222 456777777765
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=6.4e-20 Score=180.67 Aligned_cols=241 Identities=16% Similarity=0.121 Sum_probs=186.3
Q ss_pred CCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCccCeeeccCCcCccccchhhhcCCcCcE
Q 046626 293 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQT 371 (557)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 371 (557)
+.++.|.+..+... ...+..+.++++|++|++++|.+..+ |..++.+++|++|++++|. +..+|..+. ++|++
T Consensus 52 ~~l~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKIT---EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCC---CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCE
T ss_pred CCCeEEECCCCcCC---EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccE
Confidence 68899999877654 23344578899999999999999977 7789999999999999985 888887664 89999
Q ss_pred eecCCcCCCccccccccCCCCCcEEEccccccc---ccccCcCCCCCCCeecccccccccccccceEecccCCCccccCc
Q 046626 372 LSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS---LLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLN 448 (557)
Q Consensus 372 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~ 448 (557)
|++++|......+..+..+++|++|++++|.+. ..+..++.+++|++|++++| .+..+|.... .+++.|+++.|
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n 202 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGN 202 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTS
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCC
Confidence 999999866555567899999999999999886 45677899999999999985 4666765543 78888888877
Q ss_pred cccccccccccccCCCCCcceEEEeCCCCCCCCCh-hhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCc
Q 046626 449 IEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ-WLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPA 527 (557)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 527 (557)
....... .....+++|++|+++++. +..++. ++ ..+++|++|+|++|.. ..+|.++..+++|++|++++|+
T Consensus 203 ~l~~~~~---~~~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~- 274 (330)
T 1xku_A 203 KITKVDA---ASLKGLNNLAKLGLSFNS-ISAVDNGSL--ANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNN- 274 (330)
T ss_dssp CCCEECT---GGGTTCTTCCEEECCSSC-CCEECTTTG--GGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSC-
T ss_pred cCCccCH---HHhcCCCCCCEEECCCCc-CceeChhhc--cCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECCCCc-
Confidence 5332211 223677899999999864 445544 56 7789999999999974 5899999999999999999964
Q ss_pred cccccCCCCCCCCCcc------cccCceeeCCCCCC
Q 046626 528 LSERCKPQTGEDWPKI------AHIPQVRIDDESDN 557 (557)
Q Consensus 528 l~~~~~~~~~~~~~~~------~~l~~l~~l~~~~n 557 (557)
+.+.....+ ...++++.+++++|
T Consensus 275 -------i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 275 -------ISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp -------CCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred -------CCccChhhcCCcccccccccccceEeecC
Confidence 222222222 22466777777766
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1.5e-19 Score=191.47 Aligned_cols=105 Identities=27% Similarity=0.240 Sum_probs=76.3
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccC
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLR 346 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 346 (557)
+..++.+.+.++.+... .+..+.++++|++|.+..+... ...+..|.++++|++|++++|.++.+|.. .+++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 51 PPRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIR---SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp CTTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCC---EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCC---cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 46778888887776654 3356778888888888766554 33345577788888888888888877776 778888
Q ss_pred eeeccCCcCcccc--chhhhcCCcCcEeecCCcC
Q 046626 347 YLDLSDNDKIKKL--PNSICELHSLQTLSLGGCR 378 (557)
Q Consensus 347 ~L~l~~~~~~~~l--p~~~~~l~~L~~L~l~~~~ 378 (557)
+|++++|. +..+ |..++.+++|++|++++|.
T Consensus 125 ~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 125 HLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp EEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred EEECCCCC-ccccCchHhhcccCcccEEecCCCc
Confidence 88888875 5543 4677778888887777765
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=3.5e-20 Score=197.41 Aligned_cols=242 Identities=17% Similarity=0.114 Sum_probs=140.9
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~ 346 (557)
..++.+.+.++.+... .+..+..+++|++|.+..+... ...+..+.++++|++|++++|.+..+|+. ++++++|+
T Consensus 51 ~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIE---EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp CCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCC---CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3456666665554443 2233567788888888766544 23344577788888888888888866554 57888888
Q ss_pred eeeccCCcCccccchh-hhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccc
Q 046626 347 YLDLSDNDKIKKLPNS-ICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 425 (557)
+|+|++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++++|.+..++ ++.+++|+.|++++|.
T Consensus 127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence 88888875 6677665 478888888888888766666667888888888888888777553 4455666666555431
Q ss_pred cccccc----cceEe-------------cccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccC
Q 046626 426 NLEYFS----LETLM-------------LKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQG 488 (557)
Q Consensus 426 ~l~~l~----~~~~~-------------l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~ 488 (557)
+..++ +..+. ..+++.|+++.|..... .....+++|++|+++++......|..+ +
T Consensus 204 -l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~ 275 (597)
T 3oja_B 204 -LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPF--V 275 (597)
T ss_dssp -CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGG--T
T ss_pred -cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-----hhhccCCCCCEEECCCCccCCCCHHHh--c
Confidence 11110 00000 12233444433322111 112344556666665543222234444 4
Q ss_pred CCcccceEecccccccccCCccCCCCCCcceeeecCC
Q 046626 489 STKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGC 525 (557)
Q Consensus 489 ~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c 525 (557)
.+++|+.|+|++|... .+|..+..+++|+.|+|++|
T Consensus 276 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 276 KMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp TCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSS
T ss_pred CccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCC
Confidence 5555555555555432 34444445555555555554
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=7.6e-20 Score=184.53 Aligned_cols=261 Identities=17% Similarity=0.136 Sum_probs=163.3
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~ 346 (557)
..++.+.+.++.+... .+..+..+++|++|.+..+... ...+..+.++++|++|++++|.+..+|.. ++++++|+
T Consensus 69 ~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCC---cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 4677788877766543 2346778889999998876654 33445577888999999999998888876 48888999
Q ss_pred eeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccc-------------------ccc
Q 046626 347 YLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS-------------------LLE 407 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-------------------~~~ 407 (557)
+|++++|......|..+..+++|++|++++|... .+ .++.+++|++|++++|.+. .+|
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BC--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCC-cc--ccccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 9999988633344556888899999999887643 33 2445555555555555443 332
Q ss_pred cCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhcc
Q 046626 408 SGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQ 487 (557)
Q Consensus 408 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~ 487 (557)
.. ..++|++|++++|. +... ..+..+.+++.|+++.|...... ......+++|++|+++++ .+..+|..+
T Consensus 222 ~~--~~~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~-- 291 (390)
T 3o6n_A 222 GP--VNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIM---YHPFVKMQRLERLYISNN-RLVALNLYG-- 291 (390)
T ss_dssp CC--CCSSCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEE---SGGGTTCSSCCEEECCSS-CCCEEECSS--
T ss_pred cc--ccccccEEECCCCC-Cccc-HHHcCCCCccEEECCCCcCCCcC---hhHccccccCCEEECCCC-cCcccCccc--
Confidence 21 12455555555532 2222 12334455666666655422111 112245567777777664 445556555
Q ss_pred CCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 488 GSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 488 ~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
..+++|+.|+|++|.. ..+|..+..+++|++|++++|+ +... .+..+++|+.+++++|
T Consensus 292 ~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~--------i~~~---~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS--------IVTL---KLSTHHTLKNLTLSHN 349 (390)
T ss_dssp SCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC--------CCCC---CCCTTCCCSEEECCSS
T ss_pred CCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCc--------ccee---CchhhccCCEEEcCCC
Confidence 5667777777777753 3566666667777777777753 2222 2566778888888776
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=200.10 Aligned_cols=254 Identities=17% Similarity=0.084 Sum_probs=169.0
Q ss_pred CCCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhh-hccc--cCC
Q 046626 265 SIPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEV-LSRE--IGN 341 (557)
Q Consensus 265 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~ 341 (557)
.....++.+.+.++.....-.+..+.++++|++|.+..+... ...|..+.++++|++|++++|.+.. .|.. +++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY---FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC---EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc---ccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 345677788887764433212456778888888888866654 3345667888888888888888874 4544 788
Q ss_pred CCccCeeeccCCcCcccc-chhhhcCCcCcEeecCCcCCCccccccccCC--CCCcEEEccccccc-ccccCcCCC----
Q 046626 342 LKHLRYLDLSDNDKIKKL-PNSICELHSLQTLSLGGCRELEELPKDIRYL--VSLRMFMVSTKQKS-LLESGIGCL---- 413 (557)
Q Consensus 342 l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~~L~l~~~~~~-~~~~~~~~l---- 413 (557)
+++|++|++++|...... +..++++++|++|++++|......|..+..+ ++|+.|++++|.+. ..|..++.+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 888888888888633332 3568888888888888877665566666555 55555555555444 223333333
Q ss_pred ----------------------------------------------------------------CCCCeecccccccccc
Q 046626 414 ----------------------------------------------------------------SSLRFLMISDCENLEY 429 (557)
Q Consensus 414 ----------------------------------------------------------------~~L~~L~l~~c~~l~~ 429 (557)
++|++|++++|.....
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 3444444444332222
Q ss_pred cccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCc
Q 046626 430 FSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPE 509 (557)
Q Consensus 430 l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~ 509 (557)
.+..+..+.+++.|+++.|....... .....+++|++|+++++.-....|..+ ..+++|+.|++++|......+.
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIAD---EAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECT---TTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCSCCCCCCCSS
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCCh---HHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCCCCCCccChh
Confidence 23334556677777777765332211 123567899999999975433346667 7899999999999987666667
Q ss_pred cCCCCCCcceeeecCCC
Q 046626 510 SLRNLEALETLAIGGCP 526 (557)
Q Consensus 510 ~l~~l~~L~~L~l~~c~ 526 (557)
.+..+++|+.|++++|.
T Consensus 357 ~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSCSCCCCCEEEEETCC
T ss_pred hhcCCCCCCEEECCCCC
Confidence 79999999999999974
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=193.24 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=53.3
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhcc-ccCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSR-EIGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~ 346 (557)
..++.+.+.++.+... .+..+.++++|++|.+..+... ...+..+.++++|++|++++|.+..++. .++++++|+
T Consensus 52 ~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 52 PELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp SSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred CCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCC---ccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 4455555555544332 1233455566666665544332 1222335555555555555555554443 355555555
Q ss_pred eeeccCCcCcc-ccchhhhcCCcCcEeecCCcC
Q 046626 347 YLDLSDNDKIK-KLPNSICELHSLQTLSLGGCR 378 (557)
Q Consensus 347 ~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~~~ 378 (557)
+|++++|.... .+|..++++++|++|++++|.
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 55555553222 245555555555555555543
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=5e-19 Score=181.56 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=85.2
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCe
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRY 347 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 347 (557)
..++.+.+.++.+... + +..+++|+.|.+..+..... + +.++++|++|++++|.+..+| ++.+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~---~-~~~l~~L~~L~Ls~N~l~~~----~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL---D-LSQNTNLTYLACDSNKLTNL----D--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCC----C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeE---c-cccCCCCCEEECcCCCCcee----e--cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 4555666655555443 1 45566666666665544321 1 455666666666666666553 556666666
Q ss_pred eeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccc
Q 046626 348 LDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENL 427 (557)
Q Consensus 348 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 427 (557)
|++++|. +..+| ++.+++|++|++++|..+..+ .++.+++|++|++++|.+..+| ++.+++|+.|++++| .+
T Consensus 132 L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N-~l 203 (457)
T 3bz5_A 132 LNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NI 203 (457)
T ss_dssp EECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSS-CC
T ss_pred EECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCC-cC
Confidence 6666653 44443 555666666666665444444 3555566666666666555544 555555555555543 22
Q ss_pred cccccceEecccCCCccccCc
Q 046626 428 EYFSLETLMLKDCESLNLNLN 448 (557)
Q Consensus 428 ~~l~~~~~~l~~l~~l~l~~~ 448 (557)
..++ +..+.+++.|+++.|
T Consensus 204 ~~~~--l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 204 TKLD--LNQNIQLTFLDCSSN 222 (457)
T ss_dssp SCCC--CTTCTTCSEEECCSS
T ss_pred Ceec--cccCCCCCEEECcCC
Confidence 3222 223344444444444
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=4.5e-19 Score=172.63 Aligned_cols=232 Identities=17% Similarity=0.114 Sum_probs=183.7
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCcc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHL 345 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L 345 (557)
.+..++.+.+.++.+... ....+.++++|+.|.+..+...... ..+..+.++++|++|++++|.+..+|..+..+++|
T Consensus 26 ~~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 26 IPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKG-CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEE-EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCccc-CcccccccccccCEEECCCCccccChhhcCCCCCC
Confidence 456788999988877653 2234688999999999877654221 11233557899999999999999999999999999
Q ss_pred CeeeccCCcCccccch--hhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccc--cccCcCCCCCCCeecc
Q 046626 346 RYLDLSDNDKIKKLPN--SICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSL--LESGIGCLSSLRFLMI 421 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l 421 (557)
++|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++++|.+.. +|..++.+++|++|++
T Consensus 104 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 999999986 666663 68899999999999998777778889999999999999999874 7889999999999999
Q ss_pred cccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCC-cccceEeccc
Q 046626 422 SDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGST-KTLKNLIIRN 500 (557)
Q Consensus 422 ~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l-~~L~~L~L~~ 500 (557)
++|......+..+..+.+++.|+++.|........ ....+++|++|+++++.-....|..+ ..+ ++|++|+|++
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQ 257 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG---GGTTCTTCCEEECTTSCCCBCSSSSC--CCCCTTCCEEECTT
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh---hccCcccCCEeECCCCCCcccCHHHH--HhhhccCCEEEccC
Confidence 99754443355667788899999988864332221 23567899999999976554556666 566 5999999999
Q ss_pred ccccc
Q 046626 501 CPNFM 505 (557)
Q Consensus 501 c~~~~ 505 (557)
|+...
T Consensus 258 N~~~~ 262 (306)
T 2z66_A 258 NDFAC 262 (306)
T ss_dssp CCEEC
T ss_pred CCeec
Confidence 98654
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=7.2e-20 Score=195.93 Aligned_cols=265 Identities=17% Similarity=0.076 Sum_probs=197.6
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCe
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRY 347 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 347 (557)
..++.+.+.++..... + .+..+++|+.+.+..+... .+| .+ .+++|+.|++++|.... +..+..+++|++
T Consensus 285 ~~L~~L~l~~~~~~~l--~-~l~~~~~L~~L~l~~n~l~----~lp-~~-~l~~L~~L~l~~n~~~~-~~~~~~l~~L~~ 354 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYL--E-DVPKHFKWQSLSIIRCQLK----QFP-TL-DLPFLKSLTLTMNKGSI-SFKKVALPSLSY 354 (606)
T ss_dssp TTCSEEEEESCCCCCC--C-CCCTTCCCSEEEEESCCCS----SCC-CC-CCSSCCEEEEESCSSCE-ECCCCCCTTCCE
T ss_pred CCCCEEEecCccchhh--h-hccccccCCEEEcccccCc----ccc-cC-CCCccceeeccCCcCcc-chhhccCCCCCE
Confidence 4555666666655443 2 5666777777777766542 122 23 67788888888774332 225678889999
Q ss_pred eeccCCcCcccc---chhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccc--cCcCCCCCCCeeccc
Q 046626 348 LDLSDNDKIKKL---PNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLE--SGIGCLSSLRFLMIS 422 (557)
Q Consensus 348 L~l~~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~ 422 (557)
|++++|. +..+ |..+..+++|++|++++|. +..+|..+..+++|+.|++++|.+...+ ..++.+++|++|+++
T Consensus 355 L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 355 LDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred EECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 9999885 5444 7889999999999999987 6668888999999999999999988543 478899999999999
Q ss_pred ccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccc
Q 046626 423 DCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCP 502 (557)
Q Consensus 423 ~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~ 502 (557)
+|......|..+..+.+++.|+++.|..... ........+++|++|+++++.-....|.++ ..+++|++|+|++|.
T Consensus 433 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN--TLSNVFANTTNLTFLDLSKCQLEQISWGVF--DTLHRLQLLNMSHNN 508 (606)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSC
T ss_pred CCCCCccchhhhcCCCCCCEEECCCCcCCCc--chHHhhccCCCCCEEECCCCcCCccChhhh--cccccCCEEECCCCc
Confidence 9876666677777788899999888754321 112223677899999999975444456667 789999999999999
Q ss_pred ccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccC-ceeeCCCCCC
Q 046626 503 NFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIP-QVRIDDESDN 557 (557)
Q Consensus 503 ~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~-~l~~l~~~~n 557 (557)
..+..|..++.+++|++|++++|. +.. .+..+..++ +|+.+++++|
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~--------l~~-~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNR--------IET-SKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSC--------CCC-EESCGGGSCTTCCEEECCSC
T ss_pred CCCcCHHHccCCCcCCEEECCCCc--------Ccc-cCHhHhhhcccCcEEEccCC
Confidence 887779999999999999999963 322 223377787 5999999887
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1.9e-20 Score=197.93 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=112.1
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCcc
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKHL 345 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L 345 (557)
+..++.+.+.++.+... .+..+.++++|++|.+..+... ...+..+.++++|++|++++|.+..+++. ++++++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRIN---TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcC---ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 45778888887776554 3455778888888888766554 23445577888888888888888876655 8888888
Q ss_pred CeeeccCCcCcc--ccchhhhcCCcCcEeecCCcCCCcccc-ccccCCCCCcEEEccccccc-ccccCcCCCCCCCeecc
Q 046626 346 RYLDLSDNDKIK--KLPNSICELHSLQTLSLGGCRELEELP-KDIRYLVSLRMFMVSTKQKS-LLESGIGCLSSLRFLMI 421 (557)
Q Consensus 346 ~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l 421 (557)
++|++++|. +. ..|..++.+++|++|++++|.....+| ..++.+++|++|++++|.+. ..|..++.+++|++|++
T Consensus 101 ~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 101 KYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred cEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 888888885 44 346678888888888888887666666 46788888888888888777 45667777766666666
Q ss_pred ccc
Q 046626 422 SDC 424 (557)
Q Consensus 422 ~~c 424 (557)
+++
T Consensus 180 ~~n 182 (549)
T 2z81_A 180 HLS 182 (549)
T ss_dssp ECS
T ss_pred ccC
Confidence 543
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=2.6e-19 Score=191.59 Aligned_cols=243 Identities=17% Similarity=0.056 Sum_probs=180.7
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh---ccccCCCCc
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL---SREIGNLKH 344 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l---~~~~~~l~~ 344 (557)
..++.+.+.++.... ++ .+ .+++|+.+.+..+...... .+..+++|++|++++|.+... |..+..+++
T Consensus 307 ~~L~~L~l~~n~l~~--lp-~~-~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~ 377 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQ--FP-TL-DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377 (606)
T ss_dssp CCCSEEEEESCCCSS--CC-CC-CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred ccCCEEEcccccCcc--cc-cC-CCCccceeeccCCcCccch-----hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence 467788888887743 34 34 8888888888766322111 356788888999988888755 677888888
Q ss_pred cCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCcccc-ccccCCCCCcEEEccccccc-ccccCcCCCCCCCeeccc
Q 046626 345 LRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELP-KDIRYLVSLRMFMVSTKQKS-LLESGIGCLSSLRFLMIS 422 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 422 (557)
|++|++++|. +..+|..+..+++|++|++++|......| ..++.+++|++|++++|.+. ..|..++.+++|++|+++
T Consensus 378 L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 378 LRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 9999998885 77788778888889999998887666656 57788888999999888887 456778888889999988
Q ss_pred ccccccc-cccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccc
Q 046626 423 DCENLEY-FSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNC 501 (557)
Q Consensus 423 ~c~~l~~-l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c 501 (557)
+|..... +|..+..+.+++.|+++.|....... .....+++|++|+++++.-....|..+ ..+++|+.|+|++|
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW---GVFDTLHRLQLLNMSHNNLLFLDSSHY--NQLYSLSTLDCSFN 531 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCSCEEGGGT--TTCTTCCEEECTTS
T ss_pred CCcCCCcchHHhhccCCCCCEEECCCCcCCccCh---hhhcccccCCEEECCCCcCCCcCHHHc--cCCCcCCEEECCCC
Confidence 8755442 56667777888888888775332211 123567888888888875443446777 77888999999888
Q ss_pred cccccCCccCCCCC-CcceeeecCCC
Q 046626 502 PNFMALPESLRNLE-ALETLAIGGCP 526 (557)
Q Consensus 502 ~~~~~lp~~l~~l~-~L~~L~l~~c~ 526 (557)
.. ..+|..+..++ +|++|++++||
T Consensus 532 ~l-~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 532 RI-ETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CC-CCEESCGGGSCTTCCEEECCSCC
T ss_pred cC-cccCHhHhhhcccCcEEEccCCC
Confidence 74 46777788887 58899988865
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.3e-20 Score=184.53 Aligned_cols=251 Identities=17% Similarity=0.169 Sum_probs=181.4
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCcc
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKHL 345 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L 345 (557)
+..++.+.+.++.+... ....+.++++|++|.+..+... ...+..+.++++|++|++++|.++.+|.. ++++++|
T Consensus 51 ~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGIN---TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccC---ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 45788888887776653 2235778889999998876554 23345577888999999999998888776 7888999
Q ss_pred CeeeccCCcCccccch--hhhcCCcCcEeecCCcCCCccc-cccccCCCCCcEEEcccccccc-cccCcCCCCCCCeecc
Q 046626 346 RYLDLSDNDKIKKLPN--SICELHSLQTLSLGGCRELEEL-PKDIRYLVSLRMFMVSTKQKSL-LESGIGCLSSLRFLMI 421 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l 421 (557)
++|++++|. +..+|. .+..+++|++|++++|..+..+ |..++.+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 127 ~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 127 TFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp SEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 999999885 777776 6788899999999988555554 5678888999999999888874 4778888999999999
Q ss_pred cccccccccccceE-ecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCC----CCCChhhccCCCcccceE
Q 046626 422 SDCENLEYFSLETL-MLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPL----LELPQWLLQGSTKTLKNL 496 (557)
Q Consensus 422 ~~c~~l~~l~~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~lp~~~~~~~l~~L~~L 496 (557)
++|. +..++.... .+.+++.|+++.|..................++.+.+.++.-. ..+|.++ ..+++|+.|
T Consensus 206 ~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~L~~L 282 (353)
T 2z80_A 206 HMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLEL 282 (353)
T ss_dssp ECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTTCCEE
T ss_pred CCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH--hcccCCCEE
Confidence 8754 455554322 3566777777766533222222222234566777777765321 1467777 788999999
Q ss_pred ecccccccccCCcc-CCCCCCcceeeecCCC
Q 046626 497 IIRNCPNFMALPES-LRNLEALETLAIGGCP 526 (557)
Q Consensus 497 ~L~~c~~~~~lp~~-l~~l~~L~~L~l~~c~ 526 (557)
+|++|... .+|.. ++.+++|++|++++|+
T Consensus 283 ~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 99999755 67776 4889999999999976
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=187.80 Aligned_cols=154 Identities=14% Similarity=0.056 Sum_probs=91.5
Q ss_pred cCCCCCcEEEcccccccc-cccCcCCCCCCCeeccccccccc--ccccceEecccCCCccccCccccc-cccccccccCC
Q 046626 388 RYLVSLRMFMVSTKQKSL-LESGIGCLSSLRFLMISDCENLE--YFSLETLMLKDCESLNLNLNIEME-GEESHCDRNKT 463 (557)
Q Consensus 388 ~~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~l~~l~~l~l~~~~~~~-~~~~~~~~~~~ 463 (557)
..+++|++|++++|.+.. +|..++.+++|++|++++|.... .+|..+..+.+++.|+++.|.... .+.. ....
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---hhcc
Confidence 344555555555555552 45555566666666665543221 233334455556666665554322 1111 1234
Q ss_pred CCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcc
Q 046626 464 RLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKI 543 (557)
Q Consensus 464 ~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 543 (557)
+++|++|+++++.-...+|..+ .++|+.|+|++|... .+|..+..+++|++|++++| .+.......+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N--------~l~~l~~~~~ 464 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN--------QLKSVPDGIF 464 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSC----CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS--------CCCCCCTTTT
T ss_pred CccCCEEECcCCCCCcchhhhh----cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC--------cCCccCHHHh
Confidence 5677777777654333444433 268888888888744 78887788899999999986 3332222347
Q ss_pred cccCceeeCCCCCC
Q 046626 544 AHIPQVRIDDESDN 557 (557)
Q Consensus 544 ~~l~~l~~l~~~~n 557 (557)
.++++|+.+++++|
T Consensus 465 ~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 465 DRLTSLQKIWLHTN 478 (520)
T ss_dssp TTCTTCCEEECCSS
T ss_pred ccCCcccEEECcCC
Confidence 88999999999887
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.9e-19 Score=191.66 Aligned_cols=262 Identities=16% Similarity=0.119 Sum_probs=175.1
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCcc
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKHL 345 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L 345 (557)
...++.+.+.++.+... .+..+..+++|++|.+..+... ...+..+.++++|++|++++|.+..+|+. ++++++|
T Consensus 74 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149 (597)
T ss_dssp CCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCC---CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence 35788899988877654 3346789999999999877654 34556688999999999999999999887 5899999
Q ss_pred CeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccc-------------------ccccc
Q 046626 346 RYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTK-------------------QKSLL 406 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-------------------~~~~~ 406 (557)
++|++++|......|..++.+++|++|++++|... .+| ++.+++|+.|++++| .+..+
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccc
Confidence 99999999744455667999999999999998743 333 334455555444444 33333
Q ss_pred ccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhc
Q 046626 407 ESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLL 486 (557)
Q Consensus 407 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~ 486 (557)
+..+ .++|+.|++++|.. ... ..+..+.+++.|+++.|...... ......+++|++|+++++ .+..+|..+
T Consensus 227 ~~~~--~~~L~~L~L~~n~l-~~~-~~l~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N-~l~~l~~~~- 297 (597)
T 3oja_B 227 RGPV--NVELTILKLQHNNL-TDT-AWLLNYPGLVEVDLSYNELEKIM---YHPFVKMQRLERLYISNN-RLVALNLYG- 297 (597)
T ss_dssp ECSC--CSCCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCEEE---SGGGTTCSSCCEEECTTS-CCCEEECSS-
T ss_pred cccc--CCCCCEEECCCCCC-CCC-hhhccCCCCCEEECCCCccCCCC---HHHhcCccCCCEEECCCC-CCCCCCccc-
Confidence 3222 24556666655432 221 23445566677777666432221 112245677777777774 455666665
Q ss_pred cCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 487 QGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 487 ~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
..+++|+.|+|++|... .+|..++.+++|+.|++++|. +.+. .+..+++|+.+++++|
T Consensus 298 -~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~--------l~~~---~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 298 -QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS--------IVTL---KLSTHHTLKNLTLSHN 355 (597)
T ss_dssp -SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC--------CCCC---CCCTTCCCSEEECCSS
T ss_pred -ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC--------CCCc---ChhhcCCCCEEEeeCC
Confidence 56777777777777643 567667777777777777753 2222 2556677777777766
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=4.7e-19 Score=170.58 Aligned_cols=200 Identities=19% Similarity=0.140 Sum_probs=127.1
Q ss_pred CCCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCcccc-chhhhcCCcCcEeecCCcCCCccc-cccccCCCCCcE
Q 046626 319 SQFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKL-PNSICELHSLQTLSLGGCRELEEL-PKDIRYLVSLRM 395 (557)
Q Consensus 319 ~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~ 395 (557)
.++|++|+++++.+..++. .+..+++|++|++++|. +..+ |..+..+++|++|++++|..+..+ |..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 4679999999999997764 58899999999999986 5544 778899999999999998745555 778889999999
Q ss_pred EEccccccccc-ccCcCCCCCCCeecccccccccccccc-eEecccCCCccccCccccccccccccccCCCCCcceEEEe
Q 046626 396 FMVSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYFSLE-TLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVE 473 (557)
Q Consensus 396 L~l~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 473 (557)
|++++|.+..+ |..++.+++|++|++++|. +..++.. +..+.+++.|+++.|........ ....+++|++|+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPER---AFRGLHSLDRLLLH 185 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHH---HhcCccccCEEECC
Confidence 99999998855 5678889999999999853 4444332 33444555555544432111110 11234455555555
Q ss_pred CCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCC
Q 046626 474 GLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGC 525 (557)
Q Consensus 474 ~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c 525 (557)
++.-....|.++ ..+++|+.|++++|...+..+..+..+++|+.|++++|
T Consensus 186 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 186 QNRVAHVHPHAF--RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp SSCCCEECTTTT--TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CCcccccCHhHc--cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 432221223344 44455555555555433322233444555555555554
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=4.5e-20 Score=183.50 Aligned_cols=248 Identities=17% Similarity=0.126 Sum_probs=178.8
Q ss_pred CCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhc-cccCCCCccCeeeccCCcCccccchh-hhcCCcCc
Q 046626 293 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLS-REIGNLKHLRYLDLSDNDKIKKLPNS-ICELHSLQ 370 (557)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~ 370 (557)
+++++|.+..+... ...+..+.++++|++|++++|.+..++ ..+.++++|++|++++|. +..+|.. ++.+++|+
T Consensus 52 ~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcCc---ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCC
Confidence 58899999877654 233445788999999999999998764 568999999999999985 7777766 88899999
Q ss_pred EeecCCcCCCccccc--cccCCCCCcEEEcccc-ccccc-ccCcCCCCCCCeecccccccccccccceEecccCCCcccc
Q 046626 371 TLSLGGCRELEELPK--DIRYLVSLRMFMVSTK-QKSLL-ESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLN 446 (557)
Q Consensus 371 ~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~-~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~ 446 (557)
+|++++|. +..+|. .++.+++|++|++++| .+..+ +..++.+++|++|++++|......|..+..+.+++.|+++
T Consensus 128 ~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 99999986 456765 6889999999999998 45544 5678899999999999875444446566667777777777
Q ss_pred CccccccccccccccCCCCCcceEEEeCCCCCCCCCh-hhc-cCCCcccceEecccccccc----cCCccCCCCCCccee
Q 046626 447 LNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ-WLL-QGSTKTLKNLIIRNCPNFM----ALPESLRNLEALETL 520 (557)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~-~~~l~~L~~L~L~~c~~~~----~lp~~l~~l~~L~~L 520 (557)
.|.....+... ...+++|++|+++++. +..++. .+. ......++.++++++.... .+|.++..+++|++|
T Consensus 207 ~n~l~~~~~~~---~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 207 MKQHILLLEIF---VDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp CSCSTTHHHHH---HHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred CCccccchhhh---hhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 66532211111 1236788888888753 333321 110 1235567777777766443 467778899999999
Q ss_pred eecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 521 AIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 521 ~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
++++| .+.......+..+++|+.+++++|
T Consensus 283 ~Ls~N--------~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 283 EFSRN--------QLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp ECCSS--------CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCC--------CCCccCHHHHhcCCCCCEEEeeCC
Confidence 99996 343333334688999999999987
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=9e-19 Score=180.16 Aligned_cols=224 Identities=18% Similarity=0.166 Sum_probs=124.3
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~ 346 (557)
..++.+.+.++.+... .+..+.++++|+.|.+..+... ...+..|.++++|++|++++|.+..+|.. +..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIR---QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccC---CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 3455555555544432 2233445555555555544332 12223345555555555555555544433 45555555
Q ss_pred eeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccc-cccCCCCCcEEEcccccccccccCcCCCCCCCeeccccc
Q 046626 347 YLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDC 424 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c 424 (557)
+|+|++|. +..+|. .+..+++|++|++++|..+..+|. .+..+++|++|++++|.+..+| .+..+++|++|++++|
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN 228 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTS
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCC
Confidence 55555553 333332 345555555555555544544443 2445555555555555555443 3455555555555553
Q ss_pred ccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccc
Q 046626 425 ENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNF 504 (557)
Q Consensus 425 ~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~ 504 (557)
......+ .....+++|++|+++++.-....|..+ ..+++|+.|+|++|...
T Consensus 229 ~l~~~~~---------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 229 HFPEIRP---------------------------GSFHGLSSLKKLWVMNSQVSLIERNAF--DGLASLVELNLAHNNLS 279 (452)
T ss_dssp CCSEECG---------------------------GGGTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCS
T ss_pred cCcccCc---------------------------ccccCccCCCEEEeCCCcCceECHHHh--cCCCCCCEEECCCCcCC
Confidence 2211111 112456788888888754332334555 77899999999999866
Q ss_pred ccCCccCCCCCCcceeeecCCC
Q 046626 505 MALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 505 ~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
...+..+..+++|+.|++++||
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSC
T ss_pred ccChHHhccccCCCEEEccCCC
Confidence 5555667889999999999876
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=9.9e-19 Score=179.20 Aligned_cols=224 Identities=17% Similarity=0.200 Sum_probs=134.0
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhcc-ccCCCCcc
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSR-EIGNLKHL 345 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L 345 (557)
+..++.+.+.++.+... .+..+.++++|+.|.+..+... ...+..|.++++|++|++++|.++.+|. .+..+++|
T Consensus 63 ~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 63 STNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIR---TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp CTTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCC---EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred CCCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCC---ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence 34455566655555443 2234555666666666554433 2223345556666666666666665544 35566666
Q ss_pred CeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccc-cccCCCCCcEEEcccccccccccCcCCCCCCCeecccc
Q 046626 346 RYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISD 423 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 423 (557)
++|++++|. +..+|. .+..+++|++|++++|..+..+|. .+..+++|++|++++|.+..+| .+..+++|++|++++
T Consensus 139 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 139 KELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSG 216 (440)
T ss_dssp CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTT
T ss_pred ceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCC
Confidence 666666654 444433 455666666666666555555544 3556666666666666666554 355666666666665
Q ss_pred cccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCC-ChhhccCCCcccceEeccccc
Q 046626 424 CENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL-PQWLLQGSTKTLKNLIIRNCP 502 (557)
Q Consensus 424 c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~~~~~~l~~L~~L~L~~c~ 502 (557)
|. +..++ ......+++|++|+++++. +..+ |..+ ..+++|+.|+|++|.
T Consensus 217 N~-l~~~~--------------------------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 217 NH-LSAIR--------------------------PGSFQGLMHLQKLWMIQSQ-IQVIERNAF--DNLQSLVEINLAHNN 266 (440)
T ss_dssp SC-CCEEC--------------------------TTTTTTCTTCCEEECTTCC-CCEECTTSS--TTCTTCCEEECTTSC
T ss_pred Cc-cCccC--------------------------hhhhccCccCCEEECCCCc-eeEEChhhh--cCCCCCCEEECCCCC
Confidence 42 22221 0112456778888887753 4444 4445 778899999999998
Q ss_pred ccccCCccCCCCCCcceeeecCCC
Q 046626 503 NFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 503 ~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
.....+..+..+++|+.|++++||
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCccChhHhccccCCCEEEcCCCC
Confidence 766566667889999999999877
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=189.87 Aligned_cols=221 Identities=17% Similarity=0.101 Sum_probs=117.9
Q ss_pred hcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEE
Q 046626 317 SKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMF 396 (557)
Q Consensus 317 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 396 (557)
..+++|++|+++++.+..+|..+..+ +|++|++++|. +..+|. ..+++|++|++++|......|. ..+++|++|
T Consensus 279 ~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L 352 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL 352 (570)
T ss_dssp GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEE
Confidence 34455666666666666666555555 66666666553 445543 2344444444444332222221 345555555
Q ss_pred Eccccccccc---ccCcCCCCCCCeecccccccccccccceEecc-------------------------cCCCccccCc
Q 046626 397 MVSTKQKSLL---ESGIGCLSSLRFLMISDCENLEYFSLETLMLK-------------------------DCESLNLNLN 448 (557)
Q Consensus 397 ~l~~~~~~~~---~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~-------------------------~l~~l~l~~~ 448 (557)
++++|.+... |..+..+++|++|++++|. +..++..+..+. +++.|+++.+
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred eCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 5555554422 3344455555555555432 222222233334 4444444443
Q ss_pred cccccccccccccCCCCCcceEEEeCCCCC-CCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCc
Q 046626 449 IEMEGEESHCDRNKTRLHLRKLFVEGLPPL-LELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPA 527 (557)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 527 (557)
...... ......+++|++|+++++... ..+|..+ ..+++|+.|+|++|...+..|.+++.+++|++|++++|
T Consensus 432 ~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-- 504 (570)
T 2z63_A 432 HTRVAF---NGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-- 504 (570)
T ss_dssp CCEECC---TTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--
T ss_pred cccccc---hhhhhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC--
Confidence 211111 111234556666666665432 2356555 66677777777777666656666777777777777774
Q ss_pred cccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 528 LSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 528 l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
.+.+.....+.++++|+.+++++|
T Consensus 505 ------~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 505 ------QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp ------CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ------cCCCCCHHHhhcccCCcEEEecCC
Confidence 344445556788888888888877
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=2.2e-18 Score=176.82 Aligned_cols=244 Identities=16% Similarity=0.102 Sum_probs=170.7
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCe
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRY 347 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 347 (557)
..++.+.+.++.+... +.+..+++|+.|.+..+..... + +..+++|++|++++|.+..++ ++++++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~----~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITTL----D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC---TTGGGCTTCSEEECCSSCCSCC----C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC---hhhcccCCCCEEEccCCcCCeE----c--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 5677788877766654 2567788888888887665432 1 677888888888888888764 788888888
Q ss_pred eeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccc-ccccccCcCCCCCCCeeccccccc
Q 046626 348 LDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQ-KSLLESGIGCLSSLRFLMISDCEN 426 (557)
Q Consensus 348 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~c~~ 426 (557)
|++++|. +..+| ++.+++|++|++++|... .+| ++.+++|++|++++|. +..+ .++.+++|++|++++| .
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~ 181 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-K 181 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-C
T ss_pred EECCCCc-CCeec--CCCCCcCCEEECCCCccc-eec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-c
Confidence 8888885 66676 778888888888887643 343 7788888888888884 4344 4778888888888875 4
Q ss_pred ccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccccc
Q 046626 427 LEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMA 506 (557)
Q Consensus 427 l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~ 506 (557)
++.+| +..+.+++.|+++.|..... ....+++|++|+++++ .+..+| + ..+++|+.|++++|...+.
T Consensus 182 l~~l~--l~~l~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N-~l~~ip--~--~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 182 ITELD--VSQNKLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSN-KLTEID--V--TPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCCCC--CTTCTTCCEEECCSSCCSCC------CCTTCTTCSEEECCSS-CCSCCC--C--TTCTTCSEEECCSSCCSCC
T ss_pred cceec--cccCCCCCEEECcCCcCCee------ccccCCCCCEEECcCC-cccccC--c--cccCCCCEEEeeCCcCCCc
Confidence 55565 44556777777776653222 2356788889998885 455677 4 6788899999998876553
Q ss_pred CCccCCCCCCcceeee----------cCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 507 LPESLRNLEALETLAI----------GGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 507 lp~~l~~l~~L~~L~l----------~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
| ++.+++|+.|++ ++|+.+..+ .+..+++|+.+++++|
T Consensus 249 -~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~----------~~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 249 -D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF----------QAEGCRKIKELDVTHN 296 (457)
T ss_dssp -C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEE----------ECTTCTTCCCCCCTTC
T ss_pred -C--HHHCCCCCEEeccCCCCCEEECCCCccCCcc----------cccccccCCEEECCCC
Confidence 3 344555554444 443322222 1357899999999887
No 53
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=5.6e-19 Score=187.03 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=114.3
Q ss_pred EEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCccCeee
Q 046626 271 CHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKHLRYLD 349 (557)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~ 349 (557)
+.+.+.++.... ++..+ .++++.|.+..+... ...+..+.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 34 ~~l~ls~~~L~~--ip~~~--~~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYSNRNLTH--VPKDL--PPRTKALSLSQNSIS---ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECTTSCCCS--CCTTS--CTTCCEEECCSSCCC---CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcCCCCCcc--CCCCC--CCCcCEEECCCCCcc---ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 567777766655 33333 279999999977765 33445688999999999999999977 66799999999999
Q ss_pred ccCCcCccccchhhhcCCcCcEeecCCcCCCc-cccccccCCCCCcEEEcccccccccccCcCCCCCC--Ceeccccccc
Q 046626 350 LSDNDKIKKLPNSICELHSLQTLSLGGCRELE-ELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSL--RFLMISDCEN 426 (557)
Q Consensus 350 l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~c~~ 426 (557)
+++|. +..+|.. .+++|++|++++|.... .+|..++.+++|++|++++|.+.. ..++.+++| ++|++++|..
T Consensus 107 Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 107 VSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred CCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 99996 8899986 89999999999998554 346899999999999999998874 245555666 8888877643
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1.6e-18 Score=179.10 Aligned_cols=255 Identities=19% Similarity=0.210 Sum_probs=126.0
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccC
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLR 346 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 346 (557)
...++.+.+.++.+... +. +..+++|+.|.+..+...... + +.++++|++|++++|.+..++. +..+++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~---~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 137 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADIT---P--LANLTNLTGLTLFNNQITDIDP-LKNLTNLN 137 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCG---G--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred hcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccCh---h--hcCCCCCCEEECCCCCCCCChH-HcCCCCCC
Confidence 34566666666655443 12 566666666666655443211 1 5566667777777666666554 66666777
Q ss_pred eeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeeccccccc
Q 046626 347 YLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCEN 426 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 426 (557)
+|++++|. +..+|. ++.+++|++|++++ . ...++ .++.+++|++|++++|.+..++ .+..+++|++|++++|..
T Consensus 138 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~-~-~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 138 RLELSSNT-ISDISA-LSGLTSLQQLSFGN-Q-VTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI 211 (466)
T ss_dssp EEEEEEEE-ECCCGG-GTTCTTCSEEEEEE-S-CCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred EEECCCCc-cCCChh-hccCCcccEeecCC-c-ccCch-hhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcc
Confidence 77776664 444443 44444444444432 1 11222 2445555555555555554443 245555555555555432
Q ss_pred cccccc--------------------ceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhc
Q 046626 427 LEYFSL--------------------ETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLL 486 (557)
Q Consensus 427 l~~l~~--------------------~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~ 486 (557)
....+. .+..+.+++.|+++.+...... ....+++|++|+++++ .+..+|. +
T Consensus 212 ~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~~n-~l~~~~~-~- 283 (466)
T 1o6v_A 212 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-----PLSGLTKLTELKLGAN-QISNISP-L- 283 (466)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG-----GGTTCTTCSEEECCSS-CCCCCGG-G-
T ss_pred cccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccch-----hhhcCCCCCEEECCCC-ccCcccc-c-
Confidence 221110 1122233333333333211111 0234455555555553 2333333 3
Q ss_pred cCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 487 QGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 487 ~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
..+++|+.|++++|...+ ++. ++.+++|+.|++++|. ..+.. .+..+++|+.+++++|
T Consensus 284 -~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~--------l~~~~--~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 284 -AGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNN--------ISDIS--PVSSLTKLQRLFFYNN 341 (466)
T ss_dssp -TTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSC--------CSCCG--GGGGCTTCCEEECCSS
T ss_pred -cCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCc--------CCCch--hhccCccCCEeECCCC
Confidence 455566666666655332 332 5556666666666642 22211 2567777777777765
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=3.1e-19 Score=188.63 Aligned_cols=136 Identities=11% Similarity=0.133 Sum_probs=108.6
Q ss_pred CCCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhh--hccccCCC
Q 046626 265 SIPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEV--LSREIGNL 342 (557)
Q Consensus 265 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~l 342 (557)
.....++.+.+.++.+... .+..+..+++|++|.+..+... ...+..+.++++|++|++++|.+.. .|..++++
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 47 RACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLS---SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCC---SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccC---ccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 4456788999988877654 3456788999999999877654 4456668899999999999999984 46789999
Q ss_pred CccCeeeccCCcCccccc-hhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccc
Q 046626 343 KHLRYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS 404 (557)
Q Consensus 343 ~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 404 (557)
++|++|++++|..++.+| ..+..+++|++|++++|......|..++.+++|++|+++.|...
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 999999999997677776 57899999999999999877778888877666666666555444
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=3e-18 Score=177.01 Aligned_cols=147 Identities=19% Similarity=0.142 Sum_probs=69.5
Q ss_pred ccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCC
Q 046626 387 IRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLH 466 (557)
Q Consensus 387 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~ 466 (557)
+..+++|++|++++|.+..++. ++.+++|++|++++|. +..++. +..+.+++.|+++.+...... ....+++
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~ 310 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQLEDIS-----PISNLKN 310 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSCCSCCG-----GGGGCTT
T ss_pred hhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCcccCch-----hhcCCCC
Confidence 3444444444444444443322 4444444444444432 222221 223344444444444321111 1234556
Q ss_pred cceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCccccc
Q 046626 467 LRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHI 546 (557)
Q Consensus 467 L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l 546 (557)
|++|+++++. +..++. + ..+++|+.|++++|...+ ++ .+..+++|+.|++++|. ..+.. .+..+
T Consensus 311 L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~--------l~~~~--~~~~l 374 (466)
T 1o6v_A 311 LTYLTLYFNN-ISDISP-V--SSLTKLQRLFFYNNKVSD-VS-SLANLTNINWLSAGHNQ--------ISDLT--PLANL 374 (466)
T ss_dssp CSEEECCSSC-CSCCGG-G--GGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC--------CCBCG--GGTTC
T ss_pred CCEEECcCCc-CCCchh-h--ccCccCCEeECCCCccCC-ch-hhccCCCCCEEeCCCCc--------cCccc--hhhcC
Confidence 6666666542 333333 2 455666666666665332 32 35666666666666642 22222 26677
Q ss_pred CceeeCCCCCC
Q 046626 547 PQVRIDDESDN 557 (557)
Q Consensus 547 ~~l~~l~~~~n 557 (557)
++|+.+++++|
T Consensus 375 ~~L~~L~l~~n 385 (466)
T 1o6v_A 375 TRITQLGLNDQ 385 (466)
T ss_dssp TTCCEEECCCE
T ss_pred CCCCEEeccCC
Confidence 77777777665
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=5.6e-20 Score=179.39 Aligned_cols=199 Identities=18% Similarity=0.147 Sum_probs=104.2
Q ss_pred cCCCcceEeeCCCChh-hhcccc--CCCCccCeeeccCCcCccccchhhhcC-----CcCcEeecCCcCCCccccccccC
Q 046626 318 KSQFLRVIDLSETAIE-VLSREI--GNLKHLRYLDLSDNDKIKKLPNSICEL-----HSLQTLSLGGCRELEELPKDIRY 389 (557)
Q Consensus 318 ~~~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~~~~~p~~~~~ 389 (557)
++++|++|++++|.+. .+|..+ ..+++|++|++++|. +..+|..++.+ ++|++|++++|......|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4556666666666665 445544 556666666666654 44445555554 56666666665544444455666
Q ss_pred CCCCcEEEcccccccc---cccCc--CCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCC
Q 046626 390 LVSLRMFMVSTKQKSL---LESGI--GCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTR 464 (557)
Q Consensus 390 l~~L~~L~l~~~~~~~---~~~~~--~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~ 464 (557)
+++|++|++++|.+.. .|..+ +.+++|++|++++|. +..++. ........+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------------------~~~~~~~~l 227 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSG-----------------------VCSALAAAR 227 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHH-----------------------HHHHHHHTT
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHH-----------------------HHHHHHhcC
Confidence 6666666666665431 12223 556666666666542 221110 000001234
Q ss_pred CCcceEEEeCCCCCCCCC--hhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCc
Q 046626 465 LHLRKLFVEGLPPLLELP--QWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPK 542 (557)
Q Consensus 465 ~~L~~L~l~~~~~l~~lp--~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 542 (557)
++|++|+++++. +...+ ..+ ..+++|++|+|++|... .+|..+. ++|++|++++| .+.+. +.
T Consensus 228 ~~L~~L~Ls~N~-l~~~~~~~~~--~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N--------~l~~~--p~ 291 (312)
T 1wwl_A 228 VQLQGLDLSHNS-LRDAAGAPSC--DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN--------RLDRN--PS 291 (312)
T ss_dssp CCCSEEECTTSC-CCSSCCCSCC--CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS--------CCCSC--CC
T ss_pred CCCCEEECCCCc-CCcccchhhh--hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC--------CCCCC--hh
Confidence 566666666543 22222 122 34566667777666643 5666554 66667776663 33333 22
Q ss_pred ccccCceeeCCCCCC
Q 046626 543 IAHIPQVRIDDESDN 557 (557)
Q Consensus 543 ~~~l~~l~~l~~~~n 557 (557)
+..+++|+.+++++|
T Consensus 292 ~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 292 PDELPQVGNLSLKGN 306 (312)
T ss_dssp TTTSCEEEEEECTTC
T ss_pred HhhCCCCCEEeccCC
Confidence 566666666666665
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.7e-18 Score=166.72 Aligned_cols=204 Identities=20% Similarity=0.223 Sum_probs=160.6
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCccCeeeccCCcCcccc-chhhhcCCcC
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKHLRYLDLSDNDKIKKL-PNSICELHSL 369 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L 369 (557)
.+.++.|.+..+... ...+..+.++++|++|++++|.+..+ |..+..+++|++|++++|..+..+ |..+..+++|
T Consensus 31 ~~~l~~L~l~~n~i~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS---HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCcCC---ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 468899999876654 23345578899999999999999876 677899999999999998646666 6778899999
Q ss_pred cEeecCCcCCCccccccccCCCCCcEEEccccccccccc-CcCCCCCCCeecccccccccccccc-eEecccCCCccccC
Q 046626 370 QTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLES-GIGCLSSLRFLMISDCENLEYFSLE-TLMLKDCESLNLNL 447 (557)
Q Consensus 370 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~l~~l~l~~ 447 (557)
++|++++|......|..+..+++|++|++++|.+..++. .++.+++|++|++++| .+..++.. +..+.+++.|+++.
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCC
Confidence 999999988666667788999999999999999986654 4889999999999985 55666543 66678888888888
Q ss_pred ccccccccccccccCCCCCcceEEEeCCCCCCCCChh-hccCCCcccceEecccccccc
Q 046626 448 NIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQW-LLQGSTKTLKNLIIRNCPNFM 505 (557)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-~~~~~l~~L~~L~L~~c~~~~ 505 (557)
|...... ......+++|++|+++++ .+..+|.. + ..+++|+.|+|++|+...
T Consensus 187 n~l~~~~---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 187 NRVAHVH---PHAFRDLGRLMTLYLFAN-NLSALPTEAL--APLRALQYLRLNDNPWVC 239 (285)
T ss_dssp SCCCEEC---TTTTTTCTTCCEEECCSS-CCSCCCHHHH--TTCTTCCEEECCSSCEEC
T ss_pred CcccccC---HhHccCcccccEeeCCCC-cCCcCCHHHc--ccCcccCEEeccCCCccC
Confidence 7543221 122356789999999986 55566654 5 788999999999998653
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=8.5e-19 Score=188.64 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=108.2
Q ss_pred CCCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhcc-ccCCCC
Q 046626 265 SIPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSR-EIGNLK 343 (557)
Q Consensus 265 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~ 343 (557)
..|..++.+.+.++.+... .+..+.++++|++|.+..+... ...+..|.++++|++|+|++|.++.+|+ .+.+++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~---~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp SSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCC---EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCC---CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 3567889999988887764 3356788999999999877654 3445568889999999999999998875 478999
Q ss_pred ccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCc-cccccccCCCCCcEEEccccccc
Q 046626 344 HLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELE-ELPKDIRYLVSLRMFMVSTKQKS 404 (557)
Q Consensus 344 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~ 404 (557)
+|++|++++|. +..+|. .|+.+++|++|++++|.... ..|..++.+++|++|++++|.+.
T Consensus 125 ~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 125 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999999985 666664 58899999999999987543 56788889999999999888765
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=1.4e-18 Score=188.54 Aligned_cols=133 Identities=18% Similarity=0.147 Sum_probs=81.2
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhc-cccCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLS-REIGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~ 346 (557)
..++.+.+.++.+... .+..+.++++|++|.+..+... ...+..|.++++|++|++++|.+..++ ..++++++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS---QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp TTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred CcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccC---ccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 4566666666655443 3445666777777777655443 222334666777777777777776655 4567777777
Q ss_pred eeeccCCcCccccchhhhcCCcCcEeecCCcCCCcccccccc--CCCCCcEEEccccccc
Q 046626 347 YLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIR--YLVSLRMFMVSTKQKS 404 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~--~l~~L~~L~l~~~~~~ 404 (557)
+|++++|......|..++.+++|++|++++|......|..+. .+++|++|++++|.+.
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 777777754444455566777777777777654333333332 3466777777766655
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=8e-18 Score=161.15 Aligned_cols=203 Identities=18% Similarity=0.118 Sum_probs=132.9
Q ss_pred CCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccchhhhcCCcCcE
Q 046626 293 RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQT 371 (557)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 371 (557)
+.+++|.+..+.... ..+..+.++++|++|++++|.+..++. .+..+++|++|++++|......|..+..+++|++
T Consensus 28 ~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 467888887665442 223356777888888888888876654 5777888888888887533333456778888888
Q ss_pred eecCCcCCCccccccccCCCCCcEEEcccccccc--cccCcCCCCCCCeecccccccccccc-cceEecccCCCccccCc
Q 046626 372 LSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSL--LESGIGCLSSLRFLMISDCENLEYFS-LETLMLKDCESLNLNLN 448 (557)
Q Consensus 372 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~l~~l~l~~~ 448 (557)
|++++|......+..++.+++|++|++++|.+.. +|..++.+++|++|++++|. +..++ ..+..+.+++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~------- 176 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMP------- 176 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCT-------
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhcc-------
Confidence 8888877554444467788888888888888774 56778888888888888753 33332 2222223322
Q ss_pred cccccccccccccCCCCCcc-eEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 449 IEMEGEESHCDRNKTRLHLR-KLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
.|. +|++++. .+..+|... ....+|+.|+|++|...+..+..+..+++|+.|++++|+
T Consensus 177 -----------------~l~l~L~ls~n-~l~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 177 -----------------LLNLSLDLSLN-PMNFIQPGA--FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp -----------------TCCEEEECCSS-CCCEECTTS--SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred -----------------ccceeeecCCC-cccccCccc--cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 222 4555553 344555554 334578888888887554444456778888888888643
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.2e-17 Score=160.67 Aligned_cols=199 Identities=21% Similarity=0.246 Sum_probs=133.8
Q ss_pred ccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhh-ccccCCCCccCeeeccCCcCccccchhhhcCC
Q 046626 289 LSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVL-SREIGNLKHLRYLDLSDNDKIKKLPNSICELH 367 (557)
Q Consensus 289 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 367 (557)
+.++++++.+.+..+.... +|..+ .+.+++|++++|.+..+ +..+..+++|++|++++|. +..+|.. +.++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~----ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA----LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSS----CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCT
T ss_pred ccccCCccEEECCCCCCCc----CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCC
Confidence 4456667777766544331 11111 24677777777777755 3457777777777777774 6666653 6777
Q ss_pred cCcEeecCCcCCCccccccccCCCCCcEEEcccccccccc-cCcCCCCCCCeecccccccccccccceEecccCCCcccc
Q 046626 368 SLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLE-SGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLN 446 (557)
Q Consensus 368 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~ 446 (557)
+|++|++++|. +..+|..+..+++|++|++++|.+..+| ..++.+++|++|++++| .+..++..
T Consensus 78 ~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~------------- 142 (290)
T 1p9a_G 78 VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPG------------- 142 (290)
T ss_dssp TCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT-------------
T ss_pred cCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChh-------------
Confidence 77777777765 4567777777777777777777777554 45777777777777764 33333321
Q ss_pred CccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 447 LNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
....+++|+.|+++++ .+..+|...+ ..+++|+.|+|++|. ++.+|..+..+++|+.|++++||
T Consensus 143 -------------~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 143 -------------LLTPTPKLEKLSLANN-NLTELPAGLL-NGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -------------TTTTCTTCCEEECTTS-CCSCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred -------------hcccccCCCEEECCCC-cCCccCHHHh-cCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 1135567888888774 5667776543 568899999999887 45788888888899999998876
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3.7e-18 Score=176.68 Aligned_cols=213 Identities=18% Similarity=0.157 Sum_probs=116.3
Q ss_pred CCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEee
Q 046626 294 RARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLS 373 (557)
Q Consensus 294 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 373 (557)
+|+.|.+.++... ...+..+.++++|++|++++|.+...++ ++.+++|++|+|++|. +..+|. .++|++|+
T Consensus 35 ~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCC---CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEE
T ss_pred CccEEEeeCCcCC---CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEE
Confidence 5666666554433 1233345556666666666666654443 5566666666666653 444442 25566666
Q ss_pred cCCcCCCccccccccCCCCCcEEEccccccccc-ccCcCCCCCCCeecccccccccccccceE-ecccCCCccccCcccc
Q 046626 374 LGGCRELEELPKDIRYLVSLRMFMVSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYFSLETL-MLKDCESLNLNLNIEM 451 (557)
Q Consensus 374 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~l~~l~~l~l~~~~~~ 451 (557)
+++|.... +|.. .+++|+.|++++|.+..+ |..++.+++|++|++++|......|..+. .+.+++.|+++.|...
T Consensus 106 L~~N~l~~-~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISR-VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCC-EEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCC-CCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 66655332 2221 245566666666665533 44555566666666665433332333332 4555555555555422
Q ss_pred ccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCc
Q 046626 452 EGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPA 527 (557)
Q Consensus 452 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 527 (557)
.. .....+++|++|+++++ .+..+|..+ ..+++|+.|+|++|... .+|..++.+++|+.|++++|+-
T Consensus 183 ~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 183 DV-----KGQVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EE-----ECCCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred cc-----cccccCCCCCEEECCCC-CCCCCCHhH--cCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence 11 11123566777777664 445566665 56677777777777643 4666677777777777777653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=4.3e-18 Score=166.38 Aligned_cols=213 Identities=18% Similarity=0.180 Sum_probs=91.8
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcE
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQT 371 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 371 (557)
+++|+.|.+..+... ...+..+.++++|++|++++|.+...++ +..+++|++|++++|. +..+|. .++|++
T Consensus 33 ~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~~ 103 (317)
T 3o53_A 33 AWNVKELDLSGNPLS---QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIET 103 (317)
T ss_dssp GGGCSEEECTTSCCC---CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----CTTCCE
T ss_pred CCCCCEEECcCCccC---cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccC----CCCcCE
Confidence 344555555443332 1223344445555555555555543332 4455555555555443 333331 244555
Q ss_pred eecCCcCCCccccccccCCCCCcEEEccccccccc-ccCcCCCCCCCeeccccccccccc-ccce-EecccCCCccccCc
Q 046626 372 LSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLL-ESGIGCLSSLRFLMISDCENLEYF-SLET-LMLKDCESLNLNLN 448 (557)
Q Consensus 372 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l-~~~~-~~l~~l~~l~l~~~ 448 (557)
|++++|... .++.. .+++|++|++++|.+..+ +..++.+++|++|++++|. +..+ +..+ ..+.+++.|+++.|
T Consensus 104 L~l~~n~l~-~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EECCSSCCS-EEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECCCCccC-CcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC
Confidence 555544422 22211 134455555555544432 2234444555555554432 2222 1111 12344444444444
Q ss_pred cccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 449 IEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
.....+ ....+++|++|+++++ .+..+|..+ ..+++|+.|+|++|... .+|..+..+++|+.|++++|+
T Consensus 180 ~l~~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 180 FIYDVK-----GQVVFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCCEEE-----CCCCCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred cCcccc-----cccccccCCEEECCCC-cCCcchhhh--cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence 321110 0112445555555553 333444444 44555555555555432 345555555555555555543
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=4.8e-18 Score=158.97 Aligned_cols=197 Identities=16% Similarity=0.167 Sum_probs=101.7
Q ss_pred CcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCcccc-ccccCCCCCcEEE
Q 046626 321 FLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELP-KDIRYLVSLRMFM 397 (557)
Q Consensus 321 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~ 397 (557)
.|++|++++|.++.+|+ .+..+++|++|++++|..++.+|. .+..+++|++|++++|..+..+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 46666666666665554 466666666666666643555543 45666666666666622344444 3456666666666
Q ss_pred cccccccccccCcCCCCCCC---eecccccccccccccc-eEecccCC-CccccCccccccccccccccCCCCCcceEEE
Q 046626 398 VSTKQKSLLESGIGCLSSLR---FLMISDCENLEYFSLE-TLMLKDCE-SLNLNLNIEMEGEESHCDRNKTRLHLRKLFV 472 (557)
Q Consensus 398 l~~~~~~~~~~~~~~l~~L~---~L~l~~c~~l~~l~~~-~~~l~~l~-~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 472 (557)
+++|.+..+|. ++.+++|+ +|++++|+.++.++.. +..+.+++ .++++.|.....+... ...++|++|++
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~----~~~~~L~~L~L 186 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA----FNGTKLDAVYL 186 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT----TTTCEEEEEEC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh----cCCCCCCEEEc
Confidence 66666666554 66666666 6666665445544422 22233333 3333332211100000 11145555666
Q ss_pred eCCCCCCCCChhhccCCC-cccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 473 EGLPPLLELPQWLLQGST-KTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 473 ~~~~~l~~lp~~~~~~~l-~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
+++..+..+|...+ ..+ ++|+.|++++|.. +.+|.. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N~l-~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAF-GGVYSGPSLLDVSQTSV-TALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTT-TTCSBCCSEEECTTCCC-CCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHh-hccccCCcEEECCCCcc-ccCChh--HhccCceeeccCcc
Confidence 55444445543322 444 5666666666553 344442 45566666665553
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=2.9e-17 Score=156.61 Aligned_cols=177 Identities=22% Similarity=0.238 Sum_probs=115.6
Q ss_pred CCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccchh-hhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 320 QFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLPNS-ICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
+.++.|++++|.+..++. .+..+++|++|++++|. +..+|.. +..+++|++|++++|......+..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 457777777777776654 56677777777777764 5555544 35677777777777664333333456677777777
Q ss_pred cccccccccc-cCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCC
Q 046626 398 VSTKQKSLLE-SGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLP 476 (557)
Q Consensus 398 l~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 476 (557)
+++|.+..++ ..++.+++|++|++++| .+..++.. ....+++|++|+++++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~--------------------------~~~~l~~L~~L~L~~n- 167 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKG--------------------------VFDKLTSLKELRLYNN- 167 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------------------------TTTTCTTCCEEECCSS-
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHh--------------------------HccCCcccceeEecCC-
Confidence 7777766443 34567777777777764 23322210 1145678888888875
Q ss_pred CCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 477 PLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 477 ~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
.+..+|...+ ..+++|+.|+|++|......+..+..+++|+.|++++||
T Consensus 168 ~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 168 QLKRVPEGAF-DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcEeChhHh-ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 4556665422 678899999999987665445568888999999999865
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=7.1e-18 Score=164.84 Aligned_cols=224 Identities=15% Similarity=0.096 Sum_probs=172.7
Q ss_pred hHHHHHHhhcCCCcceEeeCCCChhhhc-cccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccc
Q 046626 309 QSILTSCISKSQFLRVIDLSETAIEVLS-REIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDI 387 (557)
Q Consensus 309 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~ 387 (557)
...+...+..+++|++|++++|.+..++ ..+..+++|++|++++|. +..++. +..+++|++|++++|. +..+|
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~--- 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELL--- 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEE---
T ss_pred hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-ccccc---
Confidence 4555666777889999999999999765 679999999999999996 655555 8999999999999987 44444
Q ss_pred cCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCc
Q 046626 388 RYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHL 467 (557)
Q Consensus 388 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L 467 (557)
..++|++|++++|.+..++.. .+++|++|++++|......+..+..+.+++.|+++.|.......... ...+++|
T Consensus 97 -~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~~l~~L 171 (317)
T 3o53_A 97 -VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--AASSDTL 171 (317)
T ss_dssp -ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG--GGGTTTC
T ss_pred -CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH--hhccCcC
Confidence 448999999999999866543 47899999999865444335566678889999998876433221111 1356899
Q ss_pred ceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccC
Q 046626 468 RKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIP 547 (557)
Q Consensus 468 ~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~ 547 (557)
++|+++++ .+..+|.. ..+++|+.|+|++|... .+|..+..+++|+.|++++|. ++. .+..+..++
T Consensus 172 ~~L~L~~N-~l~~~~~~---~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~-l~~--------l~~~~~~l~ 237 (317)
T 3o53_A 172 EHLNLQYN-FIYDVKGQ---VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVL--------IEKALRFSQ 237 (317)
T ss_dssp CEEECTTS-CCCEEECC---CCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC-CCE--------ECTTCCCCT
T ss_pred CEEECCCC-cCcccccc---cccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCc-ccc--------hhhHhhcCC
Confidence 99999986 45566554 35899999999999855 566679999999999999963 222 233567889
Q ss_pred ceeeCCCCCC
Q 046626 548 QVRIDDESDN 557 (557)
Q Consensus 548 ~l~~l~~~~n 557 (557)
+|+.+++++|
T Consensus 238 ~L~~L~l~~N 247 (317)
T 3o53_A 238 NLEHFDLRGN 247 (317)
T ss_dssp TCCEEECTTC
T ss_pred CCCEEEccCC
Confidence 9999999987
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.1e-16 Score=169.05 Aligned_cols=235 Identities=21% Similarity=0.127 Sum_probs=153.8
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccC
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLR 346 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 346 (557)
+..++.+.+.++.+... +. .+++|++|.+..+.... +|. .+++|++|++++|.++.+|. .+++|+
T Consensus 60 ~~~L~~L~L~~N~l~~l--p~---~l~~L~~L~Ls~N~l~~----lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~ 124 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSL--PA---LPPELRTLEVSGNQLTS----LPV---LPPGLLELSIFSNPLTHLPA---LPSGLC 124 (622)
T ss_dssp CTTCSEEEECSCCCSCC--CC---CCTTCCEEEECSCCCSC----CCC---CCTTCCEEEECSCCCCCCCC---CCTTCC
T ss_pred CCCCcEEEecCCCCCCC--CC---cCCCCCEEEcCCCcCCc----CCC---CCCCCCEEECcCCcCCCCCC---CCCCcC
Confidence 45778888877766543 22 57788888888766542 111 56788888888888887776 567788
Q ss_pred eeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeeccccccc
Q 046626 347 YLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCEN 426 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 426 (557)
+|++++|. +..+|.. +++|++|++++|. +..+|.. +.+|+.|++++|.+..+| ..+++|+.|++++| .
T Consensus 125 ~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N-~ 192 (622)
T 3g06_A 125 KLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQLTSLP---MLPSGLQELSVSDN-Q 192 (622)
T ss_dssp EEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-C
T ss_pred EEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCCCCCCc---ccCCCCcEEECCCC-C
Confidence 88888875 7777763 4788888888875 4456643 456777777777777766 44677888888774 4
Q ss_pred ccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccccc
Q 046626 427 LEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMA 506 (557)
Q Consensus 427 l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~ 506 (557)
+..+|.. +.+++.|.++.|.....+ ..+++|++|+++++ .+..+| ..+++|+.|+|++|.+ +.
T Consensus 193 l~~l~~~---~~~L~~L~L~~N~l~~l~-------~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N~L-~~ 255 (622)
T 3g06_A 193 LASLPTL---PSELYKLWAYNNRLTSLP-------ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGNRL-TS 255 (622)
T ss_dssp CSCCCCC---CTTCCEEECCSSCCSSCC-------CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSCC-SC
T ss_pred CCCCCCc---cchhhEEECcCCcccccC-------CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCCCC-Cc
Confidence 4555432 355666666555322111 12367777777764 455566 2356777777777753 45
Q ss_pred CCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 507 LPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 507 lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
+|. .+++|+.|++++| .+. ..+..+.++++|+.+++++|
T Consensus 256 lp~---~~~~L~~L~Ls~N--------~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRN--------QLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCC---CCTTCCEEECCSS--------CCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CCc---ccccCcEEeCCCC--------CCC-cCCHHHhhccccCEEEecCC
Confidence 665 5677777777775 222 22345677777777777776
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=6.1e-18 Score=175.05 Aligned_cols=235 Identities=12% Similarity=0.072 Sum_probs=190.5
Q ss_pred CCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccC
Q 046626 267 PKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLR 346 (557)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~ 346 (557)
+..++.+.+.++.+... .+..+..+++|++|.+..+...... + +..+++|++|++++|.+..+|.. ++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~---~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETL---D--LESLSTLRTLDLNNNYVQELLVG----PSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEE---E--CTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred CCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCc---c--cccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence 45789999999887765 4467889999999999987765322 2 78899999999999999877643 8999
Q ss_pred eeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccc-cccCcC-CCCCCCeeccccc
Q 046626 347 YLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSL-LESGIG-CLSSLRFLMISDC 424 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~~~~~-~l~~L~~L~l~~c 424 (557)
+|++++|. +..+|. ..+++|++|++++|......|..++.+++|++|++++|.+.. .|..+. .+++|++|++++|
T Consensus 103 ~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNN-ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSC-CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCc-CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 99999996 666654 357899999999998777778889999999999999999984 566665 7999999999986
Q ss_pred ccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccc
Q 046626 425 ENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNF 504 (557)
Q Consensus 425 ~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~ 504 (557)
. +..++.. ..+.+++.|+++.|.....+.. ...+++|+.|+++++ .+..+|.++ ..+++|+.|++++|+..
T Consensus 180 ~-l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~----~~~l~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 180 F-IYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE----FQSAAGVTWISLRNN-KLVLIEKAL--RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp C-CCEEECC-CCCTTCCEEECCSSCCCEECGG----GGGGTTCSEEECTTS-CCCEECTTC--CCCTTCCEEECTTCCBC
T ss_pred c-ccccccc-ccCCCCCEEECCCCCCCCCCHh----HcCCCCccEEEecCC-cCcccchhh--ccCCCCCEEEcCCCCCc
Confidence 5 5555432 2478899999988865433222 357789999999995 566899988 88999999999999976
Q ss_pred -ccCCccCCCCCCcceeeec
Q 046626 505 -MALPESLRNLEALETLAIG 523 (557)
Q Consensus 505 -~~lp~~l~~l~~L~~L~l~ 523 (557)
+.+|.++..+++|+.+.+.
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 5778889999999999886
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.5e-17 Score=162.25 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=153.9
Q ss_pred CCCCCcEEEecCCCccchhHHHHHHh--hcCCCcceEeeCCCChhhhccccCCC-----CccCeeeccCCcCccccc-hh
Q 046626 291 DLRRARTILFPINDEKTNQSILTSCI--SKSQFLRVIDLSETAIEVLSREIGNL-----KHLRYLDLSDNDKIKKLP-NS 362 (557)
Q Consensus 291 ~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~lp-~~ 362 (557)
++++|+.|.+..+.... ..|..+ ..+++|++|++++|.+...|..++.+ ++|++|++++|. +..+| ..
T Consensus 93 ~l~~L~~L~L~~n~l~~---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG---TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBS---CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTT
T ss_pred CcCCccEEEccCCcccc---hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHH
Confidence 68999999998766541 222222 78999999999999999878777776 899999999997 55554 78
Q ss_pred hhcCCcCcEeecCCcCCCcc--ccccc--cCCCCCcEEEcccccccccc----cCcCCCCCCCeecccccccccccccce
Q 046626 363 ICELHSLQTLSLGGCRELEE--LPKDI--RYLVSLRMFMVSTKQKSLLE----SGIGCLSSLRFLMISDCENLEYFSLET 434 (557)
Q Consensus 363 ~~~l~~L~~L~l~~~~~~~~--~p~~~--~~l~~L~~L~l~~~~~~~~~----~~~~~l~~L~~L~l~~c~~l~~l~~~~ 434 (557)
++.+++|++|++++|..... +|..+ +.+++|++|++++|.+..++ ..+..+++|++|++++|......|..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 247 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP- 247 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-
Confidence 99999999999999986554 45555 89999999999999988433 23457899999999986432211110
Q ss_pred EecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCC
Q 046626 435 LMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNL 514 (557)
Q Consensus 435 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l 514 (557)
....+++|++|+++++ .+..+|.++ . ++|++|+|++|... .+|. +..+
T Consensus 248 -------------------------~~~~l~~L~~L~Ls~N-~l~~ip~~~--~--~~L~~L~Ls~N~l~-~~p~-~~~l 295 (312)
T 1wwl_A 248 -------------------------SCDWPSQLNSLNLSFT-GLKQVPKGL--P--AKLSVLDLSYNRLD-RNPS-PDEL 295 (312)
T ss_dssp -------------------------CCCCCTTCCEEECTTS-CCSSCCSSC--C--SEEEEEECCSSCCC-SCCC-TTTS
T ss_pred -------------------------hhhhcCCCCEEECCCC-ccChhhhhc--c--CCceEEECCCCCCC-CChh-HhhC
Confidence 0123568888888885 456888877 4 89999999999855 4577 9999
Q ss_pred CCcceeeecCCC
Q 046626 515 EALETLAIGGCP 526 (557)
Q Consensus 515 ~~L~~L~l~~c~ 526 (557)
++|++|++++|+
T Consensus 296 ~~L~~L~L~~N~ 307 (312)
T 1wwl_A 296 PQVGNLSLKGNP 307 (312)
T ss_dssp CEEEEEECTTCT
T ss_pred CCCCEEeccCCC
Confidence 999999999963
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=3.6e-17 Score=158.96 Aligned_cols=192 Identities=19% Similarity=0.254 Sum_probs=130.9
Q ss_pred ccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCc
Q 046626 289 LSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHS 368 (557)
Q Consensus 289 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 368 (557)
..++++++.|.+..+..... + .+..+++|++|++++|.+..++. +..+++|++|++++|. +..+| .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l----~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI----E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccCc----h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCC
Confidence 34577888888876655431 2 36778889999999888888777 8888889999999885 77776 4888889
Q ss_pred CcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCc
Q 046626 369 LQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLN 448 (557)
Q Consensus 369 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~ 448 (557)
|++|++++|. +..+|. +..+++|++|++++|.+..++. ++.+++|++|++++| .+..++. +
T Consensus 109 L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l-------------- 169 (308)
T 1h6u_A 109 IKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-L-------------- 169 (308)
T ss_dssp CCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-G--------------
T ss_pred CCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-h--------------
Confidence 9999998887 445554 8888889999999888887654 788888888888875 3443332 2
Q ss_pred cccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 449 IEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
..+++|++|+++++ .+..+|. + ..+++|+.|+|++|... .++. +..+++|+.|++++|+
T Consensus 170 -------------~~l~~L~~L~l~~n-~l~~~~~-l--~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 170 -------------ANLSKLTTLKADDN-KISDISP-L--ASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp -------------TTCTTCCEEECCSS-CCCCCGG-G--GGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEEEE
T ss_pred -------------cCCCCCCEEECCCC-ccCcChh-h--cCCCCCCEEEccCCccC-cccc-ccCCCCCCEEEccCCe
Confidence 23445555555553 2334443 2 45556666666666533 2332 5556666666666543
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=156.10 Aligned_cols=223 Identities=15% Similarity=0.055 Sum_probs=141.3
Q ss_pred CCcEEEecCCCccchh-HHHHHHhhcCCCcceEeeCCCChh-hhcccc--CCCCccCeeeccCCcCccccc----hhhhc
Q 046626 294 RARTILFPINDEKTNQ-SILTSCISKSQFLRVIDLSETAIE-VLSREI--GNLKHLRYLDLSDNDKIKKLP----NSICE 365 (557)
Q Consensus 294 ~l~~l~~~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~lp----~~~~~ 365 (557)
.++.+.+......... ..... +..+++|++|++++|.+. ..|..+ ..+++|++|++++|......| ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4566666544433111 11222 223467999999999988 556666 889999999999997444444 34567
Q ss_pred CCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccc---cc--cCcCCCCCCCeecccccccccccccc----eEe
Q 046626 366 LHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSL---LE--SGIGCLSSLRFLMISDCENLEYFSLE----TLM 436 (557)
Q Consensus 366 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~~--~~~~~l~~L~~L~l~~c~~l~~l~~~----~~~ 436 (557)
+++|++|++++|......|..++.+++|++|++++|.+.. ++ ..++.+++|++|++++| .++.++.. +..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhc
Confidence 9999999999998776777889999999999999998652 32 33478999999999986 44444332 234
Q ss_pred cccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCC
Q 046626 437 LKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEA 516 (557)
Q Consensus 437 l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~ 516 (557)
+.+++.|+++.|...............+++|++|+++++ .+..+|..+ .++|+.|+|++|... .+|. +..+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~----~~~L~~L~Ls~N~l~-~~~~-~~~l~~ 295 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL----PAKLRVLDLSSNRLN-RAPQ-PDELPE 295 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC----CSCCSCEECCSCCCC-SCCC-TTSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh----cCCCCEEECCCCcCC-CCch-hhhCCC
Confidence 566677776666532221111111122356666666553 344555544 256666666666533 3333 455666
Q ss_pred cceeeecCC
Q 046626 517 LETLAIGGC 525 (557)
Q Consensus 517 L~~L~l~~c 525 (557)
|+.|++++|
T Consensus 296 L~~L~L~~N 304 (310)
T 4glp_A 296 VDNLTLDGN 304 (310)
T ss_dssp CSCEECSST
T ss_pred ccEEECcCC
Confidence 666666664
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=2e-18 Score=170.43 Aligned_cols=219 Identities=19% Similarity=0.179 Sum_probs=140.2
Q ss_pred ceEEEEeecCCCCcccccccccCC--CCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhh--hccccCCCCc
Q 046626 269 RVCHLSFVGANTSRNDFSSLLSDL--RRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEV--LSREIGNLKH 344 (557)
Q Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~l~~ 344 (557)
..+.+.+..+.... ..+..+ +.++.+.+..+...... +. +.++++|++|++++|.+.. +|..+..+++
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~---~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPL---AE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCC---CS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccc---hh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 35566665554432 334444 77788877655433211 11 4467888888888887762 6777888888
Q ss_pred cCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCc--cccccccCCCCCcEEEcccc-cccc--cccCcCCCC-CCCe
Q 046626 345 LRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELE--ELPKDIRYLVSLRMFMVSTK-QKSL--LESGIGCLS-SLRF 418 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~-~~~~--~~~~~~~l~-~L~~ 418 (557)
|++|++++|......|..++.+++|++|++++|..+. .+|..+..+++|++|++++| .+.. ++..++.++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 8888888886444677778888888888888884444 36666778888888888888 6663 566677788 8888
Q ss_pred ecccccc-cc--cccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCCh---hhccCCCcc
Q 046626 419 LMISDCE-NL--EYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQ---WLLQGSTKT 492 (557)
Q Consensus 419 L~l~~c~-~l--~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~---~~~~~~l~~ 492 (557)
|++++|. .+ ..++.....+.+++.|+++.+....... ......+++|++|++++|..+. +. .+ ..+++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l--~~~~~ 273 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCYDII--PETLLEL--GEIPT 273 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCTTCC--GGGGGGG--GGCTT
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCCCCC--HHHHHHH--hcCCC
Confidence 8888874 23 2334344455666667666654221111 1122455777777777765321 22 23 45777
Q ss_pred cceEecccc
Q 046626 493 LKNLIIRNC 501 (557)
Q Consensus 493 L~~L~L~~c 501 (557)
|+.|++++|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 777777777
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=3e-16 Score=168.70 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=89.1
Q ss_pred CCCCCCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhcc-ccC
Q 046626 262 DCQSIPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSR-EIG 340 (557)
Q Consensus 262 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~ 340 (557)
........++.+.+.++.+... .+..+.++++|++|.+..+... ...+..|.++++|++|++++|.++.+|+ .++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~---~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~ 145 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSSLQKLVAVETNLASLENFPIG 145 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCC---EECGGGGTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred HHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCC---CCCHHHhcCCCCCCEEECCCCcCCCCChhhhh
Confidence 3344456788999988877664 2345788999999999877654 3344568899999999999999998876 489
Q ss_pred CCCccCeeeccCCcCcc--ccchhhhcCCcCcEeecCCcCC
Q 046626 341 NLKHLRYLDLSDNDKIK--KLPNSICELHSLQTLSLGGCRE 379 (557)
Q Consensus 341 ~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~l~~~~~ 379 (557)
++++|++|++++|. +. .+|..++.+++|++|++++|..
T Consensus 146 ~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 146 HLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccc
Confidence 99999999999986 44 4678888999999999998764
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=9.3e-17 Score=153.68 Aligned_cols=197 Identities=18% Similarity=0.111 Sum_probs=146.6
Q ss_pred CCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccc-hhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 320 QFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
+.|++|++++|.+..++. .+.++++|++|++++|. +..+| ..+..+++|++|++++|......|..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 468999999999987765 78889999999999885 55554 4688899999999999886666667788999999999
Q ss_pred ccccccccccc-CcCCCCCCCeecccccccccc--cccceEecccCCCccccCccccccccccccccCCCCCcceEEEeC
Q 046626 398 VSTKQKSLLES-GIGCLSSLRFLMISDCENLEY--FSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEG 474 (557)
Q Consensus 398 l~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~--l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 474 (557)
+++|.+..++. .++.+++|++|++++|. +.. +|.. ...+++|++|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~---------------------------~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY---------------------------FSNLTNLEHLDLSS 158 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG---------------------------GGGCTTCCEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh---------------------------hccCCCCCEEECCC
Confidence 99998886544 68889999999998753 332 1211 13456788888877
Q ss_pred CCCCCCCC-hhhccCCCcccc----eEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCce
Q 046626 475 LPPLLELP-QWLLQGSTKTLK----NLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQV 549 (557)
Q Consensus 475 ~~~l~~lp-~~~~~~~l~~L~----~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l 549 (557)
+ .+..+| ..+ ..+++|+ .|++++|.... +|.......+|++|++++| .+.+.....+..+++|
T Consensus 159 N-~l~~~~~~~~--~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n--------~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 159 N-KIQSIYCTDL--RVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTN--------QLKSVPDGIFDRLTSL 226 (276)
T ss_dssp S-CCCEECGGGG--HHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSS--------CCSCCCTTTTTTCCSC
T ss_pred C-CCCcCCHHHh--hhhhhccccceeeecCCCcccc-cCccccCCCcccEEECCCC--------ceeecCHhHhcccccc
Confidence 5 344444 334 4556666 89999998665 4444445569999999995 4444455567889999
Q ss_pred eeCCCCCC
Q 046626 550 RIDDESDN 557 (557)
Q Consensus 550 ~~l~~~~n 557 (557)
+.+++++|
T Consensus 227 ~~L~l~~N 234 (276)
T 2z62_A 227 QKIWLHTN 234 (276)
T ss_dssp CEEECCSS
T ss_pred cEEEccCC
Confidence 99999987
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=2.4e-16 Score=150.43 Aligned_cols=177 Identities=19% Similarity=0.212 Sum_probs=127.1
Q ss_pred cCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 318 KSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 318 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
.+++|+.|+++++.+..++ .+..+++|++|++++|. +..+| .+..+++|++|++++|......|..++.+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4567788888887777654 46778888888888875 55555 577888888888888765444444567888888888
Q ss_pred ccccccccccc-CcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCC
Q 046626 398 VSTKQKSLLES-GIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLP 476 (557)
Q Consensus 398 l~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 476 (557)
+++|.+..++. .++.+++|++|++++| .+..++.. ....+++|++|+++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~--------------------------~~~~l~~L~~L~l~~n- 167 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKG--------------------------VFDKLTNLTELDLSYN- 167 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------------------------TTTTCTTCCEEECCSS-
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHH--------------------------HhccCccCCEEECCCC-
Confidence 88888775544 3677888888888875 33333211 0134567777777775
Q ss_pred CCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 477 PLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 477 ~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
.+..+|...+ ..+++|+.|++++|...+..|..+..+++|+.|++++|+
T Consensus 168 ~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 168 QLQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 3445554432 678999999999999877777778999999999999975
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=4.9e-16 Score=159.12 Aligned_cols=248 Identities=22% Similarity=0.184 Sum_probs=143.1
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCe
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRY 347 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 347 (557)
..++.+.+.++.+.. ++ .+.++++|+.|.+..+..... |. ...+|++|++++|.+..+| .++.+++|++
T Consensus 131 ~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~l----p~---~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKKL----PD---LPPSLEFIAAGNNQLEELP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSCC----CC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCccc----CC---CcccccEEECcCCcCCcCc-cccCCCCCCE
Confidence 567777777776655 33 467777888887776654321 11 1246777777777777766 5777777777
Q ss_pred eeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccc
Q 046626 348 LDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENL 427 (557)
Q Consensus 348 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 427 (557)
|++++|. +..+|.. ..+|++|++++|. +..+| .++.+++|++|++++|.+..+|.. +++|++|++++|. +
T Consensus 200 L~l~~N~-l~~l~~~---~~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-l 269 (454)
T 1jl5_A 200 IYADNNS-LKKLPDL---PLSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-L 269 (454)
T ss_dssp EECCSSC-CSSCCCC---CTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-C
T ss_pred EECCCCc-CCcCCCC---cCcccEEECcCCc-CCccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-c
Confidence 7777774 5556642 2477777777775 34676 477777778887777777766542 3667777777643 3
Q ss_pred cccccceEecccCCCccccCccccccccc--c----------ccccCC-CCCcceEEEeCCCCCCCCChhhccCCCcccc
Q 046626 428 EYFSLETLMLKDCESLNLNLNIEMEGEES--H----------CDRNKT-RLHLRKLFVEGLPPLLELPQWLLQGSTKTLK 494 (557)
Q Consensus 428 ~~l~~~~~~l~~l~~l~l~~~~~~~~~~~--~----------~~~~~~-~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~ 494 (557)
..+|.. +.+++.|+++.|.....+.. . ...... ..+|++|+++++ .+..+|. .+++|+
T Consensus 270 ~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~ 340 (454)
T 1jl5_A 270 TDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA-----LPPRLE 340 (454)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC-----CCTTCC
T ss_pred cccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc-----cCCcCC
Confidence 334322 23444444444321110000 0 000011 247888888774 4555664 357889
Q ss_pred eEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCC--CCCCccccc-------------CceeeCCCCCC
Q 046626 495 NLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTG--EDWPKIAHI-------------PQVRIDDESDN 557 (557)
Q Consensus 495 ~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~--~~~~~~~~l-------------~~l~~l~~~~n 557 (557)
.|++++|.. +.+|. .+++|++|++++|+ ..+ ..+..+.++ ++|+.+++++|
T Consensus 341 ~L~L~~N~l-~~lp~---~l~~L~~L~L~~N~--------l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 341 RLIASFNHL-AEVPE---LPQNLKQLHVEYNP--------LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp EEECCSSCC-SCCCC---CCTTCCEEECCSSC--------CSSCCCCCTTCCEEECCC--------------------
T ss_pred EEECCCCcc-ccccc---hhhhccEEECCCCC--------CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 999998874 46776 47889999999863 222 233444455 78999998887
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1.2e-16 Score=152.57 Aligned_cols=186 Identities=18% Similarity=0.132 Sum_probs=85.9
Q ss_pred hhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccccccCCCCCc
Q 046626 316 ISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPKDIRYLVSLR 394 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 394 (557)
+..+++|++|++++|.+..++ .+..+++|++|++++|. +..+|. .++.+++|++|++++|......|..++.+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 344555555555555554432 44555555555555553 333332 234555555555555543322223345555555
Q ss_pred EEEccccccccccc-CcCCCCCCCeecccccccccccccc-eEecccCCCccccCccccccccccccccCCCCCcceEEE
Q 046626 395 MFMVSTKQKSLLES-GIGCLSSLRFLMISDCENLEYFSLE-TLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFV 472 (557)
Q Consensus 395 ~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 472 (557)
+|++++|.+..++. .++.+++|++|++++|. +..++.. +..+.+++.|+++.|....... .....+++|++|++
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPD---GVFDRLTSLQYIWL 212 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEEC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCH---HHHhCCcCCCEEEc
Confidence 55555555543332 23455555555555432 2222211 1122222222222221111000 01134556666666
Q ss_pred eCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCC
Q 046626 473 EGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEA 516 (557)
Q Consensus 473 ~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~ 516 (557)
++++-. +.+++|+.|+++.|...+.+|.+++.++.
T Consensus 213 ~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 213 HDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCCCcc---------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 664321 44556677777777666667766666554
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=5e-16 Score=146.29 Aligned_cols=175 Identities=15% Similarity=0.114 Sum_probs=139.5
Q ss_pred CCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcc
Q 046626 320 QFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVS 399 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 399 (557)
...++++++++.++.+|..+. ++|+.|++++|......|..+..+++|++|++++|......|..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457789999999999998776 589999999987444445578999999999999988666666678999999999999
Q ss_pred cccccccc-cCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCC
Q 046626 400 TKQKSLLE-SGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPL 478 (557)
Q Consensus 400 ~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 478 (557)
+|.+..+| ..++.+++|++|++++| .+..++.. ....+++|++|+++++ .+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~--------------------------~~~~l~~L~~L~Ls~N-~l 143 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSG--------------------------VFDRLTKLKELRLNTN-QL 143 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------------------------TTTTCTTCCEEECCSS-CC
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChh--------------------------HhccCCcccEEECcCC-cC
Confidence 99998665 55789999999999985 44433321 0134678888888875 56
Q ss_pred CCCCh-hhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 479 LELPQ-WLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 479 ~~lp~-~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
..+|. .+ +.+++|+.|+|++|...+..+..+..+++|+.|++++|+
T Consensus 144 ~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 144 QSIPAGAF--DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHHHc--CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 67776 45 788999999999998776666679999999999999965
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=4.6e-16 Score=148.26 Aligned_cols=197 Identities=19% Similarity=0.224 Sum_probs=143.8
Q ss_pred EEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCccCeee
Q 046626 271 CHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKHLRYLD 349 (557)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~ 349 (557)
+.+...+..+.. ++..+ ...++.|.+..+... ...+..+.++++|++|++++|.+..+|.. +..+++|++|+
T Consensus 19 ~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 19 NSVDCSSKKLTA--IPSNI--PADTKKLDLQSNKLS---SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCS---CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CEEEccCCCCCc--cCCCC--CCCCCEEECcCCCCC---eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 345555444443 22222 257889998876654 23344578899999999999999988776 47899999999
Q ss_pred ccCCcCccccch-hhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccC-cCCCCCCCeecccccccc
Q 046626 350 LSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESG-IGCLSSLRFLMISDCENL 427 (557)
Q Consensus 350 l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l 427 (557)
+++|. +..+|. .+..+++|++|++++|......|..++.+++|++|++++|.+..+|.. ++.+++|++|++++| .+
T Consensus 92 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 169 (270)
T 2o6q_A 92 VTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QL 169 (270)
T ss_dssp CCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred CCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cC
Confidence 99986 666664 468899999999999886555556678999999999999998876654 788999999999885 33
Q ss_pred cccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccc
Q 046626 428 EYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNF 504 (557)
Q Consensus 428 ~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~ 504 (557)
..++.. ....+++|++|+++++ .+..+|...+ ..+++|+.|+|++|+..
T Consensus 170 ~~~~~~--------------------------~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 170 KRVPEG--------------------------AFDKLTELKTLKLDNN-QLKRVPEGAF-DSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCCCTT--------------------------TTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred cEeChh--------------------------HhccCCCcCEEECCCC-cCCcCCHHHh-ccccCCCEEEecCCCee
Confidence 333210 1134578888888885 5567776532 67889999999999853
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.68 E-value=1e-15 Score=156.82 Aligned_cols=242 Identities=19% Similarity=0.153 Sum_probs=135.8
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCe
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRY 347 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 347 (557)
..++.+.+.++..... +. ..++|++|.+..+.... +| .+.++++|++|++++|.++.+|..+ .+|++
T Consensus 111 ~~L~~L~l~~n~l~~l--~~---~~~~L~~L~L~~n~l~~----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~ 177 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKAL--SD---LPPLLEYLGVSNNQLEK----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEF 177 (454)
T ss_dssp TTCCEEECCSSCCSCC--CS---CCTTCCEEECCSSCCSS----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCE
T ss_pred CCCcEEECCCCccCcc--cC---CCCCCCEEECcCCCCCC----Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccE
Confidence 4455555555544332 11 11566667666554432 22 3666777777777777776665433 36777
Q ss_pred eeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccc
Q 046626 348 LDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENL 427 (557)
Q Consensus 348 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 427 (557)
|++++|. +..+| .++.+++|++|++++|. +..+|... ++|++|++++|.+..+| .++.+++|++|++++| .+
T Consensus 178 L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N-~l 249 (454)
T 1jl5_A 178 IAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNN-LL 249 (454)
T ss_dssp EECCSSC-CSSCC-CCTTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CC
T ss_pred EECcCCc-CCcCc-cccCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCC-cC
Confidence 7777764 55566 47777777777777765 33455432 46777777777777666 4777788888888774 44
Q ss_pred cccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChh---h------------ccCCCcc
Q 046626 428 EYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQW---L------------LQGSTKT 492 (557)
Q Consensus 428 ~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~---~------------~~~~l~~ 492 (557)
..+|.. +.+++.|+++.|.....+ ....+|++|+++++. +..+|.. + .....++
T Consensus 250 ~~l~~~---~~~L~~L~l~~N~l~~l~-------~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~ 318 (454)
T 1jl5_A 250 KTLPDL---PPSLEALNVRDNYLTDLP-------ELPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPS 318 (454)
T ss_dssp SSCCSC---CTTCCEEECCSSCCSCCC-------CCCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTT
T ss_pred Cccccc---ccccCEEECCCCcccccC-------cccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCc
Confidence 445432 356666666665422211 112456666665542 2222210 0 0011146
Q ss_pred cceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 493 LKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 493 L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
|+.|++++|... .+|.. +++|++|++++|. ++.++ . .+++|+.+++++|
T Consensus 319 L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~-l~~lp--------~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 319 LEELNVSNNKLI-ELPAL---PPRLERLIASFNH-LAEVP--------E---LPQNLKQLHVEYN 367 (454)
T ss_dssp CCEEECCSSCCS-CCCCC---CTTCCEEECCSSC-CSCCC--------C---CCTTCCEEECCSS
T ss_pred CCEEECCCCccc-ccccc---CCcCCEEECCCCc-ccccc--------c---hhhhccEEECCCC
Confidence 666666666543 35542 4677777777752 22111 1 3577888888776
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=5.2e-16 Score=149.25 Aligned_cols=200 Identities=22% Similarity=0.146 Sum_probs=156.9
Q ss_pred hhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcE
Q 046626 316 ISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRM 395 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 395 (557)
+.++++++.++++++.++.+|..+. ++++.|++++|......|..+..+++|++|++++|. +..+|.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCE
Confidence 4578899999999999999998775 689999999997444446779999999999999987 5556654 78999999
Q ss_pred EEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCC
Q 046626 396 FMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGL 475 (557)
Q Consensus 396 L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 475 (557)
|++++|.+..+|..+..+++|++|++++| .+..++.. ....+++|++|+++++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~--------------------------~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLG--------------------------ALRGLGELQELYLKGN 134 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSS--------------------------TTTTCTTCCEEECTTS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHH--------------------------HHcCCCCCCEEECCCC
Confidence 99999999999999999999999999985 44433311 1145678888888885
Q ss_pred CCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCC
Q 046626 476 PPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDES 555 (557)
Q Consensus 476 ~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~ 555 (557)
.+..+|...+ ..+++|+.|+|++|......+..+..+++|+.|++++|. +. ..+..+...++|+.++++
T Consensus 135 -~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~--------l~-~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 135 -ELKTLPPGLL-TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS--------LY-TIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp -CCCCCCTTTT-TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC--------CC-CCCTTTTTTCCCSEEECC
T ss_pred -CCCccChhhc-ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc--------CC-ccChhhcccccCCeEEeC
Confidence 5566776543 678999999999998664444457889999999999963 32 233455667788888888
Q ss_pred CC
Q 046626 556 DN 557 (557)
Q Consensus 556 ~n 557 (557)
+|
T Consensus 204 ~N 205 (290)
T 1p9a_G 204 GN 205 (290)
T ss_dssp SC
T ss_pred CC
Confidence 77
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=2.1e-15 Score=159.31 Aligned_cols=218 Identities=22% Similarity=0.138 Sum_probs=173.7
Q ss_pred CCCceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCcc
Q 046626 266 IPKRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHL 345 (557)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L 345 (557)
.+..++.+.+.++.+... +. .+++|+.|.+..+....... .+++|+.|++++|.++.+|.. +++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~l--p~---~l~~L~~L~Ls~N~l~~l~~-------~l~~L~~L~L~~N~l~~lp~~---l~~L 143 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSL--PV---LPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLPVL---PPGL 143 (622)
T ss_dssp CCTTCCEEEECSCCCSCC--CC---CCTTCCEEEECSCCCCCCCC-------CCTTCCEEECCSSCCSCCCCC---CTTC
T ss_pred cCCCCCEEEcCCCcCCcC--CC---CCCCCCEEECcCCcCCCCCC-------CCCCcCEEECCCCCCCcCCCC---CCCC
Confidence 456889999998877653 22 78999999998776553211 568899999999999998875 4889
Q ss_pred CeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccc
Q 046626 346 RYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 425 (557)
++|++++|. +..+|. .+.+|+.|++++|. +..+| ..+++|+.|++++|.+..+|.. +++|+.|++++|
T Consensus 144 ~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N- 211 (622)
T 3g06_A 144 QELSVSDNQ-LASLPA---LPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNN- 211 (622)
T ss_dssp CEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-
T ss_pred CEEECcCCc-CCCcCC---ccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCC-
Confidence 999999995 778886 45789999999987 56677 5678999999999999988753 578999999985
Q ss_pred cccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccc
Q 046626 426 NLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFM 505 (557)
Q Consensus 426 ~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~ 505 (557)
.+..+|.. +.+++.|+++.|.....+ ..+++|++|+++++ .+..+|. .+++|+.|+|++|.+.
T Consensus 212 ~l~~l~~~---~~~L~~L~Ls~N~L~~lp-------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 212 RLTSLPAL---PSGLKELIVSGNRLTSLP-------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp CCSSCCCC---CTTCCEEECCSSCCSCCC-------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCC-
T ss_pred cccccCCC---CCCCCEEEccCCccCcCC-------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCCCC-
Confidence 56666642 477888888877533211 34589999999996 6677875 4689999999999755
Q ss_pred cCCccCCCCCCcceeeecCCCc
Q 046626 506 ALPESLRNLEALETLAIGGCPA 527 (557)
Q Consensus 506 ~lp~~l~~l~~L~~L~l~~c~~ 527 (557)
.+|..+.++++|+.|++++|+-
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCC
T ss_pred cCCHHHhhccccCEEEecCCCC
Confidence 8899999999999999999873
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=155.12 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=163.2
Q ss_pred CCcceEeeCCCChh-----hhccccCCCCccCeeeccCCcCccccchhh--hcCCcCcEeecCCcCCCcccc----cccc
Q 046626 320 QFLRVIDLSETAIE-----VLSREIGNLKHLRYLDLSDNDKIKKLPNSI--CELHSLQTLSLGGCRELEELP----KDIR 388 (557)
Q Consensus 320 ~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~--~~l~~L~~L~l~~~~~~~~~p----~~~~ 388 (557)
..++.+.+.++.+. .++. ...+++|++|++++|...+..|..+ ..+++|++|++++|......| ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34677888877665 2222 2234679999999998666788877 899999999999998766544 3456
Q ss_pred CCCCCcEEEccccccccc-ccCcCCCCCCCeecccccccccc--cc--cceEecccCCCccccCccccccccccccccCC
Q 046626 389 YLVSLRMFMVSTKQKSLL-ESGIGCLSSLRFLMISDCENLEY--FS--LETLMLKDCESLNLNLNIEMEGEESHCDRNKT 463 (557)
Q Consensus 389 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~--l~--~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~ 463 (557)
.+++|++|++++|.+..+ +..++.+++|++|++++|..... ++ .....+.+++.|+++.|.....+.........
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 799999999999999854 57899999999999999764432 22 22346788999999888643211111111245
Q ss_pred CCCcceEEEeCCCCCCCCChhhccCCC---cccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCC
Q 046626 464 RLHLRKLFVEGLPPLLELPQWLLQGST---KTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDW 540 (557)
Q Consensus 464 ~~~L~~L~l~~~~~l~~lp~~~~~~~l---~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 540 (557)
+++|++|+++++.-....|..+ ..+ ++|++|+|++|... .+|..+. ++|++|++++| .+.+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~--~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N--------~l~~~-- 287 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSA--PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN--------RLNRA-- 287 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCC--SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC--------CCCSC--
T ss_pred CCCCCEEECCCCCCCccchhhH--HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC--------cCCCC--
Confidence 6899999999965443347666 444 79999999999865 7888774 89999999995 44432
Q ss_pred CcccccCceeeCCCCCC
Q 046626 541 PKIAHIPQVRIDDESDN 557 (557)
Q Consensus 541 ~~~~~l~~l~~l~~~~n 557 (557)
+.+..+++|+.+++++|
T Consensus 288 ~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCTTSCCCCSCEECSST
T ss_pred chhhhCCCccEEECcCC
Confidence 23578899999999988
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=1e-17 Score=165.28 Aligned_cols=226 Identities=17% Similarity=0.086 Sum_probs=170.0
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhcC--CCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccc-cchhhhcCCc
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISKS--QFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKK-LPNSICELHS 368 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~ 368 (557)
....+.+.+..+... +..+.++ +++++|+++++.+...+..+..+++|++|++++|..... +|..+..+++
T Consensus 46 ~~~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp STTSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred chhheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 345778888754433 3345555 789999999999998777788999999999999973333 8888999999
Q ss_pred CcEeecCCcCCCccccccccCCCCCcEEEcccc-ccc--ccccCcCCCCCCCeecccccccccc--cccceEecc-cCCC
Q 046626 369 LQTLSLGGCRELEELPKDIRYLVSLRMFMVSTK-QKS--LLESGIGCLSSLRFLMISDCENLEY--FSLETLMLK-DCES 442 (557)
Q Consensus 369 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~--~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~l~-~l~~ 442 (557)
|++|++++|......|..++.+++|++|++++| .++ .++..++.+++|++|++++|..+.. ++.....+. +++.
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 999999999877788888999999999999999 566 3666788899999999999856654 444455667 8888
Q ss_pred ccccCccccccccccccccCCCCCcceEEEeCCCCCC-CCChhhccCCCcccceEecccccccc-cCCccCCCCCCccee
Q 046626 443 LNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLL-ELPQWLLQGSTKTLKNLIIRNCPNFM-ALPESLRNLEALETL 520 (557)
Q Consensus 443 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~lp~~~~~~~l~~L~~L~L~~c~~~~-~lp~~l~~l~~L~~L 520 (557)
|+++.+.....+.........+++|++|++++|..+. ..+..+ ..+++|+.|++++|.... .....++.+++|+.|
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF--FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG--GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH--hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 8887774211111111222457899999999987443 456666 678999999999996221 111257789999999
Q ss_pred eecCC
Q 046626 521 AIGGC 525 (557)
Q Consensus 521 ~l~~c 525 (557)
++++|
T Consensus 278 ~l~~~ 282 (336)
T 2ast_B 278 QVFGI 282 (336)
T ss_dssp ECTTS
T ss_pred eccCc
Confidence 99997
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=8.6e-16 Score=149.21 Aligned_cols=194 Identities=19% Similarity=0.218 Sum_probs=154.6
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCe
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRY 347 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~ 347 (557)
..++.+.+.++.+... ..+..+++|+.|.+..+...... . +.++++|++|++++|.+..++ .+..+++|++
T Consensus 41 ~~L~~L~l~~~~i~~l---~~~~~l~~L~~L~L~~n~i~~~~----~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI---EGVQYLNNLIGLELKDNQITDLA----P-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCG----G-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred CCcCEEEeeCCCccCc---hhhhccCCCCEEEccCCcCCCCh----h-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 5678888888877664 35778999999999877665322 2 788999999999999999875 6899999999
Q ss_pred eeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccc
Q 046626 348 LDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENL 427 (557)
Q Consensus 348 L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 427 (557)
|++++|. +..+|. +..+++|++|++++|. +..+|. ++.+++|++|++++|.+..++. +..+++|+.|++++|. +
T Consensus 112 L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l 185 (308)
T 1h6u_A 112 LDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-I 185 (308)
T ss_dssp EECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-C
T ss_pred EECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-c
Confidence 9999996 777876 9999999999999987 455554 8899999999999999998766 8999999999999853 3
Q ss_pred cccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccC
Q 046626 428 EYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMAL 507 (557)
Q Consensus 428 ~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~l 507 (557)
..++. ...+++|++|+++++ .+..++. + ..+++|+.|++++|+.. ..
T Consensus 186 ~~~~~----------------------------l~~l~~L~~L~L~~N-~l~~~~~-l--~~l~~L~~L~l~~N~i~-~~ 232 (308)
T 1h6u_A 186 SDISP----------------------------LASLPNLIEVHLKNN-QISDVSP-L--ANTSNLFIVTLTNQTIT-NQ 232 (308)
T ss_dssp CCCGG----------------------------GGGCTTCCEEECTTS-CCCBCGG-G--TTCTTCCEEEEEEEEEE-CC
T ss_pred CcChh----------------------------hcCCCCCCEEEccCC-ccCcccc-c--cCCCCCCEEEccCCeee-cC
Confidence 43321 134567888888775 4455653 5 77899999999999854 44
Q ss_pred Cc
Q 046626 508 PE 509 (557)
Q Consensus 508 p~ 509 (557)
|.
T Consensus 233 ~~ 234 (308)
T 1h6u_A 233 PV 234 (308)
T ss_dssp CE
T ss_pred Ce
Confidence 44
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=1.9e-17 Score=166.59 Aligned_cols=238 Identities=14% Similarity=0.103 Sum_probs=120.1
Q ss_pred cccCCCCCcEEEecCCCccc-hhHHHHHHhhcCCCcceEeeCCCChh----hhccc-------cCCCCccCeeeccCCcC
Q 046626 288 LLSDLRRARTILFPINDEKT-NQSILTSCISKSQFLRVIDLSETAIE----VLSRE-------IGNLKHLRYLDLSDNDK 355 (557)
Q Consensus 288 ~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~~~-------~~~l~~L~~L~l~~~~~ 355 (557)
.+..+++|+.|.+..+.... ....+...+.++++|++|++++|.+. .+|.. +..+++|++|+|++|..
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 34455566666665443331 11223344555666666666654332 12222 25556666666666542
Q ss_pred cc----ccchhhhcCCcCcEeecCCcCCCcc----ccccccCC---------CCCcEEEccccccc--ccc---cCcCCC
Q 046626 356 IK----KLPNSICELHSLQTLSLGGCRELEE----LPKDIRYL---------VSLRMFMVSTKQKS--LLE---SGIGCL 413 (557)
Q Consensus 356 ~~----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l---------~~L~~L~l~~~~~~--~~~---~~~~~l 413 (557)
.. .+|..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+. .++ ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 22 2555566666666666666654222 22222233 56666666666554 222 344555
Q ss_pred CCCCeeccccccccc------ccccceEecccCCCccccCccccccc-cccccccCCCCCcceEEEeCCCCCCC----CC
Q 046626 414 SSLRFLMISDCENLE------YFSLETLMLKDCESLNLNLNIEMEGE-ESHCDRNKTRLHLRKLFVEGLPPLLE----LP 482 (557)
Q Consensus 414 ~~L~~L~l~~c~~l~------~l~~~~~~l~~l~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~----lp 482 (557)
++|++|++++|. +. ..+..+..+.+++.|+++.|...... .........+++|++|+++++.-... +|
T Consensus 187 ~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 187 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 666666666542 22 11213334455555555554321000 01111224556777777777542211 34
Q ss_pred hhhccCCCcccceEecccccccc----cCCccC-CCCCCcceeeecCCC
Q 046626 483 QWLLQGSTKTLKNLIIRNCPNFM----ALPESL-RNLEALETLAIGGCP 526 (557)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~c~~~~----~lp~~l-~~l~~L~~L~l~~c~ 526 (557)
..+..+.+++|+.|+|++|.+.. .+|..+ .++++|++|++++|+
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 44411336777777777777555 366665 557777777777753
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=4.1e-16 Score=154.53 Aligned_cols=220 Identities=18% Similarity=0.158 Sum_probs=149.8
Q ss_pred CCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccc-cccccCCCCCcEE
Q 046626 320 QFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEEL-PKDIRYLVSLRMF 396 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L 396 (557)
++++.|+|++|+++.+|+ .+.++++|++|+|++|...+.+|. .|..+++|+++...++..+..+ |..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 568888888888888876 478888999999988875566664 4667888776544433345555 5567888899999
Q ss_pred Eccccccccccc-CcCCCCCCCeecccccccccccccc-eEec-ccCCCccccCccccccccccccccCCCCCcceEEEe
Q 046626 397 MVSTKQKSLLES-GIGCLSSLRFLMISDCENLEYFSLE-TLML-KDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVE 473 (557)
Q Consensus 397 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l-~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 473 (557)
++++|.+..+|. .+....++..|++.+++.+..++.. +..+ ..++.|+++.|.....+... ....+|+++.+.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----f~~~~L~~l~l~ 185 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----FNGTQLDELNLS 185 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----STTEEEEEEECT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----ccccchhHHhhc
Confidence 998888875543 4455667778888777777777543 2222 23555666666533222211 344678888888
Q ss_pred CCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCC
Q 046626 474 GLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDD 553 (557)
Q Consensus 474 ~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~ 553 (557)
++..+..+|...+ ..+++|+.|+|++|. ++.+|. ..+.+|+.|.+.+|..+++++ .+..+++|+.++
T Consensus 186 ~~n~l~~i~~~~f-~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~~l~~lP---------~l~~l~~L~~l~ 252 (350)
T 4ay9_X 186 DNNNLEELPNDVF-HGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTYNLKKLP---------TLEKLVALMEAS 252 (350)
T ss_dssp TCTTCCCCCTTTT-TTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCTTCCCCC---------CTTTCCSCCEEE
T ss_pred cCCcccCCCHHHh-ccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCCCcCcCC---------CchhCcChhhCc
Confidence 8888888887543 678899999999986 556775 336677777777776665543 345566666666
Q ss_pred CCC
Q 046626 554 ESD 556 (557)
Q Consensus 554 ~~~ 556 (557)
+++
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=8.1e-16 Score=143.73 Aligned_cols=183 Identities=11% Similarity=0.154 Sum_probs=139.6
Q ss_pred ChhhhccccCCCCccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccc-cccCCCCCcEEEccc-ccccccc
Q 046626 331 AIEVLSREIGNLKHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVST-KQKSLLE 407 (557)
Q Consensus 331 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~-~~~~~~~ 407 (557)
.++.+|. +. .+|++|++++|. +..+|. .+..+++|++|++++|..+..+|. .+..+++|++|++++ |.+..++
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 3667777 43 389999999986 777765 788999999999999975666665 788999999999998 8888665
Q ss_pred -cCcCCCCCCCeecccccccccccccceEecccCC---CccccCc-cccccccccccccCCCCCcc-eEEEeCCCCCCCC
Q 046626 408 -SGIGCLSSLRFLMISDCENLEYFSLETLMLKDCE---SLNLNLN-IEMEGEESHCDRNKTRLHLR-KLFVEGLPPLLEL 481 (557)
Q Consensus 408 -~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~---~l~l~~~-~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l 481 (557)
..++.+++|++|++++| .+..+|. +..+.+++ .|+++.| .....+.. ....+++|+ +|+++++ .+..+
T Consensus 98 ~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n-~l~~i 171 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNN-GFTSV 171 (239)
T ss_dssp TTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSC-CCCEE
T ss_pred HHHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCC-CCccc
Confidence 56889999999999985 4566775 55566666 7777776 32221111 125678899 9999885 56688
Q ss_pred ChhhccCCCcccceEeccccc-ccccCCccCCCC-CCcceeeecCC
Q 046626 482 PQWLLQGSTKTLKNLIIRNCP-NFMALPESLRNL-EALETLAIGGC 525 (557)
Q Consensus 482 p~~~~~~~l~~L~~L~L~~c~-~~~~lp~~l~~l-~~L~~L~l~~c 525 (557)
|...+ ..++|+.|+|++|. .....+..+..+ ++|+.|++++|
T Consensus 172 ~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 172 QGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp CTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred CHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 87763 33799999999995 544445678889 99999999995
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=1.2e-17 Score=168.07 Aligned_cols=238 Identities=15% Similarity=0.066 Sum_probs=172.8
Q ss_pred HHHHHHhhcCCCcceEeeCCCChhh-----hccccCCCCccCeeeccCCc---Cccccchhh-------hcCCcCcEeec
Q 046626 310 SILTSCISKSQFLRVIDLSETAIEV-----LSREIGNLKHLRYLDLSDND---KIKKLPNSI-------CELHSLQTLSL 374 (557)
Q Consensus 310 ~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~---~~~~lp~~~-------~~l~~L~~L~l 374 (557)
..+...+..+++|++|++++|.+.. ++..+..+++|++|+|++|. ....+|..+ ..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4455668889999999999998873 44567889999999999973 122456555 68999999999
Q ss_pred CCcCCCc----cccccccCCCCCcEEEcccccccc-----cccCcCCC---------CCCCeecccccccc-cccc---c
Q 046626 375 GGCRELE----ELPKDIRYLVSLRMFMVSTKQKSL-----LESGIGCL---------SSLRFLMISDCENL-EYFS---L 432 (557)
Q Consensus 375 ~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~l---------~~L~~L~l~~c~~l-~~l~---~ 432 (557)
++|.... .+|..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|..- ..++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9998665 478889999999999999998862 23334444 89999999987533 2333 2
Q ss_pred ceEecccCCCccccCccccccc-ccccc-ccCCCCCcceEEEeCCCCC----CCCChhhccCCCcccceEeccccccccc
Q 046626 433 ETLMLKDCESLNLNLNIEMEGE-ESHCD-RNKTRLHLRKLFVEGLPPL----LELPQWLLQGSTKTLKNLIIRNCPNFMA 506 (557)
Q Consensus 433 ~~~~l~~l~~l~l~~~~~~~~~-~~~~~-~~~~~~~L~~L~l~~~~~l----~~lp~~~~~~~l~~L~~L~L~~c~~~~~ 506 (557)
.+..+.+++.|+++.|...... ..... ....+++|++|+++++.-. ..+|..+ ..+++|+.|+|++|.+...
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l--~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL--KSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG--GGCTTCCEEECTTCCCCHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH--ccCCCcCEEECCCCCCchh
Confidence 3345667888888877532111 00111 3467789999999997531 4577777 7889999999999986654
Q ss_pred ----CCccC--CCCCCcceeeecCCCccccccCCCCC----CCCCcc-cccCceeeCCCCCC
Q 046626 507 ----LPESL--RNLEALETLAIGGCPALSERCKPQTG----EDWPKI-AHIPQVRIDDESDN 557 (557)
Q Consensus 507 ----lp~~l--~~l~~L~~L~l~~c~~l~~~~~~~~~----~~~~~~-~~l~~l~~l~~~~n 557 (557)
+|..+ +.+++|+.|++++|. +.. ..+..+ .++++|+.+++++|
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~--------i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNE--------IELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSC--------CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCc--------CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 56666 449999999999974 222 122233 55899999999887
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=1.2e-17 Score=172.31 Aligned_cols=180 Identities=18% Similarity=0.181 Sum_probs=100.5
Q ss_pred ceEEEEeecCCCCcc---cccccccCCCCCcEEEecCCCccch-hHHHHHH-hhcCCCcceEeeCCCChhh-----hccc
Q 046626 269 RVCHLSFVGANTSRN---DFSSLLSDLRRARTILFPINDEKTN-QSILTSC-ISKSQFLRVIDLSETAIEV-----LSRE 338 (557)
Q Consensus 269 ~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~-----l~~~ 338 (557)
.++.+.+.++.+... .++..+..+++|+.|.+..+..... ...+... ....++|++|++++|.+.. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 577777777766542 2345566777888888776554311 1111111 2224567777777776652 3455
Q ss_pred cCCCCccCeeeccCCcCccccchhhh-----cCCcCcEeecCCcCCCcc----ccccccCCCCCcEEEccccccccc---
Q 046626 339 IGNLKHLRYLDLSDNDKIKKLPNSIC-----ELHSLQTLSLGGCRELEE----LPKDIRYLVSLRMFMVSTKQKSLL--- 406 (557)
Q Consensus 339 ~~~l~~L~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~--- 406 (557)
+..+++|++|++++|......+..+. ..++|++|++++|..... +|..+..+++|++|++++|.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 55667777777777652222222222 245777777777654332 455666677777777777765521
Q ss_pred ---ccCcCCCCCCCeecccccccccc-----cccceEecccCCCccccCcc
Q 046626 407 ---ESGIGCLSSLRFLMISDCENLEY-----FSLETLMLKDCESLNLNLNI 449 (557)
Q Consensus 407 ---~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~l~~l~l~~~~ 449 (557)
+..+..+++|++|++++| .+.. ++..+..+.+++.|+++.|.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 222234677777777765 3333 33333334556666665553
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=1.2e-17 Score=172.49 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=80.7
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccc-hhHHHHHHhhcCCCcceEeeCCCChhhh-cccc-CCCC-
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKT-NQSILTSCISKSQFLRVIDLSETAIEVL-SREI-GNLK- 343 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~-~~l~- 343 (557)
..++.+.+..+.+....+...+..+++++++.+..+.... ....++..+..+++|++|++++|.+... +..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4455666665555554444445566666666666555431 1224455566666666666666665521 2111 2233
Q ss_pred ---ccCeeeccCCcCcc-----ccchhhhcCCcCcEeecCCcCCCccccccc-----cCCCCCcEEEcccccccc-----
Q 046626 344 ---HLRYLDLSDNDKIK-----KLPNSICELHSLQTLSLGGCRELEELPKDI-----RYLVSLRMFMVSTKQKSL----- 405 (557)
Q Consensus 344 ---~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~-----~~l~~L~~L~l~~~~~~~----- 405 (557)
+|++|++++|. +. .+|..+..+++|++|++++|......+..+ ...++|++|++++|.+..
T Consensus 83 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 46666666664 33 345556666666666666665322222211 123456666666655442
Q ss_pred cccCcCCCCCCCeeccccc
Q 046626 406 LESGIGCLSSLRFLMISDC 424 (557)
Q Consensus 406 ~~~~~~~l~~L~~L~l~~c 424 (557)
++..+..+++|++|++++|
T Consensus 162 l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHHHCTTCCEEECCSS
T ss_pred HHHHHhhCCCCCEEECcCC
Confidence 2333444555666666554
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=3.7e-15 Score=155.52 Aligned_cols=177 Identities=20% Similarity=0.222 Sum_probs=130.1
Q ss_pred CCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcc
Q 046626 320 QFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVS 399 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 399 (557)
.+|+.|++++|.+..+|..+. ++|++|+|++|. +..+| ..+++|++|++++|. +..+|. ++. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 378888888888888877663 678888888875 66788 457888888888876 444777 555 88888888
Q ss_pred cccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCC
Q 046626 400 TKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLL 479 (557)
Q Consensus 400 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 479 (557)
+|.+..+|. .+++|++|++++| .+..+|. .+.+++.|+++.|.....+. + . ++|++|+++++ .+.
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l----~--~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQLTFLPE-L----P--ESLEALDVSTN-LLE 193 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC-C----C--TTCCEEECCSS-CCS
T ss_pred CCcCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCCCCCcch-h----h--CCCCEEECcCC-CCC
Confidence 888887776 5788888888874 4555665 46777888887775333222 1 1 78899999885 566
Q ss_pred CCChhhccCCCccc-------ceEecccccccccCCccCCCCCCcceeeecCCCc
Q 046626 480 ELPQWLLQGSTKTL-------KNLIIRNCPNFMALPESLRNLEALETLAIGGCPA 527 (557)
Q Consensus 480 ~lp~~~~~~~l~~L-------~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~ 527 (557)
.+|. + .. +| +.|+|++|.+ +.+|..+..+++|+.|++++|+-
T Consensus 194 ~lp~-~--~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 194 SLPA-V--PV--RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SCCC-C--C----------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSC
T ss_pred chhh-H--HH--hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcC
Confidence 8887 5 32 66 9999999874 46888888899999999999763
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=2e-15 Score=136.50 Aligned_cols=148 Identities=17% Similarity=0.170 Sum_probs=92.0
Q ss_pred CCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEc
Q 046626 319 SQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMV 398 (557)
Q Consensus 319 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 398 (557)
+++|+.|+++++.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 455666666666666655 5666666666666666 344444 3666666666666666655455666666666666666
Q ss_pred cccccc-ccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCC
Q 046626 399 STKQKS-LLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPP 477 (557)
Q Consensus 399 ~~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 477 (557)
++|.+. ..|..++.+++|++|++++|..+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i-------------------------------------------------- 149 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAI-------------------------------------------------- 149 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBC--------------------------------------------------
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCc--------------------------------------------------
Confidence 666665 34455666666666666654322
Q ss_pred CCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCC
Q 046626 478 LLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGC 525 (557)
Q Consensus 478 l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c 525 (557)
..+| .+ ..+++|+.|++++|... .++ .+..+++|+.|+++++
T Consensus 150 -~~~~-~l--~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 150 -TDIM-PL--KTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp -CCCG-GG--GGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC
T ss_pred -cccH-hh--cCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCc
Confidence 2333 23 55677888888887643 354 4777888888888875
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.2e-14 Score=136.89 Aligned_cols=157 Identities=19% Similarity=0.170 Sum_probs=112.4
Q ss_pred CCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEc
Q 046626 320 QFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMV 398 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 398 (557)
+.++.|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++++|......|..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 467888888888886644 5788888888888888633344455788888888888888755444456778888888888
Q ss_pred ccccccccccC-cCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCC
Q 046626 399 STKQKSLLESG-IGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPP 477 (557)
Q Consensus 399 ~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 477 (557)
++|.+..+|.. ++.+++|++|++++| .+..++.. ....+++|++|+++++ .
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~--------------------------~~~~l~~L~~L~L~~N-~ 166 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAG--------------------------AFDKLTNLQTLSLSTN-Q 166 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------------------------TTTTCTTCCEEECCSS-C
T ss_pred CCCcCCCcChhHhccCCcccEEECcCC-cCCccCHH--------------------------HcCcCcCCCEEECCCC-c
Confidence 88888866554 578888888888875 44433321 0134567777777774 4
Q ss_pred CCCCCh-hhccCCCcccceEeccccccccc
Q 046626 478 LLELPQ-WLLQGSTKTLKNLIIRNCPNFMA 506 (557)
Q Consensus 478 l~~lp~-~~~~~~l~~L~~L~L~~c~~~~~ 506 (557)
+..+|. .+ ..+++|+.|+|++|+....
T Consensus 167 l~~~~~~~~--~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 167 LQSVPHGAF--DRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSCCCTTTT--TTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHH--hCCCCCCEEEeeCCceeCC
Confidence 455655 44 7789999999999986543
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=3.7e-15 Score=143.44 Aligned_cols=171 Identities=19% Similarity=0.254 Sum_probs=100.2
Q ss_pred cCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcC
Q 046626 290 SDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSL 369 (557)
Q Consensus 290 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 369 (557)
..+++++.+.+..+..... + .+..+++|++|++++|.+..+++ +..+++|++|++++|. +..+|. +..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~----~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV----Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC----T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTC
T ss_pred hhcCcccEEEccCCCcccC----h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCC
Confidence 3456666666665544321 1 25556667777777666666555 6666667777776664 555554 6666667
Q ss_pred cEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCcc
Q 046626 370 QTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNI 449 (557)
Q Consensus 370 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~ 449 (557)
++|++++|. +..+ ..+..+++|++|++++|.+..+ ..++.+++|++|++++|. +..++.
T Consensus 115 ~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~----------------- 173 (291)
T 1h6t_A 115 KSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP----------------- 173 (291)
T ss_dssp CEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-----------------
T ss_pred CEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-----------------
Confidence 777776665 3333 3566666666666666666655 356666666666666542 222210
Q ss_pred ccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEeccccccc
Q 046626 450 EMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNF 504 (557)
Q Consensus 450 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~ 504 (557)
...+++|++|+++++ .+..+|. + ..+++|+.|++++|+..
T Consensus 174 -----------l~~l~~L~~L~L~~N-~i~~l~~-l--~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 174 -----------LAGLTKLQNLYLSKN-HISDLRA-L--AGLKNLDVLELFSQECL 213 (291)
T ss_dssp -----------GTTCTTCCEEECCSS-CCCBCGG-G--TTCTTCSEEEEEEEEEE
T ss_pred -----------hcCCCccCEEECCCC-cCCCChh-h--ccCCCCCEEECcCCccc
Confidence 134456666666664 3445543 4 56677777777777644
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=1.4e-14 Score=143.45 Aligned_cols=216 Identities=13% Similarity=0.159 Sum_probs=154.0
Q ss_pred ceEeeCCCChhhhccccCCCCccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccc-cccCCCCCcE-EEcc
Q 046626 323 RVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPK-DIRYLVSLRM-FMVS 399 (557)
Q Consensus 323 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~-L~l~ 399 (557)
++++.++++++.+|..+. +++++|+|++|. ++.+|. .|..+++|++|++++|.....+|. .+..+++++. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567888899999998773 689999999985 888886 589999999999999997777775 4678888775 5666
Q ss_pred ccccccc-ccCcCCCCCCCeecccccccccccc-cceEecccCCCccccCccccc-cccccccccCCCCCcceEEEeCCC
Q 046626 400 TKQKSLL-ESGIGCLSSLRFLMISDCENLEYFS-LETLMLKDCESLNLNLNIEME-GEESHCDRNKTRLHLRKLFVEGLP 476 (557)
Q Consensus 400 ~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~l~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 476 (557)
+|.+..+ |..+..+++|++|++++|. +..++ ..+.....+..+++..+.... ..... .......++.|++++ .
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~--f~~~~~~l~~L~L~~-N 164 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS--FVGLSFESVILWLNK-N 164 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS--STTSBSSCEEEECCS-S
T ss_pred CCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccc--hhhcchhhhhhcccc-c
Confidence 7888865 5678999999999999854 44443 223333333344432221111 01100 012234688899988 4
Q ss_pred CCCCCChhhccCCCcccceEecccccccccCCc-cCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCC
Q 046626 477 PLLELPQWLLQGSTKTLKNLIIRNCPNFMALPE-SLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDES 555 (557)
Q Consensus 477 ~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~ 555 (557)
.+..+|... ....+|++|++.+|+.++.+|. .|..+++|++|++++| .+.......+.++++|+.++..
T Consensus 165 ~i~~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N--------~l~~lp~~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 165 GIQEIHNSA--FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT--------RIHSLPSYGLENLKKLRARSTY 234 (350)
T ss_dssp CCCEECTTS--STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS--------CCCCCCSSSCTTCCEEECTTCT
T ss_pred cccCCChhh--ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC--------CcCccChhhhccchHhhhccCC
Confidence 677888877 4667999999998777888876 5799999999999995 3333334456677777766653
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=2.5e-14 Score=151.02 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=47.8
Q ss_pred CCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEc
Q 046626 319 SQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMV 398 (557)
Q Consensus 319 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 398 (557)
+++|+.|+++++.+..++ .+..+++|+.|+|++|. +..+|. +..+++|+.|+|++|. +..+| .+..+++|+.|++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 344555555555554443 34445555555555543 444443 4555555555555543 22333 4445555555555
Q ss_pred ccccccccccCcCCCCCCCeecccc
Q 046626 399 STKQKSLLESGIGCLSSLRFLMISD 423 (557)
Q Consensus 399 ~~~~~~~~~~~~~~l~~L~~L~l~~ 423 (557)
++|.+..++ .++.+++|+.|+|++
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGN 140 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCS
T ss_pred cCCCCCCCc-cccCCCccCEEECCC
Confidence 555554432 344555555555554
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=2e-15 Score=150.29 Aligned_cols=239 Identities=14% Similarity=0.078 Sum_probs=137.6
Q ss_pred ccccccCCCCCcEEEecCCCccc-hhHHHHHHhhcCC-CcceEeeCCCChhhh-ccccCCC-----CccCeeeccCCcCc
Q 046626 285 FSSLLSDLRRARTILFPINDEKT-NQSILTSCISKSQ-FLRVIDLSETAIEVL-SREIGNL-----KHLRYLDLSDNDKI 356 (557)
Q Consensus 285 ~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~l-----~~L~~L~l~~~~~~ 356 (557)
++......++|+.|.+..+.... ....+...+.+++ +|++|++++|.+... +..+..+ ++|++|++++|...
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 34444555568888887666542 2233345667777 788888888877743 3444443 77888888887532
Q ss_pred cccchh----hhcC-CcCcEeecCCcCCCccccccc----cC-CCCCcEEEccccccc-----ccccCcCCCC-CCCeec
Q 046626 357 KKLPNS----ICEL-HSLQTLSLGGCRELEELPKDI----RY-LVSLRMFMVSTKQKS-----LLESGIGCLS-SLRFLM 420 (557)
Q Consensus 357 ~~lp~~----~~~l-~~L~~L~l~~~~~~~~~p~~~----~~-l~~L~~L~l~~~~~~-----~~~~~~~~l~-~L~~L~ 420 (557)
...+.. +..+ ++|++|++++|......+..+ .. .++|++|++++|.+. .++..+..+. +|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 233333 3344 778888888877544333332 23 257888888887776 3333444554 788888
Q ss_pred ccccccccccccceEe----c-ccCCCccccCccccccccc-cccccCC-CCCcceEEEeCCCCCCCCCh-----hhccC
Q 046626 421 ISDCENLEYFSLETLM----L-KDCESLNLNLNIEMEGEES-HCDRNKT-RLHLRKLFVEGLPPLLELPQ-----WLLQG 488 (557)
Q Consensus 421 l~~c~~l~~l~~~~~~----l-~~l~~l~l~~~~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~~l~~lp~-----~~~~~ 488 (557)
+++|..-...+..+.. . .+++.|+++.|........ ....... .++|++|+++++. +...+. .+ .
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~--~ 250 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLK--D 250 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTT--T
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHH--h
Confidence 8876432222211111 1 4666677766653221111 1111122 3578888888753 333322 22 5
Q ss_pred CCcccceEeccccccc-------ccCCccCCCCCCcceeeecCCC
Q 046626 489 STKTLKNLIIRNCPNF-------MALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 489 ~l~~L~~L~L~~c~~~-------~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
.+++|+.|+|++|... ..++..+..+++|+.|++++|+
T Consensus 251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 6778888888888621 2334456778888888888865
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=1.4e-15 Score=151.52 Aligned_cols=245 Identities=14% Similarity=0.033 Sum_probs=164.9
Q ss_pred HHHHHHhhcCCCcceEeeCCCChhhhc-----cccCCCC-ccCeeeccCCcCccccchhhhcC-----CcCcEeecCCcC
Q 046626 310 SILTSCISKSQFLRVIDLSETAIEVLS-----REIGNLK-HLRYLDLSDNDKIKKLPNSICEL-----HSLQTLSLGGCR 378 (557)
Q Consensus 310 ~~~~~~~~~~~~L~~L~l~~~~~~~l~-----~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~ 378 (557)
...+..+...++|++|++++|.+...+ ..+..++ +|++|+|++|......+..+..+ ++|++|++++|.
T Consensus 12 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 12 NPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp CHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 345666777777999999999999665 5678888 89999999996444446667665 999999999998
Q ss_pred CCcccccccc----CC-CCCcEEEccccccccccc-C----cCC-CCCCCeeccccccccc----ccccceEec-ccCCC
Q 046626 379 ELEELPKDIR----YL-VSLRMFMVSTKQKSLLES-G----IGC-LSSLRFLMISDCENLE----YFSLETLML-KDCES 442 (557)
Q Consensus 379 ~~~~~p~~~~----~l-~~L~~L~l~~~~~~~~~~-~----~~~-l~~L~~L~l~~c~~l~----~l~~~~~~l-~~l~~ 442 (557)
.....+..+. .+ ++|++|++++|.+...+. . +.. .++|++|++++|..-. .++..+... .+++.
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 6655555443 34 899999999999885432 2 444 3699999999864321 222222223 37888
Q ss_pred ccccCcccccccc-ccccccCCC-CCcceEEEeCCCCCCC-----CChhhccCCCcccceEecccccccccCC----ccC
Q 046626 443 LNLNLNIEMEGEE-SHCDRNKTR-LHLRKLFVEGLPPLLE-----LPQWLLQGSTKTLKNLIIRNCPNFMALP----ESL 511 (557)
Q Consensus 443 l~l~~~~~~~~~~-~~~~~~~~~-~~L~~L~l~~~~~l~~-----lp~~~~~~~l~~L~~L~L~~c~~~~~lp----~~l 511 (557)
|+++.|....... .+....... .+|++|+++++. +.. ++..+. ...++|+.|+|++|......+ ..+
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFS-SIPNHVVSLNLCLNCLHGPSLENLKLLK 249 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHH-HSCTTCCEEECCSSCCCCCCHHHHHHTT
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHh-cCCCCceEEECcCCCCCcHHHHHHHHHH
Confidence 8888775432221 111122344 599999999864 443 555551 224699999999998655332 446
Q ss_pred CCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 512 RNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 512 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
..+++|+.|++++|. +..+...........+.++++|+.+|+++|
T Consensus 250 ~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 250 DSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred hcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 788999999999974 000000000011235668899999999987
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=7.1e-14 Score=129.38 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=94.1
Q ss_pred cceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccc-cccCCCCCcEEEccc
Q 046626 322 LRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVST 400 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~ 400 (557)
.+.++.+++.+..+|..+. ++|++|++++|......|..+..+++|++|++++|.. ..+|. .+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 4567777777777777654 6788888888764344466677888888888888764 45553 457788888888888
Q ss_pred ccccccccC-cCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCC
Q 046626 401 KQKSLLESG-IGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLL 479 (557)
Q Consensus 401 ~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 479 (557)
|.+..++.. ++.+++|++|++++| .+..+|..+ ..+++|++|+++++ .+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~---------------------------~~l~~L~~L~L~~N-~l~ 148 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGI---------------------------ERLTHLTHLALDQN-QLK 148 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTG---------------------------GGCTTCSEEECCSS-CCC
T ss_pred CcCCccChhHhCcchhhCeEeccCC-cccccCccc---------------------------ccCCCCCEEECCCC-cCC
Confidence 887765543 577788888887763 333333221 12334444444442 333
Q ss_pred CCChhhccCCCcccceEeccccccc
Q 046626 480 ELPQWLLQGSTKTLKNLIIRNCPNF 504 (557)
Q Consensus 480 ~lp~~~~~~~l~~L~~L~L~~c~~~ 504 (557)
.+|...+ ..+++|+.|+|++|+..
T Consensus 149 ~~~~~~~-~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 149 SIPHGAF-DRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCTTTT-TTCTTCCEEECTTSCBC
T ss_pred ccCHHHH-hCCCCCCEEEeeCCCcc
Confidence 4443221 55667777777776643
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=7.8e-14 Score=128.21 Aligned_cols=99 Identities=18% Similarity=0.301 Sum_probs=78.4
Q ss_pred ceEeeCCCChhhhccccCCCCccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccc
Q 046626 323 RVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTK 401 (557)
Q Consensus 323 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 401 (557)
+.++++++.++.+|..+. ++|+.|++++|. +..+|. .+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567888888888887665 578899998885 665554 6788888999999888766666788888888888888888
Q ss_pred cccccccC-cCCCCCCCeeccccc
Q 046626 402 QKSLLESG-IGCLSSLRFLMISDC 424 (557)
Q Consensus 402 ~~~~~~~~-~~~l~~L~~L~l~~c 424 (557)
.+..+|.. +..+++|++|++++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHhHccCCCCCCEEECCCC
Confidence 88876654 577888888888874
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=5.3e-14 Score=135.33 Aligned_cols=168 Identities=18% Similarity=0.235 Sum_probs=112.6
Q ss_pred cCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 318 KSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 318 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
.+++|+.|+++++.+..++ .+..+++|++|++++|. +..+|. +..+++|++|++++|. +..+| .++.+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 4566777788777777664 36777778888887774 666665 7777788888887766 44444 477777888888
Q ss_pred cccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCC
Q 046626 398 VSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPP 477 (557)
Q Consensus 398 l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 477 (557)
+++|.+..++ .++.+++|++|++++|. +..++ ....+++|++|+++++ .
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~----------------------------~l~~l~~L~~L~L~~N-~ 167 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT----------------------------VLSRLTKLDTLSLEDN-Q 167 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG----------------------------GGGGCTTCSEEECCSS-C
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch----------------------------hhccCCCCCEEEccCC-c
Confidence 8877777653 57777777777777642 22111 0134556777777765 3
Q ss_pred CCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 478 LLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 478 l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
+..++. + ..+++|+.|++++|.. +.+|. +..+++|+.|++++|+
T Consensus 168 l~~~~~-l--~~l~~L~~L~L~~N~i-~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 168 ISDIVP-L--AGLTKLQNLYLSKNHI-SDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCCGG-G--TTCTTCCEEECCSSCC-CBCGG-GTTCTTCSEEEEEEEE
T ss_pred cccchh-h--cCCCccCEEECCCCcC-CCChh-hccCCCCCEEECcCCc
Confidence 445554 4 6677788888877764 34554 7777788888877764
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=6e-14 Score=127.92 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=106.8
Q ss_pred CCcceEeeCCCChhhhccc-cCCCCccCeeeccCCcCccccchh-hhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 320 QFLRVIDLSETAIEVLSRE-IGNLKHLRYLDLSDNDKIKKLPNS-ICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
++|++|++++|.+..++.. +..+++|++|++++|. +..+|.. +..+++|++|++++|......+..++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4677777877777766554 5677777888887774 5555543 56777778888777764433333457777777777
Q ss_pred cccccccccccC-cCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCC
Q 046626 398 VSTKQKSLLESG-IGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLP 476 (557)
Q Consensus 398 l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 476 (557)
+++|.+..++.. ++.+++|++|++++| .+..++.. ....+++|++|++++++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~--------------------------~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDG--------------------------VFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT--------------------------TTTTCTTCCEEECCSCC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHH--------------------------HhccCCCccEEEecCCC
Confidence 777777755443 677777777777764 23322210 01345677788887753
Q ss_pred CCCCCChhhccCCCcccceEecccccccccCCccCCCCCC
Q 046626 477 PLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEA 516 (557)
Q Consensus 477 ~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~ 516 (557)
-. ..+++|+.|+++.|...+.+|.+++.++.
T Consensus 160 ~~---------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 160 WD---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp BC---------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ee---------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 22 56678888888888888888888877665
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=1.8e-16 Score=166.40 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=136.8
Q ss_pred hcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCc-------------CccccchhhhcCCcCcEee-cCCcCCCcc
Q 046626 317 SKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDND-------------KIKKLPNSICELHSLQTLS-LGGCRELEE 382 (557)
Q Consensus 317 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------~~~~lp~~~~~l~~L~~L~-l~~~~~~~~ 382 (557)
...++|+.|+|++|.+..+|.+++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.+. +..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 34678889999999999999999999999999987653 3456677788888888888 44432 222
Q ss_pred ccc------cccC--CCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccc
Q 046626 383 LPK------DIRY--LVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGE 454 (557)
Q Consensus 383 ~p~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~ 454 (557)
++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++| .+..+|..+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~-------------------- 482 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPAL-------------------- 482 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGG--------------------
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccchhh--------------------
Confidence 221 1111 1258888888888888776 888888888888874 444555433
Q ss_pred cccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccC-CccCCCCCCcceeeecCCCccccccC
Q 046626 455 ESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMAL-PESLRNLEALETLAIGGCPALSERCK 533 (557)
Q Consensus 455 ~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~l-p~~l~~l~~L~~L~l~~c~~l~~~~~ 533 (557)
..+++|+.|+++++ .+..+| .+ +.+++|+.|+|++|.+.+.. |..++.+++|+.|++++|+ +...+.
T Consensus 483 -------~~l~~L~~L~Ls~N-~l~~lp-~l--~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 483 -------AALRCLEVLQASDN-ALENVD-GV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp -------GGCTTCCEEECCSS-CCCCCG-GG--TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred -------hcCCCCCEEECCCC-CCCCCc-cc--CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 33456666666663 455677 56 78899999999999866554 8889999999999999964 221111
Q ss_pred CCCCCCCCcccccCceeeCCC
Q 046626 534 PQTGEDWPKIAHIPQVRIDDE 554 (557)
Q Consensus 534 ~~~~~~~~~~~~l~~l~~l~~ 554 (557)
.....+..+|+|+.||+
T Consensus 551 ----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 551 ----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp ----CTTHHHHHCTTCSEEEC
T ss_pred ----HHHHHHHHCcccCccCC
Confidence 11122345778877754
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=3.2e-14 Score=150.15 Aligned_cols=186 Identities=19% Similarity=0.198 Sum_probs=146.7
Q ss_pred cceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccc
Q 046626 322 LRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTK 401 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 401 (557)
+..+.+..+.+..++. +..+++|+.|++++|. +..+|. +..+++|+.|+|++|. +..+|. +..+++|+.|++++|
T Consensus 23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC
Confidence 4445666666664432 4678899999999985 888884 9999999999999987 445554 899999999999999
Q ss_pred cccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCC
Q 046626 402 QKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL 481 (557)
Q Consensus 402 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 481 (557)
.+..+| .++.+++|+.|+|++|. +..++ .+..+.+|+.|+++.|..... .....+++|+.|+|+++ .+..+
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N-~l~~~ 168 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDN-QISDI 168 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSS-CCCCC
T ss_pred CCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCC-cCCCc
Confidence 999876 79999999999999864 45553 355677888888887754322 23467889999999987 45556
Q ss_pred ChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 482 PQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 482 p~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
+. + ..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|+
T Consensus 169 ~~-l--~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 169 VP-L--AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GG-G--TTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECCSEE
T ss_pred hh-h--ccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEccCCc
Confidence 55 5 78999999999999754 455 48999999999999975
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=126.79 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=75.2
Q ss_pred ceEeeCCCChhhhccccCCCCccCeeeccCCcCccccc--hhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccc
Q 046626 323 RVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLP--NSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVST 400 (557)
Q Consensus 323 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 400 (557)
+.++++++.++.+|..+.. .+++|++++|. +..++ ..+..+++|++|++++|......|..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5788888888888876643 56889999885 66653 3378888899999988875544455788888888888888
Q ss_pred ccccccc-cCcCCCCCCCeeccccc
Q 046626 401 KQKSLLE-SGIGCLSSLRFLMISDC 424 (557)
Q Consensus 401 ~~~~~~~-~~~~~l~~L~~L~l~~c 424 (557)
|.+..++ ..++.+++|++|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred CccCccCHhHhcCCcCCCEEECCCC
Confidence 8888554 44788888888888874
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=1.2e-14 Score=137.59 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=51.9
Q ss_pred hcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEE
Q 046626 317 SKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMF 396 (557)
Q Consensus 317 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 396 (557)
..+++|++|++++|.+..++ .+..+++|++|++++|. +..+|. +..+++|++|++++|. +..+|.... ++|++|
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEE
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEE
Confidence 34455555555555555544 45555555555555553 444444 5555555555555554 333443222 555555
Q ss_pred EcccccccccccCcCCCCCCCeecccc
Q 046626 397 MVSTKQKSLLESGIGCLSSLRFLMISD 423 (557)
Q Consensus 397 ~l~~~~~~~~~~~~~~l~~L~~L~l~~ 423 (557)
++++|.+..++ .++.+++|++|++++
T Consensus 112 ~L~~N~l~~~~-~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 112 FLDNNELRDTD-SLIHLKNLEILSIRN 137 (263)
T ss_dssp ECCSSCCSBSG-GGTTCTTCCEEECTT
T ss_pred EccCCccCCCh-hhcCcccccEEECCC
Confidence 55555555443 355555555555554
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=7.9e-15 Score=158.74 Aligned_cols=120 Identities=25% Similarity=0.308 Sum_probs=102.3
Q ss_pred HHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccC
Q 046626 310 SILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRY 389 (557)
Q Consensus 310 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 389 (557)
...+..+..+..|++|+|++|.+..+|..+..+++|++|+|++|. +..+|..|+.|++|++|+|++|.. ..+|..++.
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~ 291 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGS 291 (727)
T ss_dssp --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGG
T ss_pred ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcC-CccChhhcC
Confidence 356777889999999999999999999999999999999999995 779999999999999999999884 489999999
Q ss_pred CCCCcEEEcccccccccccCcCCCCCCCeecccccccccccc
Q 046626 390 LVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFS 431 (557)
Q Consensus 390 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 431 (557)
+++|++|++++|.+..+|..|+.|++|++|+|++|.....+|
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 999999999999999999999999999999999976544444
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=2.5e-14 Score=149.24 Aligned_cols=196 Identities=19% Similarity=0.213 Sum_probs=112.5
Q ss_pred ceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCee
Q 046626 269 RVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYL 348 (557)
Q Consensus 269 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L 348 (557)
.++.+.+.++.+.. ++..+ +++|+.|.+..+.... +| ..+++|++|++++|.++.+|. +.+ +|++|
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~l--~~~L~~L~Ls~N~l~~----ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDNL--PPQITVLEITQNALIS----LP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC--CCSCC--CTTCSEEECCSSCCSC----CC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred CccEEEeCCCCCCc--cCHhH--cCCCCEEECcCCCCcc----cc---cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence 45556665555443 22222 2556666665554431 11 234566666666666665555 443 56666
Q ss_pred eccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeeccccccccc
Q 046626 349 DLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLE 428 (557)
Q Consensus 349 ~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 428 (557)
++++|. +..+|. .+++|++|++++|. +..+|. .+++|++|++++|.+..+|. ++ ++|+.|++++| .+.
T Consensus 126 ~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 126 DVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLE 193 (571)
T ss_dssp ECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCS
T ss_pred ECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCC
Confidence 666653 445555 45666666666655 333554 45566666666666665555 44 56666666653 333
Q ss_pred ccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCC
Q 046626 429 YFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALP 508 (557)
Q Consensus 429 ~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp 508 (557)
.+|. +.. + | ....+.|+.|+++++ .+..+|.++ ..+++|+.|+|++|+..+.+|
T Consensus 194 ~lp~-~~~--~---L-----------------~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 194 SLPA-VPV--R---N-----------------HHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SCCC-CC------------------------------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCHHHH
T ss_pred chhh-HHH--h---h-----------------hcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCCcCH
Confidence 4432 110 0 0 022234589999885 667899988 569999999999999888888
Q ss_pred ccCCCCCC
Q 046626 509 ESLRNLEA 516 (557)
Q Consensus 509 ~~l~~l~~ 516 (557)
..++.++.
T Consensus 248 ~~l~~l~~ 255 (571)
T 3cvr_A 248 ESLSQQTA 255 (571)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77666543
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=3.4e-13 Score=121.73 Aligned_cols=148 Identities=12% Similarity=0.133 Sum_probs=119.8
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhh-hccccCCCCccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEV-LSREIGNLKHLR 346 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~l~~L~ 346 (557)
..++.+.+.++.+... + .+..+++|++|.+..+..... ..+.++++|++|++++|.+.. .|..++.+++|+
T Consensus 44 ~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANINVTDL--T-GIEYAHNIKDLTINNIHATNY-----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HTCCEEEEESSCCSCC--T-TGGGCTTCSEEEEESCCCSCC-----GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred CCccEEeccCCCccCh--H-HHhcCCCCCEEEccCCCCCcc-----hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 4577888888777643 3 577889999999987744321 247788999999999999884 678889999999
Q ss_pred eeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccc
Q 046626 347 YLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 347 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~ 425 (557)
+|++++|......|..++.+++|++|++++|..+..+| .+..+++|++|++++|.+..++ .+..+++|++|+++++.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 99999987555678889999999999999987677777 6888999999999999988776 78889999999998753
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=3.6e-13 Score=123.74 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=116.3
Q ss_pred CeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccccc-ccCcCCCCCCCeeccccc
Q 046626 346 RYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLL-ESGIGCLSSLRFLMISDC 424 (557)
Q Consensus 346 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~c 424 (557)
+.++.+++. +..+|..+. ++|++|++++|......|..+..+++|+.|++++|.+..+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 678888874 888997654 7899999999885555555889999999999999999855 788999999999999985
Q ss_pred ccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCC-ChhhccCCCcccceEecccccc
Q 046626 425 ENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL-PQWLLQGSTKTLKNLIIRNCPN 503 (557)
Q Consensus 425 ~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~~~~~~l~~L~~L~L~~c~~ 503 (557)
.+..+|... ...+++|++|+++++ .+..+ |..+ ..+++|+.|+|++|.+
T Consensus 91 -~l~~l~~~~--------------------------f~~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 91 -KITELPKSL--------------------------FEGLFSLQLLLLNAN-KINCLRVDAF--QDLHNLNLLSLYDNKL 140 (220)
T ss_dssp -CCCCCCTTT--------------------------TTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSSCC
T ss_pred -cCCccCHhH--------------------------ccCCCCCCEEECCCC-CCCEeCHHHc--CCCCCCCEEECCCCcC
Confidence 444443210 134567888888875 34455 4556 7889999999999987
Q ss_pred cccCCccCCCCCCcceeeecCCC
Q 046626 504 FMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 504 ~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
.+..+..+..+++|+.|++++|+
T Consensus 141 ~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 141 QTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEECHHHHhCCCCCCEEEeCCCC
Confidence 76666679999999999999975
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.47 E-value=4.7e-15 Score=158.08 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=87.7
Q ss_pred eEEEEeecCC-CCcccccccccCCCCCcEEEecCCCccc-hhHHHHHHhhcCCCcceEeeCCCChh-----hhccccCCC
Q 046626 270 VCHLSFVGAN-TSRNDFSSLLSDLRRARTILFPINDEKT-NQSILTSCISKSQFLRVIDLSETAIE-----VLSREIGNL 342 (557)
Q Consensus 270 ~~~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~l 342 (557)
++.+.+..+. .....+......+++|++|.+..+.... ....++..+.+++.|+.|+++++.+. .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 5556655443 1111223333466777777776554321 12234455566777777777776664 344445566
Q ss_pred CccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCC---ccccccccCCCCCcEEEcccccccccccCcCCCCCCCee
Q 046626 343 KHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCREL---EELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFL 419 (557)
Q Consensus 343 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~---~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 419 (557)
++|+.|++++|. +..+|..+..+++|+.|+++++... ...+..+..+++|+.+.++.+....+|..+..+++|++|
T Consensus 220 ~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 777777777764 5566766777777777777643222 233344555566666666554444555555556666666
Q ss_pred cccccc
Q 046626 420 MISDCE 425 (557)
Q Consensus 420 ~l~~c~ 425 (557)
++++|.
T Consensus 299 ~Ls~~~ 304 (592)
T 3ogk_B 299 DLLYAL 304 (592)
T ss_dssp EETTCC
T ss_pred ecCCCc
Confidence 666554
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=1.4e-13 Score=136.73 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=43.4
Q ss_pred cceEeeCCCChhhhccc-cC-CCCccCeeeccCCcCccccc-hhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEc
Q 046626 322 LRVIDLSETAIEVLSRE-IG-NLKHLRYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMV 398 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~-~~-~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 398 (557)
+++|+|++|.++.++.. +. .+++|++|+|++|. +..+| ..|..+++|++|++++|......+..+..+++|++|++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 44444444444444332 22 44444444444443 33332 23444444444444444422222223444444444444
Q ss_pred cccccccc-ccCcCCCCCCCeecccc
Q 046626 399 STKQKSLL-ESGIGCLSSLRFLMISD 423 (557)
Q Consensus 399 ~~~~~~~~-~~~~~~l~~L~~L~l~~ 423 (557)
++|.+..+ |..+..+++|++|+|++
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCcccEECHHHhCCcccCCEEECCC
Confidence 44444422 33444444444444444
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=6.7e-15 Score=156.84 Aligned_cols=278 Identities=12% Similarity=0.006 Sum_probs=147.8
Q ss_pred CceEEEEeecCCCCccc---ccccccCCCCCcEEEecCCCcc-chhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCC
Q 046626 268 KRVCHLSFVGANTSRND---FSSLLSDLRRARTILFPINDEK-TNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLK 343 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~ 343 (557)
+.++.+.+..+.+.... +...+..++.|++|.+..+... .....++..+.++++|+.|+++++.+..+|..+..++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~ 243 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence 45677777666543322 3345567888888888766554 3345667777788889999998888877777777777
Q ss_pred ccCeeeccCCcC--------------------------ccccchhhhcCCcCcEeecCCcCCCcc-ccccccCCCCCcEE
Q 046626 344 HLRYLDLSDNDK--------------------------IKKLPNSICELHSLQTLSLGGCRELEE-LPKDIRYLVSLRMF 396 (557)
Q Consensus 344 ~L~~L~l~~~~~--------------------------~~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L 396 (557)
+|+.|+++++.. ...+|..+..+++|++|++++|..... ++..+..+++|++|
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 777777764321 223344444445555555555442111 11223445555555
Q ss_pred Eccccccc-ccccCcCCCCCCCeecccc----------cccccccccc--eEecccCCCccccCccccccccccccccCC
Q 046626 397 MVSTKQKS-LLESGIGCLSSLRFLMISD----------CENLEYFSLE--TLMLKDCESLNLNLNIEMEGEESHCDRNKT 463 (557)
Q Consensus 397 ~l~~~~~~-~~~~~~~~l~~L~~L~l~~----------c~~l~~l~~~--~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~ 463 (557)
+++++... .++.....+++|++|++++ |+.+...... ...+.+++.|++..+.... .........
T Consensus 324 ~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~--~~~~~l~~~ 401 (592)
T 3ogk_B 324 ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN--ESLESIGTY 401 (592)
T ss_dssp EEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH--HHHHHHHHH
T ss_pred eccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH--HHHHHHHhh
Confidence 55422111 1222223445555555553 4443322111 1123455555543222110 000000112
Q ss_pred CCCcceEEEeC---CCCCCCCCh------hhccCCCcccceEecccccc--cccCCccC-CCCCCcceeeecCCCccccc
Q 046626 464 RLHLRKLFVEG---LPPLLELPQ------WLLQGSTKTLKNLIIRNCPN--FMALPESL-RNLEALETLAIGGCPALSER 531 (557)
Q Consensus 464 ~~~L~~L~l~~---~~~l~~lp~------~~~~~~l~~L~~L~L~~c~~--~~~lp~~l-~~l~~L~~L~l~~c~~l~~~ 531 (557)
+++|++|++++ ++.+...|. .+ ..+++|++|++++|.. ....+..+ ..+++|++|++++|.
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~--~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~----- 474 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLL--IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG----- 474 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHH--HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-----
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHH--HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-----
Confidence 56788888874 445554332 23 4577888888876552 22222222 237788888888863
Q ss_pred cCCCCCCC-CCcccccCceeeCCCCCC
Q 046626 532 CKPQTGED-WPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 532 ~~~~~~~~-~~~~~~l~~l~~l~~~~n 557 (557)
..+.. ...+.++++|+.|++++|
T Consensus 475 ---l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 475 ---ESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp ---SSHHHHHHHHTCCTTCCEEEEESC
T ss_pred ---CCHHHHHHHHhcCcccCeeeccCC
Confidence 21111 123467889999988876
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=3e-13 Score=127.90 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=50.9
Q ss_pred cceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccc
Q 046626 322 LRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTK 401 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 401 (557)
+..++++++.+..++ .+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC
Confidence 444555555555444 34555556666665553 55555 35555566666665554 333443 555556666666665
Q ss_pred cccccccCcCCCCCCCeeccccc
Q 046626 402 QKSLLESGIGCLSSLRFLMISDC 424 (557)
Q Consensus 402 ~~~~~~~~~~~l~~L~~L~l~~c 424 (557)
.+..+|.... ++|++|++++|
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N 116 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNN 116 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSS
T ss_pred ccCCcCcccc--CcccEEEccCC
Confidence 5555443222 55555555553
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=2.2e-13 Score=124.14 Aligned_cols=131 Identities=21% Similarity=0.278 Sum_probs=107.8
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccc-cCCCCccCeeeccCCcCccccchh-hhcCCcC
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSRE-IGNLKHLRYLDLSDNDKIKKLPNS-ICELHSL 369 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L 369 (557)
.++++.|.+..+... ...+..+.++++|++|++++|.+..+|.. +..+++|++|++++|. +..+|.. +..+++|
T Consensus 27 ~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK---SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCC---CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccC---cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCC
Confidence 468999999877654 33445578899999999999999988765 6899999999999996 6666654 6899999
Q ss_pred cEeecCCcCCCccccccccCCCCCcEEEcccccccccccC-cCCCCCCCeeccccccc
Q 046626 370 QTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESG-IGCLSSLRFLMISDCEN 426 (557)
Q Consensus 370 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~ 426 (557)
++|++++|......+..+..+++|++|++++|.+..++.. ++.+++|++|++++|+.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 9999999875544444578999999999999999866654 78899999999998743
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1.4e-12 Score=120.69 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=120.7
Q ss_pred cCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccccccc-CcCCCCCCCeecccc
Q 046626 345 LRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLES-GIGCLSSLRFLMISD 423 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~ 423 (557)
-+.++.+++ .+..+|..+. ++|++|++++|......|..+..+++|++|++++|.+..+|. .++.+++|++|++++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 567888877 4889997653 899999999998777778889999999999999999997764 468999999999998
Q ss_pred cccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccc
Q 046626 424 CENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPN 503 (557)
Q Consensus 424 c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~ 503 (557)
| .+..++.. ....+++|++|+++++ .+..+|..+ ..+++|+.|+|++|..
T Consensus 98 N-~l~~l~~~--------------------------~~~~l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 98 N-QLTVLPSA--------------------------VFDRLVHLKELFMCCN-KLTELPRGI--ERLTHLTHLALDQNQL 147 (229)
T ss_dssp S-CCCCCCTT--------------------------TTTTCTTCCEEECCSS-CCCSCCTTG--GGCTTCSEEECCSSCC
T ss_pred C-cCCccChh--------------------------HhCcchhhCeEeccCC-cccccCccc--ccCCCCCEEECCCCcC
Confidence 5 44443321 0135678888888874 567899888 8899999999999986
Q ss_pred cccCCccCCCCCCcceeeecCCC
Q 046626 504 FMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 504 ~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
....+..+..+++|+.|++++|+
T Consensus 148 ~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 148 KSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC
T ss_pred CccCHHHHhCCCCCCEEEeeCCC
Confidence 65555678999999999999965
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=1.7e-14 Score=151.27 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=141.5
Q ss_pred cCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCC--------------hhhhccccCCCCccCeee-ccCCc
Q 046626 290 SDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETA--------------IEVLSREIGNLKHLRYLD-LSDND 354 (557)
Q Consensus 290 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------~~~l~~~~~~l~~L~~L~-l~~~~ 354 (557)
..+++++.|.+..+ ....+|..+..+++|+.|+++++. ....|..++.+++|+.|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n----~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n- 420 (567)
T 1dce_A 346 ATDEQLFRCELSVE----KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA- 420 (567)
T ss_dssp STTTTSSSCCCCHH----HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-
T ss_pred ccCccceeccCChh----hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-
Confidence 34566666666533 345678889999999999997763 224566778888999998 5554
Q ss_pred Cccccch------hhhc--CCcCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeeccccccc
Q 046626 355 KIKKLPN------SICE--LHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCEN 426 (557)
Q Consensus 355 ~~~~lp~------~~~~--l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 426 (557)
.+..++. .+.. ...|++|++++|. +..+|. ++.+++|+.|++++|.+..+|..++.+++|++|++++| .
T Consensus 421 ~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~ 497 (567)
T 1dce_A 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-A 497 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-C
T ss_pred ccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-C
Confidence 2333332 1221 2369999999986 566886 99999999999999999999999999999999999985 4
Q ss_pred ccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCC--ChhhccCCCcccceEeccccccc
Q 046626 427 LEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL--PQWLLQGSTKTLKNLIIRNCPNF 504 (557)
Q Consensus 427 l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--p~~~~~~~l~~L~~L~L~~c~~~ 504 (557)
+..+| .+ ..+++|++|+++++ .+..+ |..+ +.+++|+.|+|++|+..
T Consensus 498 l~~lp-~l---------------------------~~l~~L~~L~Ls~N-~l~~~~~p~~l--~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 498 LENVD-GV---------------------------ANLPRLQELLLCNN-RLQQSAAIQPL--VSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCCCG-GG---------------------------TTCSSCCEEECCSS-CCCSSSTTGGG--GGCTTCCEEECTTSGGG
T ss_pred CCCCc-cc---------------------------CCCCCCcEEECCCC-CCCCCCCcHHH--hcCCCCCEEEecCCcCC
Confidence 44343 11 34567778888775 45566 7888 88999999999999865
Q ss_pred ccCCccCC----CCCCcceeee
Q 046626 505 MALPESLR----NLEALETLAI 522 (557)
Q Consensus 505 ~~lp~~l~----~l~~L~~L~l 522 (557)
+ +|+.+. .+|+|+.|++
T Consensus 547 ~-~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 547 Q-EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp G-SSSCTTHHHHHCTTCSEEEC
T ss_pred C-CccHHHHHHHHCcccCccCC
Confidence 5 444343 3788988864
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=119.36 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=115.2
Q ss_pred cCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccc-cccCCCCCcEEEcccccccccc-cCcCCCCCCCeeccc
Q 046626 345 LRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVSTKQKSLLE-SGIGCLSSLRFLMIS 422 (557)
Q Consensus 345 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~ 422 (557)
-+.++++++. +..+|..+ ...+++|++++|......|. .+..+++|++|++++|.+..++ ..++.+++|++|+++
T Consensus 13 ~~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQK-LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSC-CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCC-cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 4689999885 88899765 35679999999875444343 4789999999999999999665 479999999999999
Q ss_pred ccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCC-ChhhccCCCcccceEecccc
Q 046626 423 DCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL-PQWLLQGSTKTLKNLIIRNC 501 (557)
Q Consensus 423 ~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-p~~~~~~~l~~L~~L~L~~c 501 (557)
+|. +..++.. ....+++|++|+++++ .+..+ |..+ ..+++|+.|+|++|
T Consensus 90 ~N~-l~~~~~~--------------------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~N 139 (220)
T 2v70_A 90 SNR-LENVQHK--------------------------MFKGLESLKTLMLRSN-RITCVGNDSF--IGLSSVRLLSLYDN 139 (220)
T ss_dssp SSC-CCCCCGG--------------------------GGTTCSSCCEEECTTS-CCCCBCTTSS--TTCTTCSEEECTTS
T ss_pred CCc-cCccCHh--------------------------HhcCCcCCCEEECCCC-cCCeECHhHc--CCCccCCEEECCCC
Confidence 853 3433221 1134567788888775 34454 5566 78899999999999
Q ss_pred cccccCCccCCCCCCcceeeecCCC
Q 046626 502 PNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 502 ~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
.+.+..|..+..+++|+.|++++|+
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 140 QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCCEECHHHhcCCCCCCEEEecCcC
Confidence 9877778899999999999999975
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=5.9e-13 Score=116.82 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=51.3
Q ss_pred CCcceEeeCCCChh--hhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 320 QFLRVIDLSETAIE--VLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 320 ~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
+.|++|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555555 455555555555555555553 4444 3355555555555555543333444444455555555
Q ss_pred cccccccccc--cCcCCCCCCCeecccc
Q 046626 398 VSTKQKSLLE--SGIGCLSSLRFLMISD 423 (557)
Q Consensus 398 l~~~~~~~~~--~~~~~l~~L~~L~l~~ 423 (557)
+++|.+..+| ..++.+++|++|++++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence 5555544433 3444444444444444
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=2.2e-13 Score=147.36 Aligned_cols=198 Identities=20% Similarity=0.160 Sum_probs=108.8
Q ss_pred cceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEcccc
Q 046626 322 LRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTK 401 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 401 (557)
+..+++..+.+...+..+..+++|+.|+|++|. +..+|..+..+++|++|+|++|.. ..+|..++.+++|++|++++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCC
Confidence 334455556666667789999999999999986 779999999999999999999874 499999999999999999999
Q ss_pred cccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCC
Q 046626 402 QKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLEL 481 (557)
Q Consensus 402 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 481 (557)
.+..+|..++.|++|++|+|++| .+..+|..+. .+.+|++|+|+++.-...+
T Consensus 281 ~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~---------------------------~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 281 RLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFG---------------------------NLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTT---------------------------SCTTCCCEECTTSCCCSHH
T ss_pred cCCccChhhcCCCCCCEEECCCC-CCCccChhhh---------------------------cCCCccEEeCCCCccCCCC
Confidence 99999999999999999999985 5566664433 3445666666665433345
Q ss_pred ChhhccCCC-cccceEecccccccccCCccCCCCCCcceeeecCCCccccccCCCCCCCCCcccccCceeeCCCCCC
Q 046626 482 PQWLLQGST-KTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCPALSERCKPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 482 p~~~~~~~l-~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
|..+ ..+ ..+..|+|++|...+.+|. .|+.|+++.+..+......+.+.....+..+.++....++.|
T Consensus 333 p~~~--~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N 401 (727)
T 4b8c_D 333 LKIL--TEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN 401 (727)
T ss_dssp HHHH--HHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------
T ss_pred hHHH--hhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence 5555 221 2233578999988777765 455666766533322223333334444555666666666655
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=1.1e-12 Score=115.19 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=104.7
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcE
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQT 371 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 371 (557)
.++++.|.+..+... ...+|..+.++++|++|++++|.+..+ ..+..+++|++|++++|.....+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~--~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCB--TTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCC--hhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356677777655432 012334467788999999999999877 78899999999999999744448888888999999
Q ss_pred eecCCcCCCcccc--ccccCCCCCcEEEccccccccccc----CcCCCCCCCeeccccccc
Q 046626 372 LSLGGCRELEELP--KDIRYLVSLRMFMVSTKQKSLLES----GIGCLSSLRFLMISDCEN 426 (557)
Q Consensus 372 L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~c~~ 426 (557)
|++++|. +..+| ..++.+++|++|++++|.+..+|. .+..+++|++|++++|..
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999986 55655 688999999999999999997776 789999999999998653
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=1.2e-12 Score=112.30 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=57.7
Q ss_pred hhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCcccc--ccccCCCCC
Q 046626 316 ISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELP--KDIRYLVSL 393 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L 393 (557)
+..+++|++|++++|.+..+ ..++.+++|++|++++|.....+|..++.+++|++|++++|. +..+| ..++.+++|
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCC
Confidence 44555566666666655554 455556666666666654222255555556666666666655 23322 455566666
Q ss_pred cEEEccccccccccc----CcCCCCCCCeeccc
Q 046626 394 RMFMVSTKQKSLLES----GIGCLSSLRFLMIS 422 (557)
Q Consensus 394 ~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~ 422 (557)
++|++++|.+...|. .++.+++|+.|+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666665554443 45555666666554
No 125
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=1.8e-13 Score=145.75 Aligned_cols=212 Identities=15% Similarity=0.061 Sum_probs=97.3
Q ss_pred ceEEEEeecCCCCcc---cccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCC-ChhhhccccCCCCc
Q 046626 269 RVCHLSFVGANTSRN---DFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSET-AIEVLSREIGNLKH 344 (557)
Q Consensus 269 ~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~l~~ 344 (557)
.++.+.+.++.+... .+......+++|++|.+..+........+.....++++|++|+++++ .+..+|..+..+++
T Consensus 157 ~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 236 (594)
T 2p1m_B 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236 (594)
T ss_dssp TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTT
T ss_pred CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCc
Confidence 455555554432221 12233345666777766654422223344444555667777777665 44455555555666
Q ss_pred cCeeeccCCc------------------------------CccccchhhhcCCcCcEeecCCcCCCcc-ccccccCCCCC
Q 046626 345 LRYLDLSDND------------------------------KIKKLPNSICELHSLQTLSLGGCRELEE-LPKDIRYLVSL 393 (557)
Q Consensus 345 L~~L~l~~~~------------------------------~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L 393 (557)
|+.|++.++. ....+|..+..+++|++|++++|..... ++..+..+++|
T Consensus 237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L 316 (594)
T 2p1m_B 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316 (594)
T ss_dssp CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTC
T ss_pred ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCc
Confidence 6666544331 1122333334455666666666552211 12223455666
Q ss_pred cEEEccccccc-ccccCcCCCCCCCeecccc--------cccccccccce--EecccCCCccccCccccccccccccccC
Q 046626 394 RMFMVSTKQKS-LLESGIGCLSSLRFLMISD--------CENLEYFSLET--LMLKDCESLNLNLNIEMEGEESHCDRNK 462 (557)
Q Consensus 394 ~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~--------c~~l~~l~~~~--~~l~~l~~l~l~~~~~~~~~~~~~~~~~ 462 (557)
+.|++++|... .++.....+++|++|++++ |+.+....... ..+.+++.|.+..+.... ........
T Consensus 317 ~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~--~~~~~l~~ 394 (594)
T 2p1m_B 317 QRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN--AALITIAR 394 (594)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH--HHHHHHHH
T ss_pred CEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH--HHHHHHHh
Confidence 66666655111 1111122355666666632 22222111110 013444444333222110 00000112
Q ss_pred CCCCcceEEEe-----CCCCCCCCC
Q 046626 463 TRLHLRKLFVE-----GLPPLLELP 482 (557)
Q Consensus 463 ~~~~L~~L~l~-----~~~~l~~lp 482 (557)
.+++|++|+++ +|..+...|
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred hCCCcceeEeecccCCCcccccCCc
Confidence 46789999999 566666444
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.31 E-value=4.5e-12 Score=125.88 Aligned_cols=134 Identities=20% Similarity=0.239 Sum_probs=98.9
Q ss_pred CCCcEEEecCCCccchhHHHHHHhh-cCCCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccch-hhhcCCcC
Q 046626 293 RRARTILFPINDEKTNQSILTSCIS-KSQFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLPN-SICELHSL 369 (557)
Q Consensus 293 ~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L 369 (557)
..++.|.+..+... ...+..+. ++++|++|+|++|.+..+++ .+..+++|++|+|++|. +..+|. .|..+++|
T Consensus 39 ~~l~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNNLS---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSCCC---EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCCCC---ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence 45778888766654 22333455 78888888888888887764 58888888888888885 565554 57788888
Q ss_pred cEeecCCcCCCccccccccCCCCCcEEEcccccccccccCc----CCCCCCCeecccccccccccc
Q 046626 370 QTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGI----GCLSSLRFLMISDCENLEYFS 431 (557)
Q Consensus 370 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~----~~l~~L~~L~l~~c~~l~~l~ 431 (557)
++|++++|......|..+..+++|++|++++|.+..+|..+ +.+++|+.|++++| .+..+|
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 88888888866666778888888888888888888776654 56888888888874 455554
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=1.1e-12 Score=112.52 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=96.6
Q ss_pred cCCCcceEeeCCCChh--hhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcE
Q 046626 318 KSQFLRVIDLSETAIE--VLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRM 395 (557)
Q Consensus 318 ~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 395 (557)
..++|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..++.+++|++|++++|.....+|..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467999999999998 889888999999999999995 7776 56899999999999999876668888888999999
Q ss_pred EEcccccccccc--cCcCCCCCCCeecccccccccccc
Q 046626 396 FMVSTKQKSLLE--SGIGCLSSLRFLMISDCENLEYFS 431 (557)
Q Consensus 396 L~l~~~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~l~ 431 (557)
|++++|.+..++ ..++.+++|++|++++| .+..++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 129 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLN 129 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGST
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchH
Confidence 999999998754 78999999999999986 444444
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=3.5e-12 Score=112.76 Aligned_cols=131 Identities=19% Similarity=0.169 Sum_probs=99.3
Q ss_pred ccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhh-hcCC
Q 046626 289 LSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSI-CELH 367 (557)
Q Consensus 289 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~ 367 (557)
+.++.+++.|.+..+..... +......++|++|++++|.+..+ +.++.+++|++|++++|. +..+|..+ ..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i----~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI----ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC----CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCchh----HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCC
Confidence 45677778888876655421 22222234889999999988877 678888899999999885 67777554 8889
Q ss_pred cCcEeecCCcCCCccccc--cccCCCCCcEEEcccccccccccC----cCCCCCCCeeccccccc
Q 046626 368 SLQTLSLGGCRELEELPK--DIRYLVSLRMFMVSTKQKSLLESG----IGCLSSLRFLMISDCEN 426 (557)
Q Consensus 368 ~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~~c~~ 426 (557)
+|++|++++|. +..+|. .++.+++|++|++++|.+..+|.. ++.+++|++|+++++..
T Consensus 89 ~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999998876 466776 788888999999999988877764 78888899998887643
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.27 E-value=7.6e-14 Score=148.73 Aligned_cols=281 Identities=15% Similarity=0.069 Sum_probs=159.3
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhh-----hccccCCC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEV-----LSREIGNL 342 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~l 342 (557)
..++.+.+.++.+....+......+++|++|.+..+. ......++....++++|++|++++|.+.. ++.....+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE-GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE-EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC-CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4677888887776655443333468899999998653 22233466667789999999999988652 33344577
Q ss_pred CccCeeeccCCc-Cc--cccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccc-------ccccccCcC-
Q 046626 343 KHLRYLDLSDND-KI--KKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQ-------KSLLESGIG- 411 (557)
Q Consensus 343 ~~L~~L~l~~~~-~~--~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-------~~~~~~~~~- 411 (557)
++|+.|++++|. .+ ..++..+..+++|++|++++|.....+|..+..+++|++|.++.+. +..++..++
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 899999999884 11 2233334567999999999986666788788888888888865432 112222233
Q ss_pred -----------------------CCCCCCeecccccccccccccc--eEecccCCCccccCccccccccccccccCCCCC
Q 046626 412 -----------------------CLSSLRFLMISDCENLEYFSLE--TLMLKDCESLNLNLNIEMEGEESHCDRNKTRLH 466 (557)
Q Consensus 412 -----------------------~l~~L~~L~l~~c~~l~~l~~~--~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~ 466 (557)
.+++|++|++++|. +..-... ...+.+++.|.++.+.. ..........+++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~---~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIE---DAGLEVLASTCKD 339 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGH---HHHHHHHHHHCTT
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccC---HHHHHHHHHhCCC
Confidence 34556666666554 2221100 11234455555443311 1111111123566
Q ss_pred cceEEEeCC--------CCCCCC-ChhhccCCCcccceEecccccccccCCccCC-CCCCcceeeec-----CCCccccc
Q 046626 467 LRKLFVEGL--------PPLLEL-PQWLLQGSTKTLKNLIIRNCPNFMALPESLR-NLEALETLAIG-----GCPALSER 531 (557)
Q Consensus 467 L~~L~l~~~--------~~l~~l-p~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~-~l~~L~~L~l~-----~c~~l~~~ 531 (557)
|++|++.+| ..+... ...+ ...+++|+.|.+.++......+..+. .+++|+.|+++ +|..+...
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHH-HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHH-HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 777777443 222110 0011 02367777776665554333333333 47888888888 45433221
Q ss_pred cCCCCCCCCCcccccCceeeCCCCC
Q 046626 532 CKPQTGEDWPKIAHIPQVRIDDESD 556 (557)
Q Consensus 532 ~~~~~~~~~~~~~~l~~l~~l~~~~ 556 (557)
+.. ......+.++++|+.+++++
T Consensus 419 ~~~--~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 419 PLD--IGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CTH--HHHHHHHHHCTTCCEEECCS
T ss_pred chh--hHHHHHHhhCCCccEEeecC
Confidence 100 00011256788999988865
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.3e-11 Score=110.63 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=50.0
Q ss_pred ceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchh--hhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccc
Q 046626 323 RVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNS--ICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVST 400 (557)
Q Consensus 323 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 400 (557)
++++++++.++.+|..+.. +|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4455555555555544432 55555555553 4444432 45555555555555554444445555555555555555
Q ss_pred ccccccc-cCcCCCCCCCeeccccc
Q 046626 401 KQKSLLE-SGIGCLSSLRFLMISDC 424 (557)
Q Consensus 401 ~~~~~~~-~~~~~l~~L~~L~l~~c 424 (557)
|.+..++ ..++.+++|++|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC
Confidence 5555332 23555555555555553
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=109.64 Aligned_cols=105 Identities=28% Similarity=0.347 Sum_probs=76.2
Q ss_pred CCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccc-hhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEc
Q 046626 320 QFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMV 398 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 398 (557)
++|++|++++|.++.+|..+..+++|++|++++|. +..++ ..|..+++|++|++++|......|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 45777888888877777777778888888888775 44444 45777888888888877755545556777888888888
Q ss_pred cccccccccc-CcCCCCCCCeecccccc
Q 046626 399 STKQKSLLES-GIGCLSSLRFLMISDCE 425 (557)
Q Consensus 399 ~~~~~~~~~~-~~~~l~~L~~L~l~~c~ 425 (557)
++|.+..+|. .+..+++|+.|++++++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 8887776654 46777788888777643
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=1.4e-11 Score=110.48 Aligned_cols=106 Identities=24% Similarity=0.239 Sum_probs=92.0
Q ss_pred CcceEeeCCCChhhhccc--cCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEc
Q 046626 321 FLRVIDLSETAIEVLSRE--IGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMV 398 (557)
Q Consensus 321 ~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 398 (557)
.|++|++++|.+..++.. ++.+++|++|+|++|......|..+..+++|++|++++|......|..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 789999999999988764 889999999999999744445788999999999999999866666667899999999999
Q ss_pred cccccc-ccccCcCCCCCCCeeccccccc
Q 046626 399 STKQKS-LLESGIGCLSSLRFLMISDCEN 426 (557)
Q Consensus 399 ~~~~~~-~~~~~~~~l~~L~~L~l~~c~~ 426 (557)
++|.+. ..|..++.+++|++|++++|+-
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 999998 4578899999999999998653
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=3e-11 Score=108.25 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=97.5
Q ss_pred ceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccc
Q 046626 323 RVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQ 402 (557)
Q Consensus 323 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 402 (557)
++++++++.++.+|..+. ++|++|++++|. +..+|..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 678999999999998764 589999999985 88999999999999999999998665556679999999999999999
Q ss_pred ccccc-cCcCCCCCCCeecccccccccccccc-eEecccCCCccccCc
Q 046626 403 KSLLE-SGIGCLSSLRFLMISDCENLEYFSLE-TLMLKDCESLNLNLN 448 (557)
Q Consensus 403 ~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~l~~l~l~~~ 448 (557)
+..++ ..++.+++|++|++++| .+..++.. +..+.+++.++++.|
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 99665 56999999999999984 45555532 233344444444333
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=6.5e-12 Score=110.98 Aligned_cols=127 Identities=21% Similarity=0.292 Sum_probs=99.0
Q ss_pred hhcCCCcceEeeCCCChhhhccccCCCC-ccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccc-cCCCCC
Q 046626 316 ISKSQFLRVIDLSETAIEVLSREIGNLK-HLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDI-RYLVSL 393 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L 393 (557)
+..+.+|++|++++|.+..+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|. +..+|..+ +.+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 4467889999999999998854 55554 99999999995 7777 468999999999999987 55667655 899999
Q ss_pred cEEEccccccccccc--CcCCCCCCCeecccccccccccccc----eEecccCCCccccC
Q 046626 394 RMFMVSTKQKSLLES--GIGCLSSLRFLMISDCENLEYFSLE----TLMLKDCESLNLNL 447 (557)
Q Consensus 394 ~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~----~~~l~~l~~l~l~~ 447 (557)
++|++++|.+..+|. .++.+++|++|++++|+ +..+|.. +..+.+++.++++.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 999999999998876 78999999999999864 4444432 33444455554443
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=3.1e-10 Score=100.19 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=65.9
Q ss_pred cceEeeCCCChhhhccccCCCCccCeeeccCCcCccccch-hhhcCCcCcEeecCCcCCCccccc-cccCCCCCcEEEcc
Q 046626 322 LRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPN-SICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVS 399 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~ 399 (557)
.+.++++++++..+|..+. ++|+.|++++|. +..+|. .+..+++|++|++++|... .+|. .++.+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 4567777777777775543 577888888775 555554 3567777888888777643 4443 45677777777777
Q ss_pred cccccccccC-cCCCCCCCeeccccc
Q 046626 400 TKQKSLLESG-IGCLSSLRFLMISDC 424 (557)
Q Consensus 400 ~~~~~~~~~~-~~~l~~L~~L~l~~c 424 (557)
+|.+..+|.. ++.+++|++|++++|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccccCHHHhhCCcccCEEECcCC
Confidence 7777755443 566777777777664
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.1e-10 Score=100.49 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=85.1
Q ss_pred cceEeeCCCChhhhccccCCCCccCeeeccCCcCcccc-chhhhcCCcCcEeecCCcCCCccccc-cccCCCCCcEEEcc
Q 046626 322 LRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKL-PNSICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVS 399 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~ 399 (557)
.++++++++.++.+|..+. ++|++|+|++|. +..+ |..+..+++|++|++++|.. ..+|. .+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECC
Confidence 5789999999999998774 789999999996 5555 67789999999999999874 45555 46899999999999
Q ss_pred ccccccccc-CcCCCCCCCeecccccc
Q 046626 400 TKQKSLLES-GIGCLSSLRFLMISDCE 425 (557)
Q Consensus 400 ~~~~~~~~~-~~~~l~~L~~L~l~~c~ 425 (557)
+|.+..+|. .++.+++|++|++++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999997765 48899999999999854
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=2.2e-10 Score=100.67 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=84.2
Q ss_pred cceEeeCCCChhhhccccCCCCccCeeeccCCcCcccc-chhhhcCCcCcEeecCCcCCCcccccc-ccCCCCCcEEEcc
Q 046626 322 LRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKL-PNSICELHSLQTLSLGGCRELEELPKD-IRYLVSLRMFMVS 399 (557)
Q Consensus 322 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~ 399 (557)
-+.++++++.+..+|..+. ++|++|+|++|. +..+ |..+..+++|++|++++|. +..+|.. +..+++|++|+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 3688999999999998775 789999999986 5555 6778999999999999986 5566665 5899999999999
Q ss_pred cccccccccC-cCCCCCCCeecccccc
Q 046626 400 TKQKSLLESG-IGCLSSLRFLMISDCE 425 (557)
Q Consensus 400 ~~~~~~~~~~-~~~l~~L~~L~l~~c~ 425 (557)
+|.+..+|.. ++.+++|++|++++|+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCC
Confidence 9999977765 8899999999999854
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=1.2e-12 Score=118.18 Aligned_cols=111 Identities=24% Similarity=0.331 Sum_probs=90.6
Q ss_pred HHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccCCC
Q 046626 312 LTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRYLV 391 (557)
Q Consensus 312 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 391 (557)
++..+.++++|++|++++|.+..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| .++.++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC-ccccCC
Confidence 3446778888999999998888887 88888899999999885 77888878888899999999886 44566 688888
Q ss_pred CCcEEEccccccccccc--CcCCCCCCCeeccccccc
Q 046626 392 SLRMFMVSTKQKSLLES--GIGCLSSLRFLMISDCEN 426 (557)
Q Consensus 392 ~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~c~~ 426 (557)
+|++|++++|.+..++. .++.+++|++|++++|..
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 99999999988886543 688889999999988654
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.08 E-value=4.8e-10 Score=98.96 Aligned_cols=106 Identities=22% Similarity=0.260 Sum_probs=86.9
Q ss_pred CCcceEeeCCCChhhhccc-cCCCCccCeeeccCCcCccccchh-hhcCCcCcEeecCCcCCCccccccccCCCCCcEEE
Q 046626 320 QFLRVIDLSETAIEVLSRE-IGNLKHLRYLDLSDNDKIKKLPNS-ICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFM 397 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 397 (557)
++|++|++++|.+..+|.. ++.+++|++|++++|. +..+|.. +..+++|++|++++|......+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 5789999999999877664 6889999999999985 6666654 68899999999999875544444578999999999
Q ss_pred cccccccccccC-cCCCCCCCeeccccccc
Q 046626 398 VSTKQKSLLESG-IGCLSSLRFLMISDCEN 426 (557)
Q Consensus 398 l~~~~~~~~~~~-~~~l~~L~~L~l~~c~~ 426 (557)
+++|.+..+|.. +..+++|++|++++|+.
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 999999877665 57899999999998654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=9.8e-13 Score=118.77 Aligned_cols=104 Identities=24% Similarity=0.344 Sum_probs=56.8
Q ss_pred hhcCCCcceEeeCCCChh-------hhccccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCcccccccc
Q 046626 316 ISKSQFLRVIDLSETAIE-------VLSREIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIR 388 (557)
Q Consensus 316 ~~~~~~L~~L~l~~~~~~-------~l~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~ 388 (557)
+.....++.++++.+.+. .+|..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhh
Confidence 344455555555444433 223355566666666666653 55555 56666666666666654 335555555
Q ss_pred CCCCCcEEEcccccccccccCcCCCCCCCeecccc
Q 046626 389 YLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISD 423 (557)
Q Consensus 389 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 423 (557)
.+++|++|++++|.+..+| .++.+++|++|++++
T Consensus 91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESE
T ss_pred cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCC
Confidence 5566666666666555544 355555555555554
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=9.1e-09 Score=100.57 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=61.2
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhc-CCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccc-hhhhc----
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISK-SQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLP-NSICE---- 365 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~---- 365 (557)
+.+++.|.+.+.-. ...+. .+.. +++|++|||++|.+.......+.++.++++.+..+ .+| ..|..
T Consensus 24 ~~~l~~L~l~g~i~---~~~~~-~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLN---AEDFR-HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEEC---HHHHH-HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecccc---HHHHH-HHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccc
Confidence 45667777763211 11122 2333 78899999999888722211222233444444433 222 23444
Q ss_pred ----CCcCcEeecCCcCCCccccc-cccCCCCCcEEEccccccccc-ccCcCCCCCCCeec
Q 046626 366 ----LHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVSTKQKSLL-ESGIGCLSSLRFLM 420 (557)
Q Consensus 366 ----l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~ 420 (557)
+++|+.|++.. . +..+++ .+..+++|+.+++..|.+..+ +..|..+.++..+.
T Consensus 96 ~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp EEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred cccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 67777777765 3 444443 456667777777776665433 33444444444443
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.82 E-value=9.6e-09 Score=101.24 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=63.7
Q ss_pred eEeeCCC-ChhhhccccCCCCccCeeeccC-CcCccccc-hhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccc
Q 046626 324 VIDLSET-AIEVLSREIGNLKHLRYLDLSD-NDKIKKLP-NSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVST 400 (557)
Q Consensus 324 ~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~-~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 400 (557)
.++++++ .++.+|. +..+++|++|+|++ |. +..+| ..|+.|++|++|+|++|......|..++.+++|+.|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3466666 6777777 77777777777775 53 55555 4566777777777777664444455567777777777777
Q ss_pred ccccccccCcCCCCCCCeeccccc
Q 046626 401 KQKSLLESGIGCLSSLRFLMISDC 424 (557)
Q Consensus 401 ~~~~~~~~~~~~l~~L~~L~l~~c 424 (557)
|.+..+|..+....+|+.|++.+|
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CccceeCHHHcccCCceEEEeeCC
Confidence 777766554433333777777654
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=2.2e-08 Score=87.81 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=74.9
Q ss_pred CCcceEeeCCCChhhh-ccccCCCCccCeeeccCCcCccccchh-hhcCCcCcEeecCCcCCCcccccc-ccCCCCCcEE
Q 046626 320 QFLRVIDLSETAIEVL-SREIGNLKHLRYLDLSDNDKIKKLPNS-ICELHSLQTLSLGGCRELEELPKD-IRYLVSLRMF 396 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L 396 (557)
++|++|++++|.+..+ |..+..+++|++|+|++|. +..+|.. +..+++|++|++++|. +..+|.. +..+++|++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEE
Confidence 6799999999999977 5578999999999999995 7778765 5799999999999987 4566654 8899999999
Q ss_pred EcccccccccccCc
Q 046626 397 MVSTKQKSLLESGI 410 (557)
Q Consensus 397 ~l~~~~~~~~~~~~ 410 (557)
++++|.+...+..+
T Consensus 111 ~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 111 YLYNNPWDCECRDI 124 (174)
T ss_dssp ECCSSCBCTTBGGG
T ss_pred EeCCCCcccccccH
Confidence 99999887555433
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.72 E-value=2.8e-08 Score=86.78 Aligned_cols=85 Identities=25% Similarity=0.323 Sum_probs=71.8
Q ss_pred CCcceEeeCCCChhhh-ccccCCCCccCeeeccCCcCccccchh-hhcCCcCcEeecCCcCCCccccc-cccCCCCCcEE
Q 046626 320 QFLRVIDLSETAIEVL-SREIGNLKHLRYLDLSDNDKIKKLPNS-ICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMF 396 (557)
Q Consensus 320 ~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L 396 (557)
+.|++|++++|.++.+ |..+..+++|++|+|++|. +..+|.. +..+++|++|++++|.. ..+|. .+..+++|++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCcc-CEeCHHHhcCCCCCCEE
Confidence 6789999999999987 5668999999999999996 7777765 58999999999999874 45554 58899999999
Q ss_pred Eccccccccc
Q 046626 397 MVSTKQKSLL 406 (557)
Q Consensus 397 ~l~~~~~~~~ 406 (557)
++++|.+...
T Consensus 108 ~L~~N~~~c~ 117 (170)
T 3g39_A 108 WLLNNPWDCA 117 (170)
T ss_dssp ECCSSCBCTT
T ss_pred EeCCCCCCCC
Confidence 9999987643
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=3.3e-08 Score=96.52 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=34.7
Q ss_pred CCCcceEeeCCCChhhhcc-ccCCCCccCeeeccCCcCccccc-hhhhcCCcCcEeecC
Q 046626 319 SQFLRVIDLSETAIEVLSR-EIGNLKHLRYLDLSDNDKIKKLP-NSICELHSLQTLSLG 375 (557)
Q Consensus 319 ~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~ 375 (557)
+++|+.++++. .++.+++ .|..+++|+.+++++|. +..++ ..|..+.++..+...
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCc
Confidence 78888888877 6776654 47778888888888775 43433 334454455555443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=1e-06 Score=88.04 Aligned_cols=219 Identities=15% Similarity=0.122 Sum_probs=124.6
Q ss_pred ccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhc-cccCCCCccCeeeccCCcCccccchhhhcCC
Q 046626 289 LSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLS-REIGNLKHLRYLDLSDNDKIKKLPNSICELH 367 (557)
Q Consensus 289 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 367 (557)
+.++ +|+.+.+..+- . .+...+|.++ .|+.+.+.. .+..++ ..+.++.+|+.+++.+|. +..+|.......
T Consensus 132 F~~~-~L~~i~l~~~i-~---~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~ 203 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEGL-K---SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYA 203 (401)
T ss_dssp TTTC-CCSEEECCTTC-C---EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTC
T ss_pred cccC-CccEEEeCCCc-c---EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeec
Confidence 3343 57777665321 1 1222334443 577777775 455443 457777888888887764 677776555567
Q ss_pred cCcEeecCCcCCCccccc-cccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccccc-cceEecccCCCccc
Q 046626 368 SLQTLSLGGCRELEELPK-DIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFS-LETLMLKDCESLNL 445 (557)
Q Consensus 368 ~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~l~~l~l 445 (557)
+|+.+.+..+ +..++. .+..+++|+.+.+..+-...-...|.. .+|+.+.+. +.+..++ ..+....+|+.+.+
T Consensus 204 ~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 204 GIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP--NGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE--TTCCEECTTTTTTCTTCCEEEE
T ss_pred ccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC--CCccEEChhHhhCCCCCCEEEe
Confidence 7888887642 444443 456777888888776432222334444 677777774 2344442 22334445555554
Q ss_pred cCccccccc--cccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeec
Q 046626 446 NLNIEMEGE--ESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIG 523 (557)
Q Consensus 446 ~~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~ 523 (557)
..+...... .-....+..+.+|+.+.+.. .+..++...+ ..+.+|+.+.|.++ ....-+.+|.++ +|+.+.+.
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 433211000 00111224556777777763 4666665543 56778888888654 333445568888 88888888
Q ss_pred CC
Q 046626 524 GC 525 (557)
Q Consensus 524 ~c 525 (557)
++
T Consensus 354 ~n 355 (401)
T 4fdw_A 354 GT 355 (401)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=1.5e-07 Score=92.55 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=68.8
Q ss_pred HHHHhhcCCCcceEeeCC-CChhhhc-cccCCCCccCeeeccCCcCccccchhhhcCCcCcEeecCCcCCCccccccccC
Q 046626 312 LTSCISKSQFLRVIDLSE-TAIEVLS-REIGNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGGCRELEELPKDIRY 389 (557)
Q Consensus 312 ~~~~~~~~~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 389 (557)
+|. +..+.+|++|+|++ |.+..+| ..++.+++|++|+|++|......|..|..|++|+.|+|++|. +..+|..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcc
Confidence 444 77788899999985 8888776 468889999999999886333445567889999999999877 5566665544
Q ss_pred CCCCcEEEccccccc
Q 046626 390 LVSLRMFMVSTKQKS 404 (557)
Q Consensus 390 l~~L~~L~l~~~~~~ 404 (557)
..+|+.|++.+|.+.
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 444999999888765
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=4.8e-08 Score=95.97 Aligned_cols=147 Identities=12% Similarity=0.007 Sum_probs=71.8
Q ss_pred cchhhhcCCcCcEeecCCcCCCccccccccCCCCCcEEEccccccc-ccccCc--CCCCCCCeecccccccccccccceE
Q 046626 359 LPNSICELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKS-LLESGI--GCLSSLRFLMISDCENLEYFSLETL 435 (557)
Q Consensus 359 lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~--~~l~~L~~L~l~~c~~l~~l~~~~~ 435 (557)
++..+..+++|+.|++++|... .+|. + .+++|++|++..+.+. .....+ ..+++|+.|+|+.+..... ...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~---~~~ 237 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG---FDG 237 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT---CCS
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc---cch
Confidence 4444556667777777665322 3333 3 2666777777665543 111122 2566777776643211000 000
Q ss_pred ecccCCCccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhc-cCCCcccceEeccccccccc----CCcc
Q 046626 436 MLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLL-QGSTKTLKNLIIRNCPNFMA----LPES 510 (557)
Q Consensus 436 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~-~~~l~~L~~L~L~~c~~~~~----lp~~ 510 (557)
.+..+.. ......+++|++|.+.+|......+..+. .+.+++|++|+|+.|..... ++..
T Consensus 238 ~~~~l~~---------------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 238 DMNVFRP---------------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302 (362)
T ss_dssp CGGGTGG---------------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred hHHHHHH---------------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh
Confidence 0000000 00012456777777776543222222221 13467777777777764331 3433
Q ss_pred CCCCCCcceeeecCCC
Q 046626 511 LRNLEALETLAIGGCP 526 (557)
Q Consensus 511 l~~l~~L~~L~l~~c~ 526 (557)
+..+++|+.|++++|.
T Consensus 303 L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHTTCSEEECCSBB
T ss_pred cccCCcceEEECCCCc
Confidence 4556777777777764
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.40 E-value=3.3e-06 Score=84.40 Aligned_cols=219 Identities=9% Similarity=0.079 Sum_probs=142.5
Q ss_pred ccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccc-hhhhcCC
Q 046626 289 LSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLP-NSICELH 367 (557)
Q Consensus 289 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~ 367 (557)
+.+ ..|+.+.+.. ... .+....|.++.+|+.++++.+.+..++...-...+|+.+.+..+ +..++ ..|..+.
T Consensus 154 F~~-~~L~~i~lp~-~l~---~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~ 226 (401)
T 4fdw_A 154 FFN-STVQEIVFPS-TLE---QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTS 226 (401)
T ss_dssp TTT-CCCCEEECCT-TCC---EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCT
T ss_pred cCC-CCceEEEeCC-Ccc---EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCC
Confidence 444 3688888763 221 23334588899999999999999988776545688999999854 66655 4577888
Q ss_pred cCcEeecCCcCCCccccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccc----cccc-cceEecccCCC
Q 046626 368 SLQTLSLGGCRELEELPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENL----EYFS-LETLMLKDCES 442 (557)
Q Consensus 368 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l----~~l~-~~~~~l~~l~~ 442 (557)
+|+.+++..+ +..++.....-.+|+.+.+..+-.......|..+++|+.+.+.++... ..++ -.+..+.+|+.
T Consensus 227 ~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 227 QLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp TCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred CCCEEecCCC--ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 9999999863 555655443337899998854332233567888899999988763211 1222 22333444555
Q ss_pred ccccCccccccccccccccCCCCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCC-Ccceee
Q 046626 443 LNLNLNIEMEGEESHCDRNKTRLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLE-ALETLA 521 (557)
Q Consensus 443 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~-~L~~L~ 521 (557)
+.+..+...... ..+..+.+|+.+.|.. ++..++...+ ..+ +|+.+++.+|......+..+..++ +++.|.
T Consensus 305 l~l~~~i~~I~~----~aF~~c~~L~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 305 FEIPESIRILGQ----GLLGGNRKVTQLTIPA--NVTQINFSAF-NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIR 376 (401)
T ss_dssp ECCCTTCCEECT----TTTTTCCSCCEEEECT--TCCEECTTSS-SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEE
T ss_pred EEeCCceEEEhh----hhhcCCCCccEEEECc--cccEEcHHhC-CCC-CCCEEEEcCCCCcccccccccCCCCCccEEE
Confidence 554422111111 1225567899999954 4667766544 556 999999999976655566677774 778888
Q ss_pred ecC
Q 046626 522 IGG 524 (557)
Q Consensus 522 l~~ 524 (557)
+-.
T Consensus 377 vp~ 379 (401)
T 4fdw_A 377 VPA 379 (401)
T ss_dssp ECG
T ss_pred eCH
Confidence 765
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.40 E-value=8.4e-08 Score=94.98 Aligned_cols=155 Identities=15% Similarity=0.101 Sum_probs=99.8
Q ss_pred CceEEEEeecCCCCcccc---ccccc-CCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhh-----hccc
Q 046626 268 KRVCHLSFVGANTSRNDF---SSLLS-DLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEV-----LSRE 338 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~---~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~ 338 (557)
..++.+++.++.+..... ...+. ....|+.|.+..+..+. .........+++|+.|+|++|.+.. +...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP--AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH--HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH--HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 356677777776654322 12222 23688888888766542 2223333345578888898888763 2222
Q ss_pred c-CCCCccCeeeccCCcCcc-----ccchhhhcCCcCcEeecCCcCCCc----cccccccCCCCCcEEEcccccccc---
Q 046626 339 I-GNLKHLRYLDLSDNDKIK-----KLPNSICELHSLQTLSLGGCRELE----ELPKDIRYLVSLRMFMVSTKQKSL--- 405 (557)
Q Consensus 339 ~-~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~--- 405 (557)
+ ...++|+.|+|++|. +. .++..+...++|++|++++|.... .++..+...++|+.|++++|.++.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 3 346778889998885 43 355556778888899988887432 235566677788888888888762
Q ss_pred --cccCcCCCCCCCeecccccc
Q 046626 406 --LESGIGCLSSLRFLMISDCE 425 (557)
Q Consensus 406 --~~~~~~~l~~L~~L~l~~c~ 425 (557)
++..+...++|++|++++|.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhCCCCCEEeccCCC
Confidence 33445566788888888764
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.23 E-value=6.6e-07 Score=88.55 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=103.2
Q ss_pred CceEEEEeecCCCCcccccccccCCCCCcEEEecCCCccch-hHHHHHHh-hcCCCcceEeeCCCChhh-----hccccC
Q 046626 268 KRVCHLSFVGANTSRNDFSSLLSDLRRARTILFPINDEKTN-QSILTSCI-SKSQFLRVIDLSETAIEV-----LSREIG 340 (557)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~-----l~~~~~ 340 (557)
..++.+.+..+.+...........+++|+.|.+..+..+.. ...+...+ ...+.|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 57888999888876654545555677899999998876532 23344444 356889999999999873 566677
Q ss_pred CCCccCeeeccCCcCcc-----ccchhhhcCCcCcEeecCCcCCCc----cccccccCCCCCcEEEccccccc
Q 046626 341 NLKHLRYLDLSDNDKIK-----KLPNSICELHSLQTLSLGGCRELE----ELPKDIRYLVSLRMFMVSTKQKS 404 (557)
Q Consensus 341 ~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~ 404 (557)
..++|++|+|++|. +. .++..+...++|++|++++|.... .++..+...++|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 88999999999996 54 345667788999999999998643 34455667789999999999887
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=1.8e-07 Score=91.87 Aligned_cols=144 Identities=16% Similarity=0.055 Sum_probs=79.7
Q ss_pred ccccccCCCCCcEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccC
Q 046626 383 LPKDIRYLVSLRMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNK 462 (557)
Q Consensus 383 ~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~ 462 (557)
++..+..+++|+.|.++++.-..++. + .+++|+.|++..|. +..-.... ....
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~------------------------l~~~ 216 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVVED------------------------ILGS 216 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHHHH------------------------HHHS
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CChHHHHH------------------------HHHc
Confidence 33445567888888887763223333 3 36778888776543 21110000 0012
Q ss_pred CCCCcceEEEeCC-------CCCCCCChhhccCCCcccceEecccccccccCCcc---CCCCCCcceeeecCCCcccccc
Q 046626 463 TRLHLRKLFVEGL-------PPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPES---LRNLEALETLAIGGCPALSERC 532 (557)
Q Consensus 463 ~~~~L~~L~l~~~-------~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~---l~~l~~L~~L~l~~c~~l~~~~ 532 (557)
.+++|++|.|+.. ..+..+...+....+++|+.|+|++|.+....+.. ...+++|++|+|+.|. +....
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G 295 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEG 295 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHH
Confidence 4667777777521 11222222221135899999999999865322211 1358999999998852 21100
Q ss_pred CCCCCCCCCcccccCceeeCCCCCC
Q 046626 533 KPQTGEDWPKIAHIPQVRIDDESDN 557 (557)
Q Consensus 533 ~~~~~~~~~~~~~l~~l~~l~~~~n 557 (557)
.......+.++++|+.|++++|
T Consensus 296 ---~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 296 ---ARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp ---HHHHHTTHHHHTTCSEEECCSB
T ss_pred ---HHHHHhhcccCCcceEEECCCC
Confidence 0001223457889999998876
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=2.1e-06 Score=75.87 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=74.2
Q ss_pred HHHHHHhhcCCCcceEeeCCC-Chh-----hhccccCCCCccCeeeccCCcCcc-----ccchhhhcCCcCcEeecCCcC
Q 046626 310 SILTSCISKSQFLRVIDLSET-AIE-----VLSREIGNLKHLRYLDLSDNDKIK-----KLPNSICELHSLQTLSLGGCR 378 (557)
Q Consensus 310 ~~~~~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~ 378 (557)
..+...+...+.|+.|+|++| .+. .+...+...++|++|+|++|. +. .+...+...++|++|++++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 445566667777888888777 655 345556666778888888775 43 234445566778888888776
Q ss_pred CCcc----ccccccCCCCCcEEEc--ccccccc-----cccCcCCCCCCCeeccccc
Q 046626 379 ELEE----LPKDIRYLVSLRMFMV--STKQKSL-----LESGIGCLSSLRFLMISDC 424 (557)
Q Consensus 379 ~~~~----~p~~~~~l~~L~~L~l--~~~~~~~-----~~~~~~~l~~L~~L~l~~c 424 (557)
.... +...+...++|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4332 4455666677888888 6676652 3344555677888888765
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=7.5e-06 Score=72.27 Aligned_cols=118 Identities=11% Similarity=0.090 Sum_probs=86.8
Q ss_pred cccccCCCCCcEEEecCC-Cccc-hhHHHHHHhhcCCCcceEeeCCCChh-----hhccccCCCCccCeeeccCCcCccc
Q 046626 286 SSLLSDLRRARTILFPIN-DEKT-NQSILTSCISKSQFLRVIDLSETAIE-----VLSREIGNLKHLRYLDLSDNDKIKK 358 (557)
Q Consensus 286 ~~~~~~~~~l~~l~~~~~-~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~ 358 (557)
...+...+.|++|.+..+ ..+. ....+...+...+.|++|+|++|.+. .+...+...++|++|+|++|. ++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 445667888999999876 5542 33456667778889999999999887 245556667789999999985 543
Q ss_pred -----cchhhhcCCcCcEeec--CCcCCCcc----ccccccCCCCCcEEEccccccc
Q 046626 359 -----LPNSICELHSLQTLSL--GGCRELEE----LPKDIRYLVSLRMFMVSTKQKS 404 (557)
Q Consensus 359 -----lp~~~~~l~~L~~L~l--~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~ 404 (557)
+...+...++|++|++ ++|..... +...+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4566777889999999 77765433 3445566688999999988765
No 155
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.94 E-value=0.00022 Score=69.73 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=105.6
Q ss_pred eEEEEEeCCCCCC-------hhhHHHHHHhcCCCCCCcEEEEecCChHHHHHh----cC-----CCCCCcEEcCCCChhh
Q 046626 14 RYLFVMDDVWNED-------PKVWDELKSLLWGGAKGSKILVTTRSNKVASIM----GT-----MRGTGGYKLEGLPYES 77 (557)
Q Consensus 14 r~LlVlDdv~~~~-------~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~----~~-----~~~~~~~~~~~L~~~~ 77 (557)
+++|||||++.-+ ...+..+...... .++.++|+|++...+.... .. ......+++.+|+.++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 8999999995422 1223334333322 2478899999887643221 10 0112369999999999
Q ss_pred hHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHH-HHHHhhhccccccccCCchhhHh-h
Q 046626 78 CLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYW-EYVRDNEIWKLEQKENDILPALK-L 155 (557)
Q Consensus 78 a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w-~~l~~~~~~~~~~~~~~i~~~L~-~ 155 (557)
+.+++....-..+.... ...+.+++..|+|+|+++..++..+....+...+ ..+.+.. ...+...+. .
T Consensus 208 ~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~l 277 (350)
T 2qen_A 208 SVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-------KGLIMGELEEL 277 (350)
T ss_dssp HHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH-------HHHHHHHHHHH
Confidence 99999875422222222 3456889999999999999998765432222111 1111110 000111111 1
Q ss_pred cccCCChhhHHHhhhhccCCCCcccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCceec
Q 046626 156 SYDQLPPHLKQCFAYCSIFPKDYDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQDF 224 (557)
Q Consensus 156 sy~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~ 224 (557)
.+ . ++..+..+..+|+ .. .+...+........ + .........+++.|.+.+++...
T Consensus 278 ~~-~-~~~~~~~l~~la~--g~--~~~~~l~~~~~~~~------~-~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 278 RR-R-SPRYVDILRAIAL--GY--NRWSLIRDYLAVKG------T-KIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HH-H-CHHHHHHHHHHHT--TC--CSHHHHHHHHHHTT------C-CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred Hh-C-ChhHHHHHHHHHh--CC--CCHHHHHHHHHHHh------C-CCCHHHHHHHHHHHHhCCCEEec
Confidence 11 2 6888999999987 21 34444443332211 0 01133456789999999998764
No 156
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.90 E-value=0.00023 Score=69.78 Aligned_cols=187 Identities=13% Similarity=0.113 Sum_probs=105.5
Q ss_pred ceEEEEEeCCCCCC----hhhHHHHHHhcCCCCCCcEEEEecCChHHHHHh----c---CC--CCCCcEEcCCCChhhhH
Q 046626 13 KRYLFVMDDVWNED----PKVWDELKSLLWGGAKGSKILVTTRSNKVASIM----G---TM--RGTGGYKLEGLPYESCL 79 (557)
Q Consensus 13 kr~LlVlDdv~~~~----~~~~~~l~~~~~~~~~gsrIivTtr~~~v~~~~----~---~~--~~~~~~~~~~L~~~~a~ 79 (557)
++++|||||++.-+ ...+..+..... ..++.++|+|++........ . .. .....+++.+|+.+++.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 49999999995421 122333333322 22467899999987643321 1 01 11136899999999999
Q ss_pred HHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCCChHHH-HHHHhhhccccccccCCchhhHh-hcc
Q 046626 80 SLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGSTDEHYW-EYVRDNEIWKLEQKENDILPALK-LSY 157 (557)
Q Consensus 80 ~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~~~~~w-~~l~~~~~~~~~~~~~~i~~~L~-~sy 157 (557)
+++.......+.... .. .+++..|+|+|+++..++..+....+...| ..+.+.. ...+...+. ..+
T Consensus 216 ~~l~~~~~~~~~~~~-~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~ 283 (357)
T 2fna_A 216 EFLRRGFQEADIDFK-DY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLH 283 (357)
T ss_dssp HHHHHHHHHHTCCCC-CH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCC-cH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 999875421122211 11 789999999999999999876533222222 1111100 000111111 111
Q ss_pred --cCCChhhHHHhhhhccCCCCcccChHHHHHHHH-HcCCccCCCCCCChHhHHHHHHHHHHhCCCceec
Q 046626 158 --DQLPPHLKQCFAYCSIFPKDYDFDSVLLIRFWM-AHGLLQSPNENEEPENIGMRYLNELLSRSFFQDF 224 (557)
Q Consensus 158 --~~L~~~~k~~fl~~a~fp~~~~~~~~~li~~w~-~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~ 224 (557)
..+++..+..+..+|+ +. +...+..... ..|. .........+++.|.+.+++...
T Consensus 284 ~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 284 GREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp TCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEES
T ss_pred ccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEec
Confidence 1577889999999998 21 3333332211 1120 01123456789999999998764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.84 E-value=1.1e-05 Score=74.99 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=28.7
Q ss_pred hcCCCcceEeeCCCChhhhc---cccCCCCccCeeeccCCcCccccchhhhcCC--cCcEeecCCcCCC
Q 046626 317 SKSQFLRVIDLSETAIEVLS---REIGNLKHLRYLDLSDNDKIKKLPNSICELH--SLQTLSLGGCREL 380 (557)
Q Consensus 317 ~~~~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~ 380 (557)
.++++|+.|+|++|.+..++ ..+..+++|+.|+|++|. +..+. .+..+. +|++|++++|...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hhhhcccCCcceEEccCCcCc
Confidence 34555555555555555322 333445555555555553 33332 133333 4555555555433
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=6.7e-06 Score=70.84 Aligned_cols=89 Identities=15% Similarity=0.261 Sum_probs=51.4
Q ss_pred CCcceEeeCCCChh-hhccccCCCCccCeeeccCCcCcccc-chhhhcC----CcCcEeecCCcCCCccccccccCCCCC
Q 046626 320 QFLRVIDLSETAIE-VLSREIGNLKHLRYLDLSDNDKIKKL-PNSICEL----HSLQTLSLGGCRELEELPKDIRYLVSL 393 (557)
Q Consensus 320 ~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l----~~L~~L~l~~~~~~~~~p~~~~~l~~L 393 (557)
..|+.||++++.++ .-...+..+++|+.|+|++|..+..- -..+..+ ++|++|++++|..+..- +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~--G------- 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK--G------- 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH--H-------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH--H-------
Confidence 35777777777765 22344566777777777777544321 1224443 25777777766533221 0
Q ss_pred cEEEcccccccccccCcCCCCCCCeeccccccccccc
Q 046626 394 RMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYF 430 (557)
Q Consensus 394 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 430 (557)
-..+..+++|+.|++++|+.++..
T Consensus 132 -------------l~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 132 -------------IIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -------------HHHGGGCTTCCEEEEESCTTCCCH
T ss_pred -------------HHHHhcCCCCCEEECCCCCCCCch
Confidence 122455677888888888766643
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.77 E-value=1.1e-05 Score=74.91 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=58.8
Q ss_pred EeeCCCChhhhccc----cCCCCccCeeeccCCcCcc---ccchhhhcCCcCcEeecCCcCCCccccccccCCC--CCcE
Q 046626 325 IDLSETAIEVLSRE----IGNLKHLRYLDLSDNDKIK---KLPNSICELHSLQTLSLGGCRELEELPKDIRYLV--SLRM 395 (557)
Q Consensus 325 L~l~~~~~~~l~~~----~~~l~~L~~L~l~~~~~~~---~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~--~L~~ 395 (557)
++++.|....++.. ..++++|+.|+|++|. +. .+|..+..+++|++|+|++|... .+ ..+..+. +|++
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcce
Confidence 55666654443332 2457788888888885 44 44566678888888888887643 33 2344444 7888
Q ss_pred EEccccccc-ccc-------cCcCCCCCCCeecc
Q 046626 396 FMVSTKQKS-LLE-------SGIGCLSSLRFLMI 421 (557)
Q Consensus 396 L~l~~~~~~-~~~-------~~~~~l~~L~~L~l 421 (557)
|++++|.+. .+| ..+..+++|+.||-
T Consensus 225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 888887765 232 12556677777653
No 160
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.68 E-value=0.00043 Score=69.38 Aligned_cols=207 Identities=12% Similarity=-0.022 Sum_probs=109.8
Q ss_pred HHHHHHcC--CceEEEEEeCCCCC------ChhhHHHHHHhcCCC---C--CCcEEEEecCChHHHHHhc-------CCC
Q 046626 4 QIMRSCLN--GKRYLFVMDDVWNE------DPKVWDELKSLLWGG---A--KGSKILVTTRSNKVASIMG-------TMR 63 (557)
Q Consensus 4 ~~l~~~L~--~kr~LlVlDdv~~~------~~~~~~~l~~~~~~~---~--~gsrIivTtr~~~v~~~~~-------~~~ 63 (557)
+.+.+.+. +++++|||||+|.- +...+..+...+... + ....||+||+..++..... ..-
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~ 206 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQI 206 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTC
T ss_pred HHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhc
Confidence 34455554 67999999999642 123333333333211 1 2345888887665432211 111
Q ss_pred CCCcEEcCCCChhhhHHHHHHHhccCC--CCCChhHHHHHHHHHHHhC------CChhHHHHHHHh-hc-----CC--CC
Q 046626 64 GTGGYKLEGLPYESCLSLFMKCAFKEG--QHKNPNLVKIGEEIVKKSG------GIPLAVRTLGSL-LY-----GS--TD 127 (557)
Q Consensus 64 ~~~~~~~~~L~~~~a~~Lf~~~a~~~~--~~~~~~~~~l~~~i~~~c~------glPlal~~ig~~-L~-----~~--~~ 127 (557)
...+++.+++.++++++|...+.... ...+ .+....+++.|+ |.|..+..+... .. +. -+
T Consensus 207 -~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~ 282 (412)
T 1w5s_A 207 -GFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLS 282 (412)
T ss_dssp -SEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred -CCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 11399999999999999976542111 1112 345678888888 999765554432 21 11 11
Q ss_pred hHHHHHHHhhhccccccccCCc-hhhHhhcccCCChhhHHHhhhhccCC--CCcccChHHHHHHHHHcCCccCCCCCCCh
Q 046626 128 EHYWEYVRDNEIWKLEQKENDI-LPALKLSYDQLPPHLKQCFAYCSIFP--KDYDFDSVLLIRFWMAHGLLQSPNENEEP 204 (557)
Q Consensus 128 ~~~w~~l~~~~~~~~~~~~~~i-~~~L~~sy~~L~~~~k~~fl~~a~fp--~~~~~~~~~li~~w~~~g~i~~~~~~~~~ 204 (557)
...+...... .. ...+...+..|++..+.++..++.++ .+..++...+...+..... ...+.....
T Consensus 283 ~~~v~~~~~~----------~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 351 (412)
T 1w5s_A 283 EDLVRKAVSE----------NEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASL-TMYNVKPRG 351 (412)
T ss_dssp HHHHHHHHHH----------C------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH-HHSCCCCCC
T ss_pred HHHHHHHHHH----------HhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH-hhcCCCCCC
Confidence 2222221111 01 23455577889999999999888753 2233444444433321000 000011112
Q ss_pred HhHHHHHHHHHHhCCCceecc
Q 046626 205 ENIGMRYLNELLSRSFFQDFS 225 (557)
Q Consensus 205 ~~~~~~~l~~Li~~~ll~~~~ 225 (557)
......+++.|.+.+++....
T Consensus 352 ~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 352 YTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEeec
Confidence 344567799999999997653
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.65 E-value=0.00055 Score=68.22 Aligned_cols=108 Identities=9% Similarity=0.117 Sum_probs=45.8
Q ss_pred ccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhc-cccCCCCccCeeeccCCcCccccc-hhhh
Q 046626 287 SLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLS-REIGNLKHLRYLDLSDNDKIKKLP-NSIC 364 (557)
Q Consensus 287 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~lp-~~~~ 364 (557)
..+.++.+|+.+.+..+.......+-..+|.++..|+.+.+..+ ++.++ ..+..+.+|+.+.+..+ +..++ ..+.
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~ 157 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFS 157 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeeccccee
Confidence 34556666666655422111111112223445555555554432 22222 23445555666665532 22222 2344
Q ss_pred cCCcCcEeecCCcCCCccccccccCCCCCcEEEcc
Q 046626 365 ELHSLQTLSLGGCRELEELPKDIRYLVSLRMFMVS 399 (557)
Q Consensus 365 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 399 (557)
.+.+|+.+.+..+ +..+......-.+|+.+.+.
T Consensus 158 ~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 158 YCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp TCTTCCEEECCTT--CCEECTTTTTTCCCSEEEEC
T ss_pred cccccccccccce--eeEeccccccccceeEEEEC
Confidence 5555665555432 23333322223445555443
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.55 E-value=4.2e-05 Score=65.84 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=62.6
Q ss_pred CCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCC-hh-hhccccCCC----CccCeeeccCCcCccc-cchhhh
Q 046626 292 LRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETA-IE-VLSREIGNL----KHLRYLDLSDNDKIKK-LPNSIC 364 (557)
Q Consensus 292 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~l~~~~~~l----~~L~~L~l~~~~~~~~-lp~~~~ 364 (557)
--.|+.++++.+..+. .-+ ..+.++++|+.|+|++|. ++ .--..+..+ ++|++|+|++|..++. --..+.
T Consensus 60 ~~~L~~LDLs~~~Itd--~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMS--IGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCG--GGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CceEeEEeCcCCCccH--HHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 3478999998776442 222 235789999999999985 55 223344443 4799999999976653 123477
Q ss_pred cCCcCcEeecCCcCCCcc
Q 046626 365 ELHSLQTLSLGGCRELEE 382 (557)
Q Consensus 365 ~l~~L~~L~l~~~~~~~~ 382 (557)
.+++|++|++++|+.+..
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 899999999999986654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.54 E-value=0.0005 Score=68.48 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=25.1
Q ss_pred CCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecC
Q 046626 465 LHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGG 524 (557)
Q Consensus 465 ~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~ 524 (557)
.+|+.+.|.. .++.++...+ ..+.+|+.+++..+ ....-..+|.++++|+.+.+..
T Consensus 320 ~~L~~i~lp~--~v~~I~~~aF-~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 320 TSLVSIDLPY--LVEEIGKRSF-RGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCCEECCCT--TCCEECTTTT-TTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCEEEeCC--cccEEhHHhc-cCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 4455444432 2333433222 34455666555443 1222233455556666665543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.54 E-value=0.00093 Score=66.53 Aligned_cols=195 Identities=11% Similarity=0.053 Sum_probs=93.0
Q ss_pred HhhcCCCcceEeeCCCChhhhccccCCCCccCeeeccCCcCccccc-hhhhcCCcCcEeecCCcCCCccccccccCCCCC
Q 046626 315 CISKSQFLRVIDLSETAIEVLSREIGNLKHLRYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCRELEELPKDIRYLVSL 393 (557)
Q Consensus 315 ~~~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 393 (557)
.|.++++|+.+.+..+...--...+.++.+|+.+.+..+ +..++ ..+..+..|+.+.+..+ ...+........+|
T Consensus 157 aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCC
Confidence 355566666666654332212234555666666666543 33333 33455556666655432 22222333334455
Q ss_pred cEEEcccccccccccCcCCCCCCCeecccccccccccccceEecccCCCccccCccccccccccccccCCCCCcceEEEe
Q 046626 394 RMFMVSTKQKSLLESGIGCLSSLRFLMISDCENLEYFSLETLMLKDCESLNLNLNIEMEGEESHCDRNKTRLHLRKLFVE 473 (557)
Q Consensus 394 ~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 473 (557)
+.+.+..+....-...+..+.+|+.+.+... ...++ .....+|..+......... ..........+|+.+.+.
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~--~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNN--KLRIG--GSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCT--TCEEC--SCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEEC
T ss_pred ceEEECCCceecccccccccccceeEEcCCC--cceee--ccccccccccceeccCcee---eccccccccccccccccc
Confidence 5555543322222233445555555554321 11111 0011111111100000000 000112455678888775
Q ss_pred CCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecC
Q 046626 474 GLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGG 524 (557)
Q Consensus 474 ~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~ 524 (557)
. ++..++...+ ..+.+|+.++|.++ ....-..+|.++++|+.+.+..
T Consensus 306 ~--~i~~I~~~aF-~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~ 352 (394)
T 4fs7_A 306 D--SVKFIGEEAF-ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL 352 (394)
T ss_dssp T--TCCEECTTTT-TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred c--ccceechhhh-cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence 4 4566665533 56788999999754 2333355688888999888754
No 165
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.43 E-value=0.00056 Score=62.76 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=76.3
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHH-HHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVA-SIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~-~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++.+||+||++.-+...++.+...+.....+.++|+||+..... ..... ....+++.+++.++..+++...+...
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~--r~~~i~l~~l~~~e~~~~l~~~~~~~ 201 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRHQLEHILNEE 201 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHT
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH--HhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3467999999997666667777777776655678899988765322 11111 12379999999999999999887654
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHHHHHHHhh
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLL 122 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L 122 (557)
+...+ .+....+++.|+|.|..+..+....
T Consensus 202 ~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 202 HIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33322 2456789999999999988776544
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.27 E-value=0.0041 Score=61.44 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCCcceEEEeCCCCCCCCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeec
Q 046626 464 RLHLRKLFVEGLPPLLELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIG 523 (557)
Q Consensus 464 ~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~ 523 (557)
..+|+.+.+.. .+..++...+ ..+.+|+.+.+.++.....-..+|.++++|+.+.+.
T Consensus 262 ~~~l~~i~l~~--~i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 262 CTALKTLNFYA--KVKTVPYLLC-SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CTTCCEEEECC--CCSEECTTTT-TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred eehhccccccc--cceecccccc-ccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 34555555532 3444444333 456677777776654333334456667777777664
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.77 E-value=0.013 Score=56.33 Aligned_cols=193 Identities=15% Similarity=0.028 Sum_probs=104.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCCC------------------CCcEEEEecCChHHHHHhcCCCCCCcEEcCCCC
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGGA------------------KGSKILVTTRSNKVASIMGTMRGTGGYKLEGLP 74 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~~------------------~gsrIivTtr~~~v~~~~~~~~~~~~~~~~~L~ 74 (557)
+..+|+||++..-.....+.+...+.... ++.++|.||........--.......+.+..++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 56799999996555444454544432210 235677666643211100001111378999999
Q ss_pred hhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHHhhcCCC--------ChHHHHHHHhhhcccccccc
Q 046626 75 YESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLLYGST--------DEHYWEYVRDNEIWKLEQKE 146 (557)
Q Consensus 75 ~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L~~~~--------~~~~w~~l~~~~~~~~~~~~ 146 (557)
.++..+++...+...+...+ .+....+++++.|.|..+..+........ +......+
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~------------ 234 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEA------------ 234 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH------------
Confidence 99999999888754433332 34567888999999988877665543211 11111111
Q ss_pred CCchhhHhhcccCCChhhHHHhhhhccCCCCc-----------ccChHHHH----HHHHHcCCccCCCCCCChHhHHHHH
Q 046626 147 NDILPALKLSYDQLPPHLKQCFAYCSIFPKDY-----------DFDSVLLI----RFWMAHGLLQSPNENEEPENIGMRY 211 (557)
Q Consensus 147 ~~i~~~L~~sy~~L~~~~k~~fl~~a~fp~~~-----------~~~~~~li----~~w~~~g~i~~~~~~~~~~~~~~~~ 211 (557)
...+...+..+++.++..+........+- .+++..+. .+.+..|++.....+....+.|..+
T Consensus 235 ---~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~ 311 (324)
T 1hqc_A 235 ---LAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRH 311 (324)
T ss_dssp ---HHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred ---HHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHH
Confidence 11223345567777777776554322221 12322222 2456678876554556667777777
Q ss_pred HH-HHHhCCCcee
Q 046626 212 LN-ELLSRSFFQD 223 (557)
Q Consensus 212 l~-~Li~~~ll~~ 223 (557)
+. ++.+++++|+
T Consensus 312 ~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 312 LGYPPPVGPLLEP 324 (324)
T ss_dssp TTCCCCC------
T ss_pred HhcCCCCCCCCCC
Confidence 76 7777777663
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.65 E-value=0.038 Score=54.75 Aligned_cols=107 Identities=8% Similarity=0.026 Sum_probs=56.4
Q ss_pred CCCCCCceEEEEeecCC---CCcccccccccCCCCCcEEEecCCCccchhHHHHHHhhcCCCcceEeeCCCChhhhcccc
Q 046626 263 CQSIPKRVCHLSFVGAN---TSRNDFSSLLSDLRRARTILFPINDEKTNQSILTSCISKSQFLRVIDLSETAIEVLSREI 339 (557)
Q Consensus 263 ~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~ 339 (557)
.......++.+.+..+. +... -...+.++..|+.+.+...-. ......|.++.+|+.+.+..+...--...+
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i~~~~~~~----~I~~~aF~~c~~L~~i~lp~~~~~I~~~~F 156 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDIPILDSVT----EIDSEAFHHCEELDTVTIPEGVTSVADGMF 156 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBCGGGTTCS----EECTTTTTTCTTCCEEECCTTCCEECTTTT
T ss_pred HhhCCccCceEeecCCCCCeeeEe-chhhchhcccceeeccCCccc----eehhhhhhhhcccccccccceeeeecccce
Confidence 33334455666554331 1111 123456667777666552211 122334667788888888654322223346
Q ss_pred CCCCccCeeeccCCcCccccchhhhcCCcCcEeecCC
Q 046626 340 GNLKHLRYLDLSDNDKIKKLPNSICELHSLQTLSLGG 376 (557)
Q Consensus 340 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 376 (557)
..+.+|+.+.+.++ +..++.....-..|+.+.+..
T Consensus 157 ~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 157 SYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA 191 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT
T ss_pred ecccccccccccce--eeEeccccccccceeEEEECC
Confidence 67777888877653 555554433445666666643
No 169
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.48 E-value=0.013 Score=52.57 Aligned_cols=106 Identities=12% Similarity=0.066 Sum_probs=71.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHHH-HHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKVA-SIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v~-~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++.+||+||++.-.....+.+...+.....+.++|+||+..... ..... . ...+++.+++.++..+++...+...+
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~-r-~~~i~~~~~~~~~~~~~l~~~~~~~~ 178 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS-R-CAVFRFKPVPKEAMKKRLLEICEKEG 178 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT-T-SEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH-h-CceeecCCCCHHHHHHHHHHHHHHcC
Confidence 678999999997665555666766665555678899988775321 11111 1 12689999999999999998775433
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHHHHhh
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLL 122 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L 122 (557)
...+ .+....+++.++|.|..+..+...+
T Consensus 179 ~~~~---~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 179 VKIT---EDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3222 2445678899999999665544433
No 170
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.43 E-value=0.058 Score=53.05 Aligned_cols=198 Identities=12% Similarity=-0.020 Sum_probs=105.4
Q ss_pred HHHHHHc--CCceEEEEEeCCCCCChh--hHHHHHHhc---CCC--CCCcEEEEecCChH--------HHHHhcCCCCCC
Q 046626 4 QIMRSCL--NGKRYLFVMDDVWNEDPK--VWDELKSLL---WGG--AKGSKILVTTRSNK--------VASIMGTMRGTG 66 (557)
Q Consensus 4 ~~l~~~L--~~kr~LlVlDdv~~~~~~--~~~~l~~~~---~~~--~~gsrIivTtr~~~--------v~~~~~~~~~~~ 66 (557)
+.+.+.+ .+++++||||+++.-... ..+.+...+ ... ..+..+|.||+..+ +...+.. .
T Consensus 119 ~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~----~ 194 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGE----V 194 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTS----E
T ss_pred HHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCC----e
Confidence 3444555 356899999999432111 122232222 211 34567888887652 2221211 2
Q ss_pred cEEcCCCChhhhHHHHHHHhcc--CCCCCChhHHHHHHHHHHHhC---CChh-HHHHHHHhhc-----CC--CChHHHHH
Q 046626 67 GYKLEGLPYESCLSLFMKCAFK--EGQHKNPNLVKIGEEIVKKSG---GIPL-AVRTLGSLLY-----GS--TDEHYWEY 133 (557)
Q Consensus 67 ~~~~~~L~~~~a~~Lf~~~a~~--~~~~~~~~~~~l~~~i~~~c~---glPl-al~~ig~~L~-----~~--~~~~~w~~ 133 (557)
.+.+.+++.++..+++...+.. .....+++ ....+++.++ |.|. ++.++..+.. +. -+.+.++.
T Consensus 195 ~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~ 271 (387)
T 2v1u_A 195 ELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYS 271 (387)
T ss_dssp ECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHH
T ss_pred EEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 6899999999999999987532 11122223 3455666666 9994 3333333221 11 12333333
Q ss_pred HHhhhccccccccCCchhhHhhcccCCChhhHHHhhhhccCCCC-cccChHHHHHHHH----HcCCccCCCCCCChHhHH
Q 046626 134 VRDNEIWKLEQKENDILPALKLSYDQLPPHLKQCFAYCSIFPKD-YDFDSVLLIRFWM----AHGLLQSPNENEEPENIG 208 (557)
Q Consensus 134 l~~~~~~~~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~fp~~-~~~~~~~li~~w~----~~g~i~~~~~~~~~~~~~ 208 (557)
+.... ....+.-++..+++..+..+..++....+ ..+...++.+... ..| .........
T Consensus 272 a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 335 (387)
T 2v1u_A 272 ARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG------LEHVTLRRV 335 (387)
T ss_dssp HHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT------CCCCCHHHH
T ss_pred HHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC------CCCCCHHHH
Confidence 32211 11245556788999988888877743222 2344443333222 222 122234567
Q ss_pred HHHHHHHHhCCCceec
Q 046626 209 MRYLNELLSRSFFQDF 224 (557)
Q Consensus 209 ~~~l~~Li~~~ll~~~ 224 (557)
..+++.|...++++..
T Consensus 336 ~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 336 SGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCeEEE
Confidence 7889999999999764
No 171
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.16 E-value=0.2 Score=49.04 Aligned_cols=200 Identities=14% Similarity=-0.017 Sum_probs=108.4
Q ss_pred HHHHHHHcCCceEEEEEeCCCCCChhh-HHH-HHHhcCCCCCCcEEEEecCChHH----HHHhcCCCCCCcEEcCCCChh
Q 046626 3 QQIMRSCLNGKRYLFVMDDVWNEDPKV-WDE-LKSLLWGGAKGSKILVTTRSNKV----ASIMGTMRGTGGYKLEGLPYE 76 (557)
Q Consensus 3 ~~~l~~~L~~kr~LlVlDdv~~~~~~~-~~~-l~~~~~~~~~gsrIivTtr~~~v----~~~~~~~~~~~~~~~~~L~~~ 76 (557)
.+.+.+.++.++.+||||+++.-.... .+. +...+... .+.+||+||+.... ....... ....+.+.+++.+
T Consensus 123 ~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr-~~~~i~l~~l~~~ 200 (384)
T 2qby_B 123 IDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSS-LGPSVIFKPYDAE 200 (384)
T ss_dssp HHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHT-CCCEEEECCCCHH
T ss_pred HHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhc-CCCeEEECCCCHH
Confidence 345566677766699999994321111 122 22223222 67889999987532 1111000 0127999999999
Q ss_pred hhHHHHHHHhcc--CCCCCChhHHHHHHHHHHHhC---CChh-HHHHHHHhhc---C--CCChHHHHHHHhhhccccccc
Q 046626 77 SCLSLFMKCAFK--EGQHKNPNLVKIGEEIVKKSG---GIPL-AVRTLGSLLY---G--STDEHYWEYVRDNEIWKLEQK 145 (557)
Q Consensus 77 ~a~~Lf~~~a~~--~~~~~~~~~~~l~~~i~~~c~---glPl-al~~ig~~L~---~--~~~~~~w~~l~~~~~~~~~~~ 145 (557)
+..+++...+.. .....+++ ....+++.++ |.|. |+..+..+.. + .-+.+.+..+....
T Consensus 201 ~~~~il~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~------- 270 (384)
T 2qby_B 201 QLKFILSKYAEYGLIKGTYDDE---ILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY------- 270 (384)
T ss_dssp HHHHHHHHHHHHTSCTTSCCSH---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhhcccCCcCHH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH-------
Confidence 999999988532 11122222 3455666666 8877 4444443321 1 12344444433321
Q ss_pred cCCchhhHhhcccCCChhhHHHhhhhccCCCC-cccChHHHHHHHHHcCCccCCCCCCChHhHHHHHHHHHHhCCCceec
Q 046626 146 ENDILPALKLSYDQLPPHLKQCFAYCSIFPKD-YDFDSVLLIRFWMAHGLLQSPNENEEPENIGMRYLNELLSRSFFQDF 224 (557)
Q Consensus 146 ~~~i~~~L~~sy~~L~~~~k~~fl~~a~fp~~-~~~~~~~li~~w~~~g~i~~~~~~~~~~~~~~~~l~~Li~~~ll~~~ 224 (557)
....+..++..|++.++..+..++. ... -.+ ...+....-..| ...........++..|...++++..
T Consensus 271 ---~~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~-~~~~~~~~~~~g------~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 271 ---EQERLIEAVKALPFHYKLALRSLIE-SEDVMSA-HKMYTDLCNKFK------QKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---HHHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHH-HHHHHHHHHHTT------CCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---hcchHHHHHHcCCHHHHHHHHHHHH-hcccChH-HHHHHHHHHHcC------CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 1134566778899888888887776 211 111 111111112222 1222345567889999999999764
Q ss_pred c
Q 046626 225 S 225 (557)
Q Consensus 225 ~ 225 (557)
.
T Consensus 340 ~ 340 (384)
T 2qby_B 340 I 340 (384)
T ss_dssp E
T ss_pred e
Confidence 3
No 172
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.058 Score=51.55 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=69.3
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHH-HHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKV-ASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v-~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
.+++.++|+||++.-....++.+...+.....++++|+||+...- ...... ....+++.+++.++..+++...+...
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~ 182 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS--QCAILRYSKLSDEDVLKRLLQIIKLE 182 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh--hceEEeecCCCHHHHHHHHHHHHHHc
Confidence 456899999999765555555566666555567888888876432 111111 12279999999999999999876443
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhH-HHHHHH
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLA-VRTLGS 120 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPla-l~~ig~ 120 (557)
+...+ .+....+++.++|.|.. +..+..
T Consensus 183 ~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 183 DVKYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 32222 24457889999999954 444443
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.30 E-value=0.18 Score=49.48 Aligned_cols=199 Identities=13% Similarity=0.057 Sum_probs=107.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCC----CCcEEEEecCChHHHHHhcCC----CCCCcEEcCCCChhhhHHHHH
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGA----KGSKILVTTRSNKVASIMGTM----RGTGGYKLEGLPYESCLSLFM 83 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~----~gsrIivTtr~~~v~~~~~~~----~~~~~~~~~~L~~~~a~~Lf~ 83 (557)
+++.+||||+++.-+......+...+.... .+..||++|+..+........ -....+.+.+++.++..+++.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 568899999996655555566666554321 366788888776433221100 001259999999999999998
Q ss_pred HHhccC--CCCCChhHHHHHHHHHHHh---------CCChhHHHHHHH-hhc----CCCChHHHHHHHhhhccccccccC
Q 046626 84 KCAFKE--GQHKNPNLVKIGEEIVKKS---------GGIPLAVRTLGS-LLY----GSTDEHYWEYVRDNEIWKLEQKEN 147 (557)
Q Consensus 84 ~~a~~~--~~~~~~~~~~l~~~i~~~c---------~glPlal~~ig~-~L~----~~~~~~~w~~l~~~~~~~~~~~~~ 147 (557)
..+... ....+ .+....+++.+ .|.|..+..+.. +.. .......++.+..... ..
T Consensus 204 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~----~~-- 274 (389)
T 1fnn_A 204 DRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK----EV-- 274 (389)
T ss_dssp HHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH----HH--
T ss_pred HHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH----HH--
Confidence 875421 11112 34556778888 788755444332 221 0111111222211100 00
Q ss_pred CchhhHhhcccCCChhhHHHhhhhccCC---CCcccChHHHHHHHHH----cCCccCCCCCCChHhHHHHHHHHHHhCCC
Q 046626 148 DILPALKLSYDQLPPHLKQCFAYCSIFP---KDYDFDSVLLIRFWMA----HGLLQSPNENEEPENIGMRYLNELLSRSF 220 (557)
Q Consensus 148 ~i~~~L~~sy~~L~~~~k~~fl~~a~fp---~~~~~~~~~li~~w~~----~g~i~~~~~~~~~~~~~~~~l~~Li~~~l 220 (557)
....+.-.+..|++..+.++..++.+. .+..+....+...+.. .|. ..........++..|...++
T Consensus 275 -~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~l~~L~~~gl 347 (389)
T 1fnn_A 275 -LFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE------RPRVHSQLWSYLNDLREKGI 347 (389)
T ss_dssp -SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC------CCCCHHHHHHHHHHHHHTTS
T ss_pred -hhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC------CCCCHHHHHHHHHHHHhCCC
Confidence 011223345567888888877777543 1213444444443332 221 11123456788999999999
Q ss_pred ceeccC
Q 046626 221 FQDFSN 226 (557)
Q Consensus 221 l~~~~~ 226 (557)
+.....
T Consensus 348 i~~~~~ 353 (389)
T 1fnn_A 348 VETRQN 353 (389)
T ss_dssp SEEEEC
T ss_pred eEEeee
Confidence 976543
No 174
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.48 E-value=0.048 Score=44.29 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=38.3
Q ss_pred eEeeCCCChh--hhccccCCCCccCeeeccCCcCccccchh-hhcCCcCcEeecCCcCC
Q 046626 324 VIDLSETAIE--VLSREIGNLKHLRYLDLSDNDKIKKLPNS-ICELHSLQTLSLGGCRE 379 (557)
Q Consensus 324 ~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 379 (557)
+++.++++++ .+|..+. .+|++|+|++|. +..+|.. |..+++|++|+|.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 6777788877 7776543 368888888875 7777654 56778888888887764
No 175
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.15 E-value=0.044 Score=44.56 Aligned_cols=46 Identities=26% Similarity=0.306 Sum_probs=33.5
Q ss_pred CCC--CCChhhccCCCcccceEecccccccccCCccCCCCCCcceeeecCCC
Q 046626 477 PLL--ELPQWLLQGSTKTLKNLIIRNCPNFMALPESLRNLEALETLAIGGCP 526 (557)
Q Consensus 477 ~l~--~lp~~~~~~~l~~L~~L~L~~c~~~~~lp~~l~~l~~L~~L~l~~c~ 526 (557)
+++ .+|..+ .++|+.|+|++|.+...-+..|..+++|+.|+|++||
T Consensus 19 ~L~~~~vP~~l----p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 19 GLTWASLPTAF----PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCCTTTSCSCC----CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCccccCCCCC----CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 455 677543 4578899999988654444557788899999999876
No 176
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.01 E-value=0.059 Score=47.08 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=47.2
Q ss_pred HHHHHhhcCCCcceEeeCCC-Chh-----hhccccCCCCccCeeeccCCcCcc-----ccchhhhcCCcCcEeecCCcCC
Q 046626 311 ILTSCISKSQFLRVIDLSET-AIE-----VLSREIGNLKHLRYLDLSDNDKIK-----KLPNSICELHSLQTLSLGGCRE 379 (557)
Q Consensus 311 ~~~~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~ 379 (557)
.+...+..-+.|+.|+|+++ .+. .+.+.+..-..|+.|+|++|. ++ .+-..+..=+.|++|+|++|..
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 34444555566777777664 443 234445555567777777664 32 2333344456677777766654
Q ss_pred Ccc----ccccccCCCCCcEEEcccc
Q 046626 380 LEE----LPKDIRYLVSLRMFMVSTK 401 (557)
Q Consensus 380 ~~~----~p~~~~~l~~L~~L~l~~~ 401 (557)
... +-+.+..-+.|++|+++++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCC
Confidence 321 2223334445666666543
No 177
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.38 E-value=0.33 Score=46.24 Aligned_cols=105 Identities=9% Similarity=-0.012 Sum_probs=71.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChHH-HHHh-cCCCCCCcEEcCCCChhhhHHHHHHHhccC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNKV-ASIM-GTMRGTGGYKLEGLPYESCLSLFMKCAFKE 89 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~v-~~~~-~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~ 89 (557)
+++.++|+|+++.-....+..+...+.....+.++|+||...+- .... ... ..+++.+++.++..+++...+...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~---~~~~~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC---AIFRFRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE---EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC---cEEEecCCCHHHHHHHHHHHHHhc
Confidence 56889999999766666667777766555567889988876431 1111 111 268999999999999998877543
Q ss_pred CCCCChhHHHHHHHHHHHhCCChhHHHHHHHhh
Q 046626 90 GQHKNPNLVKIGEEIVKKSGGIPLAVRTLGSLL 122 (557)
Q Consensus 90 ~~~~~~~~~~l~~~i~~~c~glPlal~~ig~~L 122 (557)
+...+ .+....+++.++|.|..+..+-...
T Consensus 186 ~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 186 GLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp TCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 33222 2445778889999998765554433
No 178
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.02 E-value=0.55 Score=45.79 Aligned_cols=201 Identities=10% Similarity=0.019 Sum_probs=102.5
Q ss_pred HHHHHcC--CceEEEEEeCCCCC----ChhhHHHHHHhcCC-CCCCcEEEEecCChHHHHHhcC----CCCCCcEEcCCC
Q 046626 5 IMRSCLN--GKRYLFVMDDVWNE----DPKVWDELKSLLWG-GAKGSKILVTTRSNKVASIMGT----MRGTGGYKLEGL 73 (557)
Q Consensus 5 ~l~~~L~--~kr~LlVlDdv~~~----~~~~~~~l~~~~~~-~~~gsrIivTtr~~~v~~~~~~----~~~~~~~~~~~L 73 (557)
.+.+.+. +++.+||||+++.- +...+..+...+.. ...+..+|+||+..+....... .-....+.+.++
T Consensus 118 ~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l 197 (386)
T 2qby_A 118 RLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPY 197 (386)
T ss_dssp HHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCC
T ss_pred HHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCC
Confidence 3444443 45899999999431 12233444444422 2235567888876543221110 000127999999
Q ss_pred ChhhhHHHHHHHhccCC--CCCChhHHHHHHHHHHHhC---CChhHH-HHHHHhhc-----C--CCChHHHHHHHhhhcc
Q 046626 74 PYESCLSLFMKCAFKEG--QHKNPNLVKIGEEIVKKSG---GIPLAV-RTLGSLLY-----G--STDEHYWEYVRDNEIW 140 (557)
Q Consensus 74 ~~~~a~~Lf~~~a~~~~--~~~~~~~~~l~~~i~~~c~---glPlal-~~ig~~L~-----~--~~~~~~w~~l~~~~~~ 140 (557)
+.++..+++...+.... ....+ +....+++.++ |.|..+ ..+..+.. + .-+.+..+.+....
T Consensus 198 ~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~-- 272 (386)
T 2qby_A 198 NAEELEDILTKRAQMAFKPGVLPD---NVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI-- 272 (386)
T ss_dssp CHHHHHHHHHHHHHHHBCSSCSCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH--
Confidence 99999999998653211 12223 33455566665 998844 43333221 1 11223332222211
Q ss_pred ccccccCCchhhHhhcccCCChhhHHHhhhhccCCC-C-cccChHHHHHHHH----HcCCccCCCCCCChHhHHHHHHHH
Q 046626 141 KLEQKENDILPALKLSYDQLPPHLKQCFAYCSIFPK-D-YDFDSVLLIRFWM----AHGLLQSPNENEEPENIGMRYLNE 214 (557)
Q Consensus 141 ~~~~~~~~i~~~L~~sy~~L~~~~k~~fl~~a~fp~-~-~~~~~~~li~~w~----~~g~i~~~~~~~~~~~~~~~~l~~ 214 (557)
....+.-.+..+++..+..+..++...+ + ..+....+.+... ..| + ..........+++.
T Consensus 273 --------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~-----~~~~~~~~~~~l~~ 338 (386)
T 2qby_A 273 --------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-V-----EAVTQRRVSDIINE 338 (386)
T ss_dssp --------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-C-----CCCCHHHHHHHHHH
T ss_pred --------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-C-----CCCCHHHHHHHHHH
Confidence 1234556677888888888887775322 1 1122332222111 122 1 11123445677889
Q ss_pred HHhCCCceec
Q 046626 215 LLSRSFFQDF 224 (557)
Q Consensus 215 Li~~~ll~~~ 224 (557)
|...++++..
T Consensus 339 L~~~gli~~~ 348 (386)
T 2qby_A 339 LDMVGILTAK 348 (386)
T ss_dssp HHHHTSEEEE
T ss_pred HHhCCCEEEE
Confidence 9999998754
No 179
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.63 E-value=0.18 Score=43.95 Aligned_cols=114 Identities=20% Similarity=0.136 Sum_probs=66.7
Q ss_pred ccccCCCCCcEEEecCC-Ccc-chhHHHHHHhhcCCCcceEeeCCCChh-----hhccccCCCCccCeeeccCCcCccc-
Q 046626 287 SLLSDLRRARTILFPIN-DEK-TNQSILTSCISKSQFLRVIDLSETAIE-----VLSREIGNLKHLRYLDLSDNDKIKK- 358 (557)
Q Consensus 287 ~~~~~~~~l~~l~~~~~-~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~- 358 (557)
....+-+.|+.|.+..+ ..+ .....+-..+..-..|+.|+|++|.+. .+...+..-+.|+.|+|++|. ++.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHH
Confidence 34455667777777643 333 223445666777778888888888877 233444455678888888875 432
Q ss_pred ----cchhhhcCCcCcEeecCCcCC--Cc-----cccccccCCCCCcEEEcccc
Q 046626 359 ----LPNSICELHSLQTLSLGGCRE--LE-----ELPKDIRYLVSLRMFMVSTK 401 (557)
Q Consensus 359 ----lp~~~~~l~~L~~L~l~~~~~--~~-----~~p~~~~~l~~L~~L~l~~~ 401 (557)
+-..+..-..|++|+|++|.. +. .+-+.+..-+.|+.|+++.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 223344456688888876532 11 12222333455666665544
No 180
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.19 E-value=0.65 Score=45.33 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=36.1
Q ss_pred cCCCCccCeeeccCCcCccccc-hhhhcCCcCcEeecCCcCCCccccc-cccCCCCCcEEEccccccccc-ccCcCCCCC
Q 046626 339 IGNLKHLRYLDLSDNDKIKKLP-NSICELHSLQTLSLGGCRELEELPK-DIRYLVSLRMFMVSTKQKSLL-ESGIGCLSS 415 (557)
Q Consensus 339 ~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~l~~ 415 (557)
+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..++. .+..+++|+.+.+.++.+..+ ...|..+.+
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 344455555555432 33332 22344455555555431 223332 334455555555555444433 234455555
Q ss_pred CCeeccc
Q 046626 416 LRFLMIS 422 (557)
Q Consensus 416 L~~L~l~ 422 (557)
|+.+.+.
T Consensus 312 L~~i~lp 318 (379)
T 4h09_A 312 LSSVTLP 318 (379)
T ss_dssp CCEEECC
T ss_pred CCEEEcC
Confidence 5555553
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.94 E-value=0.84 Score=44.34 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=68.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-VASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++.++|+|++..-+......+...+.....+..+|++|.+.. +...... ....+++.+++.++..+++...+-..+
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~ 195 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRHQLEHILNEEH 195 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHh--heeEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999965555666777777655555677777776543 1111111 123799999999999999987764333
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTLG 119 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ig 119 (557)
...+ .+....+++.++|.|..+..+.
T Consensus 196 ~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 196 IAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 2222 2345778899999998776554
No 182
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.05 E-value=1.6 Score=41.06 Aligned_cols=103 Identities=12% Similarity=0.084 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-VASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++.++|+|++..-.......+...+.....+.++|+||.... +...... ....+++.+++.++..+++...+...+
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~~ 178 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEAMKKRLLEICEKEG 178 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT--TCEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh--hCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5688999999965554445556666655556778888876643 2111111 112799999999999999988775443
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTLG 119 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~ig 119 (557)
...+ .+....+++.++|.+..+..+-
T Consensus 179 ~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 179 VKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 2345678889999888655443
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.69 E-value=0.87 Score=40.86 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=59.6
Q ss_pred ceEEEEEeCCCCCChhh--HHHHHHhcCCC-CCC-cEEEEecCC---------hHHHHHhcCCCCCCcEEcCCCChhhhH
Q 046626 13 KRYLFVMDDVWNEDPKV--WDELKSLLWGG-AKG-SKILVTTRS---------NKVASIMGTMRGTGGYKLEGLPYESCL 79 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~--~~~l~~~~~~~-~~g-srIivTtr~---------~~v~~~~~~~~~~~~~~~~~L~~~~a~ 79 (557)
+..+||+||++...... .+.+...+... ..+ .+||+||+. ..+...+.... .+++..++.++..
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~---~i~l~~~~~~~~~ 180 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGL---TYQLQPMMDDEKL 180 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSE---EEECCCCCGGGHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCc---eEEeCCCCHHHHH
Confidence 45789999995432222 23333332111 112 247777763 22333332212 7999999999999
Q ss_pred HHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHH
Q 046626 80 SLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGS 120 (557)
Q Consensus 80 ~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~ 120 (557)
+++...+...+...+ .+....+++.+.|.+..+..+-.
T Consensus 181 ~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 181 AALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 999887754333222 34556788889998876655443
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.59 E-value=2.9 Score=41.65 Aligned_cols=105 Identities=17% Similarity=0.035 Sum_probs=63.0
Q ss_pred HHcCCceEEEEEeCCCCCCh--hhHHHHHHhcCC-CCCCcEEEEecCC---------hHHHHHhcCCCCCCcEEcCCCCh
Q 046626 8 SCLNGKRYLFVMDDVWNEDP--KVWDELKSLLWG-GAKGSKILVTTRS---------NKVASIMGTMRGTGGYKLEGLPY 75 (557)
Q Consensus 8 ~~L~~kr~LlVlDdv~~~~~--~~~~~l~~~~~~-~~~gsrIivTtr~---------~~v~~~~~~~~~~~~~~~~~L~~ 75 (557)
+.+..+.-+|+|||+..-.. ...+.+...+.. ...|..||+||.. ..+...+.... .+.++.++.
T Consensus 189 ~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~---~i~l~~p~~ 265 (440)
T 2z4s_A 189 EKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGL---VAKLEPPDE 265 (440)
T ss_dssp HHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSB---CCBCCCCCH
T ss_pred HHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCe---EEEeCCCCH
Confidence 33443677999999953221 122333333311 1246788888876 23444454333 689999999
Q ss_pred hhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 76 ESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 76 ~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
++-.+++...+...+...++ +....+++.+.|.+-.+..+
T Consensus 266 e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 266 ETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 99999998887533322222 23466788888887655433
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.23 E-value=4.5 Score=38.75 Aligned_cols=104 Identities=8% Similarity=0.012 Sum_probs=65.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCCC
Q 046626 13 KRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-VASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQ 91 (557)
Q Consensus 13 kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~ 91 (557)
++-++|||++..-+......+...+....++.++|++|.+.+ +...... ....+++.+++.++..+.+...+-..+.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 556999999966555555556666544445677888776632 2111110 1127999999999999999887643322
Q ss_pred CCChhHHHHHHHHHHHhCCChhHHHHHHH
Q 046626 92 HKNPNLVKIGEEIVKKSGGIPLAVRTLGS 120 (557)
Q Consensus 92 ~~~~~~~~l~~~i~~~c~glPlal~~ig~ 120 (557)
..+. .+....+++.++|.+..+..+-.
T Consensus 212 ~~~~--~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 212 QLET--KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EECC--SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCc--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2110 23457788899998876655543
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.76 E-value=6.2 Score=37.55 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=65.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-VASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+++-++|+|++..-.......+...+....++..+|++|.+.+ +...... ....+++.+++.++..+.+....
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S--Rc~~~~~~~~~~~~~~~~L~~~~---- 180 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS--RCRLHYLAPPPEQYAVTWLSREV---- 180 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHHC----
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh--cceeeeCCCCCHHHHHHHHHHhc----
Confidence 4677899999965555556667777766556777777776643 3222211 12379999999999999888775
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHHHHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAVRTL 118 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal~~i 118 (557)
..+ .+.+..+++.++|.|..+..+
T Consensus 181 -~~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 181 -TMS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp -CCC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred -CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 111 233467889999998765443
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.24 E-value=12 Score=35.69 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=65.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-----HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHh
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-----VASIMGTMRGTGGYKLEGLPYESCLSLFMKCA 86 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-----v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a 86 (557)
+++-++++|++..-.......+...+.......++|++|.... +...+ ..+++.+++.++..+.+...+
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~------~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC------SKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS------EEEECCCCCHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC------ceEEeCCCCHHHHHHHHHHHH
Confidence 3556999999965555555556666554445667777775432 22222 168999999999999988876
Q ss_pred ccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHH
Q 046626 87 FKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGS 120 (557)
Q Consensus 87 ~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~ 120 (557)
...+...+ .+....+++.++|.|..+..+..
T Consensus 206 ~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 206 EQENVKCD---DGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp HTTTCCCC---HHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 44333323 34567889999999887554443
No 188
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.46 E-value=27 Score=32.88 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=62.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCC------------------CCcEEEEecCChH-----HHHHhcCCCCCCcE
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGA------------------KGSKILVTTRSNK-----VASIMGTMRGTGGY 68 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~------------------~gsrIivTtr~~~-----v~~~~~~~~~~~~~ 68 (557)
.+..+|+||++..-.......+...+..+. ++.++|.+|.... +...+ ...+
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~-----~~~i 179 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRF-----GMQF 179 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTC-----SEEE
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhc-----CEEe
Confidence 456789999996655555555555543321 1245666665532 22221 1279
Q ss_pred EcCCCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHHHHH
Q 046626 69 KLEGLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRTLGS 120 (557)
Q Consensus 69 ~~~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ig~ 120 (557)
.+..++.++..+++...+-..+...+ .+....+++.+.|.|-.+..+..
T Consensus 180 ~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 180 RLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp ECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHHH
Confidence 99999999999999887754332222 34456788889999866554443
No 189
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=75.38 E-value=25 Score=31.96 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=50.9
Q ss_pred HHHcCCceEEEEEeCCCCC----------ChhhHHHHHHhcCC---CCCCcEEEEecCChHHHHHhcCCCC-CCcEEcCC
Q 046626 7 RSCLNGKRYLFVMDDVWNE----------DPKVWDELKSLLWG---GAKGSKILVTTRSNKVASIMGTMRG-TGGYKLEG 72 (557)
Q Consensus 7 ~~~L~~kr~LlVlDdv~~~----------~~~~~~~l~~~~~~---~~~gsrIivTtr~~~v~~~~~~~~~-~~~~~~~~ 72 (557)
......+..+|+||++..- .......+...+.. ......||.||...+.......... ...+.+..
T Consensus 118 ~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~ 197 (272)
T 1d2n_A 118 DDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPN 197 (272)
T ss_dssp HHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCC
T ss_pred HHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCC
Confidence 3334467899999998321 11122334444432 2223456777877765543221111 23678888
Q ss_pred CCh-hhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCC
Q 046626 73 LPY-ESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGG 110 (557)
Q Consensus 73 L~~-~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~g 110 (557)
++. ++..+++.... .. . .+....+++.+.|
T Consensus 198 l~~r~~i~~i~~~~~----~~-~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 198 IATGEQLLEALELLG----NF-K---DKERTTIAQQVKG 228 (272)
T ss_dssp EEEHHHHHHHHHHHT----CS-C---HHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhcC----CC-C---HHHHHHHHHHhcC
Confidence 887 55555555432 11 1 2335677777777
No 190
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=73.91 E-value=18 Score=34.25 Aligned_cols=102 Identities=9% Similarity=-0.074 Sum_probs=67.3
Q ss_pred CCceEEEEEeCCCC-CChhhHHHHHHhcCCCCCCcEEEEecCC-------hHHHHHhcCCCCCCcEEcCCCChhhhHHHH
Q 046626 11 NGKRYLFVMDDVWN-EDPKVWDELKSLLWGGAKGSKILVTTRS-------NKVASIMGTMRGTGGYKLEGLPYESCLSLF 82 (557)
Q Consensus 11 ~~kr~LlVlDdv~~-~~~~~~~~l~~~~~~~~~gsrIivTtr~-------~~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf 82 (557)
.+++-++|+|++.. -....++.+...+....+++.+|++|.. ..+...... ....++..+++.++..+..
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEEECCCCTTHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEEeeCCCHHHHHHHH
Confidence 45667888999855 4556777888888766668888776643 234443322 1237899999999888877
Q ss_pred HHHhccCCCCCChhHHHHHHHHHHHhCCChhHHHH
Q 046626 83 MKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVRT 117 (557)
Q Consensus 83 ~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~~ 117 (557)
...+-..+...+ .+.+..+++.++|...++..
T Consensus 152 ~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 152 AARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 776644332222 34467788888888776654
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=63.26 E-value=16 Score=33.42 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=40.8
Q ss_pred CCcEEEEecCChHHHHH--hcCCCCCCcEEcCCCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-hhHHH
Q 046626 42 KGSKILVTTRSNKVASI--MGTMRGTGGYKLEGLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGI-PLAVR 116 (557)
Q Consensus 42 ~gsrIivTtr~~~v~~~--~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~gl-Plal~ 116 (557)
.+..||.||...+.... .....-...+.+...+.++..+++...+.........++ ..+++.+.|. |-.+.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTCCHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCCCHHHHH
Confidence 35678888875432211 111111126899999999999999988754433322233 4566666663 43443
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=60.94 E-value=25 Score=32.52 Aligned_cols=72 Identities=6% Similarity=0.078 Sum_probs=47.7
Q ss_pred eEEEEEeCCCCC---------ChhhHHHHHHhcCCCCCCcEEEEecCChH----------HHHHhcCCCCCCcEEcCCCC
Q 046626 14 RYLFVMDDVWNE---------DPKVWDELKSLLWGGAKGSKILVTTRSNK----------VASIMGTMRGTGGYKLEGLP 74 (557)
Q Consensus 14 r~LlVlDdv~~~---------~~~~~~~l~~~~~~~~~gsrIivTtr~~~----------v~~~~~~~~~~~~~~~~~L~ 74 (557)
..+|+||++..- .......+...+.....+.+||+||.... +...+. ..+.+..++
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-----~~i~~~~~~ 205 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIA-----HHIEFPDYS 205 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-----EEEEECCCC
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-----eEEEcCCcC
Confidence 459999999522 44444556666655555678888886432 222322 278999999
Q ss_pred hhhhHHHHHHHhccCC
Q 046626 75 YESCLSLFMKCAFKEG 90 (557)
Q Consensus 75 ~~~a~~Lf~~~a~~~~ 90 (557)
.++-.+++...+-...
T Consensus 206 ~~~~~~il~~~l~~~~ 221 (309)
T 3syl_A 206 DEELFEIAGHMLDDQN 221 (309)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999988775433
No 193
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.09 E-value=17 Score=36.99 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=58.0
Q ss_pred CceEEEEEeCCCCCC---hhhHHHHHHhcCCCCCCcEEEEecCChH--HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHh
Q 046626 12 GKRYLFVMDDVWNED---PKVWDELKSLLWGGAKGSKILVTTRSNK--VASIMGTMRGTGGYKLEGLPYESCLSLFMKCA 86 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~---~~~~~~l~~~~~~~~~gsrIivTtr~~~--v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a 86 (557)
+++.+||+|++..-. ...+..+...+... +..||+++.+.. ..... ......+++..++.++..+.+...+
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l--~~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPF--DRVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGG--TTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhh--HhceEEEEeCCCCHHHHHHHHHHHH
Confidence 578899999995322 12234454444332 334555554432 11111 1112368999999999999998877
Q ss_pred ccCCCCCChhHHHHHHHHHHHhCCC-hhHHHHHH
Q 046626 87 FKEGQHKNPNLVKIGEEIVKKSGGI-PLAVRTLG 119 (557)
Q Consensus 87 ~~~~~~~~~~~~~l~~~i~~~c~gl-Plal~~ig 119 (557)
...+...+++ ....+++.++|. +-++..+.
T Consensus 223 ~~~~~~i~~~---~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 223 IREKFKLDPN---VIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHHTCCCCTT---HHHHHHHHTTTCHHHHHHHHT
T ss_pred HHcCCCCCHH---HHHHHHHHcCCcHHHHHHHHH
Confidence 5543333222 356788889984 44455443
No 194
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=59.78 E-value=66 Score=28.59 Aligned_cols=105 Identities=8% Similarity=0.052 Sum_probs=55.7
Q ss_pred CCceEEEEEeCCCCC------------Ch---hhHHHHHHhcCC--CCCCcEEEEecCChHHHH-Hh-cCCCCCCcEEcC
Q 046626 11 NGKRYLFVMDDVWNE------------DP---KVWDELKSLLWG--GAKGSKILVTTRSNKVAS-IM-GTMRGTGGYKLE 71 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~------------~~---~~~~~l~~~~~~--~~~gsrIivTtr~~~v~~-~~-~~~~~~~~~~~~ 71 (557)
.....+|+||++..- .. .....+...+.. ...+..||.||...+... .. ....-...+.+.
T Consensus 96 ~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp HTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
Confidence 345789999999432 00 111223332222 123556777776543221 11 111112368889
Q ss_pred CCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChh-HHHH
Q 046626 72 GLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPL-AVRT 117 (557)
Q Consensus 72 ~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPl-al~~ 117 (557)
..+.++-.+++...+........ .......+++.+.|.+- .|..
T Consensus 176 ~p~~~~r~~il~~~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 176 LPTLQERREIFEQHLKSLKLTQS--STFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCBT--HHHHHHHHHHTCTTCCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCCcc--hhhHHHHHHHHCCCCCHHHHHH
Confidence 99999999999887754333222 22234678888888754 4433
No 195
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=59.63 E-value=26 Score=32.78 Aligned_cols=93 Identities=9% Similarity=-0.001 Sum_probs=54.1
Q ss_pred eEEEEEeCCCCCCh--hhHHHHHHhcCC-CCCCcEEEEecCC---------hHHHHHhcCCCCCCcEEcCCCChhhhHHH
Q 046626 14 RYLFVMDDVWNEDP--KVWDELKSLLWG-GAKGSKILVTTRS---------NKVASIMGTMRGTGGYKLEGLPYESCLSL 81 (557)
Q Consensus 14 r~LlVlDdv~~~~~--~~~~~l~~~~~~-~~~gsrIivTtr~---------~~v~~~~~~~~~~~~~~~~~L~~~~a~~L 81 (557)
..+|++|++..-.. ...+.+...+.. ...|.+||+||.. ..+...+.... .+++.+ +.++..++
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~---~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI---LVEIEL-DNKTRFKI 174 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSE---EEECCC-CHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCce---EEEeCC-CHHHHHHH
Confidence 56999999943221 122233333211 1235678888753 23334443323 689999 99999999
Q ss_pred HHHHhccCCCCCChhHHHHHHHHHHHhCCChhH
Q 046626 82 FMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLA 114 (557)
Q Consensus 82 f~~~a~~~~~~~~~~~~~l~~~i~~~c~glPla 114 (557)
+...+...+...+ .+....+++.+ |..-.
T Consensus 175 l~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 175 IKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred HHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 9888754433333 23456677777 66543
No 196
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=58.85 E-value=30 Score=32.34 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCCCC-hhhHHHHHHhcCCCCCCcEEEEecCChH-----HHHHhcCCCCCCcEEcCCCChhhhHHH-----
Q 046626 13 KRYLFVMDDVWNED-PKVWDELKSLLWGGAKGSKILVTTRSNK-----VASIMGTMRGTGGYKLEGLPYESCLSL----- 81 (557)
Q Consensus 13 kr~LlVlDdv~~~~-~~~~~~l~~~~~~~~~gsrIivTtr~~~-----v~~~~~~~~~~~~~~~~~L~~~~a~~L----- 81 (557)
++.++|+|++..-. ....+.+...+.....+.++|+||.... +...+ ..+++..++.++-.++
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~------~~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC------RVITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS------EEEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC------cEEEeCCCCHHHHHHHHHHHH
Confidence 78899999995443 3344455555443334567888887643 22322 1688999998774332
Q ss_pred --HHHHhccCCCCCChhHHHHHHHHHHHhCCChhHHH
Q 046626 82 --FMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLAVR 116 (557)
Q Consensus 82 --f~~~a~~~~~~~~~~~~~l~~~i~~~c~glPlal~ 116 (557)
+...+...+...++ .+....+++.++|.+..+.
T Consensus 179 ~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 179 RRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 22222222222111 2455677888888766443
No 197
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=57.36 E-value=7.5 Score=33.58 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=34.1
Q ss_pred HHHHHHcCCceE-EEEEeCCCC---CChhhHHHHHHhcCCCCCCcEEEEecCCh
Q 046626 4 QIMRSCLNGKRY-LFVMDDVWN---EDPKVWDELKSLLWGGAKGSKILVTTRSN 53 (557)
Q Consensus 4 ~~l~~~L~~kr~-LlVlDdv~~---~~~~~~~~l~~~~~~~~~gsrIivTtr~~ 53 (557)
+..++.+.+.+| |||||.+-- -.....+.+...+.......-||+|+|..
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 356667766656 999999821 12233466777776666677899999995
No 198
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=55.05 E-value=55 Score=31.08 Aligned_cols=93 Identities=8% Similarity=-0.066 Sum_probs=57.3
Q ss_pred EEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC-----------------hHHHHHhcCCCCCCcEEcCCCChhh
Q 046626 15 YLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS-----------------NKVASIMGTMRGTGGYKLEGLPYES 77 (557)
Q Consensus 15 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~-----------------~~v~~~~~~~~~~~~~~~~~L~~~~ 77 (557)
.+|+||++..-.......+...+...... .++++|.. ..+...+ ..+.+.+++.++
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~------~~i~~~~~~~~e 263 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL------LIVSTTPYSEKD 263 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE------EEEEECCCCHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc------cEEEecCCCHHH
Confidence 59999999655555566666666544333 34444421 2333322 258999999999
Q ss_pred hHHHHHHHhccCCCCCChhHHHHHHHHHHHhC-CChhHHHH
Q 046626 78 CLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSG-GIPLAVRT 117 (557)
Q Consensus 78 a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~-glPlal~~ 117 (557)
..+++...+-..+...+ .+....+++.+. |.|..+..
T Consensus 264 ~~~il~~~~~~~~~~~~---~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 264 TKQILRIRCEEEDVEMS---EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHHHHHHTTCCBC---HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCCCHHHHHH
Confidence 99999987754333322 234567777776 76654443
No 199
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=43.97 E-value=2.1e+02 Score=26.94 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=54.2
Q ss_pred CceEEEEEeCCCCCChh-----------hHHHHHHhcC---CCCCCcEEEEecCCh-----HHHHHhcCCCCCCcEEcCC
Q 046626 12 GKRYLFVMDDVWNEDPK-----------VWDELKSLLW---GGAKGSKILVTTRSN-----KVASIMGTMRGTGGYKLEG 72 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~-----------~~~~l~~~~~---~~~~gsrIivTtr~~-----~v~~~~~~~~~~~~~~~~~ 72 (557)
.+..+|+||++..-... ....+...+. ....+..||.||... .+...+ ...+.+..
T Consensus 142 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf-----~~~i~i~~ 216 (355)
T 2qp9_X 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRF-----ERRIYIPL 216 (355)
T ss_dssp TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTC-----CEEEECCC
T ss_pred cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHccc-----CEEEEeCC
Confidence 46789999999422110 0122322222 122355666666643 233322 12688888
Q ss_pred CChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-hhHHHHHH
Q 046626 73 LPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGI-PLAVRTLG 119 (557)
Q Consensus 73 L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~gl-Plal~~ig 119 (557)
.+.++-.+++..+......... ......+++.+.|. +-.|..+.
T Consensus 217 P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 217 PDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999887743322111 22346778888884 44444443
No 200
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=43.26 E-value=50 Score=32.69 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=56.8
Q ss_pred CCceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH--HH-HHhcCCCCCCcEEcCCCChhhhHHHHHHHhc
Q 046626 11 NGKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK--VA-SIMGTMRGTGGYKLEGLPYESCLSLFMKCAF 87 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~--v~-~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~ 87 (557)
.+++.+|+||++..-.....+.+...+..+ .-.-|..||.+.. +. ....-. ..+.+..++.++..+++.+.+-
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~aL~sR~---~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNSALLSRA---RVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCHHHHTTE---EEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCHHHhCce---eEEeeCCcCHHHHHHHHHHHHH
Confidence 467889999999654444444455555442 1222333555432 11 111111 2688999999999999988765
Q ss_pred cCCC----CCChhHHHHHHHHHHHhCCChhHHHHHH
Q 046626 88 KEGQ----HKNPNLVKIGEEIVKKSGGIPLAVRTLG 119 (557)
Q Consensus 88 ~~~~----~~~~~~~~l~~~i~~~c~glPlal~~ig 119 (557)
.... ....--.+....+++.+.|.+..+..+-
T Consensus 180 ~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 180 DKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp CTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 4211 1101113455677788888877655443
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.06 E-value=1.2e+02 Score=28.42 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=58.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCChH-HHHHhcCCCCCCcEEcCCCChhhhHHHHHHHhccCC
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSNK-VASIMGTMRGTGGYKLEGLPYESCLSLFMKCAFKEG 90 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~~-v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a~~~~ 90 (557)
+.+-++|+|++..-.....+.+...+.......++|++|.... +...... ....+++.+++.++..+.+...+-..+
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s--R~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS--QCTRFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh--hceeEeccCCCHHHHHHHHHHHHHHcC
Confidence 3467899999955444455555555544444667777765532 1111110 012688999999998888877653222
Q ss_pred CCCChhHHHHHHHHHHHhCCChhHH
Q 046626 91 QHKNPNLVKIGEEIVKKSGGIPLAV 115 (557)
Q Consensus 91 ~~~~~~~~~l~~~i~~~c~glPlal 115 (557)
.... ......+++.++|.+--+
T Consensus 187 ~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 187 LKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCBC---HHHHHHHHHHHTTCHHHH
T ss_pred CCCC---HHHHHHHHHHcCCCHHHH
Confidence 2222 234567888888877643
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=42.08 E-value=1.6e+02 Score=28.21 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=33.3
Q ss_pred cEEcCCCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChh-HHHHH
Q 046626 67 GYKLEGLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPL-AVRTL 118 (557)
Q Consensus 67 ~~~~~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPl-al~~i 118 (557)
.+.+...+.++-.+++...+-....... ......+++.+.|..- +|..+
T Consensus 276 ~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 276 RVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 6888889999999999887754333322 2345678888888654 44443
No 203
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=39.57 E-value=1.1e+02 Score=28.96 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=32.4
Q ss_pred cEEcCCCChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-hhHHHHHH
Q 046626 67 GYKLEGLPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGI-PLAVRTLG 119 (557)
Q Consensus 67 ~~~~~~L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~gl-Plal~~ig 119 (557)
.+.+...+.++..+++...+-....... ......+++.+.|. +.+|..+.
T Consensus 245 ~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 245 RLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6788888999888888877643322222 23456788888884 44555443
No 204
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=35.61 E-value=2.7e+02 Score=25.68 Aligned_cols=99 Identities=10% Similarity=-0.009 Sum_probs=55.8
Q ss_pred CceEEEEEeCCCCCCh-----------hhHHHHHHhcC---CCCCCcEEEEecCChH-----HHHHhcCCCCCCcEEcCC
Q 046626 12 GKRYLFVMDDVWNEDP-----------KVWDELKSLLW---GGAKGSKILVTTRSNK-----VASIMGTMRGTGGYKLEG 72 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~-----------~~~~~l~~~~~---~~~~gsrIivTtr~~~-----v~~~~~~~~~~~~~~~~~ 72 (557)
.+..+|+||++..-.. .....+...+. ....+..||.||...+ +...+. ..+.+..
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~-----~~i~~~~ 183 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFE-----RRIYIPL 183 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCC-----EEEECCC
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccC-----eEEEeCC
Confidence 4568999999942110 11233333332 2334556666776532 223221 2678888
Q ss_pred CChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-hhHHHHH
Q 046626 73 LPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGI-PLAVRTL 118 (557)
Q Consensus 73 L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~gl-Plal~~i 118 (557)
.+.++-.+++..++........ ......+++.+.|. +-.|..+
T Consensus 184 p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 184 PDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999988754332211 22346788888874 4444433
No 205
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=30.60 E-value=1.9e+02 Score=28.48 Aligned_cols=93 Identities=10% Similarity=-0.019 Sum_probs=57.4
Q ss_pred EEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEec---------CC---------hHHHHHhcCCCCCCcEEcCCCChhh
Q 046626 16 LFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTT---------RS---------NKVASIMGTMRGTGGYKLEGLPYES 77 (557)
Q Consensus 16 LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTt---------r~---------~~v~~~~~~~~~~~~~~~~~L~~~~ 77 (557)
++++|++..-+......+...+...... .+|+.| .+ ..+...|. .+.+.+++.++
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~------~~~~~~~~~~e 370 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM------IIRTMLYTPQE 370 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE------EEECCCCCHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcc------eeeCCCCCHHH
Confidence 8999999766666677777777655434 344333 11 12333332 57999999999
Q ss_pred hHHHHHHHhccCCCCCChhHHHHHHHHHHHh-CCChhHHHHH
Q 046626 78 CLSLFMKCAFKEGQHKNPNLVKIGEEIVKKS-GGIPLAVRTL 118 (557)
Q Consensus 78 a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c-~glPlal~~i 118 (557)
..+.+...+-..+...+ .+....+++.+ +|-|.....+
T Consensus 371 ~~~iL~~~~~~~~~~~~---~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 371 MKQIIKIRAQTEGINIS---EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHHHTCCBC---HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCC---HHHHHHHHHHccCCCHHHHHHH
Confidence 99999887643222222 23446677777 6777654443
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=28.74 E-value=64 Score=29.95 Aligned_cols=71 Identities=10% Similarity=-0.002 Sum_probs=50.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCCh-HHHHHhcCCCCCCcEEcCCCChhhhHHHHHHHh
Q 046626 12 GKRYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRSN-KVASIMGTMRGTGGYKLEGLPYESCLSLFMKCA 86 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~~-~v~~~~~~~~~~~~~~~~~L~~~~a~~Lf~~~a 86 (557)
+++-++|+|++..-.......+...+....+.+++|++|.+. .+....... .+++.+++.++..+.+...+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR----~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR----VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT----SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce----eEeCCCCCHHHHHHHHHHHh
Confidence 456689999996666666677777776665678888777554 333322221 69999999999998887776
No 207
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=27.91 E-value=31 Score=28.81 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCChhhHH--HHHHhcCCC-CCCcEEEEecCC
Q 046626 14 RYLFVMDDVWNEDPKVWD--ELKSLLWGG-AKGSKILVTTRS 52 (557)
Q Consensus 14 r~LlVlDdv~~~~~~~~~--~l~~~~~~~-~~gsrIivTtr~ 52 (557)
.-+||||+++......|. .+...+... ..|..||+||..
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 458999999732222332 333333221 246778888853
No 208
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=25.62 E-value=4.1e+02 Score=25.87 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=53.4
Q ss_pred CceEEEEEeCCCCCC-------hh----hHHHHHHhcCC---CCCCcEEEEecCChHHH-HHhcCCCCCCcEEcCCCChh
Q 046626 12 GKRYLFVMDDVWNED-------PK----VWDELKSLLWG---GAKGSKILVTTRSNKVA-SIMGTMRGTGGYKLEGLPYE 76 (557)
Q Consensus 12 ~kr~LlVlDdv~~~~-------~~----~~~~l~~~~~~---~~~gsrIivTtr~~~v~-~~~~~~~~~~~~~~~~L~~~ 76 (557)
.+..+|+||++..-. .. ....+...+.. ...+..||.||...+.. ..... .-...+.+...+.+
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~ 304 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEAH 304 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT-TCCEEEECCCCCHH
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh-hcceEEEeCCcCHH
Confidence 467899999994220 01 11222222222 12355666677653221 11100 11126788888888
Q ss_pred hhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCC-hhHHHHH
Q 046626 77 SCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGI-PLAVRTL 118 (557)
Q Consensus 77 ~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~gl-Plal~~i 118 (557)
+-..+|..+......... ......+++.+.|. +-.|..+
T Consensus 305 ~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 305 ARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp HHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 888888887643222111 22346778888885 4344443
No 209
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=24.62 E-value=2.9e+02 Score=25.65 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=38.5
Q ss_pred cEEcCCCChhhhHHHHHHHhccCCCC------------------------------------CChhHHHHHHHHHHHhCC
Q 046626 67 GYKLEGLPYESCLSLFMKCAFKEGQH------------------------------------KNPNLVKIGEEIVKKSGG 110 (557)
Q Consensus 67 ~~~~~~L~~~~a~~Lf~~~a~~~~~~------------------------------------~~~~~~~l~~~i~~~c~g 110 (557)
.+...+.+.++-.+++...+-..... .+..++-+|+.++...|.
T Consensus 192 ~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD 271 (318)
T 3te6_A 192 EIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGS 271 (318)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCS
T ss_pred EEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCCh
Confidence 58899999999999988776432110 123455666777777777
Q ss_pred ChhHHHHHHHhhc
Q 046626 111 IPLAVRTLGSLLY 123 (557)
Q Consensus 111 lPlal~~ig~~L~ 123 (557)
.-.|+.++-.+..
T Consensus 272 ~R~Al~ilr~A~~ 284 (318)
T 3te6_A 272 TEKAFKICEAAVE 284 (318)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665543
No 210
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=23.87 E-value=58 Score=17.05 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.6
Q ss_pred hCCChhHHHHHHHhhcCC
Q 046626 108 SGGIPLAVRTLGSLLYGS 125 (557)
Q Consensus 108 c~glPlal~~ig~~L~~~ 125 (557)
-.-+|+|..++++.+..+
T Consensus 8 rrklplavav~agv~~aq 25 (28)
T 2vda_B 8 RRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCTHHHHHHHHTTCCC
T ss_pred cccCchHHHHHHHHhHhh
Confidence 356899999999988753
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=21.94 E-value=3.5e+02 Score=24.53 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=52.9
Q ss_pred CCceEEEEEeCCCCCC--------------hhhHHHHHHhcCC--CCCCcEEEEecCChHHHH-H-hcCCCCCCcEEcCC
Q 046626 11 NGKRYLFVMDDVWNED--------------PKVWDELKSLLWG--GAKGSKILVTTRSNKVAS-I-MGTMRGTGGYKLEG 72 (557)
Q Consensus 11 ~~kr~LlVlDdv~~~~--------------~~~~~~l~~~~~~--~~~gsrIivTtr~~~v~~-~-~~~~~~~~~~~~~~ 72 (557)
.....+|++|++..-. ......+...+.. ...+..||.||...+... . .....-...+.+..
T Consensus 106 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~ 185 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185 (301)
T ss_dssp HTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCC
T ss_pred hcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCC
Confidence 3456899999993100 0012333333321 223556777776653321 1 11112123688999
Q ss_pred CChhhhHHHHHHHhccCCCCCChhHHHHHHHHHHHhCCChhH
Q 046626 73 LPYESCLSLFMKCAFKEGQHKNPNLVKIGEEIVKKSGGIPLA 114 (557)
Q Consensus 73 L~~~~a~~Lf~~~a~~~~~~~~~~~~~l~~~i~~~c~glPla 114 (557)
.+.++-.+++....-......+.++ ..+++.+.|.|-+
T Consensus 186 p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 186 PDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred cCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 9998888888777643322222233 3455667777654
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=21.80 E-value=67 Score=25.64 Aligned_cols=39 Identities=8% Similarity=-0.077 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCCChhhHHHHHHhcCCCCCCcEEEEecCC
Q 046626 14 RYLFVMDDVWNEDPKVWDELKSLLWGGAKGSKILVTTRS 52 (557)
Q Consensus 14 r~LlVlDdv~~~~~~~~~~l~~~~~~~~~gsrIivTtr~ 52 (557)
.-.|+||++..-.......+...+.......+||+||..
T Consensus 77 ~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 77 GGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 357899999766655555666666444445677777764
Done!