BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046627
(767 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 91/231 (39%), Gaps = 61/231 (26%)
Query: 304 LGALTGGSTIPSLAIVDPISNQHYVASKEATFNYSSMADFLHGFLNGTLLPYQRSESILQ 363
G + IP +AI + +V +E + + ++ FL + +G L Y +SE I
Sbjct: 290 FGLESTAGEIPVVAI-RTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPI-- 346
Query: 364 ISREATHPPFVNMDFHEVDSIPRVTVHSFSDLVGLNQSDNENAFSAWNEDVVVLFSSSWC 423
E+ P + V +F ++V +NEN +DV++ F + WC
Sbjct: 347 --PESNDGP-----------VKVVVAENFDEIV-----NNEN------KDVLIEFYAPWC 382
Query: 424 GFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLPRIYL--MDCTLN 481
G C+ +E +E+ GE L K P I + MD T N
Sbjct: 383 GHCKNLEPKYKEL-----------------------GEKLS----KDPNIVIAKMDATAN 415
Query: 482 DCSLILKSMTQREVYPALVLFPAERK-NAISFKGDISVADVIKFIADHGNN 531
D + S + +P + PA +K N ++G ++D I ++ N
Sbjct: 416 D----VPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATN 462
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 30/120 (25%)
Query: 412 EDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLP 471
+DV+VL+ + WCG C+R+ +E L + Y N D+
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQE-----------LADTYANATSDV------------- 412
Query: 472 RIYLMDCTLNDCSLILKSMTQREVYPALVLFPAERKN-AISFKGDISVADVIKFIADHGN 530
I +D T ND ++ E YP +VL+P +K+ ++ ++G S+ + FI ++G+
Sbjct: 413 LIAKLDHTENDVRGVV-----IEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGH 467
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 30/119 (25%)
Query: 412 EDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLP 471
+DV++ F + WCG C+++E + SL YK GQ+DL
Sbjct: 26 KDVLIEFYAPWCGHCKQLEPI-----------YTSLGKKYK-GQKDL------------- 60
Query: 472 RIYLMDCTLNDCSLILKSMTQREVYPALVLFPA-ERKNAISFK-GDISVADVIKFIADH 528
I MD T ND I + E +P + P+ ++KN I F+ G+ + + KFI +H
Sbjct: 61 VIAKMDATAND---ITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEH 116
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 33/121 (27%)
Query: 412 EDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKLP 471
+DV++ F + WCG C K+L Y+ +L Y K+ FK
Sbjct: 26 KDVLIEFYAPWCGHC------------------KALAPKYE----ELGALYAKS-EFK-D 61
Query: 472 RIYL--MDCTLNDCSLILKSMTQREVYPALVLFPAERK-NAISFKGDISVADVIKFIADH 528
R+ + +D T ND + + +P + L+PA K +++ G +V D+IKFIA++
Sbjct: 62 RVVIAKVDATANDVP------DEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 115
Query: 529 G 529
G
Sbjct: 116 G 116
>pdb|2EW0|A Chain A, X-Ray Crystal Structure Of Protein Q6ff54 From
Acinetobacter Sp. Adp1. Northeast Structural Genomics
Consortium Target Asr1
Length = 192
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 627 FENSKILIVKADQSVGFQGLIFNKHIGW---DSLQELEKGLDFLKEAPLSFGGPLIKHRM 683
F N+ I + + D+ G QG+I N+ G + L +L+ D + + GGPL +
Sbjct: 22 FANTVIYLARHDEE-GAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPL-RPEA 79
Query: 684 PLVSLTRRVTKSQYPEIVPGVYFLDQSATVNEIEELKSGNHSIVDYWFFLGFSGWGWDQL 743
V T + T + V T +I + + N + Y LG++ WG +QL
Sbjct: 80 GFVLHTGQPTWHSSIAVGENVCI----TTSKDILDAIAHNEGVGRYQIALGYASWGKNQL 135
Query: 744 FHEIAQGAW 752
EIA+G W
Sbjct: 136 EDEIARGDW 144
>pdb|2GZO|A Chain A, Nmr Structure Of Upf0301 Protein So3346 From Shewanella
Oneidensis: Northeast Structural Genomics Consortium
Target Sor39
Length = 195
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 627 FENSKILIVKADQSVGFQGLIFNKHIGWDSLQELEK--------GLDFLKEAPLSFGGPL 678
FE + I + + D+ G GL+ NK +G + LE+ D + + GGP+
Sbjct: 20 FERTVIYLCEHDEK-GAMGLVINKPLGIEVNSLLEQMDLPTEQVSADLAMGSQVLMGGPV 78
Query: 679 IKHRMPLVSLTRRVTKSQYPEIVPGVYFLDQSATVNEIEELKSGNHSIVDYWFFLGFSGW 738
+ R V T + + E+ G+ + I +S + +V LG++GW
Sbjct: 79 SQDR-GFVLHTSQPYWANSTELGSGLMLTTSRDVLTAIGSKRSPDKFLVA----LGYAGW 133
Query: 739 GWDQLFHEIAQGAWTT 754
+QL E+A +W T
Sbjct: 134 SKNQLEQELADNSWLT 149
>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
From Clostridium Aminobutyricum
pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
Clostridium Aminobutyricum And Coa
Length = 448
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 628 ENSKILIVKADQSVGFQGLIFNKHIGWDSLQELEKGLDFLKEAPLSFGGPLIKHRMPLVS 687
+ SK++ + A V F G I + IG + +DF++ A +S G K + + S
Sbjct: 302 QCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKG-KAIIAMPS 360
Query: 688 LTRRVTKSQYPEIVPGVYFLDQSATVN 714
+ ++ S +IVP F+D A V
Sbjct: 361 VAKKKDGSMISKIVP---FIDHGAAVT 384
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 34/118 (28%)
Query: 411 NEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMKSLKNGYKNGQRDLNGEYLKNINFKL 470
N+DV++ F + WCG C+ +E +E+ GE L K
Sbjct: 45 NKDVLIEFYAPWCGHCKNLEPKYKEL-----------------------GEKLS----KD 77
Query: 471 PRIYL--MDCTLNDCSLILKSMTQREVYPALVLFPAERK-NAISFKGDISVADVIKFI 525
P I + MD T ND + S + +P + PA +K N ++G ++D I ++
Sbjct: 78 PNIVIAKMDATAND----VPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYL 131
>pdb|3PNU|A Chain A, 2.4 Angstrom Crystal Structure Of Dihydroorotase (Pyrc)
From Campylobacter Jejuni.
pdb|3PNU|B Chain B, 2.4 Angstrom Crystal Structure Of Dihydroorotase (Pyrc)
From Campylobacter Jejuni
Length = 359
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 495 VYPALVLFPAERKNAISFKGDISVADVIKFIADHGNNSHDLLNENGIIWTLPEKEGRYQN 554
V+ A V+ P A FK + S ++ KF++D+ +DL + I TL EKE + N
Sbjct: 279 VFSAPVILPVL---AELFKQNSSEENLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQVPN 335
Query: 555 LFED 558
++ED
Sbjct: 336 VYED 339
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 395 LVGLNQSDNENAFSAWNEDVVVLFSSSWCGFCQRMELVVREVFRAVKGYMK 445
L L+ SD + + ++++F+ SWC C++M+ E+ ++G ++
Sbjct: 1 LRSLSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIR 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,188,334
Number of Sequences: 62578
Number of extensions: 921433
Number of successful extensions: 2431
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2418
Number of HSP's gapped (non-prelim): 17
length of query: 767
length of database: 14,973,337
effective HSP length: 106
effective length of query: 661
effective length of database: 8,340,069
effective search space: 5512785609
effective search space used: 5512785609
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)